BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001098
(1158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The
Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRH-DASCLALLMDGS 1051
+V+IFSQ + + ++ L++ GI F + + S+ + S+D F D++ L+
Sbjct: 574 RVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTR 633
Query: 1052 AS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
A LG++L V + + W+ + Q ++RAHR+G + V L + TVEE++LE
Sbjct: 634 AGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLE 692
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With
Dsdna
pdb|1Z63|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With
Dsdna
Length = 500
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 992 DKVIIFSQFLEH----IHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALL 1047
DK+ IF+QF++ ++IE++L + +Y + + + F+++ S ++
Sbjct: 342 DKIAIFTQFVDXGKIIRNIIEKELNT---EVPFLYGELSKKERDDIISKFQNNPSVKFIV 398
Query: 1048 MDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQ 1106
+ A G++L+ RV + W+ ++E+Q R +R+G TR + V L GT+EE+
Sbjct: 399 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEK 458
Query: 1107 MLEFL 1111
+ + L
Sbjct: 459 IDQLL 463
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN
Length = 500
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 992 DKVIIFSQFLEH----IHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALL 1047
DK+ IF+QF++ ++IE++L + +Y + + + F+++ S ++
Sbjct: 342 DKIAIFTQFVDMGKIIRNIIEKELNT---EVPFLYGELSKKERDDIISKFQNNPSVKFIV 398
Query: 1048 MDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQ 1106
+ A G++L+ RV + W+ ++E+Q R +R+G TR + V L GT+EE+
Sbjct: 399 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEK 458
Query: 1107 MLEFL 1111
+ + L
Sbjct: 459 IDQLL 463
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
pdb|1Z5Z|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
Length = 271
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 67/125 (53%), Gaps = 8/125 (6%)
Query: 992 DKVIIFSQFLEH----IHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALL 1047
DK+ IF+QF++ ++IE++L + F +Y + + + F+++ S ++
Sbjct: 113 DKIAIFTQFVDMGKIIRNIIEKELNTE-VPF--LYGELSKKERDDIISKFQNNPSVKFIV 169
Query: 1048 MDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQ 1106
+ A G++L+ RV + W+ ++E+Q R +R+G TR + V L GT+EE+
Sbjct: 170 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEK 229
Query: 1107 MLEFL 1111
+ + L
Sbjct: 230 IDQLL 234
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
EUKARYOTIC Rad54
Length = 644
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMD 1049
DKV++ S + + + + E+ + + M + K ++ F + +S + +L
Sbjct: 417 DKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 476
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ GL+L R+ + +P W+ + +EQ ++R R G + ++ L GT+EE++L+
Sbjct: 477 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQ 536
>pdb|2L7P|A Chain A, Ashh2 A Cw Domain
Length = 100
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 427 DHFACNETWVQCDACHKWRKLLDASVA--DATAAWFCSMNSDPTHQSCGDPEE 477
D ++ WV+CD C KWR++ + V D ++ W C NSD C +E
Sbjct: 20 DSYSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNSDKRFADCSKSQE 72
>pdb|2E61|A Chain A, Solution Structure Of The Zf-Cw Domain In Zinc Finger
Cw-Type Pwwp Domain Protein 1
pdb|2RR4|A Chain A, Complex Structure Of The Zf-Cw Domain And The H3k4me3
Peptide
Length = 69
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 434 TWVQCD--ACHKWRKL---LDASVADATAAWFCSMNSDPTHQSCGDPEEAW 479
WVQC C KWR+L +D SV W C N+D + C PEE W
Sbjct: 17 VWVQCSFPNCGKWRRLCGNIDPSVLPDN--WSCDQNTDVQYNRCDIPEETW 65
>pdb|1YGG|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
From Actinobacillus Succinogenes
pdb|1YLH|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
From Actinobaccilus Succinogenes In Complex With
Manganese And Pyruvate
Length = 560
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 461 CSMNSDPTHQSCGDPEEAWDNCQSITYLPGFHAKGTSDGKKQNVSFFISVLKEHYLLINS 520
++++DP Q GD E WD + G +AK T + ++N ++ LL N
Sbjct: 275 TTLSTDPKRQLIGDDEHGWDESGVFNFEGGCYAK-TINLSQENEPDIYGAIRRDALLENV 333
Query: 521 MTKKALTWLAKLSPDELSEMETTGLASPI 549
+ + + D+ S+ E T ++ PI
Sbjct: 334 VVRAD----GSVDFDDGSKTENTRVSYPI 358
>pdb|1OEN|A Chain A, Phosphoenolpyruvate Carboxykinase
Length = 540
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 461 CSMNSDPTHQSCGDPEEAWDNCQSITYLPGFHAKGTSDGKKQNVSFFISVLKEHYLLINS 520
++++DP + GD E WD+ + G +AK K+ + ++ ++ L+ +
Sbjct: 255 TTLSTDPARRLIGDDEHGWDDDGVFNFEGGSYAKTIKLSKEAEPEIYAAIRRDA--LLEN 312
Query: 521 MTKKALTWLAKLSPDELSEMETTGLASPI 549
+T +A + D+ S+ E T ++ PI
Sbjct: 313 VTVRA---GGTIDFDDGSKTENTRVSYPI 338
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,435,885
Number of Sequences: 62578
Number of extensions: 1420269
Number of successful extensions: 2829
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2818
Number of HSP's gapped (non-prelim): 13
length of query: 1158
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1049
effective length of database: 8,152,335
effective search space: 8551799415
effective search space used: 8551799415
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)