Query 001098
Match_columns 1158
No_of_seqs 551 out of 3402
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 10:57:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 5.1E-65 1.8E-69 650.6 28.4 448 561-1125 236-708 (800)
2 1z3i_X Similar to RAD54-like; 100.0 2.3E-64 7.8E-69 629.6 30.4 476 560-1144 54-566 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 3.1E-59 1.1E-63 568.2 35.0 426 561-1123 37-475 (500)
4 3dmq_A RNA polymerase-associat 100.0 6.8E-43 2.3E-47 452.9 20.2 410 562-1116 154-630 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 7.4E-37 2.5E-41 366.6 29.7 453 562-1117 10-491 (494)
6 1z5z_A Helicase of the SNF2/RA 100.0 1.3E-35 4.6E-40 330.7 18.7 231 785-1124 13-247 (271)
7 2fwr_A DNA repair protein RAD2 100.0 1.1E-32 3.6E-37 332.4 19.8 368 561-1117 93-470 (472)
8 4a2w_A RIG-I, retinoic acid in 100.0 1.5E-28 5.1E-33 318.2 30.8 128 988-1120 628-767 (936)
9 4a2p_A RIG-I, retinoic acid in 100.0 8.6E-29 2.9E-33 303.6 27.0 132 989-1125 388-531 (556)
10 3tbk_A RIG-I helicase domain; 100.0 5.9E-28 2E-32 295.8 30.2 122 989-1115 387-520 (555)
11 4a2q_A RIG-I, retinoic acid in 100.0 3.7E-28 1.3E-32 310.9 29.3 132 989-1125 629-772 (797)
12 2oca_A DAR protein, ATP-depend 99.9 9.9E-27 3.4E-31 283.0 25.3 336 562-1107 114-464 (510)
13 4gl2_A Interferon-induced heli 99.9 1.6E-25 5.6E-30 282.8 28.4 112 991-1107 400-525 (699)
14 2ykg_A Probable ATP-dependent 99.9 3.2E-25 1.1E-29 280.0 29.3 114 989-1106 396-521 (696)
15 3hgt_A HDA1 complex subunit 3; 99.9 2.2E-25 7.6E-30 248.5 18.4 221 796-1112 20-248 (328)
16 1xti_A Probable ATP-dependent 99.9 2.8E-23 9.6E-28 243.0 28.9 120 990-1113 249-368 (391)
17 3h1t_A Type I site-specific re 99.9 1.2E-23 4.1E-28 260.5 25.1 109 989-1098 437-558 (590)
18 1hv8_A Putative ATP-dependent 99.9 3.3E-23 1.1E-27 239.6 24.7 111 989-1102 236-346 (367)
19 2z0m_A 337AA long hypothetical 99.9 1.4E-23 4.9E-28 240.0 17.4 118 989-1112 218-335 (337)
20 2j0s_A ATP-dependent RNA helic 99.9 4.4E-22 1.5E-26 234.8 28.2 109 991-1102 276-384 (410)
21 1s2m_A Putative ATP-dependent 99.9 8.4E-22 2.9E-26 231.4 29.1 109 990-1101 257-365 (400)
22 3pey_A ATP-dependent RNA helic 99.9 2.2E-21 7.6E-26 226.7 30.7 118 990-1111 242-365 (395)
23 3eiq_A Eukaryotic initiation f 99.9 6.9E-22 2.3E-26 233.0 19.5 109 990-1101 279-387 (414)
24 1fuu_A Yeast initiation factor 99.9 1.4E-22 4.8E-27 237.1 11.5 109 990-1101 258-366 (394)
25 2db3_A ATP-dependent RNA helic 99.9 1.5E-20 5.3E-25 223.9 26.2 106 993-1101 302-407 (434)
26 2i4i_A ATP-dependent RNA helic 99.9 1.4E-20 4.9E-25 222.0 25.6 109 990-1101 275-383 (417)
27 3fht_A ATP-dependent RNA helic 99.8 1.3E-19 4.4E-24 213.2 29.5 121 990-1114 265-391 (412)
28 1oyw_A RECQ helicase, ATP-depe 99.8 1.4E-19 4.8E-24 220.2 22.9 104 990-1094 235-338 (523)
29 2v1x_A ATP-dependent DNA helic 99.8 5.1E-19 1.8E-23 217.8 21.4 105 990-1095 266-370 (591)
30 2eyq_A TRCF, transcription-rep 99.8 1.1E-18 3.9E-23 229.2 22.6 109 990-1101 811-922 (1151)
31 3sqw_A ATP-dependent RNA helic 99.8 5.9E-18 2E-22 209.0 25.8 120 989-1113 286-408 (579)
32 3i5x_A ATP-dependent RNA helic 99.8 1.2E-17 4E-22 205.6 26.1 119 989-1112 337-458 (563)
33 3fho_A ATP-dependent RNA helic 99.8 5.8E-19 2E-23 214.5 13.3 108 990-1100 356-469 (508)
34 3oiy_A Reverse gyrase helicase 99.8 1.8E-17 6.1E-22 195.9 25.5 113 992-1115 253-375 (414)
35 3fmp_B ATP-dependent RNA helic 99.7 6.2E-18 2.1E-22 203.9 15.5 108 990-1100 332-445 (479)
36 2xgj_A ATP-dependent RNA helic 99.7 1.3E-16 4.6E-21 206.7 28.3 120 990-1110 342-508 (1010)
37 1gm5_A RECG; helicase, replica 99.7 1.1E-17 3.6E-22 210.6 11.2 90 1004-1094 599-692 (780)
38 3l9o_A ATP-dependent RNA helic 99.7 1.2E-15 4E-20 199.6 24.5 123 989-1112 439-608 (1108)
39 2va8_A SSO2462, SKI2-type heli 99.7 4E-15 1.4E-19 188.2 27.6 112 990-1102 251-409 (715)
40 2zj8_A DNA helicase, putative 99.7 4.1E-15 1.4E-19 188.3 27.3 115 990-1105 236-391 (720)
41 2p6r_A Afuhel308 helicase; pro 99.7 5.2E-15 1.8E-19 186.7 27.4 88 1017-1105 298-392 (702)
42 4a4z_A Antiviral helicase SKI2 99.6 1.1E-14 3.8E-19 188.7 20.5 119 989-1109 334-500 (997)
43 2w00_A HSDR, R.ECOR124I; ATP-b 99.6 7E-14 2.4E-18 180.5 25.7 158 561-731 271-442 (1038)
44 2e61_A Zinc finger CW-type PWW 99.6 9.7E-16 3.3E-20 130.7 4.6 52 430-481 13-67 (69)
45 1t5i_A C_terminal domain of A 99.6 1.7E-14 5.7E-19 149.5 14.0 119 990-1112 30-148 (172)
46 2hjv_A ATP-dependent RNA helic 99.6 6.2E-15 2.1E-19 151.3 9.8 120 989-1113 33-152 (163)
47 2jgn_A DBX, DDX3, ATP-dependen 99.6 5.8E-15 2E-19 154.9 9.4 109 990-1101 45-153 (185)
48 2p6n_A ATP-dependent RNA helic 99.5 2E-14 6.8E-19 151.5 12.0 108 991-1101 54-161 (191)
49 2l7p_A Histone-lysine N-methyl 99.5 3.4E-15 1.2E-19 135.8 3.5 54 429-482 22-77 (100)
50 1fuk_A Eukaryotic initiation f 99.5 4.6E-14 1.6E-18 145.0 11.9 111 990-1103 29-139 (165)
51 1rif_A DAR protein, DNA helica 99.5 1E-13 3.4E-18 155.2 14.2 157 562-748 114-278 (282)
52 2rb4_A ATP-dependent RNA helic 99.5 2.3E-13 7.8E-18 141.2 13.2 110 990-1102 33-148 (175)
53 2yjt_D ATP-dependent RNA helic 99.2 4.2E-15 1.4E-19 153.6 0.0 119 989-1112 28-146 (170)
54 4ddu_A Reverse gyrase; topoiso 99.5 3.1E-12 1.1E-16 167.4 25.4 73 992-1071 310-388 (1104)
55 3eaq_A Heat resistant RNA depe 99.4 6.2E-13 2.1E-17 142.4 13.4 110 989-1101 29-138 (212)
56 2v6i_A RNA helicase; membrane, 99.4 4.1E-12 1.4E-16 150.8 19.4 99 991-1095 171-287 (431)
57 1gku_B Reverse gyrase, TOP-RG; 99.4 9.8E-12 3.4E-16 162.6 22.5 116 991-1115 275-466 (1054)
58 2fz4_A DNA repair protein RAD2 99.4 2.1E-12 7.3E-17 140.7 13.6 135 562-731 94-232 (237)
59 3rc3_A ATP-dependent RNA helic 99.4 1.9E-11 6.6E-16 151.6 22.1 106 994-1100 323-444 (677)
60 2jlq_A Serine protease subunit 99.3 8.7E-12 3E-16 149.0 17.3 94 991-1090 188-301 (451)
61 1yks_A Genome polyprotein [con 99.3 1.7E-11 6E-16 145.8 16.9 93 991-1089 177-288 (440)
62 3i32_A Heat resistant RNA depe 99.3 9.9E-12 3.4E-16 139.9 13.6 110 990-1102 27-136 (300)
63 2wv9_A Flavivirin protease NS2 99.3 3.4E-11 1.2E-15 149.8 19.2 96 990-1091 409-525 (673)
64 2z83_A Helicase/nucleoside tri 99.3 3E-11 1E-15 144.6 16.7 107 991-1104 190-316 (459)
65 2whx_A Serine protease/ntpase/ 99.3 6.1E-11 2.1E-15 146.5 19.4 102 991-1099 355-476 (618)
66 3o8b_A HCV NS3 protease/helica 99.3 4.5E-11 1.5E-15 146.8 17.4 102 990-1104 395-517 (666)
67 2xau_A PRE-mRNA-splicing facto 99.2 1.3E-11 4.4E-16 156.2 12.2 111 990-1103 302-445 (773)
68 1tf5_A Preprotein translocase 99.2 2.5E-10 8.5E-15 141.6 21.1 101 989-1092 430-538 (844)
69 2fsf_A Preprotein translocase 99.2 4.8E-10 1.6E-14 138.7 21.1 102 989-1093 439-577 (853)
70 4f92_B U5 small nuclear ribonu 99.2 1E-09 3.4E-14 148.9 24.6 84 1017-1101 1215-1308(1724)
71 4f92_B U5 small nuclear ribonu 99.2 7.3E-10 2.5E-14 150.3 22.4 87 1016-1103 379-475 (1724)
72 1nkt_A Preprotein translocase 99.1 1.5E-09 5.2E-14 134.5 23.0 101 989-1092 458-610 (922)
73 3b6e_A Interferon-induced heli 99.1 1.7E-10 5.9E-15 122.7 12.6 150 562-726 34-216 (216)
74 3jux_A Protein translocase sub 99.1 1E-08 3.4E-13 124.6 23.8 108 989-1101 472-587 (822)
75 2pl3_A Probable ATP-dependent 99.0 1.5E-09 5.2E-14 117.6 14.4 130 598-729 70-214 (236)
76 1t6n_A Probable ATP-dependent 99.0 1E-09 3.5E-14 117.6 12.7 153 562-731 37-204 (220)
77 2gxq_A Heat resistant RNA depe 99.0 6.7E-10 2.3E-14 117.5 10.4 149 562-729 24-187 (207)
78 1q0u_A Bstdead; DEAD protein, 99.0 2.4E-09 8.1E-14 114.8 13.8 127 598-727 49-191 (219)
79 1vec_A ATP-dependent RNA helic 99.0 3E-09 1E-13 112.5 13.8 150 562-728 26-188 (206)
80 1qde_A EIF4A, translation init 99.0 2.5E-09 8.4E-14 114.8 13.0 151 562-729 37-198 (224)
81 2oxc_A Probable ATP-dependent 99.0 3.8E-09 1.3E-13 114.1 13.5 149 562-727 47-208 (230)
82 1wrb_A DJVLGB; RNA helicase, D 98.9 2.7E-09 9.1E-14 117.0 11.1 151 562-729 46-221 (253)
83 1z3i_X Similar to RAD54-like; 98.9 3.6E-10 1.2E-14 140.9 2.9 74 159-266 48-132 (644)
84 3ber_A Probable ATP-dependent 98.9 6.5E-09 2.2E-13 113.9 11.9 152 562-729 66-229 (249)
85 3mwy_W Chromo domain-containin 98.9 8.2E-10 2.8E-14 141.0 5.3 74 163-275 233-317 (800)
86 3bor_A Human initiation factor 98.8 1.5E-08 5.1E-13 110.0 13.3 129 598-729 75-216 (237)
87 3iuy_A Probable ATP-dependent 98.8 2.8E-08 9.7E-13 106.9 13.9 128 598-729 65-210 (228)
88 1z63_A Helicase of the SNF2/RA 98.8 2.3E-09 8E-14 129.5 5.9 68 160-266 31-104 (500)
89 3dkp_A Probable ATP-dependent 98.7 7.8E-08 2.7E-12 104.7 13.3 129 598-727 74-220 (245)
90 1c4o_A DNA nucleotide excision 98.7 5.8E-08 2E-12 121.0 13.2 110 989-1102 437-551 (664)
91 2d7d_A Uvrabc system protein B 98.7 8.1E-08 2.8E-12 119.7 13.7 110 989-1102 443-557 (661)
92 3ly5_A ATP-dependent RNA helic 98.6 1.3E-07 4.6E-12 104.2 12.5 152 562-729 77-244 (262)
93 3fe2_A Probable ATP-dependent 98.5 1.2E-07 4E-12 103.2 9.2 149 562-727 52-217 (242)
94 3fmo_B ATP-dependent RNA helic 98.2 1.2E-05 4.2E-10 90.3 15.1 129 598-729 139-279 (300)
95 3dmq_A RNA polymerase-associat 98.2 7.5E-07 2.6E-11 115.7 5.5 67 159-266 146-218 (968)
96 2ipc_A Preprotein translocase 98.1 0.00013 4.5E-09 90.6 21.0 133 598-748 100-248 (997)
97 1wp9_A ATP-dependent RNA helic 97.5 3.3E-05 1.1E-09 91.4 3.1 58 165-266 8-71 (494)
98 3crv_A XPD/RAD3 related DNA he 97.4 0.00027 9.4E-09 86.2 9.5 102 598-701 30-187 (551)
99 2vl7_A XPD; helicase, unknown 97.3 0.00038 1.3E-08 84.7 9.2 90 989-1083 382-475 (540)
100 3llm_A ATP-dependent RNA helic 97.1 0.0011 3.9E-08 71.2 9.7 125 598-730 84-221 (235)
101 2fwr_A DNA repair protein RAD2 96.8 0.00041 1.4E-08 82.7 3.2 61 163-266 90-152 (472)
102 1rif_A DAR protein, DNA helica 96.7 0.00052 1.8E-08 76.0 2.6 59 165-266 112-176 (282)
103 2fz4_A DNA repair protein RAD2 96.2 0.002 7E-08 69.5 3.5 61 163-266 90-152 (237)
104 4gl2_A Interferon-induced heli 95.8 0.0052 1.8E-07 76.9 4.6 59 164-265 5-75 (699)
105 3h1t_A Type I site-specific re 95.7 0.0041 1.4E-07 76.3 3.1 79 660-743 274-353 (590)
106 2ykg_A Probable ATP-dependent 95.6 0.0057 1.9E-07 76.5 4.1 87 660-749 111-208 (696)
107 2oca_A DAR protein, ATP-depend 95.6 0.0042 1.4E-07 74.7 2.6 60 164-266 111-176 (510)
108 3tbk_A RIG-I helicase domain; 95.3 0.0085 2.9E-07 72.3 4.2 69 660-731 102-178 (555)
109 4a2p_A RIG-I, retinoic acid in 94.9 0.012 4.1E-07 71.1 3.9 69 660-731 105-180 (556)
110 2vl7_A XPD; helicase, unknown 94.7 0.037 1.3E-06 67.1 7.4 99 598-700 34-188 (540)
111 4a2w_A RIG-I, retinoic acid in 94.5 0.017 5.8E-07 74.8 4.0 70 660-731 346-421 (936)
112 3b6e_A Interferon-induced heli 94.3 0.017 5.8E-07 60.3 2.7 61 162-265 29-101 (216)
113 4a2q_A RIG-I, retinoic acid in 94.1 0.024 8.3E-07 72.1 4.0 69 660-731 346-421 (797)
114 2z0m_A 337AA long hypothetical 93.9 0.033 1.1E-06 62.3 4.1 68 660-730 105-173 (337)
115 4a15_A XPD helicase, ATP-depen 93.8 0.021 7.4E-07 70.3 2.6 77 991-1072 448-528 (620)
116 1xti_A Probable ATP-dependent 93.5 0.038 1.3E-06 63.3 4.0 68 660-730 128-197 (391)
117 4b3f_X DNA-binding protein smu 92.8 0.33 1.1E-05 60.1 10.9 144 561-731 189-403 (646)
118 3vkw_A Replicase large subunit 92.7 0.21 7.2E-06 58.4 8.5 103 598-731 169-273 (446)
119 1hv8_A Putative ATP-dependent 92.1 0.084 2.9E-06 59.6 4.1 69 660-731 123-192 (367)
120 1s2m_A Putative ATP-dependent 91.8 0.088 3E-06 60.6 3.8 67 660-730 139-207 (400)
121 1fuu_A Yeast initiation factor 91.7 0.073 2.5E-06 61.0 3.0 66 661-729 139-205 (394)
122 1t6n_A Probable ATP-dependent 91.4 0.12 4.1E-06 54.3 4.1 40 226-265 53-100 (220)
123 1wee_A PHD finger family prote 91.3 0.12 4.1E-06 44.6 3.2 31 432-462 28-61 (72)
124 2gxq_A Heat resistant RNA depe 91.2 0.13 4.5E-06 53.2 4.1 57 166-265 23-90 (207)
125 2j0s_A ATP-dependent RNA helic 91.2 0.11 3.7E-06 60.1 3.9 67 660-729 155-222 (410)
126 2j9r_A Thymidine kinase; TK1, 90.9 0.56 1.9E-05 49.3 8.5 55 687-746 101-158 (214)
127 1we9_A PHD finger family prote 89.9 0.11 3.8E-06 43.6 1.7 31 432-462 19-53 (64)
128 2pl3_A Probable ATP-dependent 89.7 0.2 7E-06 53.1 4.0 57 166-265 47-115 (236)
129 2gk6_A Regulator of nonsense t 89.6 1.2 4E-05 54.8 11.3 60 659-731 318-377 (624)
130 3o70_A PHD finger protein 13; 89.2 0.14 4.9E-06 43.6 1.9 32 431-462 29-62 (68)
131 3pey_A ATP-dependent RNA helic 88.7 0.23 7.7E-06 56.7 3.7 67 660-729 121-189 (395)
132 1xx6_A Thymidine kinase; NESG, 88.4 1.3 4.4E-05 45.8 8.8 55 687-746 81-138 (191)
133 2xzl_A ATP-dependent helicase 88.2 1.7 5.9E-05 54.9 11.6 59 659-731 497-555 (802)
134 1wep_A PHF8; structural genomi 88.0 0.2 6.9E-06 44.0 2.1 31 432-462 24-58 (79)
135 2wjy_A Regulator of nonsense t 87.9 1.6 5.5E-05 55.2 11.0 59 660-731 495-553 (800)
136 3o7a_A PHD finger protein 13 v 87.9 0.18 6.3E-06 40.4 1.6 32 431-462 14-47 (52)
137 1wrb_A DJVLGB; RNA helicase, D 87.6 0.34 1.2E-05 52.0 4.1 38 166-246 45-82 (253)
138 2kgg_A Histone demethylase jar 86.9 0.16 5.4E-06 40.8 0.7 32 431-462 14-49 (52)
139 3eiq_A Eukaryotic initiation f 86.6 0.37 1.3E-05 55.5 3.8 68 660-730 159-227 (414)
140 4gut_A Lysine-specific histone 86.3 0.16 5.6E-06 64.0 0.7 46 433-478 91-145 (776)
141 3e1s_A Exodeoxyribonuclease V, 86.2 1.5 5.1E-05 53.3 9.1 103 598-731 212-319 (574)
142 1q0u_A Bstdead; DEAD protein, 86.1 0.37 1.3E-05 50.4 3.3 57 166-265 26-90 (219)
143 1wem_A Death associated transc 86.0 0.21 7.3E-06 43.5 1.0 31 432-462 27-65 (76)
144 1qde_A EIF4A, translation init 85.9 0.5 1.7E-05 49.5 4.1 57 166-265 36-100 (224)
145 2oxc_A Probable ATP-dependent 85.7 0.51 1.7E-05 49.9 4.1 40 226-265 63-110 (230)
146 2lv9_A Histone-lysine N-methyl 85.1 0.58 2E-05 42.9 3.6 32 431-462 38-71 (98)
147 2b8t_A Thymidine kinase; deoxy 84.8 2 6.7E-05 45.5 8.1 38 685-726 87-124 (223)
148 2w00_A HSDR, R.ECOR124I; ATP-b 84.6 0.42 1.4E-05 62.0 3.3 74 164-266 269-349 (1038)
149 3ber_A Probable ATP-dependent 84.6 0.61 2.1E-05 50.1 4.1 57 166-265 65-129 (249)
150 2orw_A Thymidine kinase; TMTK, 84.6 1.7 5.7E-05 44.5 7.2 55 687-746 76-133 (184)
151 3kqi_A GRC5, PHD finger protei 82.6 0.32 1.1E-05 42.3 0.7 31 432-462 22-56 (75)
152 4a15_A XPD helicase, ATP-depen 81.8 2.5 8.5E-05 51.8 8.5 44 658-701 173-218 (620)
153 2orv_A Thymidine kinase; TP4A 81.4 3.2 0.00011 44.0 8.0 55 687-746 90-146 (234)
154 3bor_A Human initiation factor 81.0 0.8 2.7E-05 48.6 3.3 39 227-265 70-116 (237)
155 1fs1_A SKP2 F-BOX, cyclin A/CD 80.9 0.8 2.7E-05 36.5 2.4 39 119-157 6-44 (53)
156 1vec_A ATP-dependent RNA helic 80.9 1.8 6.2E-05 44.4 5.9 56 166-264 25-88 (206)
157 2vpb_A Hpygo1, pygopus homolog 79.9 0.36 1.2E-05 40.7 0.0 33 430-462 19-61 (65)
158 3e2i_A Thymidine kinase; Zn-bi 77.4 7.5 0.00026 40.8 9.1 56 687-746 101-158 (219)
159 1wew_A DNA-binding family prot 76.6 1.4 4.9E-05 38.4 2.9 32 431-462 26-67 (78)
160 1w4r_A Thymidine kinase; type 75.4 7.7 0.00026 40.0 8.5 53 688-745 92-146 (195)
161 2k16_A Transcription initiatio 75.0 0.94 3.2E-05 39.2 1.3 32 431-462 29-63 (75)
162 3upu_A ATP-dependent DNA helic 75.0 3.4 0.00012 48.6 6.5 42 686-731 127-168 (459)
163 2eyq_A TRCF, transcription-rep 74.9 1.4 4.8E-05 58.1 3.5 75 613-698 812-893 (1151)
164 1w36_D RECD, exodeoxyribonucle 72.1 6.8 0.00023 47.8 8.4 42 686-731 261-302 (608)
165 2ri7_A Nucleosome-remodeling f 70.8 0.86 2.9E-05 46.3 -0.0 31 432-462 20-54 (174)
166 2i4i_A ATP-dependent RNA helic 69.2 2.9 0.0001 47.9 4.1 66 660-729 151-222 (417)
167 2db3_A ATP-dependent RNA helic 69.0 2.6 8.9E-05 49.1 3.6 66 660-729 179-248 (434)
168 2rsd_A E3 SUMO-protein ligase 69.0 2 6.8E-05 36.4 1.9 32 431-462 20-60 (68)
169 1e0l_A Formin binding protein; 65.2 4.7 0.00016 29.7 3.0 31 189-219 4-34 (37)
170 3fht_A ATP-dependent RNA helic 64.3 6.5 0.00022 44.7 5.7 68 660-729 143-212 (412)
171 2xgj_A ATP-dependent RNA helic 64.2 3.2 0.00011 53.8 3.4 61 163-266 83-148 (1010)
172 1e0m_A Wwprototype; SH3 protot 64.0 5 0.00017 29.3 3.0 33 188-220 3-35 (37)
173 2xb1_A Pygopus homolog 2, B-ce 63.5 2.4 8.4E-05 39.2 1.5 31 432-462 16-56 (105)
174 3iuy_A Probable ATP-dependent 63.2 5.7 0.00019 41.4 4.5 38 166-246 42-79 (228)
175 2ysi_A Transcription elongatio 62.1 5.2 0.00018 30.1 2.8 31 189-219 8-38 (40)
176 3dkp_A Probable ATP-dependent 61.7 6.4 0.00022 41.6 4.6 21 226-246 68-88 (245)
177 3kv5_D JMJC domain-containing 61.0 2.1 7.3E-05 50.6 0.8 41 422-462 36-83 (488)
178 2zaj_A Membrane-associated gua 61.0 7.1 0.00024 30.8 3.5 37 185-221 10-46 (49)
179 2ysh_A GAS-7, growth-arrest-sp 60.3 6.9 0.00023 29.2 3.2 33 187-219 6-38 (40)
180 1wr3_A Ubiquitin-protein ligas 60.1 7.3 0.00025 28.3 3.3 32 188-219 4-35 (36)
181 3sqw_A ATP-dependent RNA helic 57.7 5.4 0.00018 48.3 3.6 54 614-668 289-349 (579)
182 1i5h_W Rnedd4, ubiquitin ligas 57.3 8.9 0.0003 30.3 3.5 35 188-222 11-45 (50)
183 2kyk_A E3 ubiquitin-protein li 56.8 8.7 0.0003 28.5 3.2 32 188-219 6-37 (39)
184 1wr4_A Ubiquitin-protein ligas 56.3 8.8 0.0003 27.8 3.2 32 188-219 4-35 (36)
185 2ysb_A Salvador homolog 1 prot 56.3 9.4 0.00032 30.1 3.5 35 188-222 11-45 (49)
186 1c4o_A DNA nucleotide excision 56.2 11 0.00037 46.6 5.9 46 599-646 37-85 (664)
187 1wen_A Inhibitor of growth fam 56.0 4.3 0.00015 34.7 1.6 31 432-462 26-60 (71)
188 2law_A Yorkie homolog; YAP, SM 55.8 7.8 0.00027 28.7 2.8 32 188-219 6-37 (38)
189 2ysg_A Syntaxin-binding protei 54.6 11 0.00039 28.1 3.6 33 187-219 6-38 (40)
190 3c6w_A P28ING5, inhibitor of g 54.5 4.7 0.00016 33.1 1.6 31 432-462 19-53 (59)
191 2dmv_A Itchy homolog E3 ubiqui 54.4 12 0.0004 28.5 3.7 35 187-221 6-40 (43)
192 2l82_A Designed protein OR32; 54.4 38 0.0013 30.7 7.5 48 993-1040 4-51 (162)
193 1weu_A Inhibitor of growth fam 54.2 4.1 0.00014 36.6 1.3 31 432-462 46-80 (91)
194 2g6q_A Inhibitor of growth pro 53.5 5 0.00017 33.3 1.6 31 432-462 21-55 (62)
195 3ly5_A ATP-dependent RNA helic 53.4 8.9 0.00031 41.1 4.1 20 227-246 94-113 (262)
196 1ywi_A Formin-binding protein 52.9 6.5 0.00022 29.7 2.0 31 189-219 10-40 (41)
197 3pur_A Lysine-specific demethy 52.7 4.2 0.00014 47.9 1.3 33 429-461 52-88 (528)
198 3lqh_A Histone-lysine N-methyl 52.0 2.9 9.8E-05 42.8 -0.2 21 432-452 18-38 (183)
199 1e0n_A Hypothetical protein; Y 51.7 8.5 0.00029 26.3 2.2 26 192-218 2-27 (27)
200 3cpe_A Terminase, DNA packagin 49.9 24 0.00082 42.8 7.6 47 682-731 268-317 (592)
201 2ysf_A E3 ubiquitin-protein li 49.9 14 0.00046 27.7 3.3 33 187-219 6-38 (40)
202 3fmp_B ATP-dependent RNA helic 49.9 14 0.00049 43.2 5.4 68 660-729 210-279 (479)
203 3fho_A ATP-dependent RNA helic 48.9 3.2 0.00011 49.4 -0.4 67 660-729 235-303 (508)
204 2vnf_A ING 4, P29ING4, inhibit 48.0 6.9 0.00024 32.2 1.6 31 432-462 20-54 (60)
205 1wr7_A NEDD4-2; all-beta, liga 48.0 11 0.00037 28.4 2.6 33 187-219 7-39 (41)
206 2jmi_A Protein YNG1, ING1 homo 47.9 9.3 0.00032 34.2 2.5 31 432-462 36-70 (90)
207 3i5x_A ATP-dependent RNA helic 46.9 13 0.00043 44.7 4.4 20 227-246 114-133 (563)
208 2kpz_A E3 ubiquitin-protein li 46.6 13 0.00044 29.2 2.9 34 187-220 11-44 (49)
209 2djy_A SMAD ubiquitination reg 46.4 15 0.00052 27.8 3.2 33 188-220 7-39 (42)
210 1ymz_A CC45; artificial protei 46.2 13 0.00044 28.2 2.7 32 188-219 8-39 (43)
211 2ez5_W Dnedd4, E3 ubiquitin-pr 45.8 17 0.00058 28.1 3.4 34 187-220 9-42 (46)
212 3lfu_A DNA helicase II; SF1 he 43.6 54 0.0018 39.8 9.4 50 598-647 30-91 (647)
213 2jv4_A Peptidyl-prolyl CIS/tra 43.3 17 0.00058 29.2 3.1 33 188-220 7-40 (54)
214 3kv4_A PHD finger protein 8; e 42.9 3.8 0.00013 47.8 -1.1 31 432-462 17-51 (447)
215 3fe2_A Probable ATP-dependent 42.5 20 0.00068 37.6 4.6 20 227-246 69-88 (242)
216 2d7d_A Uvrabc system protein B 42.0 24 0.00083 43.4 5.9 41 599-639 41-84 (661)
217 2l4j_A YES-associated protein 41.7 20 0.00069 27.7 3.2 34 187-220 10-43 (46)
218 2ho2_A Fe65 protein, amyloid b 40.6 21 0.00071 26.5 3.0 32 188-220 3-34 (38)
219 2dwv_A Salvador homolog 1 prot 39.8 20 0.00068 28.2 3.0 35 187-221 12-46 (49)
220 1x4i_A Inhibitor of growth pro 39.6 8.1 0.00028 32.9 0.7 31 432-462 16-50 (70)
221 3syl_A Protein CBBX; photosynt 38.2 6.8 0.00023 42.8 0.1 13 688-700 131-143 (309)
222 2yse_A Membrane-associated gua 37.8 17 0.00059 29.9 2.4 34 186-219 11-44 (60)
223 2dk7_A Transcription elongatio 37.1 17 0.00059 31.0 2.3 30 191-220 20-49 (73)
224 1wmv_A WWOX, WW domain contain 37.1 33 0.0011 27.5 3.9 34 187-220 10-43 (54)
225 2dk1_A WW domain-binding prote 35.4 18 0.00063 28.5 2.1 30 191-220 7-36 (50)
226 2e45_A Fe65 protein, amyloid b 34.7 24 0.00081 28.4 2.6 34 186-220 17-50 (55)
227 3hjh_A Transcription-repair-co 34.4 48 0.0016 39.1 6.5 71 599-672 23-114 (483)
228 2e31_A FBS1, F-box only protei 34.3 11 0.00037 41.5 0.9 50 109-158 38-88 (297)
229 2jmf_A E3 ubiquitin-protein li 33.0 33 0.0011 27.4 3.3 34 187-220 17-50 (53)
230 2ysc_A Amyloid beta A4 precurs 32.9 27 0.00094 26.0 2.6 32 187-219 7-38 (39)
231 3bos_A Putative DNA replicatio 32.6 1.5E+02 0.0052 30.0 9.6 44 687-730 104-150 (242)
232 3l2o_B F-box only protein 4; s 32.2 8.8 0.0003 42.2 -0.3 40 120-159 3-42 (312)
233 3ipz_A Monothiol glutaredoxin- 32.1 98 0.0034 28.1 7.0 59 990-1048 16-80 (109)
234 2o0j_A Terminase, DNA packagin 31.2 30 0.001 39.6 3.9 47 682-731 268-317 (385)
235 3l9o_A ATP-dependent RNA helic 30.8 23 0.00078 46.4 3.2 40 226-265 201-245 (1108)
236 2ysd_A Membrane-associated gua 29.9 38 0.0013 27.5 3.2 34 187-220 13-46 (57)
237 2j48_A Two-component sensor ki 29.7 69 0.0024 28.0 5.6 27 993-1019 3-29 (119)
238 3crv_A XPD/RAD3 related DNA he 28.8 1E+02 0.0035 36.7 8.3 85 990-1083 392-484 (551)
239 1u6t_A SH3 domain-binding glut 28.5 96 0.0033 29.2 6.3 34 1005-1038 20-53 (121)
240 3zyw_A Glutaredoxin-3; metal b 28.5 1.2E+02 0.0042 27.6 7.0 59 990-1048 14-78 (111)
241 2jxw_A WW domain-binding prote 27.6 32 0.0011 29.4 2.6 31 189-219 44-74 (75)
242 1l8q_A Chromosomal replication 27.4 54 0.0018 35.9 5.1 39 688-726 99-139 (324)
243 2l5f_A PRE-mRNA-processing fac 25.7 35 0.0012 30.5 2.5 33 188-220 11-43 (92)
244 3cg4_A Response regulator rece 25.5 2.8E+02 0.0094 25.2 9.2 79 989-1074 5-94 (142)
245 3gx8_A Monothiol glutaredoxin- 25.0 1.8E+02 0.006 27.0 7.5 60 990-1049 14-82 (121)
246 1jmq_A YAP65, 65 kDa YES-assoc 24.9 63 0.0021 24.7 3.5 34 186-219 6-39 (46)
247 2wem_A Glutaredoxin-related pr 24.5 1.9E+02 0.0066 26.7 7.6 59 990-1048 18-83 (118)
248 2kxq_A E3 ubiquitin-protein li 24.2 1E+02 0.0035 27.3 5.3 33 188-220 9-41 (90)
249 1wik_A Thioredoxin-like protei 24.1 1.6E+02 0.0056 26.4 7.0 58 990-1047 13-76 (109)
250 3tla_A MCCF; serine protease, 23.6 2.3E+02 0.0078 32.0 9.4 72 985-1057 37-123 (371)
251 2zj8_A DNA helicase, putative 23.6 28 0.00095 43.2 2.0 39 227-265 42-86 (720)
252 2wul_A Glutaredoxin related pr 23.1 2.2E+02 0.0074 26.6 7.6 64 990-1053 18-89 (118)
253 3a10_A Response regulator; pho 22.9 2E+02 0.0069 25.0 7.4 27 993-1019 3-29 (116)
254 1o6w_A PRP40, PRE-mRNA process 21.8 52 0.0018 27.9 2.8 30 191-220 43-72 (75)
255 2kxq_A E3 ubiquitin-protein li 21.7 58 0.002 28.9 3.1 33 188-220 55-87 (90)
256 3hdv_A Response regulator; PSI 21.4 3.5E+02 0.012 24.2 9.0 62 990-1057 6-69 (136)
257 3h5i_A Response regulator/sens 21.3 2.6E+02 0.0088 25.5 8.1 107 990-1112 4-119 (140)
258 1gm5_A RECG; helicase, replica 21.3 1.7E+02 0.0057 36.6 8.4 77 990-1067 416-497 (780)
259 2yan_A Glutaredoxin-3; oxidore 21.2 1.7E+02 0.0058 26.0 6.4 57 991-1047 16-78 (105)
260 2jxw_A WW domain-binding prote 20.6 44 0.0015 28.5 2.1 29 191-219 5-33 (75)
261 3h4m_A Proteasome-activating n 20.4 27 0.00093 37.4 0.8 13 687-699 110-122 (285)
262 1f62_A Transcription factor WS 20.4 32 0.0011 26.9 1.0 31 432-462 12-45 (51)
263 2p6r_A Afuhel308 helicase; pro 20.2 27 0.00092 43.2 0.8 40 226-265 42-86 (702)
264 3grc_A Sensor protein, kinase; 20.2 2.2E+02 0.0075 25.9 7.3 62 990-1058 5-68 (140)
265 2jx8_A Hpcif1, phosphorylated 20.1 52 0.0018 26.1 2.2 32 189-220 11-43 (52)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-65 Score=650.55 Aligned_cols=448 Identities=19% Similarity=0.298 Sum_probs=334.3
Q ss_pred cchhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh--------cCCEEEEECcccHHHHHHHH
Q 001098 561 FHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL--------SRATLIVVPSYLVDHWKTQI 632 (1158)
Q Consensus 561 ~~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~--------s~~tLIVvP~sLl~qW~~Ei 632 (1158)
.+++||..|+.+... .+.++.+||||| +||||||+|+++++. .+|+|||||.+|+.||.+||
T Consensus 236 ~Lr~yQ~egv~~l~~------~~~~~~~~ILad----emGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~ 305 (800)
T 3mwy_W 236 ELRDFQLTGINWMAF------LWSKGDNGILAD----EMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTF 305 (800)
T ss_dssp CCCTHHHHHHHHHHH------HHTTTCCEEECC----CTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH------HhhcCCCEEEEe----CCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHH
Confidence 366777777644331 234567899999 499999999999864 47999999999999999999
Q ss_pred HhhcCCCCeEEEEecCCCCcccc--------------cccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccc
Q 001098 633 QQHVRPGQLHLFVWTDHKKPSAH--------------SLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHT 698 (1158)
Q Consensus 633 ~k~~~~~~l~v~v~~g~~~~~~~--------------~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ 698 (1158)
.+|++. +++.+|+|....... .....+||+||||+++.+. ...|..+.|++||+||||+
T Consensus 306 ~~~~p~--~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~-----~~~l~~~~w~~vIvDEaH~ 378 (800)
T 3mwy_W 306 EKWAPD--LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD-----RAELGSIKWQFMAVDEAHR 378 (800)
T ss_dssp HHHSTT--CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT-----HHHHHTSEEEEEEETTGGG
T ss_pred HHHCCC--ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhh-----HHHHhcCCcceeehhhhhh
Confidence 999975 888888886542210 1234789999999999844 4567788999999999999
Q ss_pred cCCCchHHHHHHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhhhHHHHHHHH
Q 001098 699 LGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLL 778 (1158)
Q Consensus 699 ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~ 778 (1158)
+||..+ ..++++..+++.+||+|||||++|+ +.|||++++||.|+.|+. ...|... ............|+
T Consensus 379 lkn~~s--~~~~~l~~l~~~~rl~LTgTPiqN~----l~el~~ll~fL~p~~~~~-~~~~~~~---~~~~~~~~~~~~L~ 448 (800)
T 3mwy_W 379 LKNAES--SLYESLNSFKVANRMLITGTPLQNN----IKELAALVNFLMPGRFTI-DQEIDFE---NQDEEQEEYIHDLH 448 (800)
T ss_dssp GCCSSS--HHHHHHTTSEEEEEEEECSCCCSSC----SHHHHHHHHHHCSCCC-------------CCTTHHHHHHHHHH
T ss_pred hcCchh--HHHHHHHHhhhccEEEeeCCcCCCC----HHHHHHHHHHhCccccCc-hhhhccc---ccchhHHHHHHHHH
Confidence 999875 4566888999999999999999999 999999999999999985 3333211 11122344567899
Q ss_pred HHHHhHHhhhcccccc-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHH
Q 001098 779 QLLHRCMISARKTDLQ-TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNL 857 (1158)
Q Consensus 779 ~lL~~~mlRR~K~dv~-~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~L 857 (1158)
.++.++|+||+|+++. .||++.+.++.++||+.|+.+|+.+.......+... ........+..+..|
T Consensus 449 ~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~------------~~~~~~~~l~~l~~L 516 (800)
T 3mwy_W 449 RRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAG------------AKGGHFSLLNIMNEL 516 (800)
T ss_dssp HTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------------------CTHHHHHHHH
T ss_pred HHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhc------------cccchhhHHHHHHHH
Confidence 9999999999999986 699999999999999999999998876422211110 011123456778999
Q ss_pred HHHccccCCccccccchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccC
Q 001098 858 RLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQ 937 (1158)
Q Consensus 858 R~~c~h~~~~~~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~ 937 (1158)
|++|+||.++.... +..... ...
T Consensus 517 rk~~~hp~l~~~~~---------~~~~~~-~~~----------------------------------------------- 539 (800)
T 3mwy_W 517 KKASNHPYLFDNAE---------ERVLQK-FGD----------------------------------------------- 539 (800)
T ss_dssp HHHHHCGGGSSSHH---------HHHCCC-C-------------------------------------------------
T ss_pred HHHhcChhhhcchH---------HHHHHh-ccc-----------------------------------------------
Confidence 99999997653210 000000 000
Q ss_pred CccccCCCCCCCCCCCCChhhhhhccccccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCe
Q 001098 938 SPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIK 1017 (1158)
Q Consensus 938 ~~e~l~~~~~~~~~~~~~~~lie~~~~~~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~ 1017 (1158)
.. .......+.. ...+++..++..++.. ....++|+||||||+.++++|+++|...|++
T Consensus 540 ------------~~-~~~~~~~~~l----~~~s~K~~~L~~lL~~----~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~ 598 (800)
T 3mwy_W 540 ------------GK-MTRENVLRGL----IMSSGKMVLLDQLLTR----LKKDGHRVLIFSQMVRMLDILGDYLSIKGIN 598 (800)
T ss_dssp ---------------CCSHHHHHHH----HHTCHHHHHHHHHHHH----HTTTTCCEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred ------------cc-ccHHHHHHHh----hhcChHHHHHHHHHHH----HhhCCCeEEEEechHHHHHHHHHHHHhCCCC
Confidence 00 0000000000 0112333333333322 2457899999999999999999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHHhccCCC--eeEEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEE
Q 001098 1018 FAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVE 1095 (1158)
Q Consensus 1018 ~~~ldG~t~~~~R~~~i~~F~~~~~--~~VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~ 1095 (1158)
+.+++|+++..+|++++++|++++. +.+|++|++||+||||+.|++||+|||+|||+.+.||+||+||+||+++|+||
T Consensus 599 ~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 678 (800)
T 3mwy_W 599 FQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVY 678 (800)
T ss_dssp CEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEE
Confidence 9999999999999999999998654 35677779999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHhHHHHHHHHhhh
Q 001098 1096 TLAMRGTVEEQMLEFLQDTDRCRRLLKEEL 1125 (1158)
Q Consensus 1096 rLi~~~TIEE~Il~~l~~K~~l~~~v~~~~ 1125 (1158)
+|+++|||||+|++++..|..+.+.+.+..
T Consensus 679 rlv~~~TiEe~i~~~~~~K~~l~~~vi~~~ 708 (800)
T 3mwy_W 679 RLVSKDTVEEEVLERARKKMILEYAIISLG 708 (800)
T ss_dssp EEEETTSHHHHHHHHHHHHTTSCC------
T ss_pred EEecCCCHHHHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999998877766544
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.3e-64 Score=629.56 Aligned_cols=476 Identities=19% Similarity=0.276 Sum_probs=354.7
Q ss_pred ccchhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHhc------------CCEEEEECcccHHH
Q 001098 560 GFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLS------------RATLIVVPSYLVDH 627 (1158)
Q Consensus 560 ~~~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~s------------~~tLIVvP~sLl~q 627 (1158)
..+++||.+|+.+..+.-..+ ...++.|||||| +||+|||+|+++++.. +++|||||.+|+.|
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~-~~~~~~g~ILad----~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~q 128 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGR-RIENSYGCIMAD----EMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRN 128 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTS-SSTTCCEEEECC----CTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcc-cccCCCCeEeee----CCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHH
Confidence 458999999997655431100 113567899998 5999999999998742 45999999999999
Q ss_pred HHHHHHhhcCCCCeEEEEecCCCCcc-cc---cc------cCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEcccc
Q 001098 628 WKTQIQQHVRPGQLHLFVWTDHKKPS-AH---SL------AWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGH 697 (1158)
Q Consensus 628 W~~Ei~k~~~~~~l~v~v~~g~~~~~-~~---~l------~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH 697 (1158)
|.+||.+|++. .+.++.+++..+.. .. .. ...++|+||||+++... ...+....|++||+||||
T Consensus 129 W~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~-----~~~l~~~~~~~vI~DEaH 202 (644)
T 1z3i_X 129 WYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLH-----AEVLHKGKVGLVICDEGH 202 (644)
T ss_dssp HHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHH-----TTTTTTSCCCEEEETTGG
T ss_pred HHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhh-----HHHhhcCCccEEEEECce
Confidence 99999999875 35555554432211 11 11 12589999999999854 456778899999999999
Q ss_pred ccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhhh-------
Q 001098 698 TLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEM------- 770 (1158)
Q Consensus 698 ~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~------- 770 (1158)
++||.. +..++++..+++.+||+|||||++|+ +.|||++++||+|+++++ ...|.+.|..|+..+.
T Consensus 203 ~ikn~~--~~~~~al~~l~~~~rl~LTgTPiqN~----l~El~sll~fl~p~~l~~-~~~F~~~f~~pi~~~~~~~~~~~ 275 (644)
T 1z3i_X 203 RLKNSD--NQTYLALNSMNAQRRVLISGTPIQND----LLEYFSLVHFVNSGILGT-AQEFKKRFEIPILKGRDADASDK 275 (644)
T ss_dssp GCCTTC--HHHHHHHHHHCCSEEEEECSSCSGGG----GGGCHHHHHHHHHHHHCC-HHHHHHHTHHHHHHHHSTTCCSH
T ss_pred ecCChh--hHHHHHHHhcccCcEEEEecCcccCC----HHHHHHHHHhhCCCcCCC-HHHHHHhhcchhhhcCCcCCCHH
Confidence 999987 45567888999999999999999999 999999999999999996 7889999988875432
Q ss_pred -----HHHHHHHHHHHHhHHhhhcccccc-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCc
Q 001098 771 -----EEGRSRLLQLLHRCMISARKTDLQ-TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNP 844 (1158)
Q Consensus 771 -----~~~~~~L~~lL~~~mlRR~K~dv~-~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~ 844 (1158)
......|..++.++|+||++.++. .||++.+.+++++||+.|+++|+.+......... +...
T Consensus 276 ~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~------------~~~g 343 (644)
T 1z3i_X 276 DRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVES------------LQTG 343 (644)
T ss_dssp HHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGS------------SCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHH------------HhcC
Confidence 234567888999999999999875 7999999999999999999999988765432110 1111
Q ss_pred hhhhhHHHHHHHHHHHccccCCccccccchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCC
Q 001098 845 KQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEK 924 (1158)
Q Consensus 845 ~~~~~~~~~l~~LR~~c~h~~~~~~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~ 924 (1158)
+.....+..+..||++|+||.++.. ......... .
T Consensus 344 ~~~~~~l~~l~~Lrk~c~hp~l~~~------------~~~~~~~~~---------------~------------------ 378 (644)
T 1z3i_X 344 KISVSSLSSITSLKKLCNHPALIYE------------KCLTGEEGF---------------D------------------ 378 (644)
T ss_dssp CCCHHHHHHHHHHHHHHHCTHHHHH------------HHHHTCTTC---------------T------------------
T ss_pred ccchhHHHHHHHHHHHhCCHHHHHH------------HHhcccchh---------------h------------------
Confidence 2223456678999999999864321 000000000 0
Q ss_pred CCCCCCCcccccCCccccCCCCCCCCCCCCChhhhhhccccccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHH
Q 001098 925 CSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHI 1004 (1158)
Q Consensus 925 ~~~p~C~~~~~~~~~e~l~~~~~~~~~~~~~~~lie~~~~~~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~l 1004 (1158)
.+...+ +.+.... .. ....+++..+...++... ...+++|+||||+|+.++
T Consensus 379 ----~~~~~~----------~~~~~~~-----~~-------~~~~s~K~~~l~~ll~~~---~~~~~~k~lIFs~~~~~~ 429 (644)
T 1z3i_X 379 ----GALDLF----------PQNYSTK-----AV-------EPQLSGKMLVLDYILAMT---RTTTSDKVVLVSNYTQTL 429 (644)
T ss_dssp ----TGGGTS----------CSSCCSS-----SC-------CGGGSHHHHHHHHHHHHH---HHHCCCEEEEEESCHHHH
T ss_pred ----hHHhhc----------ccccccc-----cc-------CcccChHHHHHHHHHHHH---hhcCCCEEEEEEccHHHH
Confidence 000000 0000000 00 001133333333333321 124689999999999999
Q ss_pred HHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCe--eEEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhc
Q 001098 1005 HVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC--LALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISR 1082 (1158)
Q Consensus 1005 d~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~--~VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigR 1082 (1158)
++|+..|...|+.+.+++|+++.++|++++++|++++.. .+|+++++||+||||+.|++||+|||+|||+.+.||+||
T Consensus 430 ~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR 509 (644)
T 1z3i_X 430 DLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMAR 509 (644)
T ss_dssp HHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHh
Confidence 999999999999999999999999999999999987653 567777999999999999999999999999999999999
Q ss_pred ccccCCCCcEEEEEEEeCCCHHHHHHHHHHHhHHHHHHHHhhhcCcccccccccCCHhhhhh
Q 001098 1083 AHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAE 1144 (1158)
Q Consensus 1083 ahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K~~l~~~v~~~~~~~~~~~~~~~~~l~dl~~ 1144 (1158)
+||+||+++|+||+|++.|||||+|++++..|..+...+.++ + .......+.+||.+
T Consensus 510 ~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~----~-~~~~~~~~~~~l~~ 566 (644)
T 1z3i_X 510 VWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDE----E-QDVERHFSLGELRE 566 (644)
T ss_dssp SSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSC----S-SSCCCSSCHHHHHH
T ss_pred hhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcC----c-chhhcCCCHHHHHH
Confidence 999999999999999999999999999999998654444332 1 12234556666544
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3.1e-59 Score=568.23 Aligned_cols=426 Identities=19% Similarity=0.310 Sum_probs=339.6
Q ss_pred cchhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHhc-------CCEEEEECcccHHHHHHHHH
Q 001098 561 FHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLS-------RATLIVVPSYLVDHWKTQIQ 633 (1158)
Q Consensus 561 ~~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~s-------~~tLIVvP~sLl~qW~~Ei~ 633 (1158)
.+++||.+|+.+.... +..+.+|||+| +||+|||+++++++.. +++|||||.+|+.||.+||+
T Consensus 37 ~L~~~Q~~~v~~l~~~------~~~~~~~ilad----~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~ 106 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFM------NKLGFGICLAD----DMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELS 106 (500)
T ss_dssp CCCHHHHHHHHHHHHH------HHTTCCEEECC----CTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH------hhCCCCEEEEe----CCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHHHHHHHHHHHH
Confidence 3677777776443211 12346789988 5999999999998642 69999999999999999999
Q ss_pred hhcCCCCeEEEEecCCCCcccccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHH
Q 001098 634 QHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI 713 (1158)
Q Consensus 634 k~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~ 713 (1158)
+|++. +++.++++.... .....+||||+||+++.+.. .+....|++||+||||+++|..+ ..++++.
T Consensus 107 ~~~~~--~~v~~~~g~~~~---~~~~~~~ivi~t~~~l~~~~------~l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~ 173 (500)
T 1z63_A 107 KFAPH--LRFAVFHEDRSK---IKLEDYDIILTTYAVLLRDT------RLKEVEWKYIVIDEAQNIKNPQT--KIFKAVK 173 (500)
T ss_dssp HHCTT--SCEEECSSSTTS---CCGGGSSEEEEEHHHHTTCH------HHHTCCEEEEEEETGGGGSCTTS--HHHHHHH
T ss_pred HHCCC--ceEEEEecCchh---ccccCCcEEEeeHHHHhccc------hhcCCCcCEEEEeCccccCCHhH--HHHHHHH
Confidence 99875 788888876532 22347999999999998542 26778999999999999999874 4566788
Q ss_pred HcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhhhHHHHHHHHHHHHhHHhhhcccc-
Q 001098 714 SLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTD- 792 (1158)
Q Consensus 714 ~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~lL~~~mlRR~K~d- 792 (1158)
.+.+.+||+|||||++|+ +.|||++++||+|+++++ ...|.+.|..|+..+......+|..++.++++||++.+
T Consensus 174 ~l~~~~~l~LTaTP~~n~----~~el~~ll~~l~p~~~~~-~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~ 248 (500)
T 1z63_A 174 ELKSKYRIALTGTPIENK----VDDLWSIMTFLNPGLLGS-YSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDK 248 (500)
T ss_dssp TSCEEEEEEECSSCSTTC----HHHHHHHHHHHSTTTTCC-HHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCH
T ss_pred hhccCcEEEEecCCCCCC----HHHHHHHHHHhCCCcCCC-HHHHHHHhccccccccHHHHHHHHHHHhhHeeeeccccc
Confidence 899999999999999999 999999999999999996 88999999999988888888899999999999999986
Q ss_pred --cccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccccCCcccc
Q 001098 793 --LQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVT 870 (1158)
Q Consensus 793 --v~~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h~~~~~~~ 870 (1158)
..+||++.+.+++++|++.|+..|+.+.+.....+... ............+.+||++|+||......
T Consensus 249 ~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~lr~~~~~p~l~~~~ 317 (500)
T 1z63_A 249 AIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSV-----------TGIKRKGMILSTLLKLKQIVDHPALLKGG 317 (500)
T ss_dssp HHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTC-----------CTHHHHHHHHHHHHHHHHHTTCTHHHHCS
T ss_pred chhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhh-----------hcccchHHHHHHHHHHHHHhCCHHHhcCc
Confidence 35899999999999999999999998877654332110 01122334566788999999987532100
Q ss_pred ccchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCccccCCCCCCCC
Q 001098 871 DAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNP 950 (1158)
Q Consensus 871 ~~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l~~~~~~~~ 950 (1158)
. ..
T Consensus 318 ~-----------------~~------------------------------------------------------------ 320 (500)
T 1z63_A 318 E-----------------QS------------------------------------------------------------ 320 (500)
T ss_dssp C-----------------CC------------------------------------------------------------
T ss_pred c-----------------ch------------------------------------------------------------
Confidence 0 00
Q ss_pred CCCCChhhhhhccccccccCch-HHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHC-CCeEEEEeCCCCHH
Q 001098 951 KWPVPQDLIELQPSYRQWSNTN-TFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVA-GIKFAGMYSPMHSS 1028 (1158)
Q Consensus 951 ~~~~~~~lie~~~~~~~~~s~~-~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~-gi~~~~ldG~t~~~ 1028 (1158)
. -.+.+ ..+.+.+.. ...+++|+|||++|..+++.|++.|... |+.+..++|+++.+
T Consensus 321 --------~--------~~s~K~~~l~~~l~~-----~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~ 379 (500)
T 1z63_A 321 --------V--------RRSGKMIRTMEIIEE-----ALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKK 379 (500)
T ss_dssp --------S--------TTCHHHHHHHHHHHH-----HHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHH
T ss_pred --------h--------hcchhHHHHHHHHHH-----HHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHH
Confidence 0 00111 111222211 1347899999999999999999999986 99999999999999
Q ss_pred HHHHHHHHhccCCCee-EEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHH
Q 001098 1029 NKIKSLDMFRHDASCL-ALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107 (1158)
Q Consensus 1029 ~R~~~i~~F~~~~~~~-VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~I 1107 (1158)
+|++++++|++++.+. +|++++++|+||||+.|++||++||+|||+.+.||+||+||+||+++|+||+|++++|+||+|
T Consensus 380 ~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i 459 (500)
T 1z63_A 380 ERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKI 459 (500)
T ss_dssp HHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHT
T ss_pred HHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHH
Confidence 9999999999986665 566669999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHh
Q 001098 1108 LEFLQDTDRCRRLLKE 1123 (1158)
Q Consensus 1108 l~~l~~K~~l~~~v~~ 1123 (1158)
+++++.|..+.+.+.+
T Consensus 460 ~~~~~~K~~l~~~~~~ 475 (500)
T 1z63_A 460 DQLLAFKRSLFKDIIS 475 (500)
T ss_dssp HHHHTTCSSSSSSGGG
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999855444443
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=6.8e-43 Score=452.86 Aligned_cols=410 Identities=15% Similarity=0.179 Sum_probs=297.6
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHhc-------CCEEEEECcccHHHHHHHHHh
Q 001098 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLS-------RATLIVVPSYLVDHWKTQIQQ 634 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~s-------~~tLIVvP~sLl~qW~~Ei~k 634 (1158)
+++||..++.+.+.. ...++||+| +||+|||+++++++.. +++|||||.+|+.||..||.+
T Consensus 154 LrpyQ~eav~~~l~~--------~~~~~LLad----~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 154 LIPHQLNIAHDVGRR--------HAPRVLLAD----EVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLR 221 (968)
T ss_dssp CCHHHHHHHHHHHHS--------SSCEEEECC----CTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh--------cCCCEEEEC----CCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHHHHH
Confidence 789999998765543 234678888 5999999999988642 489999999999999999999
Q ss_pred hcCCCCeEEEEecCCCCc----ccccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHH-HHH
Q 001098 635 HVRPGQLHLFVWTDHKKP----SAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLT-NKL 709 (1158)
Q Consensus 635 ~~~~~~l~v~v~~g~~~~----~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t-~~~ 709 (1158)
+++ +++.++++.... ........+||||+||+++.+.. .....+....|++||+||||+++|..+.. ..+
T Consensus 222 ~f~---l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~--~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~ 296 (968)
T 3dmq_A 222 RFN---LRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSK--QRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREY 296 (968)
T ss_dssp HSC---CCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTST--TTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHH
T ss_pred HhC---CCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCH--HHHHHhhhcCCCEEEehhhHhhcCCCCcchHHH
Confidence 985 667777654321 11122347899999999997431 11234667799999999999999876431 224
Q ss_pred HHHHHc--ccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhh------------------
Q 001098 710 QMAISL--TASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAE------------------ 769 (1158)
Q Consensus 710 ~~~~~L--~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~------------------ 769 (1158)
+.+..+ ++.++|+|||||++|+ +.|+|++++||+|+.|++ ...|...+.......
T Consensus 297 ~~l~~L~~~~~~~L~LTATPi~n~----~~el~sll~~L~p~~~~~-~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~ 371 (968)
T 3dmq_A 297 QAIEQLAEHVPGVLLLTATPEQLG----MESHFARLRLLDPNRFHD-FAQFVEEQKNYCPVADAVAMLLAGNKLSNDELN 371 (968)
T ss_dssp HHHHHHHTTCSSEEESCSSCSSSC----SSCTHHHHHHHCTTTCSS-THHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTT
T ss_pred HHHHHHhhcCCcEEEEEcCCccCC----HHHHHHHHHhcCccccCC-HHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHH
Confidence 556666 6888999999999999 999999999999999996 555554321110000
Q ss_pred -------------------------hHHHHHHHHHHH-----HhHHhhhcccccccCCCceEEEEEecCCHHHHHHHHHH
Q 001098 770 -------------------------MEEGRSRLLQLL-----HRCMISARKTDLQTIPLCIKEVTFLNFTEEHAGTYNEL 819 (1158)
Q Consensus 770 -------------------------~~~~~~~L~~lL-----~~~mlRR~K~dv~~LPpk~e~vv~v~lS~~q~~~Y~~l 819 (1158)
.......+..++ .++++|+++..+..+|++....+.+++++.++..|+..
T Consensus 372 ~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~ 451 (968)
T 3dmq_A 372 MLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVS 451 (968)
T ss_dssp SSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHH
T ss_pred HHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHH
Confidence 001111222222 23567777888889999999999999999999888642
Q ss_pred HHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccccCCccccccchhHHHHHHHHHHcCCCcchHHHHHHH
Q 001098 820 VVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIK 899 (1158)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h~~~~~~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l~ 899 (1158)
... .... .+.. .. .. +.++..
T Consensus 452 ~~~--------~~~~---~~~~---~~-------~~-----~l~pe~--------------------------------- 472 (968)
T 3dmq_A 452 GIM--------GARK---SAED---RA-------RD-----MLYPER--------------------------------- 472 (968)
T ss_dssp HHT--------TCCS---SGGG---GT-------HH-----HHCSGG---------------------------------
T ss_pred hhh--------hhhh---hhHH---HH-------hh-----hcChHH---------------------------------
Confidence 110 0000 0000 00 00 000000
Q ss_pred HhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCccccCCCCCCCCCCCCChhhhhhccccccccCch---HHHH
Q 001098 900 YNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTN---TFLK 976 (1158)
Q Consensus 900 ~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l~~~~~~~~~~~~~~~lie~~~~~~~~~s~~---~~L~ 976 (1158)
.....+. ....|...+ ..|.
T Consensus 473 ------------------------------------------~~~~l~~---------------~~~~~~~~~~K~~~L~ 495 (968)
T 3dmq_A 473 ------------------------------------------IYQEFEG---------------DNATWWNFDPRVEWLM 495 (968)
T ss_dssp ------------------------------------------GTTTTTS---------------SSCCTTTTSHHHHHHH
T ss_pred ------------------------------------------HHHHhhh---------------hhhcccCccHHHHHHH
Confidence 0000000 000011111 1222
Q ss_pred HHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHH-CCCeEEEEeCCCCHHHHHHHHHHhccCC-CeeEEEEeCcccc
Q 001098 977 QDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTV-AGIKFAGMYSPMHSSNKIKSLDMFRHDA-SCLALLMDGSASL 1054 (1158)
Q Consensus 977 ~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~-~gi~~~~ldG~t~~~~R~~~i~~F~~~~-~~~VLL~s~agg~ 1054 (1158)
..+. ..++.|+|||+++..+++.|.+.|.. .|+++..++|+++..+|.+++++|++++ .+.|||+|.++++
T Consensus 496 ~ll~-------~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~ 568 (968)
T 3dmq_A 496 GYLT-------SHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSE 568 (968)
T ss_dssp HHHH-------HTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTC
T ss_pred HHHH-------hCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhc
Confidence 2221 25789999999999999999999995 6999999999999999999999999886 6899999999999
Q ss_pred ccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHHhHH
Q 001098 1055 GLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDR 1116 (1158)
Q Consensus 1055 GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K~~ 1116 (1158)
|+|++.|++||+||++|||....|++||++|+||++.|+||+++.++|+|++|++.+.+|.+
T Consensus 569 GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~ 630 (968)
T 3dmq_A 569 GRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLD 630 (968)
T ss_dssp SSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTC
T ss_pred CCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999988764
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.4e-37 Score=366.65 Aligned_cols=453 Identities=15% Similarity=0.104 Sum_probs=265.8
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh------cCCEEEEECc-ccHHHHHHHHHh
Q 001098 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL------SRATLIVVPS-YLVDHWKTQIQQ 634 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~------s~~tLIVvP~-sLl~qW~~Ei~k 634 (1158)
+++||..++.+.+. . ++|+++ +||+|||++++.++. .+++|||||. +|+.||.+|+.+
T Consensus 10 l~~~Q~~~i~~~~~---------~--~~ll~~----~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~ 74 (494)
T 1wp9_A 10 PRIYQEVIYAKCKE---------T--NCLIVL----PTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRR 74 (494)
T ss_dssp CCHHHHHHHHHGGG---------S--CEEEEC----CTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhh---------C--CEEEEc----CCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHH
Confidence 78999999855332 1 678887 599999999988753 4799999997 899999999999
Q ss_pred hcCCCCeEEEEecCCCCccc-ccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHH
Q 001098 635 HVRPGQLHLFVWTDHKKPSA-HSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI 713 (1158)
Q Consensus 635 ~~~~~~l~v~v~~g~~~~~~-~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~ 713 (1158)
+++....++.+++|...... ......++|+|+||+++...... ..+....|++||+||||++++..+.......+.
T Consensus 75 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~---~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~ 151 (494)
T 1wp9_A 75 LFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA---GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYK 151 (494)
T ss_dssp HBCSCGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT---TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred HhCcchhheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhc---CCcchhhceEEEEECCcccCCCCcHHHHHHHHH
Confidence 98644458888888654332 22234789999999999876542 345567899999999999997654333332222
Q ss_pred -HcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCC---CchHHHhhhccCc----chhhhHHHHHHHHHHHHhHH
Q 001098 714 -SLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYG---QNQKAWDGGILRP----FEAEMEEGRSRLLQLLHRCM 785 (1158)
Q Consensus 714 -~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~---~~~~~f~~~~~~p----~~~~~~~~~~~L~~lL~~~m 785 (1158)
..+..++|+|||||. |+ ..+++.++.++...... .........+... .....+.....+...+...+
T Consensus 152 ~~~~~~~~l~lTaTp~-~~----~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (494)
T 1wp9_A 152 RQAKNPLVIGLTASPG-ST----PEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREML 226 (494)
T ss_dssp HHCSSCCEEEEESCSC-SS----HHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEecCCC-CC----cHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHH
Confidence 345788999999999 66 67788888877654332 1111111111000 00111223344555555555
Q ss_pred hhhccccc--ccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccc
Q 001098 786 ISARKTDL--QTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCV 863 (1158)
Q Consensus 786 lRR~K~dv--~~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h 863 (1158)
.++.+... .-+++.. ..++..+.. .+...+...+........... .....+..++.....
T Consensus 227 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 288 (494)
T 1wp9_A 227 RDALKPLAETGLLESSS-----PDIPKKEVL---RAGQIINEEMAKGNHDLRGLL----------LYHAMALKLHHAIEL 288 (494)
T ss_dssp HHHHHHHHHHTSSSCCC-----TTSCHHHHH---HHHHHHHHHHTTTCCSTTTHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccC-----CCcchhHHH---HHHHHHHHHhhccccchhhHH----------HHHHHHHHHHHHHHH
Confidence 55544332 1233321 122222211 111111111111000000000 000001111111000
Q ss_pred cCCccccccchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCccccC
Q 001098 864 AGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILT 943 (1158)
Q Consensus 864 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l~ 943 (1158)
. ...........+..+.+............+. +..-
T Consensus 289 ~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------~~~~-------------------------- 324 (494)
T 1wp9_A 289 L----ETQGLSALRAYIKKLYEEAKAGSTKASKEIF--------------SDKR-------------------------- 324 (494)
T ss_dssp H----HHTCHHHHHHHHHHHHHHHHTTCCHHHHHHH--------------TSHH--------------------------
T ss_pred H----HhhcHHHHHHHHHHHHHhhccccchhhhhhh--------------hhHH--------------------------
Confidence 0 0000111112222221110001111000000 0000
Q ss_pred CCCCCCCCCCCChhhhhhcccccc--ccCch-HHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEE
Q 001098 944 RPENPNPKWPVPQDLIELQPSYRQ--WSNTN-TFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAG 1020 (1158)
Q Consensus 944 ~~~~~~~~~~~~~~lie~~~~~~~--~~s~~-~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ 1020 (1158)
....++....... ..+.+ ..|.+.+.... ...++.|+|||+++..+++.+.+.|...|+.+..
T Consensus 325 -----------~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~ 390 (494)
T 1wp9_A 325 -----------MKKAISLLVQAKEIGLDHPKMDKLKEIIREQL---QRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKR 390 (494)
T ss_dssp -----------HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH---HHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred -----------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh---ccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEE
Confidence 0000000000000 00111 12222222111 1157899999999999999999999999999999
Q ss_pred EeC--------CCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcE
Q 001098 1021 MYS--------PMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPI 1092 (1158)
Q Consensus 1021 ldG--------~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V 1092 (1158)
++| +++.++|++++++|+++. +.|||+|.++++|+||+.+++||++|++|||....|++||++|.|| +
T Consensus 391 ~~g~~~~~~~~~~~~~~r~~~~~~F~~~~-~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g 466 (494)
T 1wp9_A 391 FVGQASKENDRGLSQREQKLILDEFARGE-FNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---G 466 (494)
T ss_dssp ECCSSCC-------CCHHHHHHHHHHHTS-CSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---S
T ss_pred EeccccccccccCCHHHHHHHHHHHhcCC-ceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC---c
Confidence 999 899999999999999875 7899999999999999999999999999999999999999999998 8
Q ss_pred EEEEEEeCCCHHHHHHHHHHHhHHH
Q 001098 1093 HVETLAMRGTVEEQMLEFLQDTDRC 1117 (1158)
Q Consensus 1093 ~V~rLi~~~TIEE~Il~~l~~K~~l 1117 (1158)
.+|+|++++|+||+|+..+..|.++
T Consensus 467 ~~~~l~~~~t~ee~~~~~~~~k~~~ 491 (494)
T 1wp9_A 467 RVIILMAKGTRDEAYYWSSRQKEKI 491 (494)
T ss_dssp EEEEEEETTSHHHHHHHHCC-----
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988743
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-35 Score=330.66 Aligned_cols=231 Identities=19% Similarity=0.260 Sum_probs=158.1
Q ss_pred Hhhhcccccc-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccc
Q 001098 785 MISARKTDLQ-TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCV 863 (1158)
Q Consensus 785 mlRR~K~dv~-~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h 863 (1158)
-+||+|+++. +|||+.+.+++|+||+.|+++|+.+.......+... .. .......+..+.+||++|+|
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~-----~~------~~~~~~~l~~l~~Lrq~~~h 81 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSV-----TG------IKRKGMILSTLLKLKQIVDH 81 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTC-----CH------HHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhc-----cc------cchHHHHHHHHHHHHHHcCC
Confidence 4688899975 899999999999999999999999987765543211 00 01123456778999999999
Q ss_pred cCCccccccchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCccccC
Q 001098 864 AGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILT 943 (1158)
Q Consensus 864 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l~ 943 (1158)
|.++.... ...
T Consensus 82 P~l~~~~~---------------~~~------------------------------------------------------ 92 (271)
T 1z5z_A 82 PALLKGGE---------------QSV------------------------------------------------------ 92 (271)
T ss_dssp THHHHCSC---------------CCS------------------------------------------------------
T ss_pred HHHhcCCc---------------ccc------------------------------------------------------
Confidence 86432000 000
Q ss_pred CCCCCCCCCCCChhhhhhccccccccCch-HHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHC-CCeEEEE
Q 001098 944 RPENPNPKWPVPQDLIELQPSYRQWSNTN-TFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVA-GIKFAGM 1021 (1158)
Q Consensus 944 ~~~~~~~~~~~~~~lie~~~~~~~~~s~~-~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~-gi~~~~l 1021 (1158)
-.+.+ ..|.+.+... ..+++|+||||+|+.+++.|+..|... |+++..+
T Consensus 93 ------------------------~~s~K~~~L~~ll~~~-----~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l 143 (271)
T 1z5z_A 93 ------------------------RRSGKMIRTMEIIEEA-----LDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFL 143 (271)
T ss_dssp ------------------------TTCHHHHHHHHHHHHH-----HHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEE
T ss_pred ------------------------ccCHHHHHHHHHHHHH-----HhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEE
Confidence 00111 1222222211 236799999999999999999999985 9999999
Q ss_pred eCCCCHHHHHHHHHHhccCCCee-EEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeC
Q 001098 1022 YSPMHSSNKIKSLDMFRHDASCL-ALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMR 1100 (1158)
Q Consensus 1022 dG~t~~~~R~~~i~~F~~~~~~~-VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~ 1100 (1158)
+|+++.++|++++++|++++.+. +|++|++||+||||+.|++||+||++|||+.+.||+||+||+||+++|+||+|+++
T Consensus 144 ~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 144 YGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEET
T ss_pred ECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeC
Confidence 99999999999999999987766 45566999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHhh
Q 001098 1101 GTVEEQMLEFLQDTDRCRRLLKEE 1124 (1158)
Q Consensus 1101 ~TIEE~Il~~l~~K~~l~~~v~~~ 1124 (1158)
+||||+|++++..|..+.+.+.++
T Consensus 224 ~TiEe~i~~~~~~K~~l~~~~~~~ 247 (271)
T 1z5z_A 224 GTLEEKIDQLLAFKRSLFKDIISS 247 (271)
T ss_dssp TSHHHHHHHHHHHCHHHHTTGGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999998776666553
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.1e-32 Score=332.41 Aligned_cols=368 Identities=16% Similarity=0.138 Sum_probs=239.8
Q ss_pred cchhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh--cCCEEEEECc-ccHHHHHHHHHhhcC
Q 001098 561 FHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL--SRATLIVVPS-YLVDHWKTQIQQHVR 637 (1158)
Q Consensus 561 ~~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~--s~~tLIVvP~-sLl~qW~~Ei~k~~~ 637 (1158)
-+++||..++...... .++|+++ +||+|||++++.++. .+++|||||. .|+.||.+++.+| +
T Consensus 93 ~l~~~Q~~ai~~i~~~----------~~~ll~~----~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~-~ 157 (472)
T 2fwr_A 93 SLRDYQEKALERWLVD----------KRGCIVL----PTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIF-G 157 (472)
T ss_dssp CBCHHHHHHHHHHTTT----------TEEEEEC----CTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGG-C
T ss_pred CcCHHHHHHHHHHHhc----------CCEEEEe----CCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhC-C
Confidence 3789999998543322 2377777 599999999988764 4899999998 8999999999994 4
Q ss_pred CCCeE-EEEecCCCCcccccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcc
Q 001098 638 PGQLH-LFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLT 716 (1158)
Q Consensus 638 ~~~l~-v~v~~g~~~~~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~ 716 (1158)
++ +.+++|.... ..+|+|+||+.+..... . ..-.|++||+||+|++.+... . ..+..+.
T Consensus 158 ---~~~v~~~~g~~~~-------~~~Ivv~T~~~l~~~~~-----~-~~~~~~liIvDEaH~~~~~~~--~--~~~~~~~ 217 (472)
T 2fwr_A 158 ---EEYVGEFSGRIKE-------LKPLTVSTYDSAYVNAE-----K-LGNRFMLLIFDEVHHLPAESY--V--QIAQMSI 217 (472)
T ss_dssp ---GGGEEEBSSSCBC-------CCSEEEEEHHHHHHTHH-----H-HTTTCSEEEEETGGGTTSTTT--H--HHHHTCC
T ss_pred ---CcceEEECCCcCC-------cCCEEEEEcHHHHHHHH-----H-hcCCCCEEEEECCcCCCChHH--H--HHHHhcC
Confidence 56 7778775532 57899999999875432 1 123599999999999998652 1 2455678
Q ss_pred cCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhhhHHHHHHHHHHHHhHHhhhcccccc--
Q 001098 717 ASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQ-- 794 (1158)
Q Consensus 717 a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~lL~~~mlRR~K~dv~-- 794 (1158)
+.++++|||||.+++ -.+ ..+..++.+..+. ....++.
T Consensus 218 ~~~~l~lSATp~~~~----~~~-~~l~~~~~~~~~~-----------------------------------~~~~~l~~~ 257 (472)
T 2fwr_A 218 APFRLGLTATFERED----GRH-EILKEVVGGKVFE-----------------------------------LFPDSLAGK 257 (472)
T ss_dssp CSEEEEEESCCCCTT----SGG-GSHHHHTCCEEEE-----------------------------------CCHHHHTSC
T ss_pred CCeEEEEecCccCCC----CHH-HHHHHHhCCeEee-----------------------------------cCHHHHhcC
Confidence 899999999999877 211 1122223332221 1111211
Q ss_pred cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccccCCccccccch
Q 001098 795 TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGE 874 (1158)
Q Consensus 795 ~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h~~~~~~~~~~~ 874 (1158)
-+++.....+.+++++.++..|+.+...+...+.... . .+.. ..
T Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~-~~~~--------------------~~--------- 301 (472)
T 2fwr_A 258 HLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARG------I-TLRR--------------------AE--------- 301 (472)
T ss_dssp CCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCC------C-TTTC--------------------CS---------
T ss_pred cCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcC------c-cccc--------------------hh---------
Confidence 2667777788899999999999876554332110000 0 0000 00
Q ss_pred hHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCccccCCCCCCCCCCCC
Q 001098 875 DIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPV 954 (1158)
Q Consensus 875 ~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l~~~~~~~~~~~~ 954 (1158)
++. ..+.|. ...+.+.
T Consensus 302 ------------~~~--------------------~~~~~~---------~~~~~~~----------------------- 317 (472)
T 2fwr_A 302 ------------DFN--------------------KIVMAS---------GYDERAY----------------------- 317 (472)
T ss_dssp ------------SST--------------------TTTTTT---------CCSSSSS-----------------------
T ss_pred ------------hHH--------------------HHHHHh---------ccCHHHH-----------------------
Confidence 000 000000 0000000
Q ss_pred Chhhhhhcc--ccccccCch-HHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHH
Q 001098 955 PQDLIELQP--SYRQWSNTN-TFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKI 1031 (1158)
Q Consensus 955 ~~~lie~~~--~~~~~~s~~-~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~ 1031 (1158)
..+..... ....-.+.+ ..+.+.+. ..+++|+|||+++..+++.+.+.|. +..++|+++..+|+
T Consensus 318 -~~~~~~~~~~~~~~~~~~k~~~l~~~l~-------~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~ 384 (472)
T 2fwr_A 318 -EALRAWEEARRIAFNSKNKIRKLREILE-------RHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREERE 384 (472)
T ss_dssp -TTTHHHHHHHHHHHSCSHHHHHHHHHHH-------HTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHH
T ss_pred -HHHHHHHHHHHHhhcChHHHHHHHHHHH-------hCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHH
Confidence 00000000 000000111 22222221 2468999999999999999999884 44688999999999
Q ss_pred HHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCC-CcEEEEEEEeCCCHHHHHHHH
Q 001098 1032 KSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGAT-RPIHVETLAMRGTVEEQMLEF 1110 (1158)
Q Consensus 1032 ~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~-k~V~V~rLi~~~TIEE~Il~~ 1110 (1158)
+++++|+++ .+.||++|.++++|+|++.+++||++|++|||....|++||++|.||. +.|.||.|++++|+||+|.++
T Consensus 385 ~~~~~F~~g-~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~ 463 (472)
T 2fwr_A 385 EILEGFRTG-RFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARR 463 (472)
T ss_dssp THHHHHHHS-SCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-------
T ss_pred HHHHHHhCC-CCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHH
Confidence 999999985 578999999999999999999999999999999999999999999999 899999999999999999998
Q ss_pred HHHhHHH
Q 001098 1111 LQDTDRC 1117 (1158)
Q Consensus 1111 l~~K~~l 1117 (1158)
+++|.+.
T Consensus 464 r~~~~~~ 470 (472)
T 2fwr_A 464 RKNAAKG 470 (472)
T ss_dssp -------
T ss_pred HHHhhcc
Confidence 8877643
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.96 E-value=1.5e-28 Score=318.24 Aligned_cols=128 Identities=15% Similarity=0.116 Sum_probs=77.8
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHC------------CCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccc
Q 001098 988 KALPDKVIIFSQFLEHIHVIEQQLTVA------------GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLG 1055 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~------------gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~G 1055 (1158)
..+++|+|||++++.+++.|.+.|... |..+..++|+++..+|.+++++|++++.+.|||+|.++|+|
T Consensus 628 ~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eG 707 (936)
T 4a2w_A 628 YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEG 707 (936)
T ss_dssp SCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC----
T ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcC
Confidence 356899999999999999999999987 55666677889999999999999986678999999999999
Q ss_pred cCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHHhHHHHHH
Q 001098 1056 LDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRL 1120 (1158)
Q Consensus 1056 LNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K~~l~~~ 1120 (1158)
||++.+++||+||++|||....||+|| ||.+++.||.|++.+|+|++.+ +...|..+...
T Consensus 708 IDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~ 767 (936)
T 4a2w_A 708 IDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNK 767 (936)
T ss_dssp --CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHH
T ss_pred CcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHH
Confidence 999999999999999999999999999 6778899999999999999876 55555544333
No 9
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.96 E-value=8.6e-29 Score=303.61 Aligned_cols=132 Identities=15% Similarity=0.136 Sum_probs=73.5
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHC------------CCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCcccccc
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVA------------GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGL 1056 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~------------gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GL 1056 (1158)
.++.|+|||+++..+++.|.+.|... |..+..++|+++.++|.+++++|++++.+.|||+|.++++||
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCC
Confidence 56899999999999999999999876 555666677799999999999999866789999999999999
Q ss_pred CcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHHhHHHHHHHHhhh
Q 001098 1057 DLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEEL 1125 (1158)
Q Consensus 1057 NLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K~~l~~~v~~~~ 1125 (1158)
|++.+++||+||++|||....|++|| ||.+++.+|.|++++++|++ +.+...|..+.......+
T Consensus 468 Dip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~~i 531 (556)
T 4a2p_A 468 DIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEKI 531 (556)
T ss_dssp -----CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCcchHHH-HHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999 66688999999999999999 556666665544444333
No 10
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.96 E-value=5.9e-28 Score=295.76 Aligned_cols=122 Identities=17% Similarity=0.119 Sum_probs=86.4
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCC------------CeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCcccccc
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVAG------------IKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGL 1056 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~g------------i~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GL 1056 (1158)
.++.|+|||+++..+++.|.+.|...| ..+..++|+++.++|.+++++|++++.+.|||+|.++++||
T Consensus 387 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gl 466 (555)
T 3tbk_A 387 KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGI 466 (555)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCE
T ss_pred CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCC
Confidence 467999999999999999999999874 34555666999999999999999866788999999999999
Q ss_pred CcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHHhH
Q 001098 1057 DLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTD 1115 (1158)
Q Consensus 1057 NLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K~ 1115 (1158)
|++.+++||+||++|||....|++|| ||.+++.+|.|+++++++++. .+...|.
T Consensus 467 Dlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~~-~~~~~~e 520 (555)
T 3tbk_A 467 DIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEKE-KANMIKE 520 (555)
T ss_dssp ETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHHH-HHHHHHH
T ss_pred ccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHHH-HHhhHHH
Confidence 99999999999999999999999999 777999999999999998884 3444444
No 11
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.96 E-value=3.7e-28 Score=310.91 Aligned_cols=132 Identities=15% Similarity=0.136 Sum_probs=78.8
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHC------------CCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCcccccc
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVA------------GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGL 1056 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~------------gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GL 1056 (1158)
.++.|+|||+++..+++.|.+.|... |..+..++|+++..+|.+++++|++++.+.|||+|.++|+||
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCC
Confidence 56799999999999999999999874 566777788899999999999999866788999999999999
Q ss_pred CcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHHhHHHHHHHHhhh
Q 001098 1057 DLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEEL 1125 (1158)
Q Consensus 1057 NLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K~~l~~~v~~~~ 1125 (1158)
|++.+++||+||++|||....|++|| ||.+++.+|.|++.+++|++ +.+...|..+.......+
T Consensus 709 Dlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~l 772 (797)
T 4a2q_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEKI 772 (797)
T ss_dssp --CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCCcHHHH-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 66689999999999999999 566666665544443333
No 12
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.95 E-value=9.9e-27 Score=283.04 Aligned_cols=336 Identities=13% Similarity=0.107 Sum_probs=234.6
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHhc------CCEEEEECc-ccHHHHHHHHHh
Q 001098 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLS------RATLIVVPS-YLVDHWKTQIQQ 634 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~s------~~tLIVvP~-sLl~qW~~Ei~k 634 (1158)
+++||..++...+.. .++++++ ++|.|||++++..+.. +++|||||. .|+.||.+++.+
T Consensus 114 l~~~Q~~ai~~~~~~----------~~~ll~~----~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~ 179 (510)
T 2oca_A 114 PHWYQKDAVFEGLVN----------RRRILNL----PTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVD 179 (510)
T ss_dssp CCHHHHHHHHHHHHH----------SEEEEEC----CSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc----------CCcEEEe----CCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHH
Confidence 789999998665532 3467776 5999999998766532 389999997 689999999999
Q ss_pred hcCCCCeEEEEecCCCCcccccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHH
Q 001098 635 HVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS 714 (1158)
Q Consensus 635 ~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~ 714 (1158)
+......++..+++....... .....+|+|+||+.+.+. .....-.|++||+||+|++.+. .....+..
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~I~i~T~~~l~~~------~~~~~~~~~liIiDE~H~~~~~----~~~~il~~ 248 (510)
T 2oca_A 180 YRLFSHAMIKKIGGGASKDDK-YKNDAPVVVGTWQTVVKQ------PKEWFSQFGMMMNDECHLATGK----SISSIISG 248 (510)
T ss_dssp TTSSCGGGEEECGGGCCTTGG-GCTTCSEEEEEHHHHTTS------CGGGGGGEEEEEEETGGGCCHH----HHHHHGGG
T ss_pred hhcCCccceEEEecCCccccc-cccCCcEEEEeHHHHhhc------hhhhhhcCCEEEEECCcCCCcc----cHHHHHHh
Confidence 854333566666654433222 345789999999988733 1223347899999999999862 22233445
Q ss_pred c-ccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhhhHHHHHHHHHHHHhHHhhhccccc
Q 001098 715 L-TASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDL 793 (1158)
Q Consensus 715 L-~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~lL~~~mlRR~K~dv 793 (1158)
+ .+.++++||||| .+. ..+++.+..++++..+...... . + +-
T Consensus 249 ~~~~~~~l~lSATp-~~~----~~~~~~~~~~~~~~~~~~~~~~-----------~-----------~----------~~ 291 (510)
T 2oca_A 249 LNNCMFKFGLSGSL-RDG----KANIMQYVGMFGEIFKPVTTSK-----------L-----------M----------ED 291 (510)
T ss_dssp CTTCCEEEEEESCG-GGC----SSCHHHHHHHHCSEECCCCCC-------------------------------------
T ss_pred cccCcEEEEEEeCC-CCC----cccHHHhHHhhCCeEEeeCHHH-----------H-----------h----------hC
Confidence 5 677899999999 555 5677777777766443311000 0 0 00
Q ss_pred ccCCCceEEEEEecCCHHHHH-----HHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccccCCcc
Q 001098 794 QTIPLCIKEVTFLNFTEEHAG-----TYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIK 868 (1158)
Q Consensus 794 ~~LPpk~e~vv~v~lS~~q~~-----~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h~~~~~ 868 (1158)
..+++.....+.+.+++.+.. .|..... ....+.
T Consensus 292 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~---- 330 (510)
T 2oca_A 292 GQVTELKINSIFLRYPDEFTTKLKGKTYQEEIK-------------------------------------IITGLS---- 330 (510)
T ss_dssp ----CCEEEEEEEECCHHHHHHHTTCCHHHHHH-------------------------------------HHHTCH----
T ss_pred CcCCCceEEEEeecCChHHhccccccchHHHHH-------------------------------------HHhccH----
Confidence 136677777778888776541 1111000 000000
Q ss_pred ccccchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCccccCCCCCC
Q 001098 869 VTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENP 948 (1158)
Q Consensus 869 ~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l~~~~~~ 948 (1158)
..
T Consensus 331 ------------------------~~------------------------------------------------------ 332 (510)
T 2oca_A 331 ------------------------KR------------------------------------------------------ 332 (510)
T ss_dssp ------------------------HH------------------------------------------------------
T ss_pred ------------------------HH------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCChhhhhhccccccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHH
Q 001098 949 NPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSS 1028 (1158)
Q Consensus 949 ~~~~~~~~~lie~~~~~~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~ 1028 (1158)
...+.+.+... ....+.++|||+. ....+.|.+.|...+.++..++|+++..
T Consensus 333 -----------------------~~~l~~~l~~~----~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~ 384 (510)
T 2oca_A 333 -----------------------NKWIAKLAIKL----AQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTE 384 (510)
T ss_dssp -----------------------HHHHHHHHHHH----HTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHH
T ss_pred -----------------------HHHHHHHHHHH----HhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHH
Confidence 00000011100 1234667888888 8888889999999988999999999999
Q ss_pred HHHHHHHHhccCCCeeEEEEe-CccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCC-cEEEEEEEeCCCHHHH
Q 001098 1029 NKIKSLDMFRHDASCLALLMD-GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATR-PIHVETLAMRGTVEEQ 1106 (1158)
Q Consensus 1029 ~R~~~i~~F~~~~~~~VLL~s-~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k-~V~V~rLi~~~TIEE~ 1106 (1158)
+|+++++.|+++ .+.|||+| .+++.|+|++.+++||+++++||++...|++||++|.||.+ .|.||.++...+++++
T Consensus 385 ~r~~i~~~f~~g-~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~ 463 (510)
T 2oca_A 385 TRNIMKTLAENG-KGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPK 463 (510)
T ss_dssp HHHHHHHHHHHC-CSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCS
T ss_pred HHHHHHHHHhCC-CCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhh
Confidence 999999999966 46799999 99999999999999999999999999999999999999998 8999999998765544
Q ss_pred H
Q 001098 1107 M 1107 (1158)
Q Consensus 1107 I 1107 (1158)
+
T Consensus 464 ~ 464 (510)
T 2oca_A 464 S 464 (510)
T ss_dssp S
T ss_pred h
Confidence 4
No 13
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.94 E-value=1.6e-25 Score=282.76 Aligned_cols=112 Identities=19% Similarity=0.164 Sum_probs=95.2
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHC------CCeEEEEeCC--------CCHHHHHHHHHHhccCCCeeEEEEeCcccccc
Q 001098 991 PDKVIIFSQFLEHIHVIEQQLTVA------GIKFAGMYSP--------MHSSNKIKSLDMFRHDASCLALLMDGSASLGL 1056 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~------gi~~~~ldG~--------t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GL 1056 (1158)
+.++|||+++..+++.|.+.|... |+++..++|. ++..+|.+++++|+++ .+.|||+|.++++||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g-~~~VLVaT~~~~~GI 478 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTG-KINLLIATTVAEEGL 478 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC----CCSEEECSCCTTS
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcC-CCcEEEEccccccCC
Confidence 799999999999999999999987 9999999999 9999999999999975 578999999999999
Q ss_pred CcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHH
Q 001098 1057 DLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107 (1158)
Q Consensus 1057 NLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~I 1107 (1158)
|++.+++||+||++|||....|++||+.|-| ..++.+...++.+...
T Consensus 479 Dip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~ 525 (699)
T 4gl2_A 479 DIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIER 525 (699)
T ss_dssp CCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHH
T ss_pred ccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHH
Confidence 9999999999999999999999999986655 4455566667654443
No 14
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.94 E-value=3.2e-25 Score=279.99 Aligned_cols=114 Identities=18% Similarity=0.139 Sum_probs=72.4
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCC----CeEEEEeC--------CCCHHHHHHHHHHhccCCCeeEEEEeCcccccc
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVAG----IKFAGMYS--------PMHSSNKIKSLDMFRHDASCLALLMDGSASLGL 1056 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~g----i~~~~ldG--------~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GL 1056 (1158)
.++.++|||+++..+++.|.+.|...| +++..++| +++.++|.+++++|++++.+.|||+|.++++||
T Consensus 396 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~Gi 475 (696)
T 2ykg_A 396 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 475 (696)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC-
T ss_pred CCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCC
Confidence 467899999999999999999999998 89998955 899999999999999845678999999999999
Q ss_pred CcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHH
Q 001098 1057 DLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQ 1106 (1158)
Q Consensus 1057 NLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~ 1106 (1158)
|++.+++||+||++||+....|++|| +|. ++..++.|+..+++++.
T Consensus 476 Dip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 476 DIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp --CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHH
T ss_pred cCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHH
Confidence 99999999999999999999999999 774 67888999999888553
No 15
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.93 E-value=2.2e-25 Score=248.49 Aligned_cols=221 Identities=13% Similarity=0.010 Sum_probs=149.3
Q ss_pred CCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccccCCccccccchh
Q 001098 796 IPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGED 875 (1158)
Q Consensus 796 LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h~~~~~~~~~~~~ 875 (1158)
-|++.|++++++||+.|+++|+.+.......+...-.......+. .......++..||++|+||.++.....
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~-----~~~sl~nli~qLRkicnHP~L~~d~~~--- 91 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDV-----ILESMKTMCLNGSLVATHPYLLIDHYM--- 91 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHH-----HHHHHHHHHHHHHHHHHCGGGTCCTTC---
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccch-----HHHHHHHHHHHHHHHcCChhhhccccC---
Confidence 499999999999999999999999864333332111111111111 112345678999999999976521000
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCccccCCCCCCCCCCCCC
Q 001098 876 IQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVP 955 (1158)
Q Consensus 876 ~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l~~~~~~~~~~~~~ 955 (1158)
+... ......
T Consensus 92 ---------------------------------------------------------------------p~~~-~~~~~~ 101 (328)
T 3hgt_A 92 ---------------------------------------------------------------------PKSL-ITRDVP 101 (328)
T ss_dssp ---------------------------------------------------------------------CSCS-CSTTHH
T ss_pred ---------------------------------------------------------------------Cccc-cccchh
Confidence 0000 000001
Q ss_pred hhhhhhccccccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHH
Q 001098 956 QDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLD 1035 (1158)
Q Consensus 956 ~~lie~~~~~~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~ 1035 (1158)
..++ ..|++..+.+.|+..+ ...++|||||||++.++|+||++|...|+.|.|+||++... +++.
T Consensus 102 ~~l~--------~~SGKf~~L~~LL~~l----~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k~-- 166 (328)
T 3hgt_A 102 AHLA--------ENSGKFSVLRDLINLV----QEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAAA-- 166 (328)
T ss_dssp HHHH--------HTCHHHHHHHHHHHHH----TTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC---------
T ss_pred hHHH--------HcCccHHHHHHHHHHH----HhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhhc--
Confidence 1122 1356666666665543 56789999999999999999999999999999999986543 2221
Q ss_pred HhccCCCeeEEEEeCccccccC-----cccCCEEEEECCCCCcChH-HHHHhccccc--CCCCcEEEEEEEeCCCHHHHH
Q 001098 1036 MFRHDASCLALLMDGSASLGLD-----LSFVTRVFLMEPIWDRSME-EQVISRAHRM--GATRPIHVETLAMRGTVEEQM 1107 (1158)
Q Consensus 1036 ~F~~~~~~~VLL~s~agg~GLN-----Lt~An~VI~~Dp~WNP~~e-~QAigRahRi--GQ~k~V~V~rLi~~~TIEE~I 1107 (1158)
.+..+.++|++.+||.|+| |+.|+.||+||++|||+.+ .||+.|+||+ ||+|+|.||||++.+|||+.+
T Consensus 167 ---~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~ 243 (328)
T 3hgt_A 167 ---NDFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCR 243 (328)
T ss_dssp ----CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHH
T ss_pred ---ccCCceEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHH
Confidence 1345677777888888886 8999999999999999998 9999999999 789999999999999999999
Q ss_pred HHHHH
Q 001098 1108 LEFLQ 1112 (1158)
Q Consensus 1108 l~~l~ 1112 (1158)
+.+-+
T Consensus 244 l~~~~ 248 (328)
T 3hgt_A 244 LFFGK 248 (328)
T ss_dssp HHHHH
T ss_pred HHccC
Confidence 98743
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.92 E-value=2.8e-23 Score=242.97 Aligned_cols=120 Identities=17% Similarity=0.188 Sum_probs=104.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
++.|+|||++.....+.+.+.|...|+.+..++|+++..+|.++++.|+++ ...||++|.++++|+|+..+++||++|+
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 327 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF-QRRILVATNLFGRGMDIERVNIAFNYDM 327 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-CCSEEEESCCCSSCBCCTTEEEEEESSC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC-CCcEEEECChhhcCCCcccCCEEEEeCC
Confidence 567999999999999999999999999999999999999999999999876 5689999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 001098 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQD 1113 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~ 1113 (1158)
+|++....|++||++|.|+...+.+ ++... -|+++++.+++
T Consensus 328 p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~-~~~~~~~~~~~ 368 (391)
T 1xti_A 328 PEDSDTYLHRVARAGRFGTKGLAIT--FVSDE-NDAKILNDVQD 368 (391)
T ss_dssp CSSHHHHHHHHCBCSSSCCCCEEEE--EECSH-HHHHHHHHHHH
T ss_pred CCCHHHHHHhcccccCCCCceEEEE--EEccc-chHHHHHHHHH
Confidence 9999999999999999998766544 45443 24455554443
No 17
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.91 E-value=1.2e-23 Score=260.53 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=94.3
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCCCe--------EEEEeCCCCHHHHHHHHHHhccCC--CeeEEEEeCccccccCc
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVAGIK--------FAGMYSPMHSSNKIKSLDMFRHDA--SCLALLMDGSASLGLDL 1058 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~gi~--------~~~ldG~t~~~~R~~~i~~F~~~~--~~~VLL~s~agg~GLNL 1058 (1158)
.++.|+|||++.....+.+.+.|...+.. +..++|.++ ++|++++++|+++. ...||++|+++++|+|+
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 45689999999999999999999876543 678899875 46999999999864 34466677999999999
Q ss_pred ccCCEEEEECCCCCcChHHHHHhcccccCC---CCcEEEEEEE
Q 001098 1059 SFVTRVFLMEPIWDRSMEEQVISRAHRMGA---TRPIHVETLA 1098 (1158)
Q Consensus 1059 t~An~VI~~Dp~WNP~~e~QAigRahRiGQ---~k~V~V~rLi 1098 (1158)
..+++||+++++|++....|++||++|.|+ +..+.|+.++
T Consensus 516 p~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 516 PTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp TTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred hheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 999999999999999999999999999995 5578888776
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.91 E-value=3.3e-23 Score=239.64 Aligned_cols=111 Identities=15% Similarity=0.153 Sum_probs=101.6
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEEC
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLME 1068 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~D 1068 (1158)
..+.++|||++....++.+.+.|...|+.+..++|+++..+|.++++.|+++ ...||++|.+++.|+|+..+++||+++
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 314 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK-KIRILIATDVMSRGIDVNDLNCVINYH 314 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT-SSSEEEECTTHHHHCCCSCCSEEEESS
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcC-CCeEEEECChhhcCCCcccCCEEEEec
Confidence 3567999999999999999999999999999999999999999999999976 578999999999999999999999999
Q ss_pred CCCCcChHHHHHhcccccCCCCcEEEEEEEeCCC
Q 001098 1069 PIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102 (1158)
Q Consensus 1069 p~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~T 1102 (1158)
++||+....|++||++|.|+...+.+ ++.+..
T Consensus 315 ~~~s~~~~~Q~~GR~~R~g~~g~~~~--~~~~~~ 346 (367)
T 1hv8_A 315 LPQNPESYMHRIGRTGRAGKKGKAIS--IINRRE 346 (367)
T ss_dssp CCSCHHHHHHHSTTTCCSSSCCEEEE--EECTTS
T ss_pred CCCCHHHhhhcccccccCCCccEEEE--EEcHHH
Confidence 99999999999999999998775544 566653
No 19
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.90 E-value=1.4e-23 Score=239.95 Aligned_cols=118 Identities=20% Similarity=0.231 Sum_probs=101.2
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEEC
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLME 1068 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~D 1068 (1158)
..+.++|||++.....+.+.+.|. ....++|+++..+|.+++++|+++ ...||++|.++++|+|+..+++||+++
T Consensus 218 ~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 292 (337)
T 2z0m_A 218 NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREG-EYDMLITTDVASRGLDIPLVEKVINFD 292 (337)
T ss_dssp CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTT-SCSEEEECHHHHTTCCCCCBSEEEESS
T ss_pred CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcC-CCcEEEEcCccccCCCccCCCEEEEec
Confidence 356799999999999999988887 578899999999999999999876 578999999999999999999999999
Q ss_pred CCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 001098 1069 PIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQ 1112 (1158)
Q Consensus 1069 p~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~ 1112 (1158)
++|++....|++||++|.||...+.+|.. .+.+++++|.+.+.
T Consensus 293 ~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 293 APQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp CCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred CCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999999999888888765 44455655554443
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.90 E-value=4.4e-22 Score=234.78 Aligned_cols=109 Identities=16% Similarity=0.221 Sum_probs=100.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCC
Q 001098 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPI 1070 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~ 1070 (1158)
..|+|||++.....+.+.+.|...|+.+..++|+++..+|.++++.|+++ ...||++|.+++.|+|+..+++||++|++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p 354 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG-ASRVLISTDVWARGLDVPQVSLIINYDLP 354 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT-SSCEEEECGGGSSSCCCTTEEEEEESSCC
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCC-CCCEEEECChhhCcCCcccCCEEEEECCC
Confidence 35999999999999999999999999999999999999999999999976 46899999999999999999999999999
Q ss_pred CCcChHHHHHhcccccCCCCcEEEEEEEeCCC
Q 001098 1071 WDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102 (1158)
Q Consensus 1071 WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~T 1102 (1158)
|++....|++||++|.|++. .++.|+..+.
T Consensus 355 ~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~ 384 (410)
T 2j0s_A 355 NNRELYIHRIGRSGRYGRKG--VAINFVKNDD 384 (410)
T ss_dssp SSHHHHHHHHTTSSGGGCCE--EEEEEEEGGG
T ss_pred CCHHHHHHhcccccCCCCce--EEEEEecHHH
Confidence 99999999999999999765 4555677653
No 21
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.89 E-value=8.4e-22 Score=231.45 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=100.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
++.|+|||++....++.+.+.|...|+.+..++|+++..+|..+++.|+++ ...||++|.+++.|+|+..+++||++|+
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLv~T~~~~~Gidip~~~~Vi~~~~ 335 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG-KVRTLVCSDLLTRGIDIQAVNVVINFDF 335 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT-SSSEEEESSCSSSSCCCTTEEEEEESSC
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcC-CCcEEEEcCccccCCCccCCCEEEEeCC
Confidence 456999999999999999999999999999999999999999999999866 5789999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001098 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
+||+....|++||++|.||.. .++.|+..+
T Consensus 336 p~s~~~~~Qr~GR~gR~g~~g--~~~~l~~~~ 365 (400)
T 1s2m_A 336 PKTAETYLHRIGRSGRFGHLG--LAINLINWN 365 (400)
T ss_dssp CSSHHHHHHHHCBSSCTTCCE--EEEEEECGG
T ss_pred CCCHHHHHHhcchhcCCCCCc--eEEEEeccc
Confidence 999999999999999999765 455567766
No 22
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.89 E-value=2.2e-21 Score=226.65 Aligned_cols=118 Identities=17% Similarity=0.189 Sum_probs=102.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
++.++|||++.....+.+.+.|...|+.+..++|+++..+|.++++.|+++ .+.||++|.++++|+|+..+++||++|+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 320 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG-RSKVLITTNVLARGIDIPTVSMVVNYDL 320 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT-SCCEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCC-CCCEEEECChhhcCCCcccCCEEEEcCC
Confidence 457999999999999999999999999999999999999999999999876 5789999999999999999999999999
Q ss_pred CC------CcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 001098 1070 IW------DRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFL 1111 (1158)
Q Consensus 1070 ~W------NP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l 1111 (1158)
+| ++....|++||++|.|+...+.+ ++..+ -+..+++.+
T Consensus 321 p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~--~~~~~-~~~~~~~~i 365 (395)
T 3pey_A 321 PTLANGQADPATYIHRIGRTGRFGRKGVAIS--FVHDK-NSFNILSAI 365 (395)
T ss_dssp CBCTTSSBCHHHHHHHHTTSSCTTCCEEEEE--EECSH-HHHHHHHHH
T ss_pred CCCCcCCCCHHHhhHhccccccCCCCceEEE--EEech-HHHHHHHHH
Confidence 99 99999999999999997654443 45443 233444433
No 23
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.87 E-value=6.9e-22 Score=233.01 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=87.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
++.|+|||++.....+.+.+.|...|+.+..++|+++..+|.++++.|+++ ...||++|.+++.|+|+..+++||++|+
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~~~Gidip~v~~Vi~~~~ 357 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSG-SSRVLITTDLLARGIDVQQVSLVINYDL 357 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC----CEEECSSCC--CCGGGCSCEEESSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcC-CCcEEEECCccccCCCccCCCEEEEeCC
Confidence 456999999999999999999999999999999999999999999999876 4689999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001098 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
+||+....|++||++|.|+... ++.|+.++
T Consensus 358 p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 387 (414)
T 3eiq_A 358 PTNRENYIHRIGRGGRFGRKGV--AINMVTEE 387 (414)
T ss_dssp CSSTHHHHHHSCCC-------C--EEEEECST
T ss_pred CCCHHHhhhhcCcccCCCCCce--EEEEEcHH
Confidence 9999999999999999998764 45567766
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.87 E-value=1.4e-22 Score=237.13 Aligned_cols=109 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
++.|+|||++....++.+.+.|...|+.+..++|+++..+|.++++.|+++ ...||++|.+++.|+|+..+++||++|+
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~T~~~~~Gldi~~~~~Vi~~~~ 336 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRILISTDLLARGIDVQQVSLVINYDL 336 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCC-CCcEEEECChhhcCCCcccCCEEEEeCC
Confidence 456999999999999999999999999999999999999999999999865 5789999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001098 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
+|++....|++||++|.||...+.+ ++..+
T Consensus 337 p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~ 366 (394)
T 1fuu_A 337 PANKENYIHRIGRGGRFGRKGVAIN--FVTNE 366 (394)
T ss_dssp --------------------------------
T ss_pred CCCHHHHHHHcCcccCCCCCceEEE--EEchh
Confidence 9999999999999999998765544 45555
No 25
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.86 E-value=1.5e-20 Score=223.87 Aligned_cols=106 Identities=17% Similarity=0.162 Sum_probs=97.7
Q ss_pred eEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCCC
Q 001098 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWD 1072 (1158)
Q Consensus 993 KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~WN 1072 (1158)
++|||++.....+.+.+.|...|+.+..++|+++..+|.+++++|+++ .+.||++|.+++.|||+..+++||+||++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g-~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~ 380 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG-SMKVLIATSVASRGLDIKNIKHVINYDMPSK 380 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS-SCSEEEECGGGTSSCCCTTCCEEEESSCCSS
T ss_pred CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcC-CCcEEEEchhhhCCCCcccCCEEEEECCCCC
Confidence 599999999999999999999999999999999999999999999876 5789999999999999999999999999999
Q ss_pred cChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001098 1073 RSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1073 P~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
+....|++||++|.|+...+ +.|+..+
T Consensus 381 ~~~y~qriGR~gR~g~~G~a--~~~~~~~ 407 (434)
T 2db3_A 381 IDDYVHRIGRTGRVGNNGRA--TSFFDPE 407 (434)
T ss_dssp HHHHHHHHTTSSCTTCCEEE--EEEECTT
T ss_pred HHHHHHHhcccccCCCCCEE--EEEEecc
Confidence 99999999999999986544 4456643
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=222.05 Aligned_cols=109 Identities=18% Similarity=0.196 Sum_probs=98.2
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
.+.++|||++.....+.+.+.|...|+.+..++|+++.++|.+++++|+++ ...||++|.+++.|+|+..+++||++|+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlvaT~~~~~Gidip~v~~Vi~~~~ 353 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG-KSPILVATAVAARGLDISNVKHVINFDL 353 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHT-SSCEEEECHHHHTTSCCCCEEEEEESSC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcC-CCCEEEECChhhcCCCcccCCEEEEEcC
Confidence 567999999999999999999999999999999999999999999999876 5689999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001098 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
+|++....|++||++|.|+.. .++.|+.+.
T Consensus 354 p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 383 (417)
T 2i4i_A 354 PSDIEEYVHRIGRTGRVGNLG--LATSFFNER 383 (417)
T ss_dssp CSSHHHHHHHHTTBCC--CCE--EEEEEECGG
T ss_pred CCCHHHHHHhcCccccCCCCc--eEEEEEccc
Confidence 999999999999999999764 455566654
No 27
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.85 E-value=1.3e-19 Score=213.22 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=103.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
.+.++|||++.....+.+.+.|...|+.+..++|.++..+|.++++.|+++ .+.||++|.+++.|+|+..+++||++|+
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 343 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG-KEKVLVTTNVCARGIDVEQVSVVINFDL 343 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT-SCSEEEECGGGTSSCCCTTEEEEEESSC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCC-CCcEEEEcCccccCCCccCCCEEEEECC
Confidence 346999999999999999999999999999999999999999999999976 5789999999999999999999999999
Q ss_pred CCCcC------hHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHHh
Q 001098 1070 IWDRS------MEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDT 1114 (1158)
Q Consensus 1070 ~WNP~------~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K 1114 (1158)
+|++. ...|++||++|.|+... ++.++.. .-|..+++.++++
T Consensus 344 p~~~~~~~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~-~~~~~~~~~i~~~ 391 (412)
T 3fht_A 344 PVDKDGNPDNETYLHRIGRTGRFGKRGL--AVNMVDS-KHSMNILNRIQEH 391 (412)
T ss_dssp CBCSSSSBCHHHHHHHHTTSSCTTCCEE--EEEEECS-HHHHHHHHHHHHH
T ss_pred CCCCCCCcchheeecccCcccCCCCCce--EEEEEcC-hhhHHHHHHHHHH
Confidence 99874 88999999999997654 4444543 3345555555444
No 28
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.83 E-value=1.4e-19 Score=220.25 Aligned_cols=104 Identities=15% Similarity=0.138 Sum_probs=97.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
++.++|||+......+.+.+.|...|+.+..++|+++.++|.++++.|.++ .+.||++|.+.|.|+|+..+++||++++
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~vlVaT~a~~~GiD~p~v~~VI~~~~ 313 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRD-DLQIVVATVAFGMGINKPNVRFVVHFDI 313 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEECTTSCTTTCCTTCCEEEESSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC-CCeEEEEechhhCCCCccCccEEEEECC
Confidence 567999999999999999999999999999999999999999999999977 4789999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEE
Q 001098 1070 IWDRSMEEQVISRAHRMGATRPIHV 1094 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V 1094 (1158)
++++....|++||++|.|+...+.+
T Consensus 314 p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 314 PRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp CSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred CCCHHHHHHHhccccCCCCCceEEE
Confidence 9999999999999999998765544
No 29
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.80 E-value=5.1e-19 Score=217.76 Aligned_cols=105 Identities=13% Similarity=0.037 Sum_probs=98.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
++.++|||+......+.+.+.|...|+....++|+++..+|..++++|.++ .+.||++|.+.|.|||+..+++||++++
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g-~~~VlVAT~a~~~GID~p~V~~VI~~~~ 344 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSAN-EIQVVVATVAFGMGIDKPDVRFVIHHSM 344 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SSSEEEECTTSCTTCCCSCEEEEEESSC
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC-CCeEEEEechhhcCCCcccccEEEEeCC
Confidence 568999999999999999999999999999999999999999999999876 5789999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEE
Q 001098 1070 IWDRSMEEQVISRAHRMGATRPIHVE 1095 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~ 1095 (1158)
++++....|++||++|.|+...+.++
T Consensus 345 p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 345 SKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp CSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred CCCHHHHHHHhccCCcCCCCceEEEE
Confidence 99999999999999999987655543
No 30
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.79 E-value=1.1e-18 Score=229.20 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=97.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHC--CCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEE
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVA--GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLM 1067 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~--gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~ 1067 (1158)
.+.+++||++....++.+.+.|... ++.+..++|.++..+|.+++++|+++ .+.||++|.+++.|+|+..+++||++
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g-~~~VLVaT~v~e~GiDip~v~~VIi~ 889 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFNVLVCTTIIETGIDIPTANTIIIE 889 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTT-SCCEEEESSTTGGGSCCTTEEEEEET
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcC-CCcEEEECCcceeeecccCCcEEEEe
Confidence 4679999999999999999999987 89999999999999999999999865 57899999999999999999999999
Q ss_pred CC-CCCcChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001098 1068 EP-IWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1068 Dp-~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
++ .|+++...|++||++|.|+.. ++|.++..+
T Consensus 890 ~~~~~~l~~l~Qr~GRvgR~g~~g--~~~ll~~~~ 922 (1151)
T 2eyq_A 890 RADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPHP 922 (1151)
T ss_dssp TTTSSCHHHHHHHHTTCCBTTBCE--EEEEEECCG
T ss_pred CCCCCCHHHHHHHHhccCcCCCce--EEEEEECCc
Confidence 98 699999999999999999654 455555543
No 31
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=5.9e-18 Score=208.98 Aligned_cols=120 Identities=16% Similarity=0.189 Sum_probs=104.6
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHC---CCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEE
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVA---GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVF 1065 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~---gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI 1065 (1158)
.++.++|||+......+.+.+.|... |+.+..++|.++..+|..++++|+++ .+.||++|.+++.|||+..+++||
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g-~~~vLVaT~~~~~GiDip~v~~VI 364 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD-ESGILVCTDVGARGMDFPNVHEVL 364 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC-SSEEEEECGGGTSSCCCTTCCEEE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcC-CCeEEEEcchhhcCCCcccCCEEE
Confidence 45689999999999999999999987 99999999999999999999999876 578999999999999999999999
Q ss_pred EECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 001098 1066 LMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQD 1113 (1158)
Q Consensus 1066 ~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~ 1113 (1158)
++|+++++....|++||++|.|+... ++.|+... |..+++.+++
T Consensus 365 ~~~~p~s~~~y~Qr~GRagR~g~~g~--~i~~~~~~--e~~~~~~l~~ 408 (579)
T 3sqw_A 365 QIGVPSELANYIHRIGRTARSGKEGS--SVLFICKD--ELPFVRELED 408 (579)
T ss_dssp EESCCSSTTHHHHHHTTSSCTTCCEE--EEEEEEGG--GHHHHHHHHH
T ss_pred EcCCCCCHHHhhhhccccccCCCCce--EEEEEccc--HHHHHHHHHH
Confidence 99999999999999999999997554 44456654 4455544443
No 32
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.78 E-value=1.2e-17 Score=205.59 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=104.1
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHC---CCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEE
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVA---GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVF 1065 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~---gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI 1065 (1158)
.++.++|||+......+.+.+.|... |+.+..++|.++..+|..+++.|+++ .+.||++|.+++.|||+..+++||
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~vLvaT~~~~~GiDip~v~~VI 415 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD-ESGILVCTDVGARGMDFPNVHEVL 415 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC-SSEEEEECGGGTSSCCCTTCCEEE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcC-CCCEEEEcchhhcCCCcccCCEEE
Confidence 45689999999999999999999987 99999999999999999999999876 578999999999999999999999
Q ss_pred EECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 001098 1066 LMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQ 1112 (1158)
Q Consensus 1066 ~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~ 1112 (1158)
++|+++++....|++||+.|.|+.. .++.++..+ |...++.+.
T Consensus 416 ~~~~p~s~~~y~Qr~GRagR~g~~g--~~i~~~~~~--e~~~~~~l~ 458 (563)
T 3i5x_A 416 QIGVPSELANYIHRIGRTARSGKEG--SSVLFICKD--ELPFVRELE 458 (563)
T ss_dssp EESCCSSTTHHHHHHTTSSCTTCCE--EEEEEEEGG--GHHHHHHHH
T ss_pred EECCCCchhhhhhhcCccccCCCCc--eEEEEEchh--HHHHHHHHH
Confidence 9999999999999999999999654 444556655 444444444
No 33
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.77 E-value=5.8e-19 Score=214.45 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=78.2
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
.+.|+|||++.....+.+...|...|+.+..++|+++..+|..+++.|+++ ...||++|.+++.|+|+..+++||++|+
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g-~~~VLVaT~~l~~GiDip~v~~VI~~~~ 434 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVG-TSKVLVTTNVIARGIDVSQVNLVVNYDM 434 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSS-SCCCCEECC-----CCCTTCCEEEC---
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCC-CCeEEEeCChhhcCCCccCCCEEEEECC
Confidence 457999999999999999999999999999999999999999999999866 5689999999999999999999999999
Q ss_pred C------CCcChHHHHHhcccccCCCCcEEEEEEEeC
Q 001098 1070 I------WDRSMEEQVISRAHRMGATRPIHVETLAMR 1100 (1158)
Q Consensus 1070 ~------WNP~~e~QAigRahRiGQ~k~V~V~rLi~~ 1100 (1158)
+ +++....|++||++|.|+...+.+ |+..
T Consensus 435 p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~--l~~~ 469 (508)
T 3fho_A 435 PLDQAGRPDPQTYLHRIGRTGRFGRVGVSIN--FVHD 469 (508)
T ss_dssp -CC-----CTHHHHHTTSCCC-----CEEEE--EECT
T ss_pred CCcccCCCCHHHHHHHhhhcCCCCCCcEEEE--EEeC
Confidence 9 678899999999999997765555 4553
No 34
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.77 E-value=1.8e-17 Score=195.89 Aligned_cols=113 Identities=19% Similarity=0.123 Sum_probs=96.4
Q ss_pred CeEEEEeccHHHHHHHHHHHHHCCCeEE-EEeCCCCHHHHHHHHHHhccCCCeeEEEE----eCccccccCccc-CCEEE
Q 001098 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFA-GMYSPMHSSNKIKSLDMFRHDASCLALLM----DGSASLGLDLSF-VTRVF 1065 (1158)
Q Consensus 992 ~KVLVFSqf~~~ld~L~~~L~~~gi~~~-~ldG~t~~~~R~~~i~~F~~~~~~~VLL~----s~agg~GLNLt~-An~VI 1065 (1158)
.++|||++.....+.+.+.|...|+... .++|. +|. ++.|+++ .+.||++ |.+++.|+|+.. +++||
T Consensus 253 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g-~~~vLvat~s~T~~~~~GiDip~~v~~VI 325 (414)
T 3oiy_A 253 DGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVG-KINILIGVQAYYGKLTRGVDLPERIKYVI 325 (414)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTT-SCSEEEEECCTTCCCCCCCCCTTTCCEEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCC-CCeEEEEecCcCchhhccCccccccCEEE
Confidence 7999999999999999999999999998 88873 444 9999976 5789999 999999999999 99999
Q ss_pred EECCC--CCcChHHHHHhcccccCCC--CcEEEEEEEeCCCHHHHHHHHHHHhH
Q 001098 1066 LMEPI--WDRSMEEQVISRAHRMGAT--RPIHVETLAMRGTVEEQMLEFLQDTD 1115 (1158)
Q Consensus 1066 ~~Dp~--WNP~~e~QAigRahRiGQ~--k~V~V~rLi~~~TIEE~Il~~l~~K~ 1115 (1158)
++|++ +++....|++||++|.|+. +.-.++.|+ + |..+++.++++.
T Consensus 326 ~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~--~~~~~~~l~~~~ 375 (414)
T 3oiy_A 326 FWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--E--DEEIFESLKTRL 375 (414)
T ss_dssp EESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--C--CHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--c--cHHHHHHHHHHh
Confidence 99999 9999999999999999986 566666666 2 445555555443
No 35
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.74 E-value=6.2e-18 Score=203.88 Aligned_cols=108 Identities=17% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
.+.++|||++.....+.+.+.|...|+.+..++|.++..+|..+++.|+++ .+.|||+|.+++.|||+..+++||++|+
T Consensus 332 ~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g-~~~iLv~T~~~~~GlDip~v~~VI~~d~ 410 (479)
T 3fmp_B 332 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG-KEKVLVTTNVCARGIDVEQVSVVINFDL 410 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcC-CCcEEEEccccccCCccccCCEEEEecC
Confidence 446899999999999999999999999999999999999999999999876 5789999999999999999999999999
Q ss_pred CCCc------ChHHHHHhcccccCCCCcEEEEEEEeC
Q 001098 1070 IWDR------SMEEQVISRAHRMGATRPIHVETLAMR 1100 (1158)
Q Consensus 1070 ~WNP------~~e~QAigRahRiGQ~k~V~V~rLi~~ 1100 (1158)
+|++ ....|++||++|.|+...+.+ |+..
T Consensus 411 p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~--~~~~ 445 (479)
T 3fmp_B 411 PVDKDGNPDNETYLHRIGRTGRFGKRGLAVN--MVDS 445 (479)
T ss_dssp -------------------------------------
T ss_pred CCCCccCCCHHHHHHHhcccccCCCCceEEE--EEcC
Confidence 9876 588999999999997665444 4443
No 36
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.3e-16 Score=206.67 Aligned_cols=120 Identities=17% Similarity=0.059 Sum_probs=101.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCe---------------------------------------EEEEeCCCCHHHH
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIK---------------------------------------FAGMYSPMHSSNK 1030 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~---------------------------------------~~~ldG~t~~~~R 1030 (1158)
...++|||+......+.+...|...|+. +..++|+++..+|
T Consensus 342 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR 421 (1010)
T 2xgj_A 342 KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILK 421 (1010)
T ss_dssp TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHH
Confidence 3457888888888877777777654432 6789999999999
Q ss_pred HHHHHHhccCCCeeEEEEeCccccccCcccCCEEEE----ECC----CCCcChHHHHHhcccccCCCCcEEEEEEEeCCC
Q 001098 1031 IKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFL----MEP----IWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102 (1158)
Q Consensus 1031 ~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~----~Dp----~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~T 1102 (1158)
..+++.|+++ .++||++|.+++.|+|+.+.+.||. ||. +|++....|++||++|.|+....+++.++..+.
T Consensus 422 ~~ve~~F~~G-~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 422 EVIEILFQEG-FLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 500 (1010)
T ss_dssp HHHHHHHHTT-CCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCC
T ss_pred HHHHHHHhcC-CCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCC
Confidence 9999999875 6899999999999999999999999 999 899999999999999999998899999998764
Q ss_pred HHHHHHHH
Q 001098 1103 VEEQMLEF 1110 (1158)
Q Consensus 1103 IEE~Il~~ 1110 (1158)
-++.+.++
T Consensus 501 e~~~~~~l 508 (1010)
T 2xgj_A 501 EPQVAKGM 508 (1010)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 34444333
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.71 E-value=1.1e-17 Score=210.63 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=75.4
Q ss_pred HHHHHHHHHH---CCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCC-CCcChHHHH
Q 001098 1004 IHVIEQQLTV---AGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPI-WDRSMEEQV 1079 (1158)
Q Consensus 1004 ld~L~~~L~~---~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~-WNP~~e~QA 1079 (1158)
.+.+.+.|.. .++.+..++|+++.++|.+++++|+++ .+.||++|.+.+.|+|+..+++||++|++ |+.+...|+
T Consensus 599 a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G-~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr 677 (780)
T 1gm5_A 599 AVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEG-RYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQL 677 (780)
T ss_dssp HHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTT-SSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHH
T ss_pred HHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCC-CCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHH
Confidence 4455555655 367888999999999999999999976 57899999999999999999999999998 478889999
Q ss_pred HhcccccCCCCcEEE
Q 001098 1080 ISRAHRMGATRPIHV 1094 (1158)
Q Consensus 1080 igRahRiGQ~k~V~V 1094 (1158)
+||++|.|+...+.+
T Consensus 678 ~GRaGR~g~~g~~il 692 (780)
T 1gm5_A 678 RGRVGRGGQEAYCFL 692 (780)
T ss_dssp HHTSCCSSTTCEEEC
T ss_pred hcccCcCCCCCEEEE
Confidence 999999998765544
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.2e-15 Score=199.61 Aligned_cols=123 Identities=18% Similarity=0.112 Sum_probs=102.6
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCCCe---------------------------------------EEEEeCCCCHHH
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVAGIK---------------------------------------FAGMYSPMHSSN 1029 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~gi~---------------------------------------~~~ldG~t~~~~ 1029 (1158)
..+.++|||+......+.+...|...|+. +..++|+++..+
T Consensus 439 ~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~ 518 (1108)
T 3l9o_A 439 KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPIL 518 (1108)
T ss_dssp TTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHH
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHH
Confidence 35679999999999988888887553332 688999999999
Q ss_pred HHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCCCcCh--------HHHHHhcccccCCCCcEEEEEEEeCC
Q 001098 1030 KIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSM--------EEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1030 R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~--------e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
|..+++.|+++ .+.||++|.+++.|||+.+.++||.++.+|++.. ..|++||++|.|+...-++|.++..+
T Consensus 519 R~~v~~~F~~G-~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 519 KEVIEILFQEG-FLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp HHHHHHHHHHT-CCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred HHHHHHHHhCC-CCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99999999976 5799999999999999999999999998888775 88999999999999999999999887
Q ss_pred CHHHHHHHHHH
Q 001098 1102 TVEEQMLEFLQ 1112 (1158)
Q Consensus 1102 TIEE~Il~~l~ 1112 (1158)
..+..+-+++.
T Consensus 598 ~~~~~~~~l~~ 608 (1108)
T 3l9o_A 598 MEPQVAKGMVK 608 (1108)
T ss_dssp CCHHHHHHHHH
T ss_pred cCHHHHHHHhc
Confidence 65555544444
No 39
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.67 E-value=4e-15 Score=188.25 Aligned_cols=112 Identities=12% Similarity=0.016 Sum_probs=93.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCC------------------------------------CeEEEEeCCCCHHHHHHH
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAG------------------------------------IKFAGMYSPMHSSNKIKS 1033 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~g------------------------------------i~~~~ldG~t~~~~R~~~ 1033 (1158)
++.++|||+......+.+...|.... ..+..++|+++.++|..+
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 45788888888888888877776531 247889999999999999
Q ss_pred HHHhccCCCeeEEEEeCccccccCcccCCEEEE----EC-------CCCCcChHHHHHhcccccCCCCcEEEEEEEeCCC
Q 001098 1034 LDMFRHDASCLALLMDGSASLGLDLSFVTRVFL----ME-------PIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102 (1158)
Q Consensus 1034 i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~----~D-------p~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~T 1102 (1158)
.+.|.++ .++|+++|.+++.|+|+.+.++||. || .+++++...|++||++|.|+.++-.+|+++....
T Consensus 331 ~~~f~~g-~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 331 EEGFRQR-KIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHHTT-CSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHHHcC-CCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 9999876 6899999999999999999999998 89 7899999999999999999999999999987765
No 40
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.67 E-value=4.1e-15 Score=188.29 Aligned_cols=115 Identities=12% Similarity=0.050 Sum_probs=97.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHC---------------------------------CCeEEEEeCCCCHHHHHHHHHH
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVA---------------------------------GIKFAGMYSPMHSSNKIKSLDM 1036 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~---------------------------------gi~~~~ldG~t~~~~R~~~i~~ 1036 (1158)
++.++|||+......+.+...|... ...+..++|+++.++|..+.+.
T Consensus 236 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 315 (720)
T 2zj8_A 236 KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEEN 315 (720)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 4567777877777777766666542 1247889999999999999999
Q ss_pred hccCCCeeEEEEeCccccccCcccCCEEEE----EC----CCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHH
Q 001098 1037 FRHDASCLALLMDGSASLGLDLSFVTRVFL----ME----PIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEE 1105 (1158)
Q Consensus 1037 F~~~~~~~VLL~s~agg~GLNLt~An~VI~----~D----p~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE 1105 (1158)
|.++ .++||++|.+++.|+|+.+.++||. || .+++++...|++||++|.|+.++-.+|.++.....+.
T Consensus 316 f~~g-~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 316 FRKG-IIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp HHTT-SSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred HHCC-CCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHH
Confidence 9876 6799999999999999999999988 77 5788999999999999999999989999999888654
No 41
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.66 E-value=5.2e-15 Score=186.74 Aligned_cols=88 Identities=15% Similarity=0.076 Sum_probs=79.3
Q ss_pred eEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEE----EC---CCCCcChHHHHHhcccccCCC
Q 001098 1017 KFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFL----ME---PIWDRSMEEQVISRAHRMGAT 1089 (1158)
Q Consensus 1017 ~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~----~D---p~WNP~~e~QAigRahRiGQ~ 1089 (1158)
.+..++|+++.++|..+.+.|.++ .++||++|.+++.|+|+.+.++||. || .+++++...|++||++|.|+.
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g-~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~ 376 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRG-NIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMD 376 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTT-SCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTC
T ss_pred CeEEecCCCCHHHHHHHHHHHHCC-CCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCC
Confidence 355689999999999999999976 6899999999999999999999998 76 688999999999999999999
Q ss_pred CcEEEEEEEeCCCHHH
Q 001098 1090 RPIHVETLAMRGTVEE 1105 (1158)
Q Consensus 1090 k~V~V~rLi~~~TIEE 1105 (1158)
++-.+|.++.....+.
T Consensus 377 ~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 377 ERGEAIIIVGKRDREI 392 (702)
T ss_dssp SCEEEEEECCGGGHHH
T ss_pred CCceEEEEecCccHHH
Confidence 9999999998887554
No 42
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.60 E-value=1.1e-14 Score=188.74 Aligned_cols=119 Identities=14% Similarity=0.041 Sum_probs=101.2
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCCC---------------------------------------eEEEEeCCCCHHH
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVAGI---------------------------------------KFAGMYSPMHSSN 1029 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~gi---------------------------------------~~~~ldG~t~~~~ 1029 (1158)
....++|||+......+.+...|...|+ .+..++|+++..+
T Consensus 334 ~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~ 413 (997)
T 4a4z_A 334 RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIV 413 (997)
T ss_dssp TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHH
T ss_pred CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHH
Confidence 3567999999999999999988877665 4688999999999
Q ss_pred HHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCC---------CcChHHHHHhcccccCCCCcEEEEEEEeC
Q 001098 1030 KIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIW---------DRSMEEQVISRAHRMGATRPIHVETLAMR 1100 (1158)
Q Consensus 1030 R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~W---------NP~~e~QAigRahRiGQ~k~V~V~rLi~~ 1100 (1158)
|..+++.|+++ .++||++|.+.+.|||+.. .+||+++.+. ++....|++||++|.|+...-+++.++..
T Consensus 414 R~~v~~~F~~G-~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~ 491 (997)
T 4a4z_A 414 KELIEILFSKG-FIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYN 491 (997)
T ss_dssp HHHHHHHHHTT-CCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCS
T ss_pred HHHHHHHHHCC-CCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCC
Confidence 99999999976 5799999999999999999 6677655544 88899999999999999999999888866
Q ss_pred CCHHHHHHH
Q 001098 1101 GTVEEQMLE 1109 (1158)
Q Consensus 1101 ~TIEE~Il~ 1109 (1158)
+..++.+++
T Consensus 492 ~~~~~~~~~ 500 (997)
T 4a4z_A 492 SPLSIATFK 500 (997)
T ss_dssp SCCCHHHHH
T ss_pred CcchHHHHH
Confidence 655555544
No 43
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.58 E-value=7e-14 Score=180.46 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=101.0
Q ss_pred cchhhHHhhhHHHHhh---ccccccc-ccCCCcEEeecccCCcccchHHHHHHHHh--c-----CCEEEEEC-cccHHHH
Q 001098 561 FHKIFQAFGLIRRVEK---GITRWYY-PKTLDNLAFDLAALRLALCEPLDSVRLYL--S-----RATLIVVP-SYLVDHW 628 (1158)
Q Consensus 561 ~~~~~Q~~Gl~~~~e~---~~~~~l~-~~~~ggILaDelad~mGLGKTlqaiall~--s-----~~tLIVvP-~sLl~qW 628 (1158)
.+++||..++-..++. +..+..| ..+.+|++.. .+|.|||++++.++. . .++||||| ..|..||
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~----~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~ 346 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWH----TTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQT 346 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEE----CTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEe----cCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHH
Confidence 4789999998665542 1110001 1235678877 599999999865532 1 47999999 5689999
Q ss_pred HHHHHhhcCCCCeEEEEecCCCCcccc-cc-cCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHH
Q 001098 629 KTQIQQHVRPGQLHLFVWTDHKKPSAH-SL-AWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLT 706 (1158)
Q Consensus 629 ~~Ei~k~~~~~~l~v~v~~g~~~~~~~-~l-~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t 706 (1158)
.+++.+|.+.. +..+....... .+ ....+|+|+|++.+............. -.+.+||+||||+.....
T Consensus 347 ~~~f~~f~~~~-----v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~-~~~~lvIiDEAHrs~~~~--- 417 (1038)
T 2w00_A 347 MKEYQRFSPDS-----VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVY-NQQVVFIFDECHRSQFGE--- 417 (1038)
T ss_dssp HHHHHTTSTTC-----SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGG-GSCEEEEEESCCTTHHHH---
T ss_pred HHHHHHhcccc-----cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhcc-ccccEEEEEccchhcchH---
Confidence 99999987531 12222222111 12 236899999999998643321111111 268899999999976321
Q ss_pred HHHHHHHHcccCeEEEEeCCCCCCC
Q 001098 707 NKLQMAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 707 ~~~~~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
....+...++...++++||||+...
T Consensus 418 ~~~~I~~~~p~a~~lgfTATP~~~~ 442 (1038)
T 2w00_A 418 AQKNLKKKFKRYYQFGFTGTPIFPE 442 (1038)
T ss_dssp HHHHHHHHCSSEEEEEEESSCCCST
T ss_pred HHHHHHHhCCcccEEEEeCCccccc
Confidence 1122344567778999999999754
No 44
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.57 E-value=9.7e-16 Score=130.72 Aligned_cols=52 Identities=35% Similarity=0.794 Sum_probs=47.2
Q ss_pred CCCCceeecc--chhhhhhcccccccC-CCccceeccCCCccCcCCCCCcccccc
Q 001098 430 ACNETWVQCD--ACHKWRKLLDASVAD-ATAAWFCSMNSDPTHQSCGDPEEAWDN 481 (1158)
Q Consensus 430 ~~~~~wvqc~--~c~kwr~~~~~~~~~-~~~~w~c~~n~~~~~~sC~~pEe~~d~ 481 (1158)
.....||||| .|.|||+||.++++. .++.|||+||+|+.|++|++|||.++.
T Consensus 13 ~~~~~WVQCd~p~C~KWR~LP~~~~~~~lpd~W~C~mN~d~~~~~Cs~pEE~~~~ 67 (69)
T 2e61_A 13 GQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEETWTG 67 (69)
T ss_dssp CCCCCEEECSSTTTCCEEECCSSCCTTTSCTTCCGGGCSCGGGCSSSSCCCCCCC
T ss_pred CCCCeEEEeCccccCcccCCccccccccCCCcCEeCCCCCCccCCCCCCcccCCC
Confidence 3468999999 999999999998854 589999999999999999999999886
No 45
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.56 E-value=1.7e-14 Score=149.51 Aligned_cols=119 Identities=17% Similarity=0.184 Sum_probs=104.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
++.|+|||+++....+.+.+.|...|+.+..++|.++..+|..+++.|+++ .+.||++|.+++.|+|++.+++||++|+
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF-QRRILVATNLFGRGMDIERVNIAFNYDM 108 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEESSCCSTTCCGGGCSEEEESSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC-CCcEEEECCchhcCcchhhCCEEEEECC
Confidence 567999999999999999999999999999999999999999999999966 5789999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 001098 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQ 1112 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~ 1112 (1158)
+||+....|++||++|.||...+. .|+... -|..+++.+.
T Consensus 109 p~~~~~~~qr~GR~~R~g~~g~~~--~~~~~~-~~~~~~~~l~ 148 (172)
T 1t5i_A 109 PEDSDTYLHRVARAGRFGTKGLAI--TFVSDE-NDAKILNDVQ 148 (172)
T ss_dssp CSSHHHHHHHHHHHTGGGCCCEEE--EEECSH-HHHHHHHHHH
T ss_pred CCCHHHHHHHhcccccCCCCcEEE--EEEcCh-hHHHHHHHHH
Confidence 999999999999999999876544 345443 2444444433
No 46
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.55 E-value=6.2e-15 Score=151.28 Aligned_cols=120 Identities=18% Similarity=0.274 Sum_probs=105.8
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEEC
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLME 1068 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~D 1068 (1158)
.++.|+|||+++....+.+.+.|...|+.+..++|+++..+|..++++|+++ .+.||++|.+++.|+|++.+++||++|
T Consensus 33 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~vlv~T~~~~~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 33 ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG-EYRYLVATDVAARGIDIENISLVINYD 111 (163)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEECGGGTTTCCCSCCSEEEESS
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeEEEECChhhcCCchhcCCEEEEeC
Confidence 3567999999999999999999999999999999999999999999999976 578999999999999999999999999
Q ss_pred CCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 001098 1069 PIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQD 1113 (1158)
Q Consensus 1069 p~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~ 1113 (1158)
++||+....|++||++|.||+..+ +.|+... |...++.+++
T Consensus 112 ~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~i~~ 152 (163)
T 2hjv_A 112 LPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLADIEE 152 (163)
T ss_dssp CCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHHHHH
T ss_pred CCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHHHHH
Confidence 999999999999999999987654 4556654 4555554443
No 47
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.55 E-value=5.8e-15 Score=154.86 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=86.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
++.|+|||++.....+.+.+.|...|+.+..++|+++..+|..+++.|+++ .+.||++|.+++.|+|++.+++||++|+
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~Gldi~~~~~VI~~d~ 123 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG-KSPILVATAVAARGLDISNVKHVINFDL 123 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT-SSSEEEEEC------CCCSBSEEEESSC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC-CCeEEEEcChhhcCCCcccCCEEEEeCC
Confidence 678999999999999999999999999999999999999999999999876 5679999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001098 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
+||+....|++||++|.||+.. ++.|+...
T Consensus 124 p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 153 (185)
T 2jgn_A 124 PSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 153 (185)
T ss_dssp CSSHHHHHHHHTTBCCTTSCEE--EEEEECGG
T ss_pred CCCHHHHHHHccccCCCCCCcE--EEEEEchh
Confidence 9999999999999999997654 55566654
No 48
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.54 E-value=2e-14 Score=151.52 Aligned_cols=108 Identities=20% Similarity=0.266 Sum_probs=96.9
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCC
Q 001098 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPI 1070 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~ 1070 (1158)
+.|+|||+++...++.+.+.|...|+.+..++|+++..+|.++++.|+++ .+.||++|.+++.|+|++.+++||+||++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~vLvaT~~~~~Gldi~~v~~VI~~d~p 132 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG-KKDVLVATDVASKGLDFPAIQHVINYDMP 132 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHT-SCSEEEECHHHHTTCCCCCCSEEEESSCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCEEEEEcCchhcCCCcccCCEEEEeCCC
Confidence 46899999999999999999999999999999999999999999999976 57899999999999999999999999999
Q ss_pred CCcChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001098 1071 WDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1071 WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
||+....|++||++|.||+..+ +.|+...
T Consensus 133 ~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 133 EEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp SSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred CCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 9999999999999999997744 4566654
No 49
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=99.52 E-value=3.4e-15 Score=135.84 Aligned_cols=54 Identities=31% Similarity=0.845 Sum_probs=47.8
Q ss_pred cCCCCceeeccchhhhhhccccccc--CCCccceeccCCCccCcCCCCCccccccc
Q 001098 429 FACNETWVQCDACHKWRKLLDASVA--DATAAWFCSMNSDPTHQSCGDPEEAWDNC 482 (1158)
Q Consensus 429 ~~~~~~wvqc~~c~kwr~~~~~~~~--~~~~~w~c~~n~~~~~~sC~~pEe~~d~~ 482 (1158)
...++.|||||.|.|||+||.+... +.++.|||+||+|+.|++|++|||.++..
T Consensus 22 ~~~~~~WVQCD~C~KWRrLP~~~~~~~~~pd~W~C~mN~D~~~nsCs~PEE~~~~e 77 (100)
T 2l7p_A 22 YSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNSDKRFADCSKSQEMSNEE 77 (100)
T ss_dssp CSSSSEEEECTTTCCEEEECHHHHTTSTTSSCCCGGGSSCSSSCSTTSCCSSCHHH
T ss_pred CCCCCeEEeeCCCCccccCChhHccccCCCCCceeCCCCCCCCCCCCCccCCCHHH
Confidence 4558899999999999999988763 45899999999999999999999987765
No 50
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.51 E-value=4.6e-14 Score=144.99 Aligned_cols=111 Identities=16% Similarity=0.217 Sum_probs=97.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
++.|+|||++.....+.+...|...|+.+..++|+++..+|..+++.|+++ .+.||++|.+++.|+|++.+++||++|+
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~~~G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRILISTDLLARGIDVQQVSLVINYDL 107 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEEEGGGTTTCCCCSCSEEEESSC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC-CCEEEEEcChhhcCCCcccCCEEEEeCC
Confidence 568999999999999999999999999999999999999999999999866 5689999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeCCCH
Q 001098 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRGTV 1103 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TI 1103 (1158)
+|++....|++||++|.||... ++.|+..+..
T Consensus 108 p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~~ 139 (165)
T 1fuk_A 108 PANKENYIHRIGRGGRFGRKGV--AINFVTNEDV 139 (165)
T ss_dssp CSSGGGGGGSSCSCC-----CE--EEEEEETTTH
T ss_pred CCCHHHHHHHhcccccCCCCce--EEEEEcchHH
Confidence 9999999999999999997765 4567777754
No 51
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.50 E-value=1e-13 Score=155.24 Aligned_cols=157 Identities=13% Similarity=0.069 Sum_probs=110.4
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHhc------CCEEEEECc-ccHHHHHHHHHh
Q 001098 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLS------RATLIVVPS-YLVDHWKTQIQQ 634 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~s------~~tLIVvP~-sLl~qW~~Ei~k 634 (1158)
+++||..++...+.. .++|+++ .+|.|||++++.++.. +++|||||. .|+.||.+++.+
T Consensus 114 l~~~Q~~ai~~~l~~----------~~~ll~~----~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~ 179 (282)
T 1rif_A 114 PHWYQKDAVFEGLVN----------RRRILNL----PTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVD 179 (282)
T ss_dssp CCHHHHHHHHHHHHH----------SEEEECC----CTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhc----------CCeEEEc----CCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH
Confidence 678999998665543 2356655 6999999999876542 489999996 799999999999
Q ss_pred hcCCCCeEEEEecCCCCcccccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHH
Q 001098 635 HVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS 714 (1158)
Q Consensus 635 ~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~ 714 (1158)
+.......+..+.+...... ......+|+|+||+.+.+. .....-.|++||+||||++.+. .....+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~I~v~T~~~l~~~------~~~~~~~~~~vIiDEaH~~~~~----~~~~il~~ 248 (282)
T 1rif_A 180 YRLFSHAMIKKIGGGASKDD-KYKNDAPVVVGTWQTVVKQ------PKEWFSQFGMMMNDECHLATGK----SISSIISG 248 (282)
T ss_dssp HTSCCGGGEEECSTTCSSTT-CCCTTCSEEEECHHHHTTS------CGGGGGGEEEEEEETGGGCCHH----HHHHHTTT
T ss_pred hcccccceEEEEeCCCcchh-hhccCCcEEEEchHHHHhh------HHHHHhhCCEEEEECCccCCcc----cHHHHHHH
Confidence 97543344544444332211 2234789999999998733 1122347899999999999852 22223344
Q ss_pred c-ccCeEEEEeCCCCCCCccchhhhhHHHhhhcCC
Q 001098 715 L-TASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHE 748 (1158)
Q Consensus 715 L-~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p 748 (1158)
+ .+.++++|||||.. . ..+++.++.+++|
T Consensus 249 ~~~~~~~l~lSATp~~-~----~~~~~~l~~l~g~ 278 (282)
T 1rif_A 249 LNNCMFKFGLSGSLRD-G----KANIMQYVGMFGE 278 (282)
T ss_dssp CTTCCEEEEECSSCCT-T----STTHHHHHHHHCE
T ss_pred hhcCCeEEEEeCCCCC-c----chHHHHHHHhcCC
Confidence 4 57889999999964 4 4678888777765
No 52
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=2.3e-13 Score=141.20 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=95.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
++.|+|||+++....+.+...|...|+.+..++|+++..+|..+++.|+++ .+.||++|.+++.|+|++.+++||+||+
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g-~~~vLvaT~~~~~Gid~~~~~~Vi~~d~ 111 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG-KEKVLITTNVCARGIDVKQVTIVVNFDL 111 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT-SCSEEEECCSCCTTTCCTTEEEEEESSC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeEEEEecchhcCCCcccCCEEEEeCC
Confidence 567999999999999999999999999999999999999999999999976 5789999999999999999999999999
Q ss_pred CCC------cChHHHHHhcccccCCCCcEEEEEEEeCCC
Q 001098 1070 IWD------RSMEEQVISRAHRMGATRPIHVETLAMRGT 1102 (1158)
Q Consensus 1070 ~WN------P~~e~QAigRahRiGQ~k~V~V~rLi~~~T 1102 (1158)
+|| +....|++||++|.|+. -.++.|+..+.
T Consensus 112 p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 112 PVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred CCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 955 56788999999999955 46677787765
No 53
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.20 E-value=4.2e-15 Score=153.60 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=104.4
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEEC
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLME 1068 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~D 1068 (1158)
.++.|+|||+++....+.+.+.|...|+.+..++|+++..+|.++++.|+++ .+.||++|.+++.|+|++.+++||++|
T Consensus 28 ~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~Gid~~~~~~Vi~~~ 106 (170)
T 2yjt_D 28 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG-RVNVLVATDVAARGIDIPDVSHVFNFD 106 (170)
Confidence 4568999999999999999999999999999999999999999999999976 578999999999999999999999999
Q ss_pred CCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 001098 1069 PIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQ 1112 (1158)
Q Consensus 1069 p~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~ 1112 (1158)
++||+....|++||++|.||+..+.+ |+... |..+++.+.
T Consensus 107 ~p~~~~~~~qr~GR~~R~g~~g~~~~--~~~~~--~~~~~~~~~ 146 (170)
T 2yjt_D 107 MPRSGDTYLHRIGRTARAGRKGTAIS--LVEAH--DHLLLGKVG 146 (170)
Confidence 99999999999999999999876644 44443 444444333
No 54
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.45 E-value=3.1e-12 Score=167.37 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=66.7
Q ss_pred CeEEEEeccHHHHHHHHHHHHHCCCeEE-EEeCCCCHHHHHHHHHHhccCCCeeEEEE----eCccccccCccc-CCEEE
Q 001098 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFA-GMYSPMHSSNKIKSLDMFRHDASCLALLM----DGSASLGLDLSF-VTRVF 1065 (1158)
Q Consensus 992 ~KVLVFSqf~~~ld~L~~~L~~~gi~~~-~ldG~t~~~~R~~~i~~F~~~~~~~VLL~----s~agg~GLNLt~-An~VI 1065 (1158)
.++|||++.....+.+...|...|+... .++| +|.+ +++|+++ .+.||++ |.+.+.|||+.. .++||
T Consensus 310 ~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G-~~~VLVatas~TdvlarGIDip~~V~~VI 382 (1104)
T 4ddu_A 310 DGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVG-KINILIGVQAYYGKLTRGVDLPERIKYVI 382 (1104)
T ss_dssp SSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHT-SCSEEEEETTTHHHHCCSCCCTTTCCEEE
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCC-CCCEEEEecCCCCeeEecCcCCCCCCEEE
Confidence 6999999999999999999999999998 8888 3555 9999976 5789999 899999999999 99999
Q ss_pred EECCCC
Q 001098 1066 LMEPIW 1071 (1158)
Q Consensus 1066 ~~Dp~W 1071 (1158)
+||+|-
T Consensus 383 ~~d~P~ 388 (1104)
T 4ddu_A 383 FWGTPS 388 (1104)
T ss_dssp EESCCE
T ss_pred EECCCC
Confidence 999997
No 55
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.43 E-value=6.2e-13 Score=142.45 Aligned_cols=110 Identities=21% Similarity=0.218 Sum_probs=100.0
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEEC
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLME 1068 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~D 1068 (1158)
.++.++|||++.....+.+.+.|...|+.+..++|+++..+|..+++.|+++ .+.||++|.+++.|+|+..+++||++|
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vlvaT~~~~~Gidi~~v~~Vi~~~ 107 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQG-EVRVLVATDVAARGLDIPQVDLVVHYR 107 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSS-SCCEEEECTTTTCSSSCCCBSEEEESS
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCC-CCeEEEecChhhcCCCCccCcEEEECC
Confidence 3578999999999999999999999999999999999999999999999876 578999999999999999999999999
Q ss_pred CCCCcChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001098 1069 PIWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1069 p~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
++|++....|++||++|.|+.. .++.|+...
T Consensus 108 ~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~ 138 (212)
T 3eaq_A 108 LPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 138 (212)
T ss_dssp CCSSHHHHHHHHTTBCCCC--B--EEEEEECGG
T ss_pred CCcCHHHHHHHhcccCCCCCCC--eEEEEEchh
Confidence 9999999999999999999775 455667655
No 56
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.40 E-value=4.1e-12 Score=150.84 Aligned_cols=99 Identities=12% Similarity=0.044 Sum_probs=86.4
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCE-------
Q 001098 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTR------- 1063 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~------- 1063 (1158)
+.++|||+......+.+.+.|...|+++..++|. +|.++++.|.++ .+.||++|.+.+.|+|+. ..+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g-~~~vLVaT~v~e~GiDip-~~~VI~~g~~ 244 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSE-KWDFVITTDISEMGANFK-ADRVIDPRKT 244 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHS-CCSEEEECGGGGTSCCCC-CSEEEECCEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCC-CCeEEEECchHHcCcccC-CcEEEecCcc
Confidence 4589999999999999999999999999999996 588899999876 578999999999999998 544
Q ss_pred ----------EEEECCCCCcChHHHHHhcccccCCCC-cEEEE
Q 001098 1064 ----------VFLMEPIWDRSMEEQVISRAHRMGATR-PIHVE 1095 (1158)
Q Consensus 1064 ----------VI~~Dp~WNP~~e~QAigRahRiGQ~k-~V~V~ 1095 (1158)
||+++.+.+++...|++||+.|.|... .+.+|
T Consensus 245 ~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 245 IKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp EEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred ccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 577888999999999999999999654 44443
No 57
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.38 E-value=9.8e-12 Score=162.59 Aligned_cols=116 Identities=16% Similarity=0.084 Sum_probs=90.5
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEE----eCccccccCcccC-CEEE
Q 001098 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLM----DGSASLGLDLSFV-TRVF 1065 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~----s~agg~GLNLt~A-n~VI 1065 (1158)
+.++|||+......+.+.+.|... ++...++|.+ .+++++|+++ .+.||++ |.+++.|||+..+ ++||
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G-~~~VLVaTas~Tdv~~rGIDip~VI~~VI 347 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEG-EIDHLIGTAHYYGTLVRGLDLPERIRFAV 347 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHT-SCSEEEEECC------CCSCCTTTCCEEE
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcC-CCcEEEEecCCCCeeEeccccCCcccEEE
Confidence 568999999999999999999988 9999999986 4788999876 5689999 8899999999995 9999
Q ss_pred EECCC-----------------------------------------------------------------------CCcC
Q 001098 1066 LMEPI-----------------------------------------------------------------------WDRS 1074 (1158)
Q Consensus 1066 ~~Dp~-----------------------------------------------------------------------WNP~ 1074 (1158)
++|++ .++.
T Consensus 348 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 427 (1054)
T 1gku_B 348 FVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLR 427 (1054)
T ss_dssp EESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHH
T ss_pred EeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHH
Confidence 99999 6778
Q ss_pred hHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHHhH
Q 001098 1075 MEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTD 1115 (1158)
Q Consensus 1075 ~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K~ 1115 (1158)
...|++||+.|.|.......+.++..+ |+.+++.+.++.
T Consensus 428 ~yiQr~GRagR~g~~g~~~g~~~~~~~--d~~~~~~l~~~l 466 (1054)
T 1gku_B 428 TYIQGSGRTSRLFAGGLTKGASFLLED--DSELLSAFIERA 466 (1054)
T ss_dssp HHHHHHHTTCCEETTEECCEEEEEECS--CHHHHHHHHHHH
T ss_pred HHhhhhchhhhccCCCCceEEEEEEec--CHHHHHHHHHHH
Confidence 899999999999877432333345555 455666665554
No 58
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.37 E-value=2.1e-12 Score=140.75 Aligned_cols=135 Identities=19% Similarity=0.170 Sum_probs=100.0
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh--cCCEEEEECc-ccHHHHHHHHHhhcCC
Q 001098 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL--SRATLIVVPS-YLVDHWKTQIQQHVRP 638 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~--s~~tLIVvP~-sLl~qW~~Ei~k~~~~ 638 (1158)
+++||..++...++. ..+|+.+ .+|+|||.+++.++. .+++|||||. .|+.||.+++.+ ++
T Consensus 94 l~~~Q~~ai~~~~~~----------~~~ll~~----~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~-~~- 157 (237)
T 2fz4_A 94 LRDYQEKALERWLVD----------KRGCIVL----PTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGI-FG- 157 (237)
T ss_dssp CCHHHHHHHHHHTTT----------SEEEEEE----SSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGG-GC-
T ss_pred cCHHHHHHHHHHHhC----------CCEEEEe----CCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh-CC-
Confidence 789999988553322 2367766 599999999988765 4799999998 789999999999 43
Q ss_pred CCeE-EEEecCCCCcccccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHccc
Q 001098 639 GQLH-LFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTA 717 (1158)
Q Consensus 639 ~~l~-v~v~~g~~~~~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a 717 (1158)
++ +..+.+.... ..+|+|+||+.+..... ...-.|++||+||+|++.+.. . ...+..+.+
T Consensus 158 --~~~v~~~~g~~~~-------~~~i~v~T~~~l~~~~~------~~~~~~~llIiDEaH~l~~~~--~--~~i~~~~~~ 218 (237)
T 2fz4_A 158 --EEYVGEFSGRIKE-------LKPLTVSTYDSAYVNAE------KLGNRFMLLIFDEVHHLPAES--Y--VQIAQMSIA 218 (237)
T ss_dssp --GGGEEEESSSCBC-------CCSEEEEEHHHHHHTHH------HHTTTCSEEEEECSSCCCTTT--H--HHHHHTCCC
T ss_pred --CCeEEEEeCCCCC-------cCCEEEEeHHHHHhhHH------HhcccCCEEEEECCccCCChH--H--HHHHHhccC
Confidence 55 6677765432 56899999999875432 112358999999999998754 1 224456788
Q ss_pred CeEEEEeCCCCCCC
Q 001098 718 SNRWLLTGTPTPNT 731 (1158)
Q Consensus 718 ~~RwlLTGTPiqN~ 731 (1158)
.++++|||||..++
T Consensus 219 ~~~l~LSATp~r~D 232 (237)
T 2fz4_A 219 PFRLGLTATFERED 232 (237)
T ss_dssp SEEEEEEESCC---
T ss_pred CEEEEEecCCCCCC
Confidence 99999999999987
No 59
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.35 E-value=1.9e-11 Score=151.64 Aligned_cols=106 Identities=20% Similarity=0.316 Sum_probs=94.1
Q ss_pred EEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccC-CCeeEEEEeCccccccCcccCCEEEEECC---
Q 001098 994 VIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHD-ASCLALLMDGSASLGLDLSFVTRVFLMEP--- 1069 (1158)
Q Consensus 994 VLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~-~~~~VLL~s~agg~GLNLt~An~VI~~Dp--- 1069 (1158)
.+||+......+.+.+.|...|+.+..++|+++.++|.++++.|+++ ...+||++|.+++.|||+ .+++||+++.
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP 401 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-
T ss_pred CEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc
Confidence 37778889999999999999999999999999999999999999972 458999999999999999 9999999999
Q ss_pred -----------CCCcChHHHHHhcccccCCC-CcEEEEEEEeC
Q 001098 1070 -----------IWDRSMEEQVISRAHRMGAT-RPIHVETLAMR 1100 (1158)
Q Consensus 1070 -----------~WNP~~e~QAigRahRiGQ~-k~V~V~rLi~~ 1100 (1158)
+++++...|++||++|.|+. .+-.+|.+...
T Consensus 402 ~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 402 SINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp ----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 78888999999999999987 35667666443
No 60
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.34 E-value=8.7e-12 Score=148.96 Aligned_cols=94 Identities=13% Similarity=0.032 Sum_probs=85.2
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEEC--
Q 001098 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLME-- 1068 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~D-- 1068 (1158)
+.++|||++.....+.+.+.|...|+.+..++|.+ ++++++.|+++ ...||++|.+++.|+|+.. ++||.+|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g-~~~vLVaT~v~~~GiDip~-~~VI~~~~~ 261 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLT-DWDFVVTTDISEMGANFRA-GRVIDPRRC 261 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSS-CCSEEEECGGGGSSCCCCC-SEEEECCEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccC-CceEEEECCHHHhCcCCCC-CEEEECCCc
Confidence 35899999999999999999999999999999864 46899999866 5789999999999999999 9999988
Q ss_pred ------------------CCCCcChHHHHHhcccccCCCC
Q 001098 1069 ------------------PIWDRSMEEQVISRAHRMGATR 1090 (1158)
Q Consensus 1069 ------------------p~WNP~~e~QAigRahRiGQ~k 1090 (1158)
++.++....|++||++|.|...
T Consensus 262 ~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~ 301 (451)
T 2jlq_A 262 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 301 (451)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred ccccccccccceeeecccccCCHHHHHHhccccCCCCCCC
Confidence 8888999999999999999844
No 61
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.30 E-value=1.7e-11 Score=145.79 Aligned_cols=93 Identities=17% Similarity=0.105 Sum_probs=77.9
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEE----
Q 001098 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFL---- 1066 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~---- 1066 (1158)
+.++|||+......+.+.+.|...|++...++| ++|.++++.|+++ .+.||++|.+.+.|+|+. +++||+
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g-~~~vLVaT~v~e~GiDip-v~~VI~~g~~ 250 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQK-KPDFILATDIAEMGANLC-VERVLDCRTA 250 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------C-CCSEEEESSSTTCCTTCC-CSEEEECCEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCC-CceEEEECChhheeeccC-ceEEEeCCcc
Confidence 579999999999999999999999999999999 4688999999876 578999999999999999 999985
Q ss_pred ---------------ECCCCCcChHHHHHhcccccCCC
Q 001098 1067 ---------------MEPIWDRSMEEQVISRAHRMGAT 1089 (1158)
Q Consensus 1067 ---------------~Dp~WNP~~e~QAigRahRiGQ~ 1089 (1158)
++++.+++...|++||+.|.|..
T Consensus 251 ~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~ 288 (440)
T 1yks_A 251 FKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR 288 (440)
T ss_dssp EEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred ceeeecccccceeeccccccCHHHHHHhccccCCCCCC
Confidence 89999999999999999999543
No 62
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.30 E-value=9.9e-12 Score=139.90 Aligned_cols=110 Identities=20% Similarity=0.211 Sum_probs=97.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
.+.++|||+......+.+.+.|...|+.+..++|.++..+|..+++.|+++ .+.||++|.+++.|+|+..+++||++|+
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g-~~~vLVaT~va~~Gidi~~v~~VI~~d~ 105 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG-EVRVLVATDVAARGLDIPQVDLVVHYRM 105 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT-SCCEEEECSTTTCSTTCCCCSEEEESSC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC-CceEEEEechhhcCccccceeEEEEcCC
Confidence 478999999999999999999999999999999999999999999999977 5789999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeCCC
Q 001098 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~T 1102 (1158)
+|++....|++||++|.|+.. .++.|+....
T Consensus 106 p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~e 136 (300)
T 3i32_A 106 PDRAEAYQHRSGRTGRAGRGG--RVVLLYGPRE 136 (300)
T ss_dssp CSSTTHHHHHHTCCC-----C--EEEEEECSST
T ss_pred CCCHHHHHHHccCcCcCCCCc--eEEEEeChHH
Confidence 999999999999999999874 5556776653
No 63
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.29 E-value=3.4e-11 Score=149.79 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=85.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEE---
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFL--- 1066 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~--- 1066 (1158)
.+.++|||+......+.+.+.|...|+++..++| ++|.++++.|+++ .+.||++|.+.+.|||+. +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g-~~~VLVaTdv~e~GIDip-v~~VI~~g~ 482 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNG-DWDFVITTDISEMGANFG-ASRVIDCRK 482 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTC-CCSEEEECGGGGTTCCCC-CSEEEECCE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCC-CceEEEECchhhcceeeC-CcEEEECCC
Confidence 4679999999999999999999999999999999 3799999999876 578999999999999999 999997
Q ss_pred -----------------ECCCCCcChHHHHHhccccc-CCCCc
Q 001098 1067 -----------------MEPIWDRSMEEQVISRAHRM-GATRP 1091 (1158)
Q Consensus 1067 -----------------~Dp~WNP~~e~QAigRahRi-GQ~k~ 1091 (1158)
+|++.+++...|++||+.|. |+.-.
T Consensus 483 ~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ 525 (673)
T 2wv9_A 483 SVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGD 525 (673)
T ss_dssp ECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCE
T ss_pred cccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCE
Confidence 56778888999999999999 44433
No 64
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.27 E-value=3e-11 Score=144.60 Aligned_cols=107 Identities=12% Similarity=0.038 Sum_probs=89.6
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEE----
Q 001098 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFL---- 1066 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~---- 1066 (1158)
+.++|||+......+.+.+.|...|+.+..++|. +|.++++.|+++ ...||++|.+++.|+|+.. ++||.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g-~~~iLVaT~v~~~GiDip~-~~VI~~G~~ 263 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNG-DWDFVITTDISEMGANFGA-SRVIDCRKS 263 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSC-CCSEEEESSCC---CCCSC-SEEEECCEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCC-CceEEEECChHHhCeecCC-CEEEECCcc
Confidence 5689999999999999999999999999999984 688899999876 6789999999999999999 99998
Q ss_pred ----------------ECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHH
Q 001098 1067 ----------------MEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104 (1158)
Q Consensus 1067 ----------------~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIE 1104 (1158)
||++.+++...|++||+.|.|.... ..|.|+.....|
T Consensus 264 ~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G-~~~~~~~~~~~~ 316 (459)
T 2z83_A 264 VKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVG-DEYHYGGATSED 316 (459)
T ss_dssp CCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCCCCC
T ss_pred cccccccccccccccccCCCCCHHHHHHhccccCCCCCCCC-eEEEEEcccccc
Confidence 7899999999999999999996332 445566665333
No 65
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.27 E-value=6.1e-11 Score=146.47 Aligned_cols=102 Identities=12% Similarity=0.017 Sum_probs=88.3
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEE------
Q 001098 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRV------ 1064 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~V------ 1064 (1158)
+.++|||++.....+.+.+.|...|++...++|. +|.++++.|+++ ...||++|.+++.|||+. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g-~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLT-DWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHS-CCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCC-CcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 4689999999999999999999999999999984 788899999876 578999999999999996 8888
Q ss_pred --------------EEECCCCCcChHHHHHhcccccCCCCcEEEEEEEe
Q 001098 1065 --------------FLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAM 1099 (1158)
Q Consensus 1065 --------------I~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~ 1099 (1158)
|++|++-++....|++||+.|.|..+.. .|.|+.
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~-ai~l~~ 476 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDD-QYVFSG 476 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE-EEEECS
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCe-EEEEcc
Confidence 6667777788899999999999875433 455665
No 66
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.26 E-value=4.5e-11 Score=146.84 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=84.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEE----
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVF---- 1065 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI---- 1065 (1158)
.+.++|||++.....+.+.+.|.+.|++...++|+++.++ |.++ ..+||++|.+++.|||+. .++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~-~~~VLVATdVaerGIDId-V~~VI~~Gl 465 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTI-GDVVVVATDALMTGYTGD-FDSVIDCNT 465 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSS-SCEEEEECTTHHHHCCCC-BSEEEECCE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhC-CCcEEEECChHHccCCCC-CcEEEecCc
Confidence 5679999999999999999999999999999999998764 4433 348999999999999985 99888
Q ss_pred ------EEC-----------CCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHH
Q 001098 1066 ------LME-----------PIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104 (1158)
Q Consensus 1066 ------~~D-----------p~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIE 1104 (1158)
+|| .+-++....|++||+.| |..-. |.|+.++..+
T Consensus 466 ~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~---i~lvt~~e~~ 517 (666)
T 3o8b_A 466 CVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI---YRFVTPGERP 517 (666)
T ss_dssp EEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE---EEESCCCCBC
T ss_pred ccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE---EEEEecchhh
Confidence 455 56677889999999999 75433 7788776433
No 67
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.25 E-value=1.3e-11 Score=156.25 Aligned_cols=111 Identities=12% Similarity=0.118 Sum_probs=96.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHH-----------CCCeEEEEeCCCCHHHHHHHHHHhcc----CCCeeEEEEeCcccc
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTV-----------AGIKFAGMYSPMHSSNKIKSLDMFRH----DASCLALLMDGSASL 1054 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~-----------~gi~~~~ldG~t~~~~R~~~i~~F~~----~~~~~VLL~s~agg~ 1054 (1158)
++.++|||.......+.+.+.|.. .++.+..++|+++.++|.++++.|.. ....+|+|+|.+++.
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 467999999999999999998875 58889999999999999999999981 346899999999999
Q ss_pred ccCcccCCEEEEECC------------------CCCcChHHHHHhcccccCCCCcEEEEEEEeCCCH
Q 001098 1055 GLDLSFVTRVFLMEP------------------IWDRSMEEQVISRAHRMGATRPIHVETLAMRGTV 1103 (1158)
Q Consensus 1055 GLNLt~An~VI~~Dp------------------~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TI 1103 (1158)
|||+...++||.++. +.+.+...|++||++|. ++=.+|+|+++...
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 999999999999665 77888899999999998 45678888876544
No 68
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.22 E-value=2.5e-10 Score=141.64 Aligned_cols=101 Identities=17% Similarity=0.111 Sum_probs=88.2
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcc--------c
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLS--------F 1060 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt--------~ 1060 (1158)
..+.++|||+......+.|...|...||++..++|.++..+|..+...|+.+ .|+|+|..+|.|+++. +
T Consensus 430 ~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g---~VlIATdmAgRG~DI~l~~~V~~~g 506 (844)
T 1tf5_A 430 MTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG---AVTIATNMAGRGTDIKLGEGVKELG 506 (844)
T ss_dssp HHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT---CEEEEETTSSTTCCCCCCTTSGGGT
T ss_pred hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC---eEEEeCCccccCcCccccchhhhcC
Confidence 3567899999999999999999999999999999998766665454555433 5999999999999998 7
Q ss_pred CCEEEEECCCCCcChHHHHHhcccccCCCCcE
Q 001098 1061 VTRVFLMEPIWDRSMEEQVISRAHRMGATRPI 1092 (1158)
Q Consensus 1061 An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V 1092 (1158)
..|||.+|.+-++..+.|++||+.|.|.+-..
T Consensus 507 gl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 507 GLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp SEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred CcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 88999999999999999999999999976543
No 69
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.18 E-value=4.8e-10 Score=138.74 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=90.2
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccC-------
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFV------- 1061 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~A------- 1061 (1158)
..+..||||+......+.|...|.+.||++..++|.....+|..+.+.|+.+ .|+|+|..+|.|+++...
T Consensus 439 ~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G---~VtIATnmAgRGtDI~l~gn~~~~~ 515 (853)
T 2fsf_A 439 AKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA---AVTIATNMAGRGTDIVLGGSWQAEV 515 (853)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT---CEEEEESCCSSCSCCCTTCCHHHHH
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC---eEEEecccccCCcCccCCCchHhhh
Confidence 4678999999999999999999999999999999998777776667778765 599999999999998853
Q ss_pred ------------------------------CEEEEECCCCCcChHHHHHhcccccCCCCcEE
Q 001098 1062 ------------------------------TRVFLMEPIWDRSMEEQVISRAHRMGATRPIH 1093 (1158)
Q Consensus 1062 ------------------------------n~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~ 1093 (1158)
.|||.+|.+-++..+.|++||++|.|..-...
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~ 577 (853)
T 2fsf_A 516 AALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSR 577 (853)
T ss_dssp HHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred hhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEE
Confidence 69999999999999999999999999766433
No 70
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.16 E-value=1e-09 Score=148.90 Aligned_cols=84 Identities=7% Similarity=0.034 Sum_probs=67.2
Q ss_pred eEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEE----ECC------CCCcChHHHHHhccccc
Q 001098 1017 KFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFL----MEP------IWDRSMEEQVISRAHRM 1086 (1158)
Q Consensus 1017 ~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~----~Dp------~WNP~~e~QAigRahRi 1086 (1158)
.+...+|+++..+|..+.+.|.++ .++||++|.+.+.|+||.+-..||. ||. +.++....|++||++|.
T Consensus 1215 GIa~hHagL~~~~R~~VE~lF~~G-~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~ 1293 (1724)
T 4f92_B 1215 GVGYLHEGLSPMERRLVEQLFSSG-AIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRP 1293 (1724)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHHT-SBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCT
T ss_pred CEEEECCCCCHHHHHHHHHHHHCC-CCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCC
Confidence 356789999999999999999977 5899999999999999986555552 222 34667889999999999
Q ss_pred CCCCcEEEEEEEeCC
Q 001098 1087 GATRPIHVETLAMRG 1101 (1158)
Q Consensus 1087 GQ~k~V~V~rLi~~~ 1101 (1158)
|....-.++-++...
T Consensus 1294 g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1294 LQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp TTCSCEEEEEEEEGG
T ss_pred CCCCceEEEEEecch
Confidence 997776666565543
No 71
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.15 E-value=7.3e-10 Score=150.25 Aligned_cols=87 Identities=17% Similarity=0.137 Sum_probs=70.4
Q ss_pred CeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEE----ECCC------CCcChHHHHHhcccc
Q 001098 1016 IKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFL----MEPI------WDRSMEEQVISRAHR 1085 (1158)
Q Consensus 1016 i~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~----~Dp~------WNP~~e~QAigRahR 1085 (1158)
..+...+|+++.++|..+-+.|.++ .++||++|.+.+.|+||.+.+.||- |||. .++....|++|||+|
T Consensus 379 ~Gva~HHagL~~~~R~~vE~~F~~G-~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR 457 (1724)
T 4f92_B 379 YGFAIHHAGMTRVDRTLVEDLFADK-HIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGR 457 (1724)
T ss_dssp TTEEEECSSSCTHHHHHHHHHHHTT-CCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSC
T ss_pred cCEEEEcCCCCHHHHHHHHHHHHCC-CCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccC
Confidence 3456789999999999999999876 6899999999999999987766663 5553 356788999999999
Q ss_pred cCCCCcEEEEEEEeCCCH
Q 001098 1086 MGATRPIHVETLAMRGTV 1103 (1158)
Q Consensus 1086 iGQ~k~V~V~rLi~~~TI 1103 (1158)
.|....-.++-+...+..
T Consensus 458 ~g~d~~G~~ii~~~~~~~ 475 (1724)
T 4f92_B 458 PQYDTKGEGILITSHGEL 475 (1724)
T ss_dssp TTTCSCEEEEEEEESTTC
T ss_pred CCCCCccEEEEEecchhH
Confidence 998766666666666543
No 72
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.15 E-value=1.5e-09 Score=134.47 Aligned_cols=101 Identities=19% Similarity=0.127 Sum_probs=88.1
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccC-------
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFV------- 1061 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~A------- 1061 (1158)
..+..||||+......+.|...|.+.||++..++|.....++..+.+.|+.+ .|+|+|..+|.|+++...
T Consensus 458 ~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G---~VtIATnmAgRGtDI~l~~~~~~~~ 534 (922)
T 1nkt_A 458 AKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG---GVTVATNMAGRGTDIVLGGNVDFLT 534 (922)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT---CEEEEETTCSTTCCCCTTCCHHHHH
T ss_pred hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC---eEEEecchhhcCccccCCCCHHHHH
Confidence 4677899999999999999999999999999999998666665566777654 599999999999998853
Q ss_pred ---------------------------------------------CEEEEECCCCCcChHHHHHhcccccCCCCcE
Q 001098 1062 ---------------------------------------------TRVFLMEPIWDRSMEEQVISRAHRMGATRPI 1092 (1158)
Q Consensus 1062 ---------------------------------------------n~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V 1092 (1158)
.|||.+|.+-++..+.|++||+.|.|..-..
T Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s 610 (922)
T 1nkt_A 535 DQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGES 610 (922)
T ss_dssp HHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEE
T ss_pred HHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeE
Confidence 5999999999999999999999999976643
No 73
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.14 E-value=1.7e-10 Score=122.68 Aligned_cols=150 Identities=11% Similarity=0.104 Sum_probs=94.4
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh-----------cCCEEEEECc-ccHHH-H
Q 001098 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL-----------SRATLIVVPS-YLVDH-W 628 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~-----------s~~tLIVvP~-sLl~q-W 628 (1158)
+++||...+...++ +.++++.. .+|.|||+.++..+. .+++|||||. .|+.| |
T Consensus 34 l~~~Q~~~i~~~~~----------~~~~li~~----~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~ 99 (216)
T 3b6e_A 34 LRPYQMEVAQPALE----------GKNIIICL----PTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLF 99 (216)
T ss_dssp CCHHHHHHHHHHHT----------TCCEEEEC----SCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHH
T ss_pred chHHHHHHHHHHhc----------CCCEEEEc----CCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHH
Confidence 78999998855442 23466665 599999998877654 3689999997 57788 9
Q ss_pred HHHHHhhcCCCCeEEEEecCCCCcc--cccccCCCCEEEeechhhhhhhhcCCC---CCcccccceEEEEccccccCCCc
Q 001098 629 KTQIQQHVRPGQLHLFVWTDHKKPS--AHSLAWDYDVVITTFNRLSAEWGRRKK---SPMMQVHWLRVMLDEGHTLGSSL 703 (1158)
Q Consensus 629 ~~Ei~k~~~~~~l~v~v~~g~~~~~--~~~l~~~~DVVItTY~~L~~e~~~~~~---~~L~~~~w~rVIlDEAH~ikn~~ 703 (1158)
.+++.++... .+++..+.|..... .......++|+|+||+.+......... ..+....|++||+||||++....
T Consensus 100 ~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~ 178 (216)
T 3b6e_A 100 RKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEA 178 (216)
T ss_dssp HHTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------
T ss_pred HHHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCC
Confidence 9999999764 46777777654322 222334689999999999866543221 11334578999999999997543
Q ss_pred hHHHHHHHHH-Hc--------------ccCeEEEEeCC
Q 001098 704 NLTNKLQMAI-SL--------------TASNRWLLTGT 726 (1158)
Q Consensus 704 s~t~~~~~~~-~L--------------~a~~RwlLTGT 726 (1158)
.......... .. ...+.++||||
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 179 VYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred cHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 3222221111 11 34678999998
No 74
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.05 E-value=1e-08 Score=124.62 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=89.9
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcc--------c
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLS--------F 1060 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt--------~ 1060 (1158)
..+.+||||+......+.|...|.+.|+++..++|.....+|.-+...|+.+ .|+|+|..+|.|++.. +
T Consensus 472 ~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g---~VtVATdmAgRGtDI~lg~~V~~~G 548 (822)
T 3jux_A 472 KKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG---MVTIATNMAGRGTDIKLGPGVAELG 548 (822)
T ss_dssp HHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT---CEEEEETTTTTTCCCCCCTTTTTTT
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC---eEEEEcchhhCCcCccCCcchhhcC
Confidence 3578999999999999999999999999999999985444444444556544 5999999999999997 6
Q ss_pred CCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001098 1061 VTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1061 An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
..|||.+|++-++..+.|++||+.|.|++-.... |++.+
T Consensus 549 glhVInte~Pes~r~y~qriGRTGRqG~~G~a~~--fvsle 587 (822)
T 3jux_A 549 GLCIIGTERHESRRIDNQLRGRAGRQGDPGESIF--FLSLE 587 (822)
T ss_dssp SCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEE--EEETT
T ss_pred CCEEEecCCCCCHHHHHHhhCccccCCCCeeEEE--Eechh
Confidence 6799999999999999999999999998775433 44443
No 75
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.03 E-value=1.5e-09 Score=117.58 Aligned_cols=130 Identities=13% Similarity=0.071 Sum_probs=87.2
Q ss_pred CcccchHHHHHHHHh------------cCCEEEEECc-ccHHHHHHHHHhhcCCCCeEEEEecCCCCc-ccccccCCCCE
Q 001098 598 RLALCEPLDSVRLYL------------SRATLIVVPS-YLVDHWKTQIQQHVRPGQLHLFVWTDHKKP-SAHSLAWDYDV 663 (1158)
Q Consensus 598 ~mGLGKTlqaiall~------------s~~tLIVvP~-sLl~qW~~Ei~k~~~~~~l~v~v~~g~~~~-~~~~l~~~~DV 663 (1158)
.+|.|||+..+..++ ...+|||||. .|..||.+++.++.....+++..+.|.... ........++|
T Consensus 70 ~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i 149 (236)
T 2pl3_A 70 KTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINI 149 (236)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSE
T ss_pred CCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCE
Confidence 599999987554321 2469999997 789999999999986545777777665432 22222347899
Q ss_pred EEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcc-cCeEEEEeCCCCC
Q 001098 664 VITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLT-ASNRWLLTGTPTP 729 (1158)
Q Consensus 664 VItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~-a~~RwlLTGTPiq 729 (1158)
+|+|++.+....... ..+....+++||+||||++.+..-.......+..+. ...++++|||+..
T Consensus 150 iv~Tp~~l~~~l~~~--~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 214 (236)
T 2pl3_A 150 LVCTPGRLLQHMDET--VSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTK 214 (236)
T ss_dssp EEECHHHHHHHHHHC--SSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCH
T ss_pred EEECHHHHHHHHHhc--CCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCH
Confidence 999999997654322 123345678999999999875432222223334443 4558999999743
No 76
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.03 E-value=1e-09 Score=117.55 Aligned_cols=153 Identities=13% Similarity=0.068 Sum_probs=101.1
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHhc--------CCEEEEECc-ccHHHHHHHH
Q 001098 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLS--------RATLIVVPS-YLVDHWKTQI 632 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~s--------~~tLIVvP~-sLl~qW~~Ei 632 (1158)
++++|...+...++. .+.++.. .+|.|||+.++..+.. .++|||||. .|+.||.+++
T Consensus 37 ~~~~Q~~~i~~~~~~----------~~~li~~----~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 102 (220)
T 1t6n_A 37 PSEVQHECIPQAILG----------MDVLCQA----KSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEY 102 (220)
T ss_dssp CCHHHHHHHHHHHTT----------CCEEEEC----CTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC----------CCEEEEC----CCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHH
Confidence 578998887544432 3456555 5999999877665432 379999996 7899999999
Q ss_pred HhhcCCC-CeEEEEecCCCCccc--ccc-cCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHH
Q 001098 633 QQHVRPG-QLHLFVWTDHKKPSA--HSL-AWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNK 708 (1158)
Q Consensus 633 ~k~~~~~-~l~v~v~~g~~~~~~--~~l-~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~ 708 (1158)
.++.... .+++..+.|...... ..+ ...++|+|+|++.+...... ..+..-.+++||+||||.+.........
T Consensus 103 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~---~~~~~~~~~~lViDEah~~~~~~~~~~~ 179 (220)
T 1t6n_A 103 ERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN---KSLNLKHIKHFILDECDKMLEQLDMRRD 179 (220)
T ss_dssp HHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT---TSSCCTTCCEEEEESHHHHHSSHHHHHH
T ss_pred HHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh---CCCCcccCCEEEEcCHHHHhcccCcHHH
Confidence 9997532 477777777543221 111 12579999999998765432 2233446789999999998653222222
Q ss_pred HHHH-HHcc-cCeEEEEeCCCCCCC
Q 001098 709 LQMA-ISLT-ASNRWLLTGTPTPNT 731 (1158)
Q Consensus 709 ~~~~-~~L~-a~~RwlLTGTPiqN~ 731 (1158)
...+ ..+. ....+++||||..+-
T Consensus 180 ~~~i~~~~~~~~~~i~~SAT~~~~~ 204 (220)
T 1t6n_A 180 VQEIFRMTPHEKQVMMFSATLSKEI 204 (220)
T ss_dssp HHHHHHTSCSSSEEEEEESCCCTTT
T ss_pred HHHHHHhCCCcCeEEEEEeecCHHH
Confidence 2222 2333 457899999996543
No 77
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.01 E-value=6.7e-10 Score=117.54 Aligned_cols=149 Identities=15% Similarity=0.045 Sum_probs=98.7
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh-----------cCCEEEEECc-ccHHHHH
Q 001098 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL-----------SRATLIVVPS-YLVDHWK 629 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~-----------s~~tLIVvP~-sLl~qW~ 629 (1158)
++++|...+....+ +.+.++.. .+|.|||+.++..+. ...+|||||. .|+.||.
T Consensus 24 ~~~~Q~~~i~~~~~----------~~~~li~~----~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~ 89 (207)
T 2gxq_A 24 PTPIQAAALPLALE----------GKDLIGQA----RTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVA 89 (207)
T ss_dssp CCHHHHHHHHHHHT----------TCCEEEEC----CTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHHcC----------CCCEEEEC----CCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHH
Confidence 67899888754442 23456555 599999987554332 1469999997 7899999
Q ss_pred HHHHhhcCCCCeEEEEecCCCCc--ccccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHH
Q 001098 630 TQIQQHVRPGQLHLFVWTDHKKP--SAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTN 707 (1158)
Q Consensus 630 ~Ei~k~~~~~~l~v~v~~g~~~~--~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~ 707 (1158)
+++.++++. +++..+.|.... ....+...++|+|+|++.+...... ..+..-.+++||+||||++.+......
T Consensus 90 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~---~~~~~~~~~~iViDEah~~~~~~~~~~ 164 (207)
T 2gxq_A 90 SELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ---GVLDLSRVEVAVLDEADEMLSMGFEEE 164 (207)
T ss_dssp HHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH---TSSCCTTCSEEEEESHHHHHHTTCHHH
T ss_pred HHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc---CCcchhhceEEEEEChhHhhccchHHH
Confidence 999999865 666666654432 1222334789999999998765443 222334678999999998854322222
Q ss_pred HHHHHHHcc-cCeEEEEeCCCCC
Q 001098 708 KLQMAISLT-ASNRWLLTGTPTP 729 (1158)
Q Consensus 708 ~~~~~~~L~-a~~RwlLTGTPiq 729 (1158)
.......+. ....+++||||..
T Consensus 165 ~~~i~~~~~~~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 165 VEALLSATPPSRQTLLFSATLPS 187 (207)
T ss_dssp HHHHHHTSCTTSEEEEECSSCCH
T ss_pred HHHHHHhCCccCeEEEEEEecCH
Confidence 222333333 4568999999843
No 78
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.99 E-value=2.4e-09 Score=114.77 Aligned_cols=127 Identities=11% Similarity=0.026 Sum_probs=84.4
Q ss_pred CcccchHHHHHHHHh--------cCCEEEEECc-ccHHHHHHHHHhhcCCC----CeEEEEecCCCCc--ccccccCCCC
Q 001098 598 RLALCEPLDSVRLYL--------SRATLIVVPS-YLVDHWKTQIQQHVRPG----QLHLFVWTDHKKP--SAHSLAWDYD 662 (1158)
Q Consensus 598 ~mGLGKTlqaiall~--------s~~tLIVvP~-sLl~qW~~Ei~k~~~~~----~l~v~v~~g~~~~--~~~~l~~~~D 662 (1158)
.+|.|||+..+..+. ...+|||||. .|+.||.+++.++.... .+++..+.|.... ....+...+|
T Consensus 49 ~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 128 (219)
T 1q0u_A 49 QTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPH 128 (219)
T ss_dssp CSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCS
T ss_pred CCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCC
Confidence 599999987544332 2479999997 68899999999987532 3566665554322 1222334789
Q ss_pred EEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcc-cCeEEEEeCCC
Q 001098 663 VVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLT-ASNRWLLTGTP 727 (1158)
Q Consensus 663 VVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~-a~~RwlLTGTP 727 (1158)
|+|+|++.+...... ..+..-.+..||+||||.+.+..-.......+..+. ....+++|||+
T Consensus 129 Iiv~Tp~~l~~~l~~---~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 191 (219)
T 1q0u_A 129 IVIGTPGRINDFIRE---QALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATI 191 (219)
T ss_dssp EEEECHHHHHHHHHT---TCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCC
T ss_pred EEEeCHHHHHHHHHc---CCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCC
Confidence 999999998765432 223334678899999999875432222223334443 45689999997
No 79
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.98 E-value=3e-09 Score=112.49 Aligned_cols=150 Identities=17% Similarity=0.044 Sum_probs=99.3
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh--------cCCEEEEECc-ccHHHHHHHH
Q 001098 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL--------SRATLIVVPS-YLVDHWKTQI 632 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~--------s~~tLIVvP~-sLl~qW~~Ei 632 (1158)
++++|...+-..+. +.+.++.. .+|.|||+.++..+. ..++|||||. .|+.||.+++
T Consensus 26 ~~~~Q~~~i~~~~~----------~~~~lv~a----pTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 91 (206)
T 1vec_A 26 PSPIQEESIPIALS----------GRDILARA----KNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQIC 91 (206)
T ss_dssp CCHHHHHHHHHHHT----------TCCEEEEC----CSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcc----------CCCEEEEC----CCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHH
Confidence 67899888744332 23345544 599999987664432 1369999996 6889999999
Q ss_pred HhhcCCC-CeEEEEecCCCCcc--cccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHH
Q 001098 633 QQHVRPG-QLHLFVWTDHKKPS--AHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKL 709 (1158)
Q Consensus 633 ~k~~~~~-~l~v~v~~g~~~~~--~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~ 709 (1158)
.++.... .+++..+.|..... .......++|+|+|++.+...... ..+..-.+++||+||||.+....-.....
T Consensus 92 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~---~~~~~~~~~~lViDEah~~~~~~~~~~l~ 168 (206)
T 1vec_A 92 IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK---GVAKVDHVQMIVLDEADKLLSQDFVQIME 168 (206)
T ss_dssp HHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT---TCSCCTTCCEEEEETHHHHTSTTTHHHHH
T ss_pred HHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc---CCcCcccCCEEEEEChHHhHhhCcHHHHH
Confidence 9987542 46677766654322 222334789999999998765442 22233467899999999887643222222
Q ss_pred HHHHHcc-cCeEEEEeCCCC
Q 001098 710 QMAISLT-ASNRWLLTGTPT 728 (1158)
Q Consensus 710 ~~~~~L~-a~~RwlLTGTPi 728 (1158)
.....++ ....+++|||+.
T Consensus 169 ~i~~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 169 DIILTLPKNRQILLYSATFP 188 (206)
T ss_dssp HHHHHSCTTCEEEEEESCCC
T ss_pred HHHHhCCccceEEEEEeeCC
Confidence 2333444 567899999984
No 80
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.97 E-value=2.5e-09 Score=114.82 Aligned_cols=151 Identities=16% Similarity=0.065 Sum_probs=96.6
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHH-HHHh-------cCCEEEEECc-ccHHHHHHHH
Q 001098 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSV-RLYL-------SRATLIVVPS-YLVDHWKTQI 632 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqai-all~-------s~~tLIVvP~-sLl~qW~~Ei 632 (1158)
++++|...+..... +.+.++.. .+|.|||+..+ .++. ...+|||||. .|..||.+++
T Consensus 37 ~~~~Q~~~i~~~~~----------~~~~lv~~----pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 102 (224)
T 1qde_A 37 PSAIQQRAIMPIIE----------GHDVLAQA----QSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVV 102 (224)
T ss_dssp CCHHHHHHHHHHHT----------TCCEEEEC----CTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhc----------CCCEEEEC----CCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHH
Confidence 67888887744332 23455555 59999998843 3332 2489999997 6889999999
Q ss_pred HhhcCCCCeEEEEecCCCCc-ccccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHH
Q 001098 633 QQHVRPGQLHLFVWTDHKKP-SAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQM 711 (1158)
Q Consensus 633 ~k~~~~~~l~v~v~~g~~~~-~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~ 711 (1158)
.++.....+++..+.|.... ........++|+|+|++.+....... .+..-.+.+||+||||.+.+..-.......
T Consensus 103 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~---~~~~~~~~~iViDEah~~~~~~~~~~l~~i 179 (224)
T 1qde_A 103 MALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR---RFRTDKIKMFILDEADEMLSSGFKEQIYQI 179 (224)
T ss_dssp HHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTT---SSCCTTCCEEEEETHHHHHHTTCHHHHHHH
T ss_pred HHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhC---CcchhhCcEEEEcChhHHhhhhhHHHHHHH
Confidence 99976555777776664332 12222235899999999987654422 233346789999999998643322222223
Q ss_pred HHHcc-cCeEEEEeCCCCC
Q 001098 712 AISLT-ASNRWLLTGTPTP 729 (1158)
Q Consensus 712 ~~~L~-a~~RwlLTGTPiq 729 (1158)
...+. ....+++|||+..
T Consensus 180 ~~~~~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 180 FTLLPPTTQVVLLSATMPN 198 (224)
T ss_dssp HHHSCTTCEEEEEESSCCH
T ss_pred HHhCCccCeEEEEEeecCH
Confidence 33343 4568899999854
No 81
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.95 E-value=3.8e-09 Score=114.14 Aligned_cols=149 Identities=12% Similarity=-0.035 Sum_probs=97.9
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHH-HHh-------cCCEEEEECc-ccHHHHHHHH
Q 001098 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVR-LYL-------SRATLIVVPS-YLVDHWKTQI 632 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaia-ll~-------s~~tLIVvP~-sLl~qW~~Ei 632 (1158)
++++|...+-.... +.+.|+.. .+|.|||+..+. ++. ...+|||||. .|..||.+++
T Consensus 47 ~~~~Q~~~i~~~~~----------~~~~l~~a----~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 112 (230)
T 2oxc_A 47 PSPVQLKAIPLGRC----------GLDLIVQA----KSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVI 112 (230)
T ss_dssp CCHHHHHHHHHHHT----------TCCEEEEC----CTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----------CCCEEEEC----CCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHH
Confidence 56888887744332 23445554 599999988543 221 1589999996 7899999999
Q ss_pred HhhcCCC-CeEEEEecCCCCc-ccccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCc-hHHHHH
Q 001098 633 QQHVRPG-QLHLFVWTDHKKP-SAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSL-NLTNKL 709 (1158)
Q Consensus 633 ~k~~~~~-~l~v~v~~g~~~~-~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~-s~t~~~ 709 (1158)
.++.... .+++..+.|.... ........++|+|+|++.+...... ..+..-.+++||+||||++.+.. -.....
T Consensus 113 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~---~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 189 (230)
T 2oxc_A 113 TAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIEL---DYLNPGSIRLFILDEADKLLEEGSFQEQIN 189 (230)
T ss_dssp HHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHT---TSSCGGGCCEEEESSHHHHHSTTSSHHHHH
T ss_pred HHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhc---CCcccccCCEEEeCCchHhhcCcchHHHHH
Confidence 9987432 4777777765432 2222234789999999999765432 22333467899999999985432 112222
Q ss_pred HHHHHcc-cCeEEEEeCCC
Q 001098 710 QMAISLT-ASNRWLLTGTP 727 (1158)
Q Consensus 710 ~~~~~L~-a~~RwlLTGTP 727 (1158)
.....+. ....+++|||+
T Consensus 190 ~i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 190 WIYSSLPASKQMLAVSATY 208 (230)
T ss_dssp HHHHHSCSSCEEEEEESCC
T ss_pred HHHHhCCCCCeEEEEEecc
Confidence 2334454 45689999996
No 82
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.92 E-value=2.7e-09 Score=117.03 Aligned_cols=151 Identities=12% Similarity=0.049 Sum_probs=97.9
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHhc-----------------CCEEEEECc-c
Q 001098 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLS-----------------RATLIVVPS-Y 623 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~s-----------------~~tLIVvP~-s 623 (1158)
++++|...+-..++ +.+.++.. .+|.|||+..+..+.. ..+|||||. .
T Consensus 46 ~~~~Q~~~i~~i~~----------~~~~l~~a----~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 111 (253)
T 1wrb_A 46 PTPIQKNAIPAILE----------HRDIMACA----QTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRE 111 (253)
T ss_dssp CCHHHHHHHHHHHT----------TCCEEEEC----CTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHH
T ss_pred CCHHHHHHHHHHhC----------CCCEEEEC----CCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHH
Confidence 57899888744432 23345554 5999999876543321 379999997 6
Q ss_pred cHHHHHHHHHhhcCCCCeEEEEecCCCCc--ccccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCC
Q 001098 624 LVDHWKTQIQQHVRPGQLHLFVWTDHKKP--SAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS 701 (1158)
Q Consensus 624 Ll~qW~~Ei~k~~~~~~l~v~v~~g~~~~--~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn 701 (1158)
|..||.+++.++.....+++..+.|.... ....+...+||+|+|++.+....... .+..-.+.+||+||||++.+
T Consensus 112 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~---~~~~~~~~~lViDEah~~~~ 188 (253)
T 1wrb_A 112 LAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN---KISLEFCKYIVLDEADRMLD 188 (253)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT---SBCCTTCCEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC---CCChhhCCEEEEeCHHHHHh
Confidence 89999999999976555666666554332 22233457899999999998654422 22234568899999999864
Q ss_pred CchHHHHHHHHHH--cc---cCeEEEEeCCCCC
Q 001098 702 SLNLTNKLQMAIS--LT---ASNRWLLTGTPTP 729 (1158)
Q Consensus 702 ~~s~t~~~~~~~~--L~---a~~RwlLTGTPiq 729 (1158)
..-.......+.. +. ....+++||||..
T Consensus 189 ~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~ 221 (253)
T 1wrb_A 189 MGFEPQIRKIIEESNMPSGINRQTLMFSATFPK 221 (253)
T ss_dssp TTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCH
T ss_pred CchHHHHHHHHhhccCCCCCCcEEEEEEEeCCH
Confidence 3211222222222 22 3458999999743
No 83
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.89 E-value=3.6e-10 Score=140.88 Aligned_cols=74 Identities=24% Similarity=0.445 Sum_probs=57.6
Q ss_pred cCCCcccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchh
Q 001098 159 IMPCMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKT 238 (1158)
Q Consensus 159 ~~p~l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKT 238 (1158)
..|.+...|+|||++|++||....... .....+|||||||||||||
T Consensus 48 ~~p~l~~~LrpyQ~~gv~~l~~~~~~~----------------------------------~~~~~~g~ILad~mGlGKT 93 (644)
T 1z3i_X 48 VDPVLSKVLRPHQREGVKFLWDCVTGR----------------------------------RIENSYGCIMADEMGLGKT 93 (644)
T ss_dssp CCHHHHTTCCHHHHHHHHHHHHHHTTS----------------------------------SSTTCCEEEECCCTTSCHH
T ss_pred eChhhhhcccHHHHHHHHHHHHhhhcc----------------------------------cccCCCCeEeeeCCCchHH
Confidence 345788899999999999998733210 0012258999999999999
Q ss_pred HHHHHHHHhh-----------CCCcccCCccccccceec
Q 001098 239 ITALSLILKT-----------QGTLADPPDGVKIIWCTH 266 (1158)
Q Consensus 239 l~~LalI~~~-----------~~~~~~~P~~~~~~W~~~ 266 (1158)
+|+|++|... +..++++|.+++.||..+
T Consensus 94 ~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E 132 (644)
T 1z3i_X 94 LQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNE 132 (644)
T ss_dssp HHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHH
Confidence 9999999742 236889999999999965
No 84
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.87 E-value=6.5e-09 Score=113.91 Aligned_cols=152 Identities=14% Similarity=0.038 Sum_probs=98.7
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh--------cCCEEEEECc-ccHHHHHHHH
Q 001098 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL--------SRATLIVVPS-YLVDHWKTQI 632 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~--------s~~tLIVvP~-sLl~qW~~Ei 632 (1158)
++++|...+-..+. +.+.|+.. .+|.|||+..+..++ ...+|||+|. .|..||.+++
T Consensus 66 ~~~~Q~~~i~~i~~----------~~~~lv~a----~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~ 131 (249)
T 3ber_A 66 PTKIQIEAIPLALQ----------GRDIIGLA----ETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQF 131 (249)
T ss_dssp CCHHHHHHHHHHHT----------TCCEEEEC----CTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----------CCCEEEEc----CCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHH
Confidence 56888887744332 23445544 599999987654332 1359999997 6889999999
Q ss_pred HhhcCCCCeEEEEecCCCCcc--cccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHH
Q 001098 633 QQHVRPGQLHLFVWTDHKKPS--AHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQ 710 (1158)
Q Consensus 633 ~k~~~~~~l~v~v~~g~~~~~--~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~ 710 (1158)
.++.....+++..+.|..... ...+...++|+|+|++.+........ .+..-.+++||+||||++.+..-......
T Consensus 132 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~l~~~~~lViDEah~l~~~~~~~~l~~ 209 (249)
T 3ber_A 132 EALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK--GFNLRALKYLVMDEADRILNMDFETEVDK 209 (249)
T ss_dssp HHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST--TCCCTTCCEEEECSHHHHHHTTCHHHHHH
T ss_pred HHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC--CcCccccCEEEEcChhhhhccChHHHHHH
Confidence 998754346666666644321 22234578999999999976543211 12234678999999998865432222223
Q ss_pred HHHHcc-cCeEEEEeCCCCC
Q 001098 711 MAISLT-ASNRWLLTGTPTP 729 (1158)
Q Consensus 711 ~~~~L~-a~~RwlLTGTPiq 729 (1158)
.+..+. ....+++|||+..
T Consensus 210 i~~~~~~~~~~l~~SAT~~~ 229 (249)
T 3ber_A 210 ILKVIPRDRKTFLFSATMTK 229 (249)
T ss_dssp HHHSSCSSSEEEEEESSCCH
T ss_pred HHHhCCCCCeEEEEeccCCH
Confidence 333443 4668999999853
No 85
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.87 E-value=8.2e-10 Score=141.05 Aligned_cols=74 Identities=24% Similarity=0.330 Sum_probs=57.9
Q ss_pred cccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHH
Q 001098 163 MKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITAL 242 (1158)
Q Consensus 163 l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~L 242 (1158)
...+|+|||++|++||+.... .-+|||||||||||||+|+|
T Consensus 233 ~~~~Lr~yQ~egv~~l~~~~~---------------------------------------~~~~~ILademGlGKT~~ai 273 (800)
T 3mwy_W 233 KGGELRDFQLTGINWMAFLWS---------------------------------------KGDNGILADEMGLGKTVQTV 273 (800)
T ss_dssp CSSCCCTHHHHHHHHHHHHHT---------------------------------------TTCCEEECCCTTSSTTHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhh---------------------------------------cCCCEEEEeCCCcchHHHHH
Confidence 357999999999999986210 11489999999999999999
Q ss_pred HHHHh-------hCCCcccCCccccccceec----cCCCeeeee
Q 001098 243 SLILK-------TQGTLADPPDGVKIIWCTH----NGDPRCGYY 275 (1158)
Q Consensus 243 alI~~-------~~~~~~~~P~~~~~~W~~~----~~~~~~~yy 275 (1158)
++|.. .+++++++|.+++.||..+ .+...+..|
T Consensus 274 ~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~v~~~ 317 (800)
T 3mwy_W 274 AFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICY 317 (800)
T ss_dssp HHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTTCCEEEC
T ss_pred HHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHHCCCceEEEE
Confidence 99863 3467999999999999955 444444444
No 86
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.84 E-value=1.5e-08 Score=110.02 Aligned_cols=129 Identities=15% Similarity=0.044 Sum_probs=81.3
Q ss_pred CcccchHHHHHHHHh--------cCCEEEEECc-ccHHHHHHHHHhhcCCCCeEEEEecCCCC--ccccccc-CCCCEEE
Q 001098 598 RLALCEPLDSVRLYL--------SRATLIVVPS-YLVDHWKTQIQQHVRPGQLHLFVWTDHKK--PSAHSLA-WDYDVVI 665 (1158)
Q Consensus 598 ~mGLGKTlqaiall~--------s~~tLIVvP~-sLl~qW~~Ei~k~~~~~~l~v~v~~g~~~--~~~~~l~-~~~DVVI 665 (1158)
.+|.|||+..+..+. ...+|||+|. .|..||.+++.++.....+.+....+... .....+. ..++|+|
T Consensus 75 pTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv 154 (237)
T 3bor_A 75 QSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVV 154 (237)
T ss_dssp CSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEE
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEE
Confidence 599999987554432 2489999996 68899999999987644455555554322 1122222 2389999
Q ss_pred eechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcc-cCeEEEEeCCCCC
Q 001098 666 TTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLT-ASNRWLLTGTPTP 729 (1158)
Q Consensus 666 tTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~-a~~RwlLTGTPiq 729 (1158)
+|++.+....... .+..-.+.+||+||||.+.+..-.......+..+. ....+++|||+..
T Consensus 155 ~Tp~~l~~~l~~~---~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~ 216 (237)
T 3bor_A 155 GTPGRVFDMLNRR---YLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPT 216 (237)
T ss_dssp ECHHHHHHHHHTT---SSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCH
T ss_pred ECHHHHHHHHHhC---CcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCH
Confidence 9999887654322 22334578999999998753322222233344444 3467899999854
No 87
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.81 E-value=2.8e-08 Score=106.92 Aligned_cols=128 Identities=12% Similarity=0.091 Sum_probs=81.4
Q ss_pred CcccchHHHHHHHHh--------------cCCEEEEECc-ccHHHHHHHHHhhcCCCCeEEEEecCC-CC-cccccccCC
Q 001098 598 RLALCEPLDSVRLYL--------------SRATLIVVPS-YLVDHWKTQIQQHVRPGQLHLFVWTDH-KK-PSAHSLAWD 660 (1158)
Q Consensus 598 ~mGLGKTlqaiall~--------------s~~tLIVvP~-sLl~qW~~Ei~k~~~~~~l~v~v~~g~-~~-~~~~~l~~~ 660 (1158)
..|.|||+..+..+. ...+|||+|. .|..||.+++.++...+ +++..+.|. .. .....+...
T Consensus 65 pTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 143 (228)
T 3iuy_A 65 QTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKG-LKSICIYGGRNRNGQIEDISKG 143 (228)
T ss_dssp CTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTT-CCEEEECC------CHHHHHSC
T ss_pred CCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccC-ceEEEEECCCChHHHHHHhcCC
Confidence 599999987554321 2468999996 48899999999986443 445544443 22 222334457
Q ss_pred CCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcc-cCeEEEEeCCCCC
Q 001098 661 YDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLT-ASNRWLLTGTPTP 729 (1158)
Q Consensus 661 ~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~-a~~RwlLTGTPiq 729 (1158)
+||+|+|++.+...... ..+.--.+.+||+||||.+.+..-.......+..+. ....+++|||.-.
T Consensus 144 ~~iiv~Tp~~l~~~~~~---~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 210 (228)
T 3iuy_A 144 VDIIIATPGRLNDLQMN---NSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPD 210 (228)
T ss_dssp CSEEEECHHHHHHHHHT---TCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCH
T ss_pred CCEEEECHHHHHHHHHc---CCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCH
Confidence 89999999998765432 222334578999999998765432222223334444 4567889999643
No 88
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.80 E-value=2.3e-09 Score=129.49 Aligned_cols=68 Identities=25% Similarity=0.289 Sum_probs=56.9
Q ss_pred CCCcccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhH
Q 001098 160 MPCMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTI 239 (1158)
Q Consensus 160 ~p~l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl 239 (1158)
++.++.+|+|||++|+.||..++.. -+||||||+||+|||+
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~---------------------------------------~~~~ilad~~GlGKT~ 71 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKL---------------------------------------GFGICLADDMGLGKTL 71 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHT---------------------------------------TCCEEECCCTTSCHHH
T ss_pred ChhhhccchHHHHHHHHHHHHHhhC---------------------------------------CCCEEEEeCCCCcHHH
Confidence 4478999999999999999763211 1489999999999999
Q ss_pred HHHHHHHhh------CCCcccCCccccccceec
Q 001098 240 TALSLILKT------QGTLADPPDGVKIIWCTH 266 (1158)
Q Consensus 240 ~~LalI~~~------~~~~~~~P~~~~~~W~~~ 266 (1158)
++|++|... .+.++++|.+++.||..+
T Consensus 72 ~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e 104 (500)
T 1z63_A 72 QTIAVFSDAKKENELTPSLVICPLSVLKNWEEE 104 (500)
T ss_dssp HHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEccHHHHHHHHHH
Confidence 999998753 467899999999999955
No 89
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.70 E-value=7.8e-08 Score=104.68 Aligned_cols=129 Identities=14% Similarity=0.117 Sum_probs=82.1
Q ss_pred CcccchHHHHHHHHh---------cCCEEEEECc-ccHHHHHHHHHhhcCCCCeEEEEecCCCC---cccccccCCCCEE
Q 001098 598 RLALCEPLDSVRLYL---------SRATLIVVPS-YLVDHWKTQIQQHVRPGQLHLFVWTDHKK---PSAHSLAWDYDVV 664 (1158)
Q Consensus 598 ~mGLGKTlqaiall~---------s~~tLIVvP~-sLl~qW~~Ei~k~~~~~~l~v~v~~g~~~---~~~~~l~~~~DVV 664 (1158)
..|.|||+..+..++ ...+|||+|. .|..||.+++.+++....+++..+.+... .........+||+
T Consensus 74 ~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 153 (245)
T 3dkp_A 74 PTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDIL 153 (245)
T ss_dssp CTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEE
T ss_pred CCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEE
Confidence 599999987544322 1369999996 58899999999998654566665544211 1111223478999
Q ss_pred EeechhhhhhhhcCCCCCcccccceEEEEccccccCCCc--hHHHHHH-HHHHc--ccCeEEEEeCCC
Q 001098 665 ITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSL--NLTNKLQ-MAISL--TASNRWLLTGTP 727 (1158)
Q Consensus 665 ItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~--s~t~~~~-~~~~L--~a~~RwlLTGTP 727 (1158)
|+|++.+....... ...+.--.+.+||+||||.+.... ....... .+..+ .....+++|||+
T Consensus 154 v~Tp~~l~~~l~~~-~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 154 VTTPNRLIYLLKQD-PPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp EECHHHHHHHHHSS-SCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSC
T ss_pred EECHHHHHHHHHhC-CCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccC
Confidence 99999997654422 112333457899999999985411 1122222 22222 245689999998
No 90
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.69 E-value=5.8e-08 Score=121.05 Aligned_cols=110 Identities=17% Similarity=0.113 Sum_probs=98.7
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEEC
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLME 1068 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~D 1068 (1158)
..+.++|||+......+.|.+.|...|++...++|.++..+|.++++.|.++ .+.||++|.+.+.|+|+..+++||++|
T Consensus 437 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g-~~~VLvaT~~l~~GlDip~v~lVI~~d 515 (664)
T 1c4o_A 437 ARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLG-HYDCLVGINLLREGLDIPEVSLVAILD 515 (664)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTT-SCSEEEESCCCCTTCCCTTEEEEEETT
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcC-CceEEEccChhhcCccCCCCCEEEEeC
Confidence 3678999999999999999999999999999999999999999999999865 578999999999999999999999999
Q ss_pred C-----CCCcChHHHHHhcccccCCCCcEEEEEEEeCCC
Q 001098 1069 P-----IWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102 (1158)
Q Consensus 1069 p-----~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~T 1102 (1158)
. ++++....|++||+.|.|. -.++.|+...+
T Consensus 516 ~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 516 ADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp TTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred CcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 8 8899999999999999863 24555666554
No 91
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.67 E-value=8.1e-08 Score=119.69 Aligned_cols=110 Identities=20% Similarity=0.157 Sum_probs=98.9
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEEC
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLME 1068 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~D 1068 (1158)
..+.++|||+......+.|.+.|...|++...++|.++..+|.++++.|.++ .+.||++|...+.|+|+..+++||++|
T Consensus 443 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g-~~~VLVaT~~l~~GlDip~v~lVi~~d 521 (661)
T 2d7d_A 443 ERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLG-KYDVLVGINLLREGLDIPEVSLVAILD 521 (661)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHT-SCSEEEESCCCSTTCCCTTEEEEEETT
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcC-CeEEEEecchhhCCcccCCCCEEEEeC
Confidence 4678999999999999999999999999999999999999999999999875 578999999999999999999999999
Q ss_pred C-----CCCcChHHHHHhcccccCCCCcEEEEEEEeCCC
Q 001098 1069 P-----IWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102 (1158)
Q Consensus 1069 p-----~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~T 1102 (1158)
. ++++....|++||++|. ++-.++.|+...+
T Consensus 522 ~d~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 522 ADKEGFLRSERSLIQTIGRAARN---AEGRVIMYADKIT 557 (661)
T ss_dssp TTCCTTTTSHHHHHHHHHTTTTS---TTCEEEEECSSCC
T ss_pred cccccCCCCHHHHHHHhCcccCC---CCCEEEEEEeCCC
Confidence 8 88999999999999997 2344556676664
No 92
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.62 E-value=1.3e-07 Score=104.22 Aligned_cols=152 Identities=16% Similarity=0.074 Sum_probs=96.0
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh------------cCCEEEEECc-ccHHHH
Q 001098 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL------------SRATLIVVPS-YLVDHW 628 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~------------s~~tLIVvP~-sLl~qW 628 (1158)
++++|...+-..++. .+.|+.- ..|.|||+.++..++ ...+|||+|. .|+.||
T Consensus 77 ~~~~Q~~~i~~~~~~----------~~~lv~a----~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~ 142 (262)
T 3ly5_A 77 MTEIQHKSIRPLLEG----------RDLLAAA----KTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQT 142 (262)
T ss_dssp CCHHHHHHHHHHHHT----------CCCEECC----CTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHHhCC----------CcEEEEc----cCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHH
Confidence 568888776444332 2334433 599999987544322 2469999996 688999
Q ss_pred HHHHHhhcCCCCeEEEEecCCCCcc--cccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHH
Q 001098 629 KTQIQQHVRPGQLHLFVWTDHKKPS--AHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLT 706 (1158)
Q Consensus 629 ~~Ei~k~~~~~~l~v~v~~g~~~~~--~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t 706 (1158)
.+++.+++......+..+.|..... ...+....+|+|+|.+.+......... +.--.+.+||+||||++-...-..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~--~~~~~l~~lViDEah~l~~~~~~~ 220 (262)
T 3ly5_A 143 FGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPG--FMYKNLQCLVIDEADRILDVGFEE 220 (262)
T ss_dssp HHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTT--CCCTTCCEEEECSHHHHHHTTCHH
T ss_pred HHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCC--cccccCCEEEEcChHHHhhhhHHH
Confidence 9999999865455665555543322 222334689999999988755432221 222346889999999976532112
Q ss_pred HHHHHHHHcc-cCeEEEEeCCCCC
Q 001098 707 NKLQMAISLT-ASNRWLLTGTPTP 729 (1158)
Q Consensus 707 ~~~~~~~~L~-a~~RwlLTGTPiq 729 (1158)
........+. ....+++|||+..
T Consensus 221 ~l~~i~~~~~~~~q~l~~SAT~~~ 244 (262)
T 3ly5_A 221 ELKQIIKLLPTRRQTMLFSATQTR 244 (262)
T ss_dssp HHHHHHHHSCSSSEEEEECSSCCH
T ss_pred HHHHHHHhCCCCCeEEEEEecCCH
Confidence 2222333443 4567999999864
No 93
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.55 E-value=1.2e-07 Score=103.22 Aligned_cols=149 Identities=13% Similarity=0.059 Sum_probs=93.9
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh-------------cCCEEEEECc-ccHHH
Q 001098 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL-------------SRATLIVVPS-YLVDH 627 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~-------------s~~tLIVvP~-sLl~q 627 (1158)
+.++|...+-..+.. .+.++.- ..|.|||+..+..+. ...+|||||. .|..|
T Consensus 52 ~~~~Q~~~i~~~~~g----------~~~l~~a----pTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q 117 (242)
T 3fe2_A 52 PTAIQAQGWPVALSG----------LDMVGVA----QTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQ 117 (242)
T ss_dssp CCHHHHHHHHHHHHT----------CCEEEEE----CTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHHhCC----------CCEEEEC----CCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHH
Confidence 567888776443322 2344443 599999987543321 2358999996 58899
Q ss_pred HHHHHHhhcCCCCeEEEEecCCCCcc--cccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchH
Q 001098 628 WKTQIQQHVRPGQLHLFVWTDHKKPS--AHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNL 705 (1158)
Q Consensus 628 W~~Ei~k~~~~~~l~v~v~~g~~~~~--~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~ 705 (1158)
|.+++.++.....+++..+.|..... ...+...+||+|+|.+.+....... .+..-.+.+||+||||.+-+..-.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~---~~~~~~~~~lViDEah~l~~~~~~ 194 (242)
T 3fe2_A 118 VQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG---KTNLRRTTYLVLDEADRMLDMGFE 194 (242)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT---SCCCTTCCEEEETTHHHHHHTTCH
T ss_pred HHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC---CCCcccccEEEEeCHHHHhhhCcH
Confidence 99999998654346666666544322 2233346899999999987654322 222345678999999997653221
Q ss_pred HHHHHHHHHc-ccCeEEEEeCCC
Q 001098 706 TNKLQMAISL-TASNRWLLTGTP 727 (1158)
Q Consensus 706 t~~~~~~~~L-~a~~RwlLTGTP 727 (1158)
......+..+ .....+++|||+
T Consensus 195 ~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 195 PQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp HHHHHHHTTSCSSCEEEEEESCC
T ss_pred HHHHHHHHhCCccceEEEEEeec
Confidence 2222233334 345678899996
No 94
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.20 E-value=1.2e-05 Score=90.29 Aligned_cols=129 Identities=16% Similarity=0.027 Sum_probs=80.6
Q ss_pred CcccchHHHHHHHHhc--------CCEEEEECc-ccHHHHHHHHHhhcCC-CCeEEEEecCCCCcccccccCCCCEEEee
Q 001098 598 RLALCEPLDSVRLYLS--------RATLIVVPS-YLVDHWKTQIQQHVRP-GQLHLFVWTDHKKPSAHSLAWDYDVVITT 667 (1158)
Q Consensus 598 ~mGLGKTlqaiall~s--------~~tLIVvP~-sLl~qW~~Ei~k~~~~-~~l~v~v~~g~~~~~~~~l~~~~DVVItT 667 (1158)
..|.|||+..+--++. ..+|||+|. .|..|+.+++.++... ..+.+....+........ ....+|+|+|
T Consensus 139 ~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~IlV~T 217 (300)
T 3fmo_B 139 QSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-KISEQIVIGT 217 (300)
T ss_dssp CTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-CCCCSEEEEC
T ss_pred CCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-cCCCCEEEEC
Confidence 5999999875432221 269999996 4889999998887642 235666655543322222 3378999999
Q ss_pred chhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHH-Hcc-cCeEEEEeCCCCC
Q 001098 668 FNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLT-ASNRWLLTGTPTP 729 (1158)
Q Consensus 668 Y~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~-~L~-a~~RwlLTGTPiq 729 (1158)
.+.|...+... ..+.--...+||+||||++-...........+. .+. ....+++|||+..
T Consensus 218 P~~l~~~l~~~--~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 218 PGTVLDWCSKL--KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED 279 (300)
T ss_dssp HHHHHHHHTTT--CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCH
T ss_pred HHHHHHHHHhc--CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCH
Confidence 99987554322 222233567899999999764212222222232 333 3457889999854
No 95
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.19 E-value=7.5e-07 Score=115.72 Aligned_cols=67 Identities=25% Similarity=0.326 Sum_probs=55.9
Q ss_pred cCCCcccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchh
Q 001098 159 IMPCMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKT 238 (1158)
Q Consensus 159 ~~p~l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKT 238 (1158)
.+.+.+.+|+|||.+++.||+.+. ..|+||||+||+|||
T Consensus 146 ~l~~~~~~LrpyQ~eav~~~l~~~-----------------------------------------~~~~LLad~tGlGKT 184 (968)
T 3dmq_A 146 GLRGQRTSLIPHQLNIAHDVGRRH-----------------------------------------APRVLLADEVGLGKT 184 (968)
T ss_dssp SSSCCSSCCCHHHHHHHHHHHHSS-----------------------------------------SCEEEECCCTTSCHH
T ss_pred cccCCCCCCcHHHHHHHHHHHHhc-----------------------------------------CCCEEEECCCCCcHH
Confidence 344678899999999999998722 137899999999999
Q ss_pred HHHHHHHHhh------CCCcccCCccccccceec
Q 001098 239 ITALSLILKT------QGTLADPPDGVKIIWCTH 266 (1158)
Q Consensus 239 l~~LalI~~~------~~~~~~~P~~~~~~W~~~ 266 (1158)
++++++|... ++.++++|.+++.||..+
T Consensus 185 i~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E 218 (968)
T 3dmq_A 185 IEAGMILHQQLLSGAAERVLIIVPETLQHQWLVE 218 (968)
T ss_dssp HHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHH
Confidence 9999998642 368899999999999954
No 96
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.06 E-value=0.00013 Score=90.64 Aligned_cols=133 Identities=15% Similarity=0.206 Sum_probs=81.8
Q ss_pred CcccchHHHHHH-HHh----cCCEEEEECccc-H---HHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCCCEEEeec
Q 001098 598 RLALCEPLDSVR-LYL----SRATLIVVPSYL-V---DHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTF 668 (1158)
Q Consensus 598 ~mGLGKTlqaia-ll~----s~~tLIVvP~sL-l---~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY 668 (1158)
..|-|||+.+.- +++ ...++||+|.-- . .+|...+-++++ +++.+..|.............||++.|.
T Consensus 100 kTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lG---Lsv~~i~Gg~~~~~r~~ay~~DIvyGTp 176 (997)
T 2ipc_A 100 KTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLG---LSVGVIQHASTPAERRKAYLADVTYVTN 176 (997)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTT---CCEEECCTTCCHHHHHHHHTSSEEEEEH
T ss_pred cCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcC---CeEEEEeCCCCHHHHHHHcCCCEEEECc
Confidence 579999986533 322 357999999864 3 458888888775 7777666544433333344789999998
Q ss_pred hhhhhhhhc-C---CCCCcccc---cceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCCccchhhhhHH
Q 001098 669 NRLSAEWGR-R---KKSPMMQV---HWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQP 741 (1158)
Q Consensus 669 ~~L~~e~~~-~---~~~~L~~~---~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~s 741 (1158)
..|..++-. . ....+..- ...++|+||+|.+--. .+..-+++|| |++... .-..++++
T Consensus 177 grlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiD-------------eartPLIISg-p~~~~~-~lY~~~~~ 241 (997)
T 2ipc_A 177 SELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILID-------------EARTPLIISG-PAEKAT-DLYYKMAE 241 (997)
T ss_dssp HHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTS-------------STTSCEEEEE-SCSSCH-HHHHHHHH
T ss_pred hhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHh-------------CCCCCeeeeC-CCccch-HHHHHHHH
Confidence 877422211 1 11223333 6789999999965421 2333489999 888761 11234555
Q ss_pred HhhhcCC
Q 001098 742 MLKFLHE 748 (1158)
Q Consensus 742 Ll~FL~p 748 (1158)
++.-|..
T Consensus 242 ~i~~L~~ 248 (997)
T 2ipc_A 242 IAKKLER 248 (997)
T ss_dssp HHHHSCC
T ss_pred HHHHhhh
Confidence 5555543
No 97
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=97.50 E-value=3.3e-05 Score=91.45 Aligned_cols=58 Identities=16% Similarity=0.104 Sum_probs=49.7
Q ss_pred cCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHHH
Q 001098 165 LKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSL 244 (1158)
Q Consensus 165 ~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~Lal 244 (1158)
.+|+|||++++.|++. .++||+++||+|||++++++
T Consensus 8 ~~l~~~Q~~~i~~~~~--------------------------------------------~~~ll~~~tG~GKT~~~~~~ 43 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE--------------------------------------------TNCLIVLPTGLGKTLIAMMI 43 (494)
T ss_dssp HCCCHHHHHHHHHGGG--------------------------------------------SCEEEECCTTSCHHHHHHHH
T ss_pred CCccHHHHHHHHHHhh--------------------------------------------CCEEEEcCCCCCHHHHHHHH
Confidence 4799999999999976 16899999999999999999
Q ss_pred HHhh-----CCCcccCCc-cccccceec
Q 001098 245 ILKT-----QGTLADPPD-GVKIIWCTH 266 (1158)
Q Consensus 245 I~~~-----~~~~~~~P~-~~~~~W~~~ 266 (1158)
|+.. ...++++|. .+..||..+
T Consensus 44 ~~~~~~~~~~~~liv~P~~~L~~q~~~~ 71 (494)
T 1wp9_A 44 AEYRLTKYGGKVLMLAPTKPLVLQHAES 71 (494)
T ss_dssp HHHHHHHSCSCEEEECSSHHHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEECCHHHHHHHHHH
Confidence 8753 567788997 889999954
No 98
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.39 E-value=0.00027 Score=86.17 Aligned_cols=102 Identities=14% Similarity=0.115 Sum_probs=69.4
Q ss_pred CcccchHHHHHHHH--hcCCEEEEECcc-cHHHHHHHHHhhcCCCCeEEEEecCCCCc----------------------
Q 001098 598 RLALCEPLDSVRLY--LSRATLIVVPSY-LVDHWKTQIQQHVRPGQLHLFVWTDHKKP---------------------- 652 (1158)
Q Consensus 598 ~mGLGKTlqaiall--~s~~tLIVvP~s-Ll~qW~~Ei~k~~~~~~l~v~v~~g~~~~---------------------- 652 (1158)
..|.|||+..+.-. ...++||++|.. +..|+.+|+.+......+++.+..|....
T Consensus 30 ~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~ 109 (551)
T 3crv_A 30 PTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKG 109 (551)
T ss_dssp CTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTT
T ss_pred CCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCcc
Confidence 59999998876543 347899999965 88999999998754334666665542110
Q ss_pred ------------c-------------------cccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCC
Q 001098 653 ------------S-------------------AHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS 701 (1158)
Q Consensus 653 ------------~-------------------~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn 701 (1158)
. ........||||++|..|.......... .......||+||||++-+
T Consensus 110 ~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~--~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 110 SIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFID--IDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSC--CCSTTEEEEETTGGGGGG
T ss_pred ccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcC--CCcCCeEEEEecccchHH
Confidence 0 0112346899999999998653222111 223667899999999986
No 99
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.30 E-value=0.00038 Score=84.68 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=54.0
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCccc----CCEE
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSF----VTRV 1064 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~----An~V 1064 (1158)
..+.++|||......++.+.+.|.. ++ +.+.|.. .+|.+++++|+++..+.+.+++....+|+|+.. +..|
T Consensus 382 ~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 382 NSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGKYLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp TCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSCCEEEEEC---------------CEEEE
T ss_pred hCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCCeEEEEEecCceecceecCCCcccccEE
Confidence 3557899999999999988888864 33 3445543 468899999988544322336788999999996 7889
Q ss_pred EEECCCCCcChHHHHHhcc
Q 001098 1065 FLMEPIWDRSMEEQVISRA 1083 (1158)
Q Consensus 1065 I~~Dp~WNP~~e~QAigRa 1083 (1158)
|++..|+-+..+..-..|.
T Consensus 457 ii~~lPf~~~~d~~~~~r~ 475 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRI 475 (540)
T ss_dssp EEESCCCCCTTSHHHHHHH
T ss_pred EEECCCCCCCCCHHHHHHH
Confidence 9999998766444333333
No 100
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.13 E-value=0.0011 Score=71.24 Aligned_cols=125 Identities=10% Similarity=-0.018 Sum_probs=68.9
Q ss_pred CcccchHHHHHHHHhc----------CCEEEEECcc-cHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCCCEEEe
Q 001098 598 RLALCEPLDSVRLYLS----------RATLIVVPSY-LVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVIT 666 (1158)
Q Consensus 598 ~mGLGKTlqaiall~s----------~~tLIVvP~s-Ll~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVIt 666 (1158)
..|.|||......+.. ...++++|.. +..|..+.+.+.++...-....+ +..... .......+|+++
T Consensus 84 ~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~-~~~~~~-~~~~~~~~Ivv~ 161 (235)
T 3llm_A 84 ATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGY-SVRFES-ILPRPHASIMFC 161 (235)
T ss_dssp CTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEE-EETTEE-ECCCSSSEEEEE
T ss_pred CCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEE-eechhh-ccCCCCCeEEEE
Confidence 4999999755443321 2678888975 55677777777664321000111 101110 011135789999
Q ss_pred echhhhhhhhcCCCCCcccccceEEEEccccccC-CCchHHHHHHHH-HHcccCeEEEEeCCCCCC
Q 001098 667 TFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLG-SSLNLTNKLQMA-ISLTASNRWLLTGTPTPN 730 (1158)
Q Consensus 667 TY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ik-n~~s~t~~~~~~-~~L~a~~RwlLTGTPiqN 730 (1158)
|.+.+...+.. .+ -+.+.||+||||... +........+.+ ........+++|||+-.+
T Consensus 162 Tpg~l~~~l~~----~l--~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~ 221 (235)
T 3llm_A 162 TVGVLLRKLEA----GI--RGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTS 221 (235)
T ss_dssp EHHHHHHHHHH----CC--TTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCH
T ss_pred CHHHHHHHHHh----hh--cCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHH
Confidence 99888765432 12 355789999999731 111000111222 223445689999997543
No 101
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.83 E-value=0.00041 Score=82.68 Aligned_cols=61 Identities=26% Similarity=0.280 Sum_probs=50.9
Q ss_pred cccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHH
Q 001098 163 MKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITAL 242 (1158)
Q Consensus 163 l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~L 242 (1158)
...+|+|||.+++.+++.. ..+||+++||+|||++++
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~-------------------------------------------~~~ll~~~TGsGKT~~~l 126 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVD-------------------------------------------KRGCIVLPTGSGKTHVAM 126 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTT-------------------------------------------TEEEEECCTTSCHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhc-------------------------------------------CCEEEEeCCCCCHHHHHH
Confidence 3458999999999988651 148999999999999999
Q ss_pred HHHHhh-CCCcccCCc-cccccceec
Q 001098 243 SLILKT-QGTLADPPD-GVKIIWCTH 266 (1158)
Q Consensus 243 alI~~~-~~~~~~~P~-~~~~~W~~~ 266 (1158)
.+|... ...++++|. .++.||..+
T Consensus 127 ~~i~~~~~~~Lvl~P~~~L~~Q~~~~ 152 (472)
T 2fwr_A 127 AAINELSTPTLIVVPTLALAEQWKER 152 (472)
T ss_dssp HHHHHHCSCEEEEESSHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEECCHHHHHHHHHH
Confidence 998864 567788888 899999965
No 102
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.71 E-value=0.00052 Score=76.05 Aligned_cols=59 Identities=14% Similarity=0.000 Sum_probs=47.6
Q ss_pred cCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHHH
Q 001098 165 LKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSL 244 (1158)
Q Consensus 165 ~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~Lal 244 (1158)
.+|+|||.+++.+++.. ..|||+++||.|||++++++
T Consensus 112 ~~l~~~Q~~ai~~~l~~-------------------------------------------~~~ll~~~tGsGKT~~~~~~ 148 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN-------------------------------------------RRRILNLPTSAGRSLIQALL 148 (282)
T ss_dssp CCCCHHHHHHHHHHHHH-------------------------------------------SEEEECCCTTSCHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhc-------------------------------------------CCeEEEcCCCCCcHHHHHHH
Confidence 48999999999988761 14799999999999999888
Q ss_pred HHhh-----CCCcccCCc-cccccceec
Q 001098 245 ILKT-----QGTLADPPD-GVKIIWCTH 266 (1158)
Q Consensus 245 I~~~-----~~~~~~~P~-~~~~~W~~~ 266 (1158)
+... ...++++|. .+..||..+
T Consensus 149 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 176 (282)
T 1rif_A 149 ARYYLENYEGKILIIVPTTALTTQMADD 176 (282)
T ss_dssp HHHHHHHCSSEEEEECSSHHHHHHHHHH
T ss_pred HHHHHHcCCCeEEEEECCHHHHHHHHHH
Confidence 7742 257778886 678899854
No 103
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.23 E-value=0.002 Score=69.48 Aligned_cols=61 Identities=26% Similarity=0.280 Sum_probs=48.7
Q ss_pred cccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHH
Q 001098 163 MKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITAL 242 (1158)
Q Consensus 163 l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~L 242 (1158)
...+|+|||++++.+++.. ..+|++.++|.|||++++
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~-------------------------------------------~~~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVD-------------------------------------------KRGCIVLPTGSGKTHVAM 126 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTT-------------------------------------------SEEEEEESSSTTHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhC-------------------------------------------CCEEEEeCCCCCHHHHHH
Confidence 4558999999999987551 138999999999999999
Q ss_pred HHHHhh-CCCcccCCc-cccccceec
Q 001098 243 SLILKT-QGTLADPPD-GVKIIWCTH 266 (1158)
Q Consensus 243 alI~~~-~~~~~~~P~-~~~~~W~~~ 266 (1158)
+++... ...++++|. .++.||...
T Consensus 127 ~~~~~~~~~~liv~P~~~L~~q~~~~ 152 (237)
T 2fz4_A 127 AAINELSTPTLIVVPTLALAEQWKER 152 (237)
T ss_dssp HHHHHSCSCEEEEESSHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeCCHHHHHHHHHH
Confidence 988764 456677777 777899865
No 104
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=95.75 E-value=0.0052 Score=76.91 Aligned_cols=59 Identities=19% Similarity=0.116 Sum_probs=47.0
Q ss_pred ccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHH
Q 001098 164 KLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALS 243 (1158)
Q Consensus 164 ~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~La 243 (1158)
..+|+|||.+++.|++.. +.+|+++++|.|||++.+.
T Consensus 5 ~~~l~~~Q~~~i~~il~g-------------------------------------------~~~ll~~~TGsGKTl~~~~ 41 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALEG-------------------------------------------KNIIICLPTGCGKTRVAVY 41 (699)
T ss_dssp --CCCHHHHHHHHHHHSS-------------------------------------------CCEEECCCTTSCHHHHHHH
T ss_pred CCCccHHHHHHHHHHHhC-------------------------------------------CCEEEEcCCCCcHHHHHHH
Confidence 357999999999999761 2579999999999999988
Q ss_pred HHHhh----------CCCcccCCcc-ccccc-ee
Q 001098 244 LILKT----------QGTLADPPDG-VKIIW-CT 265 (1158)
Q Consensus 244 lI~~~----------~~~~~~~P~~-~~~~W-~~ 265 (1158)
.|+.. ...++++|.. ++.|| ..
T Consensus 42 ~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~ 75 (699)
T 4gl2_A 42 IAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRK 75 (699)
T ss_dssp HHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHH
T ss_pred HHHHHHHhccccCCCCeEEEEECCHHHHHHHHHH
Confidence 87642 5678888875 77888 65
No 105
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=95.66 E-value=0.0041 Score=76.31 Aligned_cols=79 Identities=13% Similarity=0.121 Sum_probs=44.3
Q ss_pred CCCEEEeechhhhhhhhc-CCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCCccchhhh
Q 001098 660 DYDVVITTFNRLSAEWGR-RKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSH 738 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~-~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~d 738 (1158)
.++|+|+||+.+...... .....+....|++||+||||++.+... ......+..+....+++|||||..+. ..+
T Consensus 274 ~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~-~~~~~il~~~~~~~~l~lTATP~~~~----~~~ 348 (590)
T 3h1t_A 274 SREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDN-SNWREILEYFEPAFQIGMTATPLRED----NRD 348 (590)
T ss_dssp SCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHSTTSEEEEEESSCSCTT----THH
T ss_pred CCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccch-HHHHHHHHhCCcceEEEecccccccc----chh
Confidence 446777788777643210 001223345689999999999986421 11123445667788999999999988 556
Q ss_pred hHHHh
Q 001098 739 LQPML 743 (1158)
Q Consensus 739 L~sLl 743 (1158)
++.++
T Consensus 349 ~~~~f 353 (590)
T 3h1t_A 349 TYRYF 353 (590)
T ss_dssp HHHHS
T ss_pred HHHHc
Confidence 55544
No 106
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=95.60 E-value=0.0057 Score=76.53 Aligned_cols=87 Identities=14% Similarity=0.115 Sum_probs=55.1
Q ss_pred CCCEEEeechhhhhhhhcCCCCCc-ccccceEEEEccccccCCCchHHHHHHHHHH--c-----ccCeEEEEeCCCCCCC
Q 001098 660 DYDVVITTFNRLSAEWGRRKKSPM-MQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS--L-----TASNRWLLTGTPTPNT 731 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L-~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~--L-----~a~~RwlLTGTPiqN~ 731 (1158)
.++|+|+|+++|...... ..+ ....|.+||+||||.+.+............. + ...++++|||||..++
T Consensus 111 ~~~Iiv~Tp~~L~~~l~~---~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~ 187 (696)
T 2ykg_A 111 NNDIIILTPQILVNNLKK---GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 187 (696)
T ss_dssp TCSEEEECHHHHHHHHHT---TSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSS
T ss_pred CCCEEEECHHHHHHHHhc---CcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCc
Confidence 468889999988766542 222 3457899999999999987643332211111 1 4578999999999765
Q ss_pred cc---chhhhhHHHhhhcCCC
Q 001098 732 PN---SQLSHLQPMLKFLHEE 749 (1158)
Q Consensus 732 ~~---~~l~dL~sLl~FL~p~ 749 (1158)
.. ..+.++..++..++..
T Consensus 188 ~~~~~~~~~~i~~~~~~l~~~ 208 (696)
T 2ykg_A 188 AKTTDEALDYICKLCASLDAS 208 (696)
T ss_dssp CCSHHHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhcCCc
Confidence 21 1244555565555543
No 107
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=95.57 E-value=0.0042 Score=74.68 Aligned_cols=60 Identities=13% Similarity=0.030 Sum_probs=47.9
Q ss_pred ccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHH
Q 001098 164 KLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALS 243 (1158)
Q Consensus 164 ~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~La 243 (1158)
..+|+|||.+++.+++.. ..++||++||.|||++++.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~-------------------------------------------~~~ll~~~tGsGKT~~~~~ 147 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVN-------------------------------------------RRRILNLPTSAGRSLIQAL 147 (510)
T ss_dssp EECCCHHHHHHHHHHHHH-------------------------------------------SEEEEECCSTTTHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc-------------------------------------------CCcEEEeCCCCCHHHHHHH
Confidence 458999999999998761 2589999999999999988
Q ss_pred HHHh----hC-CCcccCCc-cccccceec
Q 001098 244 LILK----TQ-GTLADPPD-GVKIIWCTH 266 (1158)
Q Consensus 244 lI~~----~~-~~~~~~P~-~~~~~W~~~ 266 (1158)
++.. .+ ..++++|. .+..||...
T Consensus 148 ~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~ 176 (510)
T 2oca_A 148 LARYYLENYEGKILIIVPTTALTTQMADD 176 (510)
T ss_dssp HHHHHHHHCSSEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEEEECcHHHHHHHHHH
Confidence 7764 22 56778886 677889854
No 108
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.34 E-value=0.0085 Score=72.30 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=45.9
Q ss_pred CCCEEEeechhhhhhhhcCCCCCc-ccccceEEEEccccccCCCchHHHHHHHHHHc-------ccCeEEEEeCCCCCCC
Q 001098 660 DYDVVITTFNRLSAEWGRRKKSPM-MQVHWLRVMLDEGHTLGSSLNLTNKLQMAISL-------TASNRWLLTGTPTPNT 731 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L-~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L-------~a~~RwlLTGTPiqN~ 731 (1158)
.++|+|+|++++...+... .+ ..-.|++||+||||++.+..+........... ...++++|||||.+++
T Consensus 102 ~~~i~v~T~~~l~~~~~~~---~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~ 178 (555)
T 3tbk_A 102 DNDIIILTPQILVNNLNNG---AIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGD 178 (555)
T ss_dssp HCSEEEECHHHHHHHHHTS---SSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTT
T ss_pred CCCEEEECHHHHHHHHhcC---cccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCcccCc
Confidence 4578888888887665422 22 34568899999999999875423222111111 2357999999999987
No 109
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=94.95 E-value=0.012 Score=71.13 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=45.2
Q ss_pred CCCEEEeechhhhhhhhcCCCCCc-ccccceEEEEccccccCCCchHHHHHHHHHH------cccCeEEEEeCCCCCCC
Q 001098 660 DYDVVITTFNRLSAEWGRRKKSPM-MQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS------LTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L-~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~------L~a~~RwlLTGTPiqN~ 731 (1158)
.+||+|+|++.+...+.. ..+ ..-.|++||+||||++.+............. -...++++|||||.+++
T Consensus 105 ~~~i~v~T~~~l~~~~~~---~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~ 180 (556)
T 4a2p_A 105 DSDIIVVTPQILVNSFED---GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGN 180 (556)
T ss_dssp HCSEEEECHHHHHHHHHS---SSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCCCTT
T ss_pred CCCEEEECHHHHHHHHHh---CcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcccCCCCeEEEEeCCcccCc
Confidence 457888888888766532 222 3456889999999999986542222111111 12367999999999877
No 110
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=94.72 E-value=0.037 Score=67.08 Aligned_cols=99 Identities=18% Similarity=0.079 Sum_probs=59.5
Q ss_pred CcccchHHHHHHHH--hcCCEEEEECc-ccHHHHHHHHHhhcCCCCeEEEEecCCCC-----------------------
Q 001098 598 RLALCEPLDSVRLY--LSRATLIVVPS-YLVDHWKTQIQQHVRPGQLHLFVWTDHKK----------------------- 651 (1158)
Q Consensus 598 ~mGLGKTlqaiall--~s~~tLIVvP~-sLl~qW~~Ei~k~~~~~~l~v~v~~g~~~----------------------- 651 (1158)
..|.|||+..+... ..+++||++|. .+..||.+|+.+. + +++.+..|...
T Consensus 34 ~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l-~---~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~ 109 (540)
T 2vl7_A 34 KPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLL-G---LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKD 109 (540)
T ss_dssp CTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGG-T---CCEEEC----------------------------
T ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhc-C---CcEEEecCCccccCCchhcccccccCCCCCCchh
Confidence 58999997665432 34788888896 4778999888874 2 23333322110
Q ss_pred --------------------------cccccccCCCCEEEeechhhhhhhhcCCCCC--c--ccccceEEEEccccccC
Q 001098 652 --------------------------PSAHSLAWDYDVVITTFNRLSAEWGRRKKSP--M--MQVHWLRVMLDEGHTLG 700 (1158)
Q Consensus 652 --------------------------~~~~~l~~~~DVVItTY~~L~~e~~~~~~~~--L--~~~~w~rVIlDEAH~ik 700 (1158)
....+.....||||++|+.+......+.... . .......||+||||++-
T Consensus 110 ~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 110 KIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp -----------------------------CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred cccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 0011223467999999999976432211110 0 12457899999999994
No 111
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=94.53 E-value=0.017 Score=74.82 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=43.8
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHH------cccCeEEEEeCCCCCCC
Q 001098 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS------LTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~------L~a~~RwlLTGTPiqN~ 731 (1158)
.+||+|+||++|...+..... ...-.|++||+||||++.+............. ....++++|||||.+++
T Consensus 346 ~~~IvI~Tp~~L~~~l~~~~~--~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~ 421 (936)
T 4a2w_A 346 DSDIIVVTPQILVNSFEDGTL--TSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGN 421 (936)
T ss_dssp HCSEEEECHHHHHHHHHSSSC--CCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTT
T ss_pred CCCEEEecHHHHHHHHHcCcc--ccccCCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCcCeEEEecCCccccc
Confidence 457888888888765542211 12346788999999999886542222211111 12266899999998876
No 112
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.28 E-value=0.017 Score=60.32 Aligned_cols=61 Identities=18% Similarity=0.113 Sum_probs=45.9
Q ss_pred CcccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHH
Q 001098 162 CMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITA 241 (1158)
Q Consensus 162 ~l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~ 241 (1158)
....+|+|||.+++.+++.. +.+|++..+|.|||+.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~-------------------------------------------~~~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEG-------------------------------------------KNIIICLPTGSGKTRVA 65 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTT-------------------------------------------CCEEEECSCHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHhcC-------------------------------------------CCEEEEcCCCCCHHHHH
Confidence 44568999999999988651 25799999999999999
Q ss_pred HHHHHh----------hCCCcccCCc-ccccc-cee
Q 001098 242 LSLILK----------TQGTLADPPD-GVKII-WCT 265 (1158)
Q Consensus 242 LalI~~----------~~~~~~~~P~-~~~~~-W~~ 265 (1158)
+.+++. ....++++|. .+..| |..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~ 101 (216)
T 3b6e_A 66 VYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRK 101 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHH
Confidence 888764 2356667777 44566 653
No 113
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=94.10 E-value=0.024 Score=72.09 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=46.6
Q ss_pred CCCEEEeechhhhhhhhcCCCCCc-ccccceEEEEccccccCCCchHHHHHHHHHH------cccCeEEEEeCCCCCCC
Q 001098 660 DYDVVITTFNRLSAEWGRRKKSPM-MQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS------LTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L-~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~------L~a~~RwlLTGTPiqN~ 731 (1158)
.+||+|+|++.+...+.. ..+ ..-.|++||+||||++.+............. ....++++|||||.+++
T Consensus 346 ~~~Ivv~Tp~~l~~~l~~---~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~ 421 (797)
T 4a2q_A 346 DSDIIVVTPQILVNSFED---GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGN 421 (797)
T ss_dssp TCSEEEECHHHHHHHHHS---SSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTT
T ss_pred CCCEEEEchHHHHHHHHh---ccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCCCeEEEEcCCccccc
Confidence 568999999998866542 222 3456899999999999986542222111111 12367999999999876
No 114
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=93.88 E-value=0.033 Score=62.31 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=41.5
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccC-eEEEEeCCCCCC
Q 001098 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTAS-NRWLLTGTPTPN 730 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~-~RwlLTGTPiqN 730 (1158)
.++|+|+|++.+...+.. ..+....|++||+||||.+.+..-..........+... ..+++||||...
T Consensus 105 ~~~i~v~T~~~l~~~~~~---~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~ 173 (337)
T 2z0m_A 105 NADIVVATPGRLLDLWSK---GVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEE 173 (337)
T ss_dssp TCSEEEECHHHHHHHHHT---TSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred CCCEEEECHHHHHHHHHc---CCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCHH
Confidence 357888888887755432 22334568899999999987543222222233334433 455789999554
No 115
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=93.80 E-value=0.021 Score=70.29 Aligned_cols=77 Identities=13% Similarity=0.204 Sum_probs=47.9
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe--CccccccCcc--cCCEEEE
Q 001098 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD--GSASLGLDLS--FVTRVFL 1066 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s--~agg~GLNLt--~An~VI~ 1066 (1158)
+.+++||......++.+.+.|. .+..- ...+++..+|.+++++|+ + .--||+++ .+-.+|+|+. ....||+
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~-~~~vL~~v~~gsf~EGiD~~g~~l~~viI 522 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-R-DHGTIFAVSGGRLSEGINFPGNELEMIIL 522 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-T-SCCEEEEETTSCC--------CCCCEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-c-CCcEEEEEecCceeccccCCCCceEEEEE
Confidence 4567777777777777777776 23333 333444568999999999 3 34577776 3779999999 5788888
Q ss_pred ECCCCC
Q 001098 1067 MEPIWD 1072 (1158)
Q Consensus 1067 ~Dp~WN 1072 (1158)
.-.|+-
T Consensus 523 ~~lPfp 528 (620)
T 4a15_A 523 AGLPFP 528 (620)
T ss_dssp SSCCCC
T ss_pred EcCCCC
Confidence 877764
No 116
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.53 E-value=0.038 Score=63.32 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=44.0
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHH-c-ccCeEEEEeCCCCCC
Q 001098 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS-L-TASNRWLLTGTPTPN 730 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~-L-~a~~RwlLTGTPiqN 730 (1158)
.++|+|+|++.+...... ..+....+++||+||||.+.+..........+.. + .....+++||||..+
T Consensus 128 ~~~iiv~T~~~l~~~~~~---~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 197 (391)
T 1xti_A 128 CPHIVVGTPGRILALARN---KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKE 197 (391)
T ss_dssp CCSEEEECHHHHHHHHHT---TSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCST
T ss_pred CCCEEEECHHHHHHHHHc---CCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHH
Confidence 457888888888755432 2233457889999999999864322233333322 2 255689999999765
No 117
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.76 E-value=0.33 Score=60.10 Aligned_cols=144 Identities=14% Similarity=0.081 Sum_probs=85.5
Q ss_pred cchhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh-----cCCEEEEECccc-HHHHHHHHHh
Q 001098 561 FHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL-----SRATLIVVPSYL-VDHWKTQIQQ 634 (1158)
Q Consensus 561 ~~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~-----s~~tLIVvP~sL-l~qW~~Ei~k 634 (1158)
-+.+.|...+...+...-. .|+.- ..|.|||.+.+.++. ..++||++|++. +++-.+-+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~---------~lI~G----PPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKEL---------AIIHG----PPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSE---------EEEEC----CTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCc---------eEEEC----CCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHh
Confidence 3678898888666543211 12222 489999988777653 378999999874 6777666665
Q ss_pred hcCCCCeEEEEecCCCCcc-------------------------------------------------------------
Q 001098 635 HVRPGQLHLFVWTDHKKPS------------------------------------------------------------- 653 (1158)
Q Consensus 635 ~~~~~~l~v~v~~g~~~~~------------------------------------------------------------- 653 (1158)
.. .+++-.....+..
T Consensus 256 ~~----~~ilRlG~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 331 (646)
T 4b3f_X 256 CK----QRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKER 331 (646)
T ss_dssp TT----CCEEECSCCSSCCHHHHTTBHHHHHTTTTCSSTHHHHHHHHTTSSTTTTC------CCSSHHHHHHHHHHHHHH
T ss_pred cC----CceEEecchhhhhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 42 2222222111000
Q ss_pred ----cccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCC
Q 001098 654 ----AHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTP 729 (1158)
Q Consensus 654 ----~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiq 729 (1158)
..+....+++|++|....... .....+....|+.||+|||..+--+ ..+..+....+++|-|=|-|
T Consensus 332 ~~~~~~~~l~~~~vv~~t~~~a~~~---~~~~~~~~~~Fd~vIIDEAsQ~~e~-------~~lipL~~~~~~ILVGD~~Q 401 (646)
T 4b3f_X 332 EEAAMLESLTSANVVLATNTGASAD---GPLKLLPESYFDVVVIDECAQALEA-------SCWIPLLKARKCILAGDHKQ 401 (646)
T ss_dssp HHHHHHHHHHHCSEEEEETTTTCSS---SGGGGSCTTCCSEEEETTGGGSCHH-------HHTTTGGGSSEEEEEECTTS
T ss_pred HHHHHHHHHhhcceeeeehhhhhhh---hHHHhhhhccCCEEEEcCccccchH-------HHHhhccccceEEEcCCccc
Confidence 000122467888887665422 1123455678999999999765421 22334445568999999888
Q ss_pred CC
Q 001098 730 NT 731 (1158)
Q Consensus 730 N~ 731 (1158)
-.
T Consensus 402 Lp 403 (646)
T 4b3f_X 402 LP 403 (646)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 118
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.74 E-value=0.21 Score=58.37 Aligned_cols=103 Identities=11% Similarity=0.055 Sum_probs=66.7
Q ss_pred CcccchHHHHHHHHhcCCEEEEECcc-cHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCCCEEEeechhhhhhhh
Q 001098 598 RLALCEPLDSVRLYLSRATLIVVPSY-LVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWG 676 (1158)
Q Consensus 598 ~mGLGKTlqaiall~s~~tLIVvP~s-Ll~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~~L~~e~~ 676 (1158)
.-|.|||-....++..++.||++|.. +...|.+.+.+.-.. . .-..-+.|++.+...
T Consensus 169 ~aGsGKTt~I~~~~~~~~~lVlTpT~~aa~~l~~kl~~~~~~------------~--------~~~~~V~T~dsfL~~-- 226 (446)
T 3vkw_A 169 VPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANASGII------------V--------ATKDNVRTVDSFLMN-- 226 (446)
T ss_dssp CTTSCHHHHHHHHCCTTTCEEEESCHHHHHHHHHHHTTTSCC------------C--------CCTTTEEEHHHHHHT--
T ss_pred CCCCCHHHHHHHHhccCCeEEEeCCHHHHHHHHHHhhhcCcc------------c--------cccceEEEeHHhhcC--
Confidence 37999998888877668999999965 778899888653100 0 111225566655421
Q ss_pred cCCCCCcccccceEEEEccccccCCCchHHHHHHHH-HHcccCeEEEEeCCCCCCC
Q 001098 677 RRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMA-ISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 677 ~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~-~~L~a~~RwlLTGTPiqN~ 731 (1158)
........++.||+||+.++-. ....++ ..+++ .+++|.|=|-|-.
T Consensus 227 ---~~~~~~~~~d~liiDE~sm~~~-----~~l~~l~~~~~~-~~vilvGD~~Qlp 273 (446)
T 3vkw_A 227 ---YGKGARCQFKRLFIDEGLMLHT-----GCVNFLVEMSLC-DIAYVYGDTQQIP 273 (446)
T ss_dssp ---TTSSCCCCCSEEEEETGGGSCH-----HHHHHHHHHTTC-SEEEEEECTTSCC
T ss_pred ---CCCCCCCcCCEEEEeCcccCCH-----HHHHHHHHhCCC-CEEEEecCccccc
Confidence 1222234589999999998853 222223 33444 8999999998865
No 119
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=92.10 E-value=0.084 Score=59.63 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=43.2
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHc-ccCeEEEEeCCCCCCC
Q 001098 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISL-TASNRWLLTGTPTPNT 731 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L-~a~~RwlLTGTPiqN~ 731 (1158)
..+|+|+|++.+...... ..+....|++||+||||.+.+.............+ ...+.+++||||..+.
T Consensus 123 ~~~iiv~T~~~l~~~~~~---~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~ 192 (367)
T 1hv8_A 123 NANIVVGTPGRILDHINR---GTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREI 192 (367)
T ss_dssp TCSEEEECHHHHHHHHHT---TCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHH
T ss_pred CCCEEEecHHHHHHHHHc---CCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHH
Confidence 356788888877655432 22233467899999999997654222222222233 4566789999996653
No 120
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=91.79 E-value=0.088 Score=60.61 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=41.1
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHH-Hc-ccCeEEEEeCCCCCC
Q 001098 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SL-TASNRWLLTGTPTPN 730 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~-~L-~a~~RwlLTGTPiqN 730 (1158)
.++|+|+|++.+...... ..+....+++||+||||.+.+.. .......+. .+ .....+++|||+..+
T Consensus 139 ~~~Ivv~T~~~l~~~~~~---~~~~~~~~~~vIiDEaH~~~~~~-~~~~~~~i~~~~~~~~~~i~lSAT~~~~ 207 (400)
T 1s2m_A 139 TVHILVGTPGRVLDLASR---KVADLSDCSLFIMDEADKMLSRD-FKTIIEQILSFLPPTHQSLLFSATFPLT 207 (400)
T ss_dssp CCSEEEECHHHHHHHHHT---TCSCCTTCCEEEEESHHHHSSHH-HHHHHHHHHTTSCSSCEEEEEESCCCHH
T ss_pred CCCEEEEchHHHHHHHHh---CCcccccCCEEEEeCchHhhhhc-hHHHHHHHHHhCCcCceEEEEEecCCHH
Confidence 457888888877644321 12233467899999999987642 122222222 22 345689999998543
No 121
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=91.69 E-value=0.073 Score=60.97 Aligned_cols=66 Identities=21% Similarity=0.116 Sum_probs=41.0
Q ss_pred CCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHc-ccCeEEEEeCCCCC
Q 001098 661 YDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISL-TASNRWLLTGTPTP 729 (1158)
Q Consensus 661 ~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L-~a~~RwlLTGTPiq 729 (1158)
++|+|+|++.+...... ..+....|++||+||||.+.+..-..........+ .....+++||||..
T Consensus 139 ~~i~v~T~~~l~~~~~~---~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 205 (394)
T 1fuu_A 139 AQIVVGTPGRVFDNIQR---RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN 205 (394)
T ss_dssp CSEEEECHHHHHHHHHT---TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCH
T ss_pred CCEEEECHHHHHHHHHh---CCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCH
Confidence 46778887777654332 22334578899999999985433222222233333 34568999999854
No 122
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.40 E-value=0.12 Score=54.25 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=29.8
Q ss_pred CceeccCCCCchhHHHHHHHHhh-------CCCcccCCc-ccccccee
Q 001098 226 GGMFCDEPGLGKTITALSLILKT-------QGTLADPPD-GVKIIWCT 265 (1158)
Q Consensus 226 GGILaDeMGLGKTl~~LalI~~~-------~~~~~~~P~-~~~~~W~~ 265 (1158)
..|++..+|.|||+..+..++.. ...++++|. .+..||..
T Consensus 53 ~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 100 (220)
T 1t6n_A 53 DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 100 (220)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHH
T ss_pred CEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHH
Confidence 47999999999999988877754 145567776 66677764
No 123
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=91.34 E-value=0.12 Score=44.63 Aligned_cols=31 Identities=19% Similarity=0.610 Sum_probs=24.4
Q ss_pred CCceeeccchhhhhhcccccccC---CCccceec
Q 001098 432 NETWVQCDACHKWRKLLDASVAD---ATAAWFCS 462 (1158)
Q Consensus 432 ~~~wvqc~~c~kwr~~~~~~~~~---~~~~w~c~ 462 (1158)
+..|||||.|..|-+..+..... .+..|+|.
T Consensus 28 g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~ 61 (72)
T 1wee_A 28 GERMLACDGCGVWHHTRCIGINNADALPSKFLCF 61 (72)
T ss_dssp SSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCH
T ss_pred CCcEEECCCCCCccCCeeeccCccccCCCcEECC
Confidence 34799999999999998866532 36788884
No 124
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=91.23 E-value=0.13 Score=53.23 Aligned_cols=57 Identities=21% Similarity=0.158 Sum_probs=41.7
Q ss_pred CChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHHHH
Q 001098 166 KLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245 (1158)
Q Consensus 166 ~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~LalI 245 (1158)
+++|||++++.+++.. +..+++..+|.|||+..+..+
T Consensus 23 ~~~~~Q~~~i~~~~~~-------------------------------------------~~~li~~~TGsGKT~~~~~~~ 59 (207)
T 2gxq_A 23 TPTPIQAAALPLALEG-------------------------------------------KDLIGQARTGTGKTLAFALPI 59 (207)
T ss_dssp SCCHHHHHHHHHHHTT-------------------------------------------CCEEEECCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCC-------------------------------------------CCEEEECCCCChHHHHHHHHH
Confidence 5999999999988761 147899999999999976666
Q ss_pred HhhC----------CCcccCCc-ccccccee
Q 001098 246 LKTQ----------GTLADPPD-GVKIIWCT 265 (1158)
Q Consensus 246 ~~~~----------~~~~~~P~-~~~~~W~~ 265 (1158)
+... ..++++|. .+..||..
T Consensus 60 ~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~ 90 (207)
T 2gxq_A 60 AERLAPSQERGRKPRALVLTPTRELALQVAS 90 (207)
T ss_dssp HHHCCCCCCTTCCCSEEEECSSHHHHHHHHH
T ss_pred HHHHhhccccCCCCcEEEEECCHHHHHHHHH
Confidence 5431 24456666 56677764
No 125
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=91.22 E-value=0.11 Score=60.08 Aligned_cols=67 Identities=18% Similarity=0.062 Sum_probs=41.9
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHc-ccCeEEEEeCCCCC
Q 001098 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISL-TASNRWLLTGTPTP 729 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L-~a~~RwlLTGTPiq 729 (1158)
..+|+|+|++.+...... ..+....+++||+||||.+.+.............+ .....+++||||..
T Consensus 155 ~~~ivv~Tp~~l~~~l~~---~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 222 (410)
T 2j0s_A 155 GQHVVAGTPGRVFDMIRR---RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPH 222 (410)
T ss_dssp CCSEEEECHHHHHHHHHT---TSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCH
T ss_pred CCCEEEcCHHHHHHHHHh---CCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCH
Confidence 346778887777654332 22334568899999999987654322222233333 34678999999854
No 126
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.91 E-value=0.56 Score=49.30 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=33.3
Q ss_pred cceEEEEccccccCCCchHHHHHHHHHHc-ccCeEEEEeCC--CCCCCccchhhhhHHHhhhc
Q 001098 687 HWLRVMLDEGHTLGSSLNLTNKLQMAISL-TASNRWLLTGT--PTPNTPNSQLSHLQPMLKFL 746 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s~t~~~~~~~~L-~a~~RwlLTGT--PiqN~~~~~l~dL~sLl~FL 746 (1158)
.++.|||||||.+.... - ..+..+ .....+++||- =+++.++....+|..+.+.+
T Consensus 101 ~~dvViIDEaQF~~~~~--V---~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~V 158 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDI--V---EVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHV 158 (214)
T ss_dssp SCCEEEECCGGGSCTTH--H---HHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEE
T ss_pred CCCEEEEECcccCCHHH--H---HHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccE
Confidence 48999999999986421 2 223332 33567888885 45555443345565555544
No 127
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.85 E-value=0.11 Score=43.61 Aligned_cols=31 Identities=26% Similarity=0.678 Sum_probs=24.4
Q ss_pred CCceeeccchhhhhhcccccccCC----Cccceec
Q 001098 432 NETWVQCDACHKWRKLLDASVADA----TAAWFCS 462 (1158)
Q Consensus 432 ~~~wvqc~~c~kwr~~~~~~~~~~----~~~w~c~ 462 (1158)
++.|||||.|..|-+..+...... .+.|+|.
T Consensus 19 ~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 53 (64)
T 1we9_A 19 DEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCP 53 (64)
T ss_dssp SSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCH
T ss_pred CCCEEEccCCCCCCCccccCcChhHhcCCCcEECC
Confidence 578999999999999988665322 4678884
No 128
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=89.66 E-value=0.2 Score=53.12 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHHHH
Q 001098 166 KLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245 (1158)
Q Consensus 166 ~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~LalI 245 (1158)
.++|||++++.+++.. +..|++..+|.|||+..+..+
T Consensus 47 ~~~~~Q~~~i~~~~~~-------------------------------------------~~~li~a~TGsGKT~~~~~~~ 83 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQG-------------------------------------------KDVLGAAKTGSGKTLAFLVPV 83 (236)
T ss_dssp BCCHHHHHHHHHHHTT-------------------------------------------CCEEEECCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC-------------------------------------------CCEEEEeCCCCcHHHHHHHHH
Confidence 5899999999998751 146899999999999876655
Q ss_pred Hhh-----------CCCcccCCc-ccccccee
Q 001098 246 LKT-----------QGTLADPPD-GVKIIWCT 265 (1158)
Q Consensus 246 ~~~-----------~~~~~~~P~-~~~~~W~~ 265 (1158)
+.. ...++++|. .+..||..
T Consensus 84 l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 115 (236)
T 2pl3_A 84 LEALYRLQWTSTDGLGVLIISPTRELAYQTFE 115 (236)
T ss_dssp HHHHHHTTCCGGGCCCEEEECSSHHHHHHHHH
T ss_pred HHHHHhhcccccCCceEEEEeCCHHHHHHHHH
Confidence 432 234566676 56666764
No 129
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.58 E-value=1.2 Score=54.84 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=40.8
Q ss_pred CCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCC
Q 001098 659 WDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 659 ~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
..++||++|...+.. ..+....|+.||+|||...-.+. .++..+....+++|-|=|-|-.
T Consensus 318 ~~~~vI~~T~~~~~~-------~~l~~~~fd~viIDEAsQ~~e~~------~li~l~~~~~~~ilvGD~~QL~ 377 (624)
T 2gk6_A 318 MNADVICCTCVGAGD-------PRLAKMQFRSILIDESTQATEPE------CMVPVVLGAKQLILVGDHCQLG 377 (624)
T ss_dssp HTCSEEEEETGGGGC-------GGGTTCCCSEEEETTGGGSCHHH------HHHHHTTTBSEEEEEECTTSCC
T ss_pred hcCCEEEEcChhhcc-------hhhhcCCCCEEEEecccccCcHH------HHHHHHhcCCeEEEecChhccC
Confidence 367899988766541 23456789999999997665421 1222233456899999998865
No 130
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=89.22 E-value=0.14 Score=43.59 Aligned_cols=32 Identities=22% Similarity=0.717 Sum_probs=25.7
Q ss_pred CCCceeeccchhhhhhcccccccC--CCccceec
Q 001098 431 CNETWVQCDACHKWRKLLDASVAD--ATAAWFCS 462 (1158)
Q Consensus 431 ~~~~wvqc~~c~kwr~~~~~~~~~--~~~~w~c~ 462 (1158)
.++.+||||.|..|-+..+..... .++.|+|.
T Consensus 29 ~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~ 62 (68)
T 3o70_A 29 AGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 62 (68)
T ss_dssp TTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCH
T ss_pred CCCCEEECCCCCccccccccCcCcccCCCcEECC
Confidence 356899999999999999876533 46789984
No 131
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=88.70 E-value=0.23 Score=56.68 Aligned_cols=67 Identities=16% Similarity=0.103 Sum_probs=41.6
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHH-c-ccCeEEEEeCCCCC
Q 001098 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS-L-TASNRWLLTGTPTP 729 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~-L-~a~~RwlLTGTPiq 729 (1158)
..+|+|+|++.+...... ..+..-.+++||+||||.+.+..........+.. + .....+++||||..
T Consensus 121 ~~~iiv~T~~~l~~~~~~---~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 189 (395)
T 3pey_A 121 NAQVIVGTPGTVLDLMRR---KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFAD 189 (395)
T ss_dssp CCSEEEECHHHHHHHHHT---TCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCH
T ss_pred CCCEEEEcHHHHHHHHHc---CCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCH
Confidence 457888888877654331 2233446789999999998753322333333332 2 23568899999843
No 132
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=88.37 E-value=1.3 Score=45.76 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=34.9
Q ss_pred cceEEEEccccccCCCchHHHHHHHHHHc-ccCeEEEEeCC--CCCCCccchhhhhHHHhhhc
Q 001098 687 HWLRVMLDEGHTLGSSLNLTNKLQMAISL-TASNRWLLTGT--PTPNTPNSQLSHLQPMLKFL 746 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s~t~~~~~~~~L-~a~~RwlLTGT--PiqN~~~~~l~dL~sLl~FL 746 (1158)
.++.||+||||.+... . ...+..+ .....++++|- .+++.+.....+|..+.+.+
T Consensus 81 ~~dvViIDEaqfl~~~----~-v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V 138 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDE----I-VEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFV 138 (191)
T ss_dssp TCSEEEECSGGGSCTH----H-HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEE
T ss_pred cCCEEEEECCCCCCHH----H-HHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccE
Confidence 5899999999998531 1 2233332 33557888885 66666554466666666655
No 133
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=88.18 E-value=1.7 Score=54.91 Aligned_cols=59 Identities=15% Similarity=0.154 Sum_probs=40.6
Q ss_pred CCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCC
Q 001098 659 WDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 659 ~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
...|||++|...+.. ..+.. .|+.||+|||+.+-.+ .. .+..+....+++|-|=|-|-.
T Consensus 497 ~~a~VI~~T~~~~~~-------~~L~~-~fd~viIDEA~q~~e~----~~--li~l~~~~~~lilvGD~~QL~ 555 (802)
T 2xzl_A 497 NKADVVCCTCVGAGD-------KRLDT-KFRTVLIDESTQASEP----EC--LIPIVKGAKQVILVGDHQQLG 555 (802)
T ss_dssp HTCSEEEEETTGGGC-------TTCCS-CCSEEEETTGGGSCHH----HH--HHHHTTTBSEEEEEECTTSCC
T ss_pred ccCCEEEechhhcCh-------HHHhc-cCCEEEEECccccchH----HH--HHHHHhCCCEEEEEeCccccC
Confidence 367899998876641 22444 8999999999887532 11 222334457899999998865
No 134
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.01 E-value=0.2 Score=44.02 Aligned_cols=31 Identities=16% Similarity=0.554 Sum_probs=24.7
Q ss_pred CCceeeccchhhhhhcccccccC----CCccceec
Q 001098 432 NETWVQCDACHKWRKLLDASVAD----ATAAWFCS 462 (1158)
Q Consensus 432 ~~~wvqc~~c~kwr~~~~~~~~~----~~~~w~c~ 462 (1158)
+..|||||.|..|-+..+..... ..+.|+|.
T Consensus 24 ~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 58 (79)
T 1wep_A 24 NHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCP 58 (79)
T ss_dssp SSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCT
T ss_pred CCceEEcCCCCCcEEeeecCcccccccCCCeEECC
Confidence 68999999999999988865422 24789994
No 135
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=87.94 E-value=1.6 Score=55.16 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=40.8
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCC
Q 001098 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
.++||++|...+.. ..+....|+.||+|||..+-.+ . ..+..+....+++|-|=|-|-.
T Consensus 495 ~a~VI~~T~~~~~~-------~~l~~~~fd~viIDEAsQ~~e~----~--~li~l~~~~~~~ilvGD~~QLp 553 (800)
T 2wjy_A 495 NADVICCTCVGAGD-------PRLAKMQFRSILIDESTQATEP----E--CMVPVVLGAKQLILVGDHCQLG 553 (800)
T ss_dssp HCSEEEEETGGGGC-------TTTTTCCCSEEEETTGGGSCHH----H--HHHHHTTTBSEEEEEECTTSCC
T ss_pred cCCEEEEchhhhCC-------hhhhcCCCCEEEEECCCCCCcH----H--HHHHHHhcCCeEEEecccccCC
Confidence 57899988776541 2355678999999999776532 1 1223334457899999998865
No 136
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=87.89 E-value=0.18 Score=40.45 Aligned_cols=32 Identities=22% Similarity=0.717 Sum_probs=25.3
Q ss_pred CCCceeeccchhhhhhcccccccC--CCccceec
Q 001098 431 CNETWVQCDACHKWRKLLDASVAD--ATAAWFCS 462 (1158)
Q Consensus 431 ~~~~wvqc~~c~kwr~~~~~~~~~--~~~~w~c~ 462 (1158)
++..+||||.|..|-+........ .++.|+|.
T Consensus 14 ~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~ 47 (52)
T 3o7a_A 14 AGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 47 (52)
T ss_dssp TTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCH
T ss_pred CCCCEEEcCCCCccccccccCCCcccCCCcEECc
Confidence 356999999999999999876532 36788884
No 137
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=87.60 E-value=0.34 Score=52.01 Aligned_cols=38 Identities=32% Similarity=0.427 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHHHH
Q 001098 166 KLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245 (1158)
Q Consensus 166 ~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~LalI 245 (1158)
.++|||.+++..++.. +..|++...|.|||+..+..+
T Consensus 45 ~~~~~Q~~~i~~i~~~-------------------------------------------~~~l~~a~TGsGKT~~~~~~~ 81 (253)
T 1wrb_A 45 RPTPIQKNAIPAILEH-------------------------------------------RDIMACAQTGSGKTAAFLIPI 81 (253)
T ss_dssp SCCHHHHHHHHHHHTT-------------------------------------------CCEEEECCTTSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC-------------------------------------------CCEEEECCCCChHHHHHHHHH
Confidence 6999999999988761 146888999999999877666
Q ss_pred H
Q 001098 246 L 246 (1158)
Q Consensus 246 ~ 246 (1158)
+
T Consensus 82 l 82 (253)
T 1wrb_A 82 I 82 (253)
T ss_dssp H
T ss_pred H
Confidence 5
No 138
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=86.89 E-value=0.16 Score=40.84 Aligned_cols=32 Identities=28% Similarity=0.768 Sum_probs=24.4
Q ss_pred CCCceeecc-chhhhhhcccccccCC---Cccceec
Q 001098 431 CNETWVQCD-ACHKWRKLLDASVADA---TAAWFCS 462 (1158)
Q Consensus 431 ~~~~wvqc~-~c~kwr~~~~~~~~~~---~~~w~c~ 462 (1158)
.++.||||| .|.+|-+......... ...|+|.
T Consensus 14 ~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~ 49 (52)
T 2kgg_A 14 DKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICI 49 (52)
T ss_dssp TTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCS
T ss_pred CCCcEEEeCCCCCccCcccccCCCccccCCCCEECC
Confidence 467899999 8999999988655321 3678884
No 139
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=86.55 E-value=0.37 Score=55.46 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=43.1
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHc-ccCeEEEEeCCCCCC
Q 001098 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISL-TASNRWLLTGTPTPN 730 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L-~a~~RwlLTGTPiqN 730 (1158)
.++|+|+|++.+...... ..+..-.+.+||+||||.+.+..-.......+..+ .....+++||||..+
T Consensus 159 ~~~iiv~T~~~l~~~l~~---~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 227 (414)
T 3eiq_A 159 APHIIVGTPGRVFDMLNR---RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSD 227 (414)
T ss_dssp CCSEEEECHHHHHHHHHH---TSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHH
T ss_pred CCCEEEECHHHHHHHHHc---CCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHH
Confidence 567888888887655432 22333457899999999986543222222333344 345678999998543
No 140
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=86.32 E-value=0.16 Score=64.02 Aligned_cols=46 Identities=33% Similarity=0.789 Sum_probs=35.8
Q ss_pred Cceeecc--chhhhhhccccccc--CCCccceeccCCCc-----cCcCCCCCccc
Q 001098 433 ETWVQCD--ACHKWRKLLDASVA--DATAAWFCSMNSDP-----THQSCGDPEEA 478 (1158)
Q Consensus 433 ~~wvqc~--~c~kwr~~~~~~~~--~~~~~w~c~~n~~~-----~~~sC~~pEe~ 478 (1158)
..|+||- .|.|||+|+..... +..+..-|.|-++. ..+.|+.||+.
T Consensus 91 ~~~~~c~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 145 (776)
T 4gut_A 91 PYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKPETSDHCSLPEDL 145 (776)
T ss_dssp CCEEECCCTTTCCEEECCTTCCCCHHHHHHCCTTCCCC-------CCGGGSCCCH
T ss_pred cHhhhcCcccccchhhCCCcCCCChhhhheeeccCccCcccccccCCCCCCCccc
Confidence 4899999 99999999987663 33667888887544 36789999984
No 141
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=86.21 E-value=1.5 Score=53.28 Aligned_cols=103 Identities=12% Similarity=0.132 Sum_probs=60.4
Q ss_pred CcccchHHHHHHHHh-----cCCEEEEECcccHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCCCEEEeechhhh
Q 001098 598 RLALCEPLDSVRLYL-----SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLS 672 (1158)
Q Consensus 598 ~mGLGKTlqaiall~-----s~~tLIVvP~sLl~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~~L~ 672 (1158)
+-|.|||..+.+++. ..++++++|....-....|.. +. .. ...+.+. .++. . .+.
T Consensus 212 ~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~---~~---~a--------~Tih~ll-~~~~--~---~~~ 271 (574)
T 3e1s_A 212 GPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT---GR---TA--------STVHRLL-GYGP--Q---GFR 271 (574)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH---TS---CE--------EEHHHHT-TEET--T---EES
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh---cc---cH--------HHHHHHH-cCCc--c---hhh
Confidence 589999977666543 368999999887665554422 11 01 1111111 0000 0 011
Q ss_pred hhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCC
Q 001098 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 673 ~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
...-....++.||+||+|++... .....+..+....+++|.|-|-|..
T Consensus 272 -------~~~~~~~~~dvlIIDEasml~~~----~~~~Ll~~~~~~~~lilvGD~~QL~ 319 (574)
T 3e1s_A 272 -------HNHLEPAPYDLLIVDEVSMMGDA----LMLSLLAAVPPGARVLLVGDTDQLP 319 (574)
T ss_dssp -------CSSSSCCSCSEEEECCGGGCCHH----HHHHHHTTSCTTCEEEEEECTTSCC
T ss_pred -------hhhcccccCCEEEEcCccCCCHH----HHHHHHHhCcCCCEEEEEecccccC
Confidence 01112347899999999999742 2223445566778999999999975
No 142
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=86.09 E-value=0.37 Score=50.45 Aligned_cols=57 Identities=18% Similarity=0.108 Sum_probs=41.0
Q ss_pred CChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHHHH
Q 001098 166 KLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245 (1158)
Q Consensus 166 ~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~LalI 245 (1158)
+++|||++++..++.. +..|++...|.|||+..+..+
T Consensus 26 ~~~~~Q~~~i~~~~~~-------------------------------------------~~~lv~a~TGsGKT~~~~~~~ 62 (219)
T 1q0u_A 26 KPTEIQERIIPGALRG-------------------------------------------ESMVGQSQTGTGKTHAYLLPI 62 (219)
T ss_dssp SCCHHHHHHHHHHHHT-------------------------------------------CCEEEECCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC-------------------------------------------CCEEEECCCCChHHHHHHHHH
Confidence 5899999999988761 146889999999999876666
Q ss_pred Hhh-------CCCcccCCc-ccccccee
Q 001098 246 LKT-------QGTLADPPD-GVKIIWCT 265 (1158)
Q Consensus 246 ~~~-------~~~~~~~P~-~~~~~W~~ 265 (1158)
+.. ...++++|. .+..||..
T Consensus 63 l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 90 (219)
T 1q0u_A 63 MEKIKPERAEVQAVITAPTRELATQIYH 90 (219)
T ss_dssp HHHCCTTSCSCCEEEECSSHHHHHHHHH
T ss_pred HHHHHhCcCCceEEEEcCcHHHHHHHHH
Confidence 543 234556666 45566654
No 143
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.96 E-value=0.21 Score=43.49 Aligned_cols=31 Identities=19% Similarity=0.572 Sum_probs=24.2
Q ss_pred CCceeeccchhhhhhcccccccC--------CCccceec
Q 001098 432 NETWVQCDACHKWRKLLDASVAD--------ATAAWFCS 462 (1158)
Q Consensus 432 ~~~wvqc~~c~kwr~~~~~~~~~--------~~~~w~c~ 462 (1158)
++.|||||.|..|-+..+..... .+..|+|.
T Consensus 27 ~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~ 65 (76)
T 1wem_A 27 NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICP 65 (76)
T ss_dssp SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCH
T ss_pred CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECc
Confidence 46999999999999988865432 24689984
No 144
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=85.92 E-value=0.5 Score=49.52 Aligned_cols=57 Identities=21% Similarity=0.128 Sum_probs=39.9
Q ss_pred CChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHHHH
Q 001098 166 KLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245 (1158)
Q Consensus 166 ~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~LalI 245 (1158)
.++|||++++..++.. +..|++...|.|||+..+..+
T Consensus 36 ~~~~~Q~~~i~~~~~~-------------------------------------------~~~lv~~pTGsGKT~~~~~~~ 72 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEG-------------------------------------------HDVLAQAQSGTGKTGTFSIAA 72 (224)
T ss_dssp SCCHHHHHHHHHHHTT-------------------------------------------CCEEEECCTTSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhcC-------------------------------------------CCEEEECCCCCcHHHHHHHHH
Confidence 5999999999988651 146899999999999855444
Q ss_pred Hhh-------CCCcccCCc-ccccccee
Q 001098 246 LKT-------QGTLADPPD-GVKIIWCT 265 (1158)
Q Consensus 246 ~~~-------~~~~~~~P~-~~~~~W~~ 265 (1158)
+.. ...++++|. .+..||..
T Consensus 73 l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 100 (224)
T 1qde_A 73 LQRIDTSVKAPQALMLAPTRELALQIQK 100 (224)
T ss_dssp HHHCCTTCCSCCEEEECSSHHHHHHHHH
T ss_pred HHHHhccCCCceEEEEECCHHHHHHHHH
Confidence 421 234556666 45566664
No 145
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=85.72 E-value=0.51 Score=49.88 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=27.3
Q ss_pred CceeccCCCCchhHHHHHHHHhh-------CCCcccCCc-ccccccee
Q 001098 226 GGMFCDEPGLGKTITALSLILKT-------QGTLADPPD-GVKIIWCT 265 (1158)
Q Consensus 226 GGILaDeMGLGKTl~~LalI~~~-------~~~~~~~P~-~~~~~W~~ 265 (1158)
..|++..+|.|||+..+..++.. ...++++|. .+..||..
T Consensus 63 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 110 (230)
T 2oxc_A 63 DLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHS 110 (230)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHH
Confidence 36889999999999865544432 234567776 56677764
No 146
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=85.06 E-value=0.58 Score=42.85 Aligned_cols=32 Identities=16% Similarity=0.559 Sum_probs=25.7
Q ss_pred CCCceeeccchhhhhhccccccc--CCCccceec
Q 001098 431 CNETWVQCDACHKWRKLLDASVA--DATAAWFCS 462 (1158)
Q Consensus 431 ~~~~wvqc~~c~kwr~~~~~~~~--~~~~~w~c~ 462 (1158)
.++.+||||.|.+|-++.+...+ ..++.|||.
T Consensus 38 ~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~ 71 (98)
T 2lv9_A 38 DDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCE 71 (98)
T ss_dssp CSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCT
T ss_pred CCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECC
Confidence 46799999999999999986543 346689994
No 147
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=84.80 E-value=2 Score=45.53 Aligned_cols=38 Identities=8% Similarity=0.052 Sum_probs=23.8
Q ss_pred cccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCC
Q 001098 685 QVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGT 726 (1158)
Q Consensus 685 ~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGT 726 (1158)
...+++||+||+|.+... .-.....+. +..-.++++|-
T Consensus 87 ~~~~dvViIDEaQ~l~~~--~ve~l~~L~--~~gi~Vil~Gl 124 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDR--ICEVANILA--ENGFVVIISGL 124 (223)
T ss_dssp CTTCCEEEECSGGGSCTH--HHHHHHHHH--HTTCEEEEECC
T ss_pred CCCCCEEEEecCccCcHH--HHHHHHHHH--hCCCeEEEEec
Confidence 346899999999998642 111222222 23567889996
No 148
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=84.62 E-value=0.42 Score=62.04 Aligned_cols=74 Identities=19% Similarity=0.146 Sum_probs=47.0
Q ss_pred ccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHH
Q 001098 164 KLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALS 243 (1158)
Q Consensus 164 ~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~La 243 (1158)
+..|+|||.+|+.+++.+-...... ..|. ...++|++...+|.|||++++.
T Consensus 269 ~~~~R~~Q~~AI~~il~~i~~~~~~--~~~~---------------------------~~~~~gli~~~TGSGKT~t~~~ 319 (1038)
T 2w00_A 269 LLVMRPYQIAATERILWKIKSSFTA--KNWS---------------------------KPESGGYIWHTTGSGKTLTSFK 319 (1038)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHH--TCCS---------------------------SGGGSEEEEECTTSSHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcccc--cccc---------------------------cCCCCEEEEecCCCCHHHHHHH
Confidence 4579999999999998732110000 0000 0114899999999999999876
Q ss_pred HHHhh------CCCcccCC-ccccccceec
Q 001098 244 LILKT------QGTLADPP-DGVKIIWCTH 266 (1158)
Q Consensus 244 lI~~~------~~~~~~~P-~~~~~~W~~~ 266 (1158)
++... ...++++| ..|..||...
T Consensus 320 l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 320 AARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp HHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred HHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 65321 13456677 6677788643
No 149
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=84.59 E-value=0.61 Score=50.10 Aligned_cols=57 Identities=23% Similarity=0.083 Sum_probs=41.0
Q ss_pred CChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHHHH
Q 001098 166 KLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245 (1158)
Q Consensus 166 ~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~LalI 245 (1158)
.++|||.+++..++.. +..|++...|.|||+..+..+
T Consensus 65 ~~~~~Q~~~i~~i~~~-------------------------------------------~~~lv~a~TGsGKT~~~~~~i 101 (249)
T 3ber_A 65 KPTKIQIEAIPLALQG-------------------------------------------RDIIGLAETGSGKTGAFALPI 101 (249)
T ss_dssp SCCHHHHHHHHHHHTT-------------------------------------------CCEEEECCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC-------------------------------------------CCEEEEcCCCCCchhHhHHHH
Confidence 6999999999988651 246888999999999877666
Q ss_pred Hhh-------CCCcccCCc-ccccccee
Q 001098 246 LKT-------QGTLADPPD-GVKIIWCT 265 (1158)
Q Consensus 246 ~~~-------~~~~~~~P~-~~~~~W~~ 265 (1158)
+.. ...++++|. .+..||..
T Consensus 102 l~~l~~~~~~~~~lil~Ptr~L~~q~~~ 129 (249)
T 3ber_A 102 LNALLETPQRLFALVLTPTRELAFQISE 129 (249)
T ss_dssp HHHHHHSCCSSCEEEECSSHHHHHHHHH
T ss_pred HHHHhcCCCCceEEEEeCCHHHHHHHHH
Confidence 532 125566776 45566764
No 150
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=84.55 E-value=1.7 Score=44.48 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=30.5
Q ss_pred cceEEEEccccccCCCchHHHHHHHHH-HcccCeEEEEeCC--CCCCCccchhhhhHHHhhhc
Q 001098 687 HWLRVMLDEGHTLGSSLNLTNKLQMAI-SLTASNRWLLTGT--PTPNTPNSQLSHLQPMLKFL 746 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s~t~~~~~~~-~L~a~~RwlLTGT--PiqN~~~~~l~dL~sLl~FL 746 (1158)
.++.||+||+|.+... .-. .+. .......+++||. ++++.+.+....|.++.+++
T Consensus 76 ~~dvviIDE~Q~~~~~--~~~---~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v 133 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPS--LFE---VVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTV 133 (184)
T ss_dssp TEEEEEECCGGGSCTT--HHH---HHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEE
T ss_pred CCCEEEEECcccCCHH--HHH---HHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhhe
Confidence 5789999999998421 122 222 1233667888887 33334322244455444433
No 151
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=82.65 E-value=0.32 Score=42.26 Aligned_cols=31 Identities=23% Similarity=0.607 Sum_probs=24.3
Q ss_pred CCceeeccchhhhhhcccccccCC----Cccceec
Q 001098 432 NETWVQCDACHKWRKLLDASVADA----TAAWFCS 462 (1158)
Q Consensus 432 ~~~wvqc~~c~kwr~~~~~~~~~~----~~~w~c~ 462 (1158)
+..|||||.|..|-+..+...... .+.|+|.
T Consensus 22 ~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~ 56 (75)
T 3kqi_A 22 TRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCP 56 (75)
T ss_dssp TSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCH
T ss_pred CCCEEEcCCCCCCEecccccccccccCCCCEEECC
Confidence 569999999999999988765332 3679984
No 152
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=81.81 E-value=2.5 Score=51.85 Aligned_cols=44 Identities=25% Similarity=0.269 Sum_probs=27.0
Q ss_pred cCCCCEEEeechhhhhhhhcCCC-CCc-ccccceEEEEccccccCC
Q 001098 658 AWDYDVVITTFNRLSAEWGRRKK-SPM-MQVHWLRVMLDEGHTLGS 701 (1158)
Q Consensus 658 ~~~~DVVItTY~~L~~e~~~~~~-~~L-~~~~w~rVIlDEAH~ikn 701 (1158)
....||||++|+.|-...-.... ..+ ....-..||+||||+|-+
T Consensus 173 ~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d 218 (620)
T 4a15_A 173 LPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPD 218 (620)
T ss_dssp GGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHH
T ss_pred hhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHH
Confidence 34789999999887643211000 000 123446899999999964
No 153
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=81.40 E-value=3.2 Score=44.01 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=32.8
Q ss_pred cceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCC--CCCCCccchhhhhHHHhhhc
Q 001098 687 HWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGT--PTPNTPNSQLSHLQPMLKFL 746 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGT--PiqN~~~~~l~dL~sLl~FL 746 (1158)
.++.|++||+|.+.. .-.....+.. ....+++||- =+++.++....+|..+.+.+
T Consensus 90 ~~dvViIDEaQF~~~---v~el~~~l~~--~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~V 146 (234)
T 2orv_A 90 GVAVIGIDEGQFFPD---IVEFCEAMAN--AGKTVIVAALDGTFQRKPFGAILNLVPLAESV 146 (234)
T ss_dssp TCSEEEESSGGGCTT---HHHHHHHHHH--TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEE
T ss_pred cCCEEEEEchhhhhh---HHHHHHHHHh--CCCEEEEEecccccccCCcccHHHHHHhcccE
Confidence 579999999999963 2222222222 4557888884 35555444445555555444
No 154
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=81.04 E-value=0.8 Score=48.63 Aligned_cols=39 Identities=23% Similarity=0.156 Sum_probs=26.3
Q ss_pred ceeccCCCCchhHHHHHHHHhh-------CCCcccCCc-ccccccee
Q 001098 227 GMFCDEPGLGKTITALSLILKT-------QGTLADPPD-GVKIIWCT 265 (1158)
Q Consensus 227 GILaDeMGLGKTl~~LalI~~~-------~~~~~~~P~-~~~~~W~~ 265 (1158)
.|++...|.|||+..+..++.. ...++++|. .+..||..
T Consensus 70 ~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 116 (237)
T 3bor_A 70 VIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQK 116 (237)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHH
Confidence 6888999999999977666643 134456665 45555653
No 155
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=80.95 E-value=0.8 Score=36.52 Aligned_cols=39 Identities=18% Similarity=0.464 Sum_probs=32.7
Q ss_pred CCCCCCCcHHHHHHHHhhcCCCcHHHHHHHhhhhhhccc
Q 001098 119 STGISDIADDIVISILTRLGPIDLVRIAATCRHLRCLAA 157 (1158)
Q Consensus 119 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 157 (1158)
...+.+||+|++..|+.+++..++.+++..|+.++....
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 456889999999999999999999999999998877554
No 156
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=80.94 E-value=1.8 Score=44.41 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=39.3
Q ss_pred CChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHHHH
Q 001098 166 KLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245 (1158)
Q Consensus 166 ~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~LalI 245 (1158)
.++|||++++..++.. +..+++..+|.|||+..+..+
T Consensus 25 ~~~~~Q~~~i~~~~~~-------------------------------------------~~~lv~apTGsGKT~~~~~~~ 61 (206)
T 1vec_A 25 KPSPIQEESIPIALSG-------------------------------------------RDILARAKNGTGKSGAYLIPL 61 (206)
T ss_dssp SCCHHHHHHHHHHHTT-------------------------------------------CCEEEECCSSSTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHccC-------------------------------------------CCEEEECCCCCchHHHHHHHH
Confidence 5999999999988651 246888999999999887666
Q ss_pred HhhC-------CCcccCCc-cccccce
Q 001098 246 LKTQ-------GTLADPPD-GVKIIWC 264 (1158)
Q Consensus 246 ~~~~-------~~~~~~P~-~~~~~W~ 264 (1158)
+... ..++++|. .+..||.
T Consensus 62 ~~~~~~~~~~~~~lil~Pt~~L~~q~~ 88 (206)
T 1vec_A 62 LERLDLKKDNIQAMVIVPTRELALQVS 88 (206)
T ss_dssp HHHCCTTSCSCCEEEECSCHHHHHHHH
T ss_pred HHHhcccCCCeeEEEEeCcHHHHHHHH
Confidence 6432 24455554 3445554
No 157
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=79.95 E-value=0.36 Score=40.71 Aligned_cols=33 Identities=24% Similarity=0.725 Sum_probs=24.5
Q ss_pred CCCCceeecc-chhhhhhcccccccC---------CCccceec
Q 001098 430 ACNETWVQCD-ACHKWRKLLDASVAD---------ATAAWFCS 462 (1158)
Q Consensus 430 ~~~~~wvqc~-~c~kwr~~~~~~~~~---------~~~~w~c~ 462 (1158)
..++.||||| .|.+|=+..+..... ....|+|.
T Consensus 19 ~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~ 61 (65)
T 2vpb_A 19 NDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCD 61 (65)
T ss_dssp CTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCH
T ss_pred CCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECc
Confidence 3477999999 999998887754421 33589984
No 158
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=77.40 E-value=7.5 Score=40.77 Aligned_cols=56 Identities=11% Similarity=0.155 Sum_probs=30.1
Q ss_pred cceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeC--CCCCCCccchhhhhHHHhhhc
Q 001098 687 HWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG--TPTPNTPNSQLSHLQPMLKFL 746 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTG--TPiqN~~~~~l~dL~sLl~FL 746 (1158)
..+.|++||||.+... .-.....+. ....++++.| |=+++.++.....|.++.+.+
T Consensus 101 ~~dvV~IDEaQFf~~~--~v~~l~~la--~~gi~Vi~~GLd~DF~~~~F~~~~~Ll~~Ad~v 158 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDE--IVSIVEKLS--ADGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQV 158 (219)
T ss_dssp TCSEEEECCGGGSCTH--HHHHHHHHH--HTTCEEEEEEESBCTTSCBCTTHHHHHHHCSEE
T ss_pred CCCEEEEechhcCCHH--HHHHHHHHH--HCCCEEEEeecccccccCCCccHHHHHHhcceE
Confidence 5789999999999852 122222221 2344555555 345555443344455444433
No 159
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.64 E-value=1.4 Score=38.41 Aligned_cols=32 Identities=22% Similarity=0.749 Sum_probs=25.5
Q ss_pred CCCceeecc--chhhhhhcccccccC--------CCccceec
Q 001098 431 CNETWVQCD--ACHKWRKLLDASVAD--------ATAAWFCS 462 (1158)
Q Consensus 431 ~~~~wvqc~--~c~kwr~~~~~~~~~--------~~~~w~c~ 462 (1158)
.+..||||| .|..|.+..+..... .+..|||.
T Consensus 26 ~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~ 67 (78)
T 1wew_A 26 ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCE 67 (78)
T ss_dssp CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCH
T ss_pred CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECC
Confidence 467999999 999999999876532 24689984
No 160
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=75.44 E-value=7.7 Score=40.01 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=30.1
Q ss_pred ceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeC--CCCCCCccchhhhhHHHhhh
Q 001098 688 WLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG--TPTPNTPNSQLSHLQPMLKF 745 (1158)
Q Consensus 688 w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTG--TPiqN~~~~~l~dL~sLl~F 745 (1158)
.+.|++||+|.++. +-.....+. .....++++| |=+++.+.....+|.++.+-
T Consensus 92 ~DvIlIDEaQFfk~---~ve~~~~L~--~~gk~VI~~GL~~DF~~~~F~~~~~Ll~~Ad~ 146 (195)
T 1w4r_A 92 VAVIGIDEGQFFPD---IVEFCEAMA--NAGKTVIVAALDGTFQRKPFGAILNLVPLAES 146 (195)
T ss_dssp CSEEEESSGGGCTT---HHHHHHHHH--HTTCEEEEEEESBCTTSSBCTTGGGGGGGCSE
T ss_pred CCEEEEEchhhhHH---HHHHHHHHH--HCCCeEEEEecccccccccchhHHHHHHhcCe
Confidence 58999999999942 233332222 4455777777 34555544334444444433
No 161
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=75.01 E-value=0.94 Score=39.19 Aligned_cols=32 Identities=22% Similarity=0.713 Sum_probs=23.7
Q ss_pred CCCceeeccchhhhhhcccccccC---CCccceec
Q 001098 431 CNETWVQCDACHKWRKLLDASVAD---ATAAWFCS 462 (1158)
Q Consensus 431 ~~~~wvqc~~c~kwr~~~~~~~~~---~~~~w~c~ 462 (1158)
.++.||+||.|..|-++.+...+. ....|||.
T Consensus 29 ~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~ 63 (75)
T 2k16_A 29 DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCP 63 (75)
T ss_dssp SSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCT
T ss_pred CCCCEEEcCCCCcccccccCCCCccCCCCCCEECh
Confidence 356899999999999887754322 23689994
No 162
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=74.99 E-value=3.4 Score=48.62 Aligned_cols=42 Identities=7% Similarity=-0.077 Sum_probs=29.6
Q ss_pred ccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCC
Q 001098 686 VHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 686 ~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
..++.||+||+|++.. .........+....++++.|-|-|.-
T Consensus 127 ~~~~~iiiDE~~~~~~----~~~~~l~~~~~~~~~~~~vGD~~Ql~ 168 (459)
T 3upu_A 127 AKCRVLICDEVSMYDR----KLFKILLSTIPPWCTIIGIGDNKQIR 168 (459)
T ss_dssp SSCSEEEESCGGGCCH----HHHHHHHHHSCTTCEEEEEECTTSCC
T ss_pred cCCCEEEEECchhCCH----HHHHHHHHhccCCCEEEEECCHHHcC
Confidence 3578999999999863 12222334455678999999999854
No 163
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=74.88 E-value=1.4 Score=58.07 Aligned_cols=75 Identities=4% Similarity=0.045 Sum_probs=45.9
Q ss_pred cCCEEEEECc-ccHHHHHHHHHhhcCCCCeEEEEecCCCCcccc-----c-ccCCCCEEEeechhhhhhhhcCCCCCccc
Q 001098 613 SRATLIVVPS-YLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAH-----S-LAWDYDVVITTFNRLSAEWGRRKKSPMMQ 685 (1158)
Q Consensus 613 s~~tLIVvP~-sLl~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~-----~-l~~~~DVVItTY~~L~~e~~~~~~~~L~~ 685 (1158)
.+.++|+||. .-+....+.+.+.++. .++.++||.-..... . ..+.++|+|+|- .+..- +.-
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~p~--~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-v~e~G--------iDi 880 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-IIETG--------IDI 880 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCTT--SCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-TTGGG--------SCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCC--CeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-cceee--------ecc
Confidence 3678999996 4577778888887754 678888886543211 1 124788888874 44321 111
Q ss_pred ccceEEEEccccc
Q 001098 686 VHWLRVMLDEGHT 698 (1158)
Q Consensus 686 ~~w~rVIlDEAH~ 698 (1158)
-.-+.||+.-+..
T Consensus 881 p~v~~VIi~~~~~ 893 (1151)
T 2eyq_A 881 PTANTIIIERADH 893 (1151)
T ss_dssp TTEEEEEETTTTS
T ss_pred cCCcEEEEeCCCC
Confidence 2345677665544
No 164
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=72.11 E-value=6.8 Score=47.82 Aligned_cols=42 Identities=14% Similarity=0.179 Sum_probs=31.9
Q ss_pred ccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCC
Q 001098 686 VHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 686 ~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
..++.||+|||+++.. ......+..+....+++|.|=|-|-.
T Consensus 261 l~~d~lIIDEAsml~~----~~~~~Ll~~l~~~~~liLvGD~~QL~ 302 (608)
T 1w36_D 261 LHLDVLVVDEASMIDL----PMMSRLIDALPDHARVIFLGDRDQLA 302 (608)
T ss_dssp CSCSEEEECSGGGCBH----HHHHHHHHTCCTTCEEEEEECTTSGG
T ss_pred CCCCEEEEechhhCCH----HHHHHHHHhCCCCCEEEEEcchhhcC
Confidence 3789999999998862 22233455677788999999998876
No 165
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=70.76 E-value=0.86 Score=46.28 Aligned_cols=31 Identities=16% Similarity=0.619 Sum_probs=24.8
Q ss_pred CCceeeccchhhhhhccccccc----CCCccceec
Q 001098 432 NETWVQCDACHKWRKLLDASVA----DATAAWFCS 462 (1158)
Q Consensus 432 ~~~wvqc~~c~kwr~~~~~~~~----~~~~~w~c~ 462 (1158)
++.|||||.|..|-+..+.... +..+.|+|.
T Consensus 20 ~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~ 54 (174)
T 2ri7_A 20 SKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCP 54 (174)
T ss_dssp TSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCH
T ss_pred CCCEeECCCCCchhChhhcCCchhhccCccCeecC
Confidence 5689999999999999886542 236789995
No 166
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=69.22 E-value=2.9 Score=47.86 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=39.8
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHH---cc---cCeEEEEeCCCCC
Q 001098 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS---LT---ASNRWLLTGTPTP 729 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~---L~---a~~RwlLTGTPiq 729 (1158)
..+|+|+|++.+...... ..+..-.+.+||+||||.+....- ......+.. +. ....+++||||..
T Consensus 151 ~~~I~v~Tp~~l~~~l~~---~~~~~~~~~~iViDEah~~~~~~~-~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~ 222 (417)
T 2i4i_A 151 GCHLLVATPGRLVDMMER---GKIGLDFCKYLVLDEADRMLDMGF-EPQIRRIVEQDTMPPKGVRHTMMFSATFPK 222 (417)
T ss_dssp CCSEEEECHHHHHHHHHT---TSBCCTTCCEEEESSHHHHHHTTC-HHHHHHHHTSSSCCCBTTBEEEEEESCCCH
T ss_pred CCCEEEEChHHHHHHHHc---CCcChhhCcEEEEEChhHhhccCc-HHHHHHHHHhccCCCcCCcEEEEEEEeCCH
Confidence 457888888887655432 223334578899999999864321 122222222 11 3457899999843
No 167
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=69.00 E-value=2.6 Score=49.12 Aligned_cols=66 Identities=18% Similarity=0.111 Sum_probs=40.4
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHH-Hc---ccCeEEEEeCCCCC
Q 001098 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SL---TASNRWLLTGTPTP 729 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~-~L---~a~~RwlLTGTPiq 729 (1158)
.++|+|+|++.|....... .+..-.+.+||+||||++.+..- ......+. .+ .....+++|||+..
T Consensus 179 ~~~Ivv~Tp~~l~~~l~~~---~~~l~~~~~lVlDEah~~~~~gf-~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 248 (434)
T 2db3_A 179 GCHVVIATPGRLLDFVDRT---FITFEDTRFVVLDEADRMLDMGF-SEDMRRIMTHVTMRPEHQTLMFSATFPE 248 (434)
T ss_dssp CCSEEEECHHHHHHHHHTT---SCCCTTCCEEEEETHHHHTSTTT-HHHHHHHHHCTTSCSSCEEEEEESCCCH
T ss_pred CCCEEEEChHHHHHHHHhC---CcccccCCeEEEccHhhhhccCc-HHHHHHHHHhcCCCCCceEEEEeccCCH
Confidence 4577888887776543321 22234567899999999876532 22222222 22 34568999999843
No 168
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=68.99 E-value=2 Score=36.40 Aligned_cols=32 Identities=25% Similarity=0.822 Sum_probs=24.1
Q ss_pred CCCceeeccc--hhhhhhcccccccC-------CCccceec
Q 001098 431 CNETWVQCDA--CHKWRKLLDASVAD-------ATAAWFCS 462 (1158)
Q Consensus 431 ~~~~wvqc~~--c~kwr~~~~~~~~~-------~~~~w~c~ 462 (1158)
.++.+||||. |..|.+..+..... .++.|||.
T Consensus 20 ~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~ 60 (68)
T 2rsd_A 20 VNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCE 60 (68)
T ss_dssp CCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCH
T ss_pred CCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECc
Confidence 4678999995 99999999965421 23579995
No 169
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=65.23 E-value=4.7 Score=29.74 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=27.4
Q ss_pred CCccccccccCCCceeEEecccccccccCCC
Q 001098 189 RHPLYIDLATEDGFYFYVNTVSGDIATGTAP 219 (1158)
Q Consensus 189 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (1158)
..+.|....+.+|+.+|+|..|++-+.+.|.
T Consensus 4 ~~~~W~e~~~~~G~~YYyN~~T~es~We~P~ 34 (37)
T 1e0l_A 4 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQ 34 (37)
T ss_dssp SSCSCEEEECTTSCEEEEETTTTEEESSCCS
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEecCCC
Confidence 4467999999999999999999999998876
No 170
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=64.30 E-value=6.5 Score=44.66 Aligned_cols=68 Identities=13% Similarity=0.029 Sum_probs=41.3
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHH-Hcc-cCeEEEEeCCCCC
Q 001098 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLT-ASNRWLLTGTPTP 729 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~-~L~-a~~RwlLTGTPiq 729 (1158)
..+|+|+|++.+...+.. ...+..-.+++||+||||.+............+. .+. ....+++||||..
T Consensus 143 ~~~ivv~T~~~l~~~~~~--~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 212 (412)
T 3fht_A 143 SEQIVIGTPGTVLDWCSK--LKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED 212 (412)
T ss_dssp CCSEEEECHHHHHHHHTT--SCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCH
T ss_pred CCCEEEECchHHHHHHHh--cCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCH
Confidence 457888888888654322 1233335788999999998754211122222232 233 3467899999854
No 171
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=64.22 E-value=3.2 Score=53.83 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=44.3
Q ss_pred cccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHH
Q 001098 163 MKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITAL 242 (1158)
Q Consensus 163 l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~L 242 (1158)
+..+|+|||++++..+... +..+++...|.|||+..+
T Consensus 83 ~~f~L~~~Q~eai~~l~~g-------------------------------------------~~vLV~apTGSGKTlva~ 119 (1010)
T 2xgj_A 83 YPFTLDPFQDTAISCIDRG-------------------------------------------ESVLVSAHTSAGKTVVAE 119 (1010)
T ss_dssp CSSCCCHHHHHHHHHHHHT-------------------------------------------CEEEEECCTTSCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcC-------------------------------------------CCEEEECCCCCChHHHHH
Confidence 3447999999999998651 136899999999999876
Q ss_pred HHHHh----hCCCcccCCc-cccccceec
Q 001098 243 SLILK----TQGTLADPPD-GVKIIWCTH 266 (1158)
Q Consensus 243 alI~~----~~~~~~~~P~-~~~~~W~~~ 266 (1158)
..|+. ....++++|. .+..||...
T Consensus 120 lai~~~l~~g~rvL~l~PtkaLa~Q~~~~ 148 (1010)
T 2xgj_A 120 YAIAQSLKNKQRVIYTSPIKALSNQKYRE 148 (1010)
T ss_dssp HHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHhccCCeEEEECChHHHHHHHHHH
Confidence 55543 2345567776 667778743
No 172
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=63.96 E-value=5 Score=29.34 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=27.8
Q ss_pred cCCccccccccCCCceeEEecccccccccCCCC
Q 001098 188 LRHPLYIDLATEDGFYFYVNTVSGDIATGTAPT 220 (1158)
Q Consensus 188 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 220 (1158)
.+.+-|+...+.+|+.+|+|..++.-+.+.|..
T Consensus 3 ~LP~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 3 GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp CSCTTEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence 356789988888999999999999988887753
No 173
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=63.46 E-value=2.4 Score=39.20 Aligned_cols=31 Identities=26% Similarity=0.781 Sum_probs=24.2
Q ss_pred CCceeecc-chhhhhhccccccc---------CCCccceec
Q 001098 432 NETWVQCD-ACHKWRKLLDASVA---------DATAAWFCS 462 (1158)
Q Consensus 432 ~~~wvqc~-~c~kwr~~~~~~~~---------~~~~~w~c~ 462 (1158)
++.||||| .|..|=+..+.-.. +....|+|.
T Consensus 16 ~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp 56 (105)
T 2xb1_A 16 DQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACD 56 (105)
T ss_dssp TSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCH
T ss_pred CCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECc
Confidence 56799998 99999999886543 234789993
No 174
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=63.22 E-value=5.7 Score=41.42 Aligned_cols=38 Identities=26% Similarity=0.231 Sum_probs=29.9
Q ss_pred CChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHHHH
Q 001098 166 KLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245 (1158)
Q Consensus 166 ~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~LalI 245 (1158)
+++|||.+++..++.. +..|++-..|-|||+..+..+
T Consensus 42 ~~~~~Q~~~i~~~~~~-------------------------------------------~~~l~~apTGsGKT~~~~l~~ 78 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQG-------------------------------------------IDLIVVAQTGTGKTLSYLMPG 78 (228)
T ss_dssp SCCHHHHHHHHHHHTT-------------------------------------------CCEEEECCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC-------------------------------------------CCEEEECCCCChHHHHHHHHH
Confidence 5999999999988651 135888889999999876655
Q ss_pred H
Q 001098 246 L 246 (1158)
Q Consensus 246 ~ 246 (1158)
+
T Consensus 79 ~ 79 (228)
T 3iuy_A 79 F 79 (228)
T ss_dssp H
T ss_pred H
Confidence 4
No 175
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=62.07 E-value=5.2 Score=30.10 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=27.3
Q ss_pred CCccccccccCCCceeEEecccccccccCCC
Q 001098 189 RHPLYIDLATEDGFYFYVNTVSGDIATGTAP 219 (1158)
Q Consensus 189 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (1158)
..+.|......+|+.+|+|..|++-+.+.|.
T Consensus 8 ~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~ 38 (40)
T 2ysi_A 8 TEEIWVENKTPDGKVYYYNARTRESAWTKPD 38 (40)
T ss_dssp CCCSEEEEECTTSCEEEEETTTCCEESSCCS
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEeCCCC
Confidence 4457999999999999999999999998876
No 176
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=61.74 E-value=6.4 Score=41.55 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=16.3
Q ss_pred CceeccCCCCchhHHHHHHHH
Q 001098 226 GGMFCDEPGLGKTITALSLIL 246 (1158)
Q Consensus 226 GGILaDeMGLGKTl~~LalI~ 246 (1158)
..+++-..|-|||+..+..++
T Consensus 68 ~~l~~a~TGsGKT~~~~l~~l 88 (245)
T 3dkp_A 68 ELLASAPTGSGKTLAFSIPIL 88 (245)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 358888899999998665554
No 177
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=61.05 E-value=2.1 Score=50.57 Aligned_cols=41 Identities=20% Similarity=0.388 Sum_probs=30.0
Q ss_pred CcccccccC---CCCceeeccchhhhhhcccccccCC----Cccceec
Q 001098 422 EKVSTDHFA---CNETWVQCDACHKWRKLLDASVADA----TAAWFCS 462 (1158)
Q Consensus 422 ~~~~~~~~~---~~~~wvqc~~c~kwr~~~~~~~~~~----~~~w~c~ 462 (1158)
+.+-+-|.. .+..|||||.|..|-+..|...... .+.|+|.
T Consensus 36 ~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 83 (488)
T 3kv5_D 36 PPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCP 83 (488)
T ss_dssp CCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCH
T ss_pred CCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECC
Confidence 445556643 2689999999999999999765332 3679994
No 178
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=60.99 E-value=7.1 Score=30.79 Aligned_cols=37 Identities=8% Similarity=0.035 Sum_probs=30.7
Q ss_pred ccccCCccccccccCCCceeEEecccccccccCCCCc
Q 001098 185 AEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTM 221 (1158)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 221 (1158)
....+++-|+...+..|+.+|+|..+...+.+.|...
T Consensus 10 ~~~~LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~~ 46 (49)
T 2zaj_A 10 SELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSGP 46 (49)
T ss_dssp CSSCCCTTEEEEEETTTEEEEEETTTTEEESSCCCSS
T ss_pred CCCCCCcCceEEEcCCCCEEEEeCCCCCEecCCCCCC
Confidence 3445677899988899999999999999999887654
No 179
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=60.33 E-value=6.9 Score=29.24 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=28.0
Q ss_pred ccCCccccccccCCCceeEEecccccccccCCC
Q 001098 187 VLRHPLYIDLATEDGFYFYVNTVSGDIATGTAP 219 (1158)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (1158)
..+.+-|+...+.+|+.+|+|..++.-+.+.|.
T Consensus 6 ~~LP~gW~~~~d~~Gr~YY~n~~T~~t~We~P~ 38 (40)
T 2ysh_A 6 SGLPPGWQSYLSPQGRRYYVNTTTNETTWERPS 38 (40)
T ss_dssp SSCCTTCEEEECTTSCEEEECSSSCCEESSSCC
T ss_pred CCCCCCceEEECCCCCEEEEECCCCCEeCCCCC
Confidence 345678999888999999999999998888765
No 180
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=60.05 E-value=7.3 Score=28.33 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=26.9
Q ss_pred cCCccccccccCCCceeEEecccccccccCCC
Q 001098 188 LRHPLYIDLATEDGFYFYVNTVSGDIATGTAP 219 (1158)
Q Consensus 188 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (1158)
.+.+-|+...+.+|+.+|+|..++..+.+.|.
T Consensus 4 ~LP~GWe~~~d~~G~~Yy~n~~t~~t~We~P~ 35 (36)
T 1wr3_A 4 PLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35 (36)
T ss_dssp CSCTTEEEEECSSSCEEEEETTTCCEESSCSC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEeeeCcC
Confidence 35677999888999999999999988887764
No 181
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=57.74 E-value=5.4 Score=48.31 Aligned_cols=54 Identities=7% Similarity=0.198 Sum_probs=32.7
Q ss_pred CCEEEEECcc-cHHHHHHHHHhhcCCCCeEEEEecCCCCcccc-----cc-cCCCCEEEeec
Q 001098 614 RATLIVVPSY-LVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAH-----SL-AWDYDVVITTF 668 (1158)
Q Consensus 614 ~~tLIVvP~s-Ll~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~-----~l-~~~~DVVItTY 668 (1158)
+++||.|+.. -+....+.+.+.++. .+.+..+|+.-..... .. ....+|+|+|-
T Consensus 289 ~~~iVF~~t~~~~~~l~~~L~~~~~~-~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~ 349 (579)
T 3sqw_A 289 YKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD 349 (579)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG
T ss_pred CcEEEECCcHHHHHHHHHHHHHhhcC-CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc
Confidence 5799999975 456666777766542 3677888876432211 11 13566777663
No 182
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=57.31 E-value=8.9 Score=30.32 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=29.4
Q ss_pred cCCccccccccCCCceeEEecccccccccCCCCcc
Q 001098 188 LRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMR 222 (1158)
Q Consensus 188 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 222 (1158)
.+++-|+...+.+|+.+|+|..++.-+.+.|....
T Consensus 11 ~LP~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~~~ 45 (50)
T 1i5h_W 11 PLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQN 45 (50)
T ss_dssp SCSTTEEEEECTTSCEEEEETTTTEEESSCTTTSC
T ss_pred CCCcCcEEEEcCCCCEEEEECCCCCEEeeCCCCCc
Confidence 45678998888999999999999999998887543
No 183
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=56.78 E-value=8.7 Score=28.52 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=27.4
Q ss_pred cCCccccccccCCCceeEEecccccccccCCC
Q 001098 188 LRHPLYIDLATEDGFYFYVNTVSGDIATGTAP 219 (1158)
Q Consensus 188 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (1158)
.+++-|+...+.+|+.+|+|..++..+...|.
T Consensus 6 ~LP~gWe~~~d~~G~~YY~n~~t~~t~We~P~ 37 (39)
T 2kyk_A 6 PLPPGWERRVDNMGRIYYVDHFTRTTTWQRPT 37 (39)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSCCEECCCCC
T ss_pred CCCCCcEEEEcCCCCEEEEECCCCCEeccCCC
Confidence 45677999888899999999999988887765
No 184
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=56.35 E-value=8.8 Score=27.78 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=26.4
Q ss_pred cCCccccccccCCCceeEEecccccccccCCC
Q 001098 188 LRHPLYIDLATEDGFYFYVNTVSGDIATGTAP 219 (1158)
Q Consensus 188 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (1158)
.+++-|+...+.+|+.+|+|..++..+...|.
T Consensus 4 ~LP~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 4 GLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp TCCTTEEEEECSSSCEEEEETTTTEEESSCCC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEeCcCCC
Confidence 34567999888899999999999988887664
No 185
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=56.28 E-value=9.4 Score=30.06 Aligned_cols=35 Identities=11% Similarity=-0.005 Sum_probs=29.6
Q ss_pred cCCccccccccCCCceeEEecccccccccCCCCcc
Q 001098 188 LRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMR 222 (1158)
Q Consensus 188 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 222 (1158)
.+.+-|+...+.+|+.||+|..+..-++..|....
T Consensus 11 ~LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~~~ 45 (49)
T 2ysb_A 11 PLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLESG 45 (49)
T ss_dssp CCCTTEEEEECSSSCEEEEETTTTEEESSCTTTSC
T ss_pred CCCCCceEEECCCCCEEEEEcCCCCEEecCCCCCC
Confidence 46678999888999999999999999988876543
No 186
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=56.16 E-value=11 Score=46.58 Aligned_cols=46 Identities=9% Similarity=0.210 Sum_probs=37.5
Q ss_pred cccchHHHHHHHHh--cCCEEEEECc-ccHHHHHHHHHhhcCCCCeEEEEe
Q 001098 599 LALCEPLDSVRLYL--SRATLIVVPS-YLVDHWKTQIQQHVRPGQLHLFVW 646 (1158)
Q Consensus 599 mGLGKTlqaiall~--s~~tLIVvP~-sLl~qW~~Ei~k~~~~~~l~v~v~ 646 (1158)
.|.|||..+..++. .+|+|||+|. .+..||.+|+..|++.. .|..|
T Consensus 37 tgs~kt~~~a~~~~~~~~~~lvv~~~~~~A~ql~~el~~~~~~~--~V~~f 85 (664)
T 1c4o_A 37 TGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRELFPEN--AVEYF 85 (664)
T ss_dssp TTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHHHCTTS--EEEEC
T ss_pred CCcHHHHHHHHHHHHhCCCEEEEecCHHHHHHHHHHHHHHCCCC--eEEEc
Confidence 79999999887764 5799999996 57899999999999763 44444
No 187
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=56.04 E-value=4.3 Score=34.73 Aligned_cols=31 Identities=23% Similarity=0.773 Sum_probs=24.3
Q ss_pred CCceeeccc--hh-hhhhcccccccCC-Cccceec
Q 001098 432 NETWVQCDA--CH-KWRKLLDASVADA-TAAWFCS 462 (1158)
Q Consensus 432 ~~~wvqc~~--c~-kwr~~~~~~~~~~-~~~w~c~ 462 (1158)
++.+|+||. |. .|=++.+...... ...|||.
T Consensus 26 ~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp 60 (71)
T 1wen_A 26 YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCP 60 (71)
T ss_dssp CSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCT
T ss_pred CCCEeEeeCCCCCCccEecccCCcCcCCCCCEECC
Confidence 468999999 88 8999988765433 4789994
No 188
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=55.77 E-value=7.8 Score=28.67 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=27.1
Q ss_pred cCCccccccccCCCceeEEecccccccccCCC
Q 001098 188 LRHPLYIDLATEDGFYFYVNTVSGDIATGTAP 219 (1158)
Q Consensus 188 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (1158)
.+.+-|+...+.+|+.+|+|..++..+.+.|.
T Consensus 6 ~LP~gWe~~~~~~G~~Yy~nh~t~~ttW~~Pr 37 (38)
T 2law_A 6 PLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37 (38)
T ss_dssp CCSSSCCEEEETTTEEEEEETTTTEEESSCTT
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 45678998888999999999999988887664
No 189
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=54.59 E-value=11 Score=28.14 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=27.6
Q ss_pred ccCCccccccccCCCceeEEecccccccccCCC
Q 001098 187 VLRHPLYIDLATEDGFYFYVNTVSGDIATGTAP 219 (1158)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (1158)
..+++-|+...+.+|+.+|+|..++.-+...|.
T Consensus 6 ~~LP~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~ 38 (40)
T 2ysg_A 6 SGLPYGWEEAYTADGIKYFINHVTQTTSWIHPV 38 (40)
T ss_dssp SCCCTTEEEEECSSSCEEEEESSSCCEECCCCC
T ss_pred CCCCCCcEEEEcCCCCEEEEECCCCcCcCCCCC
Confidence 346677998888999999999999988887765
No 190
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=54.55 E-value=4.7 Score=33.10 Aligned_cols=31 Identities=23% Similarity=0.768 Sum_probs=23.9
Q ss_pred CCceeeccc--hh-hhhhcccccccCC-Cccceec
Q 001098 432 NETWVQCDA--CH-KWRKLLDASVADA-TAAWFCS 462 (1158)
Q Consensus 432 ~~~wvqc~~--c~-kwr~~~~~~~~~~-~~~w~c~ 462 (1158)
++..||||. |. .|=++........ ...|||.
T Consensus 19 ~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp 53 (59)
T 3c6w_A 19 YGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCP 53 (59)
T ss_dssp CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCH
T ss_pred CCCeeEeeCCCCCCCCEecccCCcccCCCCCEECc
Confidence 467999999 87 7999988765332 4689994
No 191
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.44 E-value=12 Score=28.51 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=29.3
Q ss_pred ccCCccccccccCCCceeEEecccccccccCCCCc
Q 001098 187 VLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTM 221 (1158)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 221 (1158)
..+.+-|+...+.+|+.+|+|..++..+.+.|...
T Consensus 6 ~~LP~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~~ 40 (43)
T 2dmv_A 6 SGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGP 40 (43)
T ss_dssp CSCCTTEEEEECTTSCEEEEETTTCCEESSCSSSC
T ss_pred CCCCCCceEEECCCCCEEEEECCCCCEecCCcCCC
Confidence 34567899988889999999999999999887643
No 192
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=54.39 E-value=38 Score=30.71 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=44.1
Q ss_pred eEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccC
Q 001098 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHD 1040 (1158)
Q Consensus 993 KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~ 1040 (1158)
-.+|||.-+..|.-|-..++..|+.++.+++....+.|.+.++.|...
T Consensus 4 ifvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHc
Confidence 368999999999999999999999999999999999999999999754
No 193
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.24 E-value=4.1 Score=36.59 Aligned_cols=31 Identities=23% Similarity=0.781 Sum_probs=24.3
Q ss_pred CCceeeccc--hh-hhhhcccccccC-CCccceec
Q 001098 432 NETWVQCDA--CH-KWRKLLDASVAD-ATAAWFCS 462 (1158)
Q Consensus 432 ~~~wvqc~~--c~-kwr~~~~~~~~~-~~~~w~c~ 462 (1158)
++.+||||. |. .|=++.+..... ....|||.
T Consensus 46 ~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp 80 (91)
T 1weu_A 46 YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCP 80 (91)
T ss_dssp CSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCT
T ss_pred CCCEeEecCCCCCCCCEecccCCcCcCCCCCEECc
Confidence 468999999 77 899999876543 34689994
No 194
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=53.55 E-value=5 Score=33.33 Aligned_cols=31 Identities=23% Similarity=0.733 Sum_probs=23.8
Q ss_pred CCceeeccc--hh-hhhhcccccccC-CCccceec
Q 001098 432 NETWVQCDA--CH-KWRKLLDASVAD-ATAAWFCS 462 (1158)
Q Consensus 432 ~~~wvqc~~--c~-kwr~~~~~~~~~-~~~~w~c~ 462 (1158)
++.+||||. |. .|=++.+..... ....|||.
T Consensus 21 ~g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp 55 (62)
T 2g6q_A 21 YGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCP 55 (62)
T ss_dssp CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCH
T ss_pred CCCeeeeeCCCCCcccEecccCCcCcCCCCCEECc
Confidence 457999999 66 999998876533 35689994
No 195
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=53.41 E-value=8.9 Score=41.14 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=15.9
Q ss_pred ceeccCCCCchhHHHHHHHH
Q 001098 227 GMFCDEPGLGKTITALSLIL 246 (1158)
Q Consensus 227 GILaDeMGLGKTl~~LalI~ 246 (1158)
.|++-..|-|||+..+..++
T Consensus 94 ~lv~a~TGsGKT~~~~l~~l 113 (262)
T 3ly5_A 94 LLAAAKTGSGKTLAFLIPAV 113 (262)
T ss_dssp CEECCCTTSCHHHHHHHHHH
T ss_pred EEEEccCCCCchHHHHHHHH
Confidence 58888899999998665554
No 196
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=52.86 E-value=6.5 Score=29.71 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=25.1
Q ss_pred CCccccccccCCCceeEEecccccccccCCC
Q 001098 189 RHPLYIDLATEDGFYFYVNTVSGDIATGTAP 219 (1158)
Q Consensus 189 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (1158)
..+.|......+|+.+|+|..|++-+.+.|.
T Consensus 10 ~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~ 40 (41)
T 1ywi_A 10 AKSMWTEHKSPDGRTYYYNTETKQSTWEKPD 40 (41)
T ss_dssp --CCEEEEEETTTEEEEEETTTTEEEESCC-
T ss_pred CCCCcEEEECCCCCEEEEECCCCCEEeCCCC
Confidence 3457998888899999999999998888764
No 197
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=52.69 E-value=4.2 Score=47.92 Aligned_cols=33 Identities=24% Similarity=0.786 Sum_probs=26.6
Q ss_pred cCCCCceeeccchhhhhhcccccccC----CCcccee
Q 001098 429 FACNETWVQCDACHKWRKLLDASVAD----ATAAWFC 461 (1158)
Q Consensus 429 ~~~~~~wvqc~~c~kwr~~~~~~~~~----~~~~w~c 461 (1158)
...+..|||||.|..|-+..|..... ..+.|+|
T Consensus 52 ~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~C 88 (528)
T 3pur_A 52 KKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFC 88 (528)
T ss_dssp TTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCC
T ss_pred CCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEEC
Confidence 35678999999999999999976532 2478999
No 198
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=52.03 E-value=2.9 Score=42.77 Aligned_cols=21 Identities=19% Similarity=0.610 Sum_probs=17.8
Q ss_pred CCceeeccchhhhhhcccccc
Q 001098 432 NETWVQCDACHKWRKLLDASV 452 (1158)
Q Consensus 432 ~~~wvqc~~c~kwr~~~~~~~ 452 (1158)
+..|||||.|..|-+..+...
T Consensus 18 ~~~MIqCd~C~~W~H~~Cvgi 38 (183)
T 3lqh_A 18 ESKMMQCGKCDRWVHSKCENL 38 (183)
T ss_dssp TCCEEECTTTCCEEEGGGSSC
T ss_pred CCCeEECCCCCcccchhcccc
Confidence 346999999999999988654
No 199
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=51.66 E-value=8.5 Score=26.31 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=21.0
Q ss_pred cccccccCCCceeEEecccccccccCC
Q 001098 192 LYIDLATEDGFYFYVNTVSGDIATGTA 218 (1158)
Q Consensus 192 ~~~~~~~~~~~~~y~~~~~~~~~~~~~ 218 (1158)
-|+ +....|+.+|+|..+++-+.+.|
T Consensus 2 gWe-~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 2 GWE-IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred CCe-EECCCCCeEEEECCCCCEeccCC
Confidence 466 67788999999999988777654
No 200
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=49.93 E-value=24 Score=42.77 Aligned_cols=47 Identities=6% Similarity=0.111 Sum_probs=31.0
Q ss_pred CcccccceEEEEccccccCCCchHHHHHHHHH-Hcc--cCeEEEEeCCCCCCC
Q 001098 682 PMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLT--ASNRWLLTGTPTPNT 731 (1158)
Q Consensus 682 ~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~-~L~--a~~RwlLTGTPiqN~ 731 (1158)
.+.....+++|+||+|.+++.. ....++. .+. ...++++++||-..+
T Consensus 268 ~lrG~~~~~~iiDE~~~~~~~~---~l~~~~~~~l~~~~~~~ii~isTP~~~~ 317 (592)
T 3cpe_A 268 AVRGNSFAMIYIEDCAFIPNFH---DSWLAIQPVISSGRRSKIIITTTPNGLN 317 (592)
T ss_dssp HHHHSCCSEEEEETGGGCTTHH---HHHHHHHHHHSSSSCCEEEEEECCCTTS
T ss_pred CccCCCcceEEEehhccCCchh---HHHHHHHHHhccCCCceEEEEeCCCCch
Confidence 3456678899999999998631 2222333 232 346899999996553
No 201
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=49.90 E-value=14 Score=27.72 Aligned_cols=33 Identities=12% Similarity=-0.046 Sum_probs=27.8
Q ss_pred ccCCccccccccCCCceeEEecccccccccCCC
Q 001098 187 VLRHPLYIDLATEDGFYFYVNTVSGDIATGTAP 219 (1158)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (1158)
..+++-|+...+.+|+.+|+|..+..-+...|.
T Consensus 6 ~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 38 (40)
T 2ysf_A 6 SGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38 (40)
T ss_dssp CCCCSSEEEEECTTCCEEEEETTTCCEESSCTT
T ss_pred CCCCcCcEEEEcCCCCEEEEECCCCcEecCCCC
Confidence 456678998888999999999999988887765
No 202
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=49.85 E-value=14 Score=43.16 Aligned_cols=68 Identities=13% Similarity=0.028 Sum_probs=40.6
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHH-Hcc-cCeEEEEeCCCCC
Q 001098 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLT-ASNRWLLTGTPTP 729 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~-~L~-a~~RwlLTGTPiq 729 (1158)
..+|+|+|++.+...+... ..+..-.+.+||+||+|.+............+. .+. ....+++||||..
T Consensus 210 ~~~Ivv~Tp~~l~~~l~~~--~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 279 (479)
T 3fmp_B 210 SEQIVIGTPGTVLDWCSKL--KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED 279 (479)
T ss_dssp CCSEEEECHHHHHHHHTTS--CCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCH
T ss_pred CCCEEEECchHHHHHHHhc--CCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCH
Confidence 3478888888876543221 223334678999999998864222222222333 222 3568899999854
No 203
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=48.95 E-value=3.2 Score=49.43 Aligned_cols=67 Identities=18% Similarity=0.112 Sum_probs=40.7
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHH-Hcc-cCeEEEEeCCCCC
Q 001098 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLT-ASNRWLLTGTPTP 729 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~-~L~-a~~RwlLTGTPiq 729 (1158)
.++|+|+|++.+...... ..+..-.+++||+||+|.+............+. .+. ....+++||||..
T Consensus 235 ~~~Ivv~T~~~l~~~l~~---~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~ 303 (508)
T 3fho_A 235 DAQIVIGTPGTVMDLMKR---RQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSE 303 (508)
T ss_dssp CCSEEEECHHHHHHHHHT---TCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCST
T ss_pred CCCEEEECHHHHHHHHHc---CCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCH
Confidence 457888888877654332 222334678999999999875222122222232 333 4457899999854
No 204
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=48.03 E-value=6.9 Score=32.20 Aligned_cols=31 Identities=23% Similarity=0.773 Sum_probs=23.8
Q ss_pred CCceeeccc--hh-hhhhcccccccCC-Cccceec
Q 001098 432 NETWVQCDA--CH-KWRKLLDASVADA-TAAWFCS 462 (1158)
Q Consensus 432 ~~~wvqc~~--c~-kwr~~~~~~~~~~-~~~w~c~ 462 (1158)
++..|+||. |. .|=++........ ...|||.
T Consensus 20 ~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~ 54 (60)
T 2vnf_A 20 YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCP 54 (60)
T ss_dssp CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCH
T ss_pred CCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECc
Confidence 468999999 76 8999988665432 4789994
No 205
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=47.96 E-value=11 Score=28.36 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=27.4
Q ss_pred ccCCccccccccCCCceeEEecccccccccCCC
Q 001098 187 VLRHPLYIDLATEDGFYFYVNTVSGDIATGTAP 219 (1158)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (1158)
..+.+-|+...+.+|+.+|+|..++..+.+.|.
T Consensus 7 ~~LP~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr 39 (41)
T 1wr7_A 7 SFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39 (41)
T ss_dssp CSSCTTEEEEECTTSCEEEEETTTTEEESSCGG
T ss_pred CCCCCCcEEEEcCCCCEEEEECCCCCeecCCCC
Confidence 345678999888899999999999988887664
No 206
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=47.92 E-value=9.3 Score=34.22 Aligned_cols=31 Identities=26% Similarity=0.599 Sum_probs=23.8
Q ss_pred CCceeeccchh---hhhhcccccccCC-Cccceec
Q 001098 432 NETWVQCDACH---KWRKLLDASVADA-TAAWFCS 462 (1158)
Q Consensus 432 ~~~wvqc~~c~---kwr~~~~~~~~~~-~~~w~c~ 462 (1158)
.+.+|+||.|. .|=++.+...... ...|||.
T Consensus 36 ~g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp 70 (90)
T 2jmi_A 36 YGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCS 70 (90)
T ss_dssp SSSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSS
T ss_pred CCCEEEecCCCCccccCcCccCCCCcCCCCCccCC
Confidence 45799999976 9999998765332 4689994
No 207
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=46.93 E-value=13 Score=44.67 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=15.7
Q ss_pred ceeccCCCCchhHHHHHHHH
Q 001098 227 GMFCDEPGLGKTITALSLIL 246 (1158)
Q Consensus 227 GILaDeMGLGKTl~~LalI~ 246 (1158)
.|++-..|-|||+..+..|+
T Consensus 114 ~lv~apTGsGKTl~~~lpil 133 (563)
T 3i5x_A 114 VIARAKTGTGKTFAFLIPIF 133 (563)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCccHHHHHHHH
Confidence 47778899999998665554
No 208
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=46.57 E-value=13 Score=29.20 Aligned_cols=34 Identities=6% Similarity=-0.021 Sum_probs=28.7
Q ss_pred ccCCccccccccCCCceeEEecccccccccCCCC
Q 001098 187 VLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPT 220 (1158)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 220 (1158)
..+.+-|+...+.+|+.+|+|..++..+.+.|..
T Consensus 11 ~~LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~ 44 (49)
T 2kpz_A 11 GFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRL 44 (49)
T ss_dssp -CCCTTEEEEECTTSCEEEEETTTTEEESSCTTC
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCCEecCCCCC
Confidence 3466789998889999999999999999988764
No 209
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=46.40 E-value=15 Score=27.80 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=28.1
Q ss_pred cCCccccccccCCCceeEEecccccccccCCCC
Q 001098 188 LRHPLYIDLATEDGFYFYVNTVSGDIATGTAPT 220 (1158)
Q Consensus 188 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 220 (1158)
.+.+-|+...+.+|+.+|+|..++.-+...|..
T Consensus 7 ~LP~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~ 39 (42)
T 2djy_A 7 PLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 39 (42)
T ss_dssp CCCSSEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCCcCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 456789988889999999999999888887764
No 210
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=46.21 E-value=13 Score=28.24 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=27.2
Q ss_pred cCCccccccccCCCceeEEecccccccccCCC
Q 001098 188 LRHPLYIDLATEDGFYFYVNTVSGDIATGTAP 219 (1158)
Q Consensus 188 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (1158)
.+.+-|....+.+|+.+|+|..++..+...|.
T Consensus 8 ~LP~gW~~~~~~~Gr~YY~n~~T~~t~We~P~ 39 (43)
T 1ymz_A 8 PLPPGWERRTDVEGKVYYFNVRTLTTTWERPT 39 (43)
T ss_dssp CCCSSEEEEECTTSCEEEEETTTTEEESSCCC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCCcccCCc
Confidence 34567988888899999999999998888775
No 211
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=45.79 E-value=17 Score=28.13 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=28.8
Q ss_pred ccCCccccccccCCCceeEEecccccccccCCCC
Q 001098 187 VLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPT 220 (1158)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 220 (1158)
..+.+-|+...+.+|+.+|+|..++.-+.+.|..
T Consensus 9 ~~LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~ 42 (46)
T 2ez5_W 9 EPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRN 42 (46)
T ss_dssp CCCCTTEEEEECTTSSEEEEETTTTEEESBCTTT
T ss_pred CCCCcCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence 3466789988889999999999999888887764
No 212
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=43.57 E-value=54 Score=39.82 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=33.2
Q ss_pred CcccchHHHHHHHH----hc-----CCEEEEECcc-cHHHHHHHHHhhcCC--CCeEEEEec
Q 001098 598 RLALCEPLDSVRLY----LS-----RATLIVVPSY-LVDHWKTQIQQHVRP--GQLHLFVWT 647 (1158)
Q Consensus 598 ~mGLGKTlqaiall----~s-----~~tLIVvP~s-Ll~qW~~Ei~k~~~~--~~l~v~v~~ 647 (1158)
+-|.|||.+.+..+ .. ..+|+|+++. ...+-.+.+.+.++. ..+.+..+|
T Consensus 30 ~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~~~~v~Tfh 91 (647)
T 3lfu_A 30 GAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWVGTFH 91 (647)
T ss_dssp CTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCTTCEEEEHH
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccccCCcEEEcHH
Confidence 48999998876533 22 4799999976 456666777776543 235555555
No 213
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=43.28 E-value=17 Score=29.22 Aligned_cols=33 Identities=6% Similarity=0.004 Sum_probs=27.6
Q ss_pred cCCccccccccC-CCceeEEecccccccccCCCC
Q 001098 188 LRHPLYIDLATE-DGFYFYVNTVSGDIATGTAPT 220 (1158)
Q Consensus 188 ~~~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~ 220 (1158)
.+++-|....+. .|+.+|+|..|+.-+.+.|..
T Consensus 7 ~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~ 40 (54)
T 2jv4_A 7 GLPAGWEVRHSNSKNLPYYFNPATRESRWEPPAD 40 (54)
T ss_dssp CCCSSCCEEECSSSSCEEEEETTTTEEESSCCTT
T ss_pred CCCCCcEEEEECCCCCEEEEECCCCcEEecCCCC
Confidence 467789887664 899999999999999988763
No 214
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=42.89 E-value=3.8 Score=47.82 Aligned_cols=31 Identities=19% Similarity=0.573 Sum_probs=25.0
Q ss_pred CCceeeccchhhhhhcccccccC----CCccceec
Q 001098 432 NETWVQCDACHKWRKLLDASVAD----ATAAWFCS 462 (1158)
Q Consensus 432 ~~~wvqc~~c~kwr~~~~~~~~~----~~~~w~c~ 462 (1158)
++.|||||.|..|-+..|..... ..+.|+|.
T Consensus 17 ~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~ 51 (447)
T 3kv4_A 17 TRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCP 51 (447)
T ss_dssp TSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCH
T ss_pred CCCeEEcCCCCcccccccCCcCcccccCCCEEECC
Confidence 58999999999999999976532 23789994
No 215
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=42.46 E-value=20 Score=37.63 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=15.5
Q ss_pred ceeccCCCCchhHHHHHHHH
Q 001098 227 GMFCDEPGLGKTITALSLIL 246 (1158)
Q Consensus 227 GILaDeMGLGKTl~~LalI~ 246 (1158)
.+++-..|-|||+..+..++
T Consensus 69 ~l~~apTGsGKT~~~~l~~l 88 (242)
T 3fe2_A 69 MVGVAQTGSGKTLSYLLPAI 88 (242)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCcCHHHHHHHHHHH
Confidence 57777889999998765555
No 216
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=42.02 E-value=24 Score=43.40 Aligned_cols=41 Identities=10% Similarity=0.180 Sum_probs=35.1
Q ss_pred cccchHHHHHHHHh--cCCEEEEECc-ccHHHHHHHHHhhcCCC
Q 001098 599 LALCEPLDSVRLYL--SRATLIVVPS-YLVDHWKTQIQQHVRPG 639 (1158)
Q Consensus 599 mGLGKTlqaiall~--s~~tLIVvP~-sLl~qW~~Ei~k~~~~~ 639 (1158)
.|.|||..+..++. .+|+|||+|. .+..||.+|+..|++..
T Consensus 41 ~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~el~~~~~~~ 84 (661)
T 2d7d_A 41 TGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPNN 84 (661)
T ss_dssp TTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHCTTS
T ss_pred CCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHcCCC
Confidence 78999998887764 5799999996 57899999999999763
No 217
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=41.74 E-value=20 Score=27.72 Aligned_cols=34 Identities=12% Similarity=0.017 Sum_probs=28.6
Q ss_pred ccCCccccccccCCCceeEEecccccccccCCCC
Q 001098 187 VLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPT 220 (1158)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 220 (1158)
..+.+-|+...+.+|+.+|+|..++.-+.+.|..
T Consensus 10 ~~LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr~ 43 (46)
T 2l4j_A 10 GPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRL 43 (46)
T ss_dssp SCCCTTCEEEECTTSCEEEEETTTTEEECSCCSS
T ss_pred CCCCcCceeEECCCCCEEEEECCCCCEeCCCCCc
Confidence 3466789998889999999999999888887753
No 218
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=40.61 E-value=21 Score=26.51 Aligned_cols=32 Identities=9% Similarity=0.130 Sum_probs=26.8
Q ss_pred cCCccccccccCCCceeEEecccccccccCCCC
Q 001098 188 LRHPLYIDLATEDGFYFYVNTVSGDIATGTAPT 220 (1158)
Q Consensus 188 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 220 (1158)
.+.+-|+...+..| .+|+|..++..+.+.|..
T Consensus 3 ~LP~GWe~~~d~~g-~YY~n~~t~~tqWe~P~~ 34 (38)
T 2ho2_A 3 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 34 (38)
T ss_dssp CSCTTEEEEECSSC-EEEEETTTTEEESSCCCC
T ss_pred cCCCCceEEEeCCC-CEEEecCCCCEeccCCCC
Confidence 35677998888888 999999999999988763
No 219
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=39.84 E-value=20 Score=28.18 Aligned_cols=35 Identities=9% Similarity=-0.004 Sum_probs=29.2
Q ss_pred ccCCccccccccCCCceeEEecccccccccCCCCc
Q 001098 187 VLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTM 221 (1158)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 221 (1158)
..+++-|+...+..|+.+|+|..++.-+.+.|...
T Consensus 12 ~~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~~~ 46 (49)
T 2dwv_A 12 EGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGP 46 (49)
T ss_dssp SCCCTTEEEEEETTTEEEEEETTTTEEESSCCCCC
T ss_pred CCCCcCcEEEECCCCCEEEEECCCCCEeccCcCCC
Confidence 34567899988889999999999999888887643
No 220
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.58 E-value=8.1 Score=32.86 Aligned_cols=31 Identities=19% Similarity=0.570 Sum_probs=23.9
Q ss_pred CCceeeccch---hhhhhcccccccC-CCccceec
Q 001098 432 NETWVQCDAC---HKWRKLLDASVAD-ATAAWFCS 462 (1158)
Q Consensus 432 ~~~wvqc~~c---~kwr~~~~~~~~~-~~~~w~c~ 462 (1158)
++..||||.| ..|=++.+..... ....|||.
T Consensus 16 ~g~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp 50 (70)
T 1x4i_A 16 YGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCP 50 (70)
T ss_dssp CSSEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCH
T ss_pred CCCEeEeCCCCCCccCCcccccccCcCCCCCEECC
Confidence 4589999997 4899998876533 36799994
No 221
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=38.16 E-value=6.8 Score=42.84 Aligned_cols=13 Identities=23% Similarity=0.015 Sum_probs=11.0
Q ss_pred ceEEEEccccccC
Q 001098 688 WLRVMLDEGHTLG 700 (1158)
Q Consensus 688 w~rVIlDEAH~ik 700 (1158)
...|++||+|.+.
T Consensus 131 ~~vl~iDEid~l~ 143 (309)
T 3syl_A 131 GGVLFIDEAYYLY 143 (309)
T ss_dssp TSEEEEETGGGSC
T ss_pred CCEEEEEChhhhc
Confidence 4589999999994
No 222
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.77 E-value=17 Score=29.86 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=28.4
Q ss_pred cccCCccccccccCCCceeEEecccccccccCCC
Q 001098 186 EVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAP 219 (1158)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (1158)
...+++-|+...+..|+.+|+|..+..-++..|.
T Consensus 11 ~~~LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~ 44 (60)
T 2yse_A 11 ELELPAGWEKIEDPVYGIYYVDHINRKTQYENPV 44 (60)
T ss_dssp CSSCCSSEEEEECSSSCEEEEETTTTEEESSCHH
T ss_pred CCCCCCCcEEEECCCCCEEEEeCCCCCeeccCCC
Confidence 3456778999888999999999999888887764
No 223
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.11 E-value=17 Score=30.99 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=27.2
Q ss_pred ccccccccCCCceeEEecccccccccCCCC
Q 001098 191 PLYIDLATEDGFYFYVNTVSGDIATGTAPT 220 (1158)
Q Consensus 191 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 220 (1158)
..|....+.+|+.||||..|..-.++.|..
T Consensus 20 t~W~~v~T~dGR~fyyN~~Tk~S~WekP~e 49 (73)
T 2dk7_A 20 TPWCVVWTGDERVFFYNPTTRLSMWDRPDD 49 (73)
T ss_dssp SSCEEEEESSSCEEEEETTTTEECSSCCTT
T ss_pred CCcEEEECCCCCEEEecCcccceeccCChH
Confidence 469999999999999999999999998874
No 224
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=37.10 E-value=33 Score=27.49 Aligned_cols=34 Identities=12% Similarity=0.027 Sum_probs=28.9
Q ss_pred ccCCccccccccCCCceeEEecccccccccCCCC
Q 001098 187 VLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPT 220 (1158)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 220 (1158)
..+++-|+...+..|+.||+|..+...+++.|..
T Consensus 10 ~~LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~ 43 (54)
T 1wmv_A 10 GDLPYGWEQETDENGQVFFVDHINKRTTYLDPRL 43 (54)
T ss_dssp SCSCTTEEEEECTTSCEEEEESSSCCEESSCTTS
T ss_pred CCCCcCcEEEECCCCCEEEEeCCCCCEeecCCCC
Confidence 3467789988888999999999999888888764
No 225
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=35.39 E-value=18 Score=28.54 Aligned_cols=30 Identities=17% Similarity=0.364 Sum_probs=26.6
Q ss_pred ccccccccCCCceeEEecccccccccCCCC
Q 001098 191 PLYIDLATEDGFYFYVNTVSGDIATGTAPT 220 (1158)
Q Consensus 191 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 220 (1158)
..|......+|+.+|+|..|++-+.+.|..
T Consensus 7 ~~W~e~~s~~G~~YYyN~~T~eS~WekP~~ 36 (50)
T 2dk1_A 7 GRWVEGITSEGYHYYYDLISGASQWEKPEG 36 (50)
T ss_dssp CCEEECCCSTTCCCEEESSSCCEESSCCTT
T ss_pred CCeEEEECCCCCEEEEECCCCCEEeeCChh
Confidence 468888888999999999999999999873
No 226
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=34.65 E-value=24 Score=28.40 Aligned_cols=34 Identities=9% Similarity=0.139 Sum_probs=29.4
Q ss_pred cccCCccccccccCCCceeEEecccccccccCCCC
Q 001098 186 EVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPT 220 (1158)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 220 (1158)
...++|-|++..+..| .+|+|..++..+.+.|..
T Consensus 17 ~~~LPpGW~~~~D~sG-tYY~h~~T~tTQWerP~~ 50 (55)
T 2e45_A 17 DSDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 50 (55)
T ss_dssp CSCCCTTEEEEEETTE-EEEEETTTCCEESSCCCC
T ss_pred CCCCCCCCeEeecCCC-CEEEEcCCCCCccCCCCC
Confidence 3457788999999988 999999999999998864
No 227
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=34.43 E-value=48 Score=39.06 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=48.9
Q ss_pred cccchHHHHHHHHh--cCCEEEEECc-ccHHHHHHHHHhhcCCCCeEEEEecCCCC-------cc----------ccccc
Q 001098 599 LALCEPLDSVRLYL--SRATLIVVPS-YLVDHWKTQIQQHVRPGQLHLFVWTDHKK-------PS----------AHSLA 658 (1158)
Q Consensus 599 mGLGKTlqaiall~--s~~tLIVvP~-sLl~qW~~Ei~k~~~~~~l~v~v~~g~~~-------~~----------~~~l~ 658 (1158)
.|.|||+.+.+++. .+|+|||||. ....+|.+|+..|++.. |+.|-.... +. ...+.
T Consensus 23 ~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~~~~~---v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~ 99 (483)
T 3hjh_A 23 TGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM---VMNLADWETLPYDSFSPHQDIISSRLSTLYQLP 99 (483)
T ss_dssp CTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHTCSSC---EEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGG
T ss_pred CchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhCCCc---EEEEeCcccccccccCCChHHHHHHHHHHHHHH
Confidence 68899998888774 4799999996 56799999999998752 555543211 10 11111
Q ss_pred -CCCCEEEeechhhh
Q 001098 659 -WDYDVVITTFNRLS 672 (1158)
Q Consensus 659 -~~~DVVItTY~~L~ 672 (1158)
.+..|||+|.+.+.
T Consensus 100 ~~~~~ivv~sv~al~ 114 (483)
T 3hjh_A 100 TMQRGVLIVPVNTLM 114 (483)
T ss_dssp GCCSSEEEEEHHHHH
T ss_pred hCCCCEEEEEHHHHh
Confidence 23468999988876
No 228
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=34.26 E-value=11 Score=41.49 Aligned_cols=50 Identities=14% Similarity=0.327 Sum_probs=35.8
Q ss_pred CCCccCCCCCCCCCCCCcHHHHHHHHhhcCCCcHH-HHHHHhhhhhhcccc
Q 001098 109 SRVKPEDNSCSTGISDIADDIVISILTRLGPIDLV-RIAATCRHLRCLAAS 158 (1158)
Q Consensus 109 ~~~~p~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~ 158 (1158)
++..++.+.....+..||+|++..|+.+|.+.++. +....|+..+.+...
T Consensus 38 ~~~~~~~~~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~ 88 (297)
T 2e31_A 38 EAEEEEEAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDG 88 (297)
T ss_dssp ---------CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTS
T ss_pred cccccCccccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcC
Confidence 34445555556688899999999999999999998 899999988876554
No 229
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=33.02 E-value=33 Score=27.43 Aligned_cols=34 Identities=15% Similarity=0.027 Sum_probs=28.7
Q ss_pred ccCCccccccccCCCceeEEecccccccccCCCC
Q 001098 187 VLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPT 220 (1158)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 220 (1158)
..+.+-|+...+.+|+.||+|..+...++..|..
T Consensus 17 ~~LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~ 50 (53)
T 2jmf_A 17 GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRP 50 (53)
T ss_dssp SCCCTTEEEEECTTSCEEEEETTTCCEESSCCCS
T ss_pred CCCCcCcEEEEcCCCCEEEEeCCCCcEecCCCCC
Confidence 4567789988889999999999999888887653
No 230
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=32.93 E-value=27 Score=25.99 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=26.0
Q ss_pred ccCCccccccccCCCceeEEecccccccccCCC
Q 001098 187 VLRHPLYIDLATEDGFYFYVNTVSGDIATGTAP 219 (1158)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (1158)
..+++-|+...+..| .+|+|..++..+.+.|.
T Consensus 7 ~~LP~GWe~~~~~~G-~YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 7 GGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CCCCTTEEEEEETTE-EEEEESSSCCEESSCCC
T ss_pred CCCCCCcEEEEcCCC-CEEEEcCCCCEeccCCC
Confidence 456778999888888 59999999988887763
No 231
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=32.62 E-value=1.5e+02 Score=29.98 Aligned_cols=44 Identities=5% Similarity=0.139 Sum_probs=24.0
Q ss_pred cceEEEEccccccCCCch-HHHHHHHHHHccc--CeEEEEeCCCCCC
Q 001098 687 HWLRVMLDEGHTLGSSLN-LTNKLQMAISLTA--SNRWLLTGTPTPN 730 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s-~t~~~~~~~~L~a--~~RwlLTGTPiqN 730 (1158)
....||+||+|.+..... .......+..+.. ..++++|++....
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~ 150 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPM 150 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTT
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHH
Confidence 357899999999975321 1222222222222 2258888774443
No 232
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=32.19 E-value=8.8 Score=42.15 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=34.8
Q ss_pred CCCCCCcHHHHHHHHhhcCCCcHHHHHHHhhhhhhccccc
Q 001098 120 TGISDIADDIVISILTRLGPIDLVRIAATCRHLRCLAASI 159 (1158)
Q Consensus 120 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (1158)
..+.+||.+++..|+++|+++|+.++..+|+.++.+....
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~ 42 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDP 42 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCH
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccc
Confidence 3467899999999999999999999999999888865543
No 233
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=32.05 E-value=98 Score=28.07 Aligned_cols=59 Identities=10% Similarity=0.044 Sum_probs=39.9
Q ss_pred CCCeEEEEec------cHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEE
Q 001098 990 LPDKVIIFSQ------FLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLM 1048 (1158)
Q Consensus 990 ~~~KVLVFSq------f~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~ 1048 (1158)
...+|+||+. +=..-....+.|...|++|..++=......+..+.+......-+.|++-
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi~ 80 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYIG 80 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEET
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEEC
Confidence 5579999998 4567788888999999999888754455555555444433333455553
No 234
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=31.25 E-value=30 Score=39.57 Aligned_cols=47 Identities=6% Similarity=0.111 Sum_probs=31.3
Q ss_pred CcccccceEEEEccccccCCCchHHHHHHHHH-Hcc--cCeEEEEeCCCCCCC
Q 001098 682 PMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLT--ASNRWLLTGTPTPNT 731 (1158)
Q Consensus 682 ~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~-~L~--a~~RwlLTGTPiqN~ 731 (1158)
.+.....+.+|+||+|.+++.. ..+.++. .+. ...++++++||-..+
T Consensus 268 slrG~~~~~viiDE~a~~~~~~---el~~al~~~ls~~~~~kiiiiSTP~g~n 317 (385)
T 2o0j_A 268 AVRGNSFAMIYIEDCAFIPNFH---DSWLAIQPVISSGRRSKIIITTTPNGLN 317 (385)
T ss_dssp HHHTSCCSEEEEESGGGSTTHH---HHHHHHHHHHHSTTCCEEEEEECCCSSS
T ss_pred CccCCCCCEEEechhhhcCCCH---HHHHHHHHHhhcCCCCcEEEEeCCCCch
Confidence 4557778999999999999721 2222222 222 346889999997654
No 235
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=30.84 E-value=23 Score=46.40 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=27.9
Q ss_pred CceeccCCCCchhHHHHHHHHhh----CCCcccCCcc-cccccee
Q 001098 226 GGMFCDEPGLGKTITALSLILKT----QGTLADPPDG-VKIIWCT 265 (1158)
Q Consensus 226 GGILaDeMGLGKTl~~LalI~~~----~~~~~~~P~~-~~~~W~~ 265 (1158)
..|+|-+.|-|||+..+-.|+.. ...++++|.- +..||..
T Consensus 201 dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~ 245 (1108)
T 3l9o_A 201 SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYR 245 (1108)
T ss_dssp CEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHH
Confidence 46899999999999877666532 3455666764 5566664
No 236
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=29.93 E-value=38 Score=27.47 Aligned_cols=34 Identities=9% Similarity=-0.023 Sum_probs=29.0
Q ss_pred ccCCccccccccCCCceeEEecccccccccCCCC
Q 001098 187 VLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPT 220 (1158)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 220 (1158)
..+.+-|+...+.+|+.||+|..+...++..|..
T Consensus 13 ~~LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~ 46 (57)
T 2ysd_A 13 GPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRC 46 (57)
T ss_dssp CSCCSSEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCCCcCcEEEECCCCCEEEEECCCCcEecCCCCC
Confidence 3466789988888999999999999999988764
No 237
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=29.73 E-value=69 Score=28.00 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=15.7
Q ss_pred eEEEEeccHHHHHHHHHHHHHCCCeEE
Q 001098 993 KVIIFSQFLEHIHVIEQQLTVAGIKFA 1019 (1158)
Q Consensus 993 KVLVFSqf~~~ld~L~~~L~~~gi~~~ 1019 (1158)
+++|+..-....+.+...|...|+.+.
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~ 29 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVI 29 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEE
Confidence 556666666666666666665555443
No 238
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=28.82 E-value=1e+02 Score=36.70 Aligned_cols=85 Identities=9% Similarity=0.089 Sum_probs=53.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeC-CCCHHHHHHHHHHhccCCCeeEEEEe--CccccccCcc-----cC
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYS-PMHSSNKIKSLDMFRHDASCLALLMD--GSASLGLDLS-----FV 1061 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG-~t~~~~R~~~i~~F~~~~~~~VLL~s--~agg~GLNLt-----~A 1061 (1158)
.+.++|||......++.+.+ ..+++.. +.| +++ +.++++.|+.+++ -||+++ ..-.+|+|+. .+
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~---~~~~~v~-~q~~~~~---~~~~~~~~~~~~~-~vl~~v~gg~~~EGiD~~d~~g~~l 463 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMS---RISLPKY-VESEDSS---VEDLYSAISANNK-VLIGSVGKGKLAEGIELRNNDRSLI 463 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHT---TCCSSEE-ECCSSCC---HHHHHHHTTSSSS-CEEEEESSCCSCCSSCCEETTEESE
T ss_pred CCCCEEEEecCHHHHHHHHH---hcCCcEE-EcCCCCC---HHHHHHHHHhcCC-eEEEEEecceecccccccccCCcce
Confidence 34477777777666666665 2344333 333 223 5678899964433 577776 5789999999 47
Q ss_pred CEEEEECCCCCcChHHHHHhcc
Q 001098 1062 TRVFLMEPIWDRSMEEQVISRA 1083 (1158)
Q Consensus 1062 n~VI~~Dp~WNP~~e~QAigRa 1083 (1158)
..||+.-.|+-+. +-....|.
T Consensus 464 ~~viI~~lPfp~~-dp~~~ar~ 484 (551)
T 3crv_A 464 SDVVIVGIPYPPP-DDYLKILA 484 (551)
T ss_dssp EEEEEESCCCCCC-SHHHHHHH
T ss_pred eEEEEEcCCCCCC-CHHHHHHH
Confidence 8889888887544 43444444
No 239
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=28.52 E-value=96 Score=29.18 Aligned_cols=34 Identities=12% Similarity=-0.008 Sum_probs=31.0
Q ss_pred HHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhc
Q 001098 1005 HVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFR 1038 (1158)
Q Consensus 1005 d~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~ 1038 (1158)
..+...|+..||.|..++=++..+.|..++++.+
T Consensus 20 ~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 20 QDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp HHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 6788899999999999999889999999999984
No 240
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=28.45 E-value=1.2e+02 Score=27.59 Aligned_cols=59 Identities=7% Similarity=-0.044 Sum_probs=39.1
Q ss_pred CCCeEEEEec------cHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEE
Q 001098 990 LPDKVIIFSQ------FLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLM 1048 (1158)
Q Consensus 990 ~~~KVLVFSq------f~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~ 1048 (1158)
...+|+||+. +=..-....+.|...|++|..++=....+.|..+.+.-....-+.|++-
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi~ 78 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVS 78 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEET
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEEC
Confidence 5679999995 4456677888999999999888765555555555443333333455553
No 241
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=27.60 E-value=32 Score=29.39 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=26.4
Q ss_pred CCccccccccCCCceeEEecccccccccCCC
Q 001098 189 RHPLYIDLATEDGFYFYVNTVSGDIATGTAP 219 (1158)
Q Consensus 189 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (1158)
..+.|....+.+|+.+|+|..++..+...|.
T Consensus 44 ~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~ 74 (75)
T 2jxw_A 44 VKTVWVEGLSEDGFTYYYNTETGESRWEKPD 74 (75)
T ss_dssp CCCSEEEEEETTTEEEEEETTTTEEESSCCC
T ss_pred CCccEEEEECCCCCEEEEECcCCCEeccCcC
Confidence 3457999898999999999999988887764
No 242
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=27.44 E-value=54 Score=35.94 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=23.2
Q ss_pred ceEEEEccccccCCCc-hHHHHHHHHHH-cccCeEEEEeCC
Q 001098 688 WLRVMLDEGHTLGSSL-NLTNKLQMAIS-LTASNRWLLTGT 726 (1158)
Q Consensus 688 w~rVIlDEAH~ikn~~-s~t~~~~~~~~-L~a~~RwlLTGT 726 (1158)
...+++||+|.+.... ++......+.. .....++++|+|
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4689999999997531 11222222222 234567888887
No 243
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=25.74 E-value=35 Score=30.52 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=28.6
Q ss_pred cCCccccccccCCCceeEEecccccccccCCCC
Q 001098 188 LRHPLYIDLATEDGFYFYVNTVSGDIATGTAPT 220 (1158)
Q Consensus 188 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 220 (1158)
.+.+.|....+.+|+.+|+|..++.-+.+.|..
T Consensus 11 ~lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~ 43 (92)
T 2l5f_A 11 GAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 43 (92)
T ss_dssp BTTTTEEEEECTTSCEEEEETTTTEEESSCSGG
T ss_pred CCCCCcEEEEcCCCCEEEEECCCCceecccCcc
Confidence 455779999989999999999999999988763
No 244
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=25.48 E-value=2.8e+02 Score=25.16 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=47.6
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe-C-ccccccCcc-------
Q 001098 989 ALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-G-SASLGLDLS------- 1059 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s-~-agg~GLNLt------- 1059 (1158)
....+|||...-....+.+...|...|+.+.... +. .++++..... .+.++|+. . .+..|+.+-
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~---~~---~~a~~~l~~~-~~dlii~d~~l~~~~g~~~~~~l~~~~ 77 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISAD---SG---GQCIDLLKKG-FSGVVLLDIMMPGMDGWDTIRAILDNS 77 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEES---SH---HHHHHHHHTC-CCEEEEEESCCSSSCHHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeC---CH---HHHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 3567899999999999999999999888755442 22 2344444433 24566665 2 344555431
Q ss_pred --cCCEEEEECCCCCcC
Q 001098 1060 --FVTRVFLMEPIWDRS 1074 (1158)
Q Consensus 1060 --~An~VI~~Dp~WNP~ 1074 (1158)
..-.||++....++.
T Consensus 78 ~~~~~pii~~s~~~~~~ 94 (142)
T 3cg4_A 78 LEQGIAIVMLTAKNAPD 94 (142)
T ss_dssp CCTTEEEEEEECTTCCC
T ss_pred ccCCCCEEEEECCCCHH
Confidence 123466665555543
No 245
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=24.98 E-value=1.8e+02 Score=27.01 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=40.2
Q ss_pred CCCeEEEEec------cHHHHHHHHHHHHHCCCe---EEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe
Q 001098 990 LPDKVIIFSQ------FLEHIHVIEQQLTVAGIK---FAGMYSPMHSSNKIKSLDMFRHDASCLALLMD 1049 (1158)
Q Consensus 990 ~~~KVLVFSq------f~~~ld~L~~~L~~~gi~---~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s 1049 (1158)
..++|+||+. +=..-..+.+.|...|++ |..++=....+.|+.+.+......-+.|+|-.
T Consensus 14 ~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vfI~g 82 (121)
T 3gx8_A 14 ESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYVNK 82 (121)
T ss_dssp HSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEEETT
T ss_pred ccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEEECC
Confidence 4579999998 455677888889999998 87777655555555554444333334555533
No 246
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=24.86 E-value=63 Score=24.71 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=27.3
Q ss_pred cccCCccccccccCCCceeEEecccccccccCCC
Q 001098 186 EVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAP 219 (1158)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (1158)
...+++-|+...+.+|+.+|+|..+...+...|.
T Consensus 6 ~~~LP~GWe~~~~~~gr~y~~n~~t~~t~W~dPr 39 (46)
T 1jmq_A 6 DVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPR 39 (46)
T ss_dssp SCCCCTTBCCBCCSSCCCBEEETTTTEEESSCTT
T ss_pred CCCCCcCcEEEEcCCCceEEEEecCCceeecCCC
Confidence 3456778999888999999999999877666654
No 247
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=24.50 E-value=1.9e+02 Score=26.72 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=39.6
Q ss_pred CCCeEEEEec------cHHHHHHHHHHHHHCCCe-EEEEeCCCCHHHHHHHHHHhccCCCeeEEEE
Q 001098 990 LPDKVIIFSQ------FLEHIHVIEQQLTVAGIK-FAGMYSPMHSSNKIKSLDMFRHDASCLALLM 1048 (1158)
Q Consensus 990 ~~~KVLVFSq------f~~~ld~L~~~L~~~gi~-~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~ 1048 (1158)
..++|+||+. +=..-..+.+.|+..|++ |..++=....+.++.+.+......-+.|++-
T Consensus 18 ~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~tvP~vfI~ 83 (118)
T 2wem_A 18 KKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLN 83 (118)
T ss_dssp HHSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSSCEEEET
T ss_pred ccCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCCCcCeEEEC
Confidence 3469999998 556777888899999995 8888765555555555444333333445543
No 248
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=24.23 E-value=1e+02 Score=27.26 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=28.7
Q ss_pred cCCccccccccCCCceeEEecccccccccCCCC
Q 001098 188 LRHPLYIDLATEDGFYFYVNTVSGDIATGTAPT 220 (1158)
Q Consensus 188 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 220 (1158)
.+.+-|+...+.+|+.+|+|..++.-+...|..
T Consensus 9 ~LP~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~ 41 (90)
T 2kxq_A 9 DLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRV 41 (90)
T ss_dssp SCCSSCEEEEETTTEEEEEETTTTEEESSCSSS
T ss_pred CCCCCcEEEECCCCCEEEEECCCCeEeeecccc
Confidence 466789988889999999999999999888764
No 249
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=24.09 E-value=1.6e+02 Score=26.36 Aligned_cols=58 Identities=9% Similarity=0.017 Sum_probs=38.8
Q ss_pred CCCeEEEEec------cHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEE
Q 001098 990 LPDKVIIFSQ------FLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALL 1047 (1158)
Q Consensus 990 ~~~KVLVFSq------f~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL 1047 (1158)
...+|+||+. +=..-..+...|...|++|..++=......+..+.+.+....-+.|++
T Consensus 13 ~~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~ifi 76 (109)
T 1wik_A 13 NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYV 76 (109)
T ss_dssp TTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEEC
T ss_pred ccCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 3467999988 223456777888999999999987776666666665554332234443
No 250
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=23.64 E-value=2.3e+02 Score=31.99 Aligned_cols=72 Identities=10% Similarity=0.034 Sum_probs=50.2
Q ss_pred ccccCCCCeEEEEecc-------HHHHHHHHHHHHHCCCeEEEEe------C--CCCHHHHHHHHHHhccCCCeeEEEEe
Q 001098 985 ESNKALPDKVIIFSQF-------LEHIHVIEQQLTVAGIKFAGMY------S--PMHSSNKIKSLDMFRHDASCLALLMD 1049 (1158)
Q Consensus 985 ~~~~~~~~KVLVFSqf-------~~~ld~L~~~L~~~gi~~~~ld------G--~t~~~~R~~~i~~F~~~~~~~VLL~s 1049 (1158)
.....+|++|=|++.. ...++...+.|+..|+++..-. | +-+.++|.+-+.++-.|++++.+++.
T Consensus 37 P~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~ 116 (371)
T 3tla_A 37 AAPLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMST 116 (371)
T ss_dssp CCCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEES
T ss_pred CCCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 3456789999999875 2456677778898999865421 1 23567888777776678888888776
Q ss_pred CccccccC
Q 001098 1050 GSASLGLD 1057 (1158)
Q Consensus 1050 ~agg~GLN 1057 (1158)
+ ||.|.+
T Consensus 117 r-GGyga~ 123 (371)
T 3tla_A 117 I-GGDNSN 123 (371)
T ss_dssp C-CCSCGG
T ss_pred c-ccccHH
Confidence 5 555543
No 251
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=23.63 E-value=28 Score=43.22 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=25.9
Q ss_pred ceeccCCCCchhHHHHHHHH-----hhCCCcccCCc-ccccccee
Q 001098 227 GMFCDEPGLGKTITALSLIL-----KTQGTLADPPD-GVKIIWCT 265 (1158)
Q Consensus 227 GILaDeMGLGKTl~~LalI~-----~~~~~~~~~P~-~~~~~W~~ 265 (1158)
.|++-+.|-|||+++.-.++ .....++++|. .+..||..
T Consensus 42 ~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~ 86 (720)
T 2zj8_A 42 ALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQ 86 (720)
T ss_dssp EEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHH
T ss_pred EEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHH
Confidence 68999999999998854444 12345556676 45555554
No 252
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=23.07 E-value=2.2e+02 Score=26.57 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=40.7
Q ss_pred CCCeEEEEec------cHHHHHHHHHHHHHCCC-eEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe-Cccc
Q 001098 990 LPDKVIIFSQ------FLEHIHVIEQQLTVAGI-KFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GSAS 1053 (1158)
Q Consensus 990 ~~~KVLVFSq------f~~~ld~L~~~L~~~gi-~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s-~agg 1053 (1158)
..++|+||+- +=.+-..+.+.|...|+ +|..++=....+-|+.+.+.-+...-+.|+|-- ..||
T Consensus 18 ~~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIFI~g~~IGG 89 (118)
T 2wul_A 18 KKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGG 89 (118)
T ss_dssp HHSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHTCCSSCEEEETTEEEEC
T ss_pred hcCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhccCCCCCeEeECCEEECC
Confidence 3479999975 33456667778888898 588777665666565555444433346677654 2444
No 253
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=22.92 E-value=2e+02 Score=25.01 Aligned_cols=27 Identities=7% Similarity=0.283 Sum_probs=17.3
Q ss_pred eEEEEeccHHHHHHHHHHHHHCCCeEE
Q 001098 993 KVIIFSQFLEHIHVIEQQLTVAGIKFA 1019 (1158)
Q Consensus 993 KVLVFSqf~~~ld~L~~~L~~~gi~~~ 1019 (1158)
+++|...-....+.+...|...|+.+.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~ 29 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEID 29 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEE
Confidence 566666666666666666666666543
No 254
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=21.78 E-value=52 Score=27.93 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=26.4
Q ss_pred ccccccccCCCceeEEecccccccccCCCC
Q 001098 191 PLYIDLATEDGFYFYVNTVSGDIATGTAPT 220 (1158)
Q Consensus 191 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 220 (1158)
+-|....+.+|+.+|+|..++.-+...|..
T Consensus 43 ~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~ 72 (75)
T 1o6w_A 43 NGWKAAKTADGKVYYYNPTTRETSWTIPAF 72 (75)
T ss_dssp HTCEEEECTTCCEEEEETTTTEEESSCCCC
T ss_pred CeEEEEECCCCCEEEEECCCCCEECCCCCC
Confidence 568888899999999999999998888764
No 255
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=21.68 E-value=58 Score=28.89 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=28.1
Q ss_pred cCCccccccccCCCceeEEecccccccccCCCC
Q 001098 188 LRHPLYIDLATEDGFYFYVNTVSGDIATGTAPT 220 (1158)
Q Consensus 188 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 220 (1158)
.+.+-|+...+.+|+.||+|..++..+...|..
T Consensus 55 ~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~ 87 (90)
T 2kxq_A 55 PLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 87 (90)
T ss_dssp CCCSSCCEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred ccCCCceEEECCCCCEEEEECCCCcEecCCCCc
Confidence 455789999999999999999999888887764
No 256
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=21.35 E-value=3.5e+02 Score=24.24 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=40.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe-C-ccccccC
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-G-SASLGLD 1057 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s-~-agg~GLN 1057 (1158)
...+|||...-....+.+...|...|+.+..... .. +++..+.....+.++|+. . .+..|+.
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~---~~---~a~~~~~~~~~~dlvi~D~~l~~~~g~~ 69 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADG---AE---EARLYLHYQKRIGLMITDLRMQPESGLD 69 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESS---HH---HHHHHHHHCTTEEEEEECSCCSSSCHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCC---HH---HHHHHHHhCCCCcEEEEeccCCCCCHHH
Confidence 4579999999999999999999999988765532 22 333444434345666665 2 3444544
No 257
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=21.32 E-value=2.6e+02 Score=25.51 Aligned_cols=107 Identities=11% Similarity=0.100 Sum_probs=62.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe-Cc--cccccCcc------c
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GS--ASLGLDLS------F 1060 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s-~a--gg~GLNLt------~ 1060 (1158)
.+.+|+|..........+...|...|+.+.... +. .++++.+..+..+.++|+. .. +..|+.+- .
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~---~~---~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~ 77 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIAL---TG---EAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQIS 77 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEES---SH---HHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEec---Ch---HHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCC
Confidence 356899999999999999999999998766443 22 3455555543345566666 32 35666543 1
Q ss_pred CCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 001098 1061 VTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQ 1112 (1158)
Q Consensus 1061 An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~ 1112 (1158)
.-.||++...-++... .++.+.| +..++.+-.-.+.+...+.
T Consensus 78 ~~~ii~ls~~~~~~~~----~~~~~~g------~~~~l~KP~~~~~l~~~i~ 119 (140)
T 3h5i_A 78 ELPVVFLTAHTEPAVV----EKIRSVT------AYGYVMKSATEQVLITIVE 119 (140)
T ss_dssp CCCEEEEESSSSCCCC----GGGGGSC------EEEEEETTCCHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHH----HHHHhCC------CcEEEeCCCCHHHHHHHHH
Confidence 2346676665555443 3344445 3344555432334444433
No 258
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=21.25 E-value=1.7e+02 Score=36.62 Aligned_cols=77 Identities=9% Similarity=-0.081 Sum_probs=55.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHH----CCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeC-ccccccCcccCCEE
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTV----AGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDG-SASLGLDLSFVTRV 1064 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~----~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~-agg~GLNLt~An~V 1064 (1158)
.+.+++|.+.......-+.+.+.+ .|+++..++|+++..+|...++...++ .+.|+++|. .....+++.....|
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g-~~~IvVgT~~ll~~~~~~~~l~lV 494 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNG-QIDVVIGTHALIQEDVHFKNLGLV 494 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSS-CCCEEEECTTHHHHCCCCSCCCEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcC-CCCEEEECHHHHhhhhhccCCceE
Confidence 467999999998876655555543 489999999999999999998888765 356777773 33344555555555
Q ss_pred EEE
Q 001098 1065 FLM 1067 (1158)
Q Consensus 1065 I~~ 1067 (1158)
|+=
T Consensus 495 VID 497 (780)
T 1gm5_A 495 IID 497 (780)
T ss_dssp EEE
T ss_pred Eec
Confidence 543
No 259
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=21.25 E-value=1.7e+02 Score=25.97 Aligned_cols=57 Identities=9% Similarity=0.023 Sum_probs=38.9
Q ss_pred CCeEEEEec------cHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEE
Q 001098 991 PDKVIIFSQ------FLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALL 1047 (1158)
Q Consensus 991 ~~KVLVFSq------f~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL 1047 (1158)
..+|+||+. +=..-..+...|...|++|..++=......+..+.+.+....-+.|++
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~i 78 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLYV 78 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEEE
Confidence 347999985 445667788888889999988887666666666666664433334443
No 260
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=20.58 E-value=44 Score=28.53 Aligned_cols=29 Identities=17% Similarity=0.389 Sum_probs=26.0
Q ss_pred ccccccccCCCceeEEecccccccccCCC
Q 001098 191 PLYIDLATEDGFYFYVNTVSGDIATGTAP 219 (1158)
Q Consensus 191 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (1158)
..|....+.+|+.+|+|..++.-+...|.
T Consensus 5 ~~W~e~~~~~G~~YYyN~~T~~s~We~P~ 33 (75)
T 2jxw_A 5 GRWVEGITSEGYHYYYDLISGASQWEKPE 33 (75)
T ss_dssp CCEEEEEETTTEEEEEETTTTEEECSCCS
T ss_pred CCcEEEECCCCCEEEEECCCCCEeecCCC
Confidence 46888888899999999999999998876
No 261
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=20.36 E-value=27 Score=37.45 Aligned_cols=13 Identities=15% Similarity=0.125 Sum_probs=10.9
Q ss_pred cceEEEEcccccc
Q 001098 687 HWLRVMLDEGHTL 699 (1158)
Q Consensus 687 ~w~rVIlDEAH~i 699 (1158)
....|++||+|.+
T Consensus 110 ~~~vl~iDEid~l 122 (285)
T 3h4m_A 110 APSIIFIDEIDAI 122 (285)
T ss_dssp CSEEEEEETTHHH
T ss_pred CCeEEEEECHHHh
Confidence 3468999999998
No 262
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=20.35 E-value=32 Score=26.89 Aligned_cols=31 Identities=23% Similarity=0.604 Sum_probs=22.3
Q ss_pred CCceeeccchhhhhhcccccc--cC-CCccceec
Q 001098 432 NETWVQCDACHKWRKLLDASV--AD-ATAAWFCS 462 (1158)
Q Consensus 432 ~~~wvqc~~c~kwr~~~~~~~--~~-~~~~w~c~ 462 (1158)
.+.-|.||.|.+|-++..-.. .. ....|||.
T Consensus 12 ~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~ 45 (51)
T 1f62_A 12 DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCP 45 (51)
T ss_dssp CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCT
T ss_pred CCCEEECCCCChhhCcccCCCCcCCCCCCcEECc
Confidence 467899999999988876421 11 24589995
No 263
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=20.18 E-value=27 Score=43.21 Aligned_cols=40 Identities=15% Similarity=0.028 Sum_probs=27.8
Q ss_pred CceeccCCCCchhHHHHHHHHh----hCCCcccCCcc-cccccee
Q 001098 226 GGMFCDEPGLGKTITALSLILK----TQGTLADPPDG-VKIIWCT 265 (1158)
Q Consensus 226 GGILaDeMGLGKTl~~LalI~~----~~~~~~~~P~~-~~~~W~~ 265 (1158)
-.+++-+.|-|||+++.-.|+. ....+.++|.- +..||..
T Consensus 42 ~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~ 86 (702)
T 2p6r_A 42 NLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYE 86 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHH
T ss_pred cEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHH
Confidence 3689999999999998666652 23455566766 5556654
No 264
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=20.17 E-value=2.2e+02 Score=25.85 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=39.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe-C-ccccccCc
Q 001098 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-G-SASLGLDL 1058 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s-~-agg~GLNL 1058 (1158)
...+|||...-......+...|...|+.+.... +.. ++++.+... .+.++|+. . .+..|+.+
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~---~~~---~a~~~l~~~-~~dlvi~d~~l~~~~g~~~ 68 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVH---SAA---QALEQVARR-PYAAMTVDLNLPDQDGVSL 68 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEEC---SHH---HHHHHHHHS-CCSEEEECSCCSSSCHHHH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEEC---CHH---HHHHHHHhC-CCCEEEEeCCCCCCCHHHH
Confidence 456899999999999999999999998854443 233 334444332 24466655 2 44556543
No 265
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=20.09 E-value=52 Score=26.15 Aligned_cols=32 Identities=9% Similarity=0.046 Sum_probs=25.8
Q ss_pred CCcccccccc-CCCceeEEecccccccccCCCC
Q 001098 189 RHPLYIDLAT-EDGFYFYVNTVSGDIATGTAPT 220 (1158)
Q Consensus 189 ~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~ 220 (1158)
+.+-|....+ ..|+.+|+|..|++-+.+.|..
T Consensus 11 LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~ 43 (52)
T 2jx8_A 11 VHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVL 43 (52)
T ss_dssp HHHTCCEEEETTTTEEEEEETTTTEEESSCCCC
T ss_pred CCcCcEEEEccccCCEEEEECCCCCEEeCCCCC
Confidence 3456887665 5799999999999999988764
Done!