Query 001097
Match_columns 1158
No_of_seqs 289 out of 295
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:54:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxl_A Paraneoplastic encephal 99.8 7.9E-21 2.7E-25 179.5 14.2 142 569-719 1-156 (167)
2 3nmr_A Cugbp ELAV-like family 99.8 1.3E-20 4.5E-25 179.7 14.0 143 568-718 1-161 (175)
3 3md3_A Nuclear and cytoplasmic 99.8 1.5E-20 5.1E-25 177.4 13.5 142 571-719 1-155 (166)
4 1b7f_A Protein (SXL-lethal pro 99.8 2.1E-20 7.1E-25 177.7 13.9 141 569-718 2-156 (168)
5 3tyt_A Heterogeneous nuclear r 99.8 1.3E-19 4.5E-24 184.8 16.1 151 569-719 3-191 (205)
6 4f02_A Polyadenylate-binding p 99.8 3.9E-20 1.3E-24 186.9 11.8 145 568-719 13-169 (213)
7 2qfj_A FBP-interacting repress 99.8 7.4E-20 2.5E-24 181.0 10.9 155 565-719 23-193 (216)
8 2g4b_A Splicing factor U2AF 65 99.8 1.4E-19 4.8E-24 173.1 12.2 142 568-719 2-162 (172)
9 1qm9_A Polypyrimidine tract-bi 99.8 3.5E-19 1.2E-23 175.5 15.4 149 570-719 3-184 (198)
10 2adc_A Polypyrimidine tract-bi 99.8 3.8E-19 1.3E-23 181.5 15.7 151 568-719 32-215 (229)
11 2yh0_A Splicing factor U2AF 65 99.8 1.9E-19 6.6E-24 175.7 12.3 150 569-719 3-182 (198)
12 3pgw_A U1-A; protein-RNA compl 99.8 4.8E-19 1.7E-23 183.8 15.5 151 567-719 6-270 (282)
13 3sde_A Paraspeckle component 1 99.8 4.6E-19 1.6E-23 184.5 14.6 137 565-716 17-160 (261)
14 3smz_A Protein raver-1, ribonu 99.8 4.1E-19 1.4E-23 184.6 13.5 197 567-787 19-230 (284)
15 1l3k_A Heterogeneous nuclear r 99.8 4.5E-19 1.6E-23 172.9 11.9 141 568-712 11-165 (196)
16 1fje_B Nucleolin RBD12, protei 99.8 8.7E-19 3E-23 168.8 13.5 141 568-719 11-162 (175)
17 2cjk_A Nuclear polyadenylated 99.8 2.2E-19 7.7E-24 170.9 8.6 140 568-718 1-153 (167)
18 2ghp_A U4/U6 snRNA-associated 99.7 6.7E-18 2.3E-22 176.1 13.6 190 568-776 39-245 (292)
19 3smz_A Protein raver-1, ribonu 99.7 1.6E-17 5.3E-22 172.7 14.9 157 557-719 82-252 (284)
20 2ghp_A U4/U6 snRNA-associated 99.7 2.3E-17 8E-22 172.0 12.5 148 569-719 116-279 (292)
21 4f25_A Polyadenylate-binding p 99.6 5.3E-16 1.8E-20 144.2 8.8 100 570-670 5-112 (115)
22 2cpj_A Non-POU domain-containi 99.5 9.4E-15 3.2E-19 131.2 8.9 77 563-639 8-88 (99)
23 2hvz_A Splicing factor, argini 99.5 1.1E-14 3.6E-19 131.1 9.0 92 571-664 1-100 (101)
24 3r27_A HnRNP L, heterogeneous 99.5 1.4E-14 4.8E-19 135.5 9.4 77 563-639 14-96 (100)
25 1wex_A Hypothetical protein (r 99.5 1.9E-14 6.6E-19 133.7 9.6 78 563-640 8-91 (104)
26 2cq1_A PTB-like protein L; RRM 99.5 4.7E-14 1.6E-18 130.7 9.4 76 564-639 9-90 (101)
27 2cq2_A Hypothetical protein LO 99.5 2.6E-14 8.8E-19 136.5 7.8 64 568-631 23-88 (114)
28 1x4d_A Matrin 3; structural ge 99.5 2.4E-14 8.1E-19 133.5 7.3 71 569-639 14-91 (102)
29 2ytc_A PRE-mRNA-splicing facto 99.5 7.7E-14 2.6E-18 121.3 8.8 70 568-637 10-84 (85)
30 1why_A Hypothetical protein ri 99.5 1.2E-13 3.9E-18 123.7 9.3 73 567-639 14-92 (97)
31 1sjq_A Polypyrimidine tract-bi 99.5 5.2E-14 1.8E-18 132.6 7.0 72 568-639 14-91 (105)
32 2ad9_A Polypyrimidine tract-bi 99.5 9.9E-14 3.4E-18 133.0 9.0 73 567-639 28-106 (119)
33 1x5s_A Cold-inducible RNA-bind 99.5 2.4E-13 8.1E-18 122.2 10.9 78 563-640 5-92 (102)
34 2cqi_A Nucleolysin TIAR; RNA r 99.5 2E-13 6.9E-18 123.1 10.4 76 565-640 10-93 (103)
35 1x4f_A Matrin 3; structural ge 99.5 6.7E-14 2.3E-18 133.0 7.5 73 567-639 22-101 (112)
36 2la4_A Nuclear and cytoplasmic 99.4 8.8E-14 3E-18 125.1 7.3 70 569-638 26-99 (101)
37 2x1f_A MRNA 3'-END-processing 99.4 1.5E-13 5E-18 122.8 8.7 71 569-639 1-81 (96)
38 3md1_A Nuclear and cytoplasmic 99.4 1.6E-13 5.6E-18 118.4 8.4 70 570-639 1-80 (83)
39 2dnz_A Probable RNA-binding pr 99.4 3.1E-13 1.1E-17 119.7 10.4 73 568-640 3-85 (95)
40 3mdf_A Peptidyl-prolyl CIS-tra 99.4 1.7E-13 5.7E-18 118.9 8.5 70 568-637 5-84 (85)
41 4fxv_A ELAV-like protein 1; RN 99.4 2E-13 6.7E-18 124.8 9.3 74 566-639 15-98 (99)
42 2wbr_A GW182, gawky, LD47780P; 99.4 9.9E-14 3.4E-18 128.1 7.1 68 570-637 7-78 (89)
43 3bs9_A Nucleolysin TIA-1 isofo 99.4 2E-13 6.7E-18 118.9 8.7 72 568-639 4-85 (87)
44 2cqb_A Peptidyl-prolyl CIS-tra 99.4 1.6E-13 5.4E-18 123.3 8.3 76 565-640 7-92 (102)
45 1x4g_A Nucleolysin TIAR; struc 99.4 1.7E-13 5.8E-18 125.3 8.5 73 568-640 23-99 (109)
46 2ywk_A Putative RNA-binding pr 99.4 1.6E-13 5.6E-18 121.5 8.1 72 568-639 14-94 (95)
47 2cqc_A Arginine/serine-rich sp 99.4 1.8E-13 6.2E-18 121.0 8.3 74 566-639 11-94 (95)
48 1x5t_A Splicing factor 3B subu 99.4 2.7E-13 9.1E-18 120.4 9.2 73 568-640 3-86 (96)
49 2dnq_A RNA-binding protein 4B; 99.4 3.2E-13 1.1E-17 119.4 9.6 71 568-640 6-80 (90)
50 3s8s_A Histone-lysine N-methyl 99.4 2E-13 7E-18 127.2 8.6 72 568-639 4-85 (110)
51 2kvi_A Nuclear polyadenylated 99.4 3E-13 1E-17 121.4 9.2 75 564-640 4-83 (96)
52 2cph_A RNA binding motif prote 99.4 3.4E-13 1.2E-17 121.9 9.5 74 567-640 12-97 (107)
53 1whx_A Hypothetical protein ri 99.4 2.4E-13 8.2E-18 126.1 8.5 71 569-639 9-83 (111)
54 2cpf_A RNA binding motif prote 99.4 3E-13 1E-17 120.7 8.8 73 568-640 3-88 (98)
55 2dgt_A RNA-binding protein 30; 99.4 4.8E-13 1.6E-17 118.7 9.7 71 568-640 8-82 (92)
56 2cq3_A RNA-binding protein 9; 99.4 5.7E-13 1.9E-17 120.2 10.4 74 567-640 12-93 (103)
57 1x4a_A Splicing factor, argini 99.4 5.2E-13 1.8E-17 121.8 9.9 73 568-640 20-99 (109)
58 2dnp_A RNA-binding protein 14; 99.4 4.9E-13 1.7E-17 118.2 9.4 71 568-640 7-81 (90)
59 2xnq_A Nuclear polyadenylated 99.4 4.5E-13 1.5E-17 121.3 9.3 72 566-639 18-94 (97)
60 2e5h_A Zinc finger CCHC-type a 99.4 4.5E-13 1.5E-17 118.5 9.0 71 567-637 13-93 (94)
61 2dnh_A Bruno-like 5, RNA bindi 99.4 4.2E-13 1.4E-17 121.1 8.9 72 568-639 13-96 (105)
62 2dgx_A KIAA0430 protein; RRM d 99.4 3.4E-13 1.2E-17 121.2 8.2 73 567-639 6-89 (96)
63 1u6f_A Tcubp1, RNA-binding pro 99.4 3.8E-13 1.3E-17 127.3 8.9 73 568-640 40-122 (139)
64 4a8x_A RNA-binding protein wit 99.4 4.1E-13 1.4E-17 116.9 8.4 71 569-639 3-84 (88)
65 2d9p_A Polyadenylate-binding p 99.4 3.6E-13 1.2E-17 121.5 8.3 73 568-640 13-93 (103)
66 3lqv_A PRE-mRNA branch site pr 99.4 5.6E-13 1.9E-17 122.4 9.5 96 569-681 7-109 (115)
67 2dgp_A Bruno-like 4, RNA bindi 99.4 4.6E-13 1.6E-17 121.1 8.7 73 568-640 11-96 (106)
68 1fjc_A Nucleolin RBD2, protein 99.4 3.5E-13 1.2E-17 119.9 7.7 84 557-640 3-91 (96)
69 2div_A TRNA selenocysteine ass 99.4 5.5E-13 1.9E-17 119.2 9.0 72 568-639 7-93 (99)
70 2fy1_A RNA-binding motif prote 99.4 7.3E-13 2.5E-17 123.7 10.0 73 568-640 5-86 (116)
71 2cqh_A IGF-II mRNA-binding pro 99.4 3E-13 1E-17 119.9 7.0 72 568-640 6-83 (93)
72 1p27_B RNA-binding protein 8A; 99.4 6.5E-13 2.2E-17 120.1 9.3 73 567-639 20-102 (106)
73 2dgv_A HnRNP M, heterogeneous 99.4 4.6E-13 1.6E-17 118.0 8.0 73 568-640 6-86 (92)
74 2la6_A RNA-binding protein FUS 99.4 6.4E-13 2.2E-17 119.3 9.0 70 568-637 11-98 (99)
75 2err_A Ataxin-2-binding protei 99.4 5.8E-13 2E-17 122.7 8.9 72 568-639 27-106 (109)
76 2cpe_A RNA-binding protein EWS 99.4 8.5E-13 2.9E-17 120.9 9.9 82 559-640 4-103 (113)
77 1whw_A Hypothetical protein ri 99.4 5E-13 1.7E-17 119.5 8.1 72 568-639 6-87 (99)
78 1x4e_A RNA binding motif, sing 99.4 1.6E-13 5.4E-18 119.6 4.7 65 568-632 3-73 (85)
79 2dgo_A Cytotoxic granule-assoc 99.4 5.8E-13 2E-17 122.3 8.6 73 568-640 13-95 (115)
80 2do0_A HnRNP M, heterogeneous 99.4 7.5E-13 2.6E-17 121.1 9.3 77 563-639 8-93 (114)
81 1nu4_A U1A RNA binding domain; 99.4 5E-13 1.7E-17 118.8 7.9 73 567-639 5-88 (97)
82 2jvo_A Nucleolar protein 3; nu 99.4 6.1E-13 2.1E-17 123.0 8.7 71 567-639 28-102 (108)
83 2do4_A Squamous cell carcinoma 99.4 7.1E-13 2.4E-17 119.0 8.5 72 568-639 15-95 (100)
84 3ex7_B RNA-binding protein 8A; 99.4 9.3E-13 3.2E-17 122.8 9.6 77 564-640 16-102 (126)
85 1wf1_A RNA-binding protein RAL 99.4 1E-12 3.5E-17 120.3 9.4 71 567-639 24-99 (110)
86 2lxi_A RNA-binding protein 10; 99.4 3.8E-13 1.3E-17 120.7 6.3 70 570-639 1-82 (91)
87 2a3j_A U1 small nuclear ribonu 99.4 8.5E-13 2.9E-17 126.9 9.1 73 567-639 26-109 (127)
88 2dgs_A DAZ-associated protein 99.4 1E-12 3.6E-17 117.7 9.1 72 568-640 8-89 (99)
89 1x5o_A RNA binding motif, sing 99.4 1E-12 3.5E-17 120.5 9.2 73 568-640 23-112 (114)
90 2dis_A Unnamed protein product 99.4 6.5E-13 2.2E-17 120.6 7.8 73 568-640 6-92 (109)
91 2e5j_A Methenyltetrahydrofolat 99.4 1.3E-12 4.3E-17 117.2 9.4 72 568-639 17-93 (97)
92 1oo0_B CG8781-PA, drosophila Y 99.4 1.1E-12 3.8E-17 119.6 9.1 72 568-639 24-105 (110)
93 2cq0_A Eukaryotic translation 99.4 6.6E-13 2.3E-17 119.7 7.6 73 568-640 13-95 (103)
94 2dgu_A Heterogeneous nuclear r 99.4 7.9E-13 2.7E-17 119.8 8.1 72 567-640 8-83 (103)
95 2e5i_A Heterogeneous nuclear r 99.4 1.5E-12 5.2E-17 125.5 10.5 75 565-639 18-101 (124)
96 1p1t_A Cleavage stimulation fa 99.4 6.1E-13 2.1E-17 119.6 7.2 72 568-639 6-87 (104)
97 2cpz_A CUG triplet repeat RNA- 99.4 1.1E-12 3.6E-17 120.8 8.8 73 568-640 23-105 (115)
98 2hzc_A Splicing factor U2AF 65 99.4 8.6E-13 3E-17 114.8 7.7 70 568-638 4-86 (87)
99 2cpd_A Apobec-1 stimulating pr 99.4 1.3E-12 4.6E-17 117.2 9.0 75 564-640 9-89 (99)
100 2dnm_A SRP46 splicing factor; 99.4 8.5E-13 2.9E-17 119.0 7.8 72 568-639 11-92 (103)
101 1x4h_A RNA-binding protein 28; 99.4 1.1E-12 3.9E-17 119.2 8.6 73 567-639 12-100 (111)
102 2khc_A Testis-specific RNP-typ 99.4 7.1E-13 2.4E-17 122.2 7.1 70 568-637 38-117 (118)
103 1x5p_A Negative elongation fac 99.4 1.1E-12 3.8E-17 117.6 8.2 70 568-639 13-86 (97)
104 2ek1_A RNA-binding protein 12; 99.4 5.1E-13 1.7E-17 118.3 5.9 71 569-639 14-94 (95)
105 3ulh_A THO complex subunit 4; 99.4 1.5E-12 5.1E-17 117.9 8.7 71 567-637 26-105 (107)
106 3zzy_A Polypyrimidine tract-bi 99.3 1.6E-12 5.5E-17 126.7 9.1 69 571-639 29-105 (130)
107 1x5u_A Splicing factor 3B subu 99.3 2.9E-12 9.9E-17 115.7 10.1 73 568-640 13-95 (105)
108 3tht_A Alkylated DNA repair pr 99.3 8.6E-13 2.9E-17 146.3 8.0 117 567-714 15-133 (345)
109 2kt5_A RNA and export factor-b 99.3 2.6E-12 9E-17 119.9 10.1 74 566-639 31-113 (124)
110 2krb_A Eukaryotic translation 99.3 1E-12 3.6E-17 114.2 6.8 62 570-631 1-72 (81)
111 2cpi_A CCR4-NOT transcription 99.3 8.7E-13 3E-17 121.7 6.7 72 569-640 14-101 (111)
112 2i2y_A Fusion protein consists 99.3 1.9E-12 6.4E-17 124.5 9.1 74 566-639 69-147 (150)
113 2jrs_A RNA-binding protein 39; 99.3 1.4E-12 4.8E-17 120.4 7.9 72 568-639 24-105 (108)
114 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 1.6E-12 5.5E-17 122.1 8.4 66 567-632 60-131 (140)
115 1x4c_A Splicing factor, argini 99.3 2.4E-12 8.2E-17 118.0 9.3 71 568-639 13-92 (108)
116 2dhg_A TRNA selenocysteine ass 99.3 1E-12 3.4E-17 118.5 6.5 72 568-639 7-89 (104)
117 1sjr_A Polypyrimidine tract-bi 99.3 1.4E-12 4.7E-17 131.8 8.2 71 570-640 46-124 (164)
118 3ucg_A Polyadenylate-binding p 99.3 1.7E-12 5.9E-17 113.4 7.6 70 569-639 5-84 (89)
119 2lkz_A RNA-binding protein 5; 99.3 1.7E-12 5.8E-17 118.9 7.8 71 569-639 8-94 (95)
120 2cqd_A RNA-binding region cont 99.3 3.4E-12 1.2E-16 117.6 9.5 72 568-640 15-96 (116)
121 2kxn_B Transformer-2 protein h 99.3 1.8E-12 6.3E-17 123.7 7.2 72 568-639 44-125 (129)
122 1wi8_A EIF-4B, eukaryotic tran 99.3 3E-12 1E-16 115.9 8.2 71 568-640 13-94 (104)
123 1wg1_A KIAA1579 protein, homol 99.3 2.8E-12 9.7E-17 113.3 7.6 70 569-639 4-77 (88)
124 1h2v_Z 20 kDa nuclear CAP bind 99.3 5.2E-12 1.8E-16 122.2 9.7 75 565-639 34-118 (156)
125 2jvr_A Nucleolar protein 3; RN 99.3 3.1E-12 1.1E-16 120.6 7.8 70 569-638 27-103 (111)
126 2cpx_A Hypothetical protein FL 99.3 3.3E-12 1.1E-16 117.0 7.7 73 568-640 23-105 (115)
127 2cqp_A RNA-binding protein 12; 99.3 2.9E-12 9.8E-17 114.4 7.1 71 568-638 13-93 (98)
128 3p5t_L Cleavage and polyadenyl 99.3 1.9E-12 6.6E-17 114.8 5.9 69 571-639 2-82 (90)
129 2bz2_A Negative elongation fac 99.3 6.3E-12 2.2E-16 119.0 9.0 70 568-639 37-110 (121)
130 2cq4_A RNA binding motif prote 99.3 3.1E-12 1.1E-16 117.6 6.5 71 568-639 23-103 (114)
131 2ki2_A SS-DNA binding protein 99.3 2.3E-12 7.7E-17 113.4 5.3 68 571-639 2-79 (90)
132 2jwn_A Embryonic polyadenylate 99.3 3.4E-12 1.2E-16 118.6 6.8 71 568-639 34-114 (124)
133 3ns6_A Eukaryotic translation 99.3 3.2E-12 1.1E-16 116.1 6.5 71 569-639 5-92 (100)
134 1fj7_A Nucleolin RBD1, protein 99.3 1E-11 3.4E-16 111.7 9.2 74 566-640 13-95 (101)
135 2dng_A Eukaryotic translation 99.3 8.1E-12 2.8E-16 112.9 8.7 71 568-640 13-93 (103)
136 1s79_A Lupus LA protein; RRM, 99.3 5.7E-12 1.9E-16 116.4 7.8 68 569-637 10-86 (103)
137 3egn_A RNA-binding protein 40; 99.3 4.4E-12 1.5E-16 121.1 7.1 72 568-639 43-129 (143)
138 2nlw_A Eukaryotic translation 99.3 4.4E-12 1.5E-16 116.0 6.7 71 568-638 13-98 (105)
139 2kn4_A Immunoglobulin G-bindin 99.3 8.6E-12 2.9E-16 120.2 9.1 75 566-640 66-150 (158)
140 2rs2_A Musashi-1, RNA-binding 99.3 7.1E-12 2.4E-16 115.7 7.8 76 563-639 18-103 (109)
141 3s7r_A Heterogeneous nuclear r 99.3 9.8E-12 3.4E-16 108.7 8.2 62 568-630 9-76 (87)
142 2m2b_A RNA-binding protein 10; 99.3 3.6E-12 1.2E-16 120.7 5.8 72 568-640 21-108 (131)
143 2fc9_A NCL protein; structure 99.3 5.6E-12 1.9E-16 113.3 6.7 73 568-640 13-91 (101)
144 2j76_E EIF-4B, EIF4B, eukaryot 99.3 3.3E-12 1.1E-16 115.6 5.2 72 566-639 15-97 (100)
145 3n9u_C Cleavage and polyadenyl 99.3 7.6E-12 2.6E-16 123.5 8.2 72 568-639 53-136 (156)
146 2mss_A Protein (musashi1); RNA 99.3 7.3E-12 2.5E-16 106.7 6.8 60 572-632 1-66 (75)
147 1uaw_A Mouse-musashi-1; RNP-ty 99.2 7.3E-12 2.5E-16 106.7 6.7 60 571-631 1-66 (77)
148 3nmr_A Cugbp ELAV-like family 99.2 1.2E-11 4E-16 118.0 8.9 70 569-638 94-175 (175)
149 2lea_A Serine/arginine-rich sp 99.2 7.7E-12 2.6E-16 120.1 7.6 73 568-640 45-127 (135)
150 3d2w_A TAR DNA-binding protein 99.2 1.2E-11 4.2E-16 110.7 8.3 59 568-630 9-68 (89)
151 2dh8_A DAZ-associated protein 99.2 5.5E-12 1.9E-16 114.1 6.0 73 566-639 12-94 (105)
152 1x4b_A Heterogeneous nuclear r 99.2 1.2E-11 4.1E-16 114.0 8.2 72 568-640 25-106 (116)
153 1rk8_A CG8781-PA, CG8781-PA pr 99.2 1.3E-11 4.3E-16 121.2 8.6 72 568-639 70-151 (165)
154 3u1l_A PRE-mRNA-splicing facto 99.2 9.9E-12 3.4E-16 131.9 8.4 72 568-639 132-228 (240)
155 1wf0_A TDP-43, TAR DNA-binding 99.2 1.1E-11 3.9E-16 109.0 7.3 55 568-622 3-58 (88)
156 3beg_B Splicing factor, argini 99.2 8.7E-12 3E-16 116.1 6.8 63 569-632 15-77 (115)
157 2cqg_A TDP-43, TAR DNA-binding 99.2 1.5E-11 5.2E-16 110.8 8.2 72 567-639 12-92 (103)
158 2e5g_A U6 snRNA-specific termi 99.2 1.1E-11 3.8E-16 110.5 6.8 70 568-638 6-80 (94)
159 2cpy_A RNA-binding protein 12; 99.2 1.9E-11 6.4E-16 113.3 8.4 73 565-638 10-92 (114)
160 3md3_A Nuclear and cytoplasmic 99.2 2.2E-11 7.4E-16 114.9 8.5 70 569-638 86-165 (166)
161 2e44_A Insulin-like growth fac 99.2 2.8E-11 9.6E-16 107.6 8.8 72 568-639 13-91 (96)
162 2fc8_A NCL protein; structure 99.2 2.6E-11 9E-16 108.9 8.5 73 568-640 13-92 (102)
163 2dnl_A Cytoplasmic polyadenyla 99.2 1.2E-11 4.2E-16 114.5 6.4 62 568-630 6-79 (114)
164 2dgw_A Probable RNA-binding pr 99.2 3.9E-11 1.3E-15 105.9 9.0 70 568-639 8-86 (91)
165 1qm9_A Polypyrimidine tract-bi 99.2 4E-11 1.4E-15 118.2 9.7 74 566-639 116-196 (198)
166 1wez_A HnRNP H', FTP-3, hetero 99.2 5.1E-11 1.7E-15 109.4 9.7 72 566-639 11-91 (102)
167 1iqt_A AUF1, heterogeneous nuc 99.2 1.6E-11 5.6E-16 104.3 5.9 59 572-631 1-65 (75)
168 2lcw_A RNA-binding protein FUS 98.8 2.1E-12 7.1E-17 119.3 0.0 73 568-640 5-95 (116)
169 3pgw_A U1-A; protein-RNA compl 99.2 4.6E-11 1.6E-15 124.1 9.5 75 564-638 201-281 (282)
170 2qfj_A FBP-interacting repress 99.2 4.3E-11 1.5E-15 118.3 8.9 73 567-639 122-204 (216)
171 1fxl_A Paraneoplastic encephal 99.2 5.2E-11 1.8E-15 112.4 8.9 64 569-632 87-156 (167)
172 1wel_A RNA-binding protein 12; 99.2 2.4E-11 8.1E-16 113.9 6.3 69 568-637 23-101 (124)
173 2f3j_A RNA and export factor b 99.2 6.7E-11 2.3E-15 118.8 9.9 73 567-639 85-166 (177)
174 2adc_A Polypyrimidine tract-bi 99.2 6E-11 2.1E-15 121.2 9.4 75 565-639 146-227 (229)
175 2xs2_A Deleted in azoospermia- 99.2 1.1E-11 3.8E-16 111.6 3.5 68 569-637 8-83 (102)
176 2g4b_A Splicing factor U2AF 65 99.2 4.5E-11 1.6E-15 114.2 7.8 68 570-637 94-171 (172)
177 2yh0_A Splicing factor U2AF 65 99.1 6.1E-11 2.1E-15 115.8 8.0 72 568-639 112-193 (198)
178 3q2s_C Cleavage and polyadenyl 99.1 4.8E-11 1.7E-15 124.2 7.4 71 569-639 67-149 (229)
179 1b7f_A Protein (SXL-lethal pro 99.1 1E-10 3.5E-15 111.1 8.9 63 569-631 88-156 (168)
180 4f02_A Polyadenylate-binding p 99.1 7.9E-11 2.7E-15 119.1 8.4 72 568-639 101-180 (213)
181 2db1_A Heterogeneous nuclear r 99.1 7.4E-11 2.5E-15 110.5 7.4 64 568-632 15-86 (118)
182 1wg5_A Heterogeneous nuclear r 99.1 1.8E-10 6.1E-15 105.1 8.7 64 568-632 13-82 (104)
183 2lmi_A GRSF-1, G-rich sequence 99.1 8.2E-11 2.8E-15 107.9 5.8 64 568-632 9-80 (107)
184 2hgl_A HNRPF protein, heteroge 99.1 1.4E-10 4.8E-15 112.9 7.3 63 569-632 43-113 (136)
185 2cjk_A Nuclear polyadenylated 99.1 1.2E-10 4.2E-15 110.7 6.8 71 568-639 85-165 (167)
186 2pe8_A Splicing factor 45; RRM 99.1 2.9E-10 9.8E-15 105.9 9.0 72 568-639 6-93 (105)
187 3tyt_A Heterogeneous nuclear r 99.1 1.9E-10 6.4E-15 117.5 8.2 66 566-631 119-190 (205)
188 3pgw_S U1-70K; protein-RNA com 99.1 1.7E-10 5.8E-15 130.8 8.6 72 568-639 100-181 (437)
189 1l3k_A Heterogeneous nuclear r 99.0 3.2E-10 1.1E-14 110.6 8.2 72 568-640 102-183 (196)
190 2dit_A HIV TAT specific factor 99.0 5.8E-10 2E-14 103.2 9.2 72 568-639 13-101 (112)
191 2diu_A KIAA0430 protein; struc 99.0 2.3E-10 7.9E-15 107.2 6.5 69 567-639 5-83 (96)
192 1fje_B Nucleolin RBD12, protei 99.0 1.9E-10 6.6E-15 110.7 6.1 71 569-639 98-173 (175)
193 3sde_A Paraspeckle component 1 99.0 4.1E-10 1.4E-14 117.4 8.2 83 557-639 83-178 (261)
194 2hgn_A Heterogeneous nuclear r 99.0 2.8E-10 9.6E-15 111.3 5.3 63 568-632 44-111 (139)
195 2dnn_A RNA-binding protein 12; 99.0 6.8E-10 2.3E-14 104.1 7.5 63 568-632 14-81 (109)
196 2kn4_A Immunoglobulin G-bindin 99.0 1.1E-09 3.7E-14 105.5 8.7 116 604-719 11-138 (158)
197 2dha_A FLJ20171 protein; RRM d 98.9 5.9E-10 2E-14 106.8 5.9 63 569-632 22-93 (123)
198 2voo_A Lupus LA protein; RNA-b 98.9 1.8E-09 6.2E-14 109.6 6.6 60 569-628 108-172 (193)
199 2hgm_A HNRPF protein, heteroge 98.8 3.3E-09 1.1E-13 102.4 7.0 62 568-631 40-108 (126)
200 2i2y_A Fusion protein consists 98.8 2E-09 6.9E-14 103.5 5.2 115 604-719 11-136 (150)
201 3v4m_A Splicing factor U2AF 65 98.8 5.6E-09 1.9E-13 97.1 7.9 72 568-639 3-96 (105)
202 2d9o_A DNAJ (HSP40) homolog, s 98.8 1.2E-08 4.2E-13 94.8 9.2 61 580-640 27-90 (100)
203 3ue2_A Poly(U)-binding-splicin 98.8 8.7E-09 3E-13 98.2 7.8 72 568-639 18-108 (118)
204 1jmt_A Splicing factor U2AF 35 98.7 3.7E-09 1.2E-13 98.0 3.7 58 575-632 20-94 (104)
205 2j8a_A Histone-lysine N-methyl 98.7 1.2E-08 4.1E-13 100.7 6.4 69 571-639 3-95 (136)
206 3s6e_A RNA-binding protein 39; 98.7 3.4E-08 1.2E-12 93.8 9.1 71 569-639 6-92 (114)
207 1owx_A Lupus LA protein, SS-B, 98.5 2.7E-07 9.4E-12 89.4 8.2 62 566-627 14-77 (121)
208 2lea_A Serine/arginine-rich sp 98.3 4.3E-07 1.5E-11 87.2 5.8 103 608-719 6-115 (135)
209 1rk8_A CG8781-PA, CG8781-PA pr 98.2 7.5E-07 2.6E-11 87.4 5.5 109 611-719 11-140 (165)
210 2e5h_A Zinc finger CCHC-type a 98.2 2.5E-06 8.5E-11 75.3 6.5 73 647-719 8-84 (94)
211 3pgw_S U1-70K; protein-RNA com 98.2 3.8E-07 1.3E-11 103.6 1.5 129 586-719 8-170 (437)
212 1why_A Hypothetical protein ri 98.1 4E-06 1.4E-10 74.9 6.7 66 652-719 14-79 (97)
213 3mdf_A Peptidyl-prolyl CIS-tra 98.1 2.6E-06 8.8E-11 73.7 5.3 68 652-719 4-75 (85)
214 2cpj_A Non-POU domain-containi 98.0 6.6E-06 2.3E-10 73.7 6.9 65 653-719 13-77 (99)
215 1x4a_A Splicing factor, argini 98.0 7.8E-06 2.7E-10 74.4 7.5 68 652-719 19-87 (109)
216 2dnq_A RNA-binding protein 4B; 98.0 5.9E-06 2E-10 72.8 6.4 63 653-719 6-68 (90)
217 3dxb_A Thioredoxin N-terminall 98.0 5.3E-06 1.8E-10 84.4 6.7 57 582-638 141-211 (222)
218 1wex_A Hypothetical protein (r 98.0 7.4E-06 2.5E-10 76.1 7.1 63 653-717 13-75 (104)
219 1x4e_A RNA binding motif, sing 98.0 1.2E-05 3.9E-10 69.9 7.6 67 653-719 3-73 (85)
220 2x1f_A MRNA 3'-END-processing 98.0 6.1E-06 2.1E-10 73.5 5.9 66 654-719 1-70 (96)
221 2la4_A Nuclear and cytoplasmic 98.0 8.1E-06 2.8E-10 73.2 6.5 64 654-719 26-89 (101)
222 1x5t_A Splicing factor 3B subu 98.0 7.2E-06 2.5E-10 72.5 6.1 67 653-719 3-74 (96)
223 2cqb_A Peptidyl-prolyl CIS-tra 98.0 8.1E-06 2.8E-10 73.1 6.5 68 652-719 9-80 (102)
224 2e5j_A Methenyltetrahydrofolat 98.0 1.3E-05 4.5E-10 71.6 7.7 66 653-719 17-82 (97)
225 3r27_A HnRNP L, heterogeneous 98.0 7.7E-06 2.6E-10 76.6 6.2 62 653-716 19-80 (100)
226 2hgl_A HNRPF protein, heteroge 98.0 5.2E-06 1.8E-10 80.8 5.3 107 606-719 1-113 (136)
227 1whw_A Hypothetical protein ri 98.0 7.8E-06 2.7E-10 72.9 5.9 68 652-719 5-76 (99)
228 2dgu_A Heterogeneous nuclear r 98.0 6.9E-06 2.4E-10 74.2 5.6 64 652-719 8-71 (103)
229 2cq3_A RNA-binding protein 9; 98.0 1.4E-05 4.9E-10 71.9 7.6 68 652-719 12-81 (103)
230 2cqc_A Arginine/serine-rich sp 98.0 8.8E-06 3E-10 71.7 6.0 68 652-719 12-83 (95)
231 1x4d_A Matrin 3; structural ge 98.0 9.6E-06 3.3E-10 75.7 6.5 63 653-717 13-76 (102)
232 2do0_A HnRNP M, heterogeneous 98.0 9.4E-06 3.2E-10 74.1 6.2 67 653-719 13-82 (114)
233 2jvo_A Nucleolar protein 3; nu 98.0 9.7E-06 3.3E-10 74.9 6.4 63 653-719 29-91 (108)
234 2cqi_A Nucleolysin TIAR; RNA r 97.9 1.3E-05 4.4E-10 72.2 6.9 67 653-719 13-81 (103)
235 2cpx_A Hypothetical protein FL 97.9 8E-06 2.7E-10 74.7 5.6 67 653-719 23-93 (115)
236 2dnz_A Probable RNA-binding pr 97.9 1.2E-05 4.3E-10 70.9 6.6 67 653-719 3-73 (95)
237 2kvi_A Nuclear polyadenylated 97.9 1.1E-05 3.7E-10 72.2 6.3 63 653-719 8-71 (96)
238 3lqv_A PRE-mRNA branch site pr 97.9 9.8E-06 3.4E-10 74.3 6.0 67 653-719 6-73 (115)
239 2fc9_A NCL protein; structure 97.9 1.2E-05 4E-10 72.2 6.3 68 652-719 12-79 (101)
240 2cpe_A RNA-binding protein EWS 97.9 1.9E-05 6.6E-10 72.1 7.8 68 652-719 12-91 (113)
241 3bs9_A Nucleolysin TIA-1 isofo 97.9 7.7E-06 2.6E-10 71.0 4.8 67 653-719 4-74 (87)
242 2div_A TRNA selenocysteine ass 97.9 7.6E-06 2.6E-10 73.0 4.9 68 652-719 6-78 (99)
243 2dgt_A RNA-binding protein 30; 97.9 1.2E-05 4.1E-10 71.1 6.0 63 653-719 8-70 (92)
244 2cqh_A IGF-II mRNA-binding pro 97.9 1.3E-05 4.5E-10 70.8 6.2 64 653-719 6-71 (93)
245 2cq0_A Eukaryotic translation 97.9 9.2E-06 3.2E-10 73.1 5.2 67 653-719 13-83 (103)
246 4a8x_A RNA-binding protein wit 97.9 1E-05 3.4E-10 70.2 5.1 66 654-719 3-73 (88)
247 2dgv_A HnRNP M, heterogeneous 97.9 1.2E-05 4.1E-10 70.6 5.6 68 652-719 5-74 (92)
248 2d9p_A Polyadenylate-binding p 97.9 1.3E-05 4.5E-10 72.1 5.9 67 653-719 13-81 (103)
249 2xnq_A Nuclear polyadenylated 97.9 1.3E-05 4.4E-10 72.5 5.8 63 653-719 20-83 (97)
250 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.9 1.5E-05 5.2E-10 74.7 6.5 68 652-719 60-131 (140)
251 2cph_A RNA binding motif prote 97.9 1.9E-05 6.4E-10 71.2 6.8 67 653-719 13-85 (107)
252 1x5s_A Cold-inducible RNA-bind 97.9 2.1E-05 7.2E-10 70.4 7.1 68 652-719 9-80 (102)
253 2dnp_A RNA-binding protein 14; 97.9 1.1E-05 3.7E-10 71.1 5.0 63 653-719 7-69 (90)
254 2dgp_A Bruno-like 4, RNA bindi 97.9 1.5E-05 5.1E-10 71.9 6.0 67 652-718 10-80 (106)
255 2do4_A Squamous cell carcinoma 97.9 1.6E-05 5.5E-10 71.1 6.0 67 653-719 15-84 (100)
256 2dgo_A Cytotoxic granule-assoc 97.9 1.5E-05 5.2E-10 73.0 6.0 67 653-719 13-83 (115)
257 2cq1_A PTB-like protein L; RRM 97.9 1.4E-05 4.9E-10 73.9 5.8 62 652-715 12-73 (101)
258 1x4f_A Matrin 3; structural ge 97.9 1.4E-05 4.8E-10 76.0 5.8 63 653-717 23-86 (112)
259 2ek1_A RNA-binding protein 12; 97.9 1.5E-05 5.2E-10 70.3 5.6 67 653-719 13-83 (95)
260 3md1_A Nuclear and cytoplasmic 97.9 1.3E-05 4.4E-10 69.0 5.0 65 655-719 1-69 (83)
261 2cpf_A RNA binding motif prote 97.9 8.1E-06 2.8E-10 72.6 3.9 67 653-719 3-76 (98)
262 2cq2_A Hypothetical protein LO 97.9 8.4E-06 2.9E-10 78.0 4.2 64 653-718 23-88 (114)
263 2ywk_A Putative RNA-binding pr 97.9 1.4E-05 4.8E-10 70.6 5.3 68 652-719 13-83 (95)
264 2ad9_A Polypyrimidine tract-bi 97.9 1.7E-05 5.7E-10 76.3 6.2 62 653-716 29-90 (119)
265 2cpd_A Apobec-1 stimulating pr 97.8 1.4E-05 4.7E-10 71.6 5.3 65 653-719 13-77 (99)
266 2krb_A Eukaryotic translation 97.8 9.8E-06 3.3E-10 70.3 4.2 65 655-719 1-73 (81)
267 3ex7_B RNA-binding protein 8A; 97.8 1.6E-05 5.6E-10 73.9 5.9 67 653-719 20-90 (126)
268 2dgs_A DAZ-associated protein 97.8 1.9E-05 6.4E-10 70.6 6.0 67 652-719 7-77 (99)
269 4fxv_A ELAV-like protein 1; RN 97.8 1.2E-05 4.2E-10 73.3 4.9 65 655-719 19-87 (99)
270 1x5u_A Splicing factor 3B subu 97.8 2E-05 7E-10 70.9 6.2 67 653-719 13-83 (105)
271 1oo0_B CG8781-PA, drosophila Y 97.8 1.9E-05 6.5E-10 71.8 6.1 67 653-719 24-94 (110)
272 1nu4_A U1A RNA binding domain; 97.8 9E-06 3.1E-10 72.1 3.8 67 653-719 6-77 (97)
273 1p1t_A Cleavage stimulation fa 97.8 9.6E-06 3.3E-10 72.7 4.0 67 653-719 6-76 (104)
274 4f25_A Polyadenylate-binding p 97.8 1.2E-05 4.1E-10 74.6 4.8 65 655-719 5-71 (115)
275 1whx_A Hypothetical protein ri 97.8 1.6E-05 5.6E-10 73.6 5.7 64 654-719 9-72 (111)
276 2dnm_A SRP46 splicing factor; 97.8 1.2E-05 4E-10 72.4 4.6 67 653-719 11-81 (103)
277 1p27_B RNA-binding protein 8A; 97.8 1.8E-05 6.2E-10 71.3 5.8 66 654-719 22-91 (106)
278 2cpz_A CUG triplet repeat RNA- 97.8 1.7E-05 5.7E-10 72.9 5.6 66 654-719 24-93 (115)
279 1x4c_A Splicing factor, argini 97.8 2.1E-05 7.3E-10 71.9 6.2 63 653-718 13-75 (108)
280 1wf1_A RNA-binding protein RAL 97.8 1.7E-05 5.7E-10 72.5 5.4 62 654-719 26-88 (110)
281 2cpi_A CCR4-NOT transcription 97.8 1.6E-05 5.6E-10 73.2 5.4 70 650-719 10-89 (111)
282 2dnh_A Bruno-like 5, RNA bindi 97.8 1.6E-05 5.6E-10 71.5 5.3 66 653-718 13-81 (105)
283 1wg1_A KIAA1579 protein, homol 97.8 2.3E-05 7.8E-10 69.1 6.0 63 654-719 4-66 (88)
284 2la6_A RNA-binding protein FUS 97.8 2.4E-05 8.2E-10 70.1 6.2 67 653-719 11-89 (99)
285 2hzc_A Splicing factor U2AF 65 97.8 2.3E-05 7.8E-10 68.0 5.9 67 652-719 3-78 (87)
286 2lxi_A RNA-binding protein 10; 97.8 1.7E-05 5.7E-10 71.1 5.1 60 655-714 1-65 (91)
287 2ytc_A PRE-mRNA-splicing facto 97.8 1.5E-05 5.1E-10 69.0 4.4 64 653-718 10-74 (85)
288 2hvz_A Splicing factor, argini 97.8 3E-05 1E-09 69.5 6.4 63 656-719 1-63 (101)
289 3ulh_A THO complex subunit 4; 97.8 1.9E-05 6.4E-10 71.4 5.0 67 653-719 27-96 (107)
290 1x4h_A RNA-binding protein 28; 97.8 2.1E-05 7.2E-10 71.3 5.3 62 653-714 13-78 (111)
291 2dgx_A KIAA0430 protein; RRM d 97.8 2.5E-05 8.5E-10 70.1 5.6 67 653-719 7-78 (96)
292 2lkz_A RNA-binding protein 5; 97.8 3E-05 1E-09 70.9 6.2 66 652-717 6-77 (95)
293 2dnl_A Cytoplasmic polyadenyla 97.8 2.8E-05 9.7E-10 71.9 6.0 60 653-713 6-72 (114)
294 2err_A Ataxin-2-binding protei 97.8 3.8E-05 1.3E-09 70.6 6.8 68 652-719 26-95 (109)
295 1sjq_A Polypyrimidine tract-bi 97.8 2.4E-05 8.2E-10 73.8 5.6 60 654-715 15-74 (105)
296 2dis_A Unnamed protein product 97.8 1.7E-05 5.9E-10 71.8 4.4 61 654-714 7-73 (109)
297 3s8s_A Histone-lysine N-methyl 97.7 2.1E-05 7.3E-10 73.2 5.0 67 653-719 4-74 (110)
298 2cqp_A RNA-binding protein 12; 97.7 4.8E-05 1.6E-09 67.7 7.0 68 652-719 12-83 (98)
299 1fjc_A Nucleolin RBD2, protein 97.7 2E-05 6.9E-10 69.8 4.4 67 652-719 13-79 (96)
300 1x4g_A Nucleolysin TIAR; struc 97.7 3E-05 1E-09 70.8 5.5 64 654-719 24-87 (109)
301 2kt5_A RNA and export factor-b 97.7 5.3E-05 1.8E-09 70.6 7.1 68 652-719 32-102 (124)
302 2khc_A Testis-specific RNP-typ 97.7 1.9E-05 6.6E-10 72.6 4.1 66 654-719 39-108 (118)
303 2dnr_A Synaptojanin-1; RRM dom 97.7 6.5E-05 2.2E-09 70.0 7.5 52 585-639 30-85 (91)
304 2e44_A Insulin-like growth fac 97.7 4.1E-05 1.4E-09 67.9 5.9 66 654-719 14-80 (96)
305 2fy1_A RNA-binding motif prote 97.7 4.1E-05 1.4E-09 71.4 6.1 67 653-719 5-74 (116)
306 1fj7_A Nucleolin RBD1, protein 97.7 2.9E-05 9.9E-10 69.6 4.9 66 653-719 15-83 (101)
307 2cqd_A RNA-binding region cont 97.7 2.9E-05 1E-09 71.4 4.9 68 652-719 14-85 (116)
308 2kxn_B Transformer-2 protein h 97.7 3.6E-05 1.2E-09 73.5 5.6 67 653-719 44-114 (129)
309 2dhg_A TRNA selenocysteine ass 97.7 2.7E-05 9.3E-10 70.0 4.5 65 653-717 7-75 (104)
310 2jrs_A RNA-binding protein 39; 97.7 3.2E-05 1.1E-09 71.3 5.0 67 653-719 24-94 (108)
311 3ns6_A Eukaryotic translation 97.7 4.3E-05 1.5E-09 69.2 5.7 67 653-719 4-80 (100)
312 3beg_B Splicing factor, argini 97.7 3.7E-05 1.3E-09 71.5 5.2 63 654-719 15-77 (115)
313 2jvr_A Nucleolar protein 3; RN 97.7 4.3E-05 1.5E-09 72.1 5.5 67 653-719 26-93 (111)
314 1u6f_A Tcubp1, RNA-binding pro 97.6 2.9E-05 9.8E-10 73.4 4.3 67 653-719 40-110 (139)
315 3p5t_L Cleavage and polyadenyl 97.6 4.5E-05 1.6E-09 67.4 5.1 64 656-719 2-71 (90)
316 1wi8_A EIF-4B, eukaryotic tran 97.6 4.7E-05 1.6E-09 68.8 5.1 66 652-719 12-82 (104)
317 3ucg_A Polyadenylate-binding p 97.6 3.5E-05 1.2E-09 67.1 4.1 65 654-719 5-73 (89)
318 2nlw_A Eukaryotic translation 97.6 3.5E-05 1.2E-09 70.3 4.2 67 653-719 13-87 (105)
319 1x5o_A RNA binding motif, sing 97.6 6.4E-05 2.2E-09 68.7 5.9 67 653-719 23-92 (114)
320 2cq4_A RNA binding motif prote 97.6 4.2E-05 1.5E-09 70.1 4.6 65 654-719 24-92 (114)
321 2fc8_A NCL protein; structure 97.6 3.4E-05 1.2E-09 69.1 3.8 64 653-719 13-80 (102)
322 2db1_A Heterogeneous nuclear r 97.6 6.1E-05 2.1E-09 70.4 5.5 72 647-719 9-86 (118)
323 1uaw_A Mouse-musashi-1; RNP-ty 97.6 6.1E-05 2.1E-09 63.9 4.8 59 656-714 1-63 (77)
324 2e5g_A U6 snRNA-specific termi 97.6 5.9E-05 2E-09 67.1 4.8 65 653-719 6-70 (94)
325 2mss_A Protein (musashi1); RNA 97.6 5.4E-05 1.8E-09 64.2 4.4 61 657-718 1-65 (75)
326 2hgn_A Heterogeneous nuclear r 97.6 2.7E-05 9.1E-10 76.2 2.8 106 606-719 1-111 (139)
327 2j76_E EIF-4B, EIF4B, eukaryot 97.6 4.6E-05 1.6E-09 68.8 4.2 65 653-719 17-86 (100)
328 3egn_A RNA-binding protein 40; 97.6 5.5E-05 1.9E-09 72.1 4.8 67 653-719 43-118 (143)
329 2a3j_A U1 small nuclear ribonu 97.5 6.1E-05 2.1E-09 72.5 5.1 67 653-719 27-98 (127)
330 1h2v_Z 20 kDa nuclear CAP bind 97.5 5.7E-05 2E-09 73.0 4.9 67 653-719 37-107 (156)
331 2dh8_A DAZ-associated protein 97.5 4.4E-05 1.5E-09 68.9 3.8 68 651-719 12-83 (105)
332 1s79_A Lupus LA protein; RRM, 97.5 7.6E-05 2.6E-09 68.9 5.5 65 652-717 8-75 (103)
333 2cqg_A TDP-43, TAR DNA-binding 97.5 7.9E-05 2.7E-09 67.0 5.0 61 652-712 12-76 (103)
334 2wbr_A GW182, gawky, LD47780P; 97.5 0.00011 3.7E-09 68.2 6.0 64 654-719 6-69 (89)
335 2m2b_A RNA-binding protein 10; 97.5 9.6E-05 3.3E-09 69.9 5.6 63 653-716 21-89 (131)
336 3tht_A Alkylated DNA repair pr 97.5 6E-05 2E-09 84.1 4.7 64 653-718 16-81 (345)
337 2dng_A Eukaryotic translation 97.5 0.0001 3.5E-09 66.4 5.2 65 653-719 13-81 (103)
338 3n9u_C Cleavage and polyadenyl 97.5 6.8E-05 2.3E-09 74.0 4.4 66 654-719 54-125 (156)
339 2lmi_A GRSF-1, G-rich sequence 97.5 0.00014 4.9E-09 66.4 6.2 67 652-719 8-80 (107)
340 2rs2_A Musashi-1, RNA-binding 97.4 7.1E-05 2.4E-09 69.0 4.0 61 654-714 24-88 (109)
341 2jwn_A Embryonic polyadenylate 97.4 5.3E-05 1.8E-09 70.3 3.1 65 654-719 35-103 (124)
342 2f3j_A RNA and export factor b 97.4 0.00015 5E-09 72.9 6.4 68 652-719 85-155 (177)
343 1ufw_A Synaptojanin 2; RNP dom 97.4 0.00021 7.1E-09 67.2 6.8 62 568-632 13-83 (95)
344 2dgw_A Probable RNA-binding pr 97.4 0.00011 3.9E-09 64.5 4.7 65 653-719 8-75 (91)
345 3zzy_A Polypyrimidine tract-bi 97.4 0.00013 4.4E-09 71.4 5.4 70 648-718 19-91 (130)
346 1x5p_A Negative elongation fac 97.4 0.00014 4.9E-09 64.9 5.1 62 654-719 14-75 (97)
347 2cpy_A RNA-binding protein 12; 97.4 0.0002 6.9E-09 66.2 6.2 66 653-719 13-82 (114)
348 3s7r_A Heterogeneous nuclear r 97.4 7.7E-05 2.6E-09 64.9 3.2 61 653-713 9-73 (87)
349 3u1l_A PRE-mRNA-splicing facto 97.4 0.00013 4.3E-09 77.9 5.3 64 653-718 132-204 (240)
350 2ki2_A SS-DNA binding protein 97.4 6.3E-05 2.1E-09 65.9 2.5 63 656-719 2-68 (90)
351 1sjr_A Polypyrimidine tract-bi 97.4 0.00014 4.8E-09 73.8 5.1 65 654-718 45-109 (164)
352 1wel_A RNA-binding protein 12; 97.3 0.00011 3.8E-09 68.7 3.8 66 653-719 23-92 (124)
353 1wg5_A Heterogeneous nuclear r 97.3 0.00022 7.5E-09 64.9 5.6 66 653-719 13-82 (104)
354 1x4b_A Heterogeneous nuclear r 97.3 0.00016 5.5E-09 66.4 4.7 65 654-719 26-94 (116)
355 2lcw_A RNA-binding protein FUS 96.4 3.6E-05 1.2E-09 70.9 0.0 66 654-719 6-83 (116)
356 2e5i_A Heterogeneous nuclear r 97.3 0.00027 9.3E-09 68.3 5.7 61 656-718 26-87 (124)
357 2bz2_A Negative elongation fac 97.2 0.00045 1.5E-08 65.3 6.8 63 653-719 37-99 (121)
358 1wf0_A TDP-43, TAR DNA-binding 97.2 0.00028 9.6E-09 61.8 4.9 56 653-709 3-58 (88)
359 2xs2_A Deleted in azoospermia- 97.2 5.5E-05 1.9E-09 67.9 0.3 67 653-719 7-79 (102)
360 2z73_A Rhodopsin; visual pigme 97.1 6.5E-05 2.2E-09 81.9 0.0 8 347-354 132-139 (448)
361 3d2w_A TAR DNA-binding protein 97.1 0.0004 1.4E-08 62.1 5.1 59 649-708 5-63 (89)
362 1iqt_A AUF1, heterogeneous nuc 97.1 0.00023 7.8E-09 60.2 3.3 56 657-712 1-60 (75)
363 2dit_A HIV TAT specific factor 97.1 0.00097 3.3E-08 61.5 7.7 67 653-719 13-90 (112)
364 1wez_A HnRNP H', FTP-3, hetero 97.1 0.00036 1.2E-08 63.9 4.2 66 652-719 12-80 (102)
365 3q2s_C Cleavage and polyadenyl 97.0 0.0002 6.8E-09 74.7 2.4 65 654-718 67-137 (229)
366 2hgm_A HNRPF protein, heteroge 97.0 0.00039 1.3E-08 67.2 3.9 60 654-714 41-105 (126)
367 2pe8_A Splicing factor 45; RRM 96.9 0.0013 4.6E-08 61.1 6.2 67 653-719 6-82 (105)
368 2diu_A KIAA0430 protein; struc 96.8 0.001 3.6E-08 62.6 5.2 63 654-719 7-72 (96)
369 2dnn_A RNA-binding protein 12; 96.8 0.0011 3.7E-08 62.2 5.2 64 654-719 15-81 (109)
370 2dha_A FLJ20171 protein; RRM d 96.8 0.0012 4.2E-08 63.2 5.5 65 654-719 22-93 (123)
371 2voo_A Lupus LA protein; RNA-b 96.6 0.0011 3.6E-08 67.5 3.4 64 654-717 108-174 (193)
372 1wey_A Calcipressin 1; structu 96.4 0.0054 1.9E-07 58.5 6.9 70 570-639 5-83 (104)
373 3s6e_A RNA-binding protein 39; 95.8 0.014 4.7E-07 55.5 6.7 70 650-719 2-81 (114)
374 3v4m_A Splicing factor U2AF 65 95.7 0.013 4.5E-07 54.3 5.8 67 653-719 3-85 (105)
375 1uw4_A UPF3X; nonsense mediate 95.5 0.037 1.3E-06 51.5 8.0 60 571-630 2-69 (91)
376 3ue2_A Poly(U)-binding-splicin 95.0 0.021 7E-07 54.5 4.7 66 654-719 19-97 (118)
377 1owx_A Lupus LA protein, SS-B, 94.4 0.062 2.1E-06 52.2 6.6 60 652-714 15-77 (121)
378 2l9w_A U4/U6 snRNA-associated- 94.4 0.087 3E-06 51.2 7.5 62 570-631 21-87 (117)
379 1jmt_A Splicing factor U2AF 35 93.8 0.038 1.3E-06 51.1 3.5 50 670-719 41-94 (104)
380 3pq1_A Poly(A) RNA polymerase; 93.5 0.029 1E-06 65.0 2.8 55 567-622 50-105 (464)
381 2d9o_A DNAJ (HSP40) homolog, s 92.1 0.09 3.1E-06 48.8 3.4 50 666-716 28-77 (100)
382 3u0r_A Apoptosis inhibitor 5; 91.5 0.43 1.5E-05 55.9 9.0 142 54-263 6-147 (507)
383 1wwh_A Nucleoporin 35, nucleop 90.9 0.52 1.8E-05 46.0 7.5 75 555-631 9-83 (119)
384 3h0g_A DNA-directed RNA polyme 90.1 0.056 1.9E-06 71.0 0.0 15 56-70 273-287 (1752)
385 3h0g_A DNA-directed RNA polyme 89.8 0.061 2.1E-06 70.7 0.0 32 132-163 611-643 (1752)
386 2dhx_A Poly (ADP-ribose) polym 89.4 0.96 3.3E-05 43.4 7.7 63 568-632 6-77 (104)
387 1whv_A Poly(A)-specific ribonu 88.6 0.96 3.3E-05 43.1 7.1 62 571-635 17-78 (100)
388 2l08_A Regulator of nonsense t 88.3 0.51 1.7E-05 44.6 5.0 61 570-630 9-77 (97)
389 2j8a_A Histone-lysine N-methyl 87.9 0.23 8E-06 49.4 2.6 64 656-719 3-84 (136)
390 3dxb_A Thioredoxin N-terminall 87.1 0.34 1.2E-05 49.1 3.4 52 667-718 141-200 (222)
391 3ctr_A Poly(A)-specific ribonu 86.2 0.54 1.9E-05 44.8 3.9 55 572-630 8-63 (101)
392 3d45_A Poly(A)-specific ribonu 81.5 2.3 7.8E-05 49.7 7.4 62 569-634 439-501 (507)
393 1ow1_A Smart/HDAC1 associated 67.4 1.7 5.7E-05 45.7 1.3 125 1008-1135 35-171 (195)
394 2l9w_A U4/U6 snRNA-associated- 66.7 9.3 0.00032 37.4 6.1 65 655-719 21-88 (117)
395 2h8h_A Proto-oncogene tyrosine 56.1 2.4 8.1E-05 48.7 0.0 8 1092-1099 225-232 (535)
396 2dnr_A Synaptojanin-1; RRM dom 54.9 5.3 0.00018 37.4 2.1 51 666-719 22-74 (91)
397 1ufw_A Synaptojanin 2; RNP dom 53.8 8.8 0.0003 36.2 3.4 61 656-719 16-83 (95)
398 1whv_A Poly(A)-specific ribonu 52.4 37 0.0013 32.5 7.3 55 656-715 17-71 (100)
399 1wey_A Calcipressin 1; structu 35.8 23 0.0008 33.9 3.3 61 655-717 5-70 (104)
400 3p3d_A Nucleoporin 53; structu 35.6 22 0.00077 35.3 3.2 46 580-625 16-81 (132)
401 3pm9_A Putative oxidoreductase 29.1 46 0.0016 38.4 4.9 77 563-639 177-267 (476)
402 4bby_A Alkyldihydroxyacetoneph 29.0 36 0.0012 40.8 4.1 78 562-639 334-423 (658)
403 2uuu_A Alkyldihydroxyacetoneph 28.3 31 0.0011 41.0 3.4 77 563-639 266-353 (584)
404 1twf_A B220, DNA-directed RNA 24.7 16 0.00053 48.9 0.0 7 703-709 1341-1347(1733)
405 4ffe_X CPXV018 protein; viral 24.4 24 0.00083 34.6 1.3 21 242-262 50-70 (151)
406 1twf_A B220, DNA-directed RNA 22.4 18 0.00063 48.2 0.0 9 61-69 272-280 (1733)
No 1
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.85 E-value=7.9e-21 Score=179.49 Aligned_cols=142 Identities=18% Similarity=0.204 Sum_probs=120.3
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCC------ceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK------GFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~r------gfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
.+++||||||+.+++++||+++|++||+|.++.+.+.+ |||||+|.+.+||..|++.|+|..+. +|++++
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999997654 99999999999999999999998765 777776
Q ss_pred ccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHh
Q 001097 639 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLR 714 (1158)
Q Consensus 639 ~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~ 714 (1158)
+.. .....+.|||++++..++.++|...|..+|.+..+.+. + ...++.++|||.+.++|..|++.|+
T Consensus 81 ~~~---------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 81 PSS---------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp CCC---------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCc---------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 521 12357899999999999999999999987655555442 2 2246789999999999999999999
Q ss_pred hhccc
Q 001097 715 QHRKS 719 (1158)
Q Consensus 715 ~~r~~ 719 (1158)
++..+
T Consensus 152 g~~~~ 156 (167)
T 1fxl_A 152 GQKPS 156 (167)
T ss_dssp TCCCT
T ss_pred CCccC
Confidence 97654
No 2
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.84 E-value=1.3e-20 Score=179.72 Aligned_cols=143 Identities=17% Similarity=0.208 Sum_probs=118.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe--------cCCceEEEEecCHHHHHHHHHhhcCCcee-------
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF--------PIKGFALVEYINIIDAIRAREYIRNHFSW------- 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~--------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~------- 632 (1158)
+.+++||||||+.+++++||+++|++||+|.++++. ..||||||+|.+.++|.+|++.|+|..+.
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 357899999999999999999999999999999986 46799999999999999999999997653
Q ss_pred EEEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCCeeeccccCHHHHHHH
Q 001097 633 RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTA 709 (1158)
Q Consensus 633 RI~F~r~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d--lseK~~LpVEF~t~edA~~A 709 (1158)
++.+.+..-. .....+.||||+++..+++++|...|..++.+..+.+. + ...++.++|+|++.++|..|
T Consensus 81 ~~~~~~~~~~--------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 81 QMKPADSEKN--------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp EEEECGGGCC--------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHH
T ss_pred EEcccccccc--------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHH
Confidence 5555544211 12368899999999999999999999987765555442 2 23366799999999999999
Q ss_pred HHHHhhhcc
Q 001097 710 MAHLRQHRK 718 (1158)
Q Consensus 710 m~~l~~~r~ 718 (1158)
++.|+++..
T Consensus 153 ~~~l~g~~~ 161 (175)
T 3nmr_A 153 IKAMHQAQT 161 (175)
T ss_dssp HHHHTTSCC
T ss_pred HHHhcCCcc
Confidence 999998753
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.5e-20 Score=177.45 Aligned_cols=142 Identities=16% Similarity=0.223 Sum_probs=120.1
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccC
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 641 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~ 641 (1158)
|+||||||+.+++++||++.|++||+|.+|++.+ .+|||||+|.+.++|.+|++.|+|..+. +|+++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 6899999999999999999999999999999964 4699999999999999999999999775 777775532
Q ss_pred CCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 642 g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
.. ...+++.|||++++..++.++|...|..++.+..+.+. + ...++.++|+|++.++|..|++.|+++.
T Consensus 81 ~~-------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 81 QS-------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CC-------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CC-------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 11 13468899999999999999999999887765555442 2 3446689999999999999999999876
Q ss_pred cc
Q 001097 718 KS 719 (1158)
Q Consensus 718 ~~ 719 (1158)
.+
T Consensus 154 ~~ 155 (166)
T 3md3_A 154 LN 155 (166)
T ss_dssp ET
T ss_pred cC
Confidence 54
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.83 E-value=2.1e-20 Score=177.69 Aligned_cols=141 Identities=16% Similarity=0.204 Sum_probs=119.7
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
++++||||||+.+++++||++.|++||+|.++++.+ .+|||||+|.+.++|..|++.|+|..+. +|++++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 579999999999999999999999999999999865 4589999999999999999999998765 777776
Q ss_pred ccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee----cCCCCCeeeccccCHHHHHHHHHHHh
Q 001097 639 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLR 714 (1158)
Q Consensus 639 ~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~----dlseK~~LpVEF~t~edA~~Am~~l~ 714 (1158)
+... ...++.|||++++..+++++|...|..++.+..+.+. ....++.++|||.+.++|..|++.|+
T Consensus 82 ~~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 152 (168)
T 1b7f_A 82 PGGE---------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 152 (168)
T ss_dssp CCSS---------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCcc---------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 5311 2367899999999999999999999987655554432 12335789999999999999999999
Q ss_pred hhcc
Q 001097 715 QHRK 718 (1158)
Q Consensus 715 ~~r~ 718 (1158)
++..
T Consensus 153 g~~~ 156 (168)
T 1b7f_A 153 NVIP 156 (168)
T ss_dssp TCCC
T ss_pred CCEe
Confidence 9864
No 5
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.82 E-value=1.3e-19 Score=184.82 Aligned_cols=151 Identities=17% Similarity=0.138 Sum_probs=120.7
Q ss_pred cCceEEeccCC-CccCHHHHHHHhhccCCcceEEEec-CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccCC
Q 001097 569 ASKQLWLGSFG-PEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLG 642 (1158)
Q Consensus 569 ~S~~LWVGnL~-~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~g 642 (1158)
+++.||||||+ .++++++|+.+|++||.|.+|++.+ .||||||+|.+.++|..|++.|+|..+. +|+|++....
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 57899999999 7999999999999999999999987 6899999999999999999999999775 7888753210
Q ss_pred C--------------Ccc----cccc----------cccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCC---
Q 001097 643 T--------------KGV----INGV----------AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS--- 691 (1158)
Q Consensus 643 ~--------------rg~----~~Gv----------a~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dls--- 691 (1158)
. +.. .+.. ...+++.|||+++|..++.|+|..-|..++.+....+..+.
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 0 000 0000 01357889999999999999999999987766223332222
Q ss_pred -CCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 692 -CEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 692 -eK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.++.++|||++.|||..|++.|+++...
T Consensus 163 ~~~g~gfV~f~~~~~A~~Ai~~lng~~~~ 191 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDALETLGFLNHYQMK 191 (205)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHTTCEEC
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCCcc
Confidence 2478999999999999999999998755
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.81 E-value=3.9e-20 Score=186.92 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=118.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
.++++||||||+.+++|++|+++|++||+|.+|++.+ .+|||||+|.+.+||..|++.|+|..+. |+.+.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 4678999999999999999999999999999999853 5789999999999999999999998764 55555
Q ss_pred eccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c-CCCCCeeeccccCHHHHHHHHHHHhh
Q 001097 638 DVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D-LSCEGALLMEFRTPEEATTAMAHLRQ 715 (1158)
Q Consensus 638 r~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d-lseK~~LpVEF~t~edA~~Am~~l~~ 715 (1158)
.... .......+.||||+++..+++++|..-|..++.+..+.+. + -..++.++|+|++.++|..|++.|++
T Consensus 93 ~~~~-------~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 93 QRDP-------SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp CCCT-------HHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cccc-------cccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 3310 0112256789999999999999999999987766555442 2 23577899999999999999999998
Q ss_pred hccc
Q 001097 716 HRKS 719 (1158)
Q Consensus 716 ~r~~ 719 (1158)
+..+
T Consensus 166 ~~~~ 169 (213)
T 4f02_A 166 MLLN 169 (213)
T ss_dssp CEET
T ss_pred CEEC
Confidence 7755
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.80 E-value=7.4e-20 Score=180.98 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=121.5
Q ss_pred cccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EE
Q 001097 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 634 (1158)
Q Consensus 565 dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI 634 (1158)
+-...+++||||||+.+++++||+++|++||+|.+|.+.+ .+|||||+|.+.++|..|++.|+|..+. +|
T Consensus 23 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 23 GALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred cccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 3455689999999999999999999999999999999954 5899999999999999999999998776 44
Q ss_pred EEeeccCCCCccccc--ccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHH
Q 001097 635 KFMDVGLGTKGVING--VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATT 708 (1158)
Q Consensus 635 ~F~r~~~g~rg~~~G--va~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~ 708 (1158)
.+............. ......+.|||++++..+++|+|...|..++.+..+.+. + ...++.++|+|++.++|..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 103 GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp ECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred ecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 443221000000000 011357899999999999999999999987755555442 2 2346789999999999999
Q ss_pred HHHHHhhhccc
Q 001097 709 AMAHLRQHRKS 719 (1158)
Q Consensus 709 Am~~l~~~r~~ 719 (1158)
|++.|+++..+
T Consensus 183 A~~~l~g~~~~ 193 (216)
T 2qfj_A 183 AVSSMNLFDLG 193 (216)
T ss_dssp HHHHHTTCBCS
T ss_pred HHHHccCCEeC
Confidence 99999987765
No 8
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.80 E-value=1.4e-19 Score=173.06 Aligned_cols=142 Identities=14% Similarity=0.189 Sum_probs=118.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhcc----C-------CcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRF----G-------PLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~f----G-------pLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~---- 632 (1158)
.++++||||||+.+++++||++.|++| | +|.++.+.++||||||+|.+.+||.+|+ .|+|..+.
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 468999999999999999999999999 7 8889999999999999999999999999 89998775
Q ss_pred EEEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHH
Q 001097 633 RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATT 708 (1158)
Q Consensus 633 RI~F~r~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~ 708 (1158)
+|++.... . ....++.||||+++..++.++|...|..+|.+..+.+. + ...++.++|+|++.++|..
T Consensus 81 ~v~~~~~~--~-------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 81 KIRRPHDY--Q-------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp EEECCSSC--C-------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHH
T ss_pred eecCCccc--C-------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 44443321 0 12347999999999999999999999987655554442 2 2336789999999999999
Q ss_pred HHHHHhhhccc
Q 001097 709 AMAHLRQHRKS 719 (1158)
Q Consensus 709 Am~~l~~~r~~ 719 (1158)
|++.|+++..+
T Consensus 152 A~~~l~g~~~~ 162 (172)
T 2g4b_A 152 AIAGLNGMQLG 162 (172)
T ss_dssp HHHHHTTCEET
T ss_pred HHHHcCCCEEC
Confidence 99999987654
No 9
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.80 E-value=3.5e-19 Score=175.54 Aligned_cols=149 Identities=16% Similarity=0.172 Sum_probs=121.0
Q ss_pred CceEEeccCCC-ccCHHHHHHHhhccCCcceEEEec-CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccC--
Q 001097 570 SKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL-- 641 (1158)
Q Consensus 570 S~~LWVGnL~~-~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~-- 641 (1158)
+++||||||+. ++++++|+++|++||.|.+|.+.+ .+|||||+|.+.++|..|++.|+|..+. +|++++...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 82 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 82 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcC
Confidence 68999999999 999999999999999999999987 4799999999999999999999998765 888886431
Q ss_pred ----CCC--ccc-------------cc-----ccccccceEEEccCCCcchhHHHHHhhhccc-ccCCceeecCCCCCee
Q 001097 642 ----GTK--GVI-------------NG-----VAVGSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVTDLSCEGAL 696 (1158)
Q Consensus 642 ----g~r--g~~-------------~G-----va~~~s~~LwVG~Iss~~~kEELfsE~~kag-~kgPv~f~dlseK~~L 696 (1158)
+.. +.. .+ ....+++.|||++++..++.|+|...|..+| ....+.+. -..++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~-~~~~g~a 161 (198)
T 1qm9_A 83 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF-QKDRKMA 161 (198)
T ss_dssp CSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEES-STTSSCE
T ss_pred CCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEE-eCCCcEE
Confidence 000 000 00 0013589999999999999999999999876 44444331 2368999
Q ss_pred eccccCHHHHHHHHHHHhhhccc
Q 001097 697 LMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 697 pVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+|||.+.++|..|++.|+++..+
T Consensus 162 fV~f~~~~~A~~A~~~l~g~~~~ 184 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNHDLG 184 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSSCCS
T ss_pred EEEeCCHHHHHHHHHHhcCCccC
Confidence 99999999999999999997754
No 10
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.80 E-value=3.8e-19 Score=181.54 Aligned_cols=151 Identities=15% Similarity=0.150 Sum_probs=121.9
Q ss_pred ccCceEEeccCCC-ccCHHHHHHHhhccCCcceEEEec-CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccC
Q 001097 568 SASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 641 (1158)
Q Consensus 568 ~~S~~LWVGnL~~-~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~ 641 (1158)
.++++||||||+. ++++++|+++|++||.|.+|.+.+ .||||||+|.+.++|..|++.|+|..+. +|++++...
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 111 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 111 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCcc
Confidence 5789999999999 999999999999999999999987 4799999999999999999999998775 888886431
Q ss_pred ------CCC--------------cc-ccc-----ccccccceEEEccCCCcchhHHHHHhhhccc-ccCCceeecCCCCC
Q 001097 642 ------GTK--------------GV-ING-----VAVGSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVTDLSCEG 694 (1158)
Q Consensus 642 ------g~r--------------g~-~~G-----va~~~s~~LwVG~Iss~~~kEELfsE~~kag-~kgPv~f~dlseK~ 694 (1158)
+.. .. -.+ ....+++.|||++++..+++++|...|..++ .+..+.+. -.+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~-~~~~g 190 (229)
T 2adc_A 112 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF-QKDRK 190 (229)
T ss_dssp CCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC-SSSTT
T ss_pred ccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE-ECCCc
Confidence 000 00 000 0123589999999999999999999999765 33333331 23789
Q ss_pred eeeccccCHHHHHHHHHHHhhhccc
Q 001097 695 ALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 695 ~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.++|||++.++|..|++.|+++..+
T Consensus 191 ~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 191 MALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred EEEEEECCHHHHHHHHHHHCCCccC
Confidence 9999999999999999999997754
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.80 E-value=1.9e-19 Score=175.72 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=119.7
Q ss_pred cCceEEeccCCCccCHHHHHHHhhcc----C-------CcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----E
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRF----G-------PLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----R 633 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~f----G-------pLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----R 633 (1158)
.+|+||||||+.+++|+||+++|++| | .|.++.+.+.||||||+|.+.+||.+|+ .|+|..+. +
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 58999999999999999999999999 6 7888888889999999999999999999 89998765 5
Q ss_pred EEEeeccCCCC-----------cccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee----cCCCCCeeec
Q 001097 634 VKFMDVGLGTK-----------GVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLM 698 (1158)
Q Consensus 634 I~F~r~~~g~r-----------g~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~----dlseK~~LpV 698 (1158)
|+++....... +.........++.||||+++..++.++|...|..++.+..+.+. ....++.++|
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV 161 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 161 (198)
T ss_dssp EECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEE
T ss_pred EeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEE
Confidence 55553321111 11122222468999999999999999999999987755544442 2233678999
Q ss_pred cccCHHHHHHHHHHHhhhccc
Q 001097 699 EFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 699 EF~t~edA~~Am~~l~~~r~~ 719 (1158)
+|++.++|..|++.|+++..+
T Consensus 162 ~f~~~~~a~~A~~~l~g~~~~ 182 (198)
T 2yh0_A 162 EYVDINVTDQAIAGLNGMQLG 182 (198)
T ss_dssp EESSSSHHHHHHHHHTTCEET
T ss_pred EECCHHHHHHHHHHcCCCEEC
Confidence 999999999999999997754
No 12
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.80 E-value=4.8e-19 Score=183.84 Aligned_cols=151 Identities=11% Similarity=0.199 Sum_probs=121.7
Q ss_pred cccCceEEeccCCCccCHHHHH----HHhhccCCcceEEEec---CCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001097 567 FSASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~----~~F~~fGpLe~V~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 635 (1158)
..++++||||||+.+++++||+ ++|++||.|.+|++.+ .||||||+|.+.++|..|++.|+|..+. +|+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 3679999999999999999977 8999999999999865 8899999999999999999999998765 788
Q ss_pred EeeccCCC----------------------------------------Cccccc--------------------------
Q 001097 636 FMDVGLGT----------------------------------------KGVING-------------------------- 649 (1158)
Q Consensus 636 F~r~~~g~----------------------------------------rg~~~G-------------------------- 649 (1158)
|++..... .+...|
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 87543210 000000
Q ss_pred ------------------------------------ccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCC-
Q 001097 650 ------------------------------------VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC- 692 (1158)
Q Consensus 650 ------------------------------------va~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlse- 692 (1158)
....+++.||||+++..+++|+|...|..++.+..+.+. .+
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~--~~~ 243 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV--PGR 243 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe--cCC
Confidence 011157889999999999999999999987655555443 33
Q ss_pred CCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 693 EGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 693 K~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
++.+||||.+.++|..|++.|+++..+
T Consensus 244 ~g~afV~f~~~~~A~~A~~~l~g~~~~ 270 (282)
T 3pgw_A 244 HDIAFVEFDNEVQAGAARDALQGFKIT 270 (282)
T ss_pred CcEEEEEeCCHHHHHHHHHHcCCcEeC
Confidence 489999999999999999999997654
No 13
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.79 E-value=4.6e-19 Score=184.51 Aligned_cols=137 Identities=15% Similarity=0.209 Sum_probs=119.6
Q ss_pred cccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001097 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1158)
Q Consensus 565 dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 640 (1158)
.-...+++||||||+.++|++||+.+|++||.|.+|++.+.||||||+|.+.++|..|++.|+|..+. +|+|+..
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~- 95 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH- 95 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-
Confidence 34567899999999999999999999999999999999999999999999999999999999998765 6776644
Q ss_pred CCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCCeeeccccCHHHHHHHHHHHhhh
Q 001097 641 LGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQH 716 (1158)
Q Consensus 641 ~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d--lseK~~LpVEF~t~edA~~Am~~l~~~ 716 (1158)
++.||||+++..++.++|...|..+|.+..+.+. + ...++.++|+|.+.++|..|++.|++.
T Consensus 96 --------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 160 (261)
T 3sde_A 96 --------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDG 160 (261)
T ss_dssp --------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred --------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 6789999999999999999999887755555442 2 334778999999999999999999653
No 14
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.79 E-value=4.1e-19 Score=184.58 Aligned_cols=197 Identities=13% Similarity=0.109 Sum_probs=145.4
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccCC
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLG 642 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~g 642 (1158)
+..+++||||||+.+++++||+++|++|| |.++.+-..+|||||+|.+.+||..|++.|+|..+. +|++..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 45789999999999999999999999999 999999889999999999999999999999998765 555533
Q ss_pred CCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhcc
Q 001097 643 TKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 643 ~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
..+.||||+++..++.++|...|..+|.+..+.+. + ...++.++|+|.+.++|..|++.|+++..
T Consensus 94 -----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~ 162 (284)
T 3smz_A 94 -----------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL 162 (284)
T ss_dssp -----------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred -----------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 36799999999999999999999987765555442 2 33467899999999999999999999765
Q ss_pred ccCCCC-CCCCCCCCccccccCCCCCCCCcceEe-eecc-----cccccccccCCCCcccccccCCCCCCCCCCCc
Q 001097 719 SRSNYL-PPNTGPANAAMSQIDGARSVPAAPIHV-DIRS-----NRLGNISAGGFGSPHTAPFHSSQPGFHHATSF 787 (1158)
Q Consensus 719 ~rs~~~-~~~~~~~~~~~~~~d~~~~~Ps~~l~i-~~p~-----~~l~NlA~~~fGei~rf~idfS~p~~~~~~~F 787 (1158)
+..... .... .........+..+|+| ++|. +.|.. .+..||.|....|.....+...++.|
T Consensus 163 ~g~~i~v~~a~-------~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~-~f~~~G~i~~v~i~~~~~g~~~g~af 230 (284)
T 3smz_A 163 GPRTLYVHWTD-------AGQLTPALLHSRCLCVDRLPPGFNDVDALCR-ALSAVHSPTFCQLACGQDGQLKGFAV 230 (284)
T ss_dssp TTEECEEEECC-------GGGCCTTTTSCSEEEEECCCTTCCCHHHHHH-HTCSSSCCSEEEEEECSSCCEEEEEE
T ss_pred CCcEEEEEECC-------CCCCCcccCCccEEEEecCCcccCCHHHHHH-HhhCCCCeEEEEEEECCCCCcccEEE
Confidence 511100 0000 0001112345666665 4552 33445 67789999988874433333333333
No 15
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=4.5e-19 Score=172.87 Aligned_cols=141 Identities=15% Similarity=0.195 Sum_probs=110.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
..+++||||||+.+++++||+++|++||+|.+|.+.+ .||||||+|.+.+||..|++. +|..+. +|+++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4689999999999999999999999999999999864 478999999999999999987 665543 66666
Q ss_pred eccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHH
Q 001097 638 DVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAH 712 (1158)
Q Consensus 638 r~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~ 712 (1158)
....... .......++.||||+++..++.|+|...|..+|.+..+.+. + ...++.++|+|++.++|..|++.
T Consensus 90 ~~~~~~~---~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 90 VSREDSQ---RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp CC--------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred cCccccc---ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 4321110 01112357899999999999999999999987765555443 2 33467899999999999999975
No 16
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.78 E-value=8.7e-19 Score=168.82 Aligned_cols=141 Identities=14% Similarity=0.179 Sum_probs=115.0
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcce-----EEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH-----FFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~-----V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
..+++||||||+.+++++||++.|..||.+.. ...-..||||||+|.+.+||.+|++ |+|..+. +|+++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCC
Confidence 35799999999999999999999999997655 3334589999999999999999995 9998775 555554
Q ss_pred ccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee--cCCCCCeeeccccCHHHHHHHHHHHhhh
Q 001097 639 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT--DLSCEGALLMEFRTPEEATTAMAHLRQH 716 (1158)
Q Consensus 639 ~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~--dlseK~~LpVEF~t~edA~~Am~~l~~~ 716 (1158)
..-. .....++.||||+++..++.++|...|..++ .+.+. ....++.++|||.+.++|..|++.|+++
T Consensus 90 ~~~~-------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g---~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 1fje_B 90 GRDS-------KKVRAARTLLAKNLSFNITEDELKEVFEDAL---EIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGA 159 (175)
T ss_dssp CSSC-------STTGGGGEEEEESCCSSCCHHHHHHHCTTCS---EEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEE
T ss_pred Cccc-------cccccCCEEEEeCCCCCCCHHHHHHHHHhcC---eEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 3211 1234789999999999999999999998754 44332 3567899999999999999999999987
Q ss_pred ccc
Q 001097 717 RKS 719 (1158)
Q Consensus 717 r~~ 719 (1158)
..+
T Consensus 160 ~~~ 162 (175)
T 1fje_B 160 EID 162 (175)
T ss_dssp EET
T ss_pred EEC
Confidence 654
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.78 E-value=2.2e-19 Score=170.87 Aligned_cols=140 Identities=10% Similarity=0.096 Sum_probs=112.0
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHh---hcCCceeEEEEee
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREY---IRNHFSWRVKFMD 638 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~---L~G~~~~RI~F~r 638 (1158)
.++++||||||+.+++++||++.|++||+|.+|++.+ .||||||+|.+.++|..|++. |+|+.+ ++.++.
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i-~v~~~~ 79 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVI-DPKRAI 79 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEEC-CCEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEc-cccccc
Confidence 3689999999999999999999999999999999864 469999999999999999997 555332 344432
Q ss_pred ccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHh
Q 001097 639 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLR 714 (1158)
Q Consensus 639 ~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~ 714 (1158)
+. .....++.||||+++..+++++|...|..+|.+..+.+. + ...++.++|+|.+.++|..|++ |+
T Consensus 80 ~~---------~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~ 149 (167)
T 2cjk_A 80 PR---------DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NK 149 (167)
T ss_dssp CH---------HHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CS
T ss_pred ch---------hhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CC
Confidence 21 012357899999999999999999999987765555442 2 3456799999999999999997 66
Q ss_pred hhcc
Q 001097 715 QHRK 718 (1158)
Q Consensus 715 ~~r~ 718 (1158)
++..
T Consensus 150 ~~~~ 153 (167)
T 2cjk_A 150 FIDF 153 (167)
T ss_dssp EECS
T ss_pred CEEe
Confidence 5543
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.74 E-value=6.7e-18 Score=176.15 Aligned_cols=190 Identities=12% Similarity=0.137 Sum_probs=135.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----CCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeeccC
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGL 641 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~----~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~~ 641 (1158)
..+++||||||+.+++++||+++|++||+|.+|++.+ .+|||||+|.+.+||..|++ |+|..+. .|+....
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~-- 115 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL-- 115 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC--
Confidence 4689999999999999999999999999999999976 68999999999999999995 9998765 3332221
Q ss_pred CCCcccccccccccceEEEccCCCcchhHHHHHhhhccc-ccCCceee---cCCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVT---DLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 642 g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag-~kgPv~f~---dlseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
.++.||||+++..++.++|...|..+| .+..+.+. ....++.++|+|.+.++|..|++.|+++.
T Consensus 116 ------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 183 (292)
T 2ghp_A 116 ------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLK 183 (292)
T ss_dssp ------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCE
T ss_pred ------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 478999999999999999999999877 55555442 13467899999999999999999999977
Q ss_pred cccCCCC-CCCCCCCCccccccCCCCCCCCcceEee-ecc-----cccccccccCCCCcccccccC
Q 001097 718 KSRSNYL-PPNTGPANAAMSQIDGARSVPAAPIHVD-IRS-----NRLGNISAGGFGSPHTAPFHS 776 (1158)
Q Consensus 718 ~~rs~~~-~~~~~~~~~~~~~~d~~~~~Ps~~l~i~-~p~-----~~l~NlA~~~fGei~rf~idf 776 (1158)
....... ........ ....+ ....+..+|+|+ +|. +.|.. .+..||+|..++|-.
T Consensus 184 ~~g~~l~v~~a~~~~~--~~~~~-~~~~~~~~l~v~nlp~~~~t~~~l~~-~F~~~G~v~~v~i~~ 245 (292)
T 2ghp_A 184 IEGYTLVTKVSNPLEK--SKRTD-SATLEGREIMIRNLSTELLDENLLRE-SFEGFGSIEKINIPA 245 (292)
T ss_dssp ETTEECEEEECCCC------------CCTTTEEEEEEECTTTCCHHHHHH-HHGGGSCEEEEECCS
T ss_pred eCCcEEEEEECCCCcc--ccccc-ccCCCCceEEEECCCcccCCHHHHHH-HHhccCCeeEEEEEe
Confidence 6511100 00000000 00000 123556677664 552 34445 667899999988844
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.74 E-value=1.6e-17 Score=172.72 Aligned_cols=157 Identities=19% Similarity=0.232 Sum_probs=128.7
Q ss_pred ecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCc
Q 001097 557 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF 630 (1158)
Q Consensus 557 ~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~ 630 (1158)
++|-+.-.......++||||||+.+++++||+++|+.||.|.++.+.. .+|||||+|.+.++|.+|++.|+|..
T Consensus 82 ~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~ 161 (284)
T 3smz_A 82 LRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKP 161 (284)
T ss_dssp ETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred eCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 445555555567789999999999999999999999999999998764 47899999999999999999999987
Q ss_pred ee----EEEEeeccCCCCcccccccccccceEEEccCCCcc-hhHHHHHhhhcccccCCceee-c--CCCCCeeeccccC
Q 001097 631 SW----RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQW-AKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRT 702 (1158)
Q Consensus 631 ~~----RI~F~r~~~g~rg~~~Gva~~~s~~LwVG~Iss~~-~kEELfsE~~kag~kgPv~f~-d--lseK~~LpVEF~t 702 (1158)
+. +|+++++.-.. .....++.|||++++..+ +.|+|...|..+|.+..+.+. + ...++.++|+|.+
T Consensus 162 ~~g~~i~v~~a~~~~~~------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 235 (284)
T 3smz_A 162 LGPRTLYVHWTDAGQLT------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYET 235 (284)
T ss_dssp ETTEECEEEECCGGGCC------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSS
T ss_pred eCCcEEEEEECCCCCCC------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCC
Confidence 65 78888663111 112368899999999996 889999999987766555442 2 4457899999999
Q ss_pred HHHHHHHHHHHhhhccc
Q 001097 703 PEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 703 ~edA~~Am~~l~~~r~~ 719 (1158)
.++|..|++.|+++..+
T Consensus 236 ~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 236 AEMAEEAQQQADGLSLG 252 (284)
T ss_dssp HHHHHHHHHHHTTCEET
T ss_pred HHHHHHHHHHhCCCccC
Confidence 99999999999998765
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.71 E-value=2.3e-17 Score=172.03 Aligned_cols=148 Identities=13% Similarity=0.091 Sum_probs=119.5
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccC-CcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fG-pLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
.+++||||||+.++++++|+++|++|| .|.+|.+.+ .+|||||+|.+.++|..|++.|+|..+. +|++++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 689999999999999999999999999 999999864 6899999999999999999999998775 788876
Q ss_pred ccCCCCcccccccccccceEEEccCCCc-chhHHHHHhhhcccccCCceee-c----CCCCCeeeccccCHHHHHHHHHH
Q 001097 639 VGLGTKGVINGVAVGSCFHVYVGNIPNQ-WAKDEILHESYKVVYKGPYMVT-D----LSCEGALLMEFRTPEEATTAMAH 712 (1158)
Q Consensus 639 ~~~g~rg~~~Gva~~~s~~LwVG~Iss~-~~kEELfsE~~kag~kgPv~f~-d----lseK~~LpVEF~t~edA~~Am~~ 712 (1158)
+....... ......++.|||++++.. ++.++|...|..+|.+..+.+. + ...++.++|+|.+.++|..|+ .
T Consensus 196 ~~~~~~~~--~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~ 272 (292)
T 2ghp_A 196 PLEKSKRT--DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q 272 (292)
T ss_dssp CC-----------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G
T ss_pred CCcccccc--cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H
Confidence 63221100 012346899999999999 9999999999987655555442 2 345678999999999999999 9
Q ss_pred Hhhhccc
Q 001097 713 LRQHRKS 719 (1158)
Q Consensus 713 l~~~r~~ 719 (1158)
|+++..+
T Consensus 273 l~g~~~~ 279 (292)
T 2ghp_A 273 MNRSLLG 279 (292)
T ss_dssp GTTEEET
T ss_pred hcCCEEC
Confidence 9997754
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.62 E-value=5.3e-16 Score=144.21 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=64.4
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec----CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccC
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 641 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~ 641 (1158)
+.+||||||+.+++|+||+++|++||+|.+|.+.+ .||||||+|.+.+||.+|++.|+|..+. +|+++.+.-
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 56899999999999999999999999999999865 4899999999999999999999999775 777775431
Q ss_pred CCCcccccccccccceEEEccCCCcchhH
Q 001097 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKD 670 (1158)
Q Consensus 642 g~rg~~~Gva~~~s~~LwVG~Iss~~~kE 670 (1158)
.+..-.+........|||++++..+++|
T Consensus 85 -~~~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 85 -EREAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp -C---------------------------
T ss_pred -ccccccccccCCCCceEeCCCCCCcccc
Confidence 1111122223456789999999988776
No 22
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=9.4e-15 Score=131.24 Aligned_cols=77 Identities=22% Similarity=0.361 Sum_probs=71.0
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 563 a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
.-....++++||||||+.+++++||+++|++||+|++|++.+.||||||+|.+.++|.+|++.|+|..+. +|+|++
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 8 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 3345678999999999999999999999999999999999999999999999999999999999998765 888886
Q ss_pred c
Q 001097 639 V 639 (1158)
Q Consensus 639 ~ 639 (1158)
+
T Consensus 88 ~ 88 (99)
T 2cpj_A 88 H 88 (99)
T ss_dssp C
T ss_pred C
Confidence 6
No 23
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=131.07 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=76.0
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEecC-CceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccCCCCc
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLGTKG 645 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~-rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~g~rg 645 (1158)
++||||||+.+++++||+++|++||+|.+|.+... +|||||+|.+.++|..|++.|+|..+. +|++++.....+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 57999999999999999999999999999999885 999999999999999999999998765 8999865421111
Q ss_pred ccccccc---cccceEEEccCC
Q 001097 646 VINGVAV---GSCFHVYVGNIP 664 (1158)
Q Consensus 646 ~~~Gva~---~~s~~LwVG~Is 664 (1158)
.|-.. ..+..||||++.
T Consensus 81 --~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 81 --FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp --CCSCCCSCCCCSCCCSCCCC
T ss_pred --CCCCCccccCCCceecCCCC
Confidence 11111 247889999985
No 24
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=135.46 Aligned_cols=77 Identities=22% Similarity=0.275 Sum_probs=68.1
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCce------eEEEE
Q 001097 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS------WRVKF 636 (1158)
Q Consensus 563 a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~------~RI~F 636 (1158)
.+....+++.||||||+.++||+||+++|++||.|.+|.+.+.||||||+|++.++|.+|++.|+|..+ .+|.|
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 456678999999999999999999999999999999999999999999999999999999999998753 27777
Q ss_pred eec
Q 001097 637 MDV 639 (1158)
Q Consensus 637 ~r~ 639 (1158)
+.+
T Consensus 94 S~~ 96 (100)
T 3r27_A 94 STS 96 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 654
No 25
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.9e-14 Score=133.71 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=69.7
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCc--e----eEEEE
Q 001097 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF--S----WRVKF 636 (1158)
Q Consensus 563 a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~--~----~RI~F 636 (1158)
.+.-..+++.||||||+.+++|+||+++|++||.|.+|++.+.||||||+|++.+||.+|++.|+|+. + .+|+|
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp SCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999998764 2 28888
Q ss_pred eecc
Q 001097 637 MDVG 640 (1158)
Q Consensus 637 ~r~~ 640 (1158)
++..
T Consensus 88 a~~~ 91 (104)
T 1wex_A 88 STSK 91 (104)
T ss_dssp CSSS
T ss_pred ccCc
Confidence 8653
No 26
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.7e-14 Score=130.68 Aligned_cols=76 Identities=16% Similarity=0.118 Sum_probs=67.3
Q ss_pred ccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCC--ce----eEEEEe
Q 001097 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNH--FS----WRVKFM 637 (1158)
Q Consensus 564 ~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~--~~----~RI~F~ 637 (1158)
..-..++++||||||+.+++|+||+++|++||.|.+|++.+.||||||+|.+.++|..|++.|+|. .+ .+|.|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 344568999999999999999999999999999999999999999999999999999999998653 23 278888
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
+.
T Consensus 89 ~~ 90 (101)
T 2cq1_A 89 NH 90 (101)
T ss_dssp SC
T ss_pred Cc
Confidence 65
No 27
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.6e-14 Score=136.49 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=61.1
Q ss_pred ccCceEEe--ccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCce
Q 001097 568 SASKQLWL--GSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS 631 (1158)
Q Consensus 568 ~~S~~LWV--GnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~ 631 (1158)
.++++||| |||+.+++|++|+++|++||.|++|++.++||||||+|.+.+||.+|++.|+|+.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 46899999 88999999999999999999999999988999999999999999999999999865
No 28
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=2.4e-14 Score=133.50 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=65.7
Q ss_pred cCceEEeccCCC-ccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCc--ee----EEEEeec
Q 001097 569 ASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF--SW----RVKFMDV 639 (1158)
Q Consensus 569 ~S~~LWVGnL~~-~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~--~~----RI~F~r~ 639 (1158)
++++||||||+. +++|+||+++|++||.|.+|++.+.||||||+|.+.+||.+|++.|+|.. +. +|.|++.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 789999999999 99999999999999999999999999999999999999999999999864 32 7888864
No 29
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=7.7e-14 Score=121.29 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=64.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhh-cCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYI-RNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L-~G~~~~----RI~F~ 637 (1158)
..+++||||||+.+++++||++.|++||+|.++.+.++||||||+|.+.++|..|++.| +|..+. +|+|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 56799999999999999999999999999999999999999999999999999999999 887654 66665
No 30
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.2e-13 Score=123.73 Aligned_cols=73 Identities=27% Similarity=0.443 Sum_probs=67.5
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee------EEEEeec
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMDV 639 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~------RI~F~r~ 639 (1158)
-.++++||||||+.+++++||+++|++||+|++|.+.+.||||||+|.+.+||.+|++.|+|..+. +|+|+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 457899999999999999999999999999999999999999999999999999999999987543 7888866
No 31
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=5.2e-14 Score=132.60 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=64.4
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCC--cee----EEEEeec
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNH--FSW----RVKFMDV 639 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~--~~~----RI~F~r~ 639 (1158)
.++++||||||+.+++|+||+++|++||.|.+|++.++||||||+|.+.+||.+|++.|+|. .+. +|+|++.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 46899999999999999999999999999999999999999999999999999999999863 332 6666654
No 32
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=9.9e-14 Score=133.03 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=66.3
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCC--ce----eEEEEeec
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNH--FS----WRVKFMDV 639 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~--~~----~RI~F~r~ 639 (1158)
..++++||||||+.+++|+||+++|++||.|.+|++.+.||||||+|++.++|.+|++.|+|. .+ .+|+|++.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 457899999999999999999999999999999999999999999999999999999998853 23 38888865
No 33
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.4e-13 Score=122.19 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=70.2
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001097 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1158)
Q Consensus 563 a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~---- 632 (1158)
+.+....+++||||||+.+++++||+++|++||+|++|.+.. .+|||||+|.+.+||.+|++.|+|..+.
T Consensus 5 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 5 SSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 445566889999999999999999999999999999999965 4789999999999999999999998765
Q ss_pred EEEEeecc
Q 001097 633 RVKFMDVG 640 (1158)
Q Consensus 633 RI~F~r~~ 640 (1158)
+|+|+++.
T Consensus 85 ~v~~a~~~ 92 (102)
T 1x5s_A 85 RVDQAGKS 92 (102)
T ss_dssp EEEEEECC
T ss_pred EEEECCCC
Confidence 89999764
No 34
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2e-13 Score=123.12 Aligned_cols=76 Identities=16% Similarity=0.256 Sum_probs=68.4
Q ss_pred cccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----CCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001097 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1158)
Q Consensus 565 dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 636 (1158)
.--..+++||||||+.+++++||+++|++||+|.+|.+.+ .||||||+|.+.++|..|++.|+|..+. +|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3446789999999999999999999999999999999876 6899999999999999999999998765 8888
Q ss_pred eecc
Q 001097 637 MDVG 640 (1158)
Q Consensus 637 ~r~~ 640 (1158)
++..
T Consensus 90 a~~~ 93 (103)
T 2cqi_A 90 ATTP 93 (103)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 8764
No 35
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=6.7e-14 Score=132.95 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=66.2
Q ss_pred cccCceEEeccCCCc-cCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCc--e----eEEEEeec
Q 001097 567 FSASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF--S----WRVKFMDV 639 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~-vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~--~----~RI~F~r~ 639 (1158)
..++++||||||+.+ ++|+||+++|++||.|.+|++.+.||||||+|.+.+||.+|++.|+|.. + .+|.|++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 457999999999998 9999999999999999999999999999999999999999999997643 3 28888864
No 36
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=8.8e-14 Score=125.06 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=64.4
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
.+++||||||+.+++++||+++|++||.|.++.+.+.||||||+|.+.+||..|++.|+|..+. +|+|++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 4789999999999999999999999999999999999999999999999999999999998764 555554
No 37
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.45 E-value=1.5e-13 Score=122.83 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=65.3
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
++++||||||+.+++++||++.|++||+|.++.+... +|||||+|.+.++|.+|++.|+|..+. +|+|++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5899999999999999999999999999999998653 899999999999999999999998765 788886
Q ss_pred c
Q 001097 639 V 639 (1158)
Q Consensus 639 ~ 639 (1158)
+
T Consensus 81 ~ 81 (96)
T 2x1f_A 81 N 81 (96)
T ss_dssp C
T ss_pred C
Confidence 5
No 38
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.44 E-value=1.6e-13 Score=118.43 Aligned_cols=70 Identities=14% Similarity=0.229 Sum_probs=64.1
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEecC------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
|.+||||||+.+++++||++.|++||+|.++.+.+. +|||||+|.+.+||.+|++.|+|..+. +|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 578999999999999999999999999999998754 899999999999999999999998765 7777765
No 39
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.1e-13 Score=119.70 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=66.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
+++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4689999999999999999999999999999999965 3789999999999999999999998765 89998
Q ss_pred ecc
Q 001097 638 DVG 640 (1158)
Q Consensus 638 r~~ 640 (1158)
+..
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 764
No 40
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.44 E-value=1.7e-13 Score=118.88 Aligned_cols=70 Identities=21% Similarity=0.349 Sum_probs=64.0
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
.++++||||||+.+++++||++.|++||+|.++.+.. .+|||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5789999999999999999999999999999999853 5899999999999999999999998765 67665
No 41
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=124.78 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=65.7
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001097 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1158)
Q Consensus 566 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 635 (1158)
+.-.+.+||||||+.++||+||+++|++||+|.+|.+.+ .||||||+|.+.+||.+|++.|+|..+. +|+
T Consensus 15 ~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 15 LYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp -CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344467899999999999999999999999999999854 5789999999999999999999999765 888
Q ss_pred Eeec
Q 001097 636 FMDV 639 (1158)
Q Consensus 636 F~r~ 639 (1158)
|++|
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 8876
No 42
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.44 E-value=9.9e-14 Score=128.13 Aligned_cols=68 Identities=22% Similarity=0.225 Sum_probs=64.4
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
|..||||||...+||++|+++|.+||+|.+|.+..+||||||+|.+.+||..|++.|+|..+. ||+|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 778999999999999999999999999999999999999999999999999999999998775 77766
No 43
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=118.91 Aligned_cols=72 Identities=21% Similarity=0.349 Sum_probs=63.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
.++++||||||+.+++++||++.|++||.|.++.+... +|||||+|.+.+||..|++.|+|..+. +|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999999998653 799999999999999999999998765 78877
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
++
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 44
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.6e-13 Score=123.32 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=68.3
Q ss_pred cccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EE
Q 001097 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 634 (1158)
Q Consensus 565 dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI 634 (1158)
+...++++||||||+.+++++||+++|++||+|++|.+.. .+|||||+|.+.+||.+|++.|+|..+. +|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4456899999999999999999999999999999999854 5899999999999999999999998765 78
Q ss_pred EEeecc
Q 001097 635 KFMDVG 640 (1158)
Q Consensus 635 ~F~r~~ 640 (1158)
+|+++.
T Consensus 87 ~~a~~~ 92 (102)
T 2cqb_A 87 NLAKPM 92 (102)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 888663
No 45
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.7e-13 Score=125.32 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=68.0
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 640 (1158)
...++||||||+.+++++||+.+|++||.|.+|.+.+.||||||+|.+.++|..|++.|+|..+. +|+|+++.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 45789999999999999999999999999999999999999999999999999999999998765 78888764
No 46
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=121.51 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=65.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC-----CceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~-----rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
.++++||||||+.+++++||+++|++||+|++|.+... ||||||+|.+.+||.+|++.|+|..+. +|+|++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 46799999999999999999999999999999999764 799999999999999999999998765 777765
Q ss_pred c
Q 001097 639 V 639 (1158)
Q Consensus 639 ~ 639 (1158)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 47
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.8e-13 Score=120.96 Aligned_cols=74 Identities=22% Similarity=0.177 Sum_probs=66.0
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001097 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1158)
Q Consensus 566 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 635 (1158)
--.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|..|++.|+|..+. +|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 346789999999999999999999999999999999863 5789999999999999999999998765 677
Q ss_pred Eeec
Q 001097 636 FMDV 639 (1158)
Q Consensus 636 F~r~ 639 (1158)
|+++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 7655
No 48
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.7e-13 Score=120.35 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=66.4
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceE-EEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHF-FFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V-~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 636 (1158)
+++++||||||+.+++++||+++|++||+|.++ ++.. .+|||||+|.+.+||..|++.|+|..+. +|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 468999999999999999999999999999999 8765 4899999999999999999999998765 8888
Q ss_pred eecc
Q 001097 637 MDVG 640 (1158)
Q Consensus 637 ~r~~ 640 (1158)
+++.
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 8653
No 49
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.2e-13 Score=119.37 Aligned_cols=71 Identities=20% Similarity=0.238 Sum_probs=65.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 640 (1158)
.++++||||||+.+++++||+++|++||+|++|.+. ||||||+|.+.++|.+|++.|+|..+. +|+++++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 468999999999999999999999999999999997 899999999999999999999998765 88888654
No 50
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.43 E-value=2e-13 Score=127.23 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=65.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
.++++||||||+.+++|++|+++|++||+|.+|.+.. .||||||+|.+.+||.+|++.|+|+.+. +|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4689999999999999999999999999999999853 5799999999999999999999999765 77777
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
+.
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 51
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.43 E-value=3e-13 Score=121.36 Aligned_cols=75 Identities=12% Similarity=0.230 Sum_probs=65.6
Q ss_pred ccccccCceEEeccCCC-ccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 564 MDIFSASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 564 ~dv~~~S~~LWVGnL~~-~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
++-..++++||||||+. +++++||++.|++||+|.+|.+ .||||||+|.+.++|..|++.|+|..+. +|+|++
T Consensus 4 ~~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 4 MHNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE--ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred cccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 45567899999999998 9999999999999999999998 4899999999999999999999998775 899986
Q ss_pred cc
Q 001097 639 VG 640 (1158)
Q Consensus 639 ~~ 640 (1158)
..
T Consensus 82 ~~ 83 (96)
T 2kvi_A 82 SN 83 (96)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 52
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=3.4e-13 Score=121.86 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=67.4
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC-------CceEEEEecCHHHHHHHHHhh-cCCcee----EE
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-------KGFALVEYINIIDAIRAREYI-RNHFSW----RV 634 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~-------rgfAFVeF~~i~DAv~A~~~L-~G~~~~----RI 634 (1158)
-..+++||||||+.+++++||+++|++||+|.+|.+... +|||||+|.+.+||.+|++.| +|..+. +|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 357899999999999999999999999999999999765 899999999999999999999 888764 89
Q ss_pred EEeecc
Q 001097 635 KFMDVG 640 (1158)
Q Consensus 635 ~F~r~~ 640 (1158)
+|+++.
T Consensus 92 ~~a~~~ 97 (107)
T 2cph_A 92 EWADSE 97 (107)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 988764
No 53
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=2.4e-13 Score=126.10 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=66.6
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
.+++||||||+.+++++||+++|++||+|.+|.+.+.||||||+|.+.+||..|++.|+|..+. +|+|++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 4689999999999999999999999999999999999999999999999999999999998765 8888865
No 54
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=3e-13 Score=120.68 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=66.0
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec---------CCceEEEEecCHHHHHHHHHhhcCCcee----EE
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 634 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~---------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI 634 (1158)
.++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.++|.+|++.|+|..+. +|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4689999999999999999999999999999999863 4689999999999999999999998765 78
Q ss_pred EEeecc
Q 001097 635 KFMDVG 640 (1158)
Q Consensus 635 ~F~r~~ 640 (1158)
++++..
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 888664
No 55
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=4.8e-13 Score=118.67 Aligned_cols=71 Identities=23% Similarity=0.351 Sum_probs=65.1
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 640 (1158)
..+++||||||+.+++++||+++|++||+|.++.+. ++||||+|.+.+||.+|++.|+|..+. +|+|+++.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 468999999999999999999999999999999987 569999999999999999999998765 88888664
No 56
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.7e-13 Score=120.17 Aligned_cols=74 Identities=24% Similarity=0.273 Sum_probs=67.4
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC----CceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI----KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~----rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
-..+++||||||+.+++++||+++|++||+|++|.+... +|||||+|.+.+||..|++.|+|..+. +|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 356899999999999999999999999999999999764 899999999999999999999998765 888886
Q ss_pred cc
Q 001097 639 VG 640 (1158)
Q Consensus 639 ~~ 640 (1158)
+.
T Consensus 92 ~~ 93 (103)
T 2cq3_A 92 AR 93 (103)
T ss_dssp SS
T ss_pred cC
Confidence 63
No 57
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=5.2e-13 Score=121.81 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=66.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec---CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 640 (1158)
.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.+||..|++.|+|..+. +|+|++..
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 4679999999999999999999999999999999865 5789999999999999999999998765 88888764
No 58
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=4.9e-13 Score=118.16 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=65.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 640 (1158)
..+++||||||+.+++++||+.+|++||+|.++.+. ++||||+|.+.++|..|++.|+|..+. +|+|+++.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 468999999999999999999999999999999987 569999999999999999999998765 88888764
No 59
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.41 E-value=4.5e-13 Score=121.32 Aligned_cols=72 Identities=11% Similarity=0.186 Sum_probs=65.0
Q ss_pred ccccCceEEeccCCC-ccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 566 IFSASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 566 v~~~S~~LWVGnL~~-~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
-..++++||||||+. +++++||+++|++||.|.++.+ .||||||+|.+.++|.+|++.|+|..+. +|+|++.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 345789999999998 9999999999999999999998 4899999999999999999999998764 7777754
No 60
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=4.5e-13 Score=118.47 Aligned_cols=71 Identities=10% Similarity=0.216 Sum_probs=64.0
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 636 (1158)
-.++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.+||..|++.|+|..+. +|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45789999999999999999999999999999999964 4789999999999999999999998765 6666
Q ss_pred e
Q 001097 637 M 637 (1158)
Q Consensus 637 ~ 637 (1158)
+
T Consensus 93 a 93 (94)
T 2e5h_A 93 A 93 (94)
T ss_dssp C
T ss_pred c
Confidence 5
No 61
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.41 E-value=4.2e-13 Score=121.14 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=65.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC-----CceEEEEecCHHHHHHHHHhhcCCce-------eEEE
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFS-------WRVK 635 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~-----rgfAFVeF~~i~DAv~A~~~L~G~~~-------~RI~ 635 (1158)
.++++||||||+.+++++||+++|++||+|.+|.+... ||||||+|.+.+||.+|++.|+|..+ .+|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 46899999999999999999999999999999999865 89999999999999999999999753 3788
Q ss_pred Eeec
Q 001097 636 FMDV 639 (1158)
Q Consensus 636 F~r~ 639 (1158)
|++.
T Consensus 93 ~a~~ 96 (105)
T 2dnh_A 93 FADT 96 (105)
T ss_dssp ESCS
T ss_pred ECcc
Confidence 8865
No 62
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.4e-13 Score=121.19 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=66.6
Q ss_pred cccCceEEeccCCCccCHHHHH----HHhhccCCcceEEEecC---CceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001097 567 FSASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFFPI---KGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~----~~F~~fGpLe~V~~~~~---rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 635 (1158)
+...++||||||+.+++++||+ ++|++||+|.+|.+... ||||||+|.+.+||.+|++.|+|..+. +|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567899999999999999999 99999999999999754 899999999999999999999998765 788
Q ss_pred Eeec
Q 001097 636 FMDV 639 (1158)
Q Consensus 636 F~r~ 639 (1158)
++++
T Consensus 86 ~a~~ 89 (96)
T 2dgx_A 86 LATG 89 (96)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 8765
No 63
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.41 E-value=3.8e-13 Score=127.34 Aligned_cols=73 Identities=18% Similarity=0.313 Sum_probs=66.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
..+++||||||+.+++|+||+++|++||+|++|.+.. .||||||+|.+.+||.+|++.|+|..+. +|+|+
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4579999999999999999999999999999999864 3899999999999999999999998765 88888
Q ss_pred ecc
Q 001097 638 DVG 640 (1158)
Q Consensus 638 r~~ 640 (1158)
+..
T Consensus 120 ~~~ 122 (139)
T 1u6f_A 120 ASG 122 (139)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 64
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.41 E-value=4.1e-13 Score=116.87 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=64.6
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
.+++||||||+.+++++||+++|++||+|.++.+.. .+|||||+|.+.++|.+|++.|+|..+. +|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999843 6899999999999999999999998775 77777
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
++
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 65
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=3.6e-13 Score=121.49 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=67.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
..+++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.++|.+|++.|+|..+. +|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 3689999999999999999999999999999999984 5999999999999999999999999765 8888865
Q ss_pred c
Q 001097 640 G 640 (1158)
Q Consensus 640 ~ 640 (1158)
.
T Consensus 93 ~ 93 (103)
T 2d9p_A 93 K 93 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 66
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.40 E-value=5.6e-13 Score=122.44 Aligned_cols=96 Identities=15% Similarity=0.224 Sum_probs=79.5
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec---CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccC
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 641 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~ 641 (1158)
+++.||||||+.+++++||+.+|++||+|.+|.+.. .+|||||+|.+.+||.+|++.|+|..+. +|+|+++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~- 85 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN- 85 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC-
Confidence 579999999999999999999999999999999854 6899999999999999999999998775 88888651
Q ss_pred CCCcccccccccccceEEEccCCCcchhHHHHHhhhcccc
Q 001097 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVY 681 (1158)
Q Consensus 642 g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~ 681 (1158)
+ .. +++.....+++|...+.+++.
T Consensus 86 --~----------~~----~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 86 --R----------AF----QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp --H----------HT----TTSCHHHHHHHHHHHHHHHCC
T ss_pred --h----------hh----hhhhHhHhHHHHHHHHHHhCC
Confidence 0 01 456666777777766665543
No 67
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.40 E-value=4.6e-13 Score=121.06 Aligned_cols=73 Identities=19% Similarity=0.337 Sum_probs=66.1
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCce---e----EE
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS---W----RV 634 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~---~----RI 634 (1158)
..+++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|.+|++.|+|..+ . +|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 4578999999999999999999999999999999865 579999999999999999999999875 3 88
Q ss_pred EEeecc
Q 001097 635 KFMDVG 640 (1158)
Q Consensus 635 ~F~r~~ 640 (1158)
+|++..
T Consensus 91 ~~a~~~ 96 (106)
T 2dgp_A 91 KPADSE 96 (106)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 888763
No 68
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.40 E-value=3.5e-13 Score=119.89 Aligned_cols=84 Identities=15% Similarity=0.097 Sum_probs=72.0
Q ss_pred ecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe-cCCceEEEEecCHHHHHHHHHhhcCCcee---
Q 001097 557 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-PIKGFALVEYINIIDAIRAREYIRNHFSW--- 632 (1158)
Q Consensus 557 ~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~-~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--- 632 (1158)
++.+|..+.--.++++||||||+.+++++||+++|++||.|..+... ..||||||+|.+.+||..|++.|+|..+.
T Consensus 3 ~~~~p~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 3 MLEDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp CSSCTTTTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred cccCccccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34466666777789999999999999999999999999999988322 37999999999999999999999998664
Q ss_pred -EEEEeecc
Q 001097 633 -RVKFMDVG 640 (1158)
Q Consensus 633 -RI~F~r~~ 640 (1158)
+|+|+++.
T Consensus 83 l~v~~a~~~ 91 (96)
T 1fjc_A 83 VSLYYTGEK 91 (96)
T ss_dssp EEEEECSSS
T ss_pred EEEEEcCCC
Confidence 78888664
No 69
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=5.5e-13 Score=119.20 Aligned_cols=72 Identities=17% Similarity=0.362 Sum_probs=64.1
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcc-eEEEecC------CceEEEEecCHHHHHHHHHhhcCCce--------e
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLE-HFFFFPI------KGFALVEYINIIDAIRAREYIRNHFS--------W 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe-~V~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~--------~ 632 (1158)
.++++||||||+.+++++||+++|++||+|. ++.+.+. +|||||+|.+.+||.+|++.|+|..+ .
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4789999999999999999999999999999 9998654 49999999999999999999999754 3
Q ss_pred EEEEeec
Q 001097 633 RVKFMDV 639 (1158)
Q Consensus 633 RI~F~r~ 639 (1158)
+|+|+++
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 6677665
No 70
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.40 E-value=7.3e-13 Score=123.73 Aligned_cols=73 Identities=19% Similarity=0.373 Sum_probs=66.9
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC-----CceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~-----rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
..+++||||||+.+++++||+++|++||+|.+|.+... +|||||+|.+.+||..|++.|+|..+. +|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45789999999999999999999999999999999764 599999999999999999999998775 899997
Q ss_pred cc
Q 001097 639 VG 640 (1158)
Q Consensus 639 ~~ 640 (1158)
..
T Consensus 85 ~~ 86 (116)
T 2fy1_A 85 KP 86 (116)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 71
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=3e-13 Score=119.88 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=64.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCC-cceEEEecCCceEEEEecCHHHHHHHHHhhcC-Ccee----EEEEeecc
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFFPIKGFALVEYINIIDAIRAREYIRN-HFSW----RVKFMDVG 640 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGp-Le~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G-~~~~----RI~F~r~~ 640 (1158)
..+++||||||+.+++++||+++|++||. |+.+.+ ..+|||||+|.+.+||..|++.|+| ..+. +|+++++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 46799999999999999999999999999 777766 6799999999999999999999999 6554 88888663
No 72
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=6.5e-13 Score=120.08 Aligned_cols=73 Identities=23% Similarity=0.292 Sum_probs=66.0
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 636 (1158)
-..+++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.++|..|++.|+|..+. +|+|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34678999999999999999999999999999999864 3799999999999999999999998765 8888
Q ss_pred eec
Q 001097 637 MDV 639 (1158)
Q Consensus 637 ~r~ 639 (1158)
+++
T Consensus 100 a~~ 102 (106)
T 1p27_B 100 CFV 102 (106)
T ss_dssp SEE
T ss_pred ecC
Confidence 765
No 73
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.40 E-value=4.6e-13 Score=118.00 Aligned_cols=73 Identities=14% Similarity=0.045 Sum_probs=66.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
.++++||||||+.+++++||+++|++||+|.++.+.+ .||||||+|.+.+||..|++.|+|..+. +|+++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4689999999999999999999999999999999875 6899999999999999999999998765 7888876
Q ss_pred c
Q 001097 640 G 640 (1158)
Q Consensus 640 ~ 640 (1158)
.
T Consensus 86 ~ 86 (92)
T 2dgv_A 86 A 86 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 74
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.39 E-value=6.4e-13 Score=119.33 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=62.9
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcce--------EEEec------CCceEEEEecCHHHHHHHHHhhcCCcee-
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW- 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~--------V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~- 632 (1158)
.+.++||||||+.+++++||++.|++||.|.+ +.+.. .||||||+|.+.+||..|++.|+|..+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45799999999999999999999999999999 88764 3789999999999999999999998764
Q ss_pred ---EEEEe
Q 001097 633 ---RVKFM 637 (1158)
Q Consensus 633 ---RI~F~ 637 (1158)
+|+++
T Consensus 91 ~~l~V~~A 98 (99)
T 2la6_A 91 NPIKVSFA 98 (99)
T ss_dssp SBCEEEEC
T ss_pred cEEEEEec
Confidence 66665
No 75
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=5.8e-13 Score=122.75 Aligned_cols=72 Identities=25% Similarity=0.297 Sum_probs=65.9
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC----CceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI----KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~----rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
..+++||||||+.+++++||++.|++||+|++|.+... ||||||+|.+.+||.+|++.|+|..+. +|+++++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 46899999999999999999999999999999999753 899999999999999999999998765 7777755
No 76
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=8.5e-13 Score=120.87 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=70.1
Q ss_pred CCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcc--------eEEEec------CCceEEEEecCHHHHHHHHH
Q 001097 559 EDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLE--------HFFFFP------IKGFALVEYINIIDAIRARE 624 (1158)
Q Consensus 559 g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe--------~V~~~~------~rgfAFVeF~~i~DAv~A~~ 624 (1158)
|.|...+--..+++||||||+.+++++||+++|++||.|. .|.+.. .||||||+|.+.++|..|++
T Consensus 4 g~p~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 83 (113)
T 2cpe_A 4 GSSGDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVE 83 (113)
T ss_dssp SCCCCCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHH
T ss_pred CCCCCcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 3444444556789999999999999999999999999999 588764 37899999999999999999
Q ss_pred hhcCCcee----EEEEeecc
Q 001097 625 YIRNHFSW----RVKFMDVG 640 (1158)
Q Consensus 625 ~L~G~~~~----RI~F~r~~ 640 (1158)
.|+|..+. +|++++..
T Consensus 84 ~l~g~~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 84 WFDGKDFQGSKLKVSLARKK 103 (113)
T ss_dssp HHTTCEETTEECEEECSSCC
T ss_pred HcCCCccCCCEEEEEECCCC
Confidence 99998765 78887653
No 77
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=5e-13 Score=119.48 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=65.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
.++++||||||+.+++++||+++|++||+|++|.+.. .+|||||+|.+.+||.+|++.|+|..+. +|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4689999999999999999999999999999999865 4599999999999999999999998765 78888
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
+.
T Consensus 86 ~~ 87 (99)
T 1whw_A 86 TI 87 (99)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 78
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.6e-13 Score=119.59 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=60.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC------CceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
+++++||||||+.+++++||+++|++||+|.++.+... ||||||+|.+.++|..|++.|+|..+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 47899999999999999999999999999999998653 899999999999999999999998654
No 79
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.39 E-value=5.8e-13 Score=122.32 Aligned_cols=73 Identities=21% Similarity=0.351 Sum_probs=66.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
..+++||||||+.+++++||+++|++||.|++|.+... +|||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 46899999999999999999999999999999998764 699999999999999999999998765 88888
Q ss_pred ecc
Q 001097 638 DVG 640 (1158)
Q Consensus 638 r~~ 640 (1158)
++.
T Consensus 93 ~~~ 95 (115)
T 2dgo_A 93 TRK 95 (115)
T ss_dssp SCC
T ss_pred cCC
Confidence 654
No 80
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=7.5e-13 Score=121.15 Aligned_cols=77 Identities=12% Similarity=0.175 Sum_probs=68.7
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC-----CceEEEEecCHHHHHHHHHhhcCCcee----E
Q 001097 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW----R 633 (1158)
Q Consensus 563 a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~-----rgfAFVeF~~i~DAv~A~~~L~G~~~~----R 633 (1158)
+.+--.++++||||||+.+++++||+++|++||+|.+|.+... +|||||+|.+.+||..|++.|+|..+. +
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 4444567899999999999999999999999999999998764 899999999999999999999998775 7
Q ss_pred EEEeec
Q 001097 634 VKFMDV 639 (1158)
Q Consensus 634 I~F~r~ 639 (1158)
|+|++.
T Consensus 88 v~~a~~ 93 (114)
T 2do0_A 88 VKMDER 93 (114)
T ss_dssp EEECSC
T ss_pred EEEccc
Confidence 888764
No 81
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.39 E-value=5e-13 Score=118.79 Aligned_cols=73 Identities=12% Similarity=0.330 Sum_probs=66.5
Q ss_pred cccCceEEeccCCCccCHHHHH----HHhhccCCcceEEEe---cCCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001097 567 FSASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFF---PIKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~----~~F~~fGpLe~V~~~---~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 635 (1158)
-.++++||||||+.+++++||+ +.|++||.|.+|.+. ..+|||||+|.+.++|..|++.|+|..+. +|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3678999999999999999999 999999999999987 47899999999999999999999998765 788
Q ss_pred Eeec
Q 001097 636 FMDV 639 (1158)
Q Consensus 636 F~r~ 639 (1158)
|+++
T Consensus 85 ~a~~ 88 (97)
T 1nu4_A 85 YAKT 88 (97)
T ss_dssp ECSS
T ss_pred EccC
Confidence 8765
No 82
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.39 E-value=6.1e-13 Score=123.05 Aligned_cols=71 Identities=21% Similarity=0.355 Sum_probs=65.5
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
-..+++||||||+.+++++||++.|++||+|+++.+. ||||||+|.+.+||..|++.|+|..+. +|+|++.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3568999999999999999999999999999999998 899999999999999999999998765 7777765
No 83
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=7.1e-13 Score=118.98 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=65.1
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
..+++||||||+.+++++||+++|++||+|.+|++.. .||||||+|.+.+||..|++.|+|..+. +|+|++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4578999999999999999999999999999999875 3599999999999999999999998765 778776
Q ss_pred c
Q 001097 639 V 639 (1158)
Q Consensus 639 ~ 639 (1158)
+
T Consensus 95 ~ 95 (100)
T 2do4_A 95 S 95 (100)
T ss_dssp C
T ss_pred C
Confidence 5
No 84
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.38 E-value=9.3e-13 Score=122.75 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=69.0
Q ss_pred ccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC------CceEEEEecCHHHHHHHHHhhcCCcee----E
Q 001097 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----R 633 (1158)
Q Consensus 564 ~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----R 633 (1158)
-+...++++||||||+.+++++||+++|++||.|.+|.+... +|||||+|.+.++|.+|++.|+|..+. +
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 344556899999999999999999999999999999998654 899999999999999999999998775 8
Q ss_pred EEEeecc
Q 001097 634 VKFMDVG 640 (1158)
Q Consensus 634 I~F~r~~ 640 (1158)
|+|+.+.
T Consensus 96 v~~a~~~ 102 (126)
T 3ex7_B 96 VDWCFVR 102 (126)
T ss_dssp EEESEES
T ss_pred EEEecCC
Confidence 9998654
No 85
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.38 E-value=1e-12 Score=120.34 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=65.5
Q ss_pred cccCceEEeccCCCc-cCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 567 FSASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~-vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
-..+++||||||+.+ ++++||+++|++||+|++|.+ .||||||+|.+.+||.+|++.|+|..+. +|+|++.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 345799999999999 999999999999999999999 7999999999999999999999998765 7888864
No 86
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.38 E-value=3.8e-13 Score=120.72 Aligned_cols=70 Identities=26% Similarity=0.343 Sum_probs=61.7
Q ss_pred CceEEeccCCCccCHHHHHHHhhccC-CcceEEEe------cCCceEEEEecCHHHHHHHHHhhcCCc-e----eEEEEe
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHF-S----WRVKFM 637 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fG-pLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~-~----~RI~F~ 637 (1158)
|+.||||||+.++||+||+++|++|| .|.+|++. ..||||||+|.+.+||.+|++.|++.. + .+|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 68999999999999999999999999 89999874 368999999999999999999986543 2 278887
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
++
T Consensus 81 ~~ 82 (91)
T 2lxi_A 81 DP 82 (91)
T ss_dssp CS
T ss_pred CC
Confidence 66
No 87
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=8.5e-13 Score=126.92 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=65.8
Q ss_pred cccCceEEeccCCCccCHHHHH----HHhhccCCcceEEEe---cCCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001097 567 FSASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFF---PIKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~----~~F~~fGpLe~V~~~---~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 635 (1158)
..++++||||||+.+++++||+ ++|++||+|.+|.+. ..||||||+|.+.+||..|++.|+|..+. +|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3568999999999999999976 689999999999985 47999999999999999999999998765 888
Q ss_pred Eeec
Q 001097 636 FMDV 639 (1158)
Q Consensus 636 F~r~ 639 (1158)
|++.
T Consensus 106 ~a~~ 109 (127)
T 2a3j_A 106 FSET 109 (127)
T ss_dssp ECCC
T ss_pred EccC
Confidence 8865
No 88
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1e-12 Score=117.67 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=65.4
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|.+|++ |+|..+. +|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 4679999999999999999999999999999999864 58999999999999999999 9998765 88888
Q ss_pred ecc
Q 001097 638 DVG 640 (1158)
Q Consensus 638 r~~ 640 (1158)
++.
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 89
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1e-12 Score=120.53 Aligned_cols=73 Identities=11% Similarity=0.164 Sum_probs=66.0
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCce-----------
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFS----------- 631 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~----------- 631 (1158)
..+++||||||+.+++++||+++|++||.|.++.+.. .||||||+|.+.++|..|++.|+|+.+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 3568999999999999999999999999999999865 489999999999999999999999876
Q ss_pred -eEEEEeecc
Q 001097 632 -WRVKFMDVG 640 (1158)
Q Consensus 632 -~RI~F~r~~ 640 (1158)
.+|+|+++.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 378888763
No 90
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=6.5e-13 Score=120.64 Aligned_cols=73 Identities=22% Similarity=0.335 Sum_probs=65.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCC-cceEEEe-------cCCceEEEEecCHHHHHHHHHhhc-C-Ccee----E
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFF-------PIKGFALVEYINIIDAIRAREYIR-N-HFSW----R 633 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGp-Le~V~~~-------~~rgfAFVeF~~i~DAv~A~~~L~-G-~~~~----R 633 (1158)
.++++||||||+.+++++||+++|++||. |.+|.+. ..||||||+|.+.++|..|++.|+ | ..+. +
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35789999999999999999999999999 9999987 579999999999999999999996 4 5544 8
Q ss_pred EEEeecc
Q 001097 634 VKFMDVG 640 (1158)
Q Consensus 634 I~F~r~~ 640 (1158)
|+|+++.
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 8988763
No 91
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.3e-12 Score=117.22 Aligned_cols=72 Identities=13% Similarity=0.194 Sum_probs=63.4
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEE-EecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFF-FFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~-~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
..+++||||||+.+++++||+++|++||.|+... .-..+|||||+|.+.+||..|++.|+|..+. +|+++++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4578999999999999999999999999997322 2358999999999999999999999998765 8888765
No 92
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.37 E-value=1.1e-12 Score=119.58 Aligned_cols=72 Identities=26% Similarity=0.320 Sum_probs=65.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
..++.||||||+.+++++||+++|++||+|.+|.+... +|||||+|.+.++|..|++.|+|..+. +|+|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999998643 799999999999999999999998765 78888
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
++
T Consensus 104 ~~ 105 (110)
T 1oo0_B 104 FV 105 (110)
T ss_dssp EE
T ss_pred cc
Confidence 66
No 93
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=6.6e-13 Score=119.74 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=66.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
.++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 4689999999999999999999999999999999864 3689999999999999999999998765 88888
Q ss_pred ecc
Q 001097 638 DVG 640 (1158)
Q Consensus 638 r~~ 640 (1158)
++.
T Consensus 93 ~~~ 95 (103)
T 2cq0_A 93 KPS 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 663
No 94
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.37 E-value=7.9e-13 Score=119.77 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=65.7
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 640 (1158)
..++++||||||+.+++++||+++|++||.|.+|.+. |+||||+|.+.+||..|++.|+|..+. +|+|+++.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 3578999999999999999999999999999999886 689999999999999999999998764 88888653
No 95
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=1.5e-12 Score=125.54 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=65.6
Q ss_pred cccccCce--EEeccCCCccCHHHHHHHhhccCCcceEEEecCCce-EEEEecCHHHHHHHHHhhcCCcee------EEE
Q 001097 565 DIFSASKQ--LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGF-ALVEYINIIDAIRAREYIRNHFSW------RVK 635 (1158)
Q Consensus 565 dv~~~S~~--LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgf-AFVeF~~i~DAv~A~~~L~G~~~~------RI~ 635 (1158)
|-..+++- ||||||+..+++++|+++|++||.|.+|+++..+|| |||+|.+.+||.+|++.|+|..+. ||.
T Consensus 18 ~~~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 18 DPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp CCCCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred CCCCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 44456655 579999999999999999999999999999775697 999999999999999999999762 788
Q ss_pred Eeec
Q 001097 636 FMDV 639 (1158)
Q Consensus 636 F~r~ 639 (1158)
|+++
T Consensus 98 ~Ak~ 101 (124)
T 2e5i_A 98 YARP 101 (124)
T ss_dssp CCSC
T ss_pred EecC
Confidence 8876
No 96
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=6.1e-13 Score=119.63 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=65.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
..+++||||||+.+++++||+++|++||.|.++.+... +|||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45799999999999999999999999999999998753 799999999999999999999998765 88887
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
++
T Consensus 86 ~~ 87 (104)
T 1p1t_A 86 AS 87 (104)
T ss_dssp TC
T ss_pred CC
Confidence 65
No 97
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.37 E-value=1.1e-12 Score=120.84 Aligned_cols=73 Identities=18% Similarity=0.171 Sum_probs=65.9
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
..+++||||||+.+++++||+++|++||+|.+|.+... ||||||+|.+.++|.+|++.|+|..+. +|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 46799999999999999999999999999999998653 589999999999999999999998765 88888
Q ss_pred ecc
Q 001097 638 DVG 640 (1158)
Q Consensus 638 r~~ 640 (1158)
++.
T Consensus 103 ~~~ 105 (115)
T 2cpz_A 103 RSK 105 (115)
T ss_dssp CCS
T ss_pred CCC
Confidence 663
No 98
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.36 E-value=8.6e-13 Score=114.85 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=63.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhcc----C-------CcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee--EE
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRF----G-------PLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--RV 634 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~f----G-------pLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI 634 (1158)
.++++||||||+.+++++||++.|++| | +|.++++.++||||||+|.+.+||.+|+ .|+|..+. +|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 468999999999999999999999999 8 9999999999999999999999999999 99998765 45
Q ss_pred EEee
Q 001097 635 KFMD 638 (1158)
Q Consensus 635 ~F~r 638 (1158)
++.|
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 4433
No 99
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.3e-12 Score=117.22 Aligned_cols=75 Identities=23% Similarity=0.278 Sum_probs=66.5
Q ss_pred ccccccCceEEeccCCCccCHHHHHHHhhcc--CCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRF--GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 564 ~dv~~~S~~LWVGnL~~~vte~dL~~~F~~f--GpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
-+...++++||||||+.+++++||+.+|++| |.|.+|.+ .||||||+|.+.++|.+|++.|+|..+. +|+|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK--IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3556789999999999999999999999999 88888876 4799999999999999999999998765 78887
Q ss_pred ecc
Q 001097 638 DVG 640 (1158)
Q Consensus 638 r~~ 640 (1158)
++.
T Consensus 87 ~~~ 89 (99)
T 2cpd_A 87 KPV 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 663
No 100
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=8.5e-13 Score=119.02 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=66.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
.++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.++|..|++.|+|..+. +|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 4689999999999999999999999999999999864 4799999999999999999999998765 88888
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
+.
T Consensus 91 ~~ 92 (103)
T 2dnm_A 91 RY 92 (103)
T ss_dssp SS
T ss_pred Cc
Confidence 75
No 101
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=1.1e-12 Score=119.18 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=65.6
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------cCCceEEEEecCHHHHHHHHHhhc------CCcee--
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIR------NHFSW-- 632 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~L~------G~~~~-- 632 (1158)
..++++||||||+.+++++||+++|++||+|.+|.+. ..+|||||+|.+.++|..|++.|+ |..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3568999999999999999999999999999999986 368999999999999999999999 77654
Q ss_pred --EEEEeec
Q 001097 633 --RVKFMDV 639 (1158)
Q Consensus 633 --RI~F~r~ 639 (1158)
+|+++++
T Consensus 92 ~l~v~~a~~ 100 (111)
T 1x4h_A 92 QLKVDLAVT 100 (111)
T ss_dssp EEEEECCCC
T ss_pred EEEEEECCC
Confidence 7777765
No 102
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.36 E-value=7.1e-13 Score=122.25 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=63.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
..+++||||||+.+++++||+++|++||+|.+|.+.+ .||||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 4679999999999999999999999999999999864 3899999999999999999999998764 66665
No 103
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.1e-12 Score=117.60 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=64.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
.++++|||||+ +++++||+++|++||+|.+|.+-..||||||+|.+.+||.+|++.|+|..+. +|+|+++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 46789999997 9999999999999999999999889999999999999999999999998765 7777765
No 104
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.36 E-value=5.1e-13 Score=118.33 Aligned_cols=71 Identities=10% Similarity=-0.059 Sum_probs=61.6
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
.+++||||||+.+++++||+++|++||.|.++.+.. .||||||+|.+.+||.+|++.|+|..+. +|+|+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 468999999999999999999999999999766542 6799999999999999999999998765 666654
Q ss_pred c
Q 001097 639 V 639 (1158)
Q Consensus 639 ~ 639 (1158)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 105
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.35 E-value=1.5e-12 Score=117.92 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=64.7
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
..++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.+||.+|++.|+|..+. +|+|+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 36789999999999999999999999999999999874 5899999999999999999999998765 66665
No 106
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.34 E-value=1.6e-12 Score=126.75 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=63.3
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec-CCce-EEEEecCHHHHHHHHHhhcCCce----e--EEEEeec
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGF-ALVEYINIIDAIRAREYIRNHFS----W--RVKFMDV 639 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-~rgf-AFVeF~~i~DAv~A~~~L~G~~~----~--RI~F~r~ 639 (1158)
-.||||||+..+||++|+++|++||+|.+|+++. .||| |||+|.+.+||.+|++.|+|..+ | ||+|++.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 3466999999999999999999999999999876 7899 99999999999999999999976 3 8999976
No 107
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2.9e-12 Score=115.67 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=66.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|..|++.|+|..+. +|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 5689999999999999999999999999999999865 4689999999999999999999998765 88888
Q ss_pred ecc
Q 001097 638 DVG 640 (1158)
Q Consensus 638 r~~ 640 (1158)
++.
T Consensus 93 ~~~ 95 (105)
T 1x5u_A 93 SAH 95 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 663
No 108
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.34 E-value=8.6e-13 Score=146.33 Aligned_cols=117 Identities=16% Similarity=0.202 Sum_probs=86.8
Q ss_pred cccCceEEeccC--CCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCceeEEEEeeccCCCC
Q 001097 567 FSASKQLWLGSF--GPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGLGTK 644 (1158)
Q Consensus 567 ~~~S~~LWVGnL--~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~F~r~~~g~r 644 (1158)
-.+|++|||||+ +.++||+||+++|++||.|++|++.++||||||+|.+.+||.+|+++|+|+.+ ++ ..|
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~--~~----~~g-- 86 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEV--VD----DLG-- 86 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEE--EC----TTS--
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCcc--cc----ccC--
Confidence 468999999995 67899999999999999999999999999999999999999999999999765 11 111
Q ss_pred cccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHh
Q 001097 645 GVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1158)
Q Consensus 645 g~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~ 714 (1158)
.+..|||-++.... ..++ .+..+.+-=.+.-+|-+.+|+..-++.++
T Consensus 87 ---------~~~~ly~~~~~~~~-----~~~~---------~~~~lp~Gl~~~p~fis~~Ee~~Ll~~i~ 133 (345)
T 3tht_A 87 ---------QKITLYLNFVEKVQ-----WKEL---------RPQALPPGLMVVEEIISSEEEKMLLESVD 133 (345)
T ss_dssp ---------CEEECEEEECSSEE-----EEEE---------ECCSCCTTEEEETTCSCHHHHHHHHTTCC
T ss_pred ---------CceEEEEEEeeccc-----cccc---------ccccCCCceEEEcCcCCHHHHHHHHHhcc
Confidence 23467887764332 1111 11233332334568999999886555554
No 109
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.34 E-value=2.6e-12 Score=119.90 Aligned_cols=74 Identities=18% Similarity=0.133 Sum_probs=67.0
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001097 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1158)
Q Consensus 566 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 636 (1158)
-..++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.+||..|++.|+|..+. +|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999975 5899999999999999999999998664 7787
Q ss_pred eec
Q 001097 637 MDV 639 (1158)
Q Consensus 637 ~r~ 639 (1158)
+..
T Consensus 111 a~~ 113 (124)
T 2kt5_A 111 VAS 113 (124)
T ss_dssp ECC
T ss_pred eCC
Confidence 755
No 110
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.34 E-value=1e-12 Score=114.20 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=57.7
Q ss_pred CceEEeccCCCcc------CHHHHHHHhhccCCcceEEEec----CCceEEEEecCHHHHHHHHHhhcCCce
Q 001097 570 SKQLWLGSFGPEA------SEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFS 631 (1158)
Q Consensus 570 S~~LWVGnL~~~v------te~dL~~~F~~fGpLe~V~~~~----~rgfAFVeF~~i~DAv~A~~~L~G~~~ 631 (1158)
++.||||||+.++ +++||+++|++||+|.++.+.+ .||||||+|.+.+||.+|++.|+|..+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 72 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 72 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCccc
Confidence 5789999999999 8899999999999999999863 589999999999999999999999765
No 111
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=8.7e-13 Score=121.69 Aligned_cols=72 Identities=15% Similarity=0.215 Sum_probs=64.7
Q ss_pred cCceEEeccCCCccCHHHHH---HHhhccCCcceEEEec---------CCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001097 569 ASKQLWLGSFGPEASEAHIR---FQIDRFGPLEHFFFFP---------IKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~---~~F~~fGpLe~V~~~~---------~rgfAFVeF~~i~DAv~A~~~L~G~~~~---- 632 (1158)
..++||||||+.+++++||+ ++|++||+|.+|.+.+ .||||||+|.+.+||.+|++.|+|..+.
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 47899999999999999999 9999999999999974 3479999999999999999999998765
Q ss_pred EEEEeecc
Q 001097 633 RVKFMDVG 640 (1158)
Q Consensus 633 RI~F~r~~ 640 (1158)
+|+|+.+.
T Consensus 94 ~V~~a~~k 101 (111)
T 2cpi_A 94 KASLGTTK 101 (111)
T ss_dssp EEESCCCC
T ss_pred EEEecccc
Confidence 77877653
No 112
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.34 E-value=1.9e-12 Score=124.55 Aligned_cols=74 Identities=20% Similarity=0.357 Sum_probs=68.0
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 566 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
.-..+++||||||+.+++++||+++|++||.|++|++.+ .||||||+|.+.++|..|++.|+|..+. +|+|+++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 345789999999999999999999999999999999988 5999999999999999999999998765 8888865
No 113
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.34 E-value=1.4e-12 Score=120.42 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=64.9
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|..|++.|+|..+. +|+++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4679999999999999999999999999999999864 4799999999999999999999998765 77776
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
++
T Consensus 104 ~~ 105 (108)
T 2jrs_A 104 TE 105 (108)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 114
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.34 E-value=1.6e-12 Score=122.09 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=60.9
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
-.++++||||||+.+++++||+++|++||+|++|.+.+ .||||||+|.+.+||.+|++.|+|..+.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 131 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 131 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35789999999999999999999999999999999854 4899999999999999999999997664
No 115
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=2.4e-12 Score=117.99 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=64.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCce---------eEEEEee
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS---------WRVKFMD 638 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~---------~RI~F~r 638 (1158)
..+++||||||+.+++++||+++|++||+|..+.+... |||||+|.+.+||..|++.|+|+.+ .+|++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 45799999999999999999999999999999999887 9999999999999999999999854 3777775
Q ss_pred c
Q 001097 639 V 639 (1158)
Q Consensus 639 ~ 639 (1158)
+
T Consensus 92 ~ 92 (108)
T 1x4c_A 92 P 92 (108)
T ss_dssp C
T ss_pred C
Confidence 5
No 116
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1e-12 Score=118.51 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=65.4
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhc-cCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCc-ee----EEEE
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDR-FGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHF-SW----RVKF 636 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~-fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~-~~----RI~F 636 (1158)
.++++||||||+.+++++||+++|++ ||.|.+|.+.. .||||||+|.+.++|..|++.|+|.. +. +|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 46899999999999999999999999 99999999875 48999999999999999999999987 54 7777
Q ss_pred eec
Q 001097 637 MDV 639 (1158)
Q Consensus 637 ~r~ 639 (1158)
+++
T Consensus 87 a~~ 89 (104)
T 2dhg_A 87 AIP 89 (104)
T ss_dssp CCC
T ss_pred ccC
Confidence 754
No 117
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.33 E-value=1.4e-12 Score=131.78 Aligned_cols=71 Identities=14% Similarity=0.190 Sum_probs=64.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec--CCceEEEEecCHHHHHHHHHhhcCCce----e--EEEEeecc
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFS----W--RVKFMDVG 640 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~--~rgfAFVeF~~i~DAv~A~~~L~G~~~----~--RI~F~r~~ 640 (1158)
...||||||+..++|++|+++|++||.|++|+++. .||||||+|.+.+||.+|++.|+|..+ + ||+|+++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 35689999999999999999999999999999874 578999999999999999999999977 3 89998763
No 118
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.33 E-value=1.7e-12 Score=113.42 Aligned_cols=70 Identities=13% Similarity=0.232 Sum_probs=63.3
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
.+++||||||+.+++++||++.|++||+|.++.+.. .+|||||+|.+.++|.+|+ .|+|..+. +|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999864 3899999999999999999 99998765 677765
Q ss_pred c
Q 001097 639 V 639 (1158)
Q Consensus 639 ~ 639 (1158)
+
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 119
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.33 E-value=1.7e-12 Score=118.89 Aligned_cols=71 Identities=15% Similarity=0.293 Sum_probs=60.9
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCC--cceEEEec------CCceEEEEecCHHHHHHHHHhhcCCc--------ee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGP--LEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF--------SW 632 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGp--Le~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~--------~~ 632 (1158)
.-++||||||++++||++|+++|++||. +.+|++.+ +||||||+|.+.+||.+|++.|+|.. ..
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3468999999999999999999999996 55888743 68999999999999999999999973 22
Q ss_pred EEEEeec
Q 001097 633 RVKFMDV 639 (1158)
Q Consensus 633 RI~F~r~ 639 (1158)
+|+|+++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 7777764
No 120
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=3.4e-12 Score=117.60 Aligned_cols=72 Identities=18% Similarity=0.307 Sum_probs=64.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
...++||||||+.+++++||+++|++||+|++|++.. .||||||+|.+.++|.+|++.|+| .+. +|+++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 4579999999999999999999999999999999965 468999999999999999999998 443 88888
Q ss_pred ecc
Q 001097 638 DVG 640 (1158)
Q Consensus 638 r~~ 640 (1158)
...
T Consensus 94 ~~~ 96 (116)
T 2cqd_A 94 YLG 96 (116)
T ss_dssp TTT
T ss_pred ccC
Confidence 543
No 121
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.31 E-value=1.8e-12 Score=123.71 Aligned_cols=72 Identities=24% Similarity=0.260 Sum_probs=65.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.+||.+|++.|+|..+. +|+|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5689999999999999999999999999999999863 6899999999999999999999998765 67766
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
++
T Consensus 124 ~~ 125 (129)
T 2kxn_B 124 IT 125 (129)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 122
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=3e-12 Score=115.91 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=64.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 636 (1158)
.++++||||||+.+++++||+++|+.|| |.+|.+.. .+|||||+|.+.++|.+|+ .|+|..+. +|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4579999999999999999999999999 99999864 3789999999999999999 99998765 8888
Q ss_pred eecc
Q 001097 637 MDVG 640 (1158)
Q Consensus 637 ~r~~ 640 (1158)
+++.
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8764
No 123
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.31 E-value=2.8e-12 Score=113.31 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=64.3
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
.+++||||||+.+++++||++.|++| .|.++.+...||||||+|.+.+||.+|++.|+|..+. +|+++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 47899999999999999999999999 9999999889999999999999999999999998765 6777644
No 124
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.30 E-value=5.2e-12 Score=122.19 Aligned_cols=75 Identities=23% Similarity=0.283 Sum_probs=67.9
Q ss_pred cccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EE
Q 001097 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 634 (1158)
Q Consensus 565 dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI 634 (1158)
+...++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.++|..|++.|+|..+. +|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4456789999999999999999999999999999999853 4689999999999999999999998765 89
Q ss_pred EEeec
Q 001097 635 KFMDV 639 (1158)
Q Consensus 635 ~F~r~ 639 (1158)
+|+++
T Consensus 114 ~~a~~ 118 (156)
T 1h2v_Z 114 DWDAG 118 (156)
T ss_dssp EEESC
T ss_pred EECCC
Confidence 99865
No 125
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.30 E-value=3.1e-12 Score=120.61 Aligned_cols=70 Identities=11% Similarity=-0.038 Sum_probs=63.2
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccC-CcceEEEe--cCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFF--PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fG-pLe~V~~~--~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
..++||||||+.+++++||++.|++|| .|..+.+. ..||||||+|.+.+||.+|++.|+|..+. +|++++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 467999999999999999999999999 99999985 48999999999999999999999998765 566654
No 126
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=3.3e-12 Score=117.03 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=64.1
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcc----eEEEe--cCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLE----HFFFF--PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe----~V~~~--~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
.++++||||||+.+++++||+++|++||.|+ .+.+. ..||||||+|.+.++|..|++.|+|..+. +|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 4689999999999999999999999999994 44433 37899999999999999999999998765 89998
Q ss_pred ecc
Q 001097 638 DVG 640 (1158)
Q Consensus 638 r~~ 640 (1158)
++.
T Consensus 103 ~~~ 105 (115)
T 2cpx_A 103 KNK 105 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 763
No 127
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=2.9e-12 Score=114.37 Aligned_cols=71 Identities=10% Similarity=-0.034 Sum_probs=61.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
...++||||||+.+++++||+++|++||.|.++.+.. .||||||+|.+.+||.+|++.|+|..+. +|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3568999999999999999999999999998655432 5899999999999999999999998765 77776
Q ss_pred e
Q 001097 638 D 638 (1158)
Q Consensus 638 r 638 (1158)
+
T Consensus 93 ~ 93 (98)
T 2cqp_A 93 S 93 (98)
T ss_dssp S
T ss_pred C
Confidence 4
No 128
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.30 E-value=1.9e-12 Score=114.80 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=58.1
Q ss_pred ceEEeccCCCccCHHHHHHHhhccC--CcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFG--PLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fG--pLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
.+||||||+.+++++||+++|++|| .|.++++.. .||||||+|.+.+||.+|++.|+|..+. +|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999753 4789999999999999999999998765 566554
Q ss_pred c
Q 001097 639 V 639 (1158)
Q Consensus 639 ~ 639 (1158)
+
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 129
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.28 E-value=6.3e-12 Score=118.99 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=65.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
.++++|||||+ +++++||+++|++||+|.+|.+...||||||+|.+.++|..|++.|+|..+. +|+|+++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 46899999996 7999999999999999999999899999999999999999999999998765 8888876
No 130
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=3.1e-12 Score=117.56 Aligned_cols=71 Identities=13% Similarity=0.116 Sum_probs=63.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------cCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
..+++||||||+.+++++||+++|++||.|.+|.+. ..||||||+|.+.++|..|+ .|+|..+. +|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 457999999999999999999999999999999996 36799999999999999999 99998765 67776
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
+.
T Consensus 102 ~~ 103 (114)
T 2cq4_A 102 QA 103 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 131
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.28 E-value=2.3e-12 Score=113.40 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=61.0
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
++||||||+.+++++||++.|++||+|.++.+.+ .||||||+|.+.+ |.+|++.|+|..+. +|+++..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 6899999999999999999999999999999864 4899999999999 99999999998765 7888765
No 132
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.28 E-value=3.4e-12 Score=118.63 Aligned_cols=71 Identities=11% Similarity=0.192 Sum_probs=64.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
..+++||||||+.+++++||++.|++||+|++|.+.. .+|||||+|.+.++|..|+ .|+|..+. +|+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 4579999999999999999999999999999999864 3899999999999999999 89998765 78887
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
+.
T Consensus 113 ~~ 114 (124)
T 2jwn_A 113 RT 114 (124)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 133
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.28 E-value=3.2e-12 Score=116.08 Aligned_cols=71 Identities=14% Similarity=0.064 Sum_probs=62.5
Q ss_pred cCceEEeccCCC------ccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001097 569 ASKQLWLGSFGP------EASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1158)
Q Consensus 569 ~S~~LWVGnL~~------~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~---- 632 (1158)
.++.||||||+. ++++++|+++|++||+|.+|.+.. .||||||+|.+.++|.+|++.|+|..+.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 478999999999 999999999999999999999852 6799999999999999999999997543
Q ss_pred -EEEEeec
Q 001097 633 -RVKFMDV 639 (1158)
Q Consensus 633 -RI~F~r~ 639 (1158)
+|+++++
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 6666543
No 134
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.27 E-value=1e-11 Score=111.68 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=63.2
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEE-----ecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001097 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF-----FPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1158)
Q Consensus 566 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~-----~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 636 (1158)
--..+++||||||+.+++++||+++|++||.|.+..+ -..||||||+|.+.+||.+|++ |+|..+. +|++
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 3346889999999999999999999999998877222 2479999999999999999999 9998765 8888
Q ss_pred eecc
Q 001097 637 MDVG 640 (1158)
Q Consensus 637 ~r~~ 640 (1158)
+++.
T Consensus 92 a~~~ 95 (101)
T 1fj7_A 92 PKGR 95 (101)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8664
No 135
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.27 E-value=8.1e-12 Score=112.89 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=63.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
.++++||||||+.+++++||+++|++|| |.+|.+.. .||||||+|.+.+||.+|+ .|+|..+. +|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4689999999999999999999999998 99999864 3789999999999999999 89998765 88888
Q ss_pred ecc
Q 001097 638 DVG 640 (1158)
Q Consensus 638 r~~ 640 (1158)
++.
T Consensus 91 ~~~ 93 (103)
T 2dng_A 91 EGR 93 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 663
No 136
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=5.7e-12 Score=116.43 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=60.7
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
..++||||||+.++|++||++.|++||+|.+|.+.+ .||||||+|.+.++|..|++ |+|..+. +|++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 468999999999999999999999999999999875 68999999999999999999 8887653 55544
No 137
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.27 E-value=4.4e-12 Score=121.07 Aligned_cols=72 Identities=14% Similarity=0.228 Sum_probs=64.0
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcce--------EEE---ecCCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFF---FPIKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~--------V~~---~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~---- 632 (1158)
.++++||||||+.++++++|+++|++||.|.+ +.. -..||||||+|.+.++|.+|++.|+|..+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 46899999999999999999999999999987 332 248999999999999999999999998765
Q ss_pred EEEEeec
Q 001097 633 RVKFMDV 639 (1158)
Q Consensus 633 RI~F~r~ 639 (1158)
+|+|+++
T Consensus 123 ~V~~a~~ 129 (143)
T 3egn_A 123 VVQFARS 129 (143)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 7888865
No 138
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.27 E-value=4.4e-12 Score=115.95 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=62.1
Q ss_pred ccCceEEeccCCCcc------CHHHHHHHhhccCCcceEEEe----cCCceEEEEecCHHHHHHHHHhhcCCcee-----
Q 001097 568 SASKQLWLGSFGPEA------SEAHIRFQIDRFGPLEHFFFF----PIKGFALVEYINIIDAIRAREYIRNHFSW----- 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~v------te~dL~~~F~~fGpLe~V~~~----~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----- 632 (1158)
..+++||||||+.++ ++++|+++|++||+|.+|.+. ..||||||+|.+.++|..|++.|+|..+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 347899999999999 899999999999999999987 36899999999999999999999997543
Q ss_pred EEEEee
Q 001097 633 RVKFMD 638 (1158)
Q Consensus 633 RI~F~r 638 (1158)
+|++++
T Consensus 93 ~V~~a~ 98 (105)
T 2nlw_A 93 RVNLFT 98 (105)
T ss_dssp EEECSC
T ss_pred EEEEcc
Confidence 555553
No 139
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.27 E-value=8.6e-12 Score=120.16 Aligned_cols=75 Identities=19% Similarity=0.272 Sum_probs=67.3
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001097 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1158)
Q Consensus 566 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 635 (1158)
....+++||||||+.+++++||+++|++||.|+++.+.. .||||||+|.+.++|..|++.|+|..+. +|+
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345689999999999999999999999999999999854 6799999999999999999999998664 888
Q ss_pred Eeecc
Q 001097 636 FMDVG 640 (1158)
Q Consensus 636 F~r~~ 640 (1158)
|++++
T Consensus 146 ~a~~~ 150 (158)
T 2kn4_A 146 MARYG 150 (158)
T ss_dssp EECCS
T ss_pred ECCCC
Confidence 88763
No 140
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.26 E-value=7.1e-12 Score=115.69 Aligned_cols=76 Identities=13% Similarity=0.222 Sum_probs=59.7
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001097 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1158)
Q Consensus 563 a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~---- 632 (1158)
..|--..+++||||||+.+++++||+++|++||+|++|.+.+ .||||||+|.+.+||.+|++.| |..+.
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l 96 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTI 96 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEE
Confidence 455557789999999999999999999999999999999864 4799999999999999999876 34332
Q ss_pred EEEEeec
Q 001097 633 RVKFMDV 639 (1158)
Q Consensus 633 RI~F~r~ 639 (1158)
+|+++.+
T Consensus 97 ~V~~a~~ 103 (109)
T 2rs2_A 97 DPKVAFP 103 (109)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 6777755
No 141
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.26 E-value=9.8e-12 Score=108.69 Aligned_cols=62 Identities=11% Similarity=0.304 Sum_probs=55.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCc
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF 630 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~ 630 (1158)
..+++||||||+.++++++|++.|++||+|.++.+.. .+|||||+|.+.++|.+|++. +|..
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~ 76 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHR 76 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCE
Confidence 4679999999999999999999999999999999864 378999999999999999976 4443
No 142
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.26 E-value=3.6e-12 Score=120.69 Aligned_cols=72 Identities=17% Similarity=0.251 Sum_probs=63.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcce--EEEec------CCceEEEEecCHHHHHHHHHhhcCC----cee---
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--FFFFP------IKGFALVEYINIIDAIRAREYIRNH----FSW--- 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~--V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~----~~~--- 632 (1158)
.++++||||||+.+++|+||+++|++||.|.. |++.. .||||||+|.+. ||.+|++.|+|. .+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 46789999999999999999999999999976 88753 579999999999 999999999998 554
Q ss_pred -EEEEeecc
Q 001097 633 -RVKFMDVG 640 (1158)
Q Consensus 633 -RI~F~r~~ 640 (1158)
+|+|+++.
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 78888653
No 143
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=5.6e-12 Score=113.31 Aligned_cols=73 Identities=19% Similarity=0.164 Sum_probs=62.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe--cCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF--PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~--~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 640 (1158)
.++++||||||+.+++++||+++|++||.|.-++.. ..||||||+|.+.+||.+|++.|+|..+. +|+|+++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 468999999999999999999999999988432221 26899999999999999999999998764 78888653
No 144
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.25 E-value=3.3e-12 Score=115.60 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=60.8
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-------CCceEEEEecCHHHHHHHHHhhcCCcee----EE
Q 001097 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 634 (1158)
Q Consensus 566 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI 634 (1158)
.-...++||||||+.+++++||++.|++|| |.+|.+.. .||||||+|.+.++|.+|+ .|+|..+. +|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345689999999999999999999999999 99999864 3799999999999999999 99998764 67
Q ss_pred EEeec
Q 001097 635 KFMDV 639 (1158)
Q Consensus 635 ~F~r~ 639 (1158)
+++++
T Consensus 93 ~~a~~ 97 (100)
T 2j76_E 93 DVADQ 97 (100)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 77654
No 145
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.25 E-value=7.6e-12 Score=123.51 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=62.9
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccC--CcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFG--PLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fG--pLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 635 (1158)
...++||||||+.+++|+||+++|++|| .|.+|++.. .||||||+|.+.+||.+|++.|+|..+. +|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 999999853 5899999999999999999999998765 777
Q ss_pred Eeec
Q 001097 636 FMDV 639 (1158)
Q Consensus 636 F~r~ 639 (1158)
++++
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 7754
No 146
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.25 E-value=7.3e-12 Score=106.70 Aligned_cols=60 Identities=15% Similarity=0.322 Sum_probs=55.2
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
+||||||+.+++++||++.|++||+|.++.+.. .||||||+|.+.++|.+|++ |+|..+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~ 66 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN 66 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC
Confidence 599999999999999999999999999999864 36899999999999999998 8988664
No 147
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.25 E-value=7.3e-12 Score=106.71 Aligned_cols=60 Identities=15% Similarity=0.362 Sum_probs=54.6
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCce
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS 631 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~ 631 (1158)
++||||||+.+++++||++.|++||+|.++.+.+ .||||||+|.+.++|.+|++.|+ ..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~ 66 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL 66 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc
Confidence 5799999999999999999999999999999865 37899999999999999999887 443
No 148
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.25 E-value=1.2e-11 Score=118.01 Aligned_cols=70 Identities=24% Similarity=0.390 Sum_probs=63.5
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC-----CceEEEEecCHHHHHHHHHhhcCCcee-------EEEE
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW-------RVKF 636 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~-----rgfAFVeF~~i~DAv~A~~~L~G~~~~-------RI~F 636 (1158)
.+++||||||+.++++++|++.|++||.|+++.+.+. +|||||+|.+.+||..|++.|+|..+. +|+|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 6789999999999999999999999999999999764 899999999999999999999997542 7777
Q ss_pred ee
Q 001097 637 MD 638 (1158)
Q Consensus 637 ~r 638 (1158)
++
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 149
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.25 E-value=7.7e-12 Score=120.08 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=66.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
..+++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|.+|++.|+|..+. +|+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4578999999999999999999999999999999853 5789999999999999999999998775 88888
Q ss_pred ecc
Q 001097 638 DVG 640 (1158)
Q Consensus 638 r~~ 640 (1158)
+++
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 150
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.24 E-value=1.2e-11 Score=110.73 Aligned_cols=59 Identities=12% Similarity=0.247 Sum_probs=52.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-CCceEEEEecCHHHHHHHHHhhcCCc
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHF 630 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~ 630 (1158)
.+..+||||||+.+++|+||++.|++||+|.++.+.. .||||||+|.+.++|.+ |+|..
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~ 68 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGED 68 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCC
Confidence 4678999999999999999999999999999999876 79999999999999983 56654
No 151
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=5.5e-12 Score=114.12 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=63.5
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC------CceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001097 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1158)
Q Consensus 566 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 635 (1158)
--...++||||||+.+++++||+++|++||+|.+|.+... ||||||+|.+.++|..|++. +|..+. +|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 3457899999999999999999999999999999998653 68999999999999999998 887664 566
Q ss_pred Eeec
Q 001097 636 FMDV 639 (1158)
Q Consensus 636 F~r~ 639 (1158)
++.+
T Consensus 91 ~a~~ 94 (105)
T 2dh8_A 91 PCTP 94 (105)
T ss_dssp CSCC
T ss_pred EccC
Confidence 6544
No 152
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.2e-11 Score=113.98 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=63.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
...++||||||+.+++++||+++|++||.|.+|.+.. .||||||+|.+.++|..|++. +|..+. +|+++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4579999999999999999999999999999999865 378999999999999999998 776654 77777
Q ss_pred ecc
Q 001097 638 DVG 640 (1158)
Q Consensus 638 r~~ 640 (1158)
++.
T Consensus 104 ~~~ 106 (116)
T 1x4b_A 104 VAR 106 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 153
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.23 E-value=1.3e-11 Score=121.19 Aligned_cols=72 Identities=26% Similarity=0.320 Sum_probs=65.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
..+++||||||+.++++++|+.+|++||+|.+|.+... +|||||+|.+.++|..|++.|+|..+. +|+|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35789999999999999999999999999999999754 799999999999999999999998765 78888
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
.+
T Consensus 150 ~~ 151 (165)
T 1rk8_A 150 FV 151 (165)
T ss_dssp EE
T ss_pred cC
Confidence 65
No 154
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.23 E-value=9.9e-12 Score=131.93 Aligned_cols=72 Identities=24% Similarity=0.379 Sum_probs=66.9
Q ss_pred ccCceEEeccCCCcc---------CHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCce-------
Q 001097 568 SASKQLWLGSFGPEA---------SEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS------- 631 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~v---------te~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~------- 631 (1158)
..+++||||||+.++ +|++|+.+|++||+|++|.+.+.||||||.|.+.++|..|+++|+|..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e 211 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKE 211 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccccc
Confidence 468999999999998 8999999999999999999999999999999999999999999999988
Q ss_pred ---------eEEEEeec
Q 001097 632 ---------WRVKFMDV 639 (1158)
Q Consensus 632 ---------~RI~F~r~ 639 (1158)
.+|+|+..
T Consensus 212 ~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 212 WDDRREGTGLLVKWANE 228 (240)
T ss_dssp GGGGGGSCCCEEEECC-
T ss_pred ccccCCCCEEEEEEccC
Confidence 28888854
No 155
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.1e-11 Score=109.00 Aligned_cols=55 Identities=20% Similarity=0.336 Sum_probs=51.0
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-CCceEEEEecCHHHHHHH
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRA 622 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A 622 (1158)
..+++||||||+.+++|+||+++|++||+|.+|++.. .||||||+|.+.++|.+|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH
Confidence 3689999999999999999999999999999999876 799999999999999754
No 156
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.23 E-value=8.7e-12 Score=116.12 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=58.3
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
.+++||||||+.+++++||+++|++||+|.++.+... |||||+|.+.+||.+|++.|+|+.+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~ 77 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFR 77 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4689999999999999999999999999999999877 99999999999999999999998664
No 157
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.5e-11 Score=110.85 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=61.2
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHh---hcCCceeEEEEe
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREY---IRNHFSWRVKFM 637 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~---L~G~~~~RI~F~ 637 (1158)
..++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|.+|++. |+| +.++|+++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g-~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG-RWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETT-EEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCC-eEEEEEec
Confidence 35689999999999999999999999999999999864 368999999999999999996 333 22377777
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
++
T Consensus 91 ~~ 92 (103)
T 2cqg_A 91 NS 92 (103)
T ss_dssp CT
T ss_pred CC
Confidence 65
No 158
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=110.49 Aligned_cols=70 Identities=21% Similarity=0.246 Sum_probs=59.9
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCc-eEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKG-FALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rg-fAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
+.+++||||||+.+++++||+++|++||+|.+|.+.+..| ||||+|.+.++|.+|++ |+|..+. +|+++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 3578999999999999999999999999999995544322 99999999999999999 9998765 555543
No 159
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.9e-11 Score=113.30 Aligned_cols=73 Identities=15% Similarity=0.053 Sum_probs=63.4
Q ss_pred cccccCceEEeccCCCccCHHHHHHHhhccCCc-ceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee----EE
Q 001097 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPL-EHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RV 634 (1158)
Q Consensus 565 dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpL-e~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI 634 (1158)
+.-...++||||||+.+++++||+++|+.||.| .+|.+.. .||||||+|.+.+||..|++. +|..+. +|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 445678999999999999999999999999999 8898853 789999999999999999988 887654 56
Q ss_pred EEee
Q 001097 635 KFMD 638 (1158)
Q Consensus 635 ~F~r 638 (1158)
+++.
T Consensus 89 ~~a~ 92 (114)
T 2cpy_A 89 HVVT 92 (114)
T ss_dssp EEEC
T ss_pred EECC
Confidence 6553
No 160
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.21 E-value=2.2e-11 Score=114.91 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=63.6
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
.+++||||||+.+++++||++.|++||.|+++.+.. ++|||||+|.+.+||..|++.|+|..+. +|+|++
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 567999999999999999999999999999999864 4889999999999999999999998765 677764
No 161
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.8e-11 Score=107.59 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=63.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEE-Eec--CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFF-FFP--IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~-~~~--~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
..+++||||||+.+++++||+++|++||+|.++. +.. ..|.|||+|.+.++|..|++.|+|..+. +|+|+.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3578999999999999999999999999999994 654 4456999999999999999999998765 7888765
No 162
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=2.6e-11 Score=108.88 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=61.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe---cCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~---~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 640 (1158)
.++++||||||+.+++++||+++|+.|+.+.-+.-. ..||||||+|.+.+||..|++.|+|..+. +|+|+++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 468999999999999999999999999654433321 24799999999999999999999998765 88888653
No 163
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=114.51 Aligned_cols=62 Identities=24% Similarity=0.446 Sum_probs=55.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe---------cCCceEEEEecCHHHHHHHHHhh---cCCc
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---------PIKGFALVEYINIIDAIRAREYI---RNHF 630 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~---------~~rgfAFVeF~~i~DAv~A~~~L---~G~~ 630 (1158)
..+++||||||+.+++|+||+++|++||+|. +.+. ..||||||+|.+.++|.+|++.| +|+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~ 79 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKL 79 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcE
Confidence 4579999999999999999999999999999 5543 35899999999999999999999 6654
No 164
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=3.9e-11 Score=105.92 Aligned_cols=70 Identities=10% Similarity=0.056 Sum_probs=62.1
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
...++||||||+.+++++||++.|++| .|.+|.+.. .+|||||+|.+.+||..|++ |+|..+. +|+++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 357899999999999999999999999 999999864 48899999999999999999 9998765 666665
Q ss_pred c
Q 001097 639 V 639 (1158)
Q Consensus 639 ~ 639 (1158)
.
T Consensus 86 ~ 86 (91)
T 2dgw_A 86 S 86 (91)
T ss_dssp S
T ss_pred c
Confidence 4
No 165
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.19 E-value=4e-11 Score=118.18 Aligned_cols=74 Identities=28% Similarity=0.403 Sum_probs=68.3
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccC-CcceEEEec-CCceEEEEecCHHHHHHHHHhhcCCcee-----EEEEee
Q 001097 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW-----RVKFMD 638 (1158)
Q Consensus 566 v~~~S~~LWVGnL~~~vte~dL~~~F~~fG-pLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~-----RI~F~r 638 (1158)
+..+++.||||||+.++++++|+++|++|| .|.+|.+.+ .+|||||+|.+.+||..|++.|+|+.+. +|+|++
T Consensus 116 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 116 IFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 456899999999999999999999999999 999999976 9999999999999999999999998664 788887
Q ss_pred c
Q 001097 639 V 639 (1158)
Q Consensus 639 ~ 639 (1158)
+
T Consensus 196 ~ 196 (198)
T 1qm9_A 196 S 196 (198)
T ss_dssp C
T ss_pred c
Confidence 6
No 166
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=5.1e-11 Score=109.37 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=60.7
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001097 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1158)
Q Consensus 566 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 636 (1158)
--...++||||||+.+++|+||++.|+.||.+ +|++.. .||||||+|.+.+||.+|++ |+|+.+. +|..
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34567899999999999999999999999965 888753 58899999999999999995 7888765 5655
Q ss_pred eec
Q 001097 637 MDV 639 (1158)
Q Consensus 637 ~r~ 639 (1158)
+..
T Consensus 89 ~~~ 91 (102)
T 1wez_A 89 NST 91 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 544
No 167
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.19 E-value=1.6e-11 Score=104.27 Aligned_cols=59 Identities=20% Similarity=0.392 Sum_probs=53.5
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCce
Q 001097 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS 631 (1158)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~ 631 (1158)
+||||||+.+++++||++.|++||+|.++.+.. .||||||+|.+.++|.+|++. +|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~ 65 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV 65 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE
Confidence 589999999999999999999999999999853 589999999999999999995 66554
No 168
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.81 E-value=2.1e-12 Score=119.31 Aligned_cols=73 Identities=15% Similarity=0.239 Sum_probs=65.1
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcce--------EEEec------CCceEEEEecCHHHHHHHHHhhcCCcee-
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW- 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~--------V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~- 632 (1158)
.++++||||||+.+++++||+++|++||.|.+ |.+.. .||||||+|.+.++|..|++.|+|..+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 56899999999999999999999999999998 77653 4799999999999999999999998765
Q ss_pred ---EEEEeecc
Q 001097 633 ---RVKFMDVG 640 (1158)
Q Consensus 633 ---RI~F~r~~ 640 (1158)
+|+++++.
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 78888654
No 169
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.17 E-value=4.6e-11 Score=124.15 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=67.3
Q ss_pred ccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCC-ceEEEEecCHHHHHHHHHhhcCCcee-----EEEEe
Q 001097 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK-GFALVEYINIIDAIRAREYIRNHFSW-----RVKFM 637 (1158)
Q Consensus 564 ~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~r-gfAFVeF~~i~DAv~A~~~L~G~~~~-----RI~F~ 637 (1158)
+....++++||||||+.+++++||+++|++||.|.+|.+.+.+ |||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 201 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 201 LSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred ccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 3445678999999999999999999999999999999999866 99999999999999999999998664 67776
Q ss_pred e
Q 001097 638 D 638 (1158)
Q Consensus 638 r 638 (1158)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 4
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.17 E-value=4.3e-11 Score=118.35 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=66.6
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC------CceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 636 (1158)
...+++||||||+.+++++||+++|++||.|++|.+.+. +|||||+|.+.+||.+|++.|+|..+. +|+|
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 356799999999999999999999999999999999764 899999999999999999999998765 7888
Q ss_pred eec
Q 001097 637 MDV 639 (1158)
Q Consensus 637 ~r~ 639 (1158)
+.+
T Consensus 202 a~~ 204 (216)
T 2qfj_A 202 AVT 204 (216)
T ss_dssp CSS
T ss_pred ecC
Confidence 865
No 171
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.17 E-value=5.2e-11 Score=112.42 Aligned_cols=64 Identities=9% Similarity=0.183 Sum_probs=59.1
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC------CceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
.+++||||||+.+++++||+++|++||.|+.+.+.+. +|||||+|.+.++|.+|++.|+|..+.
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 4678999999999999999999999999999998753 799999999999999999999998653
No 172
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=2.4e-11 Score=113.92 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=59.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcce-EEEe-----cCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH-FFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~-V~~~-----~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
...++||||||+.+++++||+++|+.||.|.+ +.+. ..+|||||+|.+.+||..|++ |+|..+. +|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 45689999999999999999999999999987 3333 268999999999999999999 9998764 55544
No 173
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.16 E-value=6.7e-11 Score=118.77 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=66.4
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
..++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 46789999999999999999999999999999999964 5799999999999999999999998765 78887
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
..
T Consensus 165 ~~ 166 (177)
T 2f3j_A 165 AS 166 (177)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 174
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.16 E-value=6e-11 Score=121.18 Aligned_cols=75 Identities=28% Similarity=0.407 Sum_probs=68.8
Q ss_pred cccccCceEEeccCCCccCHHHHHHHhhccC-CcceEEEec-CCceEEEEecCHHHHHHHHHhhcCCcee-----EEEEe
Q 001097 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW-----RVKFM 637 (1158)
Q Consensus 565 dv~~~S~~LWVGnL~~~vte~dL~~~F~~fG-pLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~-----RI~F~ 637 (1158)
++..+++.||||||+.++++++|+++|++|| .|.+|.+.+ .+|||||+|.+.+||..|++.|+|..+. +|.|+
T Consensus 146 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 146 NIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp TCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred cCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 3567889999999999999999999999999 999999976 9999999999999999999999998654 88888
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
++
T Consensus 226 ~~ 227 (229)
T 2adc_A 226 KS 227 (229)
T ss_dssp SS
T ss_pred cC
Confidence 76
No 175
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.16 E-value=1.1e-11 Score=111.56 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=58.8
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHH---hhcCCceeEEEEe
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRARE---YIRNHFSWRVKFM 637 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~---~L~G~~~~RI~F~ 637 (1158)
.+++||||||+.+++++||+++|++||.|.+|.+.. .||||||+|.+.++|.+|++ .|+|+.+ +|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l-~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKL-KLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEETTEEC-EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeECCEEE-EEEEC
Confidence 468999999999999999999999999999999875 57999999999999999999 6666432 34444
No 176
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.15 E-value=4.5e-11 Score=114.22 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=62.1
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEecC------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
+++||||||+.+++++||++.|++||+|+++.+.+. +|||||+|.+.+||.+|++.|+|..+. +|+|+
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 899999999999999999999999999999999764 799999999999999999999998765 55543
No 177
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.14 E-value=6.1e-11 Score=115.80 Aligned_cols=72 Identities=22% Similarity=0.359 Sum_probs=66.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
..+++||||||+.+++++||+++|++||.|.++.+.+. +|||||+|.+.++|..|++.|+|..+. +|+|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56799999999999999999999999999999998764 899999999999999999999998765 78887
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
++
T Consensus 192 ~~ 193 (198)
T 2yh0_A 192 SV 193 (198)
T ss_dssp CC
T ss_pred CC
Confidence 66
No 178
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.13 E-value=4.8e-11 Score=124.22 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=62.2
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccC--CcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFG--PLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fG--pLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 636 (1158)
..++||||||+.++||+||+++|++|| .|.+|++.. .||||||+|.+.++|.+|++.|+|+.+. +|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 577999999999999999999999999 999999853 5799999999999999999999998764 6666
Q ss_pred eec
Q 001097 637 MDV 639 (1158)
Q Consensus 637 ~r~ 639 (1158)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 644
No 179
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.13 E-value=1e-10 Score=111.07 Aligned_cols=63 Identities=14% Similarity=0.260 Sum_probs=58.9
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC------CceEEEEecCHHHHHHHHHhhcCCce
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFS 631 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~ 631 (1158)
.+++|||+||+.++++++|+++|++||.|+.+.+.+. +|||||+|.+.+||.+|++.|+|+.+
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 156 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP 156 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe
Confidence 4689999999999999999999999999999998764 59999999999999999999999865
No 180
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.12 E-value=7.9e-11 Score=119.08 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=64.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
..+++||||||+.+++++||+++|++||.|+.+.+.+ .||||||+|.+.++|..|++.|+|..+. +|+++++
T Consensus 101 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 101 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 3567899999999999999999999999999999864 6899999999999999999999998765 6777643
No 181
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.12 E-value=7.4e-11 Score=110.48 Aligned_cols=64 Identities=14% Similarity=-0.031 Sum_probs=58.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCC---cceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGP---LEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGp---Le~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
...++||||||+.++||+||++.|+.||. |.+|++.. .||||||+|.+.+||.+|++ |+|+.+.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 86 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG 86 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC
Confidence 45789999999999999999999999999 89998863 58999999999999999999 9997664
No 182
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1.8e-10 Score=105.13 Aligned_cols=64 Identities=13% Similarity=-0.007 Sum_probs=57.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcce-EEEe-----cCCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH-FFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~-V~~~-----~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
...++||||||+.+++|+||++.|+.||.|.+ |.+. +.||||||+|.+.+||.+|++. +|+.+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~ 82 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG 82 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC
Confidence 45789999999999999999999999999987 7664 3689999999999999999998 887665
No 183
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.08 E-value=8.2e-11 Score=107.86 Aligned_cols=64 Identities=13% Similarity=0.010 Sum_probs=58.4
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCC---cceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGP---LEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGp---Le~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
...+.||||||+.++|++||++.|+.||. |.+|.+.. .||||||+|.+.+||.+|++ |+|..+.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG 80 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC
Confidence 46789999999999999999999999998 89999853 68899999999999999999 9997654
No 184
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.07 E-value=1.4e-10 Score=112.86 Aligned_cols=63 Identities=14% Similarity=-0.058 Sum_probs=57.7
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCC---cceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGP---LEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGp---Le~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
..++||||||+.++||+||++.|+.||. |++|++.. +||||||+|.+.+||.+|++ |+|+.+.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~ 113 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG 113 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC
Confidence 4689999999999999999999999999 88998863 58999999999999999999 9997664
No 185
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.07 E-value=1.2e-10 Score=110.74 Aligned_cols=71 Identities=14% Similarity=0.227 Sum_probs=62.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
.++++||||||+.+++++||++.|++||.|+++.+.. +||||||+|.+.++|.+|++ |+|..+. +|+|+
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 3578999999999999999999999999999999864 46899999999999999998 7876554 77777
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
++
T Consensus 164 ~p 165 (167)
T 2cjk_A 164 EP 165 (167)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 186
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.07 E-value=2.9e-10 Score=105.88 Aligned_cols=72 Identities=15% Similarity=0.247 Sum_probs=61.6
Q ss_pred ccCceEEeccCCC-----ccCHHHHHHHhhccCCcceEEEec-------CCceEEEEecCHHHHHHHHHhhcCCcee---
Q 001097 568 SASKQLWLGSFGP-----EASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW--- 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~-----~vte~dL~~~F~~fGpLe~V~~~~-------~rgfAFVeF~~i~DAv~A~~~L~G~~~~--- 632 (1158)
.+|+.|+|+||-. +.+++||+++|++||.|.+|++.. +||||||+|.+.+||.+|++.|+|+.+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 5789999999973 358999999999999999999863 4899999999999999999999998654
Q ss_pred -EEEEeec
Q 001097 633 -RVKFMDV 639 (1158)
Q Consensus 633 -RI~F~r~ 639 (1158)
+++|++.
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 6777653
No 187
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.06 E-value=1.9e-10 Score=117.53 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=61.0
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCc--ceEEEecC----CceEEEEecCHHHHHHHHHhhcCCce
Q 001097 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPL--EHFFFFPI----KGFALVEYINIIDAIRAREYIRNHFS 631 (1158)
Q Consensus 566 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpL--e~V~~~~~----rgfAFVeF~~i~DAv~A~~~L~G~~~ 631 (1158)
+..++++||||||+.+++++||+++|+.||.| .+|++++. +|||||+|.+.+||..|+..|+|..+
T Consensus 119 ~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~ 190 (205)
T 3tyt_A 119 IQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQM 190 (205)
T ss_dssp CCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred cCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCc
Confidence 46789999999999999999999999999999 89998864 58999999999999999999999754
No 188
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.06 E-value=1.7e-10 Score=130.80 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=66.1
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
.++++||||||+.++|+++|..+|++||.|..|.+.. .+|||||+|.+.++|..|++.|+|..+. +|+|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4678999999999999999999999999999999864 4899999999999999999999999875 78888
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
..
T Consensus 180 ~~ 181 (437)
T 3pgw_S 180 RG 181 (437)
T ss_pred CC
Confidence 64
No 189
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.04 E-value=3.2e-10 Score=110.57 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=61.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
..+++||||||+.+++++||+++|++||.|++|.+.. .+|||||+|.+.+||.+|++. +|..+. +|+++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3458999999999999999999999999999999875 379999999999999999986 566543 78888
Q ss_pred ecc
Q 001097 638 DVG 640 (1158)
Q Consensus 638 r~~ 640 (1158)
.+.
T Consensus 181 ~~k 183 (196)
T 1l3k_A 181 LSK 183 (196)
T ss_dssp C--
T ss_pred CCh
Confidence 653
No 190
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=5.8e-10 Score=103.19 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=62.6
Q ss_pred ccCceEEeccCCCcc-----------CHHHHHHHhhccCCcceEEEec--CCceEEEEecCHHHHHHHHHhhcCCcee--
Q 001097 568 SASKQLWLGSFGPEA-----------SEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFSW-- 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~v-----------te~dL~~~F~~fGpLe~V~~~~--~rgfAFVeF~~i~DAv~A~~~L~G~~~~-- 632 (1158)
++++.|+|.||-... +++||+++|++||+|.+|.+.. .||||||+|.+.+||.+|++.|+|..+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 578999999995443 3789999999999999998853 7999999999999999999999998764
Q ss_pred --EEEEeec
Q 001097 633 --RVKFMDV 639 (1158)
Q Consensus 633 --RI~F~r~ 639 (1158)
+|+|+++
T Consensus 93 ~l~v~~a~~ 101 (112)
T 2dit_A 93 QITAQAWDG 101 (112)
T ss_dssp ECEEEECCS
T ss_pred EEEEEEeCC
Confidence 8888865
No 191
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=2.3e-10 Score=107.17 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=61.6
Q ss_pred cccCce-EEeccCCCccCHHH----HHHHhhcc-CCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001097 567 FSASKQ-LWLGSFGPEASEAH----IRFQIDRF-GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1158)
Q Consensus 567 ~~~S~~-LWVGnL~~~vte~d----L~~~F~~f-GpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 636 (1158)
+.++.. ||||||+-++++++ |+++|++| |+|-+|+ .|||||.|.++++|.+|++.|||..+. ||.|
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 467888 99999999999988 66899999 5999993 399999999999999999999999775 9999
Q ss_pred eec
Q 001097 637 MDV 639 (1158)
Q Consensus 637 ~r~ 639 (1158)
+..
T Consensus 81 A~~ 83 (96)
T 2diu_A 81 TPK 83 (96)
T ss_dssp SCC
T ss_pred cCC
Confidence 865
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.03 E-value=1.9e-10 Score=110.74 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=62.5
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEe-cCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~-~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
.+++||||||+.+++++||+++|++||.|..+... ..+|||||+|.+.++|.+|++.|+|..+. +|+|+++
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 67899999999999999999999999999888211 38999999999999999999999998664 6777754
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.01 E-value=4.1e-10 Score=117.36 Aligned_cols=83 Identities=20% Similarity=0.266 Sum_probs=71.3
Q ss_pred ecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC-----CceEEEEecCHHHHHHHHHhhcC-Cc
Q 001097 557 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRN-HF 630 (1158)
Q Consensus 557 ~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~-----rgfAFVeF~~i~DAv~A~~~L~G-~~ 630 (1158)
++|-+.-.....++++||||||+.++|+++|+++|++||.|.+|.+... +|||||+|.+.+||..|++.|+| ..
T Consensus 83 i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 162 (261)
T 3sde_A 83 LKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAF 162 (261)
T ss_dssp ETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred ECCceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeE
Confidence 5666666777778999999999999999999999999999999998753 89999999999999999999954 33
Q ss_pred e-------eEEEEeec
Q 001097 631 S-------WRVKFMDV 639 (1158)
Q Consensus 631 ~-------~RI~F~r~ 639 (1158)
+ .+|++++.
T Consensus 163 ~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 163 LLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp ESSSSCCBCEEEECCC
T ss_pred EecCCCceEEEeeccc
Confidence 2 37787754
No 194
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.98 E-value=2.8e-10 Score=111.26 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=56.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
...++||||||+.++||+||++.|++|| +.+|++.. +||||||+|.+.+||.+|+ .|+|+.+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~ 111 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ 111 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC
Confidence 4578999999999999999999999999 66888753 6899999999999999999 78987765
No 195
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=6.8e-10 Score=104.13 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=56.9
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe-----cCCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~-----~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
...+.||||||+.+++|+||++.|+.| .|.+|.+. +.||||||+|.+.+||.+|+ .|+|+.+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~ 81 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI 81 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC
Confidence 346799999999999999999999999 89999985 36899999999999999999 69997664
No 196
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.97 E-value=1.1e-09 Score=105.51 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=83.3
Q ss_pred cCCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeecc------CCCCcccccccccccceEEEccCCCcchhHHHHHh
Q 001097 604 PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVG------LGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHE 675 (1158)
Q Consensus 604 ~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~------~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE 675 (1158)
..+|||||+|.+.++|..|++.++|.... .+.+.... ...............+.||||+++..+++|+|...
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 37899999999999999999998865322 11111100 00000111112246899999999999999999999
Q ss_pred hhcccccCCceee----cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 676 SYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 676 ~~kag~kgPv~f~----dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
|..++.+..+.+. ....++.+||+|.+.++|..|++.|+++..+
T Consensus 91 F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 138 (158)
T 2kn4_A 91 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 138 (158)
T ss_dssp HHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS
T ss_pred HHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 9887755555442 2456789999999999999999999997754
No 197
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=5.9e-10 Score=106.83 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=55.4
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCc----ceEEEe-----cCCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPL----EHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpL----e~V~~~-----~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
..++||||||+.++||+||++.|+.||+| ++|++. ++||||||+|.+.+||.+|++. +|+.+.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~ 93 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG 93 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC
Confidence 46899999999999999999999999986 688875 2689999999999999999996 775543
No 198
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.87 E-value=1.8e-09 Score=109.61 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=55.4
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcC
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRN 628 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G 628 (1158)
..++||||||+.++++++|++.|++||+|.+|++.+ .||||||+|.+.++|..|++.+++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~ 172 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ 172 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC
Confidence 468999999999999999999999999999999864 689999999999999999987654
No 199
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.84 E-value=3.3e-09 Score=102.42 Aligned_cols=62 Identities=13% Similarity=0.021 Sum_probs=54.0
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcc--eEEEec-----CCceEEEEecCHHHHHHHHHhhcCCce
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLE--HFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFS 631 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe--~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~ 631 (1158)
...+.||||||+.++||+||++.|+.| .|. +|.+.. +||||||+|.+.+||.+|++. +|+.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l 108 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERI 108 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEE
Confidence 457899999999999999999999999 565 888753 689999999999999999985 66544
No 200
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.83 E-value=2e-09 Score=103.46 Aligned_cols=115 Identities=18% Similarity=0.157 Sum_probs=85.1
Q ss_pred cCCceEEEEecCHHHHHHHHHhh-cCCce---eEEEEeeccC-------CCCcccccccccccceEEEccCCCcchhHHH
Q 001097 604 PIKGFALVEYINIIDAIRAREYI-RNHFS---WRVKFMDVGL-------GTKGVINGVAVGSCFHVYVGNIPNQWAKDEI 672 (1158)
Q Consensus 604 ~~rgfAFVeF~~i~DAv~A~~~L-~G~~~---~RI~F~r~~~-------g~rg~~~Gva~~~s~~LwVG~Iss~~~kEEL 672 (1158)
.-+|+++|+|.+.++|.+|++.| +|+.+ ++++++.... .............++.||||+++..++.++|
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCCEEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCCceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 35899999999999999999999 66654 4666553310 0000011122346899999999999999999
Q ss_pred HHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 673 LHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 673 fsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..-|..+|.+..+.+. ...++.+||+|++.++|..|++.|+++...
T Consensus 91 ~~~F~~~G~i~~v~i~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 136 (150)
T 2i2y_A 91 ERAFGYYGPLRSVWVA-RNPPGFAFVEFEDPRDAADAVRELDGRTLC 136 (150)
T ss_dssp HHHHHHHSCEEEEEEC-SSSCSEEEEEESSHHHHHHHHHHHSSSCSS
T ss_pred HHHHHhhCCEEEEEEe-eCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 9999876655444432 125899999999999999999999987643
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.83 E-value=5.6e-09 Score=97.08 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=60.1
Q ss_pred ccCceEEeccCCCc----------cCHHHHHHHhhccCCcceEEEec--------CCceEEEEecCHHHHHHHHHhhcCC
Q 001097 568 SASKQLWLGSFGPE----------ASEAHIRFQIDRFGPLEHFFFFP--------IKGFALVEYINIIDAIRAREYIRNH 629 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~----------vte~dL~~~F~~fGpLe~V~~~~--------~rgfAFVeF~~i~DAv~A~~~L~G~ 629 (1158)
+||+-|-|-|+-.. ..++||+++|++||+|.+|++.+ ++|||||+|.+.++|.+|++.|+|+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46888888887432 24579999999999999999864 4799999999999999999999998
Q ss_pred cee----EEEEeec
Q 001097 630 FSW----RVKFMDV 639 (1158)
Q Consensus 630 ~~~----RI~F~r~ 639 (1158)
.+. ++.|.+.
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 764 7777754
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=1.2e-08 Score=94.79 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=53.9
Q ss_pred CccCHHHHHHHhhccCCcceEEEec-CCceEEEEecCHHHHHHHHHhhcCC--ceeEEEEeecc
Q 001097 580 PEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNH--FSWRVKFMDVG 640 (1158)
Q Consensus 580 ~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~--~~~RI~F~r~~ 640 (1158)
++++|+||+++|++||.|.+|++.. .||||||+|.+.+||..|++.++|. +..+|+|++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEccCC
Confidence 6799999999999999999999974 9999999999999999999998874 23488888653
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.78 E-value=8.7e-09 Score=98.24 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=60.5
Q ss_pred ccCceEEeccCCCc-----cCHHHHHHHhhccCCcceEEEecC----------CceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 568 SASKQLWLGSFGPE-----ASEAHIRFQIDRFGPLEHFFFFPI----------KGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~-----vte~dL~~~F~~fGpLe~V~~~~~----------rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
++|+.|.|.|+-.. --++||+++|++||+|.+|++.++ +|||||+|.+.++|.+|++.|+|+...
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 37899999998532 347999999999999999998652 489999999999999999999998654
Q ss_pred ----EEEEeec
Q 001097 633 ----RVKFMDV 639 (1158)
Q Consensus 633 ----RI~F~r~ 639 (1158)
+++|.+.
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 6777643
No 204
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.74 E-value=3.7e-09 Score=98.00 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=50.9
Q ss_pred eccCCCccCHHHHHHHh------------hccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 575 LGSFGPEASEAHIRFQI------------DRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 575 VGnL~~~vte~dL~~~F------------~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
+++|+.++++++|++.| ++||+|.+|++.+ +||||||+|.+.+||.+|++.|+|+.+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 67888888888877766 9999999999975 4899999999999999999999998754
No 205
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.2e-08 Score=100.75 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=58.0
Q ss_pred ceEEeccC----CCccCHHHHHHHhhccCCcceEEEe------cCCceEEEEecC----HHH----HHHHHH--hhcCCc
Q 001097 571 KQLWLGSF----GPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYIN----IID----AIRARE--YIRNHF 630 (1158)
Q Consensus 571 ~~LWVGnL----~~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~----i~D----Av~A~~--~L~G~~ 630 (1158)
.+|||||| +..++|.+|+..|+.||+|.++.+. ++||||||+|.| +.+ |..|++ .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999985 479999999997 544 788888 788887
Q ss_pred ee----EEEEeec
Q 001097 631 SW----RVKFMDV 639 (1158)
Q Consensus 631 ~~----RI~F~r~ 639 (1158)
+- ||++-|-
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 64 6666654
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.71 E-value=3.4e-08 Score=93.81 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=58.4
Q ss_pred cCceEEeccCCCc----------cCHHHHHHHhhccCCcceEEEec--CCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001097 569 ASKQLWLGSFGPE----------ASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1158)
Q Consensus 569 ~S~~LWVGnL~~~----------vte~dL~~~F~~fGpLe~V~~~~--~rgfAFVeF~~i~DAv~A~~~L~G~~~~---- 632 (1158)
+|+-|-+-|+-.. -.++||+++|++||.|.+|++.+ +||||||+|.+.+||.+|++.|+|+.+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 5666777666443 24679999999999999999976 5899999999999999999999998654
Q ss_pred EEEEeec
Q 001097 633 RVKFMDV 639 (1158)
Q Consensus 633 RI~F~r~ 639 (1158)
+++|.+.
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 6777743
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=2.7e-07 Score=89.36 Aligned_cols=62 Identities=6% Similarity=0.011 Sum_probs=58.7
Q ss_pred ccccCceEEeccCCCc-cCHHHHHHHhhccCCcceEEEecCCceEEEEecC-HHHHHHHHHhhc
Q 001097 566 IFSASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYIN-IIDAIRAREYIR 627 (1158)
Q Consensus 566 v~~~S~~LWVGnL~~~-vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~-i~DAv~A~~~L~ 627 (1158)
.+.+.+-||||||+.+ ++++||+++|..||+|..|++.+++.+|||.|.+ ..+|.+|++.|+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTT
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhh
Confidence 3567899999999999 9999999999999999999999999999999999 899999999995
No 208
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.33 E-value=4.3e-07 Score=87.16 Aligned_cols=103 Identities=12% Similarity=0.057 Sum_probs=57.1
Q ss_pred eEEEEecCHHHHHHHHHhhcCCcee-E--EEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCC
Q 001097 608 FALVEYINIIDAIRAREYIRNHFSW-R--VKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP 684 (1158)
Q Consensus 608 fAFVeF~~i~DAv~A~~~L~G~~~~-R--I~F~r~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgP 684 (1158)
++|.+|.|..=|..|+..|+|.... + +.+.++ .....+++.||||+++..++.++|...|..++.+..
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~~~~~---------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 76 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRP---------PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD 76 (135)
T ss_dssp -----------------------------CCSCCS---------CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCCCcCCC---------CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE
Confidence 4555666666666666666664321 1 111111 011236889999999999999999999998776655
Q ss_pred ceee----cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 685 YMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 685 v~f~----dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+.+. ....++.++|+|++.++|..|++.|+++...
T Consensus 77 v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~ 115 (135)
T 2lea_A 77 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 115 (135)
T ss_dssp EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS
T ss_pred EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 5442 2345779999999999999999999987654
No 209
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.25 E-value=7.5e-07 Score=87.40 Aligned_cols=109 Identities=14% Similarity=0.046 Sum_probs=54.4
Q ss_pred EEecCHHHHHHHHHhhcCCcee------EEEEeecc-CCCCccc----------ccccccccceEEEccCCCcchhHHHH
Q 001097 611 VEYINIIDAIRAREYIRNHFSW------RVKFMDVG-LGTKGVI----------NGVAVGSCFHVYVGNIPNQWAKDEIL 673 (1158)
Q Consensus 611 VeF~~i~DAv~A~~~L~G~~~~------RI~F~r~~-~g~rg~~----------~Gva~~~s~~LwVG~Iss~~~kEELf 673 (1158)
++|++.+||.+|+..|+++... +.+..... .+....+ ......+++.||||+++..++.++|.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7999999999999999997654 12211110 0000000 01112357789999999999999999
Q ss_pred HhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 674 HESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 674 sE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.-|..+|.+..+.+. + ...++++||+|.+.++|..|++.|+++...
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 140 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 140 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 999887655554432 2 234789999999999999999999987654
No 210
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=2.5e-06 Score=75.26 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=58.5
Q ss_pred cccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 647 INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 647 ~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+.+....+++.||||+++..++.++|...|..++.+..+.+. + ...++.++|||++.++|..|++.|+++...
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 8 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp CCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 444445579999999999999999999999987765555442 2 345679999999999999999999987643
No 211
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.16 E-value=3.8e-07 Score=103.63 Aligned_cols=129 Identities=9% Similarity=0.041 Sum_probs=88.5
Q ss_pred HHHHHhhccCCcceEEEe--------cCCceE-----EEEecCHHHHHHHHHhhcCCcee-----------------EEE
Q 001097 586 HIRFQIDRFGPLEHFFFF--------PIKGFA-----LVEYINIIDAIRAREYIRNHFSW-----------------RVK 635 (1158)
Q Consensus 586 dL~~~F~~fGpLe~V~~~--------~~rgfA-----FVeF~~i~DAv~A~~~L~G~~~~-----------------RI~ 635 (1158)
+|.++|..+|||..+... ...+|+ |++|.+..+|..|+..+...... .+.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 478999999999887211 123455 89998877766555443322110 111
Q ss_pred EeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee----cCCCCCeeeccccCHHHHHHHHH
Q 001097 636 FMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMA 711 (1158)
Q Consensus 636 F~r~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~----dlseK~~LpVEF~t~edA~~Am~ 711 (1158)
...+... ..+...+++.|||||++..++.++|...|.++|.+..+.+. ....++++||+|.+.++|..|++
T Consensus 88 ~~~p~~~-----~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 162 (437)
T 3pgw_S 88 MWDPHND-----PNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162 (437)
T ss_pred hcCCccc-----ccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHH
Confidence 1111100 01112467899999999999999999999988766666542 23458899999999999999999
Q ss_pred HHhhhccc
Q 001097 712 HLRQHRKS 719 (1158)
Q Consensus 712 ~l~~~r~~ 719 (1158)
.|+++...
T Consensus 163 ~lng~~i~ 170 (437)
T 3pgw_S 163 HADGKKID 170 (437)
T ss_pred HcCCCEEC
Confidence 99987654
No 212
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.11 E-value=4e-06 Score=74.88 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=55.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++.||||+++..+++++|...|..++.+..+.+ ...++.++|||++.++|..|++.|+++...
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDH--VKGDSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEE--CSSSCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE--eCCCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 347899999999999999999999987665544433 345899999999999999999999987643
No 213
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.11 E-value=2.6e-06 Score=73.67 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=56.0
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++.||||+++..++.++|...|..++.+..+.+ .+ ...++.++|||++.++|..|++.|+++...
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 75 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 75 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 457899999999999999999999998775554443 12 335789999999999999999999987654
No 214
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.05 E-value=6.6e-06 Score=73.71 Aligned_cols=65 Identities=18% Similarity=0.151 Sum_probs=55.8
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..+++++|..-|..++.+..+. ...+++.++|||++.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~ 77 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVF--IHKDKGFGFIRLETRTLAEIAKVELDNMPLR 77 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEE--EETTTTEEEEECSSSHHHHHHHHHHTTCCBT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEE--EecCCCEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 4789999999999999999999999877555444 3466999999999999999999999987654
No 215
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.05 E-value=7.8e-06 Score=74.42 Aligned_cols=68 Identities=19% Similarity=0.183 Sum_probs=56.8
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++.||||+++..+++|+|..-|..++.+..+.+. +-..++.+||||++.++|..|++.|+++...
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 87 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD 87 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3478999999999999999999999987766555542 3445789999999999999999999987654
No 216
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.04 E-value=5.9e-06 Score=72.82 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=54.0
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|..-|..++.+..+.+. ++.++|||++.++|..|++.|+++...
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~ 68 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLH 68 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccC
Confidence 478999999999999999999999976655544443 899999999999999999999986544
No 217
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.03 E-value=5.3e-06 Score=84.42 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=50.4
Q ss_pred cCHHHHHHHhhccCCcceEEEe----------cCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 582 ASEAHIRFQIDRFGPLEHFFFF----------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 582 vte~dL~~~F~~fGpLe~V~~~----------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
-.++||.++|++||.|.+|.+. +.+||+||+|.+.++|.+|++.|+|+... ++.|.+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3678999999999999999996 56899999999999999999999998654 677764
No 218
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.03 E-value=7.4e-06 Score=76.10 Aligned_cols=63 Identities=13% Similarity=0.059 Sum_probs=53.6
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
.+++.||||+++..+++++|...|..+|.+..+. ....|+.+||||++.++|..|++.|+++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~--i~~~kg~aFVef~~~~~A~~Ai~~l~~~~ 75 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVM--MMPFKRQALVEFENIDSAKECVTFAADVP 75 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEE--EETTTTEEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE--EECCCCEEEEEECCHHHHHHHHHHhccCC
Confidence 4799999999999999999999998766555443 34569999999999999999999998753
No 219
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.01 E-value=1.2e-05 Score=69.91 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=55.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|..-|..++.+..+.+. + ...++.++|+|++.++|..|++.|+++...
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 368999999999999999999988877655554432 2 345789999999999999999999998765
No 220
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.01 E-value=6.1e-06 Score=73.53 Aligned_cols=66 Identities=24% Similarity=0.300 Sum_probs=55.1
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+++.||||+++..++.++|..-|..+|.+..+.+. + ...++.++|||++.++|..|++.|+++..+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 70 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG 70 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 57899999999999999999999987755555442 2 344789999999999999999999997655
No 221
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.00 E-value=8.1e-06 Score=73.21 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=55.3
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.++.||||+++..++.|+|..-|..+|.+..+.+ ...++.+||+|++.++|..|++.|+++...
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~--~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKH--YPEKGCCFIKYDTHEQAAVCIVALANFPFQ 89 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEE--ETTTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEE--ecCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4789999999999999999999998766555543 368999999999999999999999987654
No 222
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=7.2e-06 Score=72.54 Aligned_cols=67 Identities=9% Similarity=0.139 Sum_probs=56.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCc-eee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv-~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..+++++|..-|..++.+..+ .+. + ...++.+||||++.++|..|++.|+++...
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC 74 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 368999999999999999999999988876666 442 2 345789999999999999999999987654
No 223
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.99 E-value=8.1e-06 Score=73.14 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=57.5
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++.||||+++..++.++|...|..++.+..+.+ .+ ...++.+||||++.++|..|++.|+++...
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 80 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 347999999999999999999999998876666654 22 346789999999999999999999987655
No 224
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=1.3e-05 Score=71.65 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=56.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..++.||||+++..++.++|...|..++.+. +.+.....++.+||||++.+||..|++.|+++...
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLG 82 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSS
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3589999999999999999999999887665 44444477899999999999999999999987644
No 225
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.98 E-value=7.7e-06 Score=76.64 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=53.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhh
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQH 716 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~ 716 (1158)
.+++.||||++|..++++||..-|..+|.+..+. .+..|+.+||||++.++|.+|++.|++.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~--i~~~kg~AFVef~~~~~A~~Av~~ln~~ 80 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVV--VMPKKRQALVEFEDVLGACNAVNYAADN 80 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEE--EETTTTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEE--EEcCCCEEEEEECCHHHHHHHHHHhcCC
Confidence 4899999999999999999999888765544433 3567999999999999999999999986
No 226
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.98 E-value=5.2e-06 Score=80.85 Aligned_cols=107 Identities=9% Similarity=0.078 Sum_probs=57.2
Q ss_pred CceEEEEecCHHHHHHHHHhhcCCceeEEEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccc---c
Q 001097 606 KGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVY---K 682 (1158)
Q Consensus 606 rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~F~r~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~---k 682 (1158)
+||.|-+|..++.++-....+.... ...+.|..+.+.+-.....+.||||+++..+++|+|..-|..++. +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~------gg~~~g~g~~~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v 74 (136)
T 2hgl_A 1 MGSSHHHHHHSSGLVPRGSHMASMT------GGQQMGRGSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGA 74 (136)
T ss_dssp ----------------------------------------CCSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSS
T ss_pred CccccccccchHHHHhhccCCCccc------CCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCce
Confidence 3678889999998888877776632 111112212222323346899999999999999999999998887 4
Q ss_pred CCceee-c--CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 683 GPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 683 gPv~f~-d--lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+.+. + ...++.+||||++.+||..|++ |+++..+
T Consensus 75 ~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~ 113 (136)
T 2hgl_A 75 AGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG 113 (136)
T ss_dssp TTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS
T ss_pred eEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC
Confidence 455442 3 4557899999999999999999 9887654
No 227
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.97 E-value=7.8e-06 Score=72.90 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=55.9
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee----cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~----dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++.||||+++..++.++|...|..++.+..+.+. ....++.+||+|++.++|..|++.|+++...
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ 76 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3478999999999999999999999987655544432 2345689999999999999999999987654
No 228
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.97 E-value=6.9e-06 Score=74.23 Aligned_cols=64 Identities=11% Similarity=0.103 Sum_probs=53.5
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++.||||+++..++.++|..-|..++.+..+.+. ++.+||||++.++|..|++.|+++...
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~ 71 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLE 71 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccC
Confidence 3478999999999999999999999876654444332 679999999999999999999987654
No 229
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.97 E-value=1.4e-05 Score=71.85 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=55.9
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c-CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D-LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d-lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++.||||+++..++.++|..-|..++.+..+.+. + -..++.+||+|++.++|..|++.|+++...
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE 81 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3478999999999999999999999987655555442 1 224789999999999999999999987654
No 230
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.96 E-value=8.8e-06 Score=71.70 Aligned_cols=68 Identities=10% Similarity=-0.014 Sum_probs=56.2
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++.||||+++..+++++|...|..++.+..+.+. + ...++.++|||++.++|..|++.|+++...
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 83 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3479999999999999999999999987766555442 2 344678999999999999999999987654
No 231
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.96 E-value=9.6e-06 Score=75.66 Aligned_cols=63 Identities=13% Similarity=0.035 Sum_probs=53.1
Q ss_pred cccceEEEccCCC-cchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 653 GSCFHVYVGNIPN-QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 653 ~~s~~LwVG~Iss-~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
.+++.||||+++. .++++||..-|..+|.+..+. .+.+++.+||||++.+||..|++.|++..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~--i~~~kg~aFVef~~~~~A~~Ai~~l~~~~ 76 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHL--ILNKINEAFIEMATTEDAQAAVDYYTTTP 76 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEE--ECSSSSCEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEE--EEcCCCEEEEEECCHHHHHHHHHHHcCCC
Confidence 3799999999999 999999998888665544443 45678999999999999999999999753
No 232
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=9.4e-06 Score=74.10 Aligned_cols=67 Identities=13% Similarity=0.000 Sum_probs=55.1
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d--lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|..-|..++.+..+.+. + ...++.+||||++.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF 82 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 378999999999999999999999987755554432 2 233679999999999999999999987655
No 233
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.95 E-value=9.7e-06 Score=74.91 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=55.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..+++++|...|..+|.+..+.+. ++.++|||++.++|..|++.|+++..+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFA 91 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 468999999999999999999999987766655544 899999999999999999999997754
No 234
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.95 E-value=1.3e-05 Score=72.16 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=55.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c-CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D-LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d-lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|..-|..++.+..+.+. + -..++.+||||++.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL 81 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC
Confidence 478999999999999999999999887765555442 2 235789999999999999999999987654
No 235
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.95 E-value=8e-06 Score=74.70 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=56.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCC----ceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP----YMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgP----v~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.|+|..-|..++.+.. +.......++.+||||++.++|..|++.|+++...
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 93 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY 93 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 36899999999999999999999998886633 23334667899999999999999999999987654
No 236
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=1.2e-05 Score=70.89 Aligned_cols=67 Identities=16% Similarity=0.142 Sum_probs=55.6
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..+++++|..-|..++.+..+.+. + ...++.++|||++.++|..|++.|+++...
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA 73 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 368999999999999999999999987765555442 2 335679999999999999999999987654
No 237
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.94 E-value=1.1e-05 Score=72.21 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=53.8
Q ss_pred cccceEEEccCCC-cchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPN-QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss-~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++. .++.++|...|..++.+..+.+ .++.++|+|++.++|..|++.|+++...
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIECESQEMNF 71 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE----ETTEEEEEESCHHHHHHHHHHHTCSSCB
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 3789999999998 9999999999998766555554 3899999999999999999999987654
No 238
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.94 E-value=9.8e-06 Score=74.27 Aligned_cols=67 Identities=18% Similarity=0.153 Sum_probs=57.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|...|..+|.+..+.+ .+...++.++|+|.+.++|..|++.|+++...
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 73 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS 73 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 36899999999999999999999998776665544 35666899999999999999999999997754
No 239
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.93 E-value=1.2e-05 Score=72.18 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=53.9
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++.||||+++..++.|+|..-|..++.+.-+.......++.+||||++.++|..|++.|+++...
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 79 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 34799999999999999999999888765431111113456889999999999999999999987654
No 240
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.93 E-value=1.9e-05 Score=72.11 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=56.3
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccC--------Ccee-ec---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKG--------PYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kg--------Pv~f-~d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
...++.||||+++..+++++|...|..++.+. .+.+ .+ ...++.+||+|++.++|..|++.|+++...
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45789999999999999999999999877665 3433 22 344789999999999999999999997655
No 241
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.92 E-value=7.7e-06 Score=70.96 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=54.2
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|..-|..++.+..+.+. + ...++.++|||++.++|..|++.|+++...
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 74 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 368899999999999999999999987765555442 2 334679999999999999999999987644
No 242
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.92 E-value=7.6e-06 Score=72.96 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=56.6
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccC-Cceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKG-PYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kg-Pv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++.||||+++..+++|+|...|..++.+. .+.+. + ...++.++|||++.++|..|++.|+++...
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP 78 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 34799999999999999999999999877666 55442 2 244579999999999999999999997755
No 243
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.92 E-value=1.2e-05 Score=71.13 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=53.9
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|..-|..++.+..+.+. ++.++|+|++.++|..|++.|+++...
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~ 70 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTEFQ 70 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHTTEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 468999999999999999999999987655555432 569999999999999999999987654
No 244
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.91 E-value=1.3e-05 Score=70.80 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=53.6
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccc-cCCceeecCCCCCeeeccccCHHHHHHHHHHHhh-hccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVY-KGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ-HRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~-kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~-~r~~ 719 (1158)
..++.||||+++..++.|+|...|..++. +..+.+ ..++.+||||++.++|..|++.|++ +...
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 71 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL---LKSGYAFVDYPDQNWAIRAIETLSGKVELH 71 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE---EETTEEEECCSCHHHHHHHHHHHTTTCEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE---cCCCEEEEEECCHHHHHHHHHHccCCeeEC
Confidence 46899999999999999999999987765 333333 4689999999999999999999998 5443
No 245
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.91 E-value=9.2e-06 Score=73.08 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=55.1
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..+++++|...|..++.+..+.+. + ...++.+||||++.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD 83 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 378999999999999999999999887655555442 2 234568999999999999999999987654
No 246
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.90 E-value=1e-05 Score=70.21 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=54.3
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-cC----CCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-dl----seK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.++.||||+++..++.++|...|..+|.+..+.+. +- ..++.++|+|++.++|..|++.|+++..+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID 73 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC
Confidence 36889999999999999999999987655544432 21 16889999999999999999999997754
No 247
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.89 E-value=1.2e-05 Score=70.60 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=56.3
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee--cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT--DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~--dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++.||||+++..++.++|..-|..++.+..+.+. ....++.++|+|++.++|..|++.|+++...
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 74 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS 74 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3478999999999999999999999987755555443 2335789999999999999999999987755
No 248
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.89 E-value=1.3e-05 Score=72.07 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=55.8
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c-CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D-LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d-lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|...|..++.+..+.+. + ...++.+||+|++.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 81 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 379999999999999999999999987765555443 2 345789999999999999999999997754
No 249
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.89 E-value=1.3e-05 Score=72.46 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=53.5
Q ss_pred cccceEEEccCCC-cchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPN-QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss-~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++. .+++++|...|..+|.+..+.+ .++.+||||++.++|..|++.|+++...
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4799999999998 9999999999987665444443 3899999999999999999999987653
No 250
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.89 E-value=1.5e-05 Score=74.70 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=56.2
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+.+.||||+++..+++++|...|..++.+..+.+. + ...++.+||+|++.++|..|++.|+++...
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 131 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 131 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3479999999999999999999999987755555441 2 346889999999999999999999987643
No 251
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.88 E-value=1.9e-05 Score=71.21 Aligned_cols=67 Identities=19% Similarity=0.120 Sum_probs=54.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-----cCCCCCeeeccccCHHHHHHHHHHH-hhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-----DLSCEGALLMEFRTPEEATTAMAHL-RQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-----dlseK~~LpVEF~t~edA~~Am~~l-~~~r~~ 719 (1158)
.+++.||||+++..++.++|..-|..++.+..+.+. ....++.+||+|++.++|..|++.| +++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 378999999999999999999999977654444331 2234789999999999999999999 776644
No 252
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.88 E-value=2.1e-05 Score=70.45 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=56.5
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++.||||+++..++.++|...|..++.+..+.+. + ...++.+||||++.++|..|++.|+++...
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD 80 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3478999999999999999999999987766655542 2 235679999999999999999999987654
No 253
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.88 E-value=1.1e-05 Score=71.14 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=53.0
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|..-|..++.+..+.+. ++.++|+|++.++|..|++.|+++...
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~ 69 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLNGKEVK 69 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 368999999999999999999999876654444432 669999999999999999999987654
No 254
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.88 E-value=1.5e-05 Score=71.90 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=56.4
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhcc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
..+++.||||+++..++.++|..-|..++.+..+.+. + ...++.+||+|++.++|..|++.|+++..
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 3478999999999999999999999988766665442 2 34678999999999999999999999763
No 255
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=1.6e-05 Score=71.15 Aligned_cols=67 Identities=10% Similarity=0.122 Sum_probs=55.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d--lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.|+|..-|..++.+..+.+. + ...++.++|||++.++|..|++.|+++...
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 84 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK 84 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 468999999999999999999999987765555442 2 334589999999999999999999987654
No 256
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.86 E-value=1.5e-05 Score=72.99 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=55.6
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|...|..++.+..+.+. + ...++.+||+|++.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 83 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 478999999999999999999999987766555442 2 233679999999999999999999987654
No 257
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.86 E-value=1.4e-05 Score=73.95 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=52.5
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhh
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~ 715 (1158)
..+++.||||+++..++.++|...|..+|.+..+. ...+|+.+||||++.++|..|++.|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~--i~~~kg~aFVef~~~~~A~~Ai~~l~~ 73 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNIL--MLKGKNQAFLELATEEAAITMVNYYSA 73 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEE--EETTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--EECCCCEEEEEECCHHHHHHHHHHhcc
Confidence 34899999999999999999999888766554443 345699999999999999999998875
No 258
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.86 E-value=1.4e-05 Score=76.03 Aligned_cols=63 Identities=14% Similarity=0.243 Sum_probs=54.1
Q ss_pred cccceEEEccCCCc-chhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 653 GSCFHVYVGNIPNQ-WAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~-~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
.+++.||||+++.. ++.++|...|..+|.+..+.+ +..++.+||||++.+||..|+++|++..
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i--~~~kg~aFVef~~~~~A~~Ai~~l~~~~ 86 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL--MRMKSQAFIEMETREDAMAMVDHCLKKA 86 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE--ETTTTEEEEECSSHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE--ecCCCEEEEEECCHHHHHHHHHHhccCC
Confidence 37999999999998 999999999987776655544 4679999999999999999999998743
No 259
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.86 E-value=1.5e-05 Score=70.33 Aligned_cols=67 Identities=22% Similarity=0.172 Sum_probs=54.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||++|..+++++|..-|..++.+..+.+ .+ ...++.++|||++.+||..|++.|+++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 35799999999999999999999998876665533 22 335678999999999999999999987654
No 260
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.86 E-value=1.3e-05 Score=68.99 Aligned_cols=65 Identities=17% Similarity=0.232 Sum_probs=53.3
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 655 s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+..||||++|..++.++|...|..+|....+.+. + ...++.++|+|++.++|..|++.|+++..+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 69 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN 69 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC
Confidence 4689999999999999999999987655554432 2 334788999999999999999999987654
No 261
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.85 E-value=8.1e-06 Score=72.65 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=55.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-cC------CCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DL------SCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-dl------seK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|..-|..++.+..+.+. +- ..++.++|||.+.++|..|++.|+++...
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD 76 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 368999999999999999999999987766555443 21 34679999999999999999999987655
No 262
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.85 E-value=8.4e-06 Score=78.03 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=55.2
Q ss_pred cccceEEE--ccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhcc
Q 001097 653 GSCFHVYV--GNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 653 ~~s~~LwV--G~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
.+++.||| |+++..+++|+|...|..+|.+..+.+ ..+|+++||||++.+||..|++.|+++..
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i--~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM--PPNKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC--CTTCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 37899999 889999999999999998775544433 45799999999999999999999999864
No 263
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.85 E-value=1.4e-05 Score=70.58 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=55.7
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d--lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++.||||+++..++.++|..-|..++.+..+.+. + ...++.++|||++.++|..|++.|+++...
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY 83 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3478999999999999999999999987755555442 2 234679999999999999999999987654
No 264
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.85 E-value=1.7e-05 Score=76.28 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=53.8
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhh
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQH 716 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~ 716 (1158)
.+++.||||+++..+++++|...|..+|.+..+.+ +.+|+.+||||++.++|..|++.|++.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i--~~~kG~AFVeF~~~e~A~~Ai~~l~~~ 90 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM--LKGKNQAFIEMNTEEAANTMVNYYTSV 90 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEE--EGGGTEEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--eCCCCEEEEEECCHHHHHHHHHHhccC
Confidence 47999999999999999999999998776665554 345899999999999999999999864
No 265
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.85 E-value=1.4e-05 Score=71.62 Aligned_cols=65 Identities=20% Similarity=0.163 Sum_probs=53.2
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|...|..++. +.+.-..+ .++.+||||++.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~-g~v~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKP-GAVERVKK-IRDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTST-TCEEEEEE-CSSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCC-cceEEEEE-eCCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 47899999999999999999999998733 44422222 3789999999999999999999987654
No 266
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.85 E-value=9.8e-06 Score=70.25 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=52.1
Q ss_pred cceEEEccCCCcc------hhHHHHHhhhcccccCCceee--cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 655 CFHVYVGNIPNQW------AKDEILHESYKVVYKGPYMVT--DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 655 s~~LwVG~Iss~~------~kEELfsE~~kag~kgPv~f~--dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
++.||||++|..+ ++++|...|.++|.+..+.+. ....++.++|||++.++|..|++.|+++...
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 73 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 73 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC
Confidence 4789999999988 678898888876655444432 2355799999999999999999999987654
No 267
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.84 E-value=1.6e-05 Score=73.92 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=55.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee----cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~----dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|...|..++.+..+.+. ....++.+||+|.+.++|..|++.|+++...
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 368899999999999999999999987655544432 2334889999999999999999999997655
No 268
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.84 E-value=1.9e-05 Score=70.58 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=55.0
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++.||||+++..+++++|..-|..++.+..+.+. + ...++.+||+|++.++|..|++ |+++...
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 77 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM 77 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC
Confidence 3478999999999999999999999987755555442 2 3467899999999999999998 8887654
No 269
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.84 E-value=1.2e-05 Score=73.28 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=53.7
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 655 s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
...||||++|..++.|+|..-|..+|.+..+.+. + ...++.++|+|++.+||..|++.|+++..+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 87 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ 87 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4579999999999999999999987765555442 2 345678999999999999999999987754
No 270
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=2e-05 Score=70.89 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=55.1
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee----cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~----dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|...|..++.+..+.+. ....++.+||||++.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY 83 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 378999999999999999999999987655444331 2345679999999999999999999987654
No 271
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.84 E-value=1.9e-05 Score=71.81 Aligned_cols=67 Identities=19% Similarity=0.152 Sum_probs=55.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|..-|..+|.+..+.+. + ...++.+||||.+.++|..|++.|+++...
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 94 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 94 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 368899999999999999999999987755555442 2 344789999999999999999999997654
No 272
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.84 E-value=9e-06 Score=72.05 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=53.1
Q ss_pred cccceEEEccCCCcchhHHHH----HhhhcccccCCceee-cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEIL----HESYKVVYKGPYMVT-DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELf----sE~~kag~kgPv~f~-dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|. ..|..+|.+..+.+. ....++.++|||++.++|..|++.|+++...
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 77 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 378999999999999999988 777765544333321 2346789999999999999999999997654
No 273
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=9.6e-06 Score=72.74 Aligned_cols=67 Identities=25% Similarity=0.259 Sum_probs=56.2
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|...|..+|.+..+.+. + ...++.++|+|.+.++|..|++.|+++...
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS 76 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 368999999999999999999999988766665543 2 334789999999999999999999987754
No 274
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.83 E-value=1.2e-05 Score=74.62 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=53.9
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCceee-c-CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D-LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 655 s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d-lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+..||||+++..+++|+|..-|..+|.+..+.+. + -..++++||+|++.|+|..|++.|+++...
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~ 71 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 71 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC
Confidence 5679999999999999999999987766555442 2 234678999999999999999999997655
No 275
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.83 E-value=1.6e-05 Score=73.57 Aligned_cols=64 Identities=22% Similarity=0.152 Sum_probs=54.4
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.++.||||+++..++.++|...|..+|.+..+. ....++.+||||++.++|..|++.|+++...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~--i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 72 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVL--LPEGGITAIVEFLEPLEARKAFRHLAYSKFH 72 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE--CCSSSSCEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--EeCCCCEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 678999999999999999999998766544333 3468899999999999999999999998754
No 276
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.83 E-value=1.2e-05 Score=72.41 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=55.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|...|..++.+..+.+. + ...++.+||||++.++|..|++.|+++...
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD 81 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 368999999999999999999999987655554442 2 345789999999999999999999987654
No 277
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=1.8e-05 Score=71.33 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=55.3
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+++.||||+++..++.++|..-|..+|.+..+.+. + ...++.++|+|.+.++|..|++.|+++..+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 91 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 91 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 57899999999999999999999987766555442 2 344789999999999999999999997654
No 278
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.83 E-value=1.7e-05 Score=72.88 Aligned_cols=66 Identities=11% Similarity=0.167 Sum_probs=55.6
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+++.||||+++..++.|+|...|..++.+..+.+. + ...++.+||||++.++|..|++.|+++...
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 93 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG 93 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC
Confidence 57999999999999999999999988766666542 2 334578999999999999999999997655
No 279
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.82 E-value=2.1e-05 Score=71.90 Aligned_cols=63 Identities=19% Similarity=0.130 Sum_probs=51.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhcc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
..++.||||+++..++.++|..-|..++.+..+.+ .. .+.+||||++.+||..|++.|+++..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i--~~-~g~afV~f~~~~~a~~Ai~~l~g~~~ 75 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV--YR-DGTGVVEFVRKEDMTYAVRKLDNTKF 75 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEE--ET-TTEEEEEESSHHHHHHHHHHSSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE--ec-CCEEEEEECCHHHHHHHHHHHCcCCc
Confidence 36899999999999999999999987664444433 22 28999999999999999999998654
No 280
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.82 E-value=1.7e-05 Score=72.52 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=53.9
Q ss_pred ccceEEEccCCCc-chhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQ-WAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~-~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.++.||||+++.. +++++|..-|..++.+..+.+ .++.+||||++.++|..|++.|+++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~ 88 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLA 88 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEET
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4689999999999 999999999997766555544 6899999999999999999999997654
No 281
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.82 E-value=1.6e-05 Score=73.16 Aligned_cols=70 Identities=16% Similarity=0.099 Sum_probs=55.6
Q ss_pred ccccccceEEEccCCCcchhHHHH---HhhhcccccCCceee-cC------CCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 650 VAVGSCFHVYVGNIPNQWAKDEIL---HESYKVVYKGPYMVT-DL------SCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 650 va~~~s~~LwVG~Iss~~~kEELf---sE~~kag~kgPv~f~-dl------seK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+.+...+.||||+++..++.|+|. ..|..++.+..+.+. +- ..++.+||||++.+||..|++.|+++...
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 334578999999999999999999 888876655555442 21 23469999999999999999999997654
No 282
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.82 E-value=1.6e-05 Score=71.50 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=54.9
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCCeeeccccCHHHHHHHHHHHhhhcc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d--lseK~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
.+++.||||+++..++.++|..-|..++.+..+.+. + ...++++||+|++.++|..|++.|+++..
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 81 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQT 81 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 368999999999999999999999987765555442 2 23368999999999999999999998763
No 283
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.81 E-value=2.3e-05 Score=69.07 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=54.1
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.++.||||++|..+++++|..-|..+ .+..+.+ + ..++.++|||++.++|..|++.|+++..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i-~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 66 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV-D-RNKRTAFVTLLNGEQAQNAIQMFHQYSFR 66 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE-E-GGGTEEEECCSCHHHHHHHHHHHTTEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE-e-CCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 57899999999999999999999886 4444444 2 77899999999999999999999997654
No 284
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.81 E-value=2.4e-05 Score=70.06 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=55.6
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCC--------cee-ec---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP--------YMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgP--------v~f-~d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+.+.||||+++..+++++|...|.+++.+.. +.+ .+ ...++.++|||++.++|..|++.|+++..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 36899999999999999999999998876655 433 22 345679999999999999999999997644
No 285
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.81 E-value=2.3e-05 Score=67.99 Aligned_cols=67 Identities=27% Similarity=0.338 Sum_probs=53.9
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhccccc-C-------Cc-eeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYK-G-------PY-MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~k-g-------Pv-~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++.||||+++..++.++|..-|..++.. | ++ .+....+++.++|||++.++|..|+ .|+++...
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 3478999999999999999999988876211 2 34 3334567999999999999999999 99987643
No 286
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.81 E-value=1.7e-05 Score=71.10 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=50.7
Q ss_pred cceEEEccCCCcchhHHHHHhhhccc-ccCCcee-ec---CCCCCeeeccccCHHHHHHHHHHHh
Q 001097 655 CFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLR 714 (1158)
Q Consensus 655 s~~LwVG~Iss~~~kEELfsE~~kag-~kgPv~f-~d---lseK~~LpVEF~t~edA~~Am~~l~ 714 (1158)
|+.|||+|+|..+++|+|...|..+| ....+.+ .+ ...++.+||||.+.+||..||+.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~ 65 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ 65 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcC
Confidence 68999999999999999999999887 4555544 22 5678899999999999999998774
No 287
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.79 E-value=1.5e-05 Score=69.04 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=53.1
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHH-hhhcc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHL-RQHRK 718 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l-~~~r~ 718 (1158)
..++.||||+++..++.++|..-|..++.+..+. ...+++.++|+|++.++|..|++.| +++..
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~--~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~ 74 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTIT--VVQRQQCAFIQFATRQAAEVAAEKSFNKLIV 74 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEE--EEGGGTEEEEEESSHHHHHHHHHTTTTTCEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEE--EECCCCEEEEEECCHHHHHHHHHHhcCCeeE
Confidence 4689999999999999999999998766544443 3456899999999999999999988 76543
No 288
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.79 E-value=3e-05 Score=69.47 Aligned_cols=63 Identities=22% Similarity=0.222 Sum_probs=52.7
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 656 ~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+.||||+++..+++++|..-|..++.+..+.+..- .++.++|||++.++|..|++.|+++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~ 63 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVIC 63 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeEC
Confidence 47999999999999999999998776555544211 6899999999999999999999987654
No 289
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.78 E-value=1.9e-05 Score=71.38 Aligned_cols=67 Identities=15% Similarity=0.025 Sum_probs=55.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d--lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|..-|..++.+..+.+. + ...++.++|+|++.++|..|++.|+++...
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 96 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD 96 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 478999999999999999999999987765555442 2 344679999999999999999999987654
No 290
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.78 E-value=2.1e-05 Score=71.32 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=52.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHh
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLR 714 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~ 714 (1158)
.+++.||||+++..++.|+|..-|..++.+..+.+. + ...++.+||+|++.++|..|++.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 468999999999999999999999987755544432 2 3468899999999999999999998
No 291
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.77 E-value=2.5e-05 Score=70.06 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=53.6
Q ss_pred cccceEEEccCCCcchhHHHH----HhhhcccccCCceee-cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEIL----HESYKVVYKGPYMVT-DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELf----sE~~kag~kgPv~f~-dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
...+.||||+++..++.++|. .-|..++.+..+.+. +-..++.++|||++.++|..|++.|+++...
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~ 78 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG 78 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 357899999999999999998 777776655544442 3222889999999999999999999997654
No 292
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.77 E-value=3e-05 Score=70.92 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=54.3
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee---ec---CCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV---TD---LSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f---~d---lseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
...-+.|||||++..++.|+|...|..+|.+....+ .| ...++.+||||.+.+||..|++.|++..
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~ 77 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLH 77 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSS
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCC
Confidence 445778999999999999999999998875433322 22 4567899999999999999999999863
No 293
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=2.8e-05 Score=71.88 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=50.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec------CCCCCeeeccccCHHHHHHHHHHH
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD------LSCEGALLMEFRTPEEATTAMAHL 713 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~d------lseK~~LpVEF~t~edA~~Am~~l 713 (1158)
..++.||||+++..+++|+|..-|..++.+. +.+ .+ ...++.+||||++.++|..|++.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 4689999999999999999999999877655 332 22 356899999999999999999998
No 294
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=3.8e-05 Score=70.65 Aligned_cols=68 Identities=13% Similarity=0.084 Sum_probs=57.6
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c-CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D-LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d-lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
...++.||||+++..++.|+|..-|..+|.+..+.+. + ...++.+||+|++.++|..|++.|+++..+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4478999999999999999999999988877666552 2 235889999999999999999999987644
No 295
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=2.4e-05 Score=73.85 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=51.8
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhh
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~ 715 (1158)
+++.||||+++..+++|+|..-|..+|.+..+.+ +.+|+.+||||++.+||..|++.|++
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i--~~~kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM--LKGKNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEE--ETTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--EcCCCEEEEEECCHHHHHHHHHHhcc
Confidence 6899999999999999999988887665555543 45699999999999999999999875
No 296
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=1.7e-05 Score=71.83 Aligned_cols=61 Identities=25% Similarity=0.346 Sum_probs=50.8
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccc-cCCceee--c---CCCCCeeeccccCHHHHHHHHHHHh
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVY-KGPYMVT--D---LSCEGALLMEFRTPEEATTAMAHLR 714 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~-kgPv~f~--d---lseK~~LpVEF~t~edA~~Am~~l~ 714 (1158)
+++.||||+++..++.|+|...|..++. +..+.+. + ...++.+||||++.++|..|++.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 6899999999999999999999987664 4444332 1 2578899999999999999999996
No 297
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.75 E-value=2.1e-05 Score=73.21 Aligned_cols=67 Identities=9% Similarity=-0.048 Sum_probs=57.0
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+.+.||||+++..+++++|...|.+++.+..+.+. + ...++.++|+|++.++|..|++.|+++...
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~ 74 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM 74 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 478999999999999999999999987766666542 3 456789999999999999999999997654
No 298
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.74 E-value=4.8e-05 Score=67.67 Aligned_cols=68 Identities=22% Similarity=0.160 Sum_probs=55.8
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
....+.||||+++..+++++|..-|..++.+..+.+ .+ ...++.++|||++.+||..|++.|+++...
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 346799999999999999999999998876654433 22 334789999999999999999999987654
No 299
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.73 E-value=2e-05 Score=69.83 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=54.7
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++.||||+++..++.++|..-|..++.+.-+ -.....++.++|||++.++|..|++.|+++...
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 79 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID 79 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3478999999999999999999999876644333 223456789999999999999999999987654
No 300
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.73 E-value=3e-05 Score=70.76 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=53.9
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+.||||+++..++.++|..-|..++.+..+. ...+++.+||+|++.++|..|++.|+++...
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~--i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 87 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIR--VFPEKGYSFVRFSTHESAAHAIVSVNGTTIE 87 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEE--EETTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--EeCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 588999999999999999999998766444433 3445999999999999999999999987654
No 301
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.72 E-value=5.3e-05 Score=70.61 Aligned_cols=68 Identities=16% Similarity=0.068 Sum_probs=57.2
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d--lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++.||||+++..+++++|..-|..+|.+..+.+. + ...++.+||+|++.++|..|++.|+++...
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 102 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD 102 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4578999999999999999999999987766655442 2 346789999999999999999999997654
No 302
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.72 E-value=1.9e-05 Score=72.64 Aligned_cols=66 Identities=11% Similarity=0.174 Sum_probs=55.2
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+++.||||+++..+++|+|...|..++.+..+.+. + ...++.+||||++.++|..|++.|+++..+
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 108 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG 108 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 57999999999999999999999987765555442 2 345789999999999999999999987654
No 303
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.71 E-value=6.5e-05 Score=70.04 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=46.6
Q ss_pred HHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 585 AHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 585 ~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
.+|+..|..||.|..+++..++ +||+|++.+.|.+|++ |+|..++ +|+.+.+
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred HHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 7899999999999999998876 8999999999999999 9999886 6666654
No 304
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=4.1e-05 Score=67.88 Aligned_cols=66 Identities=12% Similarity=0.078 Sum_probs=51.7
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCce-eecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYM-VTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~-f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.++.||||+++..++.++|..-|..++.+..+. +..-...+.+||||++.++|..|++.|+++...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~ 80 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE 80 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 588999999999999999999998766554442 211112233999999999999999999998754
No 305
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.70 E-value=4.1e-05 Score=71.42 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=56.2
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee---cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT---DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~---dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..++.||||+++..++.++|..-|..++.+..+.+. ....++.+||||++.++|..|++.|+++...
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 74 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH 74 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 367899999999999999999999988766655542 2345689999999999999999999987654
No 306
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.70 E-value=2.9e-05 Score=69.60 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=54.1
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee---ecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV---TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f---~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+.+.||||+++..++.++|..-|..++.+....+ .....++.+||||++.++|..|++ |+++...
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~ 83 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF 83 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC
Confidence 46899999999999999999988888774433222 235678999999999999999999 9987754
No 307
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.69 E-value=2.9e-05 Score=71.37 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=54.7
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+.+.||||+++..+++|+|...|..++.+..+.+. + ...++.+||||++.++|..|++.|++.-.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g 85 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDG 85 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCC
Confidence 4579999999999999999999999987655554442 2 335679999999999999999999874333
No 308
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.69 E-value=3.6e-05 Score=73.47 Aligned_cols=67 Identities=10% Similarity=-0.005 Sum_probs=56.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..+++++|...|..++.+..+.+. + ...++.+||||++.++|..|++.|+++...
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~ 114 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 114 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 479999999999999999999999987766555542 2 356789999999999999999999987654
No 309
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=2.7e-05 Score=69.96 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=54.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhc-ccccCCceee-c--CCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYK-VVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~k-ag~kgPv~f~-d--lseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
.+++.||||+++..++.++|..-|.. ++.+..+.+. + ...++.+||+|++.++|..|++.|+++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 75 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAV 75 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCc
Confidence 46899999999999999999999997 7766555442 2 3357899999999999999999999876
No 310
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.68 E-value=3.2e-05 Score=71.32 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=55.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|..-|..+|.+..+.+. + ...++.+||+|++.++|..|++.|+++..+
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~ 94 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 94 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 368999999999999999999999987765555442 2 344679999999999999999999997654
No 311
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.67 E-value=4.3e-05 Score=69.24 Aligned_cols=67 Identities=18% Similarity=0.110 Sum_probs=55.7
Q ss_pred cccceEEEccCCC------cchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPN------QWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss------~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+.++.|||||+|. .+.+++|...|..+|.+..+.+. + ...++.+||+|++.++|..|++.|+++...
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 4688999999999 99999999999887755555442 2 456899999999999999999999997754
No 312
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.66 E-value=3.7e-05 Score=71.46 Aligned_cols=63 Identities=19% Similarity=0.114 Sum_probs=50.3
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.++.||||+++..+++++|...|..++.+..+.+ ...+.+||||++.+||..|++.|+++...
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 77 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV---YRDGTGVVEFVRKEDMTYAVRKLDNTKFR 77 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEE---CTTSEEEEEESSHHHHHHHHHHHTTCBCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE---ecCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 5789999999999999999999887654433332 22299999999999999999999987654
No 313
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.65 E-value=4.3e-05 Score=72.08 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=55.1
Q ss_pred cccceEEEccCCCcchhHHHHHhhhccc-ccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag-~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
...+.|||||++..++.|+|..-|..+| .+..+.+..-..++.++|||++.|||..|++.|+++...
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~ 93 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR 93 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3578999999999999999999998776 444444432357899999999999999999999987654
No 314
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.65 E-value=2.9e-05 Score=73.41 Aligned_cols=67 Identities=15% Similarity=0.102 Sum_probs=55.9
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..++.||||+++..+++|+|...|..++.+..+.+. + ...++.+||||++.++|..|++.|+++...
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 110 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL 110 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 368999999999999999999999987766555442 2 234779999999999999999999997655
No 315
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.63 E-value=4.5e-05 Score=67.44 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=51.3
Q ss_pred ceEEEccCCCcchhHHHHHhhhccc--ccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 656 FHVYVGNIPNQWAKDEILHESYKVV--YKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 656 ~~LwVG~Iss~~~kEELfsE~~kag--~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..||||+++..+++|+|...|..+| ....+.+. + ...++.++|||.+.++|..|++.|+++...
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~ 71 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 71 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 3699999999999999999999887 66565542 2 345678999999999999999999997654
No 316
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.62 E-value=4.7e-05 Score=68.76 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=54.0
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c----CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d----lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++.||||+++..+++++|...|..++ +..+.+. + ...++.+||||++.++|..|+ .|+++...
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 82 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 82 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 34789999999999999999999999876 4444432 2 345789999999999999999 89987654
No 317
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.62 E-value=3.5e-05 Score=67.09 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=54.1
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee----cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~----dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+.||||+++..++.++|...|..++.+..+.+. ....++.++|||++.++|..|+ .|+++...
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~ 73 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR 73 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 57899999999999999999999987765555442 2345789999999999999999 89987654
No 318
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.61 E-value=3.5e-05 Score=70.27 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=53.8
Q ss_pred cccceEEEccCCCcc------hhHHHHHhhhcccccCCceee--cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQW------AKDEILHESYKVVYKGPYMVT--DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~------~kEELfsE~~kag~kgPv~f~--dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+.++.||||++|..+ ++++|...|..+|.+..+.+. ....++.+||+|++.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 357899999999988 678888888876655444432 2356799999999999999999999987644
No 319
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.61 E-value=6.4e-05 Score=68.74 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=55.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d--lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+.+.||||+++..++.|+|..-|..++.+..+.+. + ...++.+||+|.+.++|..|++.|+++...
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 92 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIK 92 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 368999999999999999999999987765555442 2 334678999999999999999999998754
No 320
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.60 E-value=4.2e-05 Score=70.10 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=54.3
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.++.||||+++..+++++|..-|..++.+..+.+. + ...++.+||||++.++|..|+ .|+++...
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 92 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL 92 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC
Confidence 58999999999999999999999987755555442 2 356789999999999999999 99987654
No 321
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.60 E-value=3.4e-05 Score=69.12 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=51.9
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..+++++|...|..+ ..+.+. + ...++.+||||++.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 80 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 478999999999999999999888854 333332 2 234579999999999999999999997655
No 322
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.59 E-value=6.1e-05 Score=70.44 Aligned_cols=72 Identities=10% Similarity=0.128 Sum_probs=56.4
Q ss_pred cccccccccceEEEccCCCcchhHHHHHhhhcccc---cCCceee-c--CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 647 INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVY---KGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 647 ~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~---kgPv~f~-d--lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+.+-.....+.||||+++..+++|+|...|..++. +..+.+. + ...++.+||||++.+||..|++ |+++..+
T Consensus 9 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 86 (118)
T 2db1_A 9 MLGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG 86 (118)
T ss_dssp CSSSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET
T ss_pred ccCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC
Confidence 33333456889999999999999999999998877 3344332 2 4457799999999999999999 8887654
No 323
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.57 E-value=6.1e-05 Score=63.86 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=50.5
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHh
Q 001097 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLR 714 (1158)
Q Consensus 656 ~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~ 714 (1158)
+.||||++|..++.++|...|..+|....+.+. + ...++.++|+|.+.++|..|++.|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 469999999999999999999988876666552 2 4457899999999999999999888
No 324
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=5.9e-05 Score=67.08 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=51.8
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..++.||||+++..++.++|..-|..++.+..+ +.+-.....++|||.+.++|..|++ |+++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~ 70 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLG 70 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEEC
Confidence 358899999999999999999999977655544 2232222289999999999999999 9987655
No 325
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.56 E-value=5.4e-05 Score=64.21 Aligned_cols=61 Identities=11% Similarity=0.165 Sum_probs=49.4
Q ss_pred eEEEccCCCcchhHHHHHhhhcccccCCceee----cCCCCCeeeccccCHHHHHHHHHHHhhhcc
Q 001097 657 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 657 ~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~----dlseK~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
.||||++|..+++++|...|..+|....+.+. ....++.++|+|++.++|..|++ |+++..
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~ 65 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI 65 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE
Confidence 48999999999999999999987765555442 23457899999999999999987 776554
No 326
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.56 E-value=2.7e-05 Score=76.24 Aligned_cols=106 Identities=15% Similarity=0.067 Sum_probs=51.1
Q ss_pred CceEEEEecCHHHHHHHHHhhcCCceeEEEEeeccCCCCccccc--ccccccceEEEccCCCcchhHHHHHhhhcccccC
Q 001097 606 KGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGLGTKGVING--VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKG 683 (1158)
Q Consensus 606 rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~F~r~~~g~rg~~~G--va~~~s~~LwVG~Iss~~~kEELfsE~~kag~kg 683 (1158)
.+|||-+|+-.+-++.|+..+.... ...+.|.++.-.+ ......+.||||++|..+++|+|..-|..++ ..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~------gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~ 73 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASMT------GGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PV 73 (139)
T ss_dssp --------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CS
T ss_pred CCcccccccCccccchhcccchhcc------CCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-Ce
Confidence 3789999999998888888776532 1111111111111 1223678999999999999999999999877 33
Q ss_pred Cceee---cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 684 PYMVT---DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 684 Pv~f~---dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+.+. +...++.+||||++.+||..|+ .|+++..+
T Consensus 74 ~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~ 111 (139)
T 2hgn_A 74 RVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ 111 (139)
T ss_dssp EEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS
T ss_pred EEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC
Confidence 33331 2445789999999999999999 66765544
No 327
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.56 E-value=4.6e-05 Score=68.77 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=51.6
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-----cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-----dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
...+.||||+++..+++++|..-|..+| +..+.+. ....++.+||||++.++|..|+ .|+++..+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~ 86 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 86 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 3689999999999999999999999877 5544442 1335789999999999999999 89987654
No 328
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.55 E-value=5.5e-05 Score=72.09 Aligned_cols=67 Identities=10% Similarity=0.074 Sum_probs=56.6
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCc------ee---ecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY------MV---TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv------~f---~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|...|..+|.+..+ .+ .....++.+||+|.+.++|..|++.|+++...
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 478999999999999999999999987765542 11 34677899999999999999999999997654
No 329
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.55 E-value=6.1e-05 Score=72.48 Aligned_cols=67 Identities=15% Similarity=0.049 Sum_probs=50.1
Q ss_pred cccceEEEccCCCcchhHHHHH----hhhcccccCCcee-ecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILH----ESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfs----E~~kag~kgPv~f-~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..+..++|.. -|..+|.+..+.+ .....++.+||+|++.++|..|++.|+++...
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~ 98 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ 98 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 4789999999999988887643 3343333333322 23567899999999999999999999997643
No 330
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.55 E-value=5.7e-05 Score=72.99 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=55.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..++.++|...|..++.+..+.+. + ...++.+||||++.++|..|++.|+++...
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 107 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD 107 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 368999999999999999999999987766555442 2 234579999999999999999999987654
No 331
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.54 E-value=4.4e-05 Score=68.87 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=54.5
Q ss_pred cccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 651 AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 651 a~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
...+.+.||||+++..+++++|...|..++.+..+.+. + ...++.+||||++.++|..|++. +++...
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD 83 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 34579999999999999999999999987655555442 2 23457999999999999999998 776654
No 332
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.54 E-value=7.6e-05 Score=68.88 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=53.6
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d--lseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
....+.||||++|..++.|+|..-|..+|.+..+.+. + ...++.+||||++.++|..|++ ++++.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~ 75 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQK 75 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCE
Confidence 3468999999999999999999999987766555442 2 4578999999999999999998 76654
No 333
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.51 E-value=7.9e-05 Score=67.00 Aligned_cols=61 Identities=15% Similarity=0.058 Sum_probs=50.0
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHH
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAH 712 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~ 712 (1158)
..+.+.||||+++..+++++|..-|..++.+..+.+. + ...++.+||||++.++|..|++.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 3478999999999999999999999987655555442 2 34467999999999999999986
No 334
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.51 E-value=0.00011 Score=68.24 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=53.0
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.|.-|||||++.++++++|..=|..+|.+..+. ....|+.+||||.+.+||..|++.||+....
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~--l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~ 69 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFH--PYLNQGIALCKYTTREEANKAQMALNNCVLA 69 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEE--EETTTTEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEE--EcCCCcEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 588999999999999998888888544444333 3448999999999999999999999997755
No 335
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=97.50 E-value=9.6e-05 Score=69.88 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=54.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCC--ceee----cCCCCCeeeccccCHHHHHHHHHHHhhh
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP--YMVT----DLSCEGALLMEFRTPEEATTAMAHLRQH 716 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgP--v~f~----dlseK~~LpVEF~t~edA~~Am~~l~~~ 716 (1158)
.+++.||||+++..+++|+|...|..++.+.. +.+. ....++++||||++. ||..|++.|+++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 46899999999999999999999998887754 4432 245689999999999 999999999997
No 336
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.49 E-value=6e-05 Score=84.05 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=54.5
Q ss_pred cccceEEEcc--CCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhcc
Q 001097 653 GSCFHVYVGN--IPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 653 ~~s~~LwVG~--Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
.++++||||| ++..+++|+|...|.++|.+..+. -...|+++||||++.|||..|++.||++..
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~--~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALL--MPPNKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEE--CCTTCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEE--EeCCCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 4899999998 567899999999999877654443 345899999999999999999999999875
No 337
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.47 E-value=0.0001 Score=66.40 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=52.0
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+++..+++++|..-|..++ +..+.+. + ...++.+||||++.++|..|+ .|+++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 81 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG 81 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC
Confidence 4789999999999999999999998864 3333332 2 234679999999999999999 89987654
No 338
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.47 E-value=6.8e-05 Score=74.03 Aligned_cols=66 Identities=9% Similarity=0.024 Sum_probs=54.1
Q ss_pred ccceEEEccCCCcchhHHHHHhhhccc--ccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVV--YKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag--~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+.||||+++..+++|+|...|..+| .+..+.+. | ...++++||||++.++|..|++.|+++..+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 578999999999999999999999877 55555442 2 445779999999999999999999987654
No 339
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.46 E-value=0.00014 Score=66.43 Aligned_cols=67 Identities=13% Similarity=0.187 Sum_probs=54.5
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccc---cCCceee---cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVY---KGPYMVT---DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~---kgPv~f~---dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
....+.||||+++..+++|+|..-|..++. +..+.+. ....++.+||||++.+||..|++ |+++..+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG 80 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC
Confidence 446889999999999999999999998776 3344332 24567899999999999999999 8877655
No 340
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=97.45 E-value=7.1e-05 Score=68.95 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=50.1
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHh
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLR 714 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~ 714 (1158)
+.+.||||+++..+++++|..-|..+|.+..+.+. + ...++.+||+|++.++|..|++.++
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC
Confidence 68999999999999999999999987766555442 2 4557899999999999999998775
No 341
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.45 E-value=5.3e-05 Score=70.29 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=54.3
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee----cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~----dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.++.||||+++..+++|+|..-|..+|.+..+.+. ....++.+||||++.++|..|+ .|+++..+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 103 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR 103 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC
Confidence 58999999999999999999999987766555442 2455789999999999999999 79887654
No 342
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.43 E-value=0.00015 Score=72.92 Aligned_cols=68 Identities=16% Similarity=0.068 Sum_probs=56.7
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d--lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++.||||+++..++.++|..-|..++.+..+.+. + ...++.+||+|++.+||..|++.|+++...
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 155 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD 155 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 3468999999999999999999999987766555542 2 446789999999999999999999987643
No 343
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.43 E-value=0.00021 Score=67.18 Aligned_cols=62 Identities=8% Similarity=0.080 Sum_probs=52.1
Q ss_pred ccCceEEeccCCCc-----cCH----HHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 568 SASKQLWLGSFGPE-----ASE----AHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~-----vte----~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
+|.-++.|-.++++ ... .+|.+.|..||.+..|+|..++ +||+|++-++|.+|++ |+|..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45567777777543 222 6799999999999999999988 9999999999999999 9999887
No 344
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.42 E-value=0.00011 Score=64.54 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=52.8
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec--CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~d--lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
...+.||||+++..++.++|..-|..+ .+..+.+ .+ ...++.++|||++.+||..|++ |+++..+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~ 75 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG 75 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC
Confidence 468999999999999999999999886 4444443 23 3346799999999999999999 9987654
No 345
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.41 E-value=0.00013 Score=71.36 Aligned_cols=70 Identities=14% Similarity=0.017 Sum_probs=51.3
Q ss_pred ccccccccceEE--EccCCCcchhHHHHHhhhcccccCCceeecCCCCCe-eeccccCHHHHHHHHHHHhhhcc
Q 001097 648 NGVAVGSCFHVY--VGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGA-LLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 648 ~Gva~~~s~~Lw--VG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~-LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
+|+...+++.|+ ||+++-.++.|+|..-|..+|.+..+.+.. ..++. +||||++.+||..||+.|+|+..
T Consensus 19 ~~~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~-~~~gfqAFVef~~~~~A~~Ai~~LnG~~i 91 (130)
T 3zzy_A 19 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNI 91 (130)
T ss_dssp ------CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred ccccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHcCCCee
Confidence 445555666555 999999999999998888777665554432 34566 99999999999999999999764
No 346
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.39 E-value=0.00014 Score=64.91 Aligned_cols=62 Identities=11% Similarity=-0.015 Sum_probs=51.6
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+++.||||+. .+++++|..-|..++.+..+.+ ...++.+||+|++.++|..|++.|+++...
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i--~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 75 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM--DPPRNCAFVTYEKMESADQAVAELNGTQVE 75 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE--ETTTTEEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe--cCCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 6899999995 7889999988887665544443 467899999999999999999999987654
No 347
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.39 E-value=0.0002 Score=66.19 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=53.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhccccc-CCceee---cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYK-GPYMVT---DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~k-gPv~f~---dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+.+.||||+++..+++++|..-|..++.+ ..+.+. ....++.+||||++.++|..|++. +++..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~ 82 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN 82 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC
Confidence 468999999999999999999999988766 445442 245789999999999999999876 665443
No 348
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.38 E-value=7.7e-05 Score=64.95 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=50.0
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHH
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHL 713 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l 713 (1158)
.+.+.||||+++..++.++|..-|..+|.+..+.+. + ...++.++|+|++.++|..|++.+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 73 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 73 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhC
Confidence 468999999999999999999999887765555442 2 344679999999999999999763
No 349
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=97.38 E-value=0.00013 Score=77.88 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=54.6
Q ss_pred cccceEEEccCCCcc---------hhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhcc
Q 001097 653 GSCFHVYVGNIPNQW---------AKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~---------~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
..++.||||+++..+ ++|+|...|..+|.+..+.+ +..++.+||+|.+.++|..||+.|+++..
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v--~~~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRY--VESKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEE--EGGGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEE--ECCCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 478999999999988 68888888887665555543 46799999999999999999999999886
No 350
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.37 E-value=6.3e-05 Score=65.92 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=52.5
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 656 ~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+.||||+++..++.++|..-|..+|.+..+.+. + ...++.++|+|++.+ |..|++.|+++..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~ 68 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM 68 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC
Confidence 579999999999999999988887766655442 2 445789999999999 99999999987654
No 351
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.35 E-value=0.00014 Score=73.78 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=53.6
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhcc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
....||||+++..+++|+|...|.++|.+..+.+..-..++.+||||++.+||..|++.|+++..
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i 109 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI 109 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 35668999999999999999999887766666553333456899999999999999999999875
No 352
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.33 E-value=0.00011 Score=68.70 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=54.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCc-eeec---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv-~f~d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
...+.||||+++..+++++|..-|..++.+..+ .+.+ ...++.+||||++.+||..|++ |+++..+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 92 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG 92 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 357899999999999999999999988866553 3322 4457899999999999999999 8887654
No 353
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.33 E-value=0.00022 Score=64.93 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=52.6
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCC-cee-e--cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-YMV-T--DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgP-v~f-~--dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
...+.||||++|..++.++|..-|..++.+.. +.+ . ....++.+||||++.+||..|++. +++..+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~ 82 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG 82 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC
Confidence 46899999999999999999999998775543 322 1 345678999999999999999987 665543
No 354
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.33 E-value=0.00016 Score=66.45 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=53.3
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+.||||+++..+++++|..-|..++.+..+.+. + ...++.+||+|++.++|..|++. +++...
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~ 94 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID 94 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC
Confidence 57999999999999999999999987766666542 2 34578999999999999999987 655433
No 355
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.39 E-value=3.6e-05 Score=70.92 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=54.6
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCC--------cee-ec---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGP--------YMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgP--------v~f-~d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+++.||||+++..+++++|..-|..++.+.. +.+ .+ ...++.+||+|++.++|..|++.|+++...
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 6899999999999999999999988776554 332 12 345789999999999999999999987655
No 356
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.27 E-value=0.00027 Score=68.26 Aligned_cols=61 Identities=16% Similarity=0.071 Sum_probs=50.2
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCe-eeccccCHHHHHHHHHHHhhhcc
Q 001097 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGA-LLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 656 ~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~-LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
..||||+++-.+++|+|...|..+|.+..+.+.. .++. +||||++.+||..||+.|+++..
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~--~~Gf~aFVef~~~~~A~~A~~~LnG~~i 87 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVLCAQKAKAALNGADI 87 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE--SSSEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4467999999999999999999877666655433 2464 99999999999999999999875
No 357
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.24 E-value=0.00045 Score=65.33 Aligned_cols=63 Identities=11% Similarity=-0.020 Sum_probs=53.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.||||+. .++.|+|..-|..+|.+..+.+ ...++.+||+|++.++|..|++.|+++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i--~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~ 99 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM--DPPRNCAFVTYEKMESADQAVAELNGTQVE 99 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE--ETTTTEEEEECSSHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE--eCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 36899999995 5889999999998777666654 378999999999999999999999987654
No 358
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.23 E-value=0.00028 Score=61.83 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=45.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHH
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTA 709 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~A 709 (1158)
..++.||||+++..+++|+|..-|..++.+..+.+. ...++.+||||++.++|..|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIP-KPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECC-SSCCSCCEEECSCHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEe-cCCCCEEEEEECCHHHHHHH
Confidence 358999999999999999999999877655554432 23689999999999999653
No 359
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.22 E-value=5.5e-05 Score=67.89 Aligned_cols=67 Identities=13% Similarity=0.070 Sum_probs=53.1
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCCeeeccccCHHHHHHHHH---HHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMA---HLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d--lseK~~LpVEF~t~edA~~Am~---~l~~~r~~ 719 (1158)
..++.||||+++..++.++|..-|..+|.+..+.+. + ...++.++|||++.++|..|++ .|++++..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~ 79 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeECCEEEE
Confidence 368999999999999999999999887655544432 2 3356899999999999999999 66665543
No 360
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=97.14 E-value=6.5e-05 Score=81.86 Aligned_cols=8 Identities=25% Similarity=0.551 Sum_probs=3.3
Q ss_pred HHHHHHhh
Q 001097 347 SRYKKLCN 354 (1158)
Q Consensus 347 ~~ykklc~ 354 (1158)
-||-.+|.
T Consensus 132 dRy~aI~~ 139 (448)
T 2z73_A 132 DRYNVIGR 139 (448)
T ss_dssp HHHHHTTS
T ss_pred HHHHhccc
Confidence 34444443
No 361
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.14 E-value=0.0004 Score=62.06 Aligned_cols=59 Identities=10% Similarity=0.048 Sum_probs=44.7
Q ss_pred cccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHH
Q 001097 649 GVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATT 708 (1158)
Q Consensus 649 Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~ 708 (1158)
+.+..+.+.||||++|..++.|+|...|.++|.+..+.+. ...++.+||||++.++|..
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~-~~srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIP-KPFRAFAFVTFADDKVAQS 63 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECC-SSCCSEEEEEESCHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEe-eCCCCEEEEEECCHHHHHH
Confidence 3445678999999999999999999999987665555442 2479999999999999973
No 362
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.14 E-value=0.00023 Score=60.18 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=46.3
Q ss_pred eEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHH
Q 001097 657 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAH 712 (1158)
Q Consensus 657 ~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~ 712 (1158)
.||||++|..++.++|..-|..++....+.+. + ...++.++|+|++.++|..|++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh
Confidence 48999999999999999999987765555432 2 45688999999999999999884
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.12 E-value=0.00097 Score=61.54 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=55.1
Q ss_pred cccceEEEccCCCcch-----------hHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWA-----------KDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~-----------kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.|+|.++-.... +|+|..+|.++|.+..+.+.+-..++.++|+|.+.++|..|++.|+++...
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4799999999954432 578999999888777775556667999999999999999999999997654
No 364
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.07 E-value=0.00036 Score=63.89 Aligned_cols=66 Identities=18% Similarity=0.142 Sum_probs=51.3
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec--CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~d--lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
....+.||||++|..+++|+|..-|..++.. .+.+ .+ ...++.+||||++.+||..|++ ++++..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQ 80 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 3468899999999999999999999887733 3333 22 3346689999999999999995 6766544
No 365
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.03 E-value=0.0002 Score=74.68 Aligned_cols=65 Identities=11% Similarity=0.091 Sum_probs=53.0
Q ss_pred ccceEEEccCCCcchhHHHHHhhhccc--ccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhcc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVV--YKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag--~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
..+.||||+++..+++++|...|..++ .+..+.+. + ...++++||||++.++|..|++.|+++..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~ 137 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL 137 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE
Confidence 467899999999999999999999877 56555542 2 34567999999999999999999998764
No 366
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.00 E-value=0.00039 Score=67.18 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=47.7
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccC--Cceee---cCCCCCeeeccccCHHHHHHHHHHHh
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKG--PYMVT---DLSCEGALLMEFRTPEEATTAMAHLR 714 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kg--Pv~f~---dlseK~~LpVEF~t~edA~~Am~~l~ 714 (1158)
..+.||||++|..+++|+|..-|..++ +. .+.+. +...++.+||||++.+||..|++..+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~ 105 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGLE-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 105 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCC-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCC
Confidence 578899999999999999999888762 22 23221 24568999999999999999998543
No 367
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=96.86 E-value=0.0013 Score=61.06 Aligned_cols=67 Identities=18% Similarity=0.055 Sum_probs=54.4
Q ss_pred cccceEEEccCCCc-----chhHHHHHhhhcccccCCceee-c----CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQ-----WAKDEILHESYKVVYKGPYMVT-D----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~-----~~kEELfsE~~kag~kgPv~f~-d----lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+++.|+|.++-.. -.+|+|..|+.++|.+..+.+. + ...++.+||+|.+.+||..|++.|+++..+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~ 82 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG 82 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 48999999999752 3678999999988877666553 2 246889999999999999999999997654
No 368
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.84 E-value=0.001 Score=62.56 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=46.4
Q ss_pred ccce-EEEccCCCcchhHHHHHhhhc-ccccC-CceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFH-VYVGNIPNQWAKDEILHESYK-VVYKG-PYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~-LwVG~Iss~~~kEELfsE~~k-ag~kg-Pv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+|.. |||++++-.+..|+|...+.. |...| .+ .++.. +.++|+|.+.|+|.+|++.|+++-..
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~V--l~Vtg-G~AfV~F~~~esA~~A~~~l~G~~l~ 72 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKV--LSITG-CSAILRFINQDSAERAQKRMENEDVF 72 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCE--EECCT-TCEEEEESSHHHHHHHHHHHTTCCSS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCee--EEEec-CEEEEEECCHHHHHHHHHHhcCCccC
Confidence 6777 999999999998875544432 11231 22 23322 99999999999999999999997644
No 369
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.82 E-value=0.0011 Score=62.20 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=51.5
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee---cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT---DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~---dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+.||||++|-.++.|+|..-|..+ .+..+.+. +...++.+||||.+.+||..|+ .|+++..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~ 81 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI 81 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC
Confidence 47899999999999999999999876 44444332 2456889999999999999999 57776654
No 370
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.80 E-value=0.0012 Score=63.22 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=51.2
Q ss_pred ccceEEEccCCCcchhHHHHHhhhccccc----CCcee-ec--CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYK----GPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~k----gPv~f-~d--lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+.||||++|-.+++|+|..-|..++.+ ..+.+ .+ ...++.+||||++.+||..|++. +++..+
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~ 93 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG 93 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC
Confidence 56899999999999999999999987653 33433 22 44578999999999999999985 655544
No 371
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=96.56 E-value=0.0011 Score=67.48 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=52.3
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d--lseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
..+.||||++|..++.|+|..-|..+|.+..+.+. + ...++.+||||++.++|..|++.+++.-
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~ 174 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKY 174 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeE
Confidence 57899999999999999999999987765555442 2 4467899999999999999998776533
No 372
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.40 E-value=0.0054 Score=58.55 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=59.2
Q ss_pred CceEEeccCCCccC-----HHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 570 SKQLWLGSFGPEAS-----EAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 570 S~~LWVGnL~~~vt-----e~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
.++|.|-||..+|- ++.+|++|..|+++-+|-.+++=.=..|.|.+.++|++|+..|+|.... |+.|+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 46789999987763 3678999999999999988875556799999999999999999998654 8888864
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=95.84 E-value=0.014 Score=55.45 Aligned_cols=70 Identities=19% Similarity=0.094 Sum_probs=51.6
Q ss_pred ccccccceEEEccCCCc----------chhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 650 VAVGSCFHVYVGNIPNQ----------WAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 650 va~~~s~~LwVG~Iss~----------~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+.-.+++.|.+-++=.. -.+|+|..|+.++|.+..+.+..-..++.++|+|.+.++|..|++.|+|+..+
T Consensus 2 ~~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 2 VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 33456777777776543 24567888888777666655432335899999999999999999999997754
No 374
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=95.69 E-value=0.013 Score=54.33 Aligned_cols=67 Identities=13% Similarity=0.118 Sum_probs=51.4
Q ss_pred cccceEEEccCCCc--c--------hhHHHHHhhhcccccCCceee-cC-----CCCCeeeccccCHHHHHHHHHHHhhh
Q 001097 653 GSCFHVYVGNIPNQ--W--------AKDEILHESYKVVYKGPYMVT-DL-----SCEGALLMEFRTPEEATTAMAHLRQH 716 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~--~--------~kEELfsE~~kag~kgPv~f~-dl-----seK~~LpVEF~t~edA~~Am~~l~~~ 716 (1158)
.+|+.|.+-|+=.. . ..|+|..|+.++|.+..+.+. +- ..++.++|+|.+.++|..|++.|+++
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 47999999987442 2 346888999887766655442 22 35789999999999999999999997
Q ss_pred ccc
Q 001097 717 RKS 719 (1158)
Q Consensus 717 r~~ 719 (1158)
..+
T Consensus 83 ~f~ 85 (105)
T 3v4m_A 83 KFA 85 (105)
T ss_dssp EET
T ss_pred EeC
Confidence 754
No 375
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.50 E-value=0.037 Score=51.47 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=53.9
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEecCC--------ceEEEEecCHHHHHHHHHhhcCCc
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK--------GFALVEYINIIDAIRAREYIRNHF 630 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~r--------gfAFVeF~~i~DAv~A~~~L~G~~ 630 (1158)
.+|-|-+|+|+.||+++.++++.++.++-+.+.+++ +-|||.|.+.+|+.+=.+.++|+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~ 69 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYV 69 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence 478899999999999999999999998888775433 689999999999999999999985
No 376
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=94.98 E-value=0.021 Score=54.47 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=51.1
Q ss_pred ccceEEEccCCCc-----chhHHHHHhhhcccccCCceee-cC-------CCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQ-----WAKDEILHESYKVVYKGPYMVT-DL-------SCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~-----~~kEELfsE~~kag~kgPv~f~-dl-------seK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+|+.|++.|+-.. -.+|+|..|+.++|.+..+.+. +- ..++.+||+|.+.++|..|++.|+++.-+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 7999999998543 2468899999987766666442 32 12478999999999999999999997643
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.43 E-value=0.062 Score=52.19 Aligned_cols=60 Identities=8% Similarity=0.006 Sum_probs=49.8
Q ss_pred ccccceEEEccCCCc-chhHHHHHhhhcccccCCceeec-CCCCCeeeccccC-HHHHHHHHHHHh
Q 001097 652 VGSCFHVYVGNIPNQ-WAKDEILHESYKVVYKGPYMVTD-LSCEGALLMEFRT-PEEATTAMAHLR 714 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~-~~kEELfsE~~kag~kgPv~f~d-lseK~~LpVEF~t-~edA~~Am~~l~ 714 (1158)
....+.||||+++.. +++|+|...|.. +|++.+++ ..++...+|+|.+ .++|..|++.|+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~---~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSN---HGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCS---SCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTT
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHh---cCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhh
Confidence 446899999999999 999998888885 56776654 5667789999999 899999999874
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.42 E-value=0.087 Score=51.20 Aligned_cols=62 Identities=8% Similarity=-0.026 Sum_probs=57.4
Q ss_pred CceEEeccCCCccCHHHHHHHhhcc-----CCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCce
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRF-----GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS 631 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~f-----GpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~ 631 (1158)
.+.|=+=+|+.-++++.|+.+.+.| |+|..+...++-+=|+|+|+|..+|-.|.=+|+|..+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef 87 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQF 87 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeee
Confidence 3567777999999999999999999 9999999999999999999999999999999999643
No 379
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=93.76 E-value=0.038 Score=51.07 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=35.7
Q ss_pred HHHHHhh-hcccccCCceee-c--CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 670 DEILHES-YKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 670 EELfsE~-~kag~kgPv~f~-d--lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
|+|..|+ .++|.+..+.+. + ...++.++|+|++.++|..|++.|+++...
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred HHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3444555 766655554442 1 235889999999999999999999997643
No 380
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.49 E-value=0.029 Score=65.05 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=42.8
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCc-eEEEEecCHHHHHHH
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKG-FALVEYINIIDAIRA 622 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rg-fAFVeF~~i~DAv~A 622 (1158)
.++.|.++|. .++..++.+|...|.+||+|.++.++..+| ||.|||.+.+.|..+
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~ 105 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSL 105 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHH
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHH
Confidence 3568999996 799999999999999999999999998555 999999997766654
No 381
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.06 E-value=0.09 Score=48.79 Aligned_cols=50 Identities=20% Similarity=0.131 Sum_probs=39.5
Q ss_pred cchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhh
Q 001097 666 QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQH 716 (1158)
Q Consensus 666 ~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~ 716 (1158)
.+++++|..-|..+|.+..+.+. ...++++||||++.++|..|++.+++.
T Consensus 28 ~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~~ 77 (100)
T 2d9o_A 28 GYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVGL 77 (100)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCBC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCCC
Confidence 46788888888877665555544 367899999999999999999986553
No 382
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.54 E-value=0.43 Score=55.91 Aligned_cols=142 Identities=19% Similarity=0.280 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHhccCCchHHHHHHhhccccccccCchhHhhhhhheeeecccccee
Q 001097 54 EIRSVYECYRRLKACIAQKDARRLPELEQAYLSLITASRGCTSVQRIVADLVPRYALYCPTALEAATEVVIYMHNSSVAL 133 (1158)
Q Consensus 54 e~r~v~~~y~r~k~~~~~~~~~~~~~leq~y~~li~~srgc~svqri~adliprya~~cptaleaa~kv~i~m~~~~~a~ 133 (1158)
-|..+|++|.||-..= | -..+=|.+|..+|.++.|=..++|+.|.+||||..+=|.--|.|.-..+|.-
T Consensus 6 ~ie~LY~~~~~L~da~---d--k~~~~~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLc------ 74 (507)
T 3u0r_A 6 TVEELYRNYGILADAT---E--QVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLC------ 74 (507)
T ss_dssp CHHHHHHHHHHHHHTG---G--GGGGGHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHH------
T ss_pred hHHHHHHHhhHhhhcc---c--cccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH------
Confidence 3789999999996541 1 2244578899999999999999999999999999999999999988777643
Q ss_pred eccCCCCcchhhhhhhhhhccccccccccccCCCCccccccchhhhhhhhhhhhhhccCCCceEeechhhhhccCCchHH
Q 001097 134 INRGEDADGVAFQTASACIFGLGDICRTASSEVPTSSVIRGICSAVFHNVLDFFISSFDGKDIIHTVDKEITKMLDSDEV 213 (1158)
Q Consensus 134 ~~rged~dgva~~ta~aci~gl~dic~~a~s~~~~s~v~~gicsav~~~vltffi~~f~gkdi~~~~~~~~~~~~d~~e~ 213 (1158)
-+||.+ .-+.-|-||.+||.. +. ...+
T Consensus 75 --EDed~~-----IR~qaik~Lp~~ck~---~~-------------------------------------------i~ki 101 (507)
T 3u0r_A 75 --EDEDVS-----IRRQAIKELPQFATG---EN-------------------------------------------LPRV 101 (507)
T ss_dssp --TCSSHH-----HHHHHHHHGGGGCCT---TC-------------------------------------------HHHH
T ss_pred --hcccHH-----HHHHHHHhhHHHhhh---hh-------------------------------------------hhhH
Confidence 234433 345568889999954 11 1234
Q ss_pred HHhhhcccCCCchhhhhhhHHHHHhHHHHHHhcCchHHHHHHHHhhCccc
Q 001097 214 FLGLKKKFSDEDESSLIKLSKFRLLSLLQIFFSSPKNLLAACFELFNPSV 263 (1158)
Q Consensus 214 ~~~lk~~~~~~~~~~~~~l~~~~~l~ll~if~~~p~~~l~acf~l~~s~~ 263 (1158)
-++|-|-+.-|+..-+.-. --||+.+|-..||+.|.+=|..+.+.+
T Consensus 102 aDvL~QlLqtdd~~E~~~V----~~sL~sllk~Dpk~tl~~lf~~i~~~~ 147 (507)
T 3u0r_A 102 ADILTQLLQTDDSAEFNLV----NNALLSIFKMDAKGTLGGLFSQILQGE 147 (507)
T ss_dssp HHHHHHHTTCCCHHHHHHH----HHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhccchHHHHHH----HHHHHHHHhcChHHHHHHHHHHHcccc
Confidence 4555555554444333322 247788888999999999998888764
No 383
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=90.93 E-value=0.52 Score=46.01 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=51.5
Q ss_pred eeecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCce
Q 001097 555 WYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS 631 (1158)
Q Consensus 555 ~~~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~ 631 (1158)
.|-.|++...+-.-..+-|-|=..++.. .+.|..+|++||.|.........++-.|.|.+..+|.+|+.. +|+.+
T Consensus 9 f~~~~~~l~~~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii 83 (119)
T 1wwh_A 9 FYTQGDSLTSEDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIF 83 (119)
T ss_dssp ------------CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEE
T ss_pred ceeCCcccCCCCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEe
Confidence 3456676666655555566666666664 678889999999999999867899999999999999999987 77543
No 384
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=90.08 E-value=0.056 Score=71.05 Aligned_cols=15 Identities=7% Similarity=0.339 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHh
Q 001097 56 RSVYECYRRLKACIA 70 (1158)
Q Consensus 56 r~v~~~y~r~k~~~~ 70 (1158)
++|-.+=.+||+++.
T Consensus 273 ~~II~~N~~Lk~~~~ 287 (1752)
T 3h0g_A 273 SDIIKANANVRRCEQ 287 (1752)
T ss_dssp HHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 385
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=89.79 E-value=0.061 Score=70.72 Aligned_cols=32 Identities=28% Similarity=0.200 Sum_probs=14.3
Q ss_pred eeeccCCCCcchhhhh-hhhhhccccccccccc
Q 001097 132 ALINRGEDADGVAFQT-ASACIFGLGDICRTAS 163 (1158)
Q Consensus 132 a~~~rged~dgva~~t-a~aci~gl~dic~~a~ 163 (1158)
-+|..||-..|+--+- -.|=-.||+++|.--.
T Consensus 611 v~i~~gell~g~l~K~~lg~~~~~li~~i~~~~ 643 (1752)
T 3h0g_A 611 MLIENGEIIYGVVDKKTVGASQGGLVHTIWKEK 643 (1752)
T ss_dssp EEECBSCEEEECCSHHHHSSCTTCHHHHSSSSS
T ss_pred EEEEcCeEEecccchHHhccCcccHHHHHHHHH
Confidence 3555566655553211 1111146666665443
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.38 E-value=0.96 Score=43.36 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=53.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhc-c----CCcceEEEecCCceEEEEecCHHHHHHHHHh----hcCCcee
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDR-F----GPLEHFFFFPIKGFALVEYINIIDAIRAREY----IRNHFSW 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~-f----GpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~----L~G~~~~ 632 (1158)
+..+.+-|-||++++.++.|+--|+. - |++++|...+ +-|+|.|.+..+|..-++- |+|..+.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 35688999999999999999999998 2 8999999887 9999999999999877665 7775543
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=88.57 E-value=0.96 Score=43.10 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=49.2
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCceeEEE
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSWRVK 635 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~ 635 (1158)
.-|+| ..++.--..||+.+|..||-+.==|+ +-.-|||-|.+.+.|..|+..|.=...++|+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi--dDTsAlvvf~~~~~a~~al~~i~k~~~y~i~ 78 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI--DDTSAFVSLSQPEQVQIAVNTSKYAESYRIQ 78 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE--ETTEEEEECSCHHHHHHHHHHHHHCCSSEEE
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEE--cCCeEEEEecCHHHHHHHHHhcccCCceEEE
Confidence 34555 99999999999999999996665555 4578999999999999999988633434443
No 388
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=88.29 E-value=0.51 Score=44.64 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=50.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec--------CCceEEEEecCHHHHHHHHHhhcCCc
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--------IKGFALVEYINIIDAIRAREYIRNHF 630 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~--------~rgfAFVeF~~i~DAv~A~~~L~G~~ 630 (1158)
|-+|-|-.|+|+.||+++.++++..=+++-+.+.+ --+-|||.|.+.+|..+-.+..+|..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~ 77 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYI 77 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcE
Confidence 56899999999999999999988776655444432 23668999999999999999999975
No 389
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=87.90 E-value=0.23 Score=49.44 Aligned_cols=64 Identities=11% Similarity=-0.044 Sum_probs=49.5
Q ss_pred ceEEEccC----CCcchhHHHHHhhhcccccCCcee-ec---CCCCCeeeccccC----HHH----HHHHHH--HHhhhc
Q 001097 656 FHVYVGNI----PNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRT----PEE----ATTAMA--HLRQHR 717 (1158)
Q Consensus 656 ~~LwVG~I----ss~~~kEELfsE~~kag~kgPv~f-~d---lseK~~LpVEF~t----~ed----A~~Am~--~l~~~r 717 (1158)
+.||||++ +..++.++|-.=|..+|.+..+.+ .| ...++..+|||.. +++ |..|.+ .|++++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 999999999999998887777755 34 5668999999996 666 566666 667776
Q ss_pred cc
Q 001097 718 KS 719 (1158)
Q Consensus 718 ~~ 719 (1158)
.+
T Consensus 83 I~ 84 (136)
T 2j8a_A 83 IM 84 (136)
T ss_dssp ET
T ss_pred ec
Confidence 55
No 390
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=87.12 E-value=0.34 Score=49.14 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=41.2
Q ss_pred chhHHHHHhhhcccccCCceee-cC-------CCCCeeeccccCHHHHHHHHHHHhhhcc
Q 001097 667 WAKDEILHESYKVVYKGPYMVT-DL-------SCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 667 ~~kEELfsE~~kag~kgPv~f~-dl-------seK~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
..+++|..|+.++|....+.+. +. ..++..+|||.+.++|..|++.|+|+--
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 4678899999987766666553 21 4567899999999999999999999763
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=86.17 E-value=0.54 Score=44.83 Aligned_cols=55 Identities=15% Similarity=0.006 Sum_probs=45.8
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEec-CCceEEEEecCHHHHHHHHHhhcCCc
Q 001097 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHF 630 (1158)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~ 630 (1158)
-|+| +.++.---.||+.+|..|| .|.+.= +-.-|||-|.+.+.|..|+..|.-..
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg---gv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~ 63 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG---NIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAE 63 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE---EEEEEEEETTEEEEEEEEECHHHHHHHHHTTCS
T ss_pred EEEE-eCChhhhhHHHHHHHhccC---CEEEEEEcCCeEEEEecCHHHHHHHHHhcccCC
Confidence 4566 9999999999999999999 555532 66889999999999999999885333
No 392
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=81.52 E-value=2.3 Score=49.70 Aligned_cols=62 Identities=16% Similarity=0.059 Sum_probs=50.7
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-CCceEEEEecCHHHHHHHHHhhcCCceeEE
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSWRV 634 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI 634 (1158)
-..-|+|| ++......||++.|+.||. |.+.. +...|||.|.+.++|..+++.+.-...++|
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~---v~V~widdt~a~V~~~~~~~a~~~l~~~~~~~~~~i 501 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN---IQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRI 501 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC---CEEEECSSSEEEEECSCHHHHHHHHHHHTTCSSCEE
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC---EEEEEEcCCeEEEEECCHHHHHHHHHHHHhCCceEE
Confidence 34567777 8888899999999999994 44544 778899999999999999999976654544
No 393
>1ow1_A Smart/HDAC1 associated repressor protein; beta-alpha-barrel, SPOC domain,, transcription; 1.80A {Homo sapiens} SCOP: b.131.1.3
Probab=67.43 E-value=1.7 Score=45.69 Aligned_cols=125 Identities=18% Similarity=0.221 Sum_probs=74.2
Q ss_pred cccceeccccc-ccCccceeeeeecccccccccccCCCCCCCCcccccCCccchhhhc--cccccCC-CCCccccccccc
Q 001097 1008 LLQYQWQGALC-KSGVHYCTIYAQREESDICKYTHDISEPAEWPAKLDMTKRTDFRHV--KSTFTST-PPNKREVCRLVP 1083 (1158)
Q Consensus 1008 ~i~~qWqG~l~-kSGAnyCtIl~s~vdsdIC~a~na~sEPaEWPsilD~TlRtdfQhV--EsTF~~t-Pp~rREVrRLvp 1083 (1158)
..-.-|||.+. |+..-.+.+.+..++.++..... ++... ...+..+.|..++.. +.+.... .+....+.=.+|
T Consensus 35 ~~p~~WqG~L~LKn~~f~v~mh~v~Gn~~l~~~~L--~~~~~-~~~LRItQRmRLd~~qLe~V~rRi~~~~~~cilLAlp 111 (195)
T 1ow1_A 35 KYPIVWQGLLALKNDTAAVQLHFVSGNNVLAHRSL--PLSEG-GPPLRIAQRMRLEATQLEGVARRMTVETDYCLLLALP 111 (195)
T ss_dssp HSCEEEEEEEEETTEEEEEEEEEEEECHHHHHHHS--CCC----CCEEECEEEECSHHHHHHHHHHTSSTTTEEEEEEEE
T ss_pred hCchhceeeeeeecchhhhEEEEEeCcHHHHHHhC--CCCCC-CCceeeehhhccChHHHHHHHHHHhCCCCceEEEEec
Confidence 34567999986 44444555566666777665332 22211 244556666665543 3333332 122333333445
Q ss_pred CCCCCc-------chhhhHHHHHhhcccccceecccchh-hHHHhhhccCCchhhhhhcc
Q 001097 1084 SSPGDH-------KGFQDFVSYLKQRECAGVIKIPAVKS-IWARLMFILPYSQDICSMLS 1135 (1158)
Q Consensus 1084 ss~sD~-------k~fqDFisyLrqkd~AGVIKiPa~~~-~w~rlLfLlPpSeEic~~L~ 1135 (1158)
++...+ +-.+.|+.||++|+.||+|-++.... -=+-.|++.|+.|+.-+-|.
T Consensus 112 ~~~~~~d~~~q~~~L~~~fV~YL~qKqAAGIisl~~~~s~~~~~vlhiFPPCeFs~~~L~ 171 (195)
T 1ow1_A 112 CGRDQEDVVSQTESLKAAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPCEFSESHLS 171 (195)
T ss_dssp CCSSHHHHHHHHHHHHHHTHHHHHHHTEEEEEEECCTTCCSCCEEEEEECSSHHHHHHHH
T ss_pred CCCCchhhHhhhhHHHHHHHHHHHhCccceEEecCCCCCCCcceEEEEcCCcHHHHHHHH
Confidence 543222 22677999999999999999986333 23458999999999987444
No 394
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=66.75 E-value=9.3 Score=37.37 Aligned_cols=65 Identities=9% Similarity=-0.007 Sum_probs=51.4
Q ss_pred cceEEEccCCCcchhHHHHHhhhc--ccccCCc-eeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 655 CFHVYVGNIPNQWAKDEILHESYK--VVYKGPY-MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 655 s~~LwVG~Iss~~~kEELfsE~~k--ag~kgPv-~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
-+.|=+=+||..+.+..+-.-+.. ....+++ .+.-.++-++++|||++..+|..|+..|+|.-.+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEET
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeec
Confidence 567778899999999988444433 3345666 6667788899999999999999999999997654
No 395
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=56.07 E-value=2.4 Score=48.66 Aligned_cols=8 Identities=38% Similarity=0.829 Sum_probs=3.9
Q ss_pred hhhHHHHH
Q 001097 1092 FQDFVSYL 1099 (1158)
Q Consensus 1092 fqDFisyL 1099 (1158)
.++.+.|.
T Consensus 225 L~eLv~~y 232 (535)
T 2h8h_A 225 LQQLVAYY 232 (535)
T ss_dssp HHHHHHHH
T ss_pred hHHhheee
Confidence 44555554
No 396
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.88 E-value=5.3 Score=37.40 Aligned_cols=51 Identities=12% Similarity=0.199 Sum_probs=34.6
Q ss_pred cchhHHHHHhhh-cccccCCc-eeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 666 QWAKDEILHESY-KVVYKGPY-MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 666 ~~~kEELfsE~~-kag~kgPv-~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.|-.|+|..++. +|..+|.+ .+....++ ++|+|++-+.|.+|+. |+++..+
T Consensus 22 ~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 22 NFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEET
T ss_pred ccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeC
Confidence 466755555543 23355544 33344333 8999999999999998 9998765
No 397
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.85 E-value=8.8 Score=36.24 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=39.5
Q ss_pred ceEEEccCCC-----cchhHHHHHhhh-cccccCCc-eeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 656 FHVYVGNIPN-----QWAKDEILHESY-KVVYKGPY-MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 656 ~~LwVG~Iss-----~~~kEELfsE~~-kag~kgPv-~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
-.+.|--.++ .|-.|+|..++. +|..+|.+ .+....++ ++|+|+.-++|.+|++ |+++..+
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeC
Confidence 3556655553 366655555433 23345533 33334333 9999999999999998 9998876
No 398
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=52.40 E-value=37 Score=32.51 Aligned_cols=55 Identities=11% Similarity=0.248 Sum_probs=43.0
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhh
Q 001097 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1158)
Q Consensus 656 ~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~ 715 (1158)
..++| ..|..|...+|+.=|..++ .+.|.=+ +...+++=|.+.+.|..||..|+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fg---gv~I~Wi-dDTsAlvvf~~~~~a~~al~~i~k 71 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFG---NIQISWI-DDTSAFVSLSQPEQVQIAVNTSKY 71 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTC---SCCCEEE-ETTEEEEECSCHHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccC---CEEEEEE-cCCeEEEEecCHHHHHHHHHhccc
Confidence 34555 9999999999998888654 5544333 257888999999999999999863
No 399
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.77 E-value=23 Score=33.90 Aligned_cols=61 Identities=10% Similarity=-0.006 Sum_probs=39.8
Q ss_pred cceEEEccCCCcc-hhHHH----HHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 655 CFHVYVGNIPNQW-AKDEI----LHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 655 s~~LwVG~Iss~~-~kEEL----fsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
-+.|.|-+++..+ ..+++ ..=+.+++... .|.-+.+=..+.|.|.+.|+|++|...|++..
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~--tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~ 70 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDT--TFQYFKSFKRVRINFSNPLSAADARLRLHKTE 70 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSC--EEEEETTTTEEEEECSSTTHHHHHHHTSTTSE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCc--ceeecCcceEEEEEeCChHHHHHHHHHhccce
Confidence 4568899997743 33333 33333322222 34344555699999999999999988888754
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=35.59 E-value=22 Score=35.33 Aligned_cols=46 Identities=24% Similarity=0.355 Sum_probs=35.5
Q ss_pred CccCHHHHHHHhhccCCcce-EE----------------Eec---CCceEEEEecCHHHHHHHHHh
Q 001097 580 PEASEAHIRFQIDRFGPLEH-FF----------------FFP---IKGFALVEYINIIDAIRAREY 625 (1158)
Q Consensus 580 ~~vte~dL~~~F~~fGpLe~-V~----------------~~~---~rgfAFVeF~~i~DAv~A~~~ 625 (1158)
+......+-.+|++||.|-. +- .++ ..++--|.|.+..+|.+|++.
T Consensus 16 p~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~ 81 (132)
T 3p3d_A 16 PETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE 81 (132)
T ss_dssp CGGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh
Confidence 44556778889999999965 32 122 578889999999999999864
No 401
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=29.08 E-value=46 Score=38.45 Aligned_cols=77 Identities=10% Similarity=0.037 Sum_probs=53.1
Q ss_pred cccccccCceEEec--cCCCccCHHHHHHHhh----ccCCcceEEEe--c---CCceEEEEecCHHHHHHHHHhhc---C
Q 001097 563 AMDIFSASKQLWLG--SFGPEASEAHIRFQID----RFGPLEHFFFF--P---IKGFALVEYINIIDAIRAREYIR---N 628 (1158)
Q Consensus 563 a~dv~~~S~~LWVG--nL~~~vte~dL~~~F~----~fGpLe~V~~~--~---~rgfAFVeF~~i~DAv~A~~~L~---G 628 (1158)
++.|+.+..+++-. .+..+.+.-||+.+|- .||=|..+++. + .+..+++.|.++++|.+|+..++ |
T Consensus 177 ~levV~~dG~v~~~~~~~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~~~~g 256 (476)
T 3pm9_A 177 GVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAA 256 (476)
T ss_dssp EEEEECTTSCEEECCCCCSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHHHHHHG
T ss_pred EEEEEccCCeEEEcCCcccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHHHHhcC
Confidence 45666666665532 2344444456666653 56677887763 3 24578999999999999999985 4
Q ss_pred CceeEEEEeec
Q 001097 629 HFSWRVKFMDV 639 (1158)
Q Consensus 629 ~~~~RI~F~r~ 639 (1158)
-.+..+||+|.
T Consensus 257 ~~p~a~El~d~ 267 (476)
T 3pm9_A 257 GNLTSFELIAE 267 (476)
T ss_dssp GGEEEEEEEEH
T ss_pred CCceEEEecCH
Confidence 46779999986
No 402
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=28.98 E-value=36 Score=40.81 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=58.2
Q ss_pred ccccccccCceEEec-cCCCccCHHHHHHHh----hccCCcceEEEe--c---CCceEEEEecCHHHHHHHHHhhcCC--
Q 001097 562 AAMDIFSASKQLWLG-SFGPEASEAHIRFQI----DRFGPLEHFFFF--P---IKGFALVEYINIIDAIRAREYIRNH-- 629 (1158)
Q Consensus 562 ~a~dv~~~S~~LWVG-nL~~~vte~dL~~~F----~~fGpLe~V~~~--~---~rgfAFVeF~~i~DAv~A~~~L~G~-- 629 (1158)
..+.|+.+...|+-+ ....+++--||..+| +-+|=|..+++. + .+.+++|.|.+.++|.+|++.+...
T Consensus 334 lgleVVlpdG~i~~~~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~~~~ 413 (658)
T 4bby_A 334 VHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRC 413 (658)
T ss_dssp EEEEEEETTEEEECSCCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred eeEEEEeCCCcccccccccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHHcCC
Confidence 367888888888754 344555556888887 367888887763 3 4567899999999999999988544
Q ss_pred ceeEEEEeec
Q 001097 630 FSWRVKFMDV 639 (1158)
Q Consensus 630 ~~~RI~F~r~ 639 (1158)
.+..+||+|.
T Consensus 414 ~psa~El~D~ 423 (658)
T 4bby_A 414 APASIRLMDN 423 (658)
T ss_dssp CCSEEEEECH
T ss_pred CccccccccH
Confidence 3448899874
No 403
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=28.30 E-value=31 Score=40.97 Aligned_cols=77 Identities=12% Similarity=0.093 Sum_probs=53.2
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhh----ccCCcceEEEe--c-C--CceEEEEecCHHHHHHHHHhhc--CCce
Q 001097 563 AMDIFSASKQLWLGSFGPEASEAHIRFQID----RFGPLEHFFFF--P-I--KGFALVEYINIIDAIRAREYIR--NHFS 631 (1158)
Q Consensus 563 a~dv~~~S~~LWVGnL~~~vte~dL~~~F~----~fGpLe~V~~~--~-~--rgfAFVeF~~i~DAv~A~~~L~--G~~~ 631 (1158)
++.|+.+..++..|.+..+.+.-||+.+|- .||=|..+++. + + +.++++.|.+.++|.+|++.+. |-.+
T Consensus 266 ~levVl~dG~i~~~~~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~p 345 (584)
T 2uuu_A 266 SFRTVTPTGTLELRNGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSSEVIP 345 (584)
T ss_dssp EEEEEETTEEECCC-------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHHTCCC
T ss_pred eEEEEeCCCCEEECCccccCCCcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHHhcCCCc
Confidence 567888888887776655556667777764 56778887763 3 2 3577899999999999999876 4455
Q ss_pred eEEEEeec
Q 001097 632 WRVKFMDV 639 (1158)
Q Consensus 632 ~RI~F~r~ 639 (1158)
..+||+|.
T Consensus 346 ~a~El~d~ 353 (584)
T 2uuu_A 346 TMIRVYDP 353 (584)
T ss_dssp SEEEEECH
T ss_pred eEEEEech
Confidence 69999986
No 404
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=24.68 E-value=16 Score=48.88 Aligned_cols=7 Identities=29% Similarity=0.207 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 001097 703 PEEATTA 709 (1158)
Q Consensus 703 ~edA~~A 709 (1158)
.|.|+++
T Consensus 1341 IEAAR~~ 1347 (1733)
T 1twf_A 1341 IEAGRAA 1347 (1733)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 405
>4ffe_X CPXV018 protein; viral immune evasion proteins, structural genomics, NKG2D DE ligand, niaid, national institute of allergy and infectious diseases; 2.25A {Cowpox virus}
Probab=24.44 E-value=24 Score=34.59 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=17.4
Q ss_pred HHHhcCchHHHHHHHHhhCcc
Q 001097 242 QIFFSSPKNLLAACFELFNPS 262 (1158)
Q Consensus 242 ~if~~~p~~~l~acf~l~~s~ 262 (1158)
+||+-+=||+..--|.||+-.
T Consensus 50 ~~fl~~yknif~eff~lfrrv 70 (151)
T 4ffe_X 50 EIFLPFYKNVFSEFFSLFRRV 70 (151)
T ss_dssp SSHHHHHHHHHHHHHHTCCCC
T ss_pred eeehHHHHHHHHHHHHHHhhC
Confidence 367888899999999999644
No 406
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=22.40 E-value=18 Score=48.24 Aligned_cols=9 Identities=11% Similarity=-0.068 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 001097 61 CYRRLKACI 69 (1158)
Q Consensus 61 ~y~r~k~~~ 69 (1158)
+=+|||+++
T Consensus 272 ~N~~Lk~~~ 280 (1733)
T 1twf_A 272 ANISLETLE 280 (1733)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444433
Done!