BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001098
(1158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M1I1|FB304_ARATH F-box protein At3g54460 OS=Arabidopsis thaliana GN=At3g54460 PE=2
SV=1
Length = 1378
Score = 1392 bits (3604), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 713/1253 (56%), Positives = 877/1253 (69%), Gaps = 121/1253 (9%)
Query: 1 MSVVHQLQSLVNQKCLKIEARVMRVEIGENGAARAAVLVDIYLPIAAWSGWQFPKSGAIA 60
+SVV QL +LV KCLKI RV++V+ GENG RA VLVD+YLPI WSGWQFPKS A A
Sbjct: 132 ISVVQQLHALVANKCLKIICRVVKVDKGENGEERAVVLVDVYLPIELWSGWQFPKSQATA 191
Query: 61 GSLFRHVSCDWEKRKSVLLDGGECFKD--GCDSSIWNISDCHVLDWK-----PDS----- 108
+LF+H+SCDW R S+L DG +++ G +IW++SDCHV D K P+S
Sbjct: 192 AALFKHLSCDWGLRVSIL-DGKSIWEEANGRIKAIWDLSDCHVFDCKLLCNAPNSPKRRL 250
Query: 109 ---------------------SRVKPEDNSCSTGISDIADDIVISILTRLGPIDLVRIAA 147
SRV P +SC +G+ D++DD++ISIL +L DL IAA
Sbjct: 251 FKLHEIFKSLPSPGNHDVSYSSRVLPSTDSCVSGVWDLSDDVLISILMKLDTKDLFSIAA 310
Query: 148 TCRHLRCLAASIMPCMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVN 207
CR R L + I+PCM LKLFPHQQAAV WML RE AEV HPLY+ TEDGF FYVN
Sbjct: 311 VCRLFRSLTSLIVPCMNLKLFPHQQAAVGWMLERERKAEVSSHPLYLSFDTEDGFSFYVN 370
Query: 208 TVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWCTHN 267
V+GDI T AP ++DF GGMFCDEPGLGKTITALSLILKTQGT+ADPP+G+ I+WCTH
Sbjct: 371 AVTGDIITEAAPMVKDFRGGMFCDEPGLGKTITALSLILKTQGTMADPPEGLPIVWCTHK 430
Query: 268 GDPRCGYYDLSGDKLTCNNMCLGKRTFSQNARRRQLSVGKFTPMDDLKCPLLKRARLVDP 327
D +C YY+ + D+ T N+M KR S ++ R Q+S F P+ + K K+ARL+DP
Sbjct: 431 SDKKCAYYEYTSDQFTSNSMSAVKRFQSPSSCRNQVSFEAFRPLLESKSLPFKQARLMDP 490
Query: 328 GDE-IEGFSSFSDVDMISPLVASSEPATHLVRCTRNLGQVKKNLFHTYDEESNICNDRNA 386
D+ +E +S + + + + AS + +C ++LG V+KNL Y+ S + A
Sbjct: 491 DDQTLESKNSNFENEFETHIPASLDLK---AQCRKSLGNVRKNLLPAYNGASELSEVMEA 547
Query: 387 KGNSTAKKRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNETWVQCDACHKWRK 446
K S KK + C+R K TD ++ W+QCD+C KWR+
Sbjct: 548 KRISNWKKCG-----------------MITGCKR--KGLTDSDVESDIWMQCDSCSKWRR 588
Query: 447 LLDASVADATAAWFCSMNSDPTHQSCGDPEEAWDNCQSITYLPGFHAKGTSDGKKQNVSF 506
++D V+ +AWFCS N+DP +QSC DPEE WD Q I YL GF+ KG S + N+SF
Sbjct: 589 IIDEGVSVTGSAWFCSNNNDPAYQSCNDPEELWDKSQPIKYLQGFYTKGASGEESDNISF 648
Query: 507 FISVLKEHYLLINSMTKKALTWLAKLSPDELSEMETTGLASPILGSYAAGETQGFHKIFQ 566
F SVL+EH ++S KKAL WLAKL ++LS+MET GL P+LG + GF +IF+
Sbjct: 649 FTSVLREHKSSVSSTVKKALIWLAKLPLEKLSQMETVGLPGPVLG--LKLDALGFQRIFR 706
Query: 567 AFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLSRATLIVVPSYLVD 626
AFGL RVEKG+T+W+YPK L+NL FD+ AL++ALC+PLD+ RLYLS+ATLIVVP+ LV+
Sbjct: 707 AFGLKSRVEKGVTKWFYPKFLENLVFDVPALKVALCQPLDTFRLYLSKATLIVVPTNLVN 766
Query: 627 HWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQV 686
HW TQIQ+HV QL + VW DH + S HSLAWDYDVVITTF+RLSAEW RKKSP++QV
Sbjct: 767 HWLTQIQKHVCSDQLRILVWADHIELSPHSLAWDYDVVITTFSRLSAEWNPRKKSPLIQV 826
Query: 687 HWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFL 746
HWLRVMLDEGHTLGSS++LTNK QMA+SLTA NRWLLTGTPTPNTPNSQLSH+QP+LKFL
Sbjct: 827 HWLRVMLDEGHTLGSSVSLTNKFQMAVSLTACNRWLLTGTPTPNTPNSQLSHIQPLLKFL 886
Query: 747 HEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQTIPLCIKEVTFL 806
HEE YG+N K W+ GILRPFEAEMEEGR RLLQLL RCMIS+RK DLQ IP CIK+VT+L
Sbjct: 887 HEEVYGENPKFWEAGILRPFEAEMEEGRLRLLQLLQRCMISSRKKDLQMIPPCIKKVTYL 946
Query: 807 NFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGH 866
NF HA +YNELV TVRRNIL+ADWNDPSHVESLLN KQWKFRS TI N+RLSCCVAGH
Sbjct: 947 NFLPGHARSYNELVETVRRNILLADWNDPSHVESLLNSKQWKFRSITISNVRLSCCVAGH 1006
Query: 867 IKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNC--------------LRHI 912
IK+TDAG DI+ETMD L+EN LD ++EY+FI+ +L+ G NC RH+
Sbjct: 1007 IKMTDAGHDIKETMDALLENDLDLWTEEYSFIQDSLIGGCNCKRCGEWCRLPVITPCRHL 1066
Query: 913 LCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQ----- 967
LCLDCVA+DSE+C++ GCG+LYEMQ+PE L RPENPNPKWPVP+DLIELQPSY+Q
Sbjct: 1067 LCLDCVALDSERCTISGCGYLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNP 1126
Query: 968 -WSNTNT------------------------------------------FLKQDLYRPNL 984
W +T++ FL ++L+ +
Sbjct: 1127 DWQSTSSSKVSYLVDRLRKLHEGNKKSILSFNKTDNDNLEDNPPGTSEAFLGKELHGQDC 1186
Query: 985 ESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCL 1044
S DKV+IFSQFLEHIHVIEQQLT AGIKF MYSPM S NK+K+L MF++DA C+
Sbjct: 1187 GSQMVFVDKVLIFSQFLEHIHVIEQQLTTAGIKFGKMYSPMQSYNKMKALAMFQNDADCM 1246
Query: 1045 ALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104
ALLMDGS +LGLDLSFVT VFLMEPIWD+S+EEQVISRAHRMGA RPI VETL MRGT+E
Sbjct: 1247 ALLMDGSGALGLDLSFVTHVFLMEPIWDKSLEEQVISRAHRMGAKRPIFVETLTMRGTIE 1306
Query: 1105 EQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAESNYLSHLSFVRTN 1157
EQM+ FL+D ++ RLL + ++ ++E RS RTLHD ESNYLSHLSFVR++
Sbjct: 1307 EQMMRFLEDAEKSDRLLSGDYIEAKQETTRSRRTLHDLVESNYLSHLSFVRSD 1359
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 2 OS=Arabidopsis
thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 148/565 (26%), Positives = 241/565 (42%), Gaps = 80/565 (14%)
Query: 615 ATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAE 674
LIV P L+ WKT+I+ H +PG L ++V +P L DVVITT+ L++E
Sbjct: 491 GNLIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRPKDAKLLSQSDVVITTYGVLTSE 550
Query: 675 WGRRKKSP---MMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNT 731
+ + + + V W R++LDE HT+ +S + + A +L A RW LTGTP N
Sbjct: 551 FSQENSADHEGIYAVRWFRIVLDEAHTIKNSKSQIS--LAAAALVADRRWCLTGTPIQN- 607
Query: 732 PNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARK- 790
L L +L+FL E +G W+ + +PFE E G + +L M+ K
Sbjct: 608 ---NLEDLYSLLRFLRIEPWG-TWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKS 663
Query: 791 -TDLQTIPLCI-----KEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNP 844
TD + P+ + V + +E Y+ L R + + + V L N
Sbjct: 664 STDREGRPILVLPPADARVIYCELSESERDFYDALF--KRSKVKFDQFVEQGKV--LHN- 718
Query: 845 KQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDV--------------LVENGLDP 890
+ S LRL C V G D E D+ L G D
Sbjct: 719 ----YASILELLLRLRQCCDHPFLVMSRG-DTAEYSDLNKLSKRFLSGKSSGLEREGKDV 773
Query: 891 LSQEYAFIKYNLLNGGN------CLR-----------HILCLDCVAM---DSEKCSLPGC 930
S+ + L G CL H LC +C+ +S P C
Sbjct: 774 PSEAFVQEVVEELRKGEQGECPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVC 833
Query: 931 GFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKAL 990
Q E++T P + ++++ ++ + S L++ LE ++
Sbjct: 834 RNTVSKQ--ELITAPTESRFQ-------VDVEKNWVESSKITALLEE------LEGLRSS 878
Query: 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD- 1049
K I+FSQ+ + +++ L+ F + + + K L F D S L LLM
Sbjct: 879 GSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSILVLLMSL 938
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ +G++L+ + F+M+P W+ ++EEQ + R HR+G T+ + + ++GTVEE+M E
Sbjct: 939 KAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERM-E 997
Query: 1110 FLQDTDRCRRLLKEELVKPEREGAR 1134
+Q R +R++ L E AR
Sbjct: 998 AVQ--ARKQRMISGALTDQEVRSAR 1020
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 166 KLFPHQQAAVEWMLHREWN-----AEVLRHPLYID--LATEDGFYFYVNTVSGDIATGTA 218
+L P+Q+ A+ WM E A + HP + LA + Y+N+ +GD
Sbjct: 347 ELRPYQKQALHWMTQLEKGNCTDEAATMLHPCWEAYCLADKRELVVYLNSFTGDATIHFP 406
Query: 219 PTMRDFHGGMFCDEPGLGKTITALSLIL------KTQGTLADPPDGVKII 262
T++ GG+ D GLGKT+ +SL+L + G L +G K+I
Sbjct: 407 STLQMARGGILADAMGLGKTVMTISLLLAHSWKAASTGFLCPNYEGDKVI 456
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 144/567 (25%), Positives = 239/567 (42%), Gaps = 87/567 (15%)
Query: 615 ATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAE 674
TLI+ P L+ WK +++ H +P + + V+ + +DVV+TT+ L++
Sbjct: 742 GTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLTSA 801
Query: 675 WGRRKKSPMM-QVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPN 733
+ + + + ++ W R++LDE HT+ S T + L++ RW LTGTP N
Sbjct: 802 YKQDMANSIFHRIDWYRIVLDEAHTIKSW--KTQAAKATFELSSHCRWCLTGTPLQN--- 856
Query: 734 SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARK--- 790
+L L +L FLH E + N W I +P+E G + +L M+ K
Sbjct: 857 -KLEDLYSLLCFLHVEPWC-NWAWWSKLIQKPYENGDPRGLKLIKAILRPLMLRRTKETR 914
Query: 791 ------------TDLQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHV 838
TD+Q I E +T + + V + ++ ++ + +
Sbjct: 915 DKEGSLILELPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQFVAQGKVLHNY--ANIL 972
Query: 839 ESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDV------LVENGLDPLS 892
E LL +Q CC H + + D Q+ D+ ++N D +S
Sbjct: 973 ELLLRLRQ--------------CC--NHPFLVMSRADSQQYADLDSLARRFLDNNPDSVS 1016
Query: 893 Q---EYAFIKYNL--LNGGNCLRHILCLD---------CVAMDSEKCSL-----PGCGFL 933
Q A+I+ + L GN +CL+ C +C L P CG
Sbjct: 1017 QNAPSRAYIEEVIQDLRDGNSKECPICLESADDPVLTPCAHRMCRECLLTSWRSPSCGLC 1076
Query: 934 YEMQSPEILTRPENPNPKWPVPQDLI---ELQPSYRQWSNTNTFLKQDLYRPNLESNK-- 988
++ IL R E + P D I ++ ++++ S + LK LE K
Sbjct: 1077 PICRT--ILKRTELIS----CPTDSIFRVDVVKNWKESSKVSELLK------CLEKIKKS 1124
Query: 989 ALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLM 1048
+K I+FSQ+ + ++E L G +F + + K L F LLM
Sbjct: 1125 GSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLM 1184
Query: 1049 DGSA-SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
A +GL+L+ + VFLM+P W+ ++EEQ I R HR+G R + V ++ TVEE+M
Sbjct: 1185 SLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERM 1244
Query: 1108 LEFLQDTDRCRRLLKEELVKPEREGAR 1134
Q R +R++ L E AR
Sbjct: 1245 ---QQVQARKQRMIAGALTDEEVRSAR 1268
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 14/124 (11%)
Query: 156 AASIMPCMKLKLFPHQQAAVEWMLHREWNAEVLR-----HPLY--IDLATEDGFYFYVNT 208
A S + C L P+Q+ A+ WM E +V + HP + + E Y+N
Sbjct: 608 APSTLTC---NLRPYQKQALYWMSESEKGIDVEKAAETLHPCWEAYRICDERAPSIYLNI 664
Query: 209 VSGDIATGTAPTMRDF-HGGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWCTHN 267
SG+ AT PT GG+ D GLGKT+ ++LIL G P+ ++ N
Sbjct: 665 FSGE-ATIQFPTATQMARGGILADAMGLGKTVMTIALILARPGR--GNPENEDVLVADVN 721
Query: 268 GDPR 271
D R
Sbjct: 722 ADKR 725
>sp|Q5ACX1|RAD5_CANAL DNA repair protein RAD5 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAD5 PE=3 SV=1
Length = 1084
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 150/612 (24%), Positives = 250/612 (40%), Gaps = 117/612 (19%)
Query: 590 LAFDLAALRLALCEPLD------SVRLYLSRATLIVVPSYLVDHWKTQIQQ--------- 634
L +A L L P D S R Y S+ TLIVVP L+ WK++ ++
Sbjct: 467 LGKTIATLALVNSVPYDNFPEPKSDRPYASQTTLIVVPMSLLFQWKSEFEKCNNNSRHVC 526
Query: 635 --HVRPGQLHLFVWT-----DHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSP---MM 684
H Q W+ + K P + Y V+ F RLS + + P +
Sbjct: 527 RLHYGEDQETNLAWSLCNPDNSKIPIV--MITTYGTVLNEFTRLSKRRNSKGELPKVGLY 584
Query: 685 QVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLK 744
V + R++LDEGH + + T K L +S +W+LTGTP N +L L + K
Sbjct: 585 SVKFFRIILDEGHNIRNRNTKTAK--SVYELQSSRKWILTGTPIVN----RLDDLYSLTK 638
Query: 745 FLHEEAYGQNQKAWDGGILRPFEAE-----MEEGRSRLLQLLHRCMISARKTDLQTIPLC 799
FL + + N W + PFE + ++ +S L + R S +K + L
Sbjct: 639 FLELDPWN-NFSYWKTFVTLPFEQKKISQTLDVVKSILEPIFLRRTKSQKKNGKPLVELP 697
Query: 800 IKEVTF--LNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNL 857
KEV + F ++ Y ++ A + + LL +++ T I L
Sbjct: 698 AKEVVIEQIKFNDDEEKLYQWF-----KDRAYASFAEGIKSGQLL--RRYTQILTHILRL 750
Query: 858 RLSCC----VAGHIKVTDA------GEDIQETMDVLVENGL----DPLSQEYAFIKYNLL 903
R CC + G ++ D ED+++ + + EN + D +E + Y +
Sbjct: 751 RQVCCHVDLIGGAHEMDDEIIEAEQDEDMRKFLTSIKENQIRFANDTDVKEKMYNLYGKI 810
Query: 904 NGGN----CLR--------------HILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRP 945
N C + H CL C+ L F E++ ++
Sbjct: 811 KEENECSICTQVPIPYSEMVVTPCAHTFCLSCI--------LEHLDFQKELKKEKLCPNC 862
Query: 946 ENPNPKWPVPQDLIELQPS-------YRQWSNTNTFLKQDLYRPNLESNK---------A 989
+P K+ + + I QP+ + Q + + LY PN S+K A
Sbjct: 863 RSPISKYQLFR--IRNQPTKGNEIRFHTQKDAPDYSFQLYLYDPNRSSSKIQALVRHLKA 920
Query: 990 L----PD-KVIIFSQFLEHIHVIEQQLTVAG-----IKFAGMYSPMHSSNKIKSLDMFRH 1039
L P+ KVI+FSQF ++ +I+ +L +A KF G + + ++S +
Sbjct: 921 LHSQSPNSKVIVFSQFSSYLDIIQSELKLASEEFIVFKFDGRLNMNDRTKLLESFNQPLE 980
Query: 1040 DASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLA 1098
D LL+ A +GL+L+ +R ++M+P W S+E+Q I R HR+G + V
Sbjct: 981 DGKVAILLLSLKAGGVGLNLTTASRAYMMDPWWSPSIEDQAIDRIHRIGQNETVKVVRFI 1040
Query: 1099 MRGTVEEQMLEF 1110
M ++E +ML+
Sbjct: 1041 MENSIETKMLKI 1052
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 35/116 (30%)
Query: 165 LKLFPHQQAAVEWMLHREWNAEVLR----------------------HPL-------YID 195
L L +Q+ + WML RE +VL +PL Y
Sbjct: 362 LDLRSYQKHGLSWMLAREKELDVLEMLSNEDKLSSQSRKELENLGTMNPLWRKYKWPYAT 421
Query: 196 LATEDGF------YFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245
AT+D YFY N +G+++ GG+ DE GLGKTI L+L+
Sbjct: 422 EATQDPTQNQTEKYFYANMYNGELSLEKPVIKSSLRGGILADEMGLGKTIATLALV 477
>sp|P32849|RAD5_YEAST DNA repair protein RAD5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD5 PE=1 SV=1
Length = 1169
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 162/650 (24%), Positives = 268/650 (41%), Gaps = 113/650 (17%)
Query: 544 GLASPILGSYAAG----ETQGFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRL 599
LA PIL + G + G K A+ L+ ++ + +D FD+ +
Sbjct: 515 SLAKPILKTMIKGGILSDEMGLGKTVAAYSLV------LSCPHDSDVVDKKLFDIENTAV 568
Query: 600 ALCEP---LDSVRLYLSRATLIVVPSYLVDHWKTQIQQ-HVRPGQLHLFVW---TDHKKP 652
+ P D+ + Y S+ TLIVVP L+ W + + + P H + K
Sbjct: 569 SDNLPSTWQDNKKPYASKTTLIVVPMSLLTQWSNEFTKANNSPDMYHEVYYGGNVSSLKT 628
Query: 653 SAHSLAWDYDVVITTFNRLSAEWGRRKK-----------SPMMQVHWLRVMLDEGHTLGS 701
VV+TT+ + EW + K S + V++ R+++DEGH + +
Sbjct: 629 LLTKTKTPPTVVLTTYGIVQNEWTKHSKGRMTDEDVNISSGLFSVNFYRIIIDEGHNIRN 688
Query: 702 SLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGG 761
+T+K MA L +W+LTGTP N +L L ++KFL + + Q W
Sbjct: 689 RTTVTSKAVMA--LQGKCKWVLTGTPIIN----RLDDLYSLVKFLELDPWRQ-INYWKTF 741
Query: 762 ILRPFEAEMEEGRSRLLQ------LLHRCMISARKTDLQTIPLCIKEVTF--LNFTEEHA 813
+ PFE++ + ++ LL R K + L KEV L F++
Sbjct: 742 VSTPFESKNYKQAFDVVNAILEPVLLRRTKQMKDKDGKPLVELPPKEVVIKRLPFSKSQD 801
Query: 814 GTYNELV----VTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKV 869
Y L+ V+V+ I D LL K++ I LR CC G I
Sbjct: 802 LLYKFLLDKAEVSVKSGIARGD---------LL--KKYSTILVHILRLRQVCCHPGLIGS 850
Query: 870 TDAG-EDIQETMDVLVENG--LDPLSQ------EYAFIKYNL----------LNGGNCLR 910
D ED+ + ++ E LD L + + +F K L +
Sbjct: 851 QDENDEDLSKNNKLVTEQTVELDSLMRVVSERFDNSFSKEELDAMIQRLKVKYPDNKSFQ 910
Query: 911 HILCLDCVA--MDSEKCSLPGCG--------FLY-EMQSPEILTRPENPNPKWPVPQDLI 959
+ C C MD +K CG F Y E Q+ + L + PN + + D
Sbjct: 911 SLECSICTTEPMDLDKALFTECGHSFCEKCLFEYIEFQNSKNLGL-KCPNCRNQI--DAC 967
Query: 960 ELQPSYRQWSNTNTFLKQDLYRPNLESNK--------------ALPDKVIIFSQFLEHIH 1005
L + SN+ L+ Y P +S+K + ++V+IFSQF ++
Sbjct: 968 RLLALVQTNSNSKN-LEFKPYSPASKSSKITALLKELQLLQDSSAGEQVVIFSQFSTYLD 1026
Query: 1006 VIEQQLT------VAGI-KFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDL 1058
++E++LT VA I KF G S ++ + + + + LL + +GL+L
Sbjct: 1027 ILEKELTHTFSKDVAKIYKFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNL 1086
Query: 1059 SFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ + ++M+P W SME+Q I R HR+G T + V ++ ++EE+ML
Sbjct: 1087 TCASHAYMMDPWWSPSMEDQAIDRLHRIGQTNSVKVMRFIIQDSIEEKML 1136
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 46/119 (38%), Gaps = 37/119 (31%)
Query: 162 CMKLKLFPHQQAAVEWMLHRE----------------------------------WNAEV 187
KL+L +Q+ + WML RE W A+
Sbjct: 432 VFKLELRNYQKQGLTWMLRREQEFAKAASDGEASETGANMINPLWKQFKWPNDMSWAAQN 491
Query: 188 LRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLIL 246
L+ + EDG +FY N SG+ + GG+ DE GLGKT+ A SL+L
Sbjct: 492 LQQD---HVNVEDGIFFYANLHSGEFSLAKPILKTMIKGGILSDEMGLGKTVAAYSLVL 547
>sp|Q753V5|RAD5_ASHGO DNA repair protein RAD5 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RAD5 PE=3 SV=2
Length = 1085
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 130/586 (22%), Positives = 234/586 (39%), Gaps = 106/586 (18%)
Query: 599 LALCEPLDSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLA 658
L+L + +V+ Y + TLIVVP L+ W+ + + L+ V+ + +L
Sbjct: 497 LSLELGISTVKPYTASTTLIVVPMSLLPQWRNEFVRVNDGNGLYCEVYYAGNVSNLRTLL 556
Query: 659 WDY----DVVITTFNRLSAEWGRRKK-------SPMMQVHWLRVMLDEGHTLGSSLNLTN 707
VV+TT+ + EW + ++ + V + R++LDEGH + + T+
Sbjct: 557 VKQKSPPSVVLTTYGVVQTEWSKLQQFDYEASNEGLFSVEFFRIILDEGHNIRNRTTKTS 616
Query: 708 KLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFE 767
K MA LT+ +W+LTGTP N +L L ++KF++ E + + W + PFE
Sbjct: 617 KAVMA--LTSRRKWVLTGTPIMN----RLDDLFSLIKFMNFEPWCKID-YWRQFVSDPFE 669
Query: 768 AEMEEGRSRLLQLLHRCMISARKTDLQT------IPLCIKEVTF--LNFTEEHAGTYNEL 819
+ ++Q + ++ R +++ + L KEV + F++ AG Y
Sbjct: 670 KKDYSSALEVIQAVMGPILLRRTKNMKDEDGNPLVQLPPKEVVIEMIRFSDTEAGLYKYF 729
Query: 820 VVTVRRNILMADWNDPSHVESLLNPKQWKFRSTT---IRNLRLSCCVAGHIKVTDAGE-- 874
+ ++ ESL K ST I LR CC H K+ + +
Sbjct: 730 LSKAEHSV----------KESLARGDLLKKYSTILLHILRLRQVCC---HFKLLGSQDEN 776
Query: 875 -----------DIQETMDVLVENGLDPLSQEYAFIKY-----NLLNGGNCLRHILCLDCV 918
DI + +L E+ P S + + L+ + C C
Sbjct: 777 DEDLKNMKLINDIPDISTLLGEDSQSPGSSSEGMPDFIEDFKTKYPNSDALKDLECSICT 836
Query: 919 --------AMDSEKCSLPGC--------GFLYEMQSPEI------------LTRPENPNP 950
++ +C P C F + S I L + E+ N
Sbjct: 837 CEAISPLTSVVFTRCGHPFCESCLLEYIQFQNKKGSETICPNCRAAVESRYLLKLEDING 896
Query: 951 KW-PVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQ 1009
K PVP Y ++ + + +L+ A ++V++FSQF ++ ++E
Sbjct: 897 KLEPVP---------YSNTKKSSKIVALIRHLKHLQDTSA-NEQVVVFSQFSSYLDILEN 946
Query: 1010 QLTVAG-------IKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVT 1062
+L + KF G SN + + LL + +GL+L+ +
Sbjct: 947 ELRQSFASDICEIYKFDGRLDLKERSNVLAKFTEKSLVKMKVLLLSLKAGGVGLNLTCAS 1006
Query: 1063 RVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
F+M+P W ME+Q + R HR+G + + + + ++EE+ML
Sbjct: 1007 HAFIMDPWWSPGMEDQAMDRIHRIGQSNTVKIYRFIVENSIEEKML 1052
Score = 40.8 bits (94), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 181 REWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTIT 240
R+ + +V R Y+ L + FY N +G+ + + GG+ DE GLGKTI+
Sbjct: 410 RDTSWDVSRGTTYVSLEADIPDKFYANLHTGEFSLVKPISKSILKGGILADEMGLGKTIS 469
Query: 241 ALSLILKTQGTLADPPDGVKIIWCTHNGDPRCGYYDL 277
L+LI P K + T P G+ L
Sbjct: 470 ILALITMV-------PSDTKHLLTTAQEKPPVGHLSL 499
>sp|P79051|RHP16_SCHPO ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rhp16 PE=3 SV=2
Length = 861
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 130/604 (21%), Positives = 251/604 (41%), Gaps = 114/604 (18%)
Query: 582 YYPKTLDNLAFD--LAALRLALCEPLDSVRLYLS----RATLIVVPSYLVDHWKTQIQQH 635
Y+ K ++ +F + A + + + + ++ L LS + TL+V P + WK +I H
Sbjct: 264 YWLKRQEDSSFGGGILADEMGMGKTIQTIALLLSEPRGKPTLVVAPVVAIMQWKEEIDTH 323
Query: 636 VRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGR------------RKKSPM 683
+ + S L+ YDVV+T++N + + + + ++KS +
Sbjct: 324 TNKALSTYLYYGQARDISGEELS-SYDVVLTSYNVIESVYRKERSGFRRKNGVVKEKSLL 382
Query: 684 MQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPML 743
Q+ + R++LDE H + S N + L + + L+GTP N ++ L +L
Sbjct: 383 HQMEFYRIILDEAHGIKS--RTCNTARAVCGLRTTRKICLSGTPLQN----RIGELFSLL 436
Query: 744 KFLHEEAYG------------------------------QNQKAWDGGILRPFEAEMEEG 773
+FL + + + ++ +L+P + EG
Sbjct: 437 RFLRADPFAYYYCLQCECKSLHWRFSDRSNCDECGHKPMSHTCYFNAEMLKPIQKFGYEG 496
Query: 774 RSRL-LQLLHRCM--ISARKTDLQT-----IPLCIKEVTFLNFTEEHAGTYNELVVTVRR 825
+L + +H + I R+T L+ +P + EV F EE Y L + +R
Sbjct: 497 PGKLAFKKVHSLLKHIMLRRTKLERADDLGLPPRVVEVRKDLFNEEEEDVYQSLYMDSKR 556
Query: 826 --NILMAD---WNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETM 880
N +A+ N+ +++ L+ T +R + A H + A + ++T+
Sbjct: 557 KFNTYLAEGVVLNNYANIFQLI---------TRMRQM------ADHPDLVLASK--RKTV 599
Query: 881 DVLVENGL-----DPLSQEYAFIKYNLLNGGNCLRHILCLDCV------AMDSEKCSLPG 929
D+ + + D ++Q+ C H C CV A D E + P
Sbjct: 600 DIENQENIVCKICDEVAQDAI--------ESRC-HHTFCRLCVTEYINAAGDGENVNCPS 650
Query: 930 C--GFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESN 987
C ++ +P + E K+ L + + + S L ++LY L
Sbjct: 651 CFIPLSIDLSAPALEDFSEE---KFKNASILNRIDMNSWRSSTKIEALVEELY---LLRK 704
Query: 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALL 1047
K K I+FSQF + +I +L AG + M + +++ F +D + L
Sbjct: 705 KDRTLKSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSNDINITIFL 764
Query: 1048 MDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQ 1106
+ A + L+L+ ++VF+M+P W+ +++ Q + R HR+G RPI V TL + ++E +
Sbjct: 765 VSLKAGGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKRPIKVITLCIENSIESK 824
Query: 1107 MLEF 1110
++E
Sbjct: 825 IIEL 828
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 10/181 (5%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAW--DYDVVITTFNR 670
+RATLI+ P ++ +W Q QHV+ ++HL + + AW D+++TT+N
Sbjct: 469 TRATLIICPLSVLSNWIDQFGQHVK-SEVHLNFYVYYGPDRIRDSAWLSKQDIILTTYNI 527
Query: 671 LSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPN 730
L+ ++G + SP+ + WLRV+LDEGH + + + + + L A RW+LTGTP N
Sbjct: 528 LTHDYGTKDDSPLHSIKWLRVILDEGHAIRNP--NAQQTKAVLELEAERRWVLTGTPIQN 585
Query: 731 TPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARK 790
+ L L +L FL + + +++ W I RP E G RL L+ + K
Sbjct: 586 S----LKDLWSLLSFLKLKPF-IDREWWYRIIQRPVTTGDEGGLRRLQSLIKNITLRRTK 640
Query: 791 T 791
T
Sbjct: 641 T 641
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 70/127 (55%), Gaps = 4/127 (3%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLMD 1049
K ++ SQF + +IE L +G F + M +++S+ F++ + + LL
Sbjct: 847 KSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQRFQNTEAGSPTIMLLSL 906
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ +GL+L +RVFLM+P W+ + E+Q R HR+G + + + ++ +VEE ML+
Sbjct: 907 KAGGVGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK 966
Query: 1110 FLQDTDR 1116
+Q+T R
Sbjct: 967 -IQNTKR 972
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 167 LFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHG 226
L PHQ+ A+ WM+ RE + E+ P + E Y NT++ + + P + HG
Sbjct: 240 LLPHQKQALAWMIARENSKEL--PPFW-----EQRNDLYYNTIT-NFSVKERP--ENVHG 289
Query: 227 GMFCDEPGLGKTITALSLIL 246
G+ D+ GLGKT+TA+++IL
Sbjct: 290 GILADDMGLGKTLTAIAVIL 309
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 1
OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1
Length = 881
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 17/211 (8%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSA 673
+ TLIV P ++ W TQ+++H PG L ++++ ++ + YD+V+TT+ L+
Sbjct: 358 KTTLIVCPPSVISAWITQLEEHTVPGILKVYMYHGGERTDDVNELMKYDIVLTTYGTLAV 417
Query: 674 E--WGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNT 731
E W + SP+ ++ WLR++LDE HT+ ++ + ++ L AS RW +TGTP N
Sbjct: 418 EESW---EDSPVKKMEWLRIILDEAHTIKNA--NAQQSRVVCKLKASRRWAVTGTPIQNG 472
Query: 732 PNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKT 791
L ++ FL E + + W I RP ++G SRL L+ IS R+T
Sbjct: 473 S----FDLYSLMAFLRFEPFSI-KSYWQSLIQRPLGQGNKKGLSRLQVLM--ATISLRRT 525
Query: 792 ---DLQTIPLCIKEVTFLNFTEEHAGTYNEL 819
L +P E ++ + E Y+ +
Sbjct: 526 KEKSLIGLPPKTVETCYVELSPEERQLYDHM 556
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 4/143 (2%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHD--ASCLALLMDG 1050
K ++FSQF + + ++E L AG + M + + + F + + LL
Sbjct: 727 KSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFGNPELTGPVVLLASL 786
Query: 1051 SAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
AS G++L+ +RV+L +P W+ ++EEQ + R HR+G + + + + R ++EE++LE
Sbjct: 787 KASGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIARNSIEERVLE 846
Query: 1110 FLQ-DTDRCRRLLKEELVKPERE 1131
Q + K K ERE
Sbjct: 847 LQQKKKNLANEAFKRRQKKDERE 869
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 10/84 (11%)
Query: 162 CMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTM 221
+K +LF HQ+ + W+LHRE + E+ P + + +DG + NT++ + +
Sbjct: 226 VIKSELFAHQKEGLGWLLHREKSGEL--PPFWEE---KDGEFL--NTLTNYRSDKRPDPL 278
Query: 222 RDFHGGMFCDEPGLGKTITALSLI 245
R GG+F D+ GLGKT+T LSLI
Sbjct: 279 R---GGVFADDMGLGKTLTLLSLI 299
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 17/202 (8%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRPG-QLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLS 672
R TLI+ P ++ +W Q QH++ L+ +V+ + +L D+V+TT+N L+
Sbjct: 473 RTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIRDPALLSKQDIVLTTYNILT 532
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTP 732
++G + SP+ + WLRV+LDEGH + + + + + L A RW+LTGTP N+
Sbjct: 533 HDYGTKGDSPLHSIRWLRVILDEGHAIRNP--NAQQTKAVLDLEAERRWVLTGTPIQNS- 589
Query: 733 NSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKT- 791
L L +L FL + + +++ W I RP E G RL L+ + KT
Sbjct: 590 ---LKDLWSLLSFLKLKPF-VDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTS 645
Query: 792 --------DLQTIPLCIKEVTF 805
+L P+ I+ +T
Sbjct: 646 KIKGKPVLELPERPVFIQHITL 667
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 70/127 (55%), Gaps = 4/127 (3%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLMD 1049
K ++ SQF + +IE L +G F + M +++S+ F++ + + LL
Sbjct: 850 KSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSL 909
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ +GL+L +RVFLM+P W+ + E+Q R HR+G + + + ++ +VEE ML+
Sbjct: 910 KAGGVGLNLCAASRVFLMDPAWNPAAEDQRFDRCHRLGQKQEVIITKFIVKDSVEENMLK 969
Query: 1110 FLQDTDR 1116
+Q+T R
Sbjct: 970 -IQNTKR 975
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 10/80 (12%)
Query: 167 LFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHG 226
L PHQ+ A+ WM+ RE + E+ P + +L + Y NT++ + + P + HG
Sbjct: 240 LLPHQKQALAWMVSRENSREL---PPFWELRND----LYYNTIT-NFSEKDQP--ENVHG 289
Query: 227 GMFCDEPGLGKTITALSLIL 246
G+ D+ GLGKT+TA+++IL
Sbjct: 290 GILADDMGLGKTLTAIAVIL 309
>sp|Q6C2R8|RAD5_YARLI DNA repair protein RAD5 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=RAD5 PE=3 SV=1
Length = 1025
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 145/683 (21%), Positives = 270/683 (39%), Gaps = 138/683 (20%)
Query: 516 LLINSMTKKALTWLAKLSPDELSEMETTGLASPILGSYAAGETQGFHKIFQAFGLIRRVE 575
L + K+ LTW+ E+SE + PI + + G + F
Sbjct: 365 LELRRYQKQGLTWMIS-RETEVSEYFDNDDSGPINPLWTKVDFPGSDEKFYV-----NFS 418
Query: 576 KGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRL-YLSR---ATLIVVPSYLVDHWKTQ 631
G +PK + + + A + L + + ++ + Y R TL+V P L+ W+ +
Sbjct: 419 SGALTLKFPKQERSFSGGILADEMGLGKTISTLAMVYRDRHVGCTLVVAPMSLLWQWEQE 478
Query: 632 IQQHVRPGQLHLFVWTDHKKPSAHSL-----AWDYDVVITTFNRLSAEWGRRK------- 679
++ + L + H+K + L + +++IT+++ L + +G+ K
Sbjct: 479 CER------VGLSTYVYHEKGADIDLDELFKTYSPNILITSYHTLVSHYGQIKALGGGLD 532
Query: 680 -----------KSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPT 728
+ + H+ R++LDE H + + ++ K L A+N+W LTGTP
Sbjct: 533 RNVISETSSHERPKIFTKHFHRIVLDEAHVIKNRNTVSAK--ACCLLRATNKWALTGTPI 590
Query: 729 PNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCM--- 785
N +L L +LKFL + + W I PF+ EG+ + +C+
Sbjct: 591 HN----RLEDLFSILKFLGAAPWN-DFIYWRNFITLPFQ----EGKIVSALMTVQCILEP 641
Query: 786 ISARKTD---------LQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPS 836
I R+T L +P + + T++ Y+ ++ + ++ ++ ++
Sbjct: 642 IVLRRTKNMKQADGSPLVVLPKKTINIEKVALTDQERVIYSYVLARAQTSLQKSEASEAV 701
Query: 837 HVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLV-ENGLDPLSQEY 895
+ + T I LR SCC I +A E + + E+ L + Q+Y
Sbjct: 702 G-------RNYLNILTQILRLRQSCCDPALILRPEAEVPTDEQLQIEENESQLKSMIQQY 754
Query: 896 ------AFIKYN------------------------LLNGGNCLRHILCLDCVA----MD 921
+ +Y+ L CL H+ C+DC+A
Sbjct: 755 NDDTQTSACEYSSEIIAQLQDQSAPPECPICAEDVTKLAISKCL-HMGCVDCLADNVRFQ 813
Query: 922 SEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYR 981
K P C + P L +D+ E++ + + LK+ R
Sbjct: 814 ESKKQTPVCCIC---RQPAAL-------------KDIFEVERTGEDCKDIR--LKKLSDR 855
Query: 982 PN-------LESNKALPD--KVIIFSQFLEHIHVIEQQL---TVAGIKFAGMYSPMHSSN 1029
P + K LP K ++FSQF ++ +I+ +L + +F G S ++
Sbjct: 856 PRSSKLVALVSKLKQLPKDAKSVVFSQFTSYLDIIQTELRREKIQAFRFDGTLSRQQRTD 915
Query: 1030 KIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGAT 1089
+K+ + + ++L G +GL+L F+M+P W + E Q I R HRMG T
Sbjct: 916 VLKAFGLSKGSVLLISLKTGG---VGLNLVTANHAFIMDPWWTFAQEAQAIDRIHRMGQT 972
Query: 1090 RPIHVETLAMRGTVEEQMLEFLQ 1112
+ +HV + +VEE+ML+ Q
Sbjct: 973 KDVHVTRFIVENSVEEKMLKIQQ 995
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 165 LKLFPHQQAAVEWMLHREWNAEVLRH----------PLY--IDLATEDGFYFYVNTVSGD 212
L+L +Q+ + WM+ RE EV + PL+ +D D FYVN SG
Sbjct: 365 LELRRYQKQGLTWMISRE--TEVSEYFDNDDSGPINPLWTKVDFPGSDE-KFYVNFSSGA 421
Query: 213 IATGTAPTMRDFHGGMFCDEPGLGKTITALSLILK 247
+ R F GG+ DE GLGKTI+ L+++ +
Sbjct: 422 LTLKFPKQERSFSGGILADEMGLGKTISTLAMVYR 456
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 8/179 (4%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRPG-QLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLS 672
R TLI+ P ++ +W Q QH++ L+ +V+ + +L D+V+TT+N L+
Sbjct: 476 RTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILT 535
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTP 732
++G + SP+ + WLRV+LDEGH + + + + + L + RW+LTGTP N+
Sbjct: 536 HDYGTKGDSPLHSIRWLRVILDEGHAIRNP--NAQQTKAVLDLESERRWVLTGTPIQNS- 592
Query: 733 NSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKT 791
L L +L FL + + +++ W I RP E G RL L+ + KT
Sbjct: 593 ---LKDLWSLLSFLKLKPF-IDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKT 647
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 70/127 (55%), Gaps = 4/127 (3%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLMD 1049
K ++ SQF + +IE L +G F + M +++S+ F++ + + LL
Sbjct: 853 KSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSL 912
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ +GL+LS +RVFLM+P W+ + E+Q R HR+G + + + ++ +VEE ML+
Sbjct: 913 KAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK 972
Query: 1110 FLQDTDR 1116
+Q+ R
Sbjct: 973 -IQNKKR 978
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 167 LFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHG 226
L PHQ+ A+ WM+ RE + E+ P + E Y NT++ + + P + HG
Sbjct: 240 LLPHQKQALAWMVSRENSKEL--PPFW-----EQRNDLYYNTIT-NFSEKDRP--ENVHG 289
Query: 227 GMFCDEPGLGKTITALSLIL 246
G+ D+ GLGKT+TA+++IL
Sbjct: 290 GILADDMGLGKTLTAIAVIL 309
>sp|Q10332|YBMA_SCHPO Uncharacterized ATP-dependent helicase C582.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC582.10c PE=1 SV=1
Length = 830
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 2/125 (1%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GS 1051
K IIFSQF + +I+ L AGI F M++ + KSLD+ R D+ LL
Sbjct: 672 KTIIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRSDSGTQVLLCSLKC 731
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFL 1111
+LGL+L+ +RV L + W+ ++EEQ I R HR+G R + V L + T+EE+++E L
Sbjct: 732 GALGLNLTCASRVILCDVWWNPAIEEQAIDRVHRIGQRRDVLVYKLVVENTIEEKIVE-L 790
Query: 1112 QDTDR 1116
Q+ R
Sbjct: 791 QNLKR 795
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 32/225 (14%)
Query: 590 LAFDLAALRLALCEPLDSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDH 649
L + + L L PL + + ++TL+V P L+ W++++Q +L V+
Sbjct: 266 LGKTIQMIALILSHPLPKKKHSI-KSTLVVAPLSLIKQWESEVQTK---SKLTAIVYHGA 321
Query: 650 KKPSAHSLAWDYDVVITTFNRLSAEW---------GR---------RKKSPMMQVHWLRV 691
+ + +YDVVITT+ L +EW G+ +KK + +W R+
Sbjct: 322 SRYKLLKVIHEYDVVITTYQILVSEWVSHNTTGTDGKSPTEAKSYEKKKPSLFAFYWWRI 381
Query: 692 MLDEGHTLGSSLNLTNKLQMA-ISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEA 750
+LDE HT+ N ++K +A +L NRW LTGTP N + L ++KFLH
Sbjct: 382 ILDEAHTIK---NKSSKSALACCALQGINRWCLTGTPLQNN----VDELYSLVKFLHINP 434
Query: 751 YGQNQKAWDGGILRPF-EAEMEEGRSRLLQLLHRCMISARKTDLQ 794
+ +Q W I P + E RL LL M+ KT L+
Sbjct: 435 FN-DQSVWKDQISLPLCQGEENLVFKRLRMLLSVIMLRRTKTLLE 478
>sp|P36607|RAD5_SCHPO DNA repair protein rad5 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad8 PE=1 SV=1
Length = 1133
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDG 1050
P+KV+IFSQF + +I L + +A M + +L+ FR+D L++
Sbjct: 981 PEKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMSQQMRSTALETFRNDPDVNVLIISL 1040
Query: 1051 SAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
A +GL+L+ VF+M+P W S+E Q I R HR+G +P+ V +R TVEE+ML+
Sbjct: 1041 KAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPVFVTRYIVRDTVEERMLK 1100
Query: 1110 F 1110
Sbjct: 1101 I 1101
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 113/234 (48%), Gaps = 25/234 (10%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP-SAHSLAWDYD----VVITT 667
SR TL+V P L+D W ++ + + + ++ +KP S D ++IT+
Sbjct: 569 SRTTLVVAPMSLLDQWHSEACKVSQGTKFRSMIYYGSEKPLDLKSCVIDTSTAPLIIITS 628
Query: 668 FNRLSAEWGRRKKSP-MMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGT 726
+ L +E+ ++ S + VHW RV+LDEGH + + + T K +IS + NRW++TGT
Sbjct: 629 YGVLLSEFSQQSHSSGLFSVHWFRVVLDEGHNIRNRESKTAKACHSIS--SQNRWVITGT 686
Query: 727 PTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMI 786
P N +L L ++KF+ E + N W + P++++ ++Q + ++
Sbjct: 687 PIVN----KLDDLYSLIKFMRYEPWC-NYTYWQTFVSLPYQSKDVLKALNVVQSILEFLV 741
Query: 787 SARKTDLQ--------TIPLCIKEVTFLNFTEEHAGTYNELVV----TVRRNIL 828
R + + T+P ++ +L+F++ Y+ L TV NI+
Sbjct: 742 LRRTKETKDRNGNSIVTLPPKTVKIEYLDFSDSERKIYDSLYTKAKSTVNANIV 795
Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 165 LKLFPHQQAAVEWMLHREWNAEV-----LRHPLYIDL---------------ATEDGFYF 204
L L +Q+ A+ WM +E + HPL+ + +D +F
Sbjct: 443 LDLREYQKQALYWMCCKEEGVQSDGSAPKLHPLWSRFRFPKDSEFPEFFKCSSDDDNTHF 502
Query: 205 YVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245
YVN +G+ +M GG+ DE GLGKTI LSLI
Sbjct: 503 YVNLYTGETTMLFPNSMPYHRGGILADEMGLGKTIEVLSLI 543
>sp|O13762|YF2C_SCHPO Uncharacterized ATP-dependent helicase C17A2.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17A2.12 PE=3 SV=1
Length = 897
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 78/135 (57%), Gaps = 4/135 (2%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGS 1051
+K++++SQF +++ ++ L + I+ M ++ + KSL F +D L +L+
Sbjct: 742 EKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQRQKSLHSFNNDKDVLVMLVSLK 801
Query: 1052 A-SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEF 1110
A S+GL+L+ V L EP ++ S+E+Q I R HR+G +P+ V + T+EE+++
Sbjct: 802 AGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTVYRFITKDTIEERIVSV 861
Query: 1111 LQDTDRCRRLLKEEL 1125
+ + R+L+KE L
Sbjct: 862 QR---KKRQLVKEAL 873
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 63/344 (18%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDH----KKPSAHSLAWDYDVVITT 667
L + LIVV L+ W ++ V P + L V+ H K ++ L+ YDVV+TT
Sbjct: 299 LRKTNLIVVSVALLHQWAEELSTKVHPSK-KLSVYIHHGSTKKNLDSYELS-QYDVVLTT 356
Query: 668 FNRLSAEWGRR----KKSP----------MMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI 713
++ L+ E + +P +++ W R++LDE HT+ + L K +
Sbjct: 357 YSMLAYEMKQNDAFNNNNPATATPPPACSLLETSWYRIVLDEAHTIRNRDTLAAKC--CV 414
Query: 714 SLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWD---GGILRP---FE 767
L A RW L+GTP N + +LKFL + Y W I RP +
Sbjct: 415 KLDAKYRWCLSGTPIQN----HIDEFYSLLKFLRIKPYC----VWSLFAKDISRPLKSYR 466
Query: 768 AEMEEGRSRLLQLLHRCMISAR--KTDLQTIPLC------IKEVTFLNFTEEHAGTYNEL 819
A++ E + L++L + R +T + +P+ I+ V+ +N E YNE
Sbjct: 467 ADIVEAALKRLRILLASTVFRRTKETRVNNLPIVNLPPKTIRTVS-VNLLPEERALYNEQ 525
Query: 820 VVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVT--DAGEDIQ 877
+ + + L+ ++ + H S ++ F ++ LR CC +K + D I+
Sbjct: 526 MSSAQS--LVDNYFNNDHDLS-----RYGFLLVSLLRLRQFCCHPWLVKSSSLDNSFRIR 578
Query: 878 ETMDVLVE-NGLDPLSQEYAFIKYNLLNGGNCLRHILCLD-CVA 919
++ +V LDPL+ E + L NC +CLD C+A
Sbjct: 579 DSENVRNACKSLDPLTIE----RIATLQDFNC---SVCLDPCLA 615
>sp|P0CQ66|RAD5_CRYNJ DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=RAD5 PE=3
SV=1
Length = 1198
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMF-RHDASCLALLMD-G 1050
K ++FSQF + +IE LT GI++ M + + +++ F R L LL+
Sbjct: 1037 KALVFSQFTSFLDLIEATLTKQGIRWLRFDGTMSQAQRANTIEEFGRKTNEPLILLISLK 1096
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEF 1110
+ +GL+L+ VFLM+ W+ ++E+Q I R HR+G +P++V ++GTVE+++++
Sbjct: 1097 AGGVGLNLTMANYVFLMDTWWNEAIEQQAIDRVHRLGQNKPVYVTRYIIKGTVEKRIMKI 1156
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 30/252 (11%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHS-LAWD----YDVVITTF 668
RATL+V P L W ++++ + G ++ +VW + + LA D DV++T++
Sbjct: 594 RATLVVCPVSLAAQWHDELRKMSQQGSINSYVWYGGDRVDIEALLAGDGKERVDVIVTSY 653
Query: 669 NRLSAE---WGRRKKSP------MMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASN 719
L++E W R K P + +LR++LDE H + + L + +K L
Sbjct: 654 GTLTSEYQKWLRTKDRPNYEGGSLYDHEFLRIVLDEAHNIRNRLAMVSK--ACYELKGQR 711
Query: 720 RWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQ 779
RW LTGTP N +L L +L FL +G N + + PF + + + +
Sbjct: 712 RWALTGTPIVN----RLEDLYSLLHFLRITPWG-NYSFFRSFVTVPFLNQDHKALNVVQY 766
Query: 780 LLHRCMISARKTD-------LQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNI--LMA 830
+L C++ KT + +P E+ L F+ Y L ++ L A
Sbjct: 767 ILESCLLRREKTMRDKDGRLIVDLPPKTVEIKVLQFSRAERQIYKFLEERAKKRFIDLDA 826
Query: 831 DWNDPSHVESLL 842
D S+ S+L
Sbjct: 827 DGRAMSNYTSIL 838
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 23/102 (22%)
Query: 167 LFPHQQAAVEWMLHREWNAEVLR----HPLY--------------IDLATED-----GFY 203
L P+Q+ A+ WM RE +R HPL+ I+++ +D
Sbjct: 435 LRPYQKQALTWMNAREKGDSSVRNESLHPLWEEYLFKKDQLPGEPIEISDDDEQPDSTRK 494
Query: 204 FYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245
FY N SG+++ + GG+ D G+GKT SLI
Sbjct: 495 FYWNPYSGELSLKFPTSQNLSRGGILADAMGMGKTCMMASLI 536
>sp|P0CQ67|RAD5_CRYNB DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=RAD5 PE=3 SV=1
Length = 1198
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMF-RHDASCLALLMD-G 1050
K ++FSQF + +IE LT GI++ M + + +++ F R L LL+
Sbjct: 1037 KALVFSQFTSFLDLIEATLTKQGIRWLRFDGTMSQAQRANTIEEFGRKTNEPLILLISLK 1096
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEF 1110
+ +GL+L+ VFLM+ W+ ++E+Q I R HR+G +P++V ++GTVE+++++
Sbjct: 1097 AGGVGLNLTMANYVFLMDTWWNEAIEQQAIDRVHRLGQNKPVYVTRYIIKGTVEKRIMKI 1156
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 28/239 (11%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHS-LAWD----YDVVITTF 668
RATL+V P L W ++++ + G ++ +VW + + LA D DV++T++
Sbjct: 594 RATLVVCPVSLAAQWHDELRKMSQQGSINSYVWYGGDRVDIEALLAGDGKERVDVIVTSY 653
Query: 669 NRLSAE---WGRRKKSP------MMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASN 719
L++E W R K P + +LR++LDE H + + L + +K L
Sbjct: 654 GTLTSEYQKWLRTKDRPNYEGGSLYDHEFLRIVLDEAHNIRNRLAMVSK--ACYELKGQR 711
Query: 720 RWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQ 779
RW LTGTP N +L L +L FL +G N + + PF + + + +
Sbjct: 712 RWALTGTPIVN----RLEDLYSLLHFLRITPWG-NYSFFRSFVTVPFLNQDHKALNVVQY 766
Query: 780 LLHRCMISARKTD-------LQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMAD 831
+L C++ KT + +P E+ L F+ Y L ++ + D
Sbjct: 767 ILESCLLRREKTMRDKDGRLIVDLPPKTVEIKVLQFSRAERQIYKFLEERAKKRFIELD 825
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 23/102 (22%)
Query: 167 LFPHQQAAVEWMLHREWNAEVLR----HPLY--------------IDLATED-----GFY 203
L P+Q+ A+ WM RE +R HPL+ I+++ +D
Sbjct: 435 LRPYQKQALTWMNAREKGDSSVRNESLHPLWEEYLFKKDQLPGEPIEISDDDEQPDSTRK 494
Query: 204 FYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245
FY N SG+++ + GG+ D G+GKT SLI
Sbjct: 495 FYWNPYSGELSLKFPTSQNLSRGGILADAMGMGKTCMMASLI 536
>sp|Q4IJ84|RAD5_GIBZE DNA repair protein RAD5 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAD5 PE=3 SV=1
Length = 1154
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSA 1052
K ++FSQF + +IE LT A IKF + M + L+ F LL+ A
Sbjct: 1004 KSVVFSQFTSFLSLIEPALTRANIKFLRLDGSMAQKARAAVLNEFTEKKGFTILLLSLRA 1063
Query: 1053 S-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+GL+L+ RVF+M+P W ++E Q I R HRMG + V+ ++ +VEE+ML+
Sbjct: 1064 GGVGLNLTSAGRVFMMDPWWSFAVEAQAIDRVHRMGQEAEVQVKRFVVKESVEERMLK 1121
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 122/270 (45%), Gaps = 37/270 (13%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPS-------AHSLA-------WDY 661
TL+V P L+ W+++ ++ + G + ++ ++K S A + A Y
Sbjct: 574 TLVVAPMSLLSQWQSEAEKASKDGTMKTELYYGNEKSSNLQALCCASNAANAPDLVITSY 633
Query: 662 DVVITTFNRLSAEWGRRK-KSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNR 720
VV++ F+ L+A G + + + + + R+++DE H + + + T+K IS A++R
Sbjct: 634 GVVLSEFSSLAARNGDKSFHNGLFSLRFFRIIIDEAHHIKNRSSKTSKACYEIS--ATHR 691
Query: 721 WLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQL 780
W LTGTP N +L L +++FL E + N W I PFE+ ++Q
Sbjct: 692 WALTGTPIVN----KLEDLFSLVRFLGVEPWN-NFSFWRTFITVPFESGDFMRALDVVQT 746
Query: 781 LHRCMISARKTDLQTI---PLCI---KEVTFLN--FTEEHAGTYNELVVTVRRNILMADW 832
+ ++ R D++T PL + K++ +N +E YN + +R
Sbjct: 747 VLEPLVLRRTKDMKTPDGEPLVLLPPKQIEIVNVELSETERDVYNYIFNKAKRTF----- 801
Query: 833 NDPSHVESLLNPKQWKFRSTTIRNLRLSCC 862
+VE+ K + I LR SCC
Sbjct: 802 --SQNVEAGTVMKAFTTIFAQILRLRQSCC 829
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 17/98 (17%)
Query: 165 LKLFPHQQAAVEWMLHREWNA----EVLRHPLYI------------DLATEDG-FYFYVN 207
+ L +Q+ A+ WM+ +E + E L HPL+ DL +G FYVN
Sbjct: 436 MTLRKYQKQALHWMMAKEKDEKSHREPLMHPLWEQYEWPLKDVDENDLPQIEGQSKFYVN 495
Query: 208 TVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245
SGD++ + GG+ DE GLGKTI LSL+
Sbjct: 496 PYSGDLSLDFPVQEQHCLGGILADEMGLGKTIQMLSLV 533
>sp|Q6CJM4|RAD5_KLULA DNA repair protein RAD5 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAD5 PE=3 SV=1
Length = 1114
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 88/160 (55%), Gaps = 10/160 (6%)
Query: 611 YLSRATLIVVPSYLVDHWKTQIQQHVR--PGQLHLFVWTDHKKPSAHSLAWDY-DVVITT 667
Y R TLIVVP L++ W+++ ++ + + ++ + K A+ L + V+ITT
Sbjct: 541 YAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIITT 600
Query: 668 FNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTP 727
+ + +E+GR S + V + R++LDEGHT+ + T+K I+L +S +W+LTGTP
Sbjct: 601 YGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSK--AVIALRSSRKWILTGTP 658
Query: 728 TPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFE 767
N +L L +++FL+ E + + W + PFE
Sbjct: 659 IIN----RLDDLFSLVQFLNLEPWS-HINYWKRYVSVPFE 693
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 13/127 (10%)
Query: 992 DKVIIFSQFLEHIHVIEQQL-------TVAGIKFAGMYSPMHSSNKIKSLDMFR-HDASC 1043
+++I+FSQF + ++E +L V KF G + + + L+ F D SC
Sbjct: 958 EQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGR---LDMKERTRILEQFHDKDLSC 1014
Query: 1044 LALLMDG--SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101
+ LL+ + +GL+L+ +R F+M+P W ME+Q I R HR+G + + V +
Sbjct: 1015 IKLLLLSLKTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDN 1074
Query: 1102 TVEEQML 1108
+VEE+ML
Sbjct: 1075 SVEEKML 1081
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 24/107 (22%)
Query: 163 MKLKLFPHQQAAVEWMLHREWN--------AEV-------------LRHPLYIDLAT--- 198
KL+L +Q+ ++ WML RE+ AEV R P T
Sbjct: 392 FKLQLRRYQKQSLSWMLKREYEYSHLSEKAAEVSIDGNSMNPLWKKFRWPSNSKQGTPNH 451
Query: 199 EDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245
ED +FY N +G+ + +GG+ DE GLGKTI+AL+LI
Sbjct: 452 EDDCFFYANLYTGEFSIEKPVIKTIINGGILADEMGLGKTISALALI 498
>sp|O60177|YG42_SCHPO Uncharacterized ATP-dependent helicase C23E6.02
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.02 PE=3 SV=1
Length = 1040
Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGS 1051
DK++IFSQF+ + + GIK+ + ++ + ++L F D + LL+
Sbjct: 884 DKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAERNQALINFEVDPNVRVLLISLK 943
Query: 1052 A-SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEF 1110
A ++GL+L+ V +++P W+ +EEQ + RAHR+G +P+++ + T+EE++L
Sbjct: 944 AGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEERVLAL 1003
Query: 1111 LQDTDRCRRLLKEEL 1125
DR R L+ L
Sbjct: 1004 ---QDRKRELIDSAL 1015
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 29/182 (15%)
Query: 590 LAFDLAALRLALCEPLDSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDH 649
L + AL L + P +S + + TLI+ P L+ W +I + P V+ H
Sbjct: 420 LGKTVQALALLVTRPPESKSV---KTTLIITPVSLLQQWHNEILTKIAPSH-RPTVYIHH 475
Query: 650 KKPSAHSLA---WDYDVVITTFNRLSAEWGRR---KKS-------------PMMQVHWLR 690
H +A YD+V+TT+N ++ E+ + KS P + W R
Sbjct: 476 GSSKKHKIAEQLMSYDIVLTTYNVIAYEFKNKMAYDKSIEDNAPIKKFEHLPFFEAEWYR 535
Query: 691 VMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEA 750
V+LDE T+ + L + L ++ RW L+GTP N + ++KFL +
Sbjct: 536 VILDEAQTIKNRNTLAAR--GCCLLESTYRWCLSGTPMQNG----VEEFYSLIKFLRIKP 589
Query: 751 YG 752
Y
Sbjct: 590 YS 591
>sp|Q5NC05|TTF2_MOUSE Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1
SV=2
Length = 1138
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 29/156 (18%)
Query: 610 LYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFN 669
++ S TLIV P+ L+ HWK ++++ V +L ++++ + + YD+VITT++
Sbjct: 614 VFTSSGTLIVCPASLIHHWKNEVEKRVTSNRLRIYLYHGPNRSRHAKVLSTYDIVITTYS 673
Query: 670 RLSAEWGRRKK---------------SPMMQVHWLRVMLDEGHTLGSSLNLTN-KLQMAI 713
L+ E K+ +P++QV W R++LDE H N+ N ++Q +I
Sbjct: 674 LLAKEIPTTKQEGEVPGANLSVEGTSAPLLQVVWARIILDEAH------NVKNPRVQTSI 727
Query: 714 S---LTASNRWLLTGTPTPNTPNSQLSHLQPMLKFL 746
+ L A RW +TGTP N L + ++KFL
Sbjct: 728 AVCKLQAQARWAVTGTPIQNN----LLDMYSLMKFL 759
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDG-S 1051
K +I SQ+ + V+ L + +A + ++ ++ ++ F H +L+ +
Sbjct: 987 KSVIVSQWTSMLQVVALHLKKNRLTYATIDGSVNPKQRMDLVEAFNHSQGPQVMLISLLA 1046
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEF 1110
+GL+L+ +FL++ W+ S+E+Q R +R+G + + + GTVEE++L+
Sbjct: 1047 GGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQKKDVVIHRFVCEGTVEEKILQL 1105
>sp|Q9UNY4|TTF2_HUMAN Transcription termination factor 2 OS=Homo sapiens GN=TTF2 PE=1
SV=2
Length = 1162
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 29/155 (18%)
Query: 611 YLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNR 670
+ S TLI+ P+ L+ HWK ++++ V +L ++++ + S + YD+VITT++
Sbjct: 639 FTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARVLSTYDIVITTYSL 698
Query: 671 LSAEWGRRKK---------------SPMMQVHWLRVMLDEGHTLGSSLNLTN-KLQMAIS 714
++ E K+ +P++++ W R++LDE H N+ N ++Q +I+
Sbjct: 699 VAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAH------NVKNPRVQTSIA 752
Query: 715 ---LTASNRWLLTGTPTPNTPNSQLSHLQPMLKFL 746
L A RW +TGTP N L + +LKFL
Sbjct: 753 VCKLQACARWAVTGTPIQNN----LLDMYSLLKFL 783
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 973 TFLKQDLYRPNLESNK--------------ALPDKVIIFSQFLEHIHVIEQQLTVAGIKF 1018
TF K +L+ ES K + K +I SQ+ + V+ L G+ +
Sbjct: 977 TFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTY 1036
Query: 1019 AGMYSPMHSSNKIKSLDMFRHDASCLALLMDG-SASLGLDLSFVTRVFLMEPIWDRSMEE 1077
A + ++ ++ ++ F H +L+ + +GL+L+ +FL++ W+ S+E+
Sbjct: 1037 ATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLED 1096
Query: 1078 QVISRAHRMGATRPIHVETLAMRGTVEEQMLEF 1110
Q R +R+G + + + GTVEE++L+
Sbjct: 1097 QACDRIYRVGQQKDVVIHRFVCEGTVEEKILQL 1129
>sp|P41447|GTA_NPVAC Probable global transactivator OS=Autographa californica nuclear
polyhedrosis virus GN=GTA PE=3 SV=1
Length = 506
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 102/212 (48%), Gaps = 22/212 (10%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRL 671
L TLIV P L++HW T+ ++H L+ + +K A ++ Y +V+TT++ L
Sbjct: 77 LQLKTLIVCPLSLINHWVTENKKH----DLNFNILKYYKSLDADTVE-HYHIVVTTYDVL 131
Query: 672 SAEWG---RRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPT 728
A + + K+S + W RV+LDE H + + T A +LTA+NRW +TGTP
Sbjct: 132 LAHFKLIKQNKQSSLFSTRWHRVVLDEAHIIKNCK--TGVHNAACALTATNRWCITGTPI 189
Query: 729 PNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISA 788
N S M+ FL + N + W + + +R+ ++ + ++
Sbjct: 190 HNKHWDMYS----MINFLQCRPFN-NPRVW------KMLNKNNDSTNRIKSIIKKIVLKR 238
Query: 789 RKTDLQT-IPLCIKEVTFLNFTEEHAGTYNEL 819
K+++ + IP E +NF EE Y++L
Sbjct: 239 DKSEISSNIPKHTVEYVHVNFNEEEKTLYDKL 270
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 992 DKVIIFSQFLEHIHVIE---QQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC---LA 1045
DK+I+ SQ++E++ + E +Q +A + + G + ++I + F A+ +
Sbjct: 355 DKIILVSQWVEYLKIFENFFKQKNIATLMYTG---QLKVEDRILAETTFNDAANTQHRIL 411
Query: 1046 LLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHV 1094
LL +GL+L + ++EP W+ +E Q R RMG T+ +V
Sbjct: 412 LLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYV 460
>sp|Q6FY76|RAD5_CANGA DNA repair protein RAD5 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAD5 PE=3 SV=1
Length = 1151
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 8/133 (6%)
Query: 992 DKVIIFSQFLEHIHVIEQQLT-------VAGIKFAGMYSPMHSSNKIKSLDMFRHDASCL 1044
++V++FSQF ++ ++E QL + KF G S + ++ + + +
Sbjct: 994 EQVVVFSQFSSYLDILESQLNEVYSSNKLKVYKFDGRLSLKERTAVLEDFKVKDYAVQKV 1053
Query: 1045 ALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104
LL + +GL+L+ + F+M+P W SME+Q I R HR+G T + V + G++E
Sbjct: 1054 LLLSLKAGGVGLNLTCASYAFMMDPWWSPSMEDQAIDRIHRIGQTNSVKVIRFVIDGSIE 1113
Query: 1105 EQMLEFLQDTDRC 1117
E+ML +QD R
Sbjct: 1114 EKMLR-IQDRKRT 1125
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 106/246 (43%), Gaps = 35/246 (14%)
Query: 544 GLASPILGSYAAG----ETQGFHKIFQAFGLIR---RVEKGITRWYYPKTLDNLAFDLAA 596
L P + S+ G + G K A L+ + E ++ + + NL+ D
Sbjct: 496 SLERPTMNSFKNGGILSDEMGLGKTISALSLVLMRPKDEHTTSQSLFHQESSNLSSDDV- 554
Query: 597 LRLALCEPLDSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHS 656
+ + EP R Y + TLI+VP L+ W+ + + L ++ S S
Sbjct: 555 --IEIKEP---ERSYAYKTTLIIVPMSLLTQWRDEFDKVNNNAGLTCELYYGGNVSSLKS 609
Query: 657 LAWDYD----VVITTFNRLSAEWGRRKK-----------SPMMQVHWLRVMLDEGHTLGS 701
L VV+TT+ + EW + K S + + + R++LDEGHT+ +
Sbjct: 610 LLIKRKNPPTVVLTTYGIVQNEWTKLSKDGTNIRSLGRTSGIFSIEFFRIILDEGHTIRN 669
Query: 702 SLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGG 761
+T+K + L++ RW+LTGTP N +L L ++KFL E + Q W
Sbjct: 670 KSTITSK--AVLELSSKYRWILTGTPIIN----RLDDLYSLVKFLKLEPWSQ-IGYWKQF 722
Query: 762 ILRPFE 767
I PFE
Sbjct: 723 ITNPFE 728
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 35/137 (25%)
Query: 144 RIAATCRHLRCLAASIMP--CMKLKLFPHQQAAVEWMLHREW------------NAEVLR 189
+ + + L L + P +K++L +Q+ + WML RE + L
Sbjct: 393 KATQSSKQLNSLIPTTPPPELVKVELRKYQKQGLTWMLRREGISIGHDNEDKSEDDTTLL 452
Query: 190 HPLYI-------------------DLATEDGFYFYVNTVSGDIATGTAPTMRDF-HGGMF 229
+PL+ D + +FY N +G+ + PTM F +GG+
Sbjct: 453 NPLWRQFQWPRNMSWHNQSTGSENDNSNPKLIFFYGNLHTGEFSL-ERPTMNSFKNGGIL 511
Query: 230 CDEPGLGKTITALSLIL 246
DE GLGKTI+ALSL+L
Sbjct: 512 SDEMGLGKTISALSLVL 528
>sp|Q149N8|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1
SV=2
Length = 1683
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 127/291 (43%), Gaps = 64/291 (21%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP---SAHSLAWDYDVVITTFN 669
+RATLI+ PS + W +I +HVR L + V+ KK H LA + D+VI T++
Sbjct: 715 TRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLA-EQDIVIITYD 773
Query: 670 RLSAEW------------GRRKK---------SPMMQVHWLRVMLDEGHTLGSSLNLTNK 708
L +E GRR + SP++ V W R+ LDE +
Sbjct: 774 VLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECP--TVKA 831
Query: 709 LQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPF-E 767
+MA L+ NRW ++GTP L L ++ FL E Y W + RP+ +
Sbjct: 832 AEMAQRLSGINRWCISGTPV----QRGLEDLFGLVVFLGIEPYCVKH-WWVRLLYRPYCK 886
Query: 768 AEMEEGRSRLLQLLHRCMISARK--TDLQTIPLCIKEVTFLNFT--------EEHAGTYN 817
+ S + ++L R SA+K D IP +E+ +L+F+ +H
Sbjct: 887 KNPQHLYSFIAKILWR---SAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQ 943
Query: 818 ELVVTVRRNILMADWN------DPSHVESLLNPKQWKFRSTTIRNLRLSCC 862
++VV +R+ ++DW D V S+L P + LR +CC
Sbjct: 944 DVVVKLRK---ISDWALKLSSLDRRTVTSILYP---------LLRLRQACC 982
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 12/129 (9%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKS----LDMFRHDASCLALLM 1048
K ++FS + + + +I + LT ++FA + +++K+ L F+ D LL+
Sbjct: 1530 KALVFSTWQDVLDIISKALTDNNMEFAQI-------SRVKTFQENLSAFKRDPQINILLL 1582
Query: 1049 D-GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
+ S GL + T V L+EPI + + E Q I R HR+G T+P V ++ T+EE+M
Sbjct: 1583 PLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERM 1642
Query: 1108 LEFLQDTDR 1116
L+ +R
Sbjct: 1643 QAMLKTAER 1651
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 34/167 (20%)
Query: 161 PCMKLKLFPHQQAAVEWMLHREW-----NAEVLRHPLYIDLATEDGFYFYVNTVSGDIAT 215
P + L P+Q+ AV WML +E E H L+ ++ T +G Y N +G I
Sbjct: 298 PALIPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGCIIR 357
Query: 216 GTAPTMRDFHGGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWCTHNGDPRCGYY 275
+ GG+ DE GLGKT+ L+LIL TH
Sbjct: 358 EYPNSGPQLLGGILADEMGLGKTVEVLALIL------------------THTRQ------ 393
Query: 276 DLSGDKLT-----CNNMCLGKRTFSQNARRRQLSVGKFTPMDDLKCP 317
D+ D LT N + F ++ ++ +F P + ++CP
Sbjct: 394 DVKQDALTLPEGKVVNYFIPSHYFGGKLKKTEIQNIEFEPKEKVQCP 440
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 77/151 (50%), Gaps = 11/151 (7%)
Query: 959 IELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKF 1018
+EL+ S+ S +T K LY L+ N+ P KV++FSQ+L+ + V+ + GI F
Sbjct: 1178 MELKESF--GSKIDTISKHLLY---LKHNELYP-KVVVFSQWLDVLDVLHKSFEANGIVF 1231
Query: 1019 AGMYSPMHSSNKIKSLDMFRHDASCLALLMDG-SASLGLDLSFVTRVFLMEPIWDRSMEE 1077
+K L F+ + S L + S S GL L+ T VF+ EP+ + +E
Sbjct: 1232 IRF----DGKSKNTCLKRFKEERSLQVLTLHARSQSSGLTLTNATHVFMCEPLLNSGIEM 1287
Query: 1078 QVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
Q ISR HR+G TRP V + TVE +L
Sbjct: 1288 QAISRVHRIGQTRPTFVYYYIVEDTVEGHIL 1318
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 22/134 (16%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPS---AHSLAWDYDVVITTFN 669
S+ATLI+ PS ++D W ++I HV L +F + +K + + + D D+V+T+++
Sbjct: 330 SKATLIITPSTILDQWLSEIDLHV--PSLKVFHYQGIRKSNGLKSAKIFLDCDIVVTSYS 387
Query: 670 RLSAEWGRRK---------------KSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS 714
L E + KSP++ V W R+ +DE + +S +N QM
Sbjct: 388 DLRFELLYTESHSRTLRHEKRHVSPKSPLIDVCWWRICVDEAQMVETS--QSNVAQMIYR 445
Query: 715 LTASNRWLLTGTPT 728
+ N W ++GTP
Sbjct: 446 IPRVNCWTVSGTPV 459
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 149 CRHLRCLAASIMPCMKLKLFPHQQAAVEWMLHREWNAEVLRHPL----YIDLATEDGFYF 204
+ LR S P + +L P Q +EWM RE + + L Y + D
Sbjct: 200 AKSLRFANVSRDPRLSSELLPFQMRVLEWMKRREEEKFLTSNDLPPLWYHCKSLFDDRMV 259
Query: 205 YVNTVSGDIATGTAPTMR----DFHGGMFCDEPGLGKTITALSLILKTQ 249
YVN V G + T D GG+ DE G+GKT+ L L+L Q
Sbjct: 260 YVNHVYGYMTFSKEKTYLLASGDIRGGILADEMGMGKTLEVLGLVLHHQ 308
>sp|Q6BIP2|RAD5_DEBHA DNA repair protein RAD5 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD5 PE=3
SV=2
Length = 1190
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 67/126 (53%), Gaps = 7/126 (5%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTV------AGIKFAGMYSPMHSSNKIKSLDMFRHDASCLA 1045
++V++FSQF ++ +IE +L + KF G + +++ +H+ +
Sbjct: 1032 EQVVVFSQFSSYLDIIENELKIQISNDFVVYKFDGRLNMNERQKILENFSSQKHENKVMI 1091
Query: 1046 LLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104
LL+ A +GL+L+ +R F+M+P W S+E+Q I R HR+G + V M ++E
Sbjct: 1092 LLLSLKAGGVGLNLTTASRAFMMDPWWSPSVEDQAIDRLHRIGQNSNVKVTRFIMADSIE 1151
Query: 1105 EQMLEF 1110
+ML+
Sbjct: 1152 TKMLKI 1157
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 79/180 (43%), Gaps = 25/180 (13%)
Query: 605 LDSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVW------TD-------HKK 651
L+ +Y S+ TLI+VP L+ W+ + + F++ TD KK
Sbjct: 573 LEDKTIYASKTTLIIVPMSLLSQWQKEFDKANNNSNHKCFIYYGDSATTDLSPVLCNKKK 632
Query: 652 PSAHSLAWDYDVVITTFNRLSAEW---GRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNK 708
+ Y V+ F R+S G K + V + R++LDEGH + N T K
Sbjct: 633 DIPIVMITTYGTVLNEFTRISNRRDAKGFLPKIGLFSVKFFRIVLDEGHNIR---NRTAK 689
Query: 709 LQMAISLTASNR-WLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFE 767
AI SNR W+LTGTP N +L L ++KFL E + N W + PFE
Sbjct: 690 TSKAIYEILSNRKWVLTGTPVIN----RLDDLYSLVKFLELEPWS-NFSYWKTFVTLPFE 744
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 200 DGFYFYVNTVSGDIATGTAPTMRDF-HGGMFCDEPGLGKTITALSLI 245
D YFY N +G+++ T P +R GG+ DE GLGKTI+ L+LI
Sbjct: 513 DDNYFYANMYNGELSL-TKPVIRSMVKGGILADEMGLGKTISTLALI 558
>sp|P31244|RAD16_YEAST DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD16 PE=1 SV=1
Length = 790
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 75/137 (54%), Gaps = 4/137 (2%)
Query: 975 LKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSL 1034
L ++LY+ L SNK K I+FSQF + ++E +L AG + + M + + +++
Sbjct: 624 LVEELYK--LRSNKRTI-KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETI 680
Query: 1035 DMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIH 1093
F ++ C L+ A + L+L ++VF+++P W+ S+E Q R HR+G RP+
Sbjct: 681 KYFMNNIQCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQYRPVK 740
Query: 1094 VETLAMRGTVEEQMLEF 1110
+ + ++E +++E
Sbjct: 741 ITRFCIEDSIEARIIEL 757
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 19/144 (13%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSA-- 673
+L+V P+ + WK +I+QH + GQL ++++ + + YDVV+TT+ L +
Sbjct: 233 SLVVAPTVALMQWKNEIEQHTK-GQLKIYIYHGASRTTDIKDLQGYDVVLTTYAVLESVF 291
Query: 674 ---EWGRRKKSPMMQ-------VHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLL 723
+G R+K+ + + + + RV+LDE H + +N + +L RW L
Sbjct: 292 RKQNYGFRRKNGLFKQPSVLHNIDFYRVILDEAHNIKDR--QSNTARAVNNLKTQKRWCL 349
Query: 724 TGTPTPNTPNSQLSHLQPMLKFLH 747
+GTP N ++ + +++FL+
Sbjct: 350 SGTPLQN----RIGEMYSLIRFLN 369
>sp|Q4PGG5|RAD5_USTMA DNA repair protein RAD5 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=RAD5 PE=3 SV=1
Length = 1387
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 29/195 (14%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPS--AHSLAWDYDVVITTFNRL 671
+A+L+V P L+ W+ ++ + PG L ++ K A + DVVIT++ L
Sbjct: 737 KASLVVAPMSLIGQWRDELIRASAPGSLTPVLYYADTKGDLLAQLESGKVDVVITSYGTL 796
Query: 672 SAEWGR------------RKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI----SL 715
E+ R +P+ + WLRV+LDE H N+ N+ M L
Sbjct: 797 VTEYRRFLDGGGASNRHLSVSAPLYCIDWLRVILDEAH------NIKNRSTMNARACCDL 850
Query: 716 TASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRS 775
+ RW LTGTP N +L+ L +LKFL E +G + ++ + +PF+A+ +
Sbjct: 851 VSRRRWALTGTPIIN----RLTDLFSLLKFLRVEPWG-DFSFFNSFVCKPFQAKSTKALD 905
Query: 776 RLLQLLHRCMISARK 790
+ +L ++ K
Sbjct: 906 VVQVILESVLLRREK 920
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS----CLALLM 1048
K +IFSQF + +IE LT F + + K + F+ + L L+
Sbjct: 1229 KGVIFSQFTSFLDLIEPVLTRYRFHFLRLDGSTPQKVRDKLVLEFQSPSPTNHVVLFLIS 1288
Query: 1049 DGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ +GL+L+ +++L++ W+ S+E Q I R HR G T P+ V ++ ++E+++L
Sbjct: 1289 LKAGGVGLNLTAANKIWLLDFWWNSSIENQAIDRIHRFGQTSPVSVFRYIIKDSIEDRIL 1348
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 204 FYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245
FY N +GD++ + GG+ DE GLGKTI SL+
Sbjct: 631 FYFNPYTGDLSLDFQRASKGSRGGILADEMGLGKTIMVASLL 672
>sp|Q9NRZ9|HELLS_HUMAN Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1
Length = 838
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 97/460 (21%), Positives = 188/460 (40%), Gaps = 66/460 (14%)
Query: 663 VVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS-LTASNRW 721
VVIT+F E R ++ + +W +++DEGH + N+ +L + A N+
Sbjct: 328 VVITSF-----EIAMRDRNALQHCYWKYLIVDEGHRIK---NMKCRLIRELKRFNADNKL 379
Query: 722 LLTGTPTPNTPNSQLSHLQPMLKFLHEEAYG--QNQKAWDGGILRPFEAE---MEEGRSR 776
LLTGTP N LS L +L FL + + ++ ++W AE +E
Sbjct: 380 LLTGTPLQNN----LSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQN 435
Query: 777 LLQLLHRCM----ISARKTDLQ-TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMAD 831
+L +LH+ + + K+D+ +P + V + +++ Y +V N+ +
Sbjct: 436 VLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSS 495
Query: 832 WNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPL 891
+ + PK+ +S + +D ++ L+ +
Sbjct: 496 EKETIELSPTGRPKRRTRKSINYSKI----------------DDFPNELEKLISQIQPEV 539
Query: 892 SQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENP-NP 950
+E A ++ N+ L L + M KC C P ++ P +P
Sbjct: 540 DRERAVVEVNIPVESEV---NLKLQNIMMLLRKC----CN------HPYLIEYPIDPVTQ 586
Query: 951 KWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQ 1010
++ + ++L+ +N+ FL D P L K KV++FSQ + ++
Sbjct: 587 EFKIDEELV---------TNSGKFLILDRMLPEL---KKRGHKVLLFSQMTSMLDILMDY 634
Query: 1011 LTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEP 1069
+ F+ + M S + K++ F D L+ A LG++L+ V + +
Sbjct: 635 CHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDS 694
Query: 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
W+ + Q R HR+G T+P+ V L T++++++E
Sbjct: 695 DWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVE 734
>sp|Q7TPQ3|SHPRH_MOUSE E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1
SV=1
Length = 1674
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 122/291 (41%), Gaps = 64/291 (21%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP---SAHSLAWDYDVVITTFN 669
+RATLI+ PS + W +I +HVR L + V+ KK H LA + D+VI T++
Sbjct: 706 TRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKHGFLQPHFLA-EQDIVIITYD 764
Query: 670 RLSAEW------------GRRKK---------SPMMQVHWLRVMLDEGHTLGSSLNLTNK 708
L +E GRR + SP++ V W R+ LDE +
Sbjct: 765 VLRSELNYVNIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMV--ECPTVKA 822
Query: 709 LQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEA 768
+MA L+ NRW ++GTP L L ++ FL E Y W + P+
Sbjct: 823 AEMAQRLSGINRWCISGTPV----QRGLEDLFGLVVFLGIEPYCVKH-WWIRLLYHPY-- 875
Query: 769 EMEEGRSRLLQLLHRCMISARKTDL---QTIPLCIKEVTFLNFT--------EEHAGTYN 817
++ L + + M + K D+ IP +E+ +L+F+ +H
Sbjct: 876 -CKKNPQHLYSFIAKIMWRSAKKDVIDQIQIPPQTEEMHWLHFSPVERHFYHRQHEVCCQ 934
Query: 818 ELVVTVRRNILMADWN------DPSHVESLLNPKQWKFRSTTIRNLRLSCC 862
+ +V +R+ ++DW D V S+L P + LR +CC
Sbjct: 935 DAIVKLRK---ISDWALKLSSLDRRTVSSILYP---------LLRLRQACC 973
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 12/129 (9%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKS----LDMFRHDASCLALLM 1048
K ++FS + + + +I + LT ++F + ++IK+ L F++D LL+
Sbjct: 1521 KALVFSTWQDVLDIISKALTDNNMEFTQI-------SRIKTFQENLSAFKYDPHINILLL 1573
Query: 1049 D-GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
+ S GL + T V L+EPI + + E Q I R HR+G T+P V ++ T+EE+M
Sbjct: 1574 PLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERM 1633
Query: 1108 LEFLQDTDR 1116
L+ +R
Sbjct: 1634 QAMLKTAER 1642
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 161 PCMKLKLFPHQQAAVEWMLHREW-----NAEVLRHPLYIDLATEDGFYFYVNTVSGDIAT 215
P + L P+Q+ AV WML +E A+ H L+ ++ T DG Y N +G I
Sbjct: 293 PALIPVLRPYQREAVNWMLQQEQFRSAPPADNSLHFLWREIVTPDGLKLYYNPYTGCIIR 352
Query: 216 GTAPTMRDFHGGMFCDEPGLGKTITALSLIL 246
GG+ DE GLGKT+ L+LIL
Sbjct: 353 DFPHAGPQLLGGILADEMGLGKTVEVLALIL 383
>sp|Q9P793|MIT1_SCHPO Chromatin remodeling factor mit1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mit1 PE=1 SV=1
Length = 1418
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 993 KVIIFSQFLEHIHVIE---QQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD 1049
++++FSQF++ + ++E + +A +F G S M + I S + + SC LL
Sbjct: 889 RILLFSQFIQQLDILEDWFEYKNIAYARFDGASSEMERQSAIDSFNAPNSELSCF-LLST 947
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ +G++L+ V +++P ++ + Q I+RAHR G + + V L R +VEE++++
Sbjct: 948 RAGGVGINLASADTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVFVLTTRDSVEEKIIQ 1007
Query: 1110 FLQDTDRCRRLLKEEL 1125
Q L+ E L
Sbjct: 1008 NAQKKLVLDHLIVESL 1023
>sp|Q7S1P9|RAD5_NEUCR DNA repair protein rad-5 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rad-5
PE=3 SV=2
Length = 1222
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 118/270 (43%), Gaps = 37/270 (13%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP--------------SAHSLAWDY 661
TL+V P L+ W+++ + + G ++ +K + + Y
Sbjct: 636 TLVVAPMSLLAQWQSEAENASKEGTFKTMMYYGAEKNVDLVTMCCEANAANAPDVIITSY 695
Query: 662 DVVITTFNRLSAEWGRRKKS-PMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNR 720
VV++ F +L+ + G R S + +++ RV+LDE H + + T++ I+ A +R
Sbjct: 696 GVVLSEFTQLATKNGDRLSSRGLFSLNFFRVILDEAHNIKNRQAKTSRACYEIA--AEHR 753
Query: 721 WLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQL 780
W+LTGTP N +L L +++FL E + N W I PFE++ ++Q
Sbjct: 754 WVLTGTPIVN----RLEDLFSLVRFLRVEPWN-NFSFWRTFITVPFESKNFVRALDVVQT 808
Query: 781 LHRCMISARKTDLQT------IPLCIK--EVTFLNFTEEHAGTYNELVVTVRRNILMADW 832
+ ++ R D++T +PL K E+ + +E Y+ + +R +
Sbjct: 809 VLEPLVMRRTKDMKTPDGQFLVPLPPKHIEIVDIELSEPERAVYDYVFNRAKRTLF---- 864
Query: 833 NDPSHVESLLNPKQWKFRSTTIRNLRLSCC 862
D +++ K + I LR SCC
Sbjct: 865 -DNMQAGTVM--KAFTSIFAQILRLRQSCC 891
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRH-DASCLALLMDGS 1051
K ++ SQF + +I LT I F + M + L F+ + C+ LL +
Sbjct: 1070 KSLVISQFTSFLSLISSALTRHKISFLRLDGSMSQKARAAVLTEFQSTNKFCVLLLSLKA 1129
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+GL+L+ RV++M+P W ++E Q I R HRMG + V ++ +VE +ML
Sbjct: 1130 GGVGLNLTSAKRVYMMDPWWSFAVEAQAIDRVHRMGQEDEVRVYRFIVKQSVEMRML 1186
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 165 LKLFPHQQAAVEWMLHREWNA-----EVLRHPLYIDLA-------------TEDGFYFYV 206
+ L P+Q+ ++ WML +E N E HPL+ + D FYV
Sbjct: 497 MTLRPYQKQSLYWMLAKEKNQRTEDRETSMHPLWEEYVWPTKDHDDKDLPVVPDQPCFYV 556
Query: 207 NTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245
N SGD++ + GG+ DE GLGKTI LSLI
Sbjct: 557 NPYSGDLSLDFPKQEQHCLGGILADEMGLGKTIQMLSLI 595
>sp|Q08562|ULS1_YEAST ATP-dependent helicase ULS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ULS1 PE=1 SV=1
Length = 1619
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 126/618 (20%), Positives = 231/618 (37%), Gaps = 150/618 (24%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRP-GQLHLFVWT---DHKKPSAHSLAWDYDVVITTFN 669
+ LIV P ++ WK +++ V+ + F++ + K LA YD V+ ++
Sbjct: 994 KTNLIVAPVSVLRVWKGELETKVKKRAKFTTFIFGGSGNGKVKHWRDLAR-YDAVLVSYQ 1052
Query: 670 RLSAEW---------GRRKKSPMM----------------------QVHWLRVMLDEGHT 698
L+ E+ G + + P + + R++LDEG
Sbjct: 1053 TLANEFKKHWPKKLDGEQNQLPAVPHIQALNRLKTSNEYYSPFFCNDSTFYRILLDEGQN 1112
Query: 699 LGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQK-A 757
+ + +K ++ RW+L+GTP N+ + L +++FL Y + Q+
Sbjct: 1113 IKNKNTRASK--ACCTINGMYRWVLSGTPIQNS----MDELYSLIRFLRIPPYHKEQRFK 1166
Query: 758 WDGGIL----RPFEAEMEEGRSRLLQ---LLHRCMISARKTD------LQTIPLCIKEVT 804
D G + ++ + E+ ++ L + LL+ M+ K D L +P I EV
Sbjct: 1167 LDIGRFFQRNKQYQYDNEDRKNALRKVRVLLNAIMLRRSKADKIDGKPLLELPPKIVEVD 1226
Query: 805 FLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRS--TTIRNLRLSCC 862
E Y L +N +A + L N + + S T + LR +CC
Sbjct: 1227 ESRLKGEELKFYTALE---SKNQALAK-------KLLNNSTRGSYSSVLTLLLRLRQACC 1276
Query: 863 VAGHIKVTDAGEDIQETMDVLVENG-------------LDPLSQEYAFIKYNLLNGGNCL 909
H ++ GE E V NG + +S E +N C
Sbjct: 1277 ---HSELVVMGEKKAEGTKVA--NGKSFEDDWLRLYYKITHMSGEAQAQVITSMNSMTCF 1331
Query: 910 -----------------RHILCLDCVAMDSEKCSL-------PGCGFLYEMQSPEILTRP 945
H++C C+ E+ S+ G F + + LT
Sbjct: 1332 WCMEQLEPEAMSVLTGCGHLICDTCIEPFIEESSMLPQAKKTKGGAFAIPCKDCQRLT-- 1389
Query: 946 ENPNPKWPVPQDLIE-----------LQPSYRQWSNTNTFLKQDLYRPNLES-------- 986
N K V L + L Y ++++Y PN ES
Sbjct: 1390 ---NEKDIVSHKLYDQVINQGFTEEDLHAEYLSEMEKQKIQQKNVYVPNFESLEPSTKIE 1446
Query: 987 ----------NKALPDKVIIFSQFLEHIHVIE----QQLTVAGIKFAGMYSPMHSSNKIK 1032
+++ +K+IIFSQF ++E +L +K+ G + S+ I
Sbjct: 1447 QCIQVIQRVFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVIN 1506
Query: 1033 SLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPI 1092
+ +R + L+ + + GL L+ V +++P W+ +EEQ R +R+ T+ +
Sbjct: 1507 --EFYRDPEKRILLISMKAGNSGLTLTCANHVVIVDPFWNPYVEEQAQDRCYRISQTKKV 1564
Query: 1093 HVETLAMRGTVEEQMLEF 1110
V L ++ +VE+++ E
Sbjct: 1565 QVHKLFIKDSVEDRISEL 1582
>sp|O14647|CHD2_HUMAN Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2
PE=1 SV=2
Length = 1828
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLM 1048
++V+IFSQ + + ++ + LT+ F + + + ++LD F D S C LL
Sbjct: 808 NRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCF-LLS 866
Query: 1049 DGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ LG++L+ V + + W+ + Q +RAHR+G + +++ L +GTVEE+++
Sbjct: 867 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 926
Query: 1109 E 1109
E
Sbjct: 927 E 927
Score = 38.9 bits (89), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 20/125 (16%)
Query: 661 YDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNR 720
++ +ITT+ L + K+ + ++W + +DE H L + +L K I +++R
Sbjct: 589 FNALITTYEILLKD-----KTVLGSINWAFLGVDEAHRLKNDDSLLYK--TLIDFKSNHR 641
Query: 721 WLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQL 780
L+TGTP N+ L L +L F+ E + + W+ FE + +GR Q
Sbjct: 642 LLITGTPLQNS----LKELWSLLHFIMPEKF----EFWED-----FEEDHGKGRENGYQS 688
Query: 781 LHRCM 785
LH+ +
Sbjct: 689 LHKVL 693
>sp|B3MMA5|RAD54_DROAN DNA repair and recombination protein RAD54-like OS=Drosophila
ananassae GN=okr PE=3 SV=1
Length = 791
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRH-DASCLALLMDG 1050
DKV++ S + + + + EQ F + M + K +D F D+ C ++
Sbjct: 520 DKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDKFNDPDSECFLFMLSS 579
Query: 1051 SAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
A GL+L R+F+ +P W+ + +EQ ++R R G +P ++ L GT+EE++L+
Sbjct: 580 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGTIEEKILQ 639
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 109/245 (44%), Gaps = 31/245 (12%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNR----LS 672
++V PS LV +W+ + + ++ G+L K + + + + + +S
Sbjct: 220 IVVSPSSLVKNWEKEFTKWLQ-GRLLCLAMEGGTKENTIRVLEQFSMTSSKLGTPVLLIS 278
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTP 732
E R + + V+ DEGH L +S NLT Q + L R LL+GTP N
Sbjct: 279 YETFRIYAEILCKYEVGMVICDEGHRLKNSDNLT--YQALMGLKTKRRVLLSGTPIQN-- 334
Query: 733 NSQLSHLQPMLKFLHEEAYGQN---QKAWDGGILRPFEAEMEEGRSR--------LLQLL 781
L+ ++ F++ E G ++ ++ ILR A+ EG + L+ L+
Sbjct: 335 --DLTEYFSLVNFVNPEMLGTAADFKRNFENSILRGQNADSTEGERKKAIEKTQELIGLV 392
Query: 782 HRCMISARKTD---LQTIPLCIKEVTFLNFTEEHAGTYNELVVT--VRRNILMADWNDPS 836
+C+I R+T+ + +P+ + V + T Y + + VRR+ +AD N+ +
Sbjct: 393 DQCII--RRTNQILTKYLPIKFEMVICVKLTAIQLQLYTNFLNSDQVRRS--LADCNEKA 448
Query: 837 HVESL 841
+ +L
Sbjct: 449 SLTAL 453
>sp|Q5BHD6|RAD5_EMENI DNA repair protein rad5 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=rad5 PE=3 SV=1
Length = 1202
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 34/150 (22%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSA 1052
K ++FSQF + +I QLT AGI F + M + + L F + +D +
Sbjct: 1016 KSVVFSQFTSFLDLIGPQLTKAGISFVRLDGTMAQKARAEVLAQFTKFETFTQEELDQAE 1075
Query: 1053 S----------------------------------LGLDLSFVTRVFLMEPIWDRSMEEQ 1078
S +GL+L+ + VF+M+P W ++E Q
Sbjct: 1076 STSAPSGLTPTPKTPKQSSSPSSPTVLLISLKAGGVGLNLTAASNVFMMDPWWSFAIEAQ 1135
Query: 1079 VISRAHRMGATRPIHVETLAMRGTVEEQML 1108
I R HRMG R ++V ++ ++EE+ML
Sbjct: 1136 AIDRVHRMGQLRDVNVVRFIVKDSIEERML 1165
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 113/270 (41%), Gaps = 37/270 (13%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKK-------------PSAHSLAWDYD 662
TL+V P L+ W+ + + R G + + ++ ++K + + + Y
Sbjct: 561 TLVVAPMSLLAQWEGEALKASRNGSMKVLMYYGNEKNVNLREMCSAGNAAAPNMILTSYG 620
Query: 663 VVITTFNRLSAEWGRRKKSP--MMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNR 720
VV++ A +P + V + RV+LDE H + + + T + L A++R
Sbjct: 621 VVMSEHRTHQALAPGTSWTPGNLFSVDFFRVILDEAHIIKNRRSKTAR--ACYDLKATHR 678
Query: 721 WLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQL 780
W+LTGTP N +L L +++FL E + N W I PFE++ ++Q
Sbjct: 679 WVLTGTPIVN----RLEDLFSLVRFLRVEPWN-NFSFWKTFITAPFESKEVVRAISVVQT 733
Query: 781 LHRCMISARKTDLQT------IPLCIKEVTF--LNFTEEHAGTYNELVVTVRRNILMADW 832
+ ++ R ++T +PL + + + E+ YN + ++ +
Sbjct: 734 VLEPLVLRRTKSMKTPEGEPLVPLPKRTIRIEKVELIEQEREIYNHIYTRAKQT-----F 788
Query: 833 NDPSHVESLLNPKQWKFRSTTIRNLRLSCC 862
N +LL K + + LR +CC
Sbjct: 789 NSNVAAGTLL--KSYSTIFAQLLRLRQTCC 816
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 17/98 (17%)
Query: 165 LKLFPHQQAAVEWMLHREWNA----EVLRHPLY------------IDLATEDGF-YFYVN 207
+ L +Q+ A+ WML +E + EV HPL+ DL +G +FYVN
Sbjct: 434 MDLRKYQKQALYWMLSKEKDKKSGREVSIHPLWEEYDWPLKDVDDKDLPIIEGINHFYVN 493
Query: 208 TVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245
SG+++ + GG+ DE GLGKTI LSL+
Sbjct: 494 PYSGELSLDFPAQEQHCLGGILADEMGLGKTIEMLSLV 531
>sp|P34739|TTF2_DROME Transcription termination factor 2 OS=Drosophila melanogaster
GN=lds PE=1 SV=2
Length = 1061
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 19/184 (10%)
Query: 615 ATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAE 674
TL+V P+ L+ W+++++ V +L + V + + + DYD+V+TT+ ++ E
Sbjct: 526 GTLVVCPASLLRQWESEVESKVSRQKLTVCVHHGNNRETKGKYLRDYDIVVTTYQIVARE 585
Query: 675 WGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLTASNRWLLTGTPTPNTPN 733
+ S + V W R++LDE H + N ++ +A+ L RW LTGTP N
Sbjct: 586 --HKSLSAVFGVKWRRIILDEAHVV---RNHKSQSSLAVCDLRGKYRWALTGTPIQN--- 637
Query: 734 SQLSHLQPMLKFLHEEAYG--QNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKT 791
+ + +LKFL + K W + + G++RL L+ M+ K
Sbjct: 638 -KELDVYALLKFLRCSPFDDLHTWKKW-------IDNKSAGGQNRLNLLMKSLMLRRTKA 689
Query: 792 DLQT 795
LQ+
Sbjct: 690 QLQS 693
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMF--RHDASCLA 1045
K+ DK I+ SQ+ + ++ L+ G+ + + N+ ++ F R++ +
Sbjct: 905 KSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQDIVNEFNDRNNQKRVL 964
Query: 1046 LLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEE 1105
LL + +GL+L + L++ W+ +E Q R +R+G + + + TV E
Sbjct: 965 LLSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCVDTV-E 1023
Query: 1106 QMLEFLQD 1113
Q ++ LQD
Sbjct: 1024 QRIKGLQD 1031
>sp|Q4WVM1|RAD5_ASPFU DNA repair protein rad5 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rad5 PE=3
SV=2
Length = 1245
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 115/267 (43%), Gaps = 34/267 (12%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKK------------PSAHSLAWDYDV 663
TL+V P+ L+ W+++ + G + + ++ K P+A ++
Sbjct: 614 TLVVAPTSLLSQWESEAMKASEQGTMKVLMYYGVDKSTNLQELCSAGNPAAPNIIITSYG 673
Query: 664 VITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLL 723
V+ + +R A + + + V + RV+LDE H + + + T + L A++RW+L
Sbjct: 674 VVLSESRQLAMFNSNTQGGLFSVDFFRVILDEAHVIKNRRSKTAR--ACYELRATHRWVL 731
Query: 724 TGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHR 783
TGTP N +L L +++FL E + N W I PFE++ ++Q +
Sbjct: 732 TGTPIVN----RLEDLFSLVRFLQVEPWN-NFSFWKTFITVPFESKDYVRALNVVQTVLE 786
Query: 784 CMISARKTDLQT--------IPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDP 835
++ R ++T +P ++ + +E+ Y+ + +R +ND
Sbjct: 787 PLVLRRTKTMKTPEGEPLVPLPRRTIDIVEVELSEQEREIYDYIFTRAKRT-----FNDN 841
Query: 836 SHVESLLNPKQWKFRSTTIRNLRLSCC 862
+LL K + I LR +CC
Sbjct: 842 IEAGTLL--KSFSTIFAQILRLRQTCC 866
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 31/147 (21%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMF--------------- 1037
K ++FSQF + +I QLT AGI + + M + + L F
Sbjct: 1060 KSVVFSQFTSFLDLIGAQLTKAGISYVRLDGTMPQKARAEVLAEFNRTETFHQEEIDEDE 1119
Query: 1038 --------------RHDASCLALLMDG--SASLGLDLSFVTRVFLMEPIWDRSMEEQVIS 1081
R A+L+ + +GL+L+ + VF+M+P W ++E Q I
Sbjct: 1120 GPDTPRVRISSKNSRSSPKSPAVLLISLRAGGVGLNLTAASNVFMMDPWWSFAIEAQAID 1179
Query: 1082 RAHRMGATRPIHVETLAMRGTVEEQML 1108
R HRMG R + V ++ ++E +ML
Sbjct: 1180 RVHRMGQLRDVSVTRFIVKDSIEGRML 1206
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 17/102 (16%)
Query: 161 PCMKLKLFPHQQAAVEWMLHREWNA----EVLRHPLYIDL-------------ATEDGFY 203
P L L +Q+ A+ WML +E + E+ HPL+ + A E +
Sbjct: 477 PSFVLNLRKYQRQALHWMLAKEKDKKSGRELSMHPLWEEYTWPTKDVDDKDLPAVEGQAH 536
Query: 204 FYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245
FYVN SG+++ + GG+ DE GLGKTI LSLI
Sbjct: 537 FYVNPYSGELSLDFPAQEQHCLGGILADEMGLGKTIEMLSLI 578
>sp|A4R227|INO80_MAGO7 Putative DNA helicase INO80 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=INO80 PE=3 SV=1
Length = 1944
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 13/167 (7%)
Query: 963 PSYRQW-SNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGM 1021
PS RQ+ +N+ K D L KA +V+++ Q I ++E+ LT K+ +
Sbjct: 1649 PSMRQFITNSGKLAKLDELLFKL---KAGGHRVLLYFQMTRMIDLMEEYLTYRNWKYCRL 1705
Query: 1022 YSPMHSSNKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVI 1080
++ ++ F+ + S L+ A LG++L+ V + W+ +++ Q +
Sbjct: 1706 DGSTKFEDRRDTVHDFQTNPSIFVFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAM 1765
Query: 1081 SRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVK 1127
RAHR+G TR + V L RGT+EE++ R R + KEE+ +
Sbjct: 1766 DRAHRLGQTRQVTVYRLITRGTIEERI--------RKRAMQKEEVQR 1804
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 26/149 (17%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVW---TDHK--------KPSAHSLAWDYDVVI 665
L+V P+ + +W+ +I++ V P + W +D K K S + + V I
Sbjct: 1131 LVVAPASTLHNWEQEIKRFV-PDLKIVPYWGSASDRKILRKFWDRKHSTYKRDAQFHVAI 1189
Query: 666 TTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
T++ + ++ +K + W ++LDE + SS +++ + +S NR LLTG
Sbjct: 1190 TSYQMVVSDVAYFQK-----MKWQYMILDEAQAIKSSQ--SSRWKCLLSFHCRNRLLLTG 1242
Query: 726 TPTPNTPNSQ-----LSHLQPMLKFLHEE 749
TP N N Q L + P L HEE
Sbjct: 1243 TPIQN--NMQELWALLHFIMPSLFDSHEE 1269
>sp|P32657|CHD1_YEAST Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CHD1 PE=1 SV=1
Length = 1468
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRH-DASCLALLMDGS 1051
+V+IFSQ + + ++ L++ GI F + + S+ + S+D F D++ L+
Sbjct: 713 RVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTR 772
Query: 1052 AS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
A LG++L V + + W+ + Q ++RAHR+G + V L + TVEE++LE
Sbjct: 773 AGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLE 831
>sp|Q0UG82|INO80_PHANO Putative DNA helicase INO80 OS=Phaeosphaeria nodorum (strain SN15 /
ATCC MYA-4574 / FGSC 10173) GN=INO80 PE=3 SV=2
Length = 1673
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 9/145 (6%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
L+ KA +V+++ Q I ++E+ LT K+ + ++ ++ F+ D +
Sbjct: 1408 LKGLKAGDHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQSDPTI 1467
Query: 1044 LALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
L+ A LG++L+ V + W+ +++ Q + RAHR+G TR + V L GT
Sbjct: 1468 FVFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITSGT 1527
Query: 1103 VEEQMLEFLQDTDRCRRLLKEELVK 1127
+EE++ R R L KEE+ +
Sbjct: 1528 IEERI--------RKRALQKEEVQR 1544
>sp|Q4P328|SWR1_USTMA Helicase SWR1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SWR1
PE=3 SV=1
Length = 1830
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDG-S 1051
+++IF+Q + ++E L G ++ + ++ + F DA A ++ S
Sbjct: 1551 RILIFTQMTRVLDILESFLNYHGYRYLRLDGATKVESRQALTEQFNRDARISAFILSTRS 1610
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
LG++L+ V + W+ ++E Q + RAHR+G TR +H+ T+EE ML
Sbjct: 1611 GGLGINLTGADTVLFYDLDWNAAIEAQCMDRAHRIGQTRDVHIYRFVTEHTIEENML 1667
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 12/118 (10%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWD----YDVVITTFNRLS 672
L+V P+ ++ +W+ + ++ + PG L + + K+ + W+ ++V IT++ +
Sbjct: 1043 LVVAPTSVMLNWEVEFKKFL-PGFKILSYYGNQKERKEKRIGWNTENSFNVCITSYQLVL 1101
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPN 730
A+ ++ P W+ ++LDE H + + + + Q + + R LLTGTP N
Sbjct: 1102 ADQHIFRRKP-----WVYLVLDEAHHIKNFR--SQRWQTLLGFNSQRRLLLTGTPLQN 1152
>sp|Q7S133|SWR1_NEUCR Helicase swr-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=swr-1 PE=3 SV=1
Length = 1845
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDG-S 1051
+ +IF+Q + + ++EQ L + G K+ + + D F HD L ++ S
Sbjct: 1524 RALIFTQMTKVLDILEQFLNIHGHKYLRLDGATKVEQRQILTDRFNHDPRILCFILSTRS 1583
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
LG++L+ V + W+ +M++Q R HR+G TR +H+ L T+E +L
Sbjct: 1584 GGLGINLTGADTVIFYDQDWNPAMDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANIL 1640
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 36/177 (20%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYD----VVITTFNRL- 671
L++VP+ ++ +W+ + ++ PG L + + ++ W+ D V IT++ +
Sbjct: 998 LVIVPTSVMLNWEMEFKKWC-PGFKILTYYGNQEERKRKRQGWNNDDVWNVCITSYQMVL 1056
Query: 672 -SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPN 730
+ RR++ W ++LDE H + + + + Q + R LLTGTP N
Sbjct: 1057 QDQQVFRRRR-------WHYMILDEAHNIKNFK--SQRWQTLLGFNTQARLLLTGTPLQN 1107
Query: 731 TPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGIL----------RPFEAEMEEGRSRL 777
L+ L +L FL G+ GG + RP +E GR +L
Sbjct: 1108 N----LTELWSLLYFLAPPENGE------GGFVDLTEFHNWFARPESQILESGREQL 1154
>sp|Q29KH2|RAD54_DROPS DNA repair and recombination protein RAD54-like OS=Drosophila
pseudoobscura pseudoobscura GN=okr PE=3 SV=2
Length = 782
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRH-DASCLALLMDG 1050
DKV++ S + + + + EQ F + M + K +D F ++ C ++
Sbjct: 515 DKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDCFLFMLSS 574
Query: 1051 SAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
A GL+L R+F+ +P W+ + +EQ ++R R G +P ++ L G++EE++L+
Sbjct: 575 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQ 634
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 25/192 (13%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITT-----FNRL 671
+IV PS LV +W+ + + + G++H K + + + +T +
Sbjct: 213 IIVSPSSLVKNWEKEFTKWLH-GRMHCLAMEGGSKENTVRALEQFSMNASTRLGTPVLLI 271
Query: 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNT 731
S E R + + V+ DEGH L +S NLT Q + L R LL+GTP N
Sbjct: 272 SYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLT--YQALMGLKTKRRVLLSGTPIQN- 328
Query: 732 PNSQLSHLQPMLKFLHEEAYGQN---QKAWDGGILRPFEAE-MEEGRSR-------LLQL 780
L+ ++ F++ E G ++ ++ ILR A+ ++ R R L++L
Sbjct: 329 ---DLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKERDRALEKTQELIKL 385
Query: 781 LHRCMISARKTD 792
+ +C+I R+T+
Sbjct: 386 VDQCII--RRTN 395
>sp|O55764|172L_IIV6 Putative helicase 172L OS=Invertebrate iridescent virus 6
GN=IIV6-172L PE=3 SV=1
Length = 606
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Query: 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDG 1050
P K+I+FS F + ++ + + F + + N+ + D F++D + L +
Sbjct: 448 PTKIIVFSMFTSCLDLLSEAIKEDYPNFKFVQVDGDTKNRSELFDQFKNDINTQGLFLTY 507
Query: 1051 S-ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
S GL+L+ T +EP W ++ Q +R R G T+ ++V + + G++EE+++E
Sbjct: 508 KVGSEGLNLTEATHCICIEPWWTNAVHNQAKARLWRTGQTKQVYVHNVIIEGSIEEKIVE 567
Query: 1110 FLQDTD 1115
+ D
Sbjct: 568 ICKGKD 573
>sp|P0CO18|SWR1_CRYNJ Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=SWR1 PE=3 SV=1
Length = 1246
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDG-S 1051
+V+IF+Q + ++E L+ G ++ + ++ + F D+ + S
Sbjct: 956 RVLIFTQMTRVLDILEMFLSHNGHRYLRLDGSTKIEDRQVLTERFNSDSRIFVFIASSRS 1015
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+G++L+ VF + W+ SM+ Q + RAHR+G TR +H+ TVEE ML
Sbjct: 1016 GGVGINLTGADTVFFYDSDWNPSMDRQCMDRAHRIGQTREVHIYRFVSSHTVEENML 1072
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 40/230 (17%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAW----DYDVVITTFNRLS 672
LI+VP+ ++ +W+ + ++ + PG L + + K+ + W + V IT++ +
Sbjct: 446 LIIVPTSVILNWEMEFKKFL-PGMKVLTYYGNQKERKEKRVGWHTENTWQVCITSYQIVL 504
Query: 673 AEWG--RRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPN 730
A+ RRK +W ++LDE H + + + + Q + A R LLTGTP N
Sbjct: 505 ADQHIFRRK-------NWCYMILDEAHNIKNFR--SQRWQTLLGFKAQRRLLLTGTPLQN 555
Query: 731 TPNSQLSHLQPMLKFLHEEAYG---------QNQKAWDGGILRPFEAEMEEGR------- 774
L L +L FL G N K + P + +E G
Sbjct: 556 N----LMELWSLLYFLMPGGIGADATAVVGFANHKEFMEWFSNPMDKAIETGDAMDEETL 611
Query: 775 ---SRLLQLLHRCMISARKTDLQT-IPLCIKEVTFLNFTEEHAGTYNELV 820
++L LL ++ K++++T +P + V + ++ Y+E +
Sbjct: 612 ETVAKLHTLLRPFILRRLKSEVETQLPGKFEHVVYCRLSKRQRFLYDEFM 661
>sp|P0CO19|SWR1_CRYNB Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=SWR1 PE=3 SV=1
Length = 1246
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDG-S 1051
+V+IF+Q + ++E L+ G ++ + ++ + F D+ + S
Sbjct: 956 RVLIFTQMTRVLDILEMFLSHNGHRYLRLDGSTKIEDRQVLTERFNSDSRIFVFIASSRS 1015
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+G++L+ VF + W+ SM+ Q + RAHR+G TR +H+ TVEE ML
Sbjct: 1016 GGVGINLTGADTVFFYDSDWNPSMDRQCMDRAHRIGQTREVHIYRFVSSHTVEENML 1072
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 40/230 (17%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAW----DYDVVITTFNRLS 672
LI+VP+ ++ +W+ + ++ + PG L + + K+ + W + V IT++ +
Sbjct: 446 LIIVPTSVILNWEMEFKKFL-PGMKVLTYYGNQKERKEKRVGWHTENTWQVCITSYQIVL 504
Query: 673 AEWG--RRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPN 730
A+ RRK +W ++LDE H + + + + Q + A R LLTGTP N
Sbjct: 505 ADQHIFRRK-------NWCYMILDEAHNIKNFR--SQRWQTLLGFKAQRRLLLTGTPLQN 555
Query: 731 TPNSQLSHLQPMLKFLHEEAYG---------QNQKAWDGGILRPFEAEMEEGR------- 774
L L +L FL G N K + P + +E G
Sbjct: 556 N----LMELWSLLYFLMPGGIGADATAVVGFANHKEFMEWFSNPMDKAIETGDAMDEETL 611
Query: 775 ---SRLLQLLHRCMISARKTDLQT-IPLCIKEVTFLNFTEEHAGTYNELV 820
++L LL ++ K++++T +P + V + ++ Y+E +
Sbjct: 612 ETVAKLHTLLRPFILRRLKSEVETQLPGKFEHVVYCRLSKRQRFLYDEFM 661
>sp|A1C9W6|INO80_ASPCL Putative DNA helicase ino80 OS=Aspergillus clavatus (strain ATCC 1007
/ CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=ino80
PE=3 SV=1
Length = 1707
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALL 1047
KA +V+++ Q I ++E+ LT K+ + ++ ++ F+ L
Sbjct: 1432 KAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPDIFVFL 1491
Query: 1048 MDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQ 1106
+ A LG++L+ V + W+ +++ Q + RAHR+G TR + V L RGT+EE+
Sbjct: 1492 LSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEER 1551
Query: 1107 MLEFLQDTDRCRRLLKEELVK 1127
+ R R L KEE+ +
Sbjct: 1552 I--------RKRALQKEEVQR 1564
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 23/127 (18%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWD-----------YDVVI 665
L++ P+ + +W+ +I + V P L W K WD + V++
Sbjct: 888 LVIAPASTLHNWQQEITKFV-PDIKVLPYWGSAKDRKVLRKFWDRKHITYTKESEFHVLV 946
Query: 666 TTFNR--LSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLL 723
T++ L +++ +V W ++LDE + SS +++ + + + NR LL
Sbjct: 947 TSYQLVVLDSQY-------FQKVKWQYMILDEAQAIKSSQ--SSRWKNLLGFSCRNRLLL 997
Query: 724 TGTPTPN 730
TGTP N
Sbjct: 998 TGTPIQN 1004
>sp|B4M9A8|RAD54_DROVI DNA repair and recombination protein RAD54-like OS=Drosophila virilis
GN=okr PE=3 SV=1
Length = 786
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS-CLALLMDG 1050
DKV++ S + + + + EQ + + M + K +D F A+ C ++
Sbjct: 511 DKVVLISNYTQTLDLFEQLARKRKYSYVRLDGTMTIKKRSKVVDRFNDPATDCFLFMLSS 570
Query: 1051 SAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
A GL+L R+F+ +P W+ + +EQ ++R R G +P ++ L G++EE++L+
Sbjct: 571 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQ 630
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 111/253 (43%), Gaps = 37/253 (14%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNR- 670
+S+A ++V PS LV +W+ + + + G++H K + + T R
Sbjct: 206 ISKA-IVVSPSSLVKNWEKEFTKWLH-GRMHCLAMEGGSKEDTTRTLEQF--AMNTATRC 261
Query: 671 ------LSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLT 724
+S E R + + V+ DEGH L +S NLT Q + L R LL+
Sbjct: 262 GTPVLLISYETFRLYSHILCKTEVGMVICDEGHRLKNSDNLT--YQALMGLKTKRRVLLS 319
Query: 725 GTPTPNTPNSQLSHLQPMLKFLHEEAYGQN---QKAWDGGILR-----PFEAEME---EG 773
GTP N L+ ++ F++ E G ++ ++ ILR +AE E E
Sbjct: 320 GTPIQN----DLTEYFSLVNFVNPEMLGTGSDFKRNFENAILRGQNADSTDAERERALEK 375
Query: 774 RSRLLQLLHRCMISARKTD---LQTIPLCIKEVTFLNFTEEHAGTYNELVVT--VRRNIL 828
L+ L+++C+I R+T+ + +P+ + V T Y + + VRR+
Sbjct: 376 TQELVGLVNQCII--RRTNQILTKYLPVKFEMVVCAKLTAVQLQLYTNFLKSDQVRRS-- 431
Query: 829 MADWNDPSHVESL 841
+AD D + + +L
Sbjct: 432 LADCTDKTTLTAL 444
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,539,051
Number of Sequences: 539616
Number of extensions: 19023436
Number of successful extensions: 41027
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 40039
Number of HSP's gapped (non-prelim): 828
length of query: 1158
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1029
effective length of database: 121,958,995
effective search space: 125495805855
effective search space used: 125495805855
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)