Your job contains 1 sequence.
>001100
MRLAMRRSLFSLPLATATTTSTLPTSSSTRSAVVLRPFMATHRAFWNHQGIQLPPYPLIG
SGLRFRKGRVTSAITISYPKVACDFFLFSGRTDCSKGALSIHSHLKPRSSFCYMPLDNGI
RFSSLNCEPFSKRCFSQLSRGKIGIEKIGVSDARSGSGGGKSWFNKHRKRNNAVSARGKS
NATSSSISVSEDVNAVNSTSEQLVGDGVEGAKLGSSVSNTKQNSKPRARQQQQSRSKKKK
EQLSATVASEQASVGKSCKSVSQAKSSKCKSEQCADLTSEKTSPGNTLEQPLASSALTKQ
QSKKNSGNCGRKKKSAKATKASLQRQTSEEMVIVPRGQNTQNPLYPPSGKSVVVVESVTK
AKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSG
AENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREI
DANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQ
EYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVI
KNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYM
RTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPA
MLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQ
AAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSL
VKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSF
TADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASL
PNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVD
EPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL
RYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKDVR
RCGRPKGKPKREEALEAM
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001100
(1158 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|SPO_3079 - symbol:SPO_3079 "DNA topoisomerase I"... 1397 1.4e-144 2
TIGR_CMR|CBU_2000 - symbol:CBU_2000 "DNA topoisomerase I"... 1253 1.2e-134 2
TIGR_CMR|NSE_0594 - symbol:NSE_0594 "DNA topoisomerase I"... 1096 2.8e-120 2
TIGR_CMR|ECH_0750 - symbol:ECH_0750 "DNA topoisomerase I"... 1063 5.0e-108 2
TIGR_CMR|CJE_1854 - symbol:CJE_1854 "DNA topoisomerase I"... 729 4.6e-106 3
TIGR_CMR|APH_0597 - symbol:APH_0597 "DNA topoisomerase I"... 967 1.2e-104 2
TIGR_CMR|DET_0717 - symbol:DET_0717 "DNA topoisomerase I"... 947 2.9e-99 2
TIGR_CMR|GSU_2549 - symbol:GSU_2549 "DNA topoisomerase I"... 876 1.3e-94 2
UNIPROTKB|P0A620 - symbol:topA "DNA topoisomerase 1" spec... 816 4.9e-91 2
TIGR_CMR|BA_3971 - symbol:BA_3971 "DNA topoisomerase I" s... 747 5.3e-79 2
TIGR_CMR|CHY_1794 - symbol:CHY_1794 "DNA topoisomerase I"... 738 1.6e-78 2
TIGR_CMR|SO_2705 - symbol:SO_2705 "DNA topoisomerase I" s... 424 2.7e-75 3
UNIPROTKB|P06612 - symbol:topA species:83333 "Escherichia... 415 2.7e-71 3
UNIPROTKB|Q9KRB2 - symbol:topA "DNA topoisomerase 1" spec... 371 5.0e-61 3
TIGR_CMR|VC_1730 - symbol:VC_1730 "DNA topoisomerase I" s... 371 5.0e-61 3
TIGR_CMR|CPS_1197 - symbol:CPS_1197 "DNA topoisomerase I"... 370 2.0e-60 3
UNIPROTKB|Q2GG88 - symbol:ECH_0746 "Topoisomerase DNA-bin... 316 4.7e-27 1
TIGR_CMR|ECH_0746 - symbol:ECH_0746 "topoisomerase DNA-bi... 316 4.7e-27 1
TIGR_CMR|BA_0375 - symbol:BA_0375 "DNA topoisomerase III"... 205 6.2e-22 2
ZFIN|ZDB-GENE-071212-2 - symbol:top3a "topoisomerase (DNA... 205 1.8e-20 2
TIGR_CMR|SO_3061 - symbol:SO_3061 "DNA topoisomerase III"... 275 5.6e-19 2
UNIPROTKB|Q9KQF5 - symbol:topB "DNA topoisomerase 3" spec... 263 6.2e-19 1
TIGR_CMR|VC_2043 - symbol:VC_2043 "DNA topoisomerase III"... 263 6.2e-19 1
UNIPROTKB|E2RIS5 - symbol:TOP3A "DNA topoisomerase" speci... 174 3.2e-18 2
FB|FBgn0040268 - symbol:Top3alpha "Topoisomerase 3alpha" ... 200 3.9e-18 2
UNIPROTKB|P14294 - symbol:topB species:83333 "Escherichia... 254 6.0e-18 1
TIGR_CMR|CPS_4792 - symbol:CPS_4792 "DNA topoisomerase II... 252 9.8e-18 1
UNIPROTKB|F1P1F3 - symbol:TOP3A "DNA topoisomerase" speci... 168 1.5e-17 2
UNIPROTKB|F1MGY1 - symbol:TOP3A "DNA topoisomerase" speci... 168 2.3e-17 2
UNIPROTKB|B4DK80 - symbol:TOP3A "DNA topoisomerase" speci... 162 2.1e-16 2
UNIPROTKB|Q13472 - symbol:TOP3A "DNA topoisomerase 3-alph... 162 2.7e-16 2
RGD|1309320 - symbol:Top3a "topoisomerase (DNA) III alpha... 162 3.8e-16 2
WB|WBGene00006596 - symbol:top-3 species:6239 "Caenorhabd... 206 4.7e-16 2
TAIR|locus:2160841 - symbol:TOP3A "topoisomerase 3alpha" ... 187 6.1e-16 2
MGI|MGI:1197527 - symbol:Top3a "topoisomerase (DNA) III a... 160 9.0e-16 2
UNIPROTKB|E1BQG8 - symbol:TOP3B "DNA topoisomerase" speci... 150 1.1e-12 2
UNIPROTKB|Q5ZK71 - symbol:TOP3B "DNA topoisomerase" speci... 150 2.8e-12 2
WB|WBGene00012995 - symbol:Y48C3A.14 species:6239 "Caenor... 145 4.8e-12 2
UNIPROTKB|F1RL05 - symbol:TOP3B "DNA topoisomerase" speci... 145 9.5e-12 2
UNIPROTKB|O95985 - symbol:TOP3B "DNA topoisomerase 3-beta... 141 9.8e-12 2
TAIR|locus:2045517 - symbol:AT2G32000 species:3702 "Arabi... 152 1.2e-11 2
GENEDB_PFALCIPARUM|PF13_0251 - symbol:PF13_0251 "DNA topo... 120 1.5e-11 3
UNIPROTKB|Q8IDM7 - symbol:PF13_0251 "DNA topoisomerase II... 120 1.5e-11 3
MGI|MGI:1333803 - symbol:Top3b "topoisomerase (DNA) III b... 140 2.0e-11 2
RGD|1309468 - symbol:Top3b "topoisomerase (DNA) III beta"... 142 3.2e-11 2
ZFIN|ZDB-GENE-070705-37 - symbol:top3b "topoisomerase (DN... 155 3.7e-11 2
UNIPROTKB|E2R770 - symbol:TOP3B "DNA topoisomerase" speci... 146 4.0e-11 2
POMBASE|SPBC16G5.12c - symbol:top3 "DNA topoisomerase III... 198 1.1e-10 2
TIGR_CMR|BA_1905 - symbol:BA_1905 "DNA topoisomerase III"... 186 1.6e-10 1
ASPGD|ASPL0000072189 - symbol:AN4555 species:162425 "Emer... 146 2.0e-09 2
DICTYBASE|DDB_G0275257 - symbol:top3 "DNA topoisomerase I... 154 1.3e-08 2
CGD|CAL0003329 - symbol:orf19.5934 species:5476 "Candida ... 151 8.1e-07 1
SGD|S000004224 - symbol:TOP3 "DNA Topoisomerase III" spec... 116 1.1e-06 2
UNIPROTKB|H7BZN5 - symbol:TOP3A "DNA topoisomerase" speci... 142 3.3e-06 1
FB|FBgn0026015 - symbol:Top3beta "Topoisomerase 3beta" sp... 111 4.5e-06 2
UNIPROTKB|H0Y6W0 - symbol:TOP3B "DNA topoisomerase" speci... 111 5.2e-06 2
UNIPROTKB|B4DSJ0 - symbol:TOP3A "cDNA FLJ56242, highly si... 135 3.4e-05 1
UNIPROTKB|C9JEI7 - symbol:TOP3B "DNA topoisomerase 3-beta... 125 8.6e-05 1
>TIGR_CMR|SPO_3079 [details] [associations]
symbol:SPO_3079 "DNA topoisomerase I" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003917 "DNA topoisomerase type I activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006265 SMART:SM00493
GO:GO:0003917 KO:K03168 ProtClustDB:PRK07561 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 HOGENOM:HOG000004020 OMA:GKYGPYL
RefSeq:YP_168282.1 ProteinModelPortal:Q5LNX4 GeneID:3196046
KEGG:sil:SPO3079 PATRIC:23379603 Uniprot:Q5LNX4
Length = 880
Score = 1397 (496.8 bits), Expect = 1.4e-144, Sum P(2) = 1.4e-144
Identities = 338/809 (41%), Positives = 466/809 (57%)
Query: 364 IQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAEN 423
I YLG Y VL SYGHVRDL A+ GSV P+ DF M WEV + + H+K+I AL+
Sbjct: 15 INKYLGSDYTVLASYGHVRDLPAKDGSVDPEHDFDMTWEVAADSRKHVKAIADALAEDNE 74
Query: 424 LILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDAN 483
LILA+DPDREGEAI+WH+ E L ++ ++ + V+RV F+ IT+ ++ A+Q R++D
Sbjct: 75 LILATDPDREGEAISWHLQEALTKRRSIKKGTAVSRVTFNAITKDAVTKAMQNPRQVDMP 134
Query: 484 LVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYW 543
LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +REMEI+ FKP EYW
Sbjct: 135 LVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVEREMEIEAFKPVEYW 194
Query: 544 TVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNS 603
+V+A+L+ + A L +L+++ I + T+A+ Q I S I++
Sbjct: 195 SVKALLETPRGQV-----YEARLVTLAGNKLDKMDISNATQAELAVQAITSRALS-IQSV 248
Query: 604 KRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRT 662
+ +NP+ P++TSTLQQ+A+ K A + M AQ+LYE AG ITYMRT
Sbjct: 249 EAKPAARNPSAPFMTSTLQQEASRKFGMGARHCMSAAQRLYE---------AGHITYMRT 299
Query: 663 DGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAML 722
DG+ ++ EA R I +R+G+ + P+ PR Y K KNAQEAHE IRPTD+R+ A L
Sbjct: 300 DGIDMAPEAVMATRDAIADRFGAEYVPDS-PRMYKNKAKNAQEAHECIRPTDMRKDAAAL 358
Query: 723 SGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAA 782
L DED +LY LIW RT+ACQM A + + V+IG+AD + R++ V F GF
Sbjct: 359 K-LKDEDQRRLYDLIWKRTIACQMAAARLERTTVEIGSADGQVGLRATGQVVLFDGFLRV 417
Query: 783 YE----DVDAGAIRYKENEENDRHEAFAILN-----SLKTGD-PLYLG-----EVELK-- 825
YE DV+ + FA + + TGD PL G E L
Sbjct: 418 YEEGRDDVENDEDKRLPQISMGEKAVFAKTSLADQFARATGDTPLTEGAKIAKEAILSEN 477
Query: 826 ------QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEF 879
QHHTQPP RY+E +LVK++EELGIGRPSTYAS + +QDR YV L PE
Sbjct: 478 EAVLALQHHTQPPPRYTEATLVKRMEELGIGRPSTYASVITTIQDREYVRKDKNRLIPEE 537
Query: 880 RGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSL 939
+GR+V+ FL ++F + Y FTA++E +LD+VSAG ++K LL +W FS+ + L
Sbjct: 538 KGRIVTIFLLNFFRQYVGYEFTANLEEQLDDVSAGSRDYKDLLGRFWRDFSAAISETSEL 597
Query: 940 HIHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPR 995
I +V L++ L+ P +D R CP CG G L K SR G F+GC +P
Sbjct: 598 RISEVLDKLDEALAPQLYP--PREDGSDPRICPKCGTGQLHLKTSRTGG--FVGCGNYPE 653
Query: 996 CNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTG 1054
C Y + + GD D D+ +R L+G +++ LK+G +G YVQ GE
Sbjct: 654 CRY-TRPISGDAD--DSAER--------LLGEDGG--DEIWLKAGRFGPYVQRGEISEEN 700
Query: 1055 YLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIA 1114
P RAS+ + + LE AL LL P +G HP+ G I R G + H+
Sbjct: 701 KKPPRASLPRGWSAEDLDLEKALVLLSLPRQIGQHPEGGM-ISSNFGRFGPYLMHQLPDE 759
Query: 1115 SVP--KNMK-PNDVT---LEKALEFLSGK 1137
+ P N+K P+DV + +A+E L+ K
Sbjct: 760 AKPIYANLKDPSDVFEIGMNRAVELLAEK 788
Score = 37 (18.1 bits), Expect = 1.4e-144, Sum P(2) = 1.4e-144
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 1090 PKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALE 1132
PKD + + + A + + T K P T +KA E
Sbjct: 837 PKDVEAADVTMEMAVALIAEKSTKKGTKKKAAPRKKTTKKAAE 879
>TIGR_CMR|CBU_2000 [details] [associations]
symbol:CBU_2000 "DNA topoisomerase I" species:227377
"Coxiella burnetii RSA 493" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003917 "DNA topoisomerase type I activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006265 SMART:SM00493
GO:GO:0003917 HOGENOM:HOG000004018 KO:K03168 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 ProtClustDB:PRK06599 OMA:RYTMASI
HSSP:P06612 RefSeq:NP_820975.1 ProteinModelPortal:Q83AA5
PRIDE:Q83AA5 GeneID:1209913 KEGG:cbu:CBU_2000 PATRIC:17932741
BioCyc:CBUR227377:GJ7S-1973-MONOMER Uniprot:Q83AA5
Length = 765
Score = 1253 (446.1 bits), Expect = 1.2e-134, Sum P(2) = 1.2e-134
Identities = 283/639 (44%), Positives = 393/639 (61%)
Query: 364 IQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAEN 423
I+ YLG ++V+ SYGHVRDL + G+V P+D F M ++ H+ +I AL N
Sbjct: 17 IEKYLGKDFKVMASYGHVRDLIPKEGAVDPEDHFKMHYQAIERNIRHMDAIAKALKPCHN 76
Query: 424 LILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDAN 483
L LA+DPDREGEAIAWH+ +ML+ ++ L + +RVVFH+IT+ +++ A++ R+I +
Sbjct: 77 LYLATDPDREGEAIAWHVKQMLESRNGLKDK-KFSRVVFHQITKKAVQHAIENPRDISMD 135
Query: 484 LVQAYLARRALDYLIGFNISPLLWRKL-PGCQSAGRVQSAALSLICDREMEIDEFKPQEY 542
LV A ARRALDYL+GFN+SPLLW+K+ PG SAGRVQS AL LI +RE+EI+ F+ QEY
Sbjct: 136 LVNAQQARRALDYLVGFNLSPLLWKKIRPGL-SAGRVQSPALRLIVEREIEIENFESQEY 194
Query: 543 WTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSA---NFQV 599
WT+ A + H+ F A L FQ ++L Q SI + +A + I A V
Sbjct: 195 WTIHA-----DCHAQQQ-PFDARLIEFQGEKLEQFSIVNEKQAHETRDAITQAANGKLTV 248
Query: 600 IKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITY 659
K KR R P+ITST+QQ+AA KL FSA+ TM++AQ+LYEGV L + A GLITY
Sbjct: 249 AKVVKRERKRNPAPPFITSTMQQEAARKLGFSASKTMQIAQQLYEGVNLGEEGAMGLITY 308
Query: 660 MRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLP 719
MRTD + ++ EA +EIR LI E+YG + PE+ R Y K KNAQEAHEAIRPT R P
Sbjct: 309 MRTDSVTLASEALQEIRQLIEEKYGQENVPEQ-TRIYKTKSKNAQEAHEAIRPTSAFRTP 367
Query: 720 AMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGF 779
L L+ D LKLY+LIW RT+ACQM AT+ + VD+ A +I FR++ S + GF
Sbjct: 368 ENLKKYLNSDQLKLYTLIWKRTIACQMIEATLHTVAVDL-KAPNAI-FRANGSTIVKPGF 425
Query: 780 QAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGS 839
+ Y++ K+ EE+D +L L+ G + + E++ +QH T+PP RY+E S
Sbjct: 426 ISVYQETFDDK---KKEEESDSK----MLPPLEEGQTVDVNEIKSEQHFTEPPPRYTEAS 478
Query: 840 LVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYS 899
LVK LEE IGRPSTYAS + L++R YV V ++ GR+V+ FL+HYF++ DY
Sbjct: 479 LVKALEEYDIGRPSTYASIIATLKNRKYVDVDNKRFIATDVGRIVNRFLTHYFTKYVDYG 538
Query: 900 FTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFAS 959
FTA +E ELD+++ G W +L +WS F + + EK ++++ D
Sbjct: 539 FTAKLEDELDDIARGEKTWIPVLETFWSPFKNL--------VDVTEKTVKRS--DVTQEK 588
Query: 960 LPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+ D CP C L ++ R G FIGC +P C+Y
Sbjct: 589 I---DEKCPKCS-AQLSIRLGR--RGRFIGCTAYPDCDY 621
Score = 87 (35.7 bits), Expect = 1.2e-134, Sum P(2) = 1.2e-134
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 965 RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYI 999
R CP C + LI K+ R+G FIGC+ +P C Y+
Sbjct: 639 RQCPEC-QSNLIIKMGRYGK--FIGCSGYPNCKYM 670
Score = 73 (30.8 bits), Expect = 3.7e-133, Sum P(2) = 3.7e-133
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 966 SCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+CP C +GT++ + SR G F C ++P C+Y
Sbjct: 682 TCPKCKKGTILQRKSRRGK-IFYSCARYPDCDY 713
Score = 66 (28.3 bits), Expect = 2.0e-132, Sum P(2) = 2.0e-132
Identities = 21/83 (25%), Positives = 33/83 (39%)
Query: 964 DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPK 1023
D CP C L ++ R G FIGC +P C+Y + L E +
Sbjct: 590 DEKCPKCS-AQLSIRLGR--RGRFIGCTAYPDCDY-TRNLTEIAAEAQAVLEGRQC---- 641
Query: 1024 LIGHHPASKEKVLLKSGPYGFYV 1046
P + +++K G YG ++
Sbjct: 642 -----PECQSNLIIKMGRYGKFI 659
Score = 43 (20.2 bits), Expect = 5.4e-130, Sum P(2) = 5.4e-130
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 966 SCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEED 1011
+CP CG L K ++ G C Q CN+I + GD D
Sbjct: 723 ACPKCGWPILSIKTTK-SRGTEKVCPQKS-CNFI-EAYDGDKPSLD 765
>TIGR_CMR|NSE_0594 [details] [associations]
symbol:NSE_0594 "DNA topoisomerase I" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0006268 "DNA
unwinding involved in replication" evidence=ISS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0006265 SMART:SM00493
GO:GO:0003917 KO:K03168 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
TIGRFAMs:TIGR01051 eggNOG:COG1754 HOGENOM:HOG000004020
RefSeq:YP_506474.1 ProteinModelPortal:Q2GDH2 STRING:Q2GDH2
GeneID:3931799 KEGG:nse:NSE_0594 PATRIC:22681227 OMA:SQFARRI
ProtClustDB:PRK06599 BioCyc:NSEN222891:GHFU-610-MONOMER
Uniprot:Q2GDH2
Length = 827
Score = 1096 (390.9 bits), Expect = 2.8e-120, Sum P(2) = 2.8e-120
Identities = 237/555 (42%), Positives = 328/555 (59%)
Query: 457 VARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSA 516
V RVVFHEIT+ +++ A+ + R+ID NLV+A R+ALDYL+GF+ISP+LW+KLPG +SA
Sbjct: 106 VHRVVFHEITKTAVQNAIASPRKIDENLVRAQRLRQALDYLVGFSISPVLWKKLPGSKSA 165
Query: 517 GRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQ 576
GRVQS AL ++CDRE EI F P+EYWTV + E+ L P L+H ++L +
Sbjct: 166 GRVQSVALRILCDRENEIGLFTPEEYWTVTVNMTDGEALVL-----PTQLSHMNGEKLER 220
Query: 577 LSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTM 636
+SI EA+ I ++I+ F V + K+ + +K P+ITST+QQ A+ L FS TM
Sbjct: 221 MSIRRAEEAEKIVEEISGLPFLVEEIKKKELKQKPSPPFITSTMQQTASTILGFSVKKTM 280
Query: 637 KLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKY 696
LAQKLYEG+++ G GLITYMRTD H+S E+ IR I E++G + P P +
Sbjct: 281 SLAQKLYEGIEI-GGVIEGLITYMRTDATHLSVESVDAIREFIQEKFGQEYLPAS-PVLF 338
Query: 697 FKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQV 756
KKVKNAQEAHEAIRPT I R P + L D KLY LIW R +ACQM A +
Sbjct: 339 KKKVKNAQEAHEAIRPTSIFRTPEEIESYLTPDQYKLYRLIWERALACQMSDAITSSQNI 398
Query: 757 DIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDP 816
+ D+ +S S + F GF AA+ + +N+ N + + K G
Sbjct: 399 VFVSQDKKFKTSASASLLIFDGFNAAFS--------HGKNK-NKNQDVIDFIKKHKEGAQ 449
Query: 817 LYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILY 876
+ +G+V L Q+ T+PP RYSE LVK LEELGIGRPSTYA+ + VLQ+R Y ++ ++
Sbjct: 450 VKVGDVLLTQNFTEPPHRYSEAGLVKHLEELGIGRPSTYATVVSVLQERGYASIVNKSFI 509
Query: 877 PEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCA 936
PE RGR+VS FL H+FS+ +Y FTA++E LD V+ G W ++ D+W F S
Sbjct: 510 PESRGRLVSEFLVHFFSKYVEYHFTAELEDRLDKVADGTIFWLDVIQDFWDSFHSNVEEV 569
Query: 937 QSLHIHQVEKMLEKTFGDSLFASLPNK-DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPR 995
+ + I +V + S K CP C +G + VSR+G F+GC +P
Sbjct: 570 EKVPITEVLAFVNGALARQKLVSAEVKVGDKCPKCEKGYMHLNVSRYGV--FLGCTDYPV 627
Query: 996 CNYIAKTLYGDDDEE 1010
C +I + D+D E
Sbjct: 628 CRFIVNSYSTDNDTE 642
Score = 895 (320.1 bits), Expect = 4.7e-99, Sum P(2) = 4.7e-99
Identities = 215/546 (39%), Positives = 318/546 (58%)
Query: 364 IQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAEN 423
I YLG + VL S+GHVR L + GSV + F M++++ T + + + A
Sbjct: 15 IAQYLGKDFRVLSSFGHVRALPNKKGSVDVTESFEMLYKLTDTGETVVPQLIKDVKKATA 74
Query: 424 LILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDAN 483
L LA+DPDREGEAI+WH+VE+ ++ D L ++ V RVVFHEIT+ +++ A+ + R+ID N
Sbjct: 75 LYLATDPDREGEAISWHLVEVFKENDVLPKD--VHRVVFHEITKTAVQNAIASPRKIDEN 132
Query: 484 LVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYW 543
LV+A R+ALDYL+GF+ISP+LW+KLPG +SAGRVQS AL ++CDRE EI F P+EYW
Sbjct: 133 LVRAQRLRQALDYLVGFSISPVLWKKLPGSKSAGRVQSVALRILCDRENEIGLFTPEEYW 192
Query: 544 TVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNS 603
TV + E+ L P L+H ++L ++SI EA+ I ++I+ F V +
Sbjct: 193 TVTVNMTDGEALVL-----PTQLSHMNGEKLERMSIRRAEEAEKIVEEISGLPFLVEEIK 247
Query: 604 KRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTD 663
K+ + +K P+ITST+QQ A+ L FS TM LAQKLYEG+++ G GLITYMRTD
Sbjct: 248 KKELKQKPSPPFITSTMQQTASTILGFSVKKTMSLAQKLYEGIEI-GGVIEGLITYMRTD 306
Query: 664 GLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLS 723
H+S E+ IR I E++G + P P + KKVKNAQEAHEAIRPT I R P +
Sbjct: 307 ATHLSVESVDAIREFIQEKFGQEYLPAS-PVLFKKKVKNAQEAHEAIRPTSIFRTPEEIE 365
Query: 724 GLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAY 783
L D KLY LIW R +ACQM A + + D+ +S S + F GF AA+
Sbjct: 366 SYLTPDQYKLYRLIWERALACQMSDAITSSQNIVFVSQDKKFKTSASASLLIFDGFNAAF 425
Query: 784 -----EDVDAGAIRY-KENEENDRHEAFAILNSLKTGDPLY-LGEVELKQHHTQ----PP 832
++ + I + K+++E + + +L + +P + E L +H + P
Sbjct: 426 SHGKNKNKNQDVIDFIKKHKEGAQVKVGDVLLTQNFTEPPHRYSEAGLVKHLEELGIGRP 485
Query: 833 ARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYF 892
+ Y+ ++V L+E G YAS + +++++ L EF S ++ ++F
Sbjct: 486 STYA--TVVSVLQERG------YASIV----NKSFIPESRGRLVSEFLVHFFSKYVEYHF 533
Query: 893 S-EVTD 897
+ E+ D
Sbjct: 534 TAELED 539
Score = 108 (43.1 bits), Expect = 2.8e-120, Sum P(2) = 2.8e-120
Identities = 32/124 (25%), Positives = 60/124 (48%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
PK++G HP +++ + GPYG Y+ Y + S +D +TL+ A++ +
Sbjct: 692 PKILGKHPIDGKEIKMGLGPYGLYLFWNAK---YYNLQFS-----QMDEMTLDQAVQFME 743
Query: 1082 YPVN--------LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEF 1133
V+ LG+H +G+ I +R R G +++ + +PK P ++LE A+
Sbjct: 744 DYVSHDKSLLRVLGSH--EGEEIQIRDGRYGPYIKYSKMNVPIPKGESPESLSLETAILL 801
Query: 1134 LSGK 1137
+ K
Sbjct: 802 IEKK 805
Score = 91 (37.1 bits), Expect = 1.8e-118, Sum P(2) = 1.8e-118
Identities = 28/104 (26%), Positives = 55/104 (52%)
Query: 1033 EKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLED--ALELLRYPVNLGNHP 1090
+ + L GPYG Y++ G K +S+ KDVD +++++ A ++ P LG HP
Sbjct: 649 QDISLHKGPYGIYLKC----KG---KNSSIP--KDVDPVSIDEEFAHKIASLPKILGKHP 699
Query: 1091 KDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFL 1134
DG+ I + L G + ++ + +++TL++A++F+
Sbjct: 700 IDGKEIKMGLGPYGLYLFWNAKYYNLQFSQM-DEMTLDQAVQFM 742
Score = 41 (19.5 bits), Expect = 3.4e-113, Sum P(2) = 3.4e-113
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 1089 HPKD-GQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLS 1135
+PK Q I L G ++ + +S+PK++ P + E A + S
Sbjct: 643 YPKQIAQDISLHKGPYGIYLKCKGKNSSIPKDVDPVSIDEEFAHKIAS 690
>TIGR_CMR|ECH_0750 [details] [associations]
symbol:ECH_0750 "DNA topoisomerase I" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0006268 "DNA
unwinding involved in replication" evidence=ISS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006265 SMART:SM00493
GO:GO:0003917 KO:K03168 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
TIGRFAMs:TIGR01051 eggNOG:COG1754 HOGENOM:HOG000004020
ProtClustDB:PRK06599 RefSeq:YP_507548.1 ProteinModelPortal:Q2GG85
STRING:Q2GG85 GeneID:3927721 KEGG:ech:ECH_0750 PATRIC:20576936
OMA:KLTHVND BioCyc:ECHA205920:GJNR-753-MONOMER Uniprot:Q2GG85
Length = 820
Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
Identities = 231/576 (40%), Positives = 345/576 (59%)
Query: 562 FPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNP-TPYITSTL 620
F A L+ + K+L + I + +A+ + +++ S ++ VI N ++ ++NP P+ITS+L
Sbjct: 209 FSAFLSCYAGKKLEKFDIKNEEDAQKLSEEVRSRSYSVI-NVEKKHTKRNPYPPFITSSL 267
Query: 621 QQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIF 680
QQ+A+ KL F+A TM +AQKLYEG+ + G GLITYMRTDG +I+DEA + IRS+I
Sbjct: 268 QQEASTKLGFTAKNTMLIAQKLYEGIDV-GGEIVGLITYMRTDGFYIADEALEHIRSIIV 326
Query: 681 ERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSR 740
+G + PE RKY KKVKNAQEAHEAIRPT+I P LS L + LKLY LIW R
Sbjct: 327 SMFGKEYLPESA-RKYVKKVKNAQEAHEAIRPTNITITPGSLSNYLTPEQLKLYDLIWKR 385
Query: 741 TMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEEND 800
T+A QM A + Q+ V++G+ D+ + R++ S + F GF Y G + E++++
Sbjct: 386 TVASQMNSAVIDQVIVELGSLDKVVTLRATGSSLFFDGFYKVY-----G---HGEDDDSK 437
Query: 801 RHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLK 860
+ +L L+ D L EV QH T PPARY+E SLVKK+EE+GIGRPSTYAS +
Sbjct: 438 NN----MLPLLQKNDKCPLDEVVPHQHFTNPPARYNEASLVKKMEEIGIGRPSTYASIIS 493
Query: 861 VLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKG 920
VLQDR YV + + +P RGR+V+ FL ++FS +Y FTAD+E +LD +S G WK
Sbjct: 494 VLQDRQYVILNQKRFFPTERGRIVNVFLVNFFSRYVEYDFTADLEEKLDLISNGKINWKE 553
Query: 921 LLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKD-RSCPVCGEGTLIFKV 979
+L +W F + L +V K++ + +F+S ++ R CPVC +GTL +
Sbjct: 554 VLHQFWFLFIDNVNSVKKLEFTEVLKVISCEMENYIFSSDKSESSRVCPVCNDGTLELNI 613
Query: 980 SRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKS 1039
S+ G F+GC+++P C Y G D+ D N PK++G A+ +++ LK
Sbjct: 614 SK--NGIFLGCSKYPECKYTKNVGSGIVDDTD------NTQYPKILGIDAATGQEIYLKK 665
Query: 1040 GPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLR 1099
GPYG Y+Q+G D++G KRA++ D + + L+ A ++L P++LG HP GQ I L
Sbjct: 666 GPYGLYLQIGNDKSG---KRAAIPKNIDANLLDLQMAEKILSLPISLGTHPDTGQEIKLG 722
Query: 1100 LARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLS 1135
L + G + + SV D+++E A+ ++
Sbjct: 723 LGKFGAYILYGGKYFSVKNEHNFLDISIENAINIIA 758
Score = 1018 (363.4 bits), Expect = 5.0e-108, Sum P(2) = 5.0e-108
Identities = 209/443 (47%), Positives = 299/443 (67%)
Query: 364 IQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL-KSIKVALSGAE 422
I YLG Y+V+ S+GH+RD A+SGSV PD DF+M +E+ S + ++ K I+VA +
Sbjct: 15 ISKYLGSKYKVVASFGHIRDFPAKSGSVDPDKDFAMTYEIISKSEKYVNKLIQVANKETQ 74
Query: 423 NLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDA 482
+ LA+DPDREGEAIAWHI+E+L++ +A+ +N+ + R+VF+E+T+++I +++ R I+
Sbjct: 75 GIYLATDPDREGEAIAWHIIEVLKENNAIDDNVVINRMVFNEVTKSAILESIKRPRSINM 134
Query: 483 NLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEY 542
+LV A ARRALDYL+GF +SPLLWRKLPG +SAGRVQS AL LICDRE +I++F QEY
Sbjct: 135 DLVYAQQARRALDYLVGFTLSPLLWRKLPGSKSAGRVQSVALRLICDRESDIEKFITQEY 194
Query: 543 WTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKN 602
W +EA E F A L+ + K+L + I + +A+ + +++ S ++ VI N
Sbjct: 195 WDIEAKCCNTEGKQ-----FSAFLSCYAGKKLEKFDIKNEEDAQKLSEEVRSRSYSVI-N 248
Query: 603 SKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMR 661
++ ++NP P+ITS+LQQ+A+ KL F+A TM +AQKLYEG+ + G GLITYMR
Sbjct: 249 VEKKHTKRNPYPPFITSSLQQEASTKLGFTAKNTMLIAQKLYEGIDV-GGEIVGLITYMR 307
Query: 662 TDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAM 721
TDG +I+DEA + IRS+I +G + PE RKY KKVKNAQEAHEAIRPT+I P
Sbjct: 308 TDGFYIADEALEHIRSIIVSMFGKEYLPESA-RKYVKKVKNAQEAHEAIRPTNITITPGS 366
Query: 722 LSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQA 781
LS L + LKLY LIW RT+A QM A + Q+ V++G+ D+ + R++ S + F GF
Sbjct: 367 LSNYLTPEQLKLYDLIWKRTVASQMNSAVIDQVIVELGSLDKVVTLRATGSSLFFDGFYK 426
Query: 782 AY---EDVDAGAIRYKENEENDR 801
Y ED D+ ++ND+
Sbjct: 427 VYGHGEDDDSKNNMLPLLQKNDK 449
Score = 70 (29.7 bits), Expect = 5.0e-108, Sum P(2) = 5.0e-108
Identities = 26/99 (26%), Positives = 50/99 (50%)
Query: 982 FGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGP 1041
+G YF N+H N++ ++ ++ + + N+ K +G +KE L K G
Sbjct: 732 YGGKYFSVKNEH---NFLDISI---ENAINIIANNSTSGVIKSLGITEDNKEVFLCK-GR 784
Query: 1042 YGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL 1080
YGFY++ D+ K+ + D++ I+L DA++L+
Sbjct: 785 YGFYLKY--DKLNVALKKDT-----DIEQISLSDAIKLI 816
>TIGR_CMR|CJE_1854 [details] [associations]
symbol:CJE_1854 "DNA topoisomerase I" species:195099
"Campylobacter jejuni RM1221" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
HOGENOM:HOG000004018 KO:K03168 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
TIGRFAMs:TIGR01051 ProtClustDB:PRK05582 RefSeq:YP_179824.1
ProteinModelPortal:Q5HSB1 STRING:Q5HSB1 GeneID:3232481
KEGG:cjr:CJE1854 PATRIC:20045540 OMA:RYTMASI
BioCyc:CJEJ195099:GJC0-1893-MONOMER Uniprot:Q5HSB1
Length = 700
Score = 729 (261.7 bits), Expect = 4.6e-106, Sum P(3) = 4.6e-106
Identities = 172/431 (39%), Positives = 259/431 (60%)
Query: 364 IQGYLGDMYEVLPSYGHVRDLAARSGSVR-PDDDFSMVWEVPSAAWTHLKSIKVALSGAE 422
I +LG YEV+ S GH+RDL S ++ DD+F + + S +K +K A+
Sbjct: 17 IGNFLGKDYEVIASKGHIRDLPKSSFGIKIEDDEFIPEYRITSDHSALVKELKSKAKDAK 76
Query: 423 NLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDA 482
+ LA+D DREGEAIA+HI + + + EN T+ R+VFHEIT+++I+ AL+ R+++
Sbjct: 77 EVYLATDEDREGEAIAYHIAKAIGKD----EN-TLPRIVFHEITKSAIENALKNPRKLNM 131
Query: 483 NLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEY 542
+ V A RR LD ++G+ +SPLL +K+ SAGRVQSAAL +I DRE EI F P EY
Sbjct: 132 HSVNAQQTRRLLDRIVGYKLSPLLGQKIQRGLSAGRVQSAALKIIVDREKEIRAFVPLEY 191
Query: 543 WTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQV--I 600
++++ + K LD A L F ++ +L+I + AK I + + + + I
Sbjct: 192 FSIDMIFQK----DLD-----AELVEFDKAKIEKLTITNKDRAKLILEACKNEVYSISDI 242
Query: 601 KNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYM 660
++ +R + P P++TSTLQQ A+N+L F+ TM +AQKLYEGV +G G+ITYM
Sbjct: 243 ESKERKIAP--PPPFMTSTLQQSASNRLGFNPKKTMMIAQKLYEGVNTHEGVM-GVITYM 299
Query: 661 RTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPA 720
RTD L+++ EA + R I +G + P + Y K K AQEAHEAIRPT++ P
Sbjct: 300 RTDSLNLAKEAVENARKFIQANFGKDYLPSKA-NVYTTKTKGAQEAHEAIRPTNLSFTPE 358
Query: 721 MLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQ 780
+ + LD+D LKLY+LI++R +ACQM PA + Q Q ++ ++ VF+ S ++ F G+
Sbjct: 359 IAAKFLDKDELKLYTLIYNRFLACQMSPA-ISQTQ-NVFVKNDRAVFKISGRKILFDGYY 416
Query: 781 AAYEDVDAGAI 791
Y D+D I
Sbjct: 417 KVYGDMDKDKI 427
Score = 277 (102.6 bits), Expect = 4.6e-106, Sum P(3) = 4.6e-106
Identities = 73/222 (32%), Positives = 110/222 (49%)
Query: 762 DESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGE 821
++ VF+ S ++ F G+ Y D+D D+ IL + K G L +
Sbjct: 398 NDRAVFKISGRKILFDGYYKVYGDMD-----------KDK-----ILPNFKIGQNLKVQN 441
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRG 881
+E+ H T+PP+RYSE LVKKLE LGIGRPSTYA T+ +L R+YVT+ + L P
Sbjct: 442 LEMNSHFTEPPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVTIDKKQLIPSDVA 501
Query: 882 RMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI 941
V+ L FS++ D FT+++E LD ++ +W+ L +++ F +
Sbjct: 502 FNVTEVLEKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPF-----------M 550
Query: 942 HQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFG 983
++E+ K L SCP CG G L + RFG
Sbjct: 551 RKIEEGKTKIASQKTVTKL---GESCPDCG-GELAIRKGRFG 588
Score = 89 (36.4 bits), Expect = 4.6e-106, Sum P(3) = 4.6e-106
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 966 SCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
+CP C +G ++ + S+ G F GC+ +P+CN+I+K Y +E+
Sbjct: 628 TCPSCQKGEIVERFSK--RGKFYGCSAYPKCNFISK--YKPSEEK 668
Score = 77 (32.2 bits), Expect = 8.4e-105, Sum P(3) = 8.4e-105
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 966 SCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
SCP CG G L + RFG F+ C P+C Y ++ L + E
Sbjct: 572 SCPDCG-GELAIRKGRFGE--FVACLNFPKCKY-SRNLKSESKNE 612
>TIGR_CMR|APH_0597 [details] [associations]
symbol:APH_0597 "DNA topoisomerase I" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006265 "DNA topological
change" evidence=ISS] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR005733 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0006265 SMART:SM00493 GO:GO:0003917
KO:K03168 Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 TIGRFAMs:TIGR01051 eggNOG:COG1754
HOGENOM:HOG000004020 ProtClustDB:PRK06599 OMA:KLTHVND
RefSeq:YP_505187.1 ProteinModelPortal:Q2GKB4 STRING:Q2GKB4
GeneID:3930246 KEGG:aph:APH_0597 PATRIC:20949858
BioCyc:APHA212042:GHPM-621-MONOMER Uniprot:Q2GKB4
Length = 811
Score = 967 (345.5 bits), Expect = 1.2e-104, Sum P(2) = 1.2e-104
Identities = 210/493 (42%), Positives = 307/493 (62%)
Query: 364 IQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL-KSIKVALSGAE 422
I YLG + V+ S+GH+RD A+SGSV P +DF M++E+ + HL K +K + E
Sbjct: 15 ISKYLGKKFNVIASFGHIRDFPAKSGSVDPSNDFKMIYEIIPKSEKHLDKIVKTVSAEKE 74
Query: 423 NLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDA 482
+ LA+DPDREGEAIAWHIVE+L+++ A+ +++TV R+VF+E+T+ ++ A+ R I+
Sbjct: 75 AIYLATDPDREGEAIAWHIVEVLKEKCAIAKDVTVNRMVFNEVTKRAVTAAVDNCRPINM 134
Query: 483 NLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEY 542
+LV+A RR LDYL+GF +SPLLWRKLPG +SAGRVQS AL L+C+RE E+++FK QEY
Sbjct: 135 DLVRAQQTRRVLDYLVGFTLSPLLWRKLPGSRSAGRVQSVALRLLCEREYEVEQFKTQEY 194
Query: 543 WTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKN 602
W V L + F A L + ++L + SIG+ +AK+ + + + ++ V ++
Sbjct: 195 WDVGVDLQNQGGEK-----FEAVLKCYAGEKLEKFSIGTEEQAKEYAETVKNQSYTV-ES 248
Query: 603 SKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMR 661
+ ++NP P+ITS+LQQ+A+ KL FSA TM +AQKLYEG+ + G GLITYMR
Sbjct: 249 VESKKTKRNPYPPFITSSLQQEASTKLGFSAKNTMMIAQKLYEGIDI-GGEIVGLITYMR 307
Query: 662 TDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAM 721
TDG +IS++A IR I ++G + + R Y KKVKNAQEAHEAIRPTDI LP
Sbjct: 308 TDGFYISEDAVNYIRDTIKMQFGEKYL-SKSVRNYTKKVKNAQEAHEAIRPTDITMLPEQ 366
Query: 722 LSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQA 781
LS L ++ LKLY+LIW RT+A QM+ A + Q+ VDI ++ I ++ S + F G+
Sbjct: 367 LSKYLTDEQLKLYTLIWKRTLATQMESAVIDQVAVDIKSSCGKISLHATGSTLSFDGYYR 426
Query: 782 AYEDVDAGAIRY-KENEENDRHEAFAIL-NSLKTGDPLYLGEVELKQHHTQ----PPARY 835
Y D+ R + E + E + N T P E L + + P+ Y
Sbjct: 427 VYGSEDSDKRRMLPQLREGESCELLEVHPNQHFTQPPARYSEASLVKKMEEIGIGRPSTY 486
Query: 836 SEGSLVKKLEELG 848
+ +++ L+E G
Sbjct: 487 A--TIISVLQERG 497
Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
Identities = 217/576 (37%), Positives = 337/576 (58%)
Query: 562 FPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNP-TPYITSTL 620
F A L + ++L + SIG+ +AK+ + + + ++ V ++ + ++NP P+ITS+L
Sbjct: 209 FEAVLKCYAGEKLEKFSIGTEEQAKEYAETVKNQSYTV-ESVESKKTKRNPYPPFITSSL 267
Query: 621 QQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIF 680
QQ+A+ KL FSA TM +AQKLYEG+ + G GLITYMRTDG +IS++A IR I
Sbjct: 268 QQEASTKLGFSAKNTMMIAQKLYEGIDI-GGEIVGLITYMRTDGFYISEDAVNYIRDTIK 326
Query: 681 ERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSR 740
++G + + R Y KKVKNAQEAHEAIRPTDI LP LS L ++ LKLY+LIW R
Sbjct: 327 MQFGEKYL-SKSVRNYTKKVKNAQEAHEAIRPTDITMLPEQLSKYLTDEQLKLYTLIWKR 385
Query: 741 TMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEEND 800
T+A QM+ A + Q+ VDI ++ I ++ S + F G+ Y G+ E++D
Sbjct: 386 TLATQMESAVIDQVAVDIKSSCGKISLHATGSTLSFDGYYRVY-----GS------EDSD 434
Query: 801 RHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLK 860
+ +L L+ G+ L EV QH TQPPARYSE SLVKK+EE+GIGRPSTYA+ +
Sbjct: 435 KRR---MLPQLREGESCELLEVHPNQHFTQPPARYSEASLVKKMEEIGIGRPSTYATIIS 491
Query: 861 VLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKG 920
VLQ+R Y ++ + P RGR+V+AFL+++F + +Y FTA++E ELD +S G WK
Sbjct: 492 VLQERGYTQLEQKRFIPSERGRIVNAFLTNFFRKYVEYDFTANLEEELDLISNGKMVWKE 551
Query: 921 LLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKD--RSCPVCGEGTLIFK 978
+L +W +F S + +++ ++ K + + + F+S+ + R CP CG G L+
Sbjct: 552 VLSQFWDKFISDVSSVKTIEASEILKAITRDLENYAFSSVDGESISRVCPQCGSGELMLN 611
Query: 979 VSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLK 1038
+ + A F+GCN++P C Y + + GD D +++G ++E++ LK
Sbjct: 612 IGKTSA--FLGCNRYPECRY-TRGIGGDGSASPA------DDASRILGIDEETQEEIFLK 662
Query: 1039 SGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIML 1098
GPYG Y+QLG KR S++ K IT++ A ++L P+ LG +P + I L
Sbjct: 663 RGPYGEYLQLGNST-----KRVSLT--KSAGEITVDLAKKMLSLPLVLGCYPDTDKEIKL 715
Query: 1099 RLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFL 1134
+ R G + + S+ +++ ++A+E +
Sbjct: 716 GIGRFGPYLFYNGVYFSIKDREDYINISHQEAVEII 751
Score = 89 (36.4 bits), Expect = 1.2e-104, Sum P(2) = 1.2e-104
Identities = 39/123 (31%), Positives = 63/123 (51%)
Query: 1022 PKLIGHHPASKEKVLL---KSGPYGFY--VQLG-EDRTGYLPKRASVSHIKDVDSITLE- 1074
P ++G +P + +++ L + GPY FY V +DR Y+ ++SH + V+ I +
Sbjct: 700 PLVLGCYPDTDKEIKLGIGRFGPYLFYNGVYFSIKDREDYI----NISHQEAVEIIDKQS 755
Query: 1075 DALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFL 1134
D L LG + KDG+ I + R GF ++ +T SV + D+TLE A+ L
Sbjct: 756 DKKAKL-----LGQN-KDGKDIYVCKGRYGFYLKCDKT--SVALKGRSEDITLEDAILLL 807
Query: 1135 SGK 1137
S K
Sbjct: 808 SQK 810
>TIGR_CMR|DET_0717 [details] [associations]
symbol:DET_0717 "DNA topoisomerase I" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
HOGENOM:HOG000004018 KO:K03168 OMA:EFWDIHA Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 RefSeq:YP_181458.1
ProteinModelPortal:Q3Z8J1 STRING:Q3Z8J1 GeneID:3229934
KEGG:det:DET0717 PATRIC:21608497 ProtClustDB:PRK05582
BioCyc:DETH243164:GJNF-718-MONOMER Uniprot:Q3Z8J1
Length = 703
Score = 947 (338.4 bits), Expect = 2.9e-99, Sum P(2) = 2.9e-99
Identities = 219/545 (40%), Positives = 316/545 (57%)
Query: 459 RVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGR 518
RVVFHEIT+ +I A + RE+D +LV A ARR LD L+G+ +SPLLWRK+ SAGR
Sbjct: 107 RVVFHEITKEAIDKAFKNTRELDMDLVNAQQARRVLDRLVGYKLSPLLWRKVQRGLSAGR 166
Query: 519 VQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLS 578
VQS +L +I DRE EI++F EYW +EA+L+KK + + +F A L + +K +L
Sbjct: 167 VQSVSLKIIVDREREIEKFVSAEYWNIEALLNKK----VKSAAFKASLAGYVTK--GKLE 220
Query: 579 IGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKL 638
I + +EA+ I++++ +++QV+K K+S +R++P P+ITSTLQQ+A KL+FSA TM +
Sbjct: 221 IHNESEAEQIKKELEVSDYQVLKIKKKSNLRQSPAPFITSTLQQEAWRKLHFSAKQTMVI 280
Query: 639 AQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFK 698
AQ+LYEG+ + GLITYMRTD +++ A E R I E+YG + P++ R +
Sbjct: 281 AQQLYEGLNIEGEGEVGLITYMRTDSTNVARTAVAETRDYISEKYGPAYLPKQA-RVFSS 339
Query: 699 KVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI 758
KVK AQEAHEAIRPT I R P ++ L + KLY LIW R MA QM PA +DI
Sbjct: 340 KVKGAQEAHEAIRPTRIIRTPDLIKKSLSTEQFKLYQLIWQRMMASQMSPAVFDNTTIDI 399
Query: 759 GNADESIVFRSSCSRVEFLGFQAAYEDVDAG-AIRYKENEENDRHEAFAILNSLKTGDPL 817
E+ + S+ +L + + G I Y E ++ D A + L ++ G+ L
Sbjct: 400 ----EA---KHQPSKTRYLLRTTSSVNTFPGFTIVYIEGKDEDEEAAQSSLPPMEEGEEL 452
Query: 818 YLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYP 877
L +E QH TQPP RY+E +L+K LE+ GIGRPSTYA T+ +Q+R Y+T L P
Sbjct: 453 KLKSLEASQHFTQPPPRYTEATLIKALEQYGIGRPSTYAPTISTIQEREYITKLKGSLKP 512
Query: 878 EFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQ 937
G +V+ L YF ++ FTA METELD ++ +W ++ ++ F
Sbjct: 513 SELGMLVNDLLVEYFPDIIGIDFTAAMETELDKIATEKLDWVPIIRRFYEPF-------- 564
Query: 938 SLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPR-- 995
I ++E EK + + D CP C L+ K RFG FI C+++ +
Sbjct: 565 ---IKEIEAASEKI--EKIKPPEEELDELCPECN-AKLVVKRGRFGK--FIACSRYTKEE 616
Query: 996 --CNY 998
C Y
Sbjct: 617 GGCRY 621
Score = 798 (286.0 bits), Expect = 1.5e-83, Sum P(2) = 1.5e-83
Identities = 184/446 (41%), Positives = 266/446 (59%)
Query: 364 IQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAEN 423
I LG + ++ + GH+RDL + V ++ F+ + A +K +K A+ ++
Sbjct: 17 ISKMLGKDFNIMATMGHIRDLPKSTLGVDVENSFTPKYVSLKAKAKVIKELKDAVKNSKA 76
Query: 424 LILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDAN 483
+ LA+DPDREGEAIAWHI E+ + A + RVVFHEIT+ +I A + RE+D +
Sbjct: 77 IYLATDPDREGEAIAWHISEVTKANLAKPK-----RVVFHEITKEAIDKAFKNTRELDMD 131
Query: 484 LVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYW 543
LV A ARR LD L+G+ +SPLLWRK+ SAGRVQS +L +I DRE EI++F EYW
Sbjct: 132 LVNAQQARRVLDRLVGYKLSPLLWRKVQRGLSAGRVQSVSLKIIVDREREIEKFVSAEYW 191
Query: 544 TVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNS 603
+EA+L+KK + + +F A L + +K +L I + +EA+ I++++ +++QV+K
Sbjct: 192 NIEALLNKK----VKSAAFKASLAGYVTK--GKLEIHNESEAEQIKKELEVSDYQVLKIK 245
Query: 604 KRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTD 663
K+S +R++P P+ITSTLQQ+A KL+FSA TM +AQ+LYEG+ + GLITYMRTD
Sbjct: 246 KKSNLRQSPAPFITSTLQQEAWRKLHFSAKQTMVIAQQLYEGLNIEGEGEVGLITYMRTD 305
Query: 664 GLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLS 723
+++ A E R I E+YG + P++ R + KVK AQEAHEAIRPT I R P ++
Sbjct: 306 STNVARTAVAETRDYISEKYGPAYLPKQA-RVFSSKVKGAQEAHEAIRPTRIIRTPDLIK 364
Query: 724 GLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES----IVFRSSCSRVEFLGF 779
L + KLY LIW R MA QM PA +DI + + R++ S F GF
Sbjct: 365 KSLSTEQFKLYQLIWQRMMASQMSPAVFDNTTIDIEAKHQPSKTRYLLRTTSSVNTFPGF 424
Query: 780 QAAY-----EDVDAGAIRYKENEEND 800
Y ED +A EE +
Sbjct: 425 TIVYIEGKDEDEEAAQSSLPPMEEGE 450
Score = 58 (25.5 bits), Expect = 2.9e-99, Sum P(2) = 2.9e-99
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 967 CPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
CP C ++ K S+ G F GC +P C +++
Sbjct: 633 CPECNSD-IVEKYSKKGK-IFYGCAGYPNCKFVS 664
>TIGR_CMR|GSU_2549 [details] [associations]
symbol:GSU_2549 "DNA topoisomerase I" species:243231
"Geobacter sulfurreducens PCA" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 HOGENOM:HOG000004018
KO:K03168 Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 TIGRFAMs:TIGR01051
ProtClustDB:PRK06599 RefSeq:NP_953595.1 ProteinModelPortal:Q74A42
GeneID:2687248 KEGG:gsu:GSU2549 PATRIC:22027949 OMA:KGKCIPT
BioCyc:GSUL243231:GH27-2526-MONOMER Uniprot:Q74A42
Length = 757
Score = 876 (313.4 bits), Expect = 1.3e-94, Sum P(2) = 1.3e-94
Identities = 197/425 (46%), Positives = 261/425 (61%)
Query: 364 IQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAEN 423
I+ +LG Y+VL SYGHVR L ++ GSV + DF + V + H+ +IK L +++
Sbjct: 17 IEKFLGPDYKVLASYGHVRALPSKQGSVDVEHDFEPRYAVLPESKRHIDAIKKELKASDS 76
Query: 424 LILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDAN 483
L+LA+DPDREGEAI+WH++ L + + V RVVFHEIT+ +I A++ R+I +
Sbjct: 77 LLLATDPDREGEAISWHLLAALGVKPE-KPPVPVRRVVFHEITKDAIVHAVENPRDISQD 135
Query: 484 LVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYW 543
LV A AR LDYL+GFN+SP LW+K+ SAGRVQS AL LIC+RE EI F+ QEYW
Sbjct: 136 LVDAQQARSILDYLVGFNLSPFLWKKIRYGLSAGRVQSVALRLICEREKEIQAFQSQEYW 195
Query: 544 TVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNS 603
T+ A L K+ A+L + K+L++ I A + + + +A F V K +
Sbjct: 196 TIGAELAKEGGQKCT-----ANLVEAEGKKLDKFDIPDQAAADRLVKALENATFTVDKVT 250
Query: 604 KRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTD 663
K R P+ TSTLQQ+AA KL FSA TM AQKLYEGV + +G GLITYMRTD
Sbjct: 251 KSERKRTPAPPFTTSTLQQEAARKLGFSAKKTMATAQKLYEGVAIDEGLV-GLITYMRTD 309
Query: 664 GLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLS 723
+ +S++A +E +I YG +A + PR Y K KNAQEAHEA+RPT I R PA L
Sbjct: 310 SVVLSNQALQEAHQVITSLYGPEYALAK-PRFYKNKAKNAQEAHEAVRPTSIARTPAELK 368
Query: 724 GLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAY 783
L D KLY LIW RT+ACQM A + Q VDIG A + FR++ + + F GF Y
Sbjct: 369 KYLSSDQFKLYDLIWKRTVACQMAEALLDQTSVDIG-AGKGYRFRAAGTVIRFPGFMKLY 427
Query: 784 -EDVD 787
E VD
Sbjct: 428 IEGVD 432
Score = 741 (265.9 bits), Expect = 9.6e-80, Sum P(2) = 9.6e-80
Identities = 187/449 (41%), Positives = 249/449 (55%)
Query: 564 AHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQD 623
A+L + K+L++ I A + + + +A F V K +K R P+ TSTLQQ+
Sbjct: 211 ANLVEAEGKKLDKFDIPDQAAADRLVKALENATFTVDKVTKSERKRTPAPPFTTSTLQQE 270
Query: 624 AANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERY 683
AA KL FSA TM AQKLYEGV + +G GLITYMRTD + +S++A +E +I Y
Sbjct: 271 AARKLGFSAKKTMATAQKLYEGVAIDEGLV-GLITYMRTDSVVLSNQALQEAHQVITSLY 329
Query: 684 GSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMA 743
G +A + PR Y K KNAQEAHEA+RPT I R PA L L D KLY LIW RT+A
Sbjct: 330 GPEYALAK-PRFYKNKAKNAQEAHEAVRPTSIARTPAELKKYLSSDQFKLYDLIWKRTVA 388
Query: 744 CQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRH 802
CQM A + Q VDIG A + FR++ + + F GF Y E VD A EE +
Sbjct: 389 CQMAEALLDQTSVDIG-AGKGYRFRAAGTVIRFPGFMKLYIEGVDDQA------EEKE-- 439
Query: 803 EAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVL 862
L L G+ L L ++ +QH TQPP RY+E SLVK LEE GIGRPSTYAS + L
Sbjct: 440 ---GTLPPLTEGELLKLLKLLPEQHFTQPPPRYTEASLVKTLEEYGIGRPSTYASIMNTL 496
Query: 863 QDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLL 922
+R Y + S+ PE G +V+ L+++F+ DY+FTA +E ELD VS G WK LL
Sbjct: 497 LERKYARLDSKRFIPEDVGMVVNDLLTNHFTTYVDYNFTATLEEELDQVSRGEKRWKPLL 556
Query: 923 VDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRF 982
++W F Q L + Q E + K D + D +CP CG+ L+ K+ +
Sbjct: 557 REFWEPF-------QGL-LKQKEGEVSKA--D---LTTEATDEACPECGK-PLVVKLGK- 601
Query: 983 GAGYFIGCNQHPR-CNYIAKTLYGDDDEE 1010
G FI C+ + C Y G+ E+
Sbjct: 602 -RGKFIACSGYKEGCTYTRNIDQGEGREQ 629
Score = 85 (35.0 bits), Expect = 1.3e-94, Sum P(2) = 1.3e-94
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 966 SCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+CP C EG L K SR+G F CN++P+C +
Sbjct: 680 TCPECKEGELTEKKSRYGK-MFYSCNRYPQCKF 711
Score = 59 (25.8 bits), Expect = 7.0e-92, Sum P(2) = 7.0e-92
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 964 DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYI 999
+ C CG LI K RFG ++ C+ +P C I
Sbjct: 636 EEKCDKCGSPMLI-KDGRFGK--YLACSAYPACKNI 668
Score = 50 (22.7 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 961 PNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
P + CP CG L+ KV + G F+ C + C+Y
Sbjct: 716 PPQPGPCPKCGFPLLVKKVYK-REGEFLKCPKEG-CDY 751
>UNIPROTKB|P0A620 [details] [associations]
symbol:topA "DNA topoisomerase 1" species:1773
"Mycobacterium tuberculosis" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] [GO:0060701 "negative regulation
of ribonuclease activity" evidence=IDA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005829 GO:GO:0005886 GO:GO:0005524 GO:GO:0040007
GO:GO:0005618 GO:GO:0005694 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0000287 EMBL:BX842583 GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 KO:K03168
ProtClustDB:PRK07561 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
TIGRFAMs:TIGR01051 EMBL:U40159 PIR:G70563 RefSeq:NP_218163.1
RefSeq:NP_338295.1 RefSeq:YP_006517133.1 ProteinModelPortal:P0A620
SMR:P0A620 PhosSite:P12071734 PRIDE:P0A620
EnsemblBacteria:EBMYCT00000003850 EnsemblBacteria:EBMYCT00000070990
GeneID:13317254 GeneID:885608 GeneID:922741 KEGG:mtc:MT3749
KEGG:mtu:Rv3646c KEGG:mtv:RVBD_3646c PATRIC:18130002
TubercuList:Rv3646c eggNOG:COG1754 HOGENOM:HOG000004020 OMA:GKYGPYL
GO:GO:0060701 Uniprot:P0A620
Length = 934
Score = 816 (292.3 bits), Expect = 4.9e-91, Sum P(2) = 4.9e-91
Identities = 228/597 (38%), Positives = 310/597 (51%)
Query: 364 IQGYLGDMYEVLPSYGHVRDLAARSGSV------RP--------DDDFSMVWEVPSAAWT 409
+ YLG Y V S GH+RDL + V +P D DF ++ + +
Sbjct: 32 LASYLGSGYIVESSRGHIRDLPRAASDVPAKYKSQPWARLGVNVDADFEPLYIISPEKRS 91
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ ++ L + L LA+D DREGEAIAWH++E L+ + I V R+VFHEITE +
Sbjct: 92 TVSELRGLLKDVDELYLATDGDREGEAIAWHLLETLKPR------IPVKRMVFHEITEPA 145
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A + R++D +LV A RR LD L G+ +SP+LW+K+ SAGRVQS A +I
Sbjct: 146 IRAAAEHPRDLDIDLVDAQETRRILDRLYGYEVSPVLWKKVAPKLSAGRVQSVATRIIVA 205
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTF--SFPAHLTHFQSKR---------LNQLS 578
RE + F+ YW + A LD S D +F A LT +R L L
Sbjct: 206 RERDRMAFRSAAYWDILAKLDASVSDP-DAAPPTFSARLTAVAGRRVATGRDFDSLGTLR 264
Query: 579 IGSHTEAKD------IEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSA 632
G D + ++ V ++ R+ P++TSTLQQ+A+ KL FSA
Sbjct: 265 KGDEVIVLDEGSATALAAGLDGTQLTVASAEEKPYARRPYPPFMTSTLQQEASRKLRFSA 324
Query: 633 TYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHH-APEE 691
TM +AQ+LYE G ITYMRTD +S+ A R+ + YG + AP
Sbjct: 325 ERTMSIAQRLYEN---------GYITYMRTDSTTLSESAINAARTQARQLYGDEYVAP-- 373
Query: 692 GPRKYFKKVKNAQEAHEAIRPT-DIRRLPAMLSGLLDE---DCLKLYSLIWSRTMACQMQ 747
PR+Y +KVKNAQEAHEAIRP + P + LD D +LY LIW RT+A QM
Sbjct: 374 APRQYTRKVKNAQEAHEAIRPAGETFATPDAVRRELDGPNIDDFRLYELIWQRTVASQMA 433
Query: 748 PATVGQIQVDI-G-NADESIVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEA 804
A + + I G + + +VF ++ + F GF AY E VD + E ++ +R
Sbjct: 434 DARGMTLSLRITGMSGHQEVVFSATGRTLTFPGFLKAYVETVDE--LVGGEADDAERR-- 489
Query: 805 FAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQD 864
L L G L + E+ H T PPARY+E SLVK LEELGIGRPSTY+S +K +QD
Sbjct: 490 ---LPHLTPGQRLDIVELTPDGHATNPPARYTEASLVKALEELGIGRPSTYSSIIKTIQD 546
Query: 865 RNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAG---LTEW 918
R YV K L P + V+ L +F + DY FTA ME ELD ++AG T W
Sbjct: 547 RGYVHKKGSALVPSWVAFAVTGLLEQHFGRLVDYDFTAAMEDELDEIAAGNERRTNW 603
Score = 111 (44.1 bits), Expect = 4.9e-91, Sum P(2) = 4.9e-91
Identities = 37/129 (28%), Positives = 64/129 (49%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+++G PAS E++ ++G YG Y++ G D R+ V+ + +ITL++AL++
Sbjct: 787 PRVVGVDPASGEEITAQNGRYGPYLKRGND------SRSLVTE-DQIFTITLDEALKIYA 839
Query: 1082 YPVN-------------LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
P LG P G+P++++ R G V T AS+ K +T E
Sbjct: 840 EPKRRGRQSASAPPLRELGTDPASGKPMVIKDGRFGPYVTDGETNASLRKGDDVASITDE 899
Query: 1129 KALEFLSGK 1137
+A E L+ +
Sbjct: 900 RAAELLADR 908
Score = 89 (36.4 bits), Expect = 1.0e-88, Sum P(2) = 1.0e-88
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 1046 VQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGF 1105
V+ + G P+ S+ D+ ++TLEDAL LL P +G P G+ I + R G
Sbjct: 750 VKKRQKAAGPKPRTGSLLRSMDLQTVTLEDALRLLSLPRVVGVDPASGEEITAQNGRYGP 809
Query: 1106 SVRHRRTIASVPKNMKPNDVTLEKALE 1132
++ S+ + +TL++AL+
Sbjct: 810 YLKRGNDSRSLVTEDQIFTITLDEALK 836
Score = 73 (30.8 bits), Expect = 9.8e-90, Sum P(3) = 9.8e-90
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 1038 KSGPYGFYVQLGEDRTGY-LPKRASVSHIKDVDSITLEDALELLRYPVN---LGNHPKDG 1093
K+GPY + G+ TG P+RA++S D +TL+ A EL P LG P+ G
Sbjct: 661 KNGPYLERLVAGD--TGEPTPQRANLSDSITPDELTLQVAEELFATPQQGRTLGLDPETG 718
Query: 1094 QPIMLRLARAG 1104
I+ R R G
Sbjct: 719 HEIVAREGRFG 729
Score = 39 (18.8 bits), Expect = 9.8e-90, Sum P(3) = 9.8e-90
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 1111 RTIASVPKNMKPNDVTLEKALEFLS 1135
RT S+ ++M VTLE AL LS
Sbjct: 762 RT-GSLLRSMDLQTVTLEDALRLLS 785
>TIGR_CMR|BA_3971 [details] [associations]
symbol:BA_3971 "DNA topoisomerase I" species:198094
"Bacillus anthracis str. Ames" [GO:0003917 "DNA topoisomerase type
I activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006265 SMART:SM00493 GO:GO:0003917
HOGENOM:HOG000004018 KO:K03168 OMA:EFWDIHA Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 ProtClustDB:PRK05582
RefSeq:NP_846214.1 RefSeq:YP_020610.1 RefSeq:YP_029935.1
HSSP:P06612 ProteinModelPortal:Q81WK2 IntAct:Q81WK2 DNASU:1086791
EnsemblBacteria:EBBACT00000009759 EnsemblBacteria:EBBACT00000014833
EnsemblBacteria:EBBACT00000023600 GeneID:1086791 GeneID:2818374
GeneID:2850818 KEGG:ban:BA_3971 KEGG:bar:GBAA_3971 KEGG:bat:BAS3684
BioCyc:BANT260799:GJAJ-3742-MONOMER
BioCyc:BANT261594:GJ7F-3859-MONOMER Uniprot:Q81WK2
Length = 692
Score = 747 (268.0 bits), Expect = 5.3e-79, Sum P(2) = 5.3e-79
Identities = 181/429 (42%), Positives = 247/429 (57%)
Query: 364 IQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAEN 423
I+ YLG Y+V+ S GHVRDL + ++F+ + LK +K A A+
Sbjct: 17 IEKYLGKKYKVVASMGHVRDLPKSQMGIEVKNNFTPKYITIRGKGPVLKDLKSAAKKAKK 76
Query: 424 LILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDAN 483
+ LA+DPDREGEAIAWH+ L D + RVVF+EIT+ +IK + + R I+ +
Sbjct: 77 VYLAADPDREGEAIAWHLANTLNV-DVESD----CRVVFNEITKDAIKESFKHPRAINMD 131
Query: 484 LVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYW 543
LV A ARR LD L+G+NISPLLW+K+ SAGRVQS A+ LI +RE EI F+P+E+W
Sbjct: 132 LVDAQQARRILDRLVGYNISPLLWKKVKKGLSAGRVQSVAVRLIIEREREIQSFEPEEFW 191
Query: 544 TVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNS 603
T++ K + DTF F ++ + + T+ +I +++ F V +N
Sbjct: 192 TIKTEFVKGK----DTFE-----ASFYGVDGEKVQLTNETQVNEIIEQLKDNAFSV-ENV 241
Query: 604 KRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRT 662
R ++NP P+ TS+LQQ+AA KLN A TM LAQ+LYEG+ L GLITYMRT
Sbjct: 242 TRKERKRNPALPFTTSSLQQEAARKLNMRAKKTMMLAQQLYEGIDLGKQGTVGLITYMRT 301
Query: 663 DGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAML 722
D IS+ A E R+ I E YG+ + E +K KK NAQ+AHEAIRPT + R P L
Sbjct: 302 DSTRISETAQTEARTYITEAYGTEYIGAE-KKKETKK-SNAQDAHEAIRPTSVMRKPEEL 359
Query: 723 SGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAA 782
L D L+LY LIW R +A QM A + + + N ++ FR+S S V+F GF
Sbjct: 360 KSFLSRDQLRLYKLIWERFVASQMASAIMDTVTARLIN--NNVQFRASGSVVKFPGFMKV 417
Query: 783 Y-EDVDAGA 790
Y E D GA
Sbjct: 418 YVESKDDGA 426
Score = 654 (235.3 bits), Expect = 3.0e-68, Sum P(2) = 3.0e-68
Identities = 160/423 (37%), Positives = 233/423 (55%)
Query: 576 QLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATY 634
++ + + T+ +I +++ F V +N R ++NP P+ TS+LQQ+AA KLN A
Sbjct: 215 KVQLTNETQVNEIIEQLKDNAFSV-ENVTRKERKRNPALPFTTSSLQQEAARKLNMRAKK 273
Query: 635 TMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPR 694
TM LAQ+LYEG+ L GLITYMRTD IS+ A E R+ I E YG+ + E +
Sbjct: 274 TMMLAQQLYEGIDLGKQGTVGLITYMRTDSTRISETAQTEARTYITEAYGTEYIGAE-KK 332
Query: 695 KYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQI 754
K KK NAQ+AHEAIRPT + R P L L D L+LY LIW R +A QM A + +
Sbjct: 333 KETKK-SNAQDAHEAIRPTSVMRKPEELKSFLSRDQLRLYKLIWERFVASQMASAIMDTV 391
Query: 755 QVDIGNADESIVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKT 813
+ N ++ FR+S S V+F GF Y E D GA EE D+ +L L+
Sbjct: 392 TARLIN--NNVQFRASGSVVKFPGFMKVYVESKDDGA------EEKDK-----MLPPLEV 438
Query: 814 GDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSR 873
G+ ++ ++E KQH TQPP RY+E LV+ LEELGIGRPSTY TL+ +Q R YV + ++
Sbjct: 439 GETVFSKDLEPKQHFTQPPPRYTEARLVRTLEELGIGRPSTYVPTLETIQKRGYVGLDNK 498
Query: 874 ILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYC 933
P G +V + +F E+ + FTA+ME LD V G W ++ D++ F
Sbjct: 499 RFVPTELGEIVIELILEFFPEIINIEFTANMEQSLDEVEEGNANWVKIVDDFYVGFEPRL 558
Query: 934 TCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQH 993
A+ + +VE + ++ G+ C +C ++FK+ ++G F+ C+
Sbjct: 559 EKAEK-EMREVE-IKDEPAGED-----------CELCNH-PMVFKMGKYGK--FMACSNF 602
Query: 994 PRC 996
P C
Sbjct: 603 PDC 605
Score = 71 (30.1 bits), Expect = 5.3e-79, Sum P(2) = 5.3e-79
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 966 SCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
+CP C +G +I + S F GC +P C++++
Sbjct: 618 TCPKCDKGQIIERRSNKKKRLFYGCGTYPECDFVS 652
>TIGR_CMR|CHY_1794 [details] [associations]
symbol:CHY_1794 "DNA topoisomerase I" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
HOGENOM:HOG000004018 KO:K03168 OMA:EFWDIHA Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 RefSeq:YP_360614.1
ProteinModelPortal:Q3AB70 STRING:Q3AB70 GeneID:3726845
KEGG:chy:CHY_1794 PATRIC:21276699
BioCyc:CHYD246194:GJCN-1793-MONOMER Uniprot:Q3AB70
Length = 694
Score = 738 (264.8 bits), Expect = 1.6e-78, Sum P(2) = 1.6e-78
Identities = 170/431 (39%), Positives = 255/431 (59%)
Query: 367 YLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLIL 426
+LG Y V S GH+RDL V + DF+ +E+ +K +K + AE + +
Sbjct: 19 FLGKEYVVKASMGHIRDLPTYRFGVNIEKDFAPTYEIIRGKKELIKELKEEAAKAEKVYI 78
Query: 427 ASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQ 486
ASDPDREGEAIAWH+ E+L +D + ++ R+ F+EIT+ ++ A+ R ID N V
Sbjct: 79 ASDPDREGEAIAWHVKEVLDLED--NGDL---RIEFNEITKDAVLQAIANPRGIDYNRVY 133
Query: 487 AYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVE 546
A ARR LD ++G+ +SPLLWRK+ SAGRVQS A+ LIC+RE EI++F P+EYW++
Sbjct: 134 AQQARRILDRIVGYKLSPLLWRKIKKGLSAGRVQSVAVRLICEREEEIEKFVPEEYWSLT 193
Query: 547 AVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRS 606
A L+ ++ F A L+ +Q++++ I + E + I +++ +F+V+K +K+
Sbjct: 194 AHLEAEKK------PFKAKLSKYQNRKIE---IKNKDEVERIIAEVSQRDFKVVKITKKL 244
Query: 607 MVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLH 666
+ P P+ITSTLQQ+A+ +LNFSA TM++AQ LYEG+++ + GL+TY+RTD
Sbjct: 245 TKKSAPEPFITSTLQQEASKRLNFSAKKTMQIAQALYEGLEIGEYGVTGLVTYIRTDSTR 304
Query: 667 ISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA-QEAHEAIRPTDIRRLPAMLSGL 725
+++EA + + I +G + G K K K Q+AHEAIRPTDI + P +
Sbjct: 305 VAEEAKAKAAAYIKNTFGEEYV---GTEKKTKAPKGKIQDAHEAIRPTDIEKDPEKIKQY 361
Query: 726 LDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYE- 784
L D KLY LIW R +A QM A VDI D +FR++ S + F GF Y+
Sbjct: 362 LTPDQYKLYKLIWERFVASQMSDAQYDVTTVDIEAGD--YLFRATGSILRFPGFTKIYQV 419
Query: 785 DVDAGAIRYKE 795
+ + G KE
Sbjct: 420 EEEEGEKEEKE 430
Score = 652 (234.6 bits), Expect = 1.2e-68, Sum P(2) = 1.2e-68
Identities = 158/431 (36%), Positives = 237/431 (54%)
Query: 571 SKRLNQ-LSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLN 629
SK N+ + I + E + I +++ +F+V+K +K+ + P P+ITSTLQQ+A+ +LN
Sbjct: 208 SKYQNRKIEIKNKDEVERIIAEVSQRDFKVVKITKKLTKKSAPEPFITSTLQQEASKRLN 267
Query: 630 FSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAP 689
FSA TM++AQ LYEG+++ + GL+TY+RTD +++EA + + I +G +
Sbjct: 268 FSAKKTMQIAQALYEGLEIGEYGVTGLVTYIRTDSTRVAEEAKAKAAAYIKNTFGEEYV- 326
Query: 690 EEGPRKYFKKVKNA-QEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQP 748
G K K K Q+AHEAIRPTDI + P + L D KLY LIW R +A QM
Sbjct: 327 --GTEKKTKAPKGKIQDAHEAIRPTDIEKDPEKIKQYLTPDQYKLYKLIWERFVASQMSD 384
Query: 749 ATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAIL 808
A VDI D +FR++ S + F GF Y+ + +E E+ ++ + L
Sbjct: 385 AQYDVTTVDIEAGD--YLFRATGSILRFPGFTKIYQ------VEEEEGEKEEKEK----L 432
Query: 809 NSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYV 868
+L G L L ++E KQH T+PP RY+E +L+K LEE GIGRPSTYA L+ + R YV
Sbjct: 433 PALMEGQSLTLLKLEPKQHFTEPPPRYTEATLIKALEEKGIGRPSTYAPILETILKRGYV 492
Query: 869 TVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSR 928
+ L P GR+V L +F ++ D FTA+ME +LD + G W +L +++
Sbjct: 493 EKDKKQLKPTELGRIVVDLLKEHFPDIIDVEFTAEMEEKLDQIEEGEKNWIEVLRNFYEP 552
Query: 929 FSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFI 988
F+ T QS ++EK++ L + CP CG L+ + SRFG F+
Sbjct: 553 FNE--TLRQSYE--KIEKII---------LPLEETEEKCPNCGRN-LVVRTSRFGK--FL 596
Query: 989 GCNQHPRCNYI 999
C +P C +I
Sbjct: 597 ACPGYPECKFI 607
Score = 77 (32.2 bits), Expect = 1.6e-78, Sum P(2) = 1.6e-78
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 966 SCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
+CP CG G +I K S+ G F GC+ +P C++++
Sbjct: 617 TCPRCG-GEIIVKKSKKGR-VFYGCSNYPSCDFVS 649
>TIGR_CMR|SO_2705 [details] [associations]
symbol:SO_2705 "DNA topoisomerase I" species:211586
"Shewanella oneidensis MR-1" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013263 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF08272
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006265 GO:GO:0003918
SMART:SM00493 GO:GO:0003917 HOGENOM:HOG000004018 KO:K03168
OMA:EFWDIHA ProtClustDB:PRK07561 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 HSSP:P06612 RefSeq:NP_718289.1
ProteinModelPortal:Q8EDN8 SMR:Q8EDN8 GeneID:1170406
KEGG:son:SO_2705 PATRIC:23525033 Uniprot:Q8EDN8
Length = 878
Score = 424 (154.3 bits), Expect = 2.7e-75, Sum P(3) = 2.7e-75
Identities = 115/301 (38%), Positives = 168/301 (55%)
Query: 693 PRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVG 752
P +Y K + AQEAHEAIRP++++ A L+ + + D +LY LIW + ++CQM PA
Sbjct: 360 PIRYGSK-EGAQEAHEAIRPSNVKVEAAALTDM-ERDAQRLYELIWRQFVSCQMTPALYD 417
Query: 753 QIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLK 812
++ + AD + + R+ L F + V AI+ K+NEE++ L ++
Sbjct: 418 ATKLTVKAADYEL---KATGRI--LRFDG-WTRVQT-AIK-KKNEEDNT------LPAVN 463
Query: 813 TGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS 872
GD L L E+E KQH T+PPARYSE SLVK+LE+ GIGRPSTYA+ + +Q+R YV V++
Sbjct: 464 EGDVLSLVELEPKQHFTKPPARYSEASLVKELEKRGIGRPSTYATIISTIQERGYVKVEN 523
Query: 873 RILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSY 932
R Y E G +VS L + F+E+ Y FTA ME LD+V+ G +WK +L +++ F+
Sbjct: 524 RRFYAEKMGEIVSERLVNSFAELMSYDFTASMEQTLDDVAKGELDWKKVLDGFYADFTK- 582
Query: 933 CTCAQSLHIHQVEKM-LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGC 990
Q+EK L G + + CP CG I R G G F+GC
Sbjct: 583 ----------QLEKAELAPEEGGMRLNQMVMTNIKCPTCGRPMGI----RTGTTGVFLGC 628
Query: 991 N 991
+
Sbjct: 629 S 629
Score = 416 (151.5 bits), Expect = 2.7e-75, Sum P(3) = 2.7e-75
Identities = 109/344 (31%), Positives = 178/344 (51%)
Query: 378 YGHVRD---LAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREG 434
Y V+D L +R G V P+ ++ +++ +K ++ A+ + LA+D DREG
Sbjct: 66 YKKVKDHQALVSRMG-VNPEKGWAAKYQILPGKEKVVKELQALADSADQIYLATDLDREG 124
Query: 435 EAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRAL 494
EAIAWH+ E++ + ++ RVVF+EIT+++I+ A +D N+V A ARR L
Sbjct: 125 EAIAWHLQEVIGGDPSRYQ-----RVVFNEITKSAIQEAFSKPASLDTNMVNAQQARRFL 179
Query: 495 DYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKES 554
D ++GF +SPLLW+K+ SAGRVQS A+ L+ +RE EI F P+E+W V A L+ S
Sbjct: 180 DRVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVERESEIKAFVPEEFWDVHAQLNTPSS 239
Query: 555 HSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTP 614
+L + + + +A Q ++SA+F+VI ++ K P
Sbjct: 240 EALRM-----EVVKYLDSAFEPTN---EQQALAAVQALSSASFKVIAREDKATQSKPSAP 291
Query: 615 YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLH-ISDEAAK 673
+ITSTLQQ A+ +L F TM +AQ+LYE + T + + L + + K
Sbjct: 292 FITSTLQQAASTRLGFGVKKTMMMAQRLYEAGHITYMRTDS--TNLSQEALDSVREMIGK 349
Query: 674 EIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRR 717
E + + +EG ++ + ++ + EA TD+ R
Sbjct: 350 EYGAKYLPAEPIRYGSKEGAQEAHEAIRPSNVKVEAAALTDMER 393
Score = 54 (24.1 bits), Expect = 2.7e-75, Sum P(3) = 2.7e-75
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 364 IQGYLGDMYEVLPSYGHVRDLAARS 388
I YLG + V S GH+RDL S
Sbjct: 17 INKYLGKEFIVKSSVGHIRDLPTSS 41
Score = 42 (19.8 bits), Expect = 3.2e-36, Sum P(3) = 3.2e-36
Identities = 15/75 (20%), Positives = 33/75 (44%)
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G +AG + ++ + + E EI++ + E + HA P +++ + A
Sbjct: 198 GLSAGRV---QSVAVRLVVERESEIKAFVPEEFWDVHAQLNTPSSEALRMEVVKYLDSAF 254
Query: 711 RPTDIRRLPAMLSGL 725
PT+ ++ A + L
Sbjct: 255 EPTNEQQALAAVQAL 269
>UNIPROTKB|P06612 [details] [associations]
symbol:topA species:83333 "Escherichia coli K-12"
[GO:0006265 "DNA topological change" evidence=IEA;IGI] [GO:0005694
"chromosome" evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0022616 "DNA strand
elongation" evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IMP] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA;IMP] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR005733 InterPro:IPR013263
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF08272 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 EMBL:M15041 GO:GO:0006265
GO:GO:0003918 PROSITE:PS50880 SMART:SM00493 GO:GO:0022616
GO:GO:0003917 EMBL:X04475 PIR:E64875 RefSeq:NP_415790.1
RefSeq:YP_489542.1 PDB:1CY0 PDB:1CY1 PDB:1CY2 PDB:1CY4 PDB:1CY6
PDB:1CY7 PDB:1CY8 PDB:1CY9 PDB:1CYY PDB:1ECL PDB:1MW8 PDB:1MW9
PDB:1YUA PDB:3PWT PDB:3PX7 PDBsum:1CY0 PDBsum:1CY1 PDBsum:1CY2
PDBsum:1CY4 PDBsum:1CY6 PDBsum:1CY7 PDBsum:1CY8 PDBsum:1CY9
PDBsum:1CYY PDBsum:1ECL PDBsum:1MW8 PDBsum:1MW9 PDBsum:1YUA
PDBsum:3PWT PDBsum:3PX7 ProteinModelPortal:P06612 SMR:P06612
DIP:DIP-11011N IntAct:P06612 MINT:MINT-1218330 PaxDb:P06612
PRIDE:P06612 EnsemblBacteria:EBESCT00000004769
EnsemblBacteria:EBESCT00000004770 EnsemblBacteria:EBESCT00000004771
EnsemblBacteria:EBESCT00000004772 EnsemblBacteria:EBESCT00000004773
EnsemblBacteria:EBESCT00000016049 GeneID:12930585 GeneID:945862
KEGG:ecj:Y75_p1248 KEGG:eco:b1274 PATRIC:32117806 EchoBASE:EB1006
EcoGene:EG11013 eggNOG:COG0551 HOGENOM:HOG000004018 KO:K03168
OMA:EFWDIHA ProtClustDB:PRK07561 BioCyc:EcoCyc:EG11013-MONOMER
BioCyc:ECOL316407:JW1266-MONOMER BioCyc:MetaCyc:EG11013-MONOMER
EvolutionaryTrace:P06612 Genevestigator:P06612 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 Uniprot:P06612
Length = 865
Score = 415 (151.1 bits), Expect = 2.7e-71, Sum P(3) = 2.7e-71
Identities = 123/328 (37%), Positives = 169/328 (51%)
Query: 701 KNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN 760
+N+QEAHEAIRP+D+ + L + + D KLY LIW + +ACQM PA + +G
Sbjct: 359 ENSQEAHEAIRPSDVNVMAESLKDM-EADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGA 417
Query: 761 ADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLG 820
D FR +R L F + V A+R K +E DR IL ++ GD L L
Sbjct: 418 GD----FRLK-ARGRILRFDG-WTKV-MPALR-KGDE--DR-----ILPAVNKGDALTLV 462
Query: 821 EVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFR 880
E+ QH T+PPAR+SE SLVK+LE+ GIGRPSTYAS + +QDR YV V++R Y E
Sbjct: 463 ELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKM 522
Query: 881 GRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLH 940
G +V+ L F E+ +Y FTA ME LD V+ EWK +L ++S F+
Sbjct: 523 GEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQ--------Q 574
Query: 941 IHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQH---P--R 995
+ + EK E+ G + CP CG I S G F+GC+ + P R
Sbjct: 575 LDKAEKDPEE--GGMRPNQMVLTSIDCPTCGRKMGIRTAS---TGVFLGCSGYALPPKER 629
Query: 996 C---------NYIAKTLYGDDDEEDTLQ 1014
C N + L G+D E + L+
Sbjct: 630 CKTTINLVPENEVLNVLEGEDAETNALR 657
Score = 380 (138.8 bits), Expect = 2.7e-71, Sum P(3) = 2.7e-71
Identities = 94/261 (36%), Positives = 143/261 (54%)
Query: 384 LAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVE 443
L R G V P ++ +EV + +K A+++ LA+D DREGEAIAWH+ E
Sbjct: 67 LVNRMG-VDPWHNWEAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLRE 125
Query: 444 MLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNIS 503
++ DA + +RVVF+EIT+ +I+ A E++ + V A ARR +D ++G+ +S
Sbjct: 126 VIGGDDARY-----SRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVS 180
Query: 504 PLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFP 563
PLLW+K+ SAGRVQS A+ L+ +RE EI F P+E+W V+A +L
Sbjct: 181 PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEAL-----A 235
Query: 564 AHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQD 623
+TH K ++ A + +K A + V++ + K P+ITSTLQQ
Sbjct: 236 LQVTHQNDKPFRPVNKEQTQAAVSLLEK---ARYSVLEREDKPTTSKPGAPFITSTLQQA 292
Query: 624 AANKLNFSATYTMKLAQKLYE 644
A+ +L F TM +AQ+LYE
Sbjct: 293 ASTRLGFGVKKTMMMAQRLYE 313
Score = 319 (117.4 bits), Expect = 4.5e-61, Sum P(4) = 4.5e-61
Identities = 112/390 (28%), Positives = 181/390 (46%)
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A + V++ + K P+ITSTLQQ A+ +L F TM +AQ+LYE
Sbjct: 261 LEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYE------- 313
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTD ++S +A +R I + +G + PE P +Y K +N+QEAHEAIR
Sbjct: 314 --AGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPES-PNQYASK-ENSQEAHEAIR 369
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
P+D+ + L + + D KLY LIW + +ACQM PA + +G D + R
Sbjct: 370 PSDVNVMAESLKDM-EADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRI 428
Query: 772 SRVE-FLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLK-TGDPLYLGEV----ELK 825
R + + A D I N+ D + + T P E EL+
Sbjct: 429 LRFDGWTKVMPALRKGDEDRILPAVNK-GDALTLVELTPAQHFTKPPARFSEASLVKELE 487
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPST---YASTL-KVLQDRNYVTVKSRILYPEFRG 881
+ P+ Y+ S++ +++ G R YA + +++ DR + + Y +F
Sbjct: 488 KRGIGRPSTYA--SIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY-DFTA 544
Query: 882 RMVSAF--LSHYFSE---VTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYC-TC 935
+M ++ ++++ +E V D+ F+ D +LD E G+ + S C TC
Sbjct: 545 QMENSLDQVANHEAEWKAVLDHFFS-DFTQQLDKAEKDPEEG-GMRPNQMVLTSIDCPTC 602
Query: 936 AQSLHIHQVEKMLEKTFGDSLFASLPNKDR 965
+ + I + G S +A LP K+R
Sbjct: 603 GRKMGIRTASTGV--FLGCSGYA-LPPKER 629
Score = 61 (26.5 bits), Expect = 2.7e-71, Sum P(3) = 2.7e-71
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 364 IQGYLGDMYEVLPSYGHVRDLAARSGS 390
I YLG Y V S GH+RDL SGS
Sbjct: 17 INKYLGSDYVVKSSVGHIRDLPT-SGS 42
Score = 45 (20.9 bits), Expect = 4.5e-61, Sum P(4) = 4.5e-61
Identities = 32/139 (23%), Positives = 47/139 (33%)
Query: 967 CPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIG 1026
C CG + K+ RFG ++ C C K L E + V P+L
Sbjct: 711 CEKCGS-EMHLKMGRFGK--YMACTNE-ECKNTRKILRNG---EVAPPKEDPVPLPEL-- 761
Query: 1027 HHPASKEKV--LLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDAL-ELLRYP 1083
P K +L+ G G ++ PK + D L E LRY
Sbjct: 762 --PCEKSDAYFVLRDGAAGVFLAANT-----FPKSRETRAPLVEELYRFRDRLPEKLRYL 814
Query: 1084 VNLGNHPKDGQPIMLRLAR 1102
+ +G M+R +R
Sbjct: 815 ADAPQQDPEGNKTMVRFSR 833
Score = 40 (19.1 bits), Expect = 1.5e-60, Sum P(4) = 1.5e-60
Identities = 23/112 (20%), Positives = 42/112 (37%)
Query: 935 CAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHP 994
C ++++ ++L G+ + R CP CG + + + C +P
Sbjct: 630 CKTTINLVPENEVLNVLEGEDAETNALRAKRRCPKCGTAMDSYLIDPKRKLHV--CGNNP 687
Query: 995 RCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYV 1046
C+ G + EE R D P ++ E + LK G +G Y+
Sbjct: 688 TCD-------GYEIEEGEF-RIKGYDGP-IVECEKCGSE-MHLKMGRFGKYM 729
>UNIPROTKB|Q9KRB2 [details] [associations]
symbol:topA "DNA topoisomerase 1" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003917 "DNA
topoisomerase type I activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013263 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 Pfam:PF08272 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0046872
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006265 GO:GO:0003918
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
KO:K03168 OMA:EFWDIHA ProtClustDB:PRK07561 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 PIR:B82163 RefSeq:NP_231366.1
ProteinModelPortal:Q9KRB2 SMR:Q9KRB2 DNASU:2613735 GeneID:2613735
KEGG:vch:VC1730 PATRIC:20082518 Uniprot:Q9KRB2
Length = 876
Score = 371 (135.7 bits), Expect = 5.0e-61, Sum P(3) = 5.0e-61
Identities = 88/224 (39%), Positives = 130/224 (58%)
Query: 421 AENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREI 480
A+++ LA+D DREGEAIAWH+ E++ + ++ RVVF+EIT+ +I+ A + E+
Sbjct: 111 ADSVYLATDLDREGEAIAWHLREIIGGDEKRYK-----RVVFNEITKNAIQQAFKQPGEL 165
Query: 481 DANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQ 540
+ + V A ARR +D ++GF +SPLLW+K+ SAGRVQS A+ L+ +RE EI F P+
Sbjct: 166 NMDGVNAQQARRFMDRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPE 225
Query: 541 EYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVI 600
E+W + A D + D A K +N+ TEA +N A ++V
Sbjct: 226 EFWDINA--DTLTADKQDFRLLVAQKDGLAFKPVNE------TEALAAVAALNKAQYEVC 277
Query: 601 KNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYE 644
K + K P+ITSTLQQ A+ +L + TM LAQ+LYE
Sbjct: 278 KREDKPTTSKPSAPFITSTLQQAASTRLGYGVKKTMMLAQRLYE 321
Score = 336 (123.3 bits), Expect = 5.0e-61, Sum P(3) = 5.0e-61
Identities = 95/293 (32%), Positives = 146/293 (49%)
Query: 726 LDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYED 785
++ D KLY+LIW++ +ACQM PA V + A+ ++ + ++F G+
Sbjct: 391 MEADAHKLYALIWNQFVACQMTPAQYDSTTVSVKAAEYTLKAKGRI--LKFDGWTRVQRP 448
Query: 786 VDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLE 845
+ +NE+ IL +K GD L L ++ KQH T+PPARY+E +LVK+LE
Sbjct: 449 LG-------KNEDQ-------ILPPVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKELE 494
Query: 846 ELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADME 905
+ GIGRPSTYAS + +QDR YV V R + E G +V+ L F ++ +Y FTA ME
Sbjct: 495 KRGIGRPSTYASIISTIQDRGYVKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARME 554
Query: 906 TELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDR 965
+LD ++ G W +L ++++ FS A+ +++ G + +
Sbjct: 555 EKLDQIAEGEVNWTAVLDEFFADFSRDLETAEQ----------DESLGGMKPNHIVMTNI 604
Query: 966 SCPVCGEGTLIFKVSRFGAGYFIGCNQH---P--RCNYIAKTLYGDDDEEDTL 1013
CP C I S G F+GC+ + P RC KT DEE +
Sbjct: 605 LCPTCSRPMGIRTAS---TGVFLGCSGYGLPPKERC----KTTINLGDEEGVI 650
Score = 322 (118.4 bits), Expect = 1.2e-55, Sum P(3) = 1.2e-55
Identities = 75/185 (40%), Positives = 105/185 (56%)
Query: 581 SHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQ 640
+ TEA +N A ++V K + K P+ITSTLQQ A+ +L + TM LAQ
Sbjct: 258 NETEALAAVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQQAASTRLGYGVKKTMMLAQ 317
Query: 641 KLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKV 700
+LYE AG ITYMRTD ++S EA + +R I + YG + P + P Y K
Sbjct: 318 RLYE---------AGYITYMRTDSTNLSAEAVENLRGYITKHYGEAYLPSQ-PNVYGSK- 366
Query: 701 KNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN 760
+NAQEAHEAIRP+D+ L G+ + D KLY+LIW++ +ACQM PA V +
Sbjct: 367 QNAQEAHEAIRPSDVTVTADDLEGM-EADAHKLYALIWNQFVACQMTPAQYDSTTVSVKA 425
Query: 761 ADESI 765
A+ ++
Sbjct: 426 AEYTL 430
Score = 55 (24.4 bits), Expect = 5.0e-61, Sum P(3) = 5.0e-61
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 364 IQGYLGDMYEVLPSYGHVRDLAARSGSVRP 393
I YLG + V S GHVRDL + P
Sbjct: 17 INKYLGKDFIVKSSVGHVRDLPTAGQTATP 46
Score = 53 (23.7 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 31/136 (22%), Positives = 50/136 (36%)
Query: 967 CPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIG 1026
C CG ++ K RFG ++GC + C K L + E + V P+L
Sbjct: 717 CDKCGSD-MVLKNGRFGK--YMGCT-NDACKNTRKIL---KNGEVAPPKEEPVHFPELPC 769
Query: 1027 HHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNL 1086
+ S +L+ G G + + V +K E E +Y +
Sbjct: 770 EN--SDAYFVLRDGASGLFFAASNFPKSRETRAPLVEELKRF----AERLPEKYQYLTSA 823
Query: 1087 GNHPKDGQPIMLRLAR 1102
H DG P ++R +R
Sbjct: 824 PAHDPDGLPAVVRFSR 839
>TIGR_CMR|VC_1730 [details] [associations]
symbol:VC_1730 "DNA topoisomerase I" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR005733 InterPro:IPR013263
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF08272 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006265 GO:GO:0003918 PROSITE:PS50880 SMART:SM00493
GO:GO:0003917 eggNOG:COG0551 KO:K03168 OMA:EFWDIHA
ProtClustDB:PRK07561 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
TIGRFAMs:TIGR01051 PIR:B82163 RefSeq:NP_231366.1
ProteinModelPortal:Q9KRB2 SMR:Q9KRB2 DNASU:2613735 GeneID:2613735
KEGG:vch:VC1730 PATRIC:20082518 Uniprot:Q9KRB2
Length = 876
Score = 371 (135.7 bits), Expect = 5.0e-61, Sum P(3) = 5.0e-61
Identities = 88/224 (39%), Positives = 130/224 (58%)
Query: 421 AENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREI 480
A+++ LA+D DREGEAIAWH+ E++ + ++ RVVF+EIT+ +I+ A + E+
Sbjct: 111 ADSVYLATDLDREGEAIAWHLREIIGGDEKRYK-----RVVFNEITKNAIQQAFKQPGEL 165
Query: 481 DANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQ 540
+ + V A ARR +D ++GF +SPLLW+K+ SAGRVQS A+ L+ +RE EI F P+
Sbjct: 166 NMDGVNAQQARRFMDRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPE 225
Query: 541 EYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVI 600
E+W + A D + D A K +N+ TEA +N A ++V
Sbjct: 226 EFWDINA--DTLTADKQDFRLLVAQKDGLAFKPVNE------TEALAAVAALNKAQYEVC 277
Query: 601 KNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYE 644
K + K P+ITSTLQQ A+ +L + TM LAQ+LYE
Sbjct: 278 KREDKPTTSKPSAPFITSTLQQAASTRLGYGVKKTMMLAQRLYE 321
Score = 336 (123.3 bits), Expect = 5.0e-61, Sum P(3) = 5.0e-61
Identities = 95/293 (32%), Positives = 146/293 (49%)
Query: 726 LDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYED 785
++ D KLY+LIW++ +ACQM PA V + A+ ++ + ++F G+
Sbjct: 391 MEADAHKLYALIWNQFVACQMTPAQYDSTTVSVKAAEYTLKAKGRI--LKFDGWTRVQRP 448
Query: 786 VDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLE 845
+ +NE+ IL +K GD L L ++ KQH T+PPARY+E +LVK+LE
Sbjct: 449 LG-------KNEDQ-------ILPPVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKELE 494
Query: 846 ELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADME 905
+ GIGRPSTYAS + +QDR YV V R + E G +V+ L F ++ +Y FTA ME
Sbjct: 495 KRGIGRPSTYASIISTIQDRGYVKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARME 554
Query: 906 TELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDR 965
+LD ++ G W +L ++++ FS A+ +++ G + +
Sbjct: 555 EKLDQIAEGEVNWTAVLDEFFADFSRDLETAEQ----------DESLGGMKPNHIVMTNI 604
Query: 966 SCPVCGEGTLIFKVSRFGAGYFIGCNQH---P--RCNYIAKTLYGDDDEEDTL 1013
CP C I S G F+GC+ + P RC KT DEE +
Sbjct: 605 LCPTCSRPMGIRTAS---TGVFLGCSGYGLPPKERC----KTTINLGDEEGVI 650
Score = 322 (118.4 bits), Expect = 1.2e-55, Sum P(3) = 1.2e-55
Identities = 75/185 (40%), Positives = 105/185 (56%)
Query: 581 SHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQ 640
+ TEA +N A ++V K + K P+ITSTLQQ A+ +L + TM LAQ
Sbjct: 258 NETEALAAVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQQAASTRLGYGVKKTMMLAQ 317
Query: 641 KLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKV 700
+LYE AG ITYMRTD ++S EA + +R I + YG + P + P Y K
Sbjct: 318 RLYE---------AGYITYMRTDSTNLSAEAVENLRGYITKHYGEAYLPSQ-PNVYGSK- 366
Query: 701 KNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN 760
+NAQEAHEAIRP+D+ L G+ + D KLY+LIW++ +ACQM PA V +
Sbjct: 367 QNAQEAHEAIRPSDVTVTADDLEGM-EADAHKLYALIWNQFVACQMTPAQYDSTTVSVKA 425
Query: 761 ADESI 765
A+ ++
Sbjct: 426 AEYTL 430
Score = 55 (24.4 bits), Expect = 5.0e-61, Sum P(3) = 5.0e-61
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 364 IQGYLGDMYEVLPSYGHVRDLAARSGSVRP 393
I YLG + V S GHVRDL + P
Sbjct: 17 INKYLGKDFIVKSSVGHVRDLPTAGQTATP 46
Score = 53 (23.7 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 31/136 (22%), Positives = 50/136 (36%)
Query: 967 CPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIG 1026
C CG ++ K RFG ++GC + C K L + E + V P+L
Sbjct: 717 CDKCGSD-MVLKNGRFGK--YMGCT-NDACKNTRKIL---KNGEVAPPKEEPVHFPELPC 769
Query: 1027 HHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNL 1086
+ S +L+ G G + + V +K E E +Y +
Sbjct: 770 EN--SDAYFVLRDGASGLFFAASNFPKSRETRAPLVEELKRF----AERLPEKYQYLTSA 823
Query: 1087 GNHPKDGQPIMLRLAR 1102
H DG P ++R +R
Sbjct: 824 PAHDPDGLPAVVRFSR 839
>TIGR_CMR|CPS_1197 [details] [associations]
symbol:CPS_1197 "DNA topoisomerase I" species:167879
"Colwellia psychrerythraea 34H" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013263 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF08272
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006265 GO:GO:0003918
SMART:SM00493 GO:GO:0003917 eggNOG:COG0551 HOGENOM:HOG000004018
KO:K03168 OMA:EFWDIHA ProtClustDB:PRK07561 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 RefSeq:YP_267940.1
ProteinModelPortal:Q486S5 SMR:Q486S5 STRING:Q486S5 GeneID:3521498
KEGG:cps:CPS_1197 PATRIC:21465639
BioCyc:CPSY167879:GI48-1278-MONOMER Uniprot:Q486S5
Length = 899
Score = 370 (135.3 bits), Expect = 2.0e-60, Sum P(3) = 2.0e-60
Identities = 97/261 (37%), Positives = 141/261 (54%)
Query: 384 LAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVE 443
L R G + PD +++ +++ + +K A+ + LA+D DREGEAIAWH+ E
Sbjct: 74 LVNRMG-IDPDKNWAADYQILPGKEKVVAELKKLADKADIVYLATDLDREGEAIAWHLKE 132
Query: 444 MLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNIS 503
++ +D E RVVF+EITE+SI+ A E+ V A ARR LD ++GF +S
Sbjct: 133 IIGGED---EKFR--RVVFNEITESSIQQAFATPGELSMPGVNAQQARRFLDRVVGFMVS 187
Query: 504 PLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFP 563
PLLW+K+ SAGRVQS A+ L+ ++E EI F P+E+W + AV ++H+
Sbjct: 188 PLLWKKVARGLSAGRVQSVAVKLVVEKEREIKAFDPKEFWEI-AV----DTHASTGEVLT 242
Query: 564 AHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQD 623
+TH K + A I + A++ V K R P+ITSTLQQ
Sbjct: 243 LDVTHENGKAFKPTTEKETNAALAI---LKPADYAVSKREDRPSKSTPSAPFITSTLQQA 299
Query: 624 AANKLNFSATYTMKLAQKLYE 644
A+ KL + TM LAQ+LYE
Sbjct: 300 ASTKLGYGVKRTMGLAQRLYE 320
Score = 333 (122.3 bits), Expect = 2.0e-60, Sum P(3) = 2.0e-60
Identities = 87/267 (32%), Positives = 136/267 (50%)
Query: 726 LDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYED 785
++ D KLY LIW + +ACQM A + I A S ++ ++F G+ +
Sbjct: 390 IEADAKKLYELIWRQFVACQMTAARYTVSTLTISAA--SFDLKAKGRVMQFDGWTIVHPQ 447
Query: 786 VDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLE 845
+ G +D H L L+ G+ L L ++E QH T+PPAR+ E SLVK+LE
Sbjct: 448 LSKG---------DDTH-----LPDLQVGEALTLDKIEPSQHFTKPPARFGEASLVKELE 493
Query: 846 ELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADME 905
+ IGRPSTYAS + +QDR YV + + Y E G +V+ LS F ++ Y FT++ME
Sbjct: 494 KRSIGRPSTYASIISTIQDRGYVRLDKKRFYAEKMGEIVTNSLSGSFEKLMSYEFTSNME 553
Query: 906 TELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPN-KD 964
ELD ++ G +WKG+L +++ F+ Q+ K + + + + P D
Sbjct: 554 QELDEIAGGSADWKGVLDEFYKNFTK-----------QLSKADQPSEDGGMQTNEPVLTD 602
Query: 965 RSCPVCGEGTLIFKVSRFGAGYFIGCN 991
CP C I + ++ G F+GC+
Sbjct: 603 IDCPTCNRKMGI-RTAQ--TGVFLGCS 626
Score = 281 (104.0 bits), Expect = 8.7e-21, Sum P(2) = 8.7e-21
Identities = 69/173 (39%), Positives = 96/173 (55%)
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A++ V K R P+ITSTLQQ A+ KL + TM LAQ+LYE
Sbjct: 268 LKPADYAVSKREDRPSKSTPSAPFITSTLQQAASTKLGYGVKRTMGLAQRLYE------- 320
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTD ++S +A + R I + +G ++ PE + Y K AQEAHEAIR
Sbjct: 321 --AGHITYMRTDSTNLSKDAVEMCRKYISDSFGDNYLPENA-KTYGSKA-GAQEAHEAIR 376
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPA--TVGQIQVDIGNAD 762
P++++ A L G+ + D KLY LIW + +ACQM A TV + + + D
Sbjct: 377 PSNVKLEAAFLEGI-EADAKKLYELIWRQFVACQMTAARYTVSTLTISAASFD 428
Score = 54 (24.1 bits), Expect = 2.0e-60, Sum P(3) = 2.0e-60
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 364 IQGYLGDMYEVLPSYGHVRDL 384
I YLG+ + V S GHVRDL
Sbjct: 17 INKYLGNDFIVKSSVGHVRDL 37
>UNIPROTKB|Q2GG88 [details] [associations]
symbol:ECH_0746 "Topoisomerase DNA-binding C4 zinc finger
domain protein" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR013498 Pfam:PF01396 GO:GO:0005694 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006265 GO:GO:0003916
eggNOG:COG1754 RefSeq:YP_507545.1 ProteinModelPortal:Q2GG88
STRING:Q2GG88 GeneID:3928036 KEGG:ech:ECH_0746 PATRIC:20576932
OMA:WERFSKY BioCyc:ECHA205920:GJNR-749-MONOMER Uniprot:Q2GG88
Length = 260
Score = 316 (116.3 bits), Expect = 4.7e-27, P = 4.7e-27
Identities = 71/229 (31%), Positives = 120/229 (52%)
Query: 908 LDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKD-RS 966
+D +S G WK +L +W F + L +V K++ + +F+S ++ R
Sbjct: 1 MDLISNGKINWKEVLHQFWFLFIDNVNSVKKLEFTEVLKVISCEMENYIFSSDKSESSRV 60
Query: 967 CPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIG 1026
CPVC +GTL +S+ G F+GC+++P C Y G D+ D N PK++G
Sbjct: 61 CPVCNDGTLELNISK--NGIFLGCSKYPECKYTKNVGSGIVDDTD------NTQYPKILG 112
Query: 1027 HHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNL 1086
A+ +++ LK GPYG Y+Q+G D++G KRA++ D + + L+ A ++L P++L
Sbjct: 113 IDAATGQEIYLKKGPYGLYLQIGNDKSG---KRAAIPKNIDANLLDLQMAEKILSLPISL 169
Query: 1087 GNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLS 1135
G HP GQ I L L + G + + SV D+++E A+ ++
Sbjct: 170 GTHPDTGQEIKLGLGKFGAYILYGGKYFSVKNEHNFLDISIENAINIIA 218
>TIGR_CMR|ECH_0746 [details] [associations]
symbol:ECH_0746 "topoisomerase DNA-binding C4 zinc finger
domain protein" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0003677 "DNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR013498 Pfam:PF01396
GO:GO:0005694 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006265
GO:GO:0003916 eggNOG:COG1754 RefSeq:YP_507545.1
ProteinModelPortal:Q2GG88 STRING:Q2GG88 GeneID:3928036
KEGG:ech:ECH_0746 PATRIC:20576932 OMA:WERFSKY
BioCyc:ECHA205920:GJNR-749-MONOMER Uniprot:Q2GG88
Length = 260
Score = 316 (116.3 bits), Expect = 4.7e-27, P = 4.7e-27
Identities = 71/229 (31%), Positives = 120/229 (52%)
Query: 908 LDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKD-RS 966
+D +S G WK +L +W F + L +V K++ + +F+S ++ R
Sbjct: 1 MDLISNGKINWKEVLHQFWFLFIDNVNSVKKLEFTEVLKVISCEMENYIFSSDKSESSRV 60
Query: 967 CPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIG 1026
CPVC +GTL +S+ G F+GC+++P C Y G D+ D N PK++G
Sbjct: 61 CPVCNDGTLELNISK--NGIFLGCSKYPECKYTKNVGSGIVDDTD------NTQYPKILG 112
Query: 1027 HHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNL 1086
A+ +++ LK GPYG Y+Q+G D++G KRA++ D + + L+ A ++L P++L
Sbjct: 113 IDAATGQEIYLKKGPYGLYLQIGNDKSG---KRAAIPKNIDANLLDLQMAEKILSLPISL 169
Query: 1087 GNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLS 1135
G HP GQ I L L + G + + SV D+++E A+ ++
Sbjct: 170 GTHPDTGQEIKLGLGKFGAYILYGGKYFSVKNEHNFLDISIENAINIIA 218
>TIGR_CMR|BA_0375 [details] [associations]
symbol:BA_0375 "DNA topoisomerase III" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005738 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 RefSeq:NP_842919.1
RefSeq:YP_016995.1 RefSeq:YP_026641.1 HSSP:P14294
ProteinModelPortal:Q81Z97 IntAct:Q81Z97 DNASU:1084121
EnsemblBacteria:EBBACT00000010088 EnsemblBacteria:EBBACT00000017365
EnsemblBacteria:EBBACT00000020979 GeneID:1084121 GeneID:2819802
GeneID:2849354 KEGG:ban:BA_0375 KEGG:bar:GBAA_0375 KEGG:bat:BAS0361
HOGENOM:HOG000086847 KO:K03169 OMA:LSNRRCP ProtClustDB:PRK07726
BioCyc:BANT260799:GJAJ-403-MONOMER
BioCyc:BANT261594:GJ7F-413-MONOMER TIGRFAMs:TIGR01056
Uniprot:Q81Z97
Length = 729
Score = 205 (77.2 bits), Expect = 6.2e-22, Sum P(2) = 6.2e-22
Identities = 83/295 (28%), Positives = 132/295 (44%)
Query: 366 GYL-GDMYEVLPSYGHVRDLA-ARSGSVRPD----DDFSMVWE-----VPSAAWTHLKSI 414
GYL G Y V + GH+ LA S V+ +D M+ E V ++
Sbjct: 29 GYLEGSKYIVTWALGHLVTLADPESYDVKYKKWNLEDLPMLPERLKLTVIKQTGKQFNAV 88
Query: 415 KVAL--SGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK- 471
K L +I+A+D REGE +A I+ D + N + R+ +T+ +IK
Sbjct: 89 KSQLLRKDVNEIIVATDAGREGELVARWII------DKVRINKPIKRLWISSVTDKAIKD 142
Query: 472 --VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
L+ + D NL + +AR D+ IG N + L + + GRVQ+ +++I +
Sbjct: 143 GFANLKPGKAYD-NLYASAVARSEADWYIGLNATRALTTRFNAQLNCGRVQTPTVAMIAN 201
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI FK Q Y+ +EA + + + S+ N+ I + D
Sbjct: 202 REDEIKNFKAQTYYGIEA-------QTTNQLKLTWQDANGNSRSFNKEKIDGIVKGLD-- 252
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYE 644
K N+ ++ K K+S +P Y + LQ+DA K +SA T+ + QKLYE
Sbjct: 253 -KHNATVLEIDKKQKKSF---SPGLYDLTELQRDANKKFGYSAKETLNIMQKLYE 303
Score = 144 (55.7 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 69/285 (24%), Positives = 128/285 (44%)
Query: 588 IEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
I + ++ N V++ K+ +P Y + LQ+DA K +SA T+ + QKLYE +
Sbjct: 247 IVKGLDKHNATVLEIDKKQKKSFSPGLYDLTELQRDANKKFGYSAKETLNIMQKLYEQHK 306
Query: 648 LPDGTAAGLITYMRTDGLHISDEAA----KEIRSLIFERYGS-HHAPEEGPRKYFKK-VK 701
+ +TY RTD +IS + + +++ Y H + P K K V
Sbjct: 307 V--------LTYPRTDSRYISSDIVGTLPERLKACGVGEYRPLAHKVLQKPIKANKSFVD 358
Query: 702 NAQEA-HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN 760
+++ + H AI PT+ S D++ K+Y L+ R +A Q+ +
Sbjct: 359 DSKVSDHHAIIPTEGY---VNFSAFTDKE-RKIYDLVVKRFLAVLFPAFEYEQLTLRTKV 414
Query: 761 ADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLG 820
+E+ + R + G++ YE+ R+++++ D + +L ++ GD L +
Sbjct: 415 GNETFIARGKT--ILHAGWKEVYEN------RFEDDDVTDDVKE-QLLPRIEKGDTLTVK 465
Query: 821 EVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTL-KVLQD 864
+ T+ PAR++E +L+ +E P+ Y T K L D
Sbjct: 466 LIMQTSGQTKAPARFNEATLLSAMEN-----PTKYMDTQNKQLAD 505
Score = 141 (54.7 bits), Expect = 6.2e-22, Sum P(2) = 6.2e-22
Identities = 95/403 (23%), Positives = 166/403 (41%)
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
K N+ ++ K K+S +P Y + LQ+DA K +SA T+ + QKLYE ++
Sbjct: 253 KHNATVLEIDKKQKKSF---SPGLYDLTELQRDANKKFGYSAKETLNIMQKLYEQHKV-- 307
Query: 651 GTAAGLITYMRTDGLHISDEAA----KEIRSLIFERYGS-HHAPEEGPRKYFKK-VKNAQ 704
+TY RTD +IS + + +++ Y H + P K K V +++
Sbjct: 308 ------LTYPRTDSRYISSDIVGTLPERLKACGVGEYRPLAHKVLQKPIKANKSFVDDSK 361
Query: 705 EA-HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADE 763
+ H AI PT+ S D++ K+Y L+ R +A Q+ + +E
Sbjct: 362 VSDHHAIIPTEGY---VNFSAFTDKE-RKIYDLVVKRFLAVLFPAFEYEQLTLRTKVGNE 417
Query: 764 SIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVE 823
+ + R + G++ YE+ R+++++ D + +L ++ GD L + +
Sbjct: 418 TFIARGKT--ILHAGWKEVYEN------RFEDDDVTDDVKE-QLLPRIEKGDTLTVKLIM 468
Query: 824 LKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTL-KVLQDRNYVTVKSR--ILYPEFR 880
T+ PAR++E +L+ +E P+ Y T K L D T+KS + R
Sbjct: 469 QTSGQTKAPARFNEATLLSAMEN-----PTKYMDTQNKQLAD----TLKSTGGLGTVATR 519
Query: 881 GRMVSAFLSHYFSEVT--DYSFTADMETELDNV-----SAGLT-EWKGLLVDYWSRFSSY 932
++ + + E D T+ LD V S LT EW+ L
Sbjct: 520 ADIIDKLFNSFLIEKRGKDIHITSKGRQLLDLVPEELKSPTLTGEWEQKLEAIAKGKLKK 579
Query: 933 CTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTL 975
+ + E + E D + +SCP CG+ L
Sbjct: 580 EVFISEMKNYTKEIVSEIKSSDKKYKHDNISTKSCPDCGKPML 622
>ZFIN|ZDB-GENE-071212-2 [details] [associations]
symbol:top3a "topoisomerase (DNA) III alpha"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA] [GO:0003917
"DNA topoisomerase type I activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] InterPro:IPR000380 InterPro:IPR001878
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR010666
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
ZFIN:ZDB-GENE-071212-2 GO:GO:0005694 GO:GO:0008270 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
Gene3D:1.10.290.10 EMBL:BX649547 EMBL:BX649440 IPI:IPI00489703
ProteinModelPortal:F1R242 Ensembl:ENSDART00000102492 Bgee:F1R242
Uniprot:F1R242
Length = 1009
Score = 205 (77.2 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 95/356 (26%), Positives = 157/356 (44%)
Query: 424 LILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDAN 483
LI+ +D DREGE I + I+++ + A+ NI V R F EIT SI+ A + E D N
Sbjct: 140 LIVWTDCDREGENIGFEIIDVCK---AVKPNIQVFRARFSEITPNSIRRACETLTEPDIN 196
Query: 484 LVQAYLARRALDYLIGFNIS---PLLWRKL-PGCQSA-----GRVQSAALSLICDREMEI 534
+ A R+ LD IG + + L +K+ P S G Q L + +R I
Sbjct: 197 VSDAVDVRQELDLRIGASFTRFQTLRLQKIFPESLSDQLISYGSCQFPTLGFVVERFKAI 256
Query: 535 DEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK-IN 593
F P+ ++ ++ V + E S++ F++ H RL +HT + Q +
Sbjct: 257 QAFIPETFFKIKVVHEPNEEESVE-FNWKRH-------RLF-----NHTACLVLYQMCME 303
Query: 594 SANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTA 653
+VI + + + P P T L++ A+ KL SA TMK+A+KLY
Sbjct: 304 EPMAKVISVTSKPKSKWRPLPLDTVELEKLASRKLRISAKETMKIAEKLY---------T 354
Query: 654 AGLITYMRTD------GLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
G I+Y RT+ L+++ ++ + + + GP + + +AH
Sbjct: 355 QGFISYPRTETNMFPQNLNLTRLVEQQTQDQEWGNFAQRILESGGPTP--RNGNKSDQAH 412
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADE 763
I PT +GL + +LY I +AC + A ++ V+I A+E
Sbjct: 413 PPIHPTKYT------NGLQGNE-KRLYEFIVRHFLACCSKDAQGQEVTVEIDIAEE 461
Score = 131 (51.2 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 42/186 (22%), Positives = 83/186 (44%)
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYV--TVKSRILYPEF 879
+E+ + T PP +E L+ +E+ GIG +T+A ++ ++ R YV T R L E
Sbjct: 503 IEMVEGQTSPPQLLTEADLISLMEKHGIGTDATHAEHIETIKSRMYVGLTADQRFLPGEL 562
Query: 880 RGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSL 939
+V + S + E++ A++E +L VS G +L + +++ + +S+
Sbjct: 563 GMGLVEGYNSMGY-EMSKPDLRAELEADLKLVSEGRKNKASVLSYHVAKYKA--VFIESV 619
Query: 940 H-IHQVEKMLEKTFG--------DSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGC 990
++++ L G + + +P R CP C ++ K + G + C
Sbjct: 620 RKAKKLDEALSNYLGPAQEIAEQEQVELEIPLPVRKCPQCNRD-MVLKKKKDSTGMLLSC 678
Query: 991 NQHPRC 996
+P C
Sbjct: 679 LGYPAC 684
>TIGR_CMR|SO_3061 [details] [associations]
symbol:SO_3061 "DNA topoisomerase III" species:211586
"Shewanella oneidensis MR-1" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005738 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 HSSP:P14294 KO:K03169
ProtClustDB:PRK07726 TIGRFAMs:TIGR01056 HOGENOM:HOG000086848
OMA:AANGDCV RefSeq:NP_718626.1 ProteinModelPortal:Q8ECS1 SMR:Q8ECS1
GeneID:1170747 KEGG:son:SO_3061 PATRIC:23525760 Uniprot:Q8ECS1
Length = 702
Score = 275 (101.9 bits), Expect = 5.6e-19, Sum P(2) = 5.6e-19
Identities = 130/491 (26%), Positives = 222/491 (45%)
Query: 401 WEV-PSAAW-THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQ-DALHENITV 457
W++ P AA + L +K + A+ L+ A DPDREG+ + ++ L D L +
Sbjct: 73 WQLKPKAATRSQLTVLKKLIKQADTLVNAGDPDREGQLLVDEVIAYLGVTGDKLQQT--- 129
Query: 458 ARVVFHEITEASIKVAL---QAAREIDANLVQAYLARRALDYLIGFNIS---PLLWRKL- 510
R++ ++ ++K AL ++ RE L + LAR D+L G N++ + +K+
Sbjct: 130 QRLLISDLNPQAVKRALSQLRSNREF-IPLSTSALARSRADWLYGMNMTRAYTIQGKKVG 188
Query: 511 -PGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEA--VLDKKESHSLDTFSFPAHLT 567
G S GRVQ+ L LI R+ EI F+ + ++ V A V DK++ S A
Sbjct: 189 YQGVLSVGRVQTPLLGLIVRRDEEIAHFQSKPFYEVLAHLVTDKQQFFSAKWQPSEACQP 248
Query: 568 HFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANK 627
+ + LS G A+++ ++I +V + S + + P PY S LQ DAA +
Sbjct: 249 YMDDEG-RVLSKGL---AQNVVRRITDKPAKVTQLSTKDKQQSAPLPYSLSALQIDAAKR 304
Query: 628 LNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEA---AKEIRSLIFERYG 684
SA + Q LYE +L ITY R+D ++ E A + + I
Sbjct: 305 FGMSAKEVLDTCQSLYERHKL--------ITYPRSDSRYLPTEQHGLASSVLNAITSGAP 356
Query: 685 SHHAPEEGPRKYFK-KVKNAQ--EAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRT 741
A E P K K + + +AH AI PT+ + P + G L + +LY I +R
Sbjct: 357 ELVAHSEAPNPRLKSKAWDDKKVDAHHAIIPTE--KQPNL--GSLSQRERQLYLHI-ARQ 411
Query: 742 MACQMQPA-TVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAY-------EDVDAGAIRY 793
Q PA + V++ E +F++ + + LG++ + +D
Sbjct: 412 YLAQFYPAYCYSETAVEV--TIEGGLFKTKARQDKSLGWKQLFAREEGERKDTSNTETFA 469
Query: 794 KENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPS 853
+++++ D E L L G L+ + EL + TQPP +++ +L+ + GI R
Sbjct: 470 QDDKDKDEGEYAGQLPPLILGQVLHCNQGELVEKQTQPPKAFTDATLLGAMT--GINRYV 527
Query: 854 TYASTLKVLQD 864
T K+L++
Sbjct: 528 TDPEIRKILKE 538
Score = 39 (18.8 bits), Expect = 5.6e-19, Sum P(2) = 5.6e-19
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 834 RYSEGSLVKKL--EELGIGRPSTYASTLKVLQDRNYV 868
RY ++K+ E G+G +T A +++L R ++
Sbjct: 525 RYVTDPEIRKILKETDGLGTEATRAGIIELLFKRGFI 561
>UNIPROTKB|Q9KQF5 [details] [associations]
symbol:topB "DNA topoisomerase 3" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0006265 "DNA topological
change" evidence=ISS] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR005738 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003916 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03169
ProtClustDB:PRK07726 TIGRFAMs:TIGR01056 PIR:E82126
RefSeq:NP_231677.1 ProteinModelPortal:Q9KQF5 SMR:Q9KQF5
DNASU:2613424 GeneID:2613424 KEGG:vch:VC2043 PATRIC:20083118
OMA:AANGDCV Uniprot:Q9KQF5
Length = 647
Score = 263 (97.6 bits), Expect = 6.2e-19, P = 6.2e-19
Identities = 145/545 (26%), Positives = 232/545 (42%)
Query: 401 WEV-P-SAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVA 458
W++ P ++ L ++ L A +I A DPDREG+ + +++ + + E TV
Sbjct: 74 WQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKSKKE--TVQ 131
Query: 459 RVVFHEITEASIKVALQAAR---EIDANLVQAYLARRALDYLIGFNIS---PLLWRKL-- 510
R++ ++ +++K ALQ R E V A LAR D+L G N+S LL +K
Sbjct: 132 RLLISDLNLSAVKRALQGLRSNREFIPLSVSA-LARSRADWLYGMNMSRAYTLLGKKAGY 190
Query: 511 PGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQ 570
G S GRVQ+ L L+ R+ EI+ F P +Y+T++A++ + + + F A +
Sbjct: 191 QGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQ--NGTEYFDIRARWKPSE 248
Query: 571 SKRLNQLSIGSHTEAK---DIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANK 627
+ Q G T K ++ +I + V ++ + + P PY S LQ DAA +
Sbjct: 249 ACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKR 308
Query: 628 LNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDE----AAKEIRSLIFERY 683
NFSA + L Q LYE +L ITY R+D ++ E A + ++
Sbjct: 309 YNFSAQQVLDLCQSLYEKHKL--------ITYPRSDCRYLPKEHLAQAPDVVAAIANNAQ 360
Query: 684 GSHHAPEEGPRKYFKKVKNAQ--EAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRT 741
A + K N +AH AI PT + LSG E +K+Y LI +R
Sbjct: 361 EMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSG--HE--MKVYQLI-ARQ 415
Query: 742 MACQMQPATV-GQIQVDIGNADESIVFRS----SCSRVEFLGFQAAYED-VD------AG 789
Q PA + + ++ A + + S G Q E+ VD G
Sbjct: 416 YLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDEQEECVDKVPPLPVG 475
Query: 790 AI-RYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEEL- 847
+ + +E E R +T P + E L Q T ++ L K L E
Sbjct: 476 IVLQCREGEIKQR----------QTEPPRHFTEATLLQAMTGIARFVADKELKKILRETD 525
Query: 848 GIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETE 907
G+G +T A L L R + ++++ GR + L SE T TA E +
Sbjct: 526 GLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALP---SEATYPDMTAHWEHQ 582
Query: 908 LDNVS 912
L ++
Sbjct: 583 LQAIA 587
>TIGR_CMR|VC_2043 [details] [associations]
symbol:VC_2043 "DNA topoisomerase III" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005738 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006265 PROSITE:PS50880
SMART:SM00493 GO:GO:0003916 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 eggNOG:COG0550 KO:K03169 ProtClustDB:PRK07726
TIGRFAMs:TIGR01056 PIR:E82126 RefSeq:NP_231677.1
ProteinModelPortal:Q9KQF5 SMR:Q9KQF5 DNASU:2613424 GeneID:2613424
KEGG:vch:VC2043 PATRIC:20083118 OMA:AANGDCV Uniprot:Q9KQF5
Length = 647
Score = 263 (97.6 bits), Expect = 6.2e-19, P = 6.2e-19
Identities = 145/545 (26%), Positives = 232/545 (42%)
Query: 401 WEV-P-SAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVA 458
W++ P ++ L ++ L A +I A DPDREG+ + +++ + + E TV
Sbjct: 74 WQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKSKKE--TVQ 131
Query: 459 RVVFHEITEASIKVALQAAR---EIDANLVQAYLARRALDYLIGFNIS---PLLWRKL-- 510
R++ ++ +++K ALQ R E V A LAR D+L G N+S LL +K
Sbjct: 132 RLLISDLNLSAVKRALQGLRSNREFIPLSVSA-LARSRADWLYGMNMSRAYTLLGKKAGY 190
Query: 511 PGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQ 570
G S GRVQ+ L L+ R+ EI+ F P +Y+T++A++ + + + F A +
Sbjct: 191 QGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQ--NGTEYFDIRARWKPSE 248
Query: 571 SKRLNQLSIGSHTEAK---DIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANK 627
+ Q G T K ++ +I + V ++ + + P PY S LQ DAA +
Sbjct: 249 ACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKR 308
Query: 628 LNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDE----AAKEIRSLIFERY 683
NFSA + L Q LYE +L ITY R+D ++ E A + ++
Sbjct: 309 YNFSAQQVLDLCQSLYEKHKL--------ITYPRSDCRYLPKEHLAQAPDVVAAIANNAQ 360
Query: 684 GSHHAPEEGPRKYFKKVKNAQ--EAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRT 741
A + K N +AH AI PT + LSG E +K+Y LI +R
Sbjct: 361 EMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSG--HE--MKVYQLI-ARQ 415
Query: 742 MACQMQPATV-GQIQVDIGNADESIVFRS----SCSRVEFLGFQAAYED-VD------AG 789
Q PA + + ++ A + + S G Q E+ VD G
Sbjct: 416 YLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDEQEECVDKVPPLPVG 475
Query: 790 AI-RYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEEL- 847
+ + +E E R +T P + E L Q T ++ L K L E
Sbjct: 476 IVLQCREGEIKQR----------QTEPPRHFTEATLLQAMTGIARFVADKELKKILRETD 525
Query: 848 GIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETE 907
G+G +T A L L R + ++++ GR + L SE T TA E +
Sbjct: 526 GLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALP---SEATYPDMTAHWEHQ 582
Query: 908 LDNVS 912
L ++
Sbjct: 583 LQAIA 587
>UNIPROTKB|E2RIS5 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9615 "Canis lupus
familiaris" [GO:0016605 "PML body" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0016605 GO:GO:0008270 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 KO:K03165 CTD:7156 OMA:KPRKCSL
EMBL:AAEX03003715 RefSeq:XP_546656.2 Ensembl:ENSCAFT00000029019
GeneID:489537 KEGG:cfa:489537 NextBio:20862709 Uniprot:E2RIS5
Length = 989
Score = 174 (66.3 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 93/371 (25%), Positives = 155/371 (41%)
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+++ + L++ +D DREGE I + I+ + + A+ N+ V R F EIT +++
Sbjct: 131 KTLQRETQQCQALVIWTDCDREGENIGFEIIHVCR---AVKPNLQVLRARFSEITPRAVR 187
Query: 472 VALQAAREIDANLVQAYLARRALDYLIG--FN-ISPLLWRKL-PGCQ-----SAGRVQSA 522
VA + E D + A R+ LD IG F L +K+ P S G Q
Sbjct: 188 VACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQKIFPEVLAEQLISYGSCQFP 247
Query: 523 ALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSH 582
L + +R I F P+ + ++ D K+ + F KR ++L +H
Sbjct: 248 TLGFVVERFKAIQAFVPEIFHKIKVTHDHKDG-----------IVEFNWKR-HRLF--NH 293
Query: 583 TEAKDIEQK-INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQK 641
T + Q + V++ +S + P T L++ A+ KL +A TM++A+K
Sbjct: 294 TACLVLYQLCMEDPTATVVEVRSKSKSKWRPQALDTVELEKLASRKLRINAKETMRIAEK 353
Query: 642 LYEGVQLPDGTAAGLITYMRTD------GLHISDEAAKEIRSLIFERYGSHHAPEEGPRK 695
LY G I+Y RT+ L ++ ++ + + GP
Sbjct: 354 LY---------TQGYISYPRTETNIFPKDLDLTVLVEQQTPDPRWGAFAQSILERGGPTP 404
Query: 696 YFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQ 755
+ + +AH I PT + + L G DE +LY I +AC Q A +
Sbjct: 405 --RNGNKSDQAHPPIHPT---KYTSSLQG--DEQ--RLYEFIVRHFLACCSQDAQGQETT 455
Query: 756 VDIGNADESIV 766
V+I A E V
Sbjct: 456 VEIDIAQERFV 466
Score = 141 (54.7 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 44/186 (23%), Positives = 87/186 (46%)
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYV--TVKSRILYPEF 879
VE+ T PP +E L+ +E+ GIG +T+A ++ ++ R YV T R L P
Sbjct: 505 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTADKRFL-PGH 563
Query: 880 RGR-MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQS 938
G +V + S + E++ A++E +L + G + +L ++ A +
Sbjct: 564 LGMGLVEGYDSMGY-EMSKPDLRAELEADLKLICEGKKDKSVVLRQQVQKYKQVFIEAVA 622
Query: 939 LHIHQVEKMLEKTFGD--------SLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGC 990
++++ L + FG+ +++ S+P + CP C + ++ K + G G+++ C
Sbjct: 623 -KAKKLDEALSQYFGEGTEVAQQEAIYPSMPEPIKKCPQCNKD-MVLKTKKNG-GFYLSC 679
Query: 991 NQHPRC 996
P C
Sbjct: 680 TGFPEC 685
Score = 37 (18.1 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 959 SLPNKDRSCPVC 970
S P K R C +C
Sbjct: 964 STPKKPRKCSLC 975
>FB|FBgn0040268 [details] [associations]
symbol:Top3alpha "Topoisomerase 3alpha" species:7227
"Drosophila melanogaster" [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISS;NAS] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IDA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0000002 "mitochondrial genome maintenance" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0042246 "tissue regeneration" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] InterPro:IPR000380
InterPro:IPR001878 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR010666 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00343 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 EMBL:AE014134 GO:GO:0008270
GO:GO:0000002 GO:GO:0042246 GO:GO:0000724 GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003916 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 EMBL:AF255733 EMBL:BT015282 RefSeq:NP_523602.2
UniGene:Dm.2659 ProteinModelPortal:Q9NG98 SMR:Q9NG98 STRING:Q9NG98
PaxDb:Q9NG98 PRIDE:Q9NG98 EnsemblMetazoa:FBtr0081246 GeneID:35236
KEGG:dme:Dmel_CG10123 CTD:35236 FlyBase:FBgn0040268 eggNOG:COG0550
GeneTree:ENSGT00530000063430 InParanoid:Q9NG98 KO:K03165
OMA:LVIHERN OrthoDB:EOG43TX9H PhylomeDB:Q9NG98 GenomeRNAi:35236
NextBio:792526 Bgee:Q9NG98 GermOnline:CG10123 Gene3D:1.10.290.10
Uniprot:Q9NG98
Length = 1250
Score = 200 (75.5 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
Identities = 115/461 (24%), Positives = 188/461 (40%)
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
++++ + G + LI+ +D DREGE I + I+++ + A+ NI+V R F EIT +++
Sbjct: 123 RTLEREVRGCQGLIIWTDCDREGENIGYEIIDVCR---AIKPNISVYRATFSEITTVAVR 179
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPL----LWRKLPG-----CQSAGRVQSA 522
ALQ + D A R LD G I+ L R P S G Q
Sbjct: 180 RALQQLGQPDKRQSDAVDVRTELDLRTGAAITRFQTMRLQRLFPEKIADKLISYGSCQIP 239
Query: 523 ALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLD--TFSFP-AHLTHFQSKRLNQLSI 579
L + +R EI+ F + +W ++ + H++D T F A F + +
Sbjct: 240 TLGFVAERYKEIEAFVSEPFWKIKVL------HTIDDLTVEFNWARNRLFDKEACENYLL 293
Query: 580 GSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLA 639
E D + S + K+ R PTP T +++ + KL SA TM +A
Sbjct: 294 LCLAEP-DPRALVESVTVKP-KHKWR------PTPLDTVEMEKLGSRKLKLSAKETMTIA 345
Query: 640 QKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKE--IRSLIFER-YGS--HHAPEEGPR 694
+KLY G I+Y RT+ S E A + R +G+ E GP
Sbjct: 346 EKLY---------TKGFISYPRTETNQFSKEFALAPLVEMQTGHRDWGAFAQRVIEWGPN 396
Query: 695 KYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQI 754
+ + +AH I PT +L L G +E ++Y L+ +AC + A +
Sbjct: 397 P--RNGNKSDQAHPPIHPT---KLAENLQG--NE--ARVYELVVRHFLACVSKDAVGSET 447
Query: 755 QVDIGNADESIVFRSSCSRVE-FLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKT 813
V I A E +L Y+ A I + EN + ++ T
Sbjct: 448 LVHIDIAGEKFTANGLVIHERNYLDVYV-YDKWSAKQIHHYENGQRFEPTEVSLHEGATT 506
Query: 814 GDPLYLGEVEL----KQHHTQPPARYSEG-SLVKKLEELGI 849
PL L E +L ++H A ++E + +K+ +G+
Sbjct: 507 APPL-LTEADLIALMEKHGIGTDATHAEHINTIKERGYIGV 546
Score = 116 (45.9 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
Identities = 44/191 (23%), Positives = 79/191 (41%)
Query: 821 EVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSR-ILYPEF 879
EV L + T P +E L+ +E+ GIG +T+A + +++R Y+ V + L P
Sbjct: 497 EVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGVLDKGFLVPGV 556
Query: 880 RGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFS-SYCTCAQS 938
G + + A+ E +L + G + K +L + +++ +Y
Sbjct: 557 IGMGLYEGYDAMELALAKPQLRAEFELDLKLICQGQKDPKVVLTEQIAKYKQAYQQITDK 616
Query: 939 LHIHQVE---KMLEKTFGDSLF-----ASLPNKD--RS---CPVCGEGTLIFKVSRFGAG 985
+ + ++ E +S S P+ +S CP C E L K + G
Sbjct: 617 ITAMDAKISARINETPAANSAVQEGADGSAPSHGIIQSIFQCPKCNEAPLALKPKKNQQG 676
Query: 986 YFIGCNQHPRC 996
++IGCN P C
Sbjct: 677 WYIGCNNFPDC 687
Score = 61 (26.5 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 21/63 (33%), Positives = 27/63 (42%)
Query: 964 DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPK 1023
D CP CG+G + K R Y+ G P Y KT D+ T N N+D K
Sbjct: 704 DECCPTCGDGYRMLKF-RLSTPYYRGVFGTPSGWY--KTCLPCDNLFRTTF-NINLDSVK 759
Query: 1024 LIG 1026
+G
Sbjct: 760 KVG 762
>UNIPROTKB|P14294 [details] [associations]
symbol:topB species:83333 "Escherichia coli K-12"
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA;IDA]
[GO:0006310 "DNA recombination" evidence=IMP] [GO:0051304
"chromosome separation" evidence=IMP] [GO:0006265 "DNA topological
change" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR005738 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006310 GO:GO:0006265 GO:GO:0051304
PROSITE:PS50880 SMART:SM00493 EMBL:J05076 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 OMA:GNKERDE
KO:K03169 ProtClustDB:PRK07726 TIGRFAMs:TIGR01056 PIR:JV0049
RefSeq:NP_416277.1 RefSeq:YP_490024.1 PDB:1D6M PDB:1I7D PDB:2O19
PDB:2O54 PDB:2O59 PDB:2O5C PDB:2O5E PDBsum:1D6M PDBsum:1I7D
PDBsum:2O19 PDBsum:2O54 PDBsum:2O59 PDBsum:2O5C PDBsum:2O5E
ProteinModelPortal:P14294 SMR:P14294 DIP:DIP-11012N IntAct:P14294
MINT:MINT-1224249 PRIDE:P14294 EnsemblBacteria:EBESCT00000000765
EnsemblBacteria:EBESCT00000016482 GeneID:12930143 GeneID:946141
KEGG:ecj:Y75_p1738 KEGG:eco:b1763 PATRIC:32118837 EchoBASE:EB1007
EcoGene:EG11014 HOGENOM:HOG000086848 BioCyc:EcoCyc:EG11014-MONOMER
BioCyc:ECOL316407:JW1752-MONOMER BioCyc:MetaCyc:EG11014-MONOMER
EvolutionaryTrace:P14294 Genevestigator:P14294 Uniprot:P14294
Length = 653
Score = 254 (94.5 bits), Expect = 6.0e-18, P = 6.0e-18
Identities = 138/540 (25%), Positives = 230/540 (42%)
Query: 401 WEV-PSAAWT-HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVA 458
W++ P + T L IK L A ++ A DPDREG+ + +++ LQ A + V
Sbjct: 73 WQLQPRPSVTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQL--APEKRQQVQ 130
Query: 459 RVVFHEITEASIKVALQAAREID--ANLVQAYLARRALDYLIGFNIS---PLLWRKL--P 511
R + +++ +++ A+ R L + LAR D+L G N++ +L R
Sbjct: 131 RCLINDLNPQAVERAIDRLRSNSEFVPLCVSALARARADWLYGINMTRAYTILGRNAGYQ 190
Query: 512 GCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTH-FQ 570
G S GRVQ+ L L+ R+ EI+ F ++++ V+A + P+ +Q
Sbjct: 191 GVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIWQPSEACEPYQ 250
Query: 571 SK--RLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKL 628
+ RL + H + Q ++ N KR P P+ S LQ +AA +
Sbjct: 251 DEEGRLLHRPLAEHVVNRISGQPAIVTSY----NDKRES-ESAPLPFSLSALQIEAAKRF 305
Query: 629 NFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHA 688
SA + + QKLYE +L ITY R+D ++ +E R + S HA
Sbjct: 306 GLSAQNVLDICQKLYETHKL--------ITYPRSDCRYLPEEHFAG-RHAVMNAI-SVHA 355
Query: 689 PEEGPRKYFKK-VKNA------QEAHEAIRPTDIRRLPAMLSGL-LDEDCLKLYSLIWSR 740
P+ P+ ++N +AH AI PT A S + L E+ K+Y+LI +R
Sbjct: 356 PDLLPQPVVDPDIRNRCWDDKKVDAHHAIIPT------ARSSAINLTENEAKVYNLI-AR 408
Query: 741 TMACQMQPATVGQ---IQVDI--GNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKE 795
Q P V + I++DI G F + LG + E+ D +
Sbjct: 409 QYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEENDGTPLPVVA 468
Query: 796 NEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEEL--GIGRPS 853
+ E ++ +T P + + L T AR+ + +KK+ G+G +
Sbjct: 469 KGDELLCEKGEVVER-QTQPPRHFTDATLLSAMTGI-ARFVQDKDLKKILRATDGLGTEA 526
Query: 854 TYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEV-TDYSFTADMETELDNVS 912
T A +++L R ++T K R ++ G+ L H E+ T TA E+ L +S
Sbjct: 527 TRAGIIELLFKRGFLTKKGRYIHSTDAGKA----LFHSLPEMATRPDMTAHWESVLTQIS 582
>TIGR_CMR|CPS_4792 [details] [associations]
symbol:CPS_4792 "DNA topoisomerase III" species:167879
"Colwellia psychrerythraea 34H" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005738 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 OMA:GNKERDE
KO:K03169 ProtClustDB:PRK07726 TIGRFAMs:TIGR01056
HOGENOM:HOG000086848 RefSeq:YP_271431.1 ProteinModelPortal:Q47UU1
SMR:Q47UU1 STRING:Q47UU1 GeneID:3522462 KEGG:cps:CPS_4792
PATRIC:21472403 BioCyc:CPSY167879:GI48-4793-MONOMER Uniprot:Q47UU1
Length = 649
Score = 252 (93.8 bits), Expect = 9.8e-18, P = 9.8e-18
Identities = 137/585 (23%), Positives = 254/585 (43%)
Query: 401 WEVPSAAWTH--LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVA 458
W++ A T L ++ + A+ +I A DPDREG+ + +++ + NI
Sbjct: 73 WQLKPIARTRSQLTVLRKLVKQADEIIHAGDPDREGQLLVDEVIDYFKLSKTKKANIK-- 130
Query: 459 RVVFHEITEASIKVALQAAR-EID-ANLVQAYLARRALDYLIGFNISPL--LWRKLPGCQ 514
R++ ++ ++K AL + + D L + LAR D+L G N++ L + G
Sbjct: 131 RLLISDLNLPAVKRALTSLKPNSDFMPLSISALARSRADWLYGINLTRAYTLQGQKTGYN 190
Query: 515 SA---GRVQSAALSLICDREMEIDEFKPQEYWTVEA--VLDKKESHSLDTFSFPAHLTHF 569
S GRVQ+ L L+ RE EI EF + ++ V+A L K++ + P+
Sbjct: 191 SVLSVGRVQTPLLGLVVRREQEISEFVSKPFFQVQAHIALSSKDAVAFTAKWQPSENCQP 250
Query: 570 QSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLN 629
++ + + E ++ ++I + + + P P+ S LQ AA + +
Sbjct: 251 YCDEEGRVLVKALAE--NVVKRIANQPATISNIDSNEKQQAAPLPFNLSQLQISAAKQFS 308
Query: 630 FSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSH--- 686
+A + + Q LYE +L ITY R+D ++ E K+ ++ S
Sbjct: 309 MNAKLVLDVCQALYERHKL--------ITYPRSDCRYLPKEQLKQASGIVNTLANSSLPC 360
Query: 687 HAPEEGPRKYF-KKVKNAQE--AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMA 743
+ P +G F K N ++ AH AI PT+ + P ++ L+ +Y LI R
Sbjct: 361 NKPAQGANTSFVSKAWNDKKITAHHAIIPTE--KSPENIN--LNTFEKNVYLLI-VRQYL 415
Query: 744 CQMQPATV-GQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRH 802
Q PA + Q +V++ A + F S + LG+Q + + + K ++
Sbjct: 416 VQFYPAYIFQQTKVELLIAGGN--FMSQAKTEKQLGWQVLFPKSNKTNNQSKLEHGQEQE 473
Query: 803 EAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVL 862
+ L L G L+ + EL + HT PP +++ +L+ + GI R A+ KVL
Sbjct: 474 QT---LPPLTKGQLLHCQQGELIEKHTSPPQSFTDATLLGAMT--GISRYVNDAAIKKVL 528
Query: 863 QDRNYV---TVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSA--GLT- 916
++ + + ++ I+ F+ FL +T + T L ++ +T
Sbjct: 529 KETDGLGTDATRAGIIDLLFK----RGFLQRQGKAITATKVGVALITALPTMATLPDMTA 584
Query: 917 EWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLP 961
+W+ L + ++Y + Q L + V +M++ S F+ LP
Sbjct: 585 QWEATLTAISEKNANYLSFMQPLTVI-VNEMVQGASQQS-FSGLP 627
>UNIPROTKB|F1P1F3 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9031 "Gallus
gallus" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0016605 GO:GO:0008270 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
Gene3D:1.10.290.10 OMA:KPRKCSL EMBL:AADN02023704 IPI:IPI00571604
Ensembl:ENSGALT00000008050 Uniprot:F1P1F3
Length = 1020
Score = 168 (64.2 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 90/371 (24%), Positives = 158/371 (42%)
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
++++ + + L++ +D DREGE I + I+ + + A+ N+ V R F EIT +++
Sbjct: 133 RTLEREVQQCQALVIWTDCDREGENIGFEIIHVCK---AVKPNLQVFRARFSEITLHAVR 189
Query: 472 VALQAAREIDANLVQAYLARRALDYLIG--FN-ISPLLWRKL-PGCQ-----SAGRVQSA 522
A + + D A R+ LD IG F L +K+ P S G Q
Sbjct: 190 RACENLTQPDQKTSDAVEVRQELDLRIGAAFTRFQTLRLQKIFPDILADQLISYGSCQFP 249
Query: 523 ALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSH 582
L + +R I F P+ ++ ++ D ++ + + F KR N+L +H
Sbjct: 250 TLGFVVERFKAIQAFVPEAFYKIKVTHDHEDGNVV-----------FNWKR-NRLF--NH 295
Query: 583 TEAKDIEQK-INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQK 641
T + + V++ + + P P T L++ A+ KL +A TM++A+K
Sbjct: 296 TACLVLYHMCMEDPVATVVEVGSKPKSKWRPLPLDTVELEKLASRKLKINAKETMRIAEK 355
Query: 642 LYEGVQLPDGTAAGLITYMRTDG------LHISDEAAKEIRSLIFERYGSHHAPEEGPRK 695
LY G I+Y RT+ L++S + + + + + GP
Sbjct: 356 LY---------TQGFISYPRTETNIFPKELNLSALVQHQTQDPNWGAFAQRILDQGGPTP 406
Query: 696 YFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQ 755
+ + +AH I PT + A L G +E +LY I +AC Q A +
Sbjct: 407 --RNGTKSDQAHPPIHPT---KYTANLQG--NEQ--RLYEFIVRHFLACCSQDAKGQETT 457
Query: 756 VDIGNADESIV 766
V+I A+E V
Sbjct: 458 VEIDIANERFV 468
Score = 141 (54.7 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 44/186 (23%), Positives = 88/186 (47%)
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYV--TVKSRILYPEF 879
VE+ T PP +E L+ +E+ GIG +T+A ++ ++ R YV T R L P
Sbjct: 507 VEMVDGETSPPLLLTEADLIALMEKHGIGTDATHAEHIETIKTRMYVGLTADQRFL-PGH 565
Query: 880 RGR-MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQS 938
G +V + S + E++ A++E +L + G + +L ++ A +
Sbjct: 566 LGMGLVEGYDSMGY-EMSKPDLRAELEADLKLICEGKKDKSIVLHQQVQKYKQVFIEAVA 624
Query: 939 LHIHQVEKMLEKTFGDS--------LFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGC 990
+++++ L + FG++ ++ ++P R CP C ++ K + G G+++ C
Sbjct: 625 -RANKLDQALAQYFGEATEIVEQEEVYPAMPVSIRKCPQCNND-MVLKTKKNG-GFYLSC 681
Query: 991 NQHPRC 996
+P C
Sbjct: 682 TGYPAC 687
Score = 37 (18.1 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 5/22 (22%), Positives = 15/22 (68%)
Query: 531 EMEIDEFKPQEYWTVEAVLDKK 552
+ EI+++ P+ Y ++ L+++
Sbjct: 117 DAEIEKYCPENYVDIKRTLERE 138
>UNIPROTKB|F1MGY1 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9913 "Bos taurus"
[GO:0016605 "PML body" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] InterPro:IPR000380
InterPro:IPR001878 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR010666 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00343 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 GO:GO:0016605
GO:GO:0008270 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
OMA:KPRKCSL EMBL:DAAA02048987 EMBL:DAAA02048988 IPI:IPI00827029
UniGene:Bt.103042 Ensembl:ENSBTAT00000022721 Uniprot:F1MGY1
Length = 1002
Score = 168 (64.2 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 94/371 (25%), Positives = 158/371 (42%)
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+++ + L++ +D DREGE I + ++ + + A+ ++ V R F EIT +++
Sbjct: 131 KTLEREAQQCQALVIWTDCDREGENIGFEVIHVCK---AVKPSLQVLRARFSEITTRAVR 187
Query: 472 VALQAAREIDANLVQAYLARRALDYLIG--FN-ISPLLWRKL-PGCQ-----SAGRVQSA 522
A + E D + A R+ LD IG F L +K+ P S G Q
Sbjct: 188 TACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQKIFPEVLAEQLISYGSCQFP 247
Query: 523 ALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSH 582
L + +R I F P+ + + D ++ + FS+ H RL +H
Sbjct: 248 TLGFVVERFKAIQAFVPEVFHKIRVTHDHRDG--VVEFSWKRH-------RLF-----NH 293
Query: 583 TEAKDIEQK-INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQK 641
T + Q + V++ ++ + P T L++ A+ KL +A TM++A+K
Sbjct: 294 TACLVLYQMCMEDPRAMVVEVRSKAKSKWRPQALDTVELEKLASRKLRINAKETMRIAEK 353
Query: 642 LYEGVQLPDGTAAGLITYMRTD-GLHISD-EAAKEIRSLIFE-RYGS--HHAPEEG-PRK 695
LY G I+Y RT+ + D + A + + R+G+ + E G P
Sbjct: 354 LY---------TQGYISYPRTETNIFPKDLDLAALVEQQTPDPRWGAFARNILERGGPTP 404
Query: 696 YFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQ 755
+ + +AH I PT + L G DE +LY LI +AC Q A +
Sbjct: 405 --RNGNKSDQAHPPIHPT---KYTDSLQG--DEQ--RLYELIVRHFLACCSQDAQGQETT 455
Query: 756 VDIGNADESIV 766
V+I A E V
Sbjct: 456 VEIDIAQERFV 466
Score = 139 (54.0 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 56/230 (24%), Positives = 101/230 (43%)
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYV--TVKSRILYPEF 879
VE+ T PP +E L+ +E+ GIG +T+A ++ ++ R YV T R L P
Sbjct: 505 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFL-PGH 563
Query: 880 RGR-MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQS 938
G +V + S + E++ A++E +L + G + +L ++ A +
Sbjct: 564 LGMGLVEGYDSMGY-EMSKPDLRAELEADLKLICEGKKDKLVVLHQQVQKYKQVFIEAVA 622
Query: 939 LHIHQVEKMLEKTFG--------DSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGC 990
++++ L + FG D+L A +P R CP C ++ K + G G+++GC
Sbjct: 623 -KARKLDEALSQYFGAATEVAPQDALPA-VPEPIRKCPQCSRD-MVLKTRKSG-GFYLGC 678
Query: 991 NQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSG 1040
P C + + D L+ + +V + HP + K K G
Sbjct: 679 TGFPECR--SAVWFPDS----VLEASRDVSVCPVCQPHPVYRLKFKFKRG 722
Score = 37 (18.1 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 465 ITEASIKVALQAAREI 480
+T A+++VAL+ R+I
Sbjct: 21 LTRAAMEVALRGVRKI 36
>UNIPROTKB|B4DK80 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] InterPro:IPR000380 InterPro:IPR001878
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR010666
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005694 GO:GO:0008270 GO:GO:0006265 EMBL:AC127537
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
UniGene:Hs.592115 HGNC:HGNC:11992 HOVERGEN:HBG056668 EMBL:AK296437
IPI:IPI01011812 SMR:B4DK80 STRING:B4DK80 Ensembl:ENST00000542570
UCSC:uc010vxs.1 Uniprot:B4DK80
Length = 906
Score = 162 (62.1 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 92/372 (24%), Positives = 152/372 (40%)
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+++ + L++ +D DREGE I + I+ + + A+ N+ V R F EIT +++
Sbjct: 36 KTLERETRQCQALVIWTDCDREGENIGFEIIHVCK---AVKPNLQVLRARFSEITPHAVR 92
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPL----LWRKLPGCQ-----SAGRVQSA 522
A + E D + A R+ LD IG + L R P S G Q
Sbjct: 93 TACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFP 152
Query: 523 ALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAH--LTHFQSKRLNQLSIG 580
L + +R I F P+ + ++ D K+ + F++ H H L QL +
Sbjct: 153 TLGFVVERFKAIQAFVPEIFHRIKVTHDHKDG--IVEFNWKRHRLFNHTACLVLYQLCV- 209
Query: 581 SHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQ 640
E + A +++ +S R P T L++ A+ KL +A TM++A+
Sbjct: 210 --------EDPM--ATVVEVRSKPKSKWR--PQALDTVELEKLASRKLRINAKETMRIAE 257
Query: 641 KLYEGVQLPDGTAAGLITYMRTD------GLHISDEAAKEIRSLIFERYGSHHAPEEGPR 694
KLY G I+Y RT+ L+++ ++ + + GP
Sbjct: 258 KLY---------TQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPT 308
Query: 695 KYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQI 754
+ + +AH I PT + L G DE +LY I +AC Q A +
Sbjct: 309 P--RNGNKSDQAHPPIHPT---KYTNNLQG--DEQ--RLYEFIVRHFLACCSQDAQGQET 359
Query: 755 QVDIGNADESIV 766
V+I A E V
Sbjct: 360 TVEIDIAQERFV 371
Score = 135 (52.6 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 48/206 (23%), Positives = 92/206 (44%)
Query: 802 HEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKV 861
H + IL + G VE+ T PP +E L+ +E+ GIG +T+A ++
Sbjct: 390 HWSDKILPVYEQGSHFQPSTVEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIET 449
Query: 862 LQDRNYV--TVKSRILYPEFRGR-MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEW 918
++ R YV T R L P G +V + S + E++ A++E +L + G +
Sbjct: 450 IKARMYVGLTPDKRFL-PGHLGMGLVEGYDSMGY-EMSKPDLRAELEADLKLICDGKKDK 507
Query: 919 KGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFG--------DSLFASLPNKDRSCPVC 970
+L ++ A + ++++ L + FG + ++ ++P R CP C
Sbjct: 508 FVVLRQQVQKYKQVFIEAVA-KAKKLDEALAQYFGNGTELAQQEDIYPAMPEPIRKCPQC 566
Query: 971 GEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ ++ K + G G+++ C P C
Sbjct: 567 NKD-MVLKTKKNG-GFYLSCMGFPEC 590
>UNIPROTKB|Q13472 [details] [associations]
symbol:TOP3A "DNA topoisomerase 3-alpha" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0016605 "PML body"
evidence=IDA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003677 "DNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] [GO:0007126 "meiosis" evidence=TAS]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0007126 GO:GO:0005694 GO:GO:0046872 GO:GO:0016605
GO:GO:0008270 Reactome:REACT_111183 EMBL:CH471196 GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165 EMBL:U43431 EMBL:HQ205026
EMBL:HQ205027 EMBL:HQ205028 EMBL:HQ205029 EMBL:HQ205030
EMBL:HQ205031 EMBL:HQ205032 EMBL:HQ205033 EMBL:HQ205034
EMBL:HQ205035 EMBL:HQ205036 EMBL:HQ205037 EMBL:HQ205038
EMBL:HQ205039 EMBL:HQ205040 EMBL:HQ205041 EMBL:HQ205042
EMBL:HQ205043 EMBL:HQ205044 EMBL:HQ205045 EMBL:HQ205046
EMBL:HQ205047 EMBL:HQ205048 EMBL:HQ205049 EMBL:HQ205050
EMBL:HQ205051 EMBL:HQ205052 EMBL:HQ205053 EMBL:HQ205054
EMBL:HQ205055 EMBL:HQ205056 EMBL:HQ205057 EMBL:HQ205058
EMBL:HQ205059 EMBL:HQ205060 EMBL:HQ205061 EMBL:HQ205062
EMBL:HQ205063 EMBL:HQ205064 EMBL:HQ205065 EMBL:AK292926
EMBL:BC051748 IPI:IPI00013378 IPI:IPI00221295 RefSeq:NP_004609.1
UniGene:Hs.592115 ProteinModelPortal:Q13472 SMR:Q13472
DIP:DIP-33323N IntAct:Q13472 MINT:MINT-6610291 STRING:Q13472
PhosphoSite:Q13472 DMDM:2501242 PaxDb:Q13472 PRIDE:Q13472
Ensembl:ENST00000321105 Ensembl:ENST00000580095 GeneID:7156
KEGG:hsa:7156 UCSC:uc002gsx.1 CTD:7156 GeneCards:GC17M018175
HGNC:HGNC:11992 HPA:CAB002449 MIM:601243 neXtProt:NX_Q13472
PharmGKB:PA36673 HOGENOM:HOG000184377 HOVERGEN:HBG056668
InParanoid:Q13472 OMA:KPRKCSL OrthoDB:EOG4K6G3F PhylomeDB:Q13472
GenomeRNAi:7156 NextBio:28002 ArrayExpress:Q13472 Bgee:Q13472
CleanEx:HS_TOP3A Genevestigator:Q13472 GermOnline:ENSG00000177302
Uniprot:Q13472
Length = 1001
Score = 162 (62.1 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 92/372 (24%), Positives = 152/372 (40%)
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+++ + L++ +D DREGE I + I+ + + A+ N+ V R F EIT +++
Sbjct: 131 KTLERETRQCQALVIWTDCDREGENIGFEIIHVCK---AVKPNLQVLRARFSEITPHAVR 187
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPL----LWRKLPGCQ-----SAGRVQSA 522
A + E D + A R+ LD IG + L R P S G Q
Sbjct: 188 TACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFP 247
Query: 523 ALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAH--LTHFQSKRLNQLSIG 580
L + +R I F P+ + ++ D K+ + F++ H H L QL +
Sbjct: 248 TLGFVVERFKAIQAFVPEIFHRIKVTHDHKDG--IVEFNWKRHRLFNHTACLVLYQLCV- 304
Query: 581 SHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQ 640
E + A +++ +S R P T L++ A+ KL +A TM++A+
Sbjct: 305 --------EDPM--ATVVEVRSKPKSKWR--PQALDTVELEKLASRKLRINAKETMRIAE 352
Query: 641 KLYEGVQLPDGTAAGLITYMRTD------GLHISDEAAKEIRSLIFERYGSHHAPEEGPR 694
KLY G I+Y RT+ L+++ ++ + + GP
Sbjct: 353 KLY---------TQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPT 403
Query: 695 KYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQI 754
+ + +AH I PT + L G DE +LY I +AC Q A +
Sbjct: 404 P--RNGNKSDQAHPPIHPT---KYTNNLQG--DEQ--RLYEFIVRHFLACCSQDAQGQET 454
Query: 755 QVDIGNADESIV 766
V+I A E V
Sbjct: 455 TVEIDIAQERFV 466
Score = 135 (52.6 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 48/206 (23%), Positives = 92/206 (44%)
Query: 802 HEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKV 861
H + IL + G VE+ T PP +E L+ +E+ GIG +T+A ++
Sbjct: 485 HWSDKILPVYEQGSHFQPSTVEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIET 544
Query: 862 LQDRNYV--TVKSRILYPEFRGR-MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEW 918
++ R YV T R L P G +V + S + E++ A++E +L + G +
Sbjct: 545 IKARMYVGLTPDKRFL-PGHLGMGLVEGYDSMGY-EMSKPDLRAELEADLKLICDGKKDK 602
Query: 919 KGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFG--------DSLFASLPNKDRSCPVC 970
+L ++ A + ++++ L + FG + ++ ++P R CP C
Sbjct: 603 FVVLRQQVQKYKQVFIEAVA-KAKKLDEALAQYFGNGTELAQQEDIYPAMPEPIRKCPQC 661
Query: 971 GEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ ++ K + G G+++ C P C
Sbjct: 662 NKD-MVLKTKKNG-GFYLSCMGFPEC 685
>RGD|1309320 [details] [associations]
symbol:Top3a "topoisomerase (DNA) III alpha" species:10116
"Rattus norvegicus" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA;ISO] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA;ISO] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016605 "PML body"
evidence=ISO] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 PRINTS:PR00417 SMART:SM00436
SMART:SM00437 Pfam:PF01751 RGD:1309320 InterPro:IPR006171
GO:GO:0005694 GO:GO:0008270 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 IPI:IPI00951502
Ensembl:ENSRNOT00000068351 UCSC:RGD:1309320 ArrayExpress:D4A6J4
Uniprot:D4A6J4
Length = 949
Score = 162 (62.1 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 77/313 (24%), Positives = 132/313 (42%)
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+++ + L++ +D DREGE I + I+ + + A+ N+ V R F EIT +++
Sbjct: 131 KTLERETQHCQALVIWTDCDREGENIGFEIIHVCK---AVKPNLQVLRARFSEITHHAVR 187
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPL----LWRKLPGCQ-----SAGRVQSA 522
A + E D + A R+ LD IG + L R P S G Q
Sbjct: 188 AACEHLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFP 247
Query: 523 ALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSH 582
L + +R I F P+ + ++ D K+ F KR + +H
Sbjct: 248 TLGFVVERFKAIQAFVPEVFHRIKVTHDHKDG-----------TVEFNWKRYR---LFNH 293
Query: 583 TEAKDIEQK-INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQK 641
T + Q + V++ + + P T L++ A+ KL +A TM++A+K
Sbjct: 294 TACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEK 353
Query: 642 LY-EGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKV 700
LY +G LP +T + D + S+ + IF + ++ + E P K+ K
Sbjct: 354 LYTQGGSLPS------LTSIPGDPMLTSERQTDGTQMYIFTKQIANES-ERPPPKWDK-- 404
Query: 701 KNAQEAHEAIRPT 713
+ +AH I PT
Sbjct: 405 --SDQAHPPIHPT 415
Score = 133 (51.9 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 44/184 (23%), Positives = 85/184 (46%)
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-RILYPEFR 880
VE+ T PP +E L+ +E+ GIG +T+A ++ ++ R YV + S + P
Sbjct: 500 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHL 559
Query: 881 GR-MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVD----YWSRFSSYCTC 935
G +V + S + E++ + A++E +L + G + +L Y F
Sbjct: 560 GMGLVEGYDSMGY-EMSKPNLRAELEADLKLICEGKKDKFQVLRQQVQKYKQVFIEAVAK 618
Query: 936 AQSLHIHQVEKMLEKTF---GDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQ 992
A+ L + + E+T + ++ ++P R CP C + ++ K + G G+++ C
Sbjct: 619 AKKLDEALSQYLGERTEVAQQEEIYPAMPEPVRKCPQCNKD-MVLKTKKSG-GFYLSCTG 676
Query: 993 HPRC 996
P C
Sbjct: 677 FPEC 680
Score = 62 (26.9 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 33/130 (25%), Positives = 54/130 (41%)
Query: 637 KLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKY 696
K ++ E + G+ L T + D + S+ + IF + ++ + E P K+
Sbjct: 345 KETMRIAEKLYTQGGSLPSL-TSIPGDPMLTSERQTDGTQMYIFTKQIANES-ERPPPKW 402
Query: 697 FKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQV 756
K + +AH I PT + + L G D +LY I +AC Q A + V
Sbjct: 403 DK----SDQAHPPIHPT---KYTSSLQG----DDRRLYEFIVRHFLACCSQDAQGQETTV 451
Query: 757 DIGNADESIV 766
+I A E V
Sbjct: 452 EIDIAQERFV 461
Score = 43 (20.2 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESH 555
E EI+++ P+ + ++ L+++ H
Sbjct: 115 EAEIEKYCPENFIDIKKTLERETQH 139
>WB|WBGene00006596 [details] [associations]
symbol:top-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007126 "meiosis" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0007126 GO:GO:0005694 GO:GO:0008270
GO:GO:0007276 EMBL:AL132860 GO:GO:0006265 PROSITE:PS50880
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 Gene3D:1.10.290.10
HOGENOM:HOG000184377 EMBL:AF057032 PIR:T43031 RefSeq:NP_499558.1
UniGene:Cel.19512 ProteinModelPortal:O61660 SMR:O61660
STRING:O61660 PaxDb:O61660 EnsemblMetazoa:Y56A3A.27.1
EnsemblMetazoa:Y56A3A.27.2 GeneID:176631 KEGG:cel:CELE_Y56A3A.27
UCSC:Y56A3A.27.1 CTD:176631 WormBase:Y56A3A.27 InParanoid:O61660
OMA:IGLMDAN NextBio:893376 Uniprot:O61660
Length = 759
Score = 206 (77.6 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 108/421 (25%), Positives = 179/421 (42%)
Query: 424 LILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDAN 483
L++ +D DREGEAI IV++ + + + + R F EIT+A+I A + +D
Sbjct: 111 LVVWTDCDREGEAIGAEIVKVCRDSN---RRLDIFRARFSEITKAAITRAARNLIRLDEK 167
Query: 484 LVQAYLARRALDYLIGFNISPLL-------WRKLPGCQ------SAGRVQSAALSLICDR 530
V A R LD IG + L +R L G S G Q L + DR
Sbjct: 168 TVAAVDCRSELDLRIGSAFTRLQTLHLRNRFRDLLGQNDTSQVISYGSCQFPTLGFVTDR 227
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
I+ F + +W + V +ESH ++ F + + F ++ L H E K+ ++
Sbjct: 228 YKMIENFVSEPFWKL-IVEHTRESHKVE-FLWDRNRL-FDRDTVDIL----HDECKETKE 280
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
V K +K+ + P T L++ +KL SA TM++A+KLY
Sbjct: 281 A------HVEKVAKKPKSKWRPQALDTVELEKLGISKLRMSAKQTMQVAEKLY------- 327
Query: 651 GTAAGLITYMRTD------GLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQ 704
+ G I+Y RT+ GL+++ ++ +S I+ + ++ + G + + +
Sbjct: 328 --SKGFISYPRTETNKFPAGLNLTPLVQQQTQSNIWGDF-ANEVLQNGVNP--RNGRKSD 382
Query: 705 EAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES 764
EAH I P L G D K+Y L+ +AC Q A + V++ E
Sbjct: 383 EAHPPIHPLKFTE-KHQLQG----DDWKVYELVVRHFLACVSQDAQGEETMVNLTVGTEK 437
Query: 765 IVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAI-LNSLKTGDPLYLGEVE 823
F +S R+ +G+ Y G E +R F + + KT P +L E +
Sbjct: 438 --FHASGLRIRDMGYLKVYVYEKWGNRLLPTYTEGERFTDFELKIGDGKTQAPDFLTEAD 495
Query: 824 L 824
L
Sbjct: 496 L 496
Score = 84 (34.6 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 24/96 (25%), Positives = 48/96 (50%)
Query: 821 EVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-SRILYPEF 879
E+++ TQ P +E L+ +++ GIG +T+A ++ ++ R Y+ V+ L P F
Sbjct: 477 ELKIGDGKTQAPDFLTEADLISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSF 536
Query: 880 RG-RMVSAFLSHYFSEVTDYSFTADMETELDNVSAG 914
G +V + F+ ++ A++E L + G
Sbjct: 537 LGLALVDGYDDMGFA-MSKPDLRANLEIGLKEICDG 571
>TAIR|locus:2160841 [details] [associations]
symbol:TOP3A "topoisomerase 3alpha" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA;ISS]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS] [GO:0006268 "DNA unwinding involved in
replication" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IMP] [GO:0006281 "DNA repair" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0007067
"mitosis" evidence=IMP] [GO:0007126 "meiosis" evidence=IMP]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0006270 "DNA replication initiation" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] [GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 PROSITE:PS50158 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005694 GO:GO:0007067
GO:GO:0008270 GO:GO:0006281 GO:GO:0000712 EMBL:AB019227
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
KO:K03165 Gene3D:1.10.290.10 HOGENOM:HOG000184377 OMA:KPRKCSL
HSSP:P14294 EMBL:EU295446 IPI:IPI00517152 RefSeq:NP_201197.1
UniGene:At.28974 ProteinModelPortal:Q9LVP1 SMR:Q9LVP1 PaxDb:Q9LVP1
PRIDE:Q9LVP1 EnsemblPlants:AT5G63920.1 GeneID:836513
KEGG:ath:AT5G63920 TAIR:At5g63920 InParanoid:Q9LVP1
PhylomeDB:Q9LVP1 ProtClustDB:CLSN2686218 Genevestigator:Q9LVP1
Uniprot:Q9LVP1
Length = 926
Score = 187 (70.9 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 89/366 (24%), Positives = 162/366 (44%)
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+++ ++ L+L D DREGE IA+ +V++ + A+ N+ + R F + + I
Sbjct: 106 KTLEEEARKSDWLVLWLDCDREGENIAFEVVDVCR---AVKHNLFIRRAHFSALIDRDIH 162
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNIS---PLLWRKLPGCQSAGRVQSAALSL-I 527
A+Q R+ + +A AR+ +D IG + + +L R S G +S +S
Sbjct: 163 EAVQNLRDPNQLFAEAVDARQEIDLRIGASFTRFQTMLLRDRFAIDSTGEERSRVISYGP 222
Query: 528 CDREMEIDEFKPQEYWTVEAVLDKKESHSLD-TFSFPAHLTHFQSKRLNQLSIGSHTEAK 586
C + F + YW ++A + +E +++ + L F R + S
Sbjct: 223 C--QFPTLGFIVERYWEIQAH-EPEEFWTINCSHQSEEGLATFNWMRGHLFDYASAVILY 279
Query: 587 DIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
++ + +A + + R + P P T L++ A+ S+ +TMK+A++LY+
Sbjct: 280 EMCVEEPTATVMNVPHP-RERFKYPPYPLNTIELEKRASRYFRLSSEHTMKVAEELYQ-- 336
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFER-----YGSHHA----PEEGPRKYF 697
AG I+Y RT+ S ++R+++ E+ +GS+ PE G +
Sbjct: 337 -------AGFISYPRTETDSFSSRT--DLRAMVEEQTRHPAWGSYAQRLLEPEGGLWRNP 387
Query: 698 KKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVD 757
+ +AH I PT + S D L +Y L+ +AC QPA + V+
Sbjct: 388 ANGGHDDKAHPPIHPTKFSSGESNWS----RDHLNVYELVVRHYLACVSQPAVAAETTVE 443
Query: 758 IGNADE 763
I A E
Sbjct: 444 IDIAGE 449
Score = 105 (42.0 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 40/174 (22%), Positives = 72/174 (41%)
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILY-PEFRGRMVSAF 887
T+PP E L+ +++ GIG +T +K L DR Y T + + P G +
Sbjct: 498 TRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDRGYATKDANTRFSPTNLGEALVMG 557
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
E+ + A ME +++ VS G +L + + A+ +E M
Sbjct: 558 YDDMGYELWKPNLRALMEHDMNEVSVGRKTKAEVLETCLQQMKACFLDARVKKSKLLEAM 617
Query: 948 ---LEKTFG--DSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E++ +S + R C +C E + + +R G + +GC +P+C
Sbjct: 618 TIFFERSNNTDESESQTAGEVVRRCNLCNESDMALRKNRDG-NFMVGCMNYPQC 670
>MGI|MGI:1197527 [details] [associations]
symbol:Top3a "topoisomerase (DNA) III alpha" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016605 "PML body" evidence=ISO] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000380 InterPro:IPR001878
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR010666
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 MGI:MGI:1197527
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0005654
GO:GO:0046872 GO:GO:0016605 GO:GO:0008270 Reactome:REACT_120463
Reactome:REACT_27235 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165
Gene3D:1.10.290.10 CTD:7156 HOGENOM:HOG000184377 HOVERGEN:HBG056668
OMA:KPRKCSL EMBL:AB006074 IPI:IPI00115672 PIR:T13951
RefSeq:NP_033436.1 UniGene:Mm.477819 ProteinModelPortal:O70157
SMR:O70157 IntAct:O70157 STRING:O70157 PhosphoSite:O70157
PRIDE:O70157 Ensembl:ENSMUST00000002891 GeneID:21975 KEGG:mmu:21975
InParanoid:O70157 NextBio:301678 Bgee:O70157 CleanEx:MM_TOP3A
Genevestigator:O70157 GermOnline:ENSMUSG00000002814 Uniprot:O70157
Length = 1003
Score = 160 (61.4 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 92/371 (24%), Positives = 149/371 (40%)
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+++ + L++ +D DREGE I + I+ + + A+ N+ V R F EIT +++
Sbjct: 131 KTLERETHHCQALVIWTDCDREGENIGFEIIHVCK---AVKPNLRVLRARFSEITPHAVR 187
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPL----LWRKLPGCQ-----SAGRVQSA 522
A + E D + A R+ LD IG + L R P S G Q
Sbjct: 188 TACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFP 247
Query: 523 ALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSH 582
L + +R I F P+ + ++ D K+ F KR + +H
Sbjct: 248 TLGFVVERFKAIQAFVPEVFHKIKVTHDHKDG-----------TVEFNWKRYR---LFNH 293
Query: 583 TEAKDIEQK-INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQK 641
T + Q + V++ + + P T L++ A+ KL +A TM++A+K
Sbjct: 294 TACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEK 353
Query: 642 LYEGVQLPDGTAAGLITYMRTD-GLHISDE--AAKEIRSLIFERYGSHHAP--EEG-PRK 695
LY G I+Y RT+ + D A + + +G+ E G P
Sbjct: 354 LY---------TQGYISYPRTETNIFPKDLNLVALVEQQTVDPHWGAFAQTILERGGPTP 404
Query: 696 YFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQ 755
+ + +AH I PT SGL +D +LY I +AC Q A +
Sbjct: 405 --RNGSKSDQAHPPIHPTKYT------SGLQGDD-RRLYEFIVRHFLACCSQDAQGQETT 455
Query: 756 VDIGNADESIV 766
V+I A E V
Sbjct: 456 VEIDIAQERFV 466
Score = 132 (51.5 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 47/204 (23%), Positives = 90/204 (44%)
Query: 802 HEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKV 861
H + +L + G VE+ T PP +E L+ +E+ GIG +T+A ++
Sbjct: 485 HWSDKLLPVYEQGSHFQPSTVEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIET 544
Query: 862 LQDRNYVTVKS-RILYPEFRGR-MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWK 919
++ R YV + S + P G +V + S + E++ A++E +L + G +
Sbjct: 545 IKARMYVGLTSDKRFLPGHLGMGLVEGYDSMGY-EMSKPDLRAELEADLKLICEGKKDKF 603
Query: 920 GLLVD----YWSRFSSYCTCAQSLHIHQVEKMLEKTF---GDSLFASLPNKDRSCPVCGE 972
+L Y F A+ L + + E+T + ++ ++P R CP C +
Sbjct: 604 QVLRQQVQKYKQVFIEAVAKAKKLDEALSQYLGERTEMAQQEEIYPAMPEPVRKCPQCNK 663
Query: 973 GTLIFKVSRFGAGYFIGCNQHPRC 996
++ K + G G+++ C P C
Sbjct: 664 D-MVLKTKKSG-GFYLSCMGFPEC 685
>UNIPROTKB|E1BQG8 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9031 "Gallus
gallus" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059
GO:GO:0000793 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
OMA:QMFLNIT EMBL:AADN02034767 IPI:IPI00820597
Ensembl:ENSGALT00000040019 ArrayExpress:E1BQG8 Uniprot:E1BQG8
Length = 863
Score = 150 (57.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 60/246 (24%), Positives = 111/246 (45%)
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEML---QQQDALHENITVARVVFHEI 465
T +K ++V G ++++L D D+EGE I + +++ + + E + + R F I
Sbjct: 97 TMVKFLQVEGRGCDSIVLWLDCDKEGENICFEVLDAVLPVMNKSPSTERM-IYRAKFSSI 155
Query: 466 TEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQ--------SAG 517
T+ I A+ E + N + AR+ LD IG + + G S G
Sbjct: 156 TDTDICNAMNHLGEPNLNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFG 215
Query: 518 RVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQL 577
Q+ L +R +I FKP+ YW ++A ++ ++ SL T + + F + + Q+
Sbjct: 216 PCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNPEKESSL-TLDWD-RVRVFD-REIAQM 272
Query: 578 SIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMK 637
+ AK E K+ S SK+ V++ P T + + A+ L + M+
Sbjct: 273 FLNITKMAK--EAKVESV-------SKKEKVKQRPLALNTVEMLRVASAALGMGPQHAMQ 323
Query: 638 LAQKLY 643
+A++LY
Sbjct: 324 IAERLY 329
Score = 111 (44.1 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 33/117 (28%), Positives = 60/117 (51%)
Query: 808 LNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNY 867
L S + GD +GE++L + T PP +E L+ +E+ GIG ++ + + RNY
Sbjct: 467 LPSCEKGDLFPVGEIKLLEMQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNY 526
Query: 868 VTVKS-RILYPEFRGR-MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLL 922
VTV+S R L P G +V + +E+ + + +E +L+ ++ G + +L
Sbjct: 527 VTVESGRRLKPTNLGIVLVHGYYKIVDAELVLPTIRSAVEKQLNLIALGKANYHQVL 583
>UNIPROTKB|Q5ZK71 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9031 "Gallus
gallus" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 eggNOG:COG0550 GeneTree:ENSGT00530000063430
KO:K03165 CTD:8940 HOGENOM:HOG000184378 HOVERGEN:HBG059857
OrthoDB:EOG4ZPDTK EMBL:AADN02034767 EMBL:AB215105 EMBL:AJ720213
IPI:IPI00570659 RefSeq:NP_001006181.1 UniGene:Gga.16362
STRING:Q5ZK71 Ensembl:ENSGALT00000002250 GeneID:416771
KEGG:gga:416771 NextBio:20820183 Uniprot:Q5ZK71
Length = 862
Score = 150 (57.9 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 60/246 (24%), Positives = 111/246 (45%)
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEML---QQQDALHENITVARVVFHEI 465
T +K ++V G ++++L D D+EGE I + +++ + + E + + R F I
Sbjct: 97 TMVKFLQVEGRGCDSIVLWLDCDKEGENICFEVLDAVLPVMNKSPSTERM-IYRAKFSSI 155
Query: 466 TEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQ--------SAG 517
T+ I A+ E + N + AR+ LD IG + + G S G
Sbjct: 156 TDTDICNAMNHLGEPNLNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFG 215
Query: 518 RVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQL 577
Q+ L +R +I FKP+ YW ++A ++ ++ SL T + + F + + Q+
Sbjct: 216 PCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNPEKESSL-TLDWD-RVRVFD-REIAQM 272
Query: 578 SIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMK 637
+ AK E K+ S SK+ V++ P T + + A+ L + M+
Sbjct: 273 FLNITKMAK--EAKVESV-------SKKEKVKQRPLALNTVEMLRVASAALGMGPQHAMQ 323
Query: 638 LAQKLY 643
+A++LY
Sbjct: 324 IAERLY 329
Score = 107 (42.7 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 32/116 (27%), Positives = 59/116 (50%)
Query: 808 LNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNY 867
L S + GD +GE++L + T PP +E L+ +E+ GIG ++ + + RNY
Sbjct: 467 LPSCEKGDLFPVGEIKLLEMQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNY 526
Query: 868 VTVKS-RILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLL 922
VTV+S R L P G ++ +E+ + + +E +L+ ++ G + +L
Sbjct: 527 VTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIALGKANYHQVL 582
>WB|WBGene00012995 [details] [associations]
symbol:Y48C3A.14 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0032259
"methylation" evidence=IEA] [GO:0003916 "DNA topoisomerase
activity" evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005694 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 EMBL:AL117203 GeneID:174978
KEGG:cel:CELE_Y48C3A.14 CTD:174978 RefSeq:NP_001254381.1
ProteinModelPortal:H1UBJ9 SMR:H1UBJ9 EnsemblMetazoa:Y48C3A.14a
WormBase:Y48C3A.14a OMA:QMFLNIT Uniprot:H1UBJ9
Length = 869
Score = 145 (56.1 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 65/258 (25%), Positives = 114/258 (44%)
Query: 421 AENLILASDPDREGEAIAWHIVEMLQ------QQDALHENITVARVVFHEITEASIKVAL 474
A+ L+L D D+EGE I + +++ ++ +QD + + V R F ITE IK A+
Sbjct: 109 ADFLVLWLDCDKEGENICFEVIDAVKCAMFKNRQDFMSD---VYRAHFSAITEKDIKAAM 165
Query: 475 QAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQ--------SAGRVQSAALSL 526
+ D N+ + AR+ LD IG + + + G S G Q+ L
Sbjct: 166 RNLGRPDQNMSHSVDARQELDLRIGCSFTRFQTKFFQGKYGDLDSNVISYGPCQTPTLGF 225
Query: 527 ICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAK 586
R +I +FKP++YW ++ + + FS P +Q R+ + A+
Sbjct: 226 CVTRHDQIVQFKPEQYWVLKTNFTTSDDGQI--FS-P----EWQRGRIFDAEV-----AR 273
Query: 587 DIEQKINSANFQVIKN-SKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
+I + ++ + SK+ ++ P T L + A++ L S + TM +A+ LY
Sbjct: 274 VFVDRIKKCHTGLVLDVSKKEARKERPCALNTVELMRVASSSLGMSPSTTMHVAEALY-- 331
Query: 646 VQLPDGTAAGLITYMRTD 663
G I+Y RT+
Sbjct: 332 -------TQGYISYPRTE 342
Score = 110 (43.8 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 32/118 (27%), Positives = 59/118 (50%)
Query: 803 EAFAILNSLKT-GDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKV 861
E ++ SL+ G + L E++ T PP +E L+ +E+ GIG ++ +
Sbjct: 464 EECSVPKSLQQIGAKIELQNAEIQARETTPPGYLTEAELITLMEKHGIGTDASIPVHINT 523
Query: 862 LQDRNYVTVKS-RILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEW 918
+ RNYVTV+S R L P G+ + E+ + A++E +L+ V++G ++
Sbjct: 524 ITQRNYVTVESGRRLVPTRLGQCLVRGYWKVDPELVLPTMRAELEEQLNLVASGKADY 581
Score = 37 (18.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 1051 DRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHP 1090
D TG L A V S L D ++ + V+ G+HP
Sbjct: 351 DLTGTLKILAGDRKWGSVVSQVLADGIKRPKSGVDKGDHP 390
>UNIPROTKB|F1RL05 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9823 "Sus scrofa"
[GO:0007059 "chromosome segregation" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940 OMA:GNKERDE
EMBL:CU468588 RefSeq:XP_003359220.1 Ensembl:ENSSSCT00000011039
GeneID:100155140 KEGG:ssc:100155140 ArrayExpress:F1RL05
Uniprot:F1RL05
Length = 859
Score = 145 (56.1 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
Identities = 59/243 (24%), Positives = 105/243 (43%)
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVE-MLQQQDALH-ENITVARVVFHEITEA 468
+K ++V G + ++L D D+EGE I + +++ +L + H TV R F IT+
Sbjct: 99 VKFLQVEGKGCDYIVLWLDCDKEGENICFEVLDAVLPVMNQAHGSEKTVFRARFSSITDT 158
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQ--------SAGRVQ 520
I A+ E D N + AR+ LD IG + + G S G Q
Sbjct: 159 DICNAMAHLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSLISFGPCQ 218
Query: 521 SAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIG 580
+ L +R +I FKP+ YW ++A ++ + SL + + F + + Q+ +
Sbjct: 219 TPTLGFCVERHDKIQSFKPETYWVLQAKVNTDQDRSL-LLDWD-RVRVFD-REIAQMFLN 275
Query: 581 SHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQ 640
K+ QV SK+ ++ P T + + A++ L + M+ A+
Sbjct: 276 MTKPEKEA---------QVEATSKKEKTKQRPLALNTVEMLRVASSALGMGPQHAMQTAE 326
Query: 641 KLY 643
+LY
Sbjct: 327 RLY 329
Score = 107 (42.7 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
Identities = 30/116 (25%), Positives = 60/116 (51%)
Query: 808 LNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNY 867
L + + GD +GEV++ + T PP +E L+ +E+ GIG ++ + + RNY
Sbjct: 467 LPTCQKGDTFAVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNY 526
Query: 868 VTVKS-RILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLL 922
V V+S R L P G ++ +E+ + + +E +L+ ++ G +++ +L
Sbjct: 527 VVVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVL 582
>UNIPROTKB|O95985 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0003677 "DNA binding" evidence=TAS] [GO:0003916
"DNA topoisomerase activity" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0007059
GO:GO:0000793 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
GO:GO:0003916 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
KO:K03165 EMBL:AF053082 EMBL:D87012 EMBL:AF017146 EMBL:AF125216
EMBL:CR456596 EMBL:BC002432 IPI:IPI00216815 IPI:IPI00216816
IPI:IPI00292671 RefSeq:NP_003926.1 UniGene:Hs.436401
ProteinModelPortal:O95985 SMR:O95985 IntAct:O95985
MINT:MINT-1458306 STRING:O95985 PhosphoSite:O95985 PaxDb:O95985
PRIDE:O95985 DNASU:8940 Ensembl:ENST00000357179
Ensembl:ENST00000398793 GeneID:8940 KEGG:hsa:8940 UCSC:uc002zvs.3
CTD:8940 GeneCards:GC22M022309 HGNC:HGNC:11993 HPA:CAB009198
MIM:603582 neXtProt:NX_O95985 PharmGKB:PA36674 HOGENOM:HOG000184378
HOVERGEN:HBG059857 InParanoid:O95985 OMA:GNKERDE OrthoDB:EOG4ZPDTK
PhylomeDB:O95985 ChEMBL:CHEMBL3127 GenomeRNAi:8940 NextBio:33622
ArrayExpress:O95985 Bgee:O95985 CleanEx:HS_TOP3B
Genevestigator:O95985 GermOnline:ENSG00000100038 Uniprot:O95985
Length = 862
Score = 141 (54.7 bits), Expect = 9.8e-12, Sum P(2) = 9.8e-12
Identities = 59/244 (24%), Positives = 104/244 (42%)
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVE-MLQQQDALHENI-TVARVVFHEITEA 468
+K ++V G + ++L D D+EGE I + +++ +L + H TV R F IT+
Sbjct: 99 VKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDT 158
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQ--------SAGRVQ 520
I A+ E D N + AR+ LD IG + + G S G Q
Sbjct: 159 DICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSLISFGPCQ 218
Query: 521 SAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIG 580
+ L +R +I FKP+ YW ++A ++ + SL L + R+ I
Sbjct: 219 TPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSL--------LLDWDRVRVFDREIA 270
Query: 581 S-HTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLA 639
+E++ QV S++ ++ P T + + A++ L + M+ A
Sbjct: 271 QMFLNMTKLEKEA-----QVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTA 325
Query: 640 QKLY 643
++LY
Sbjct: 326 ERLY 329
Score = 111 (44.1 bits), Expect = 9.8e-12, Sum P(2) = 9.8e-12
Identities = 31/116 (26%), Positives = 61/116 (52%)
Query: 808 LNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNY 867
L + + GD +GEV++ + T PP +E L+ +E+ GIG ++ + + RNY
Sbjct: 467 LPTCQRGDAFPVGEVKMLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNY 526
Query: 868 VTVKS-RILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLL 922
VTV+S R L P G ++ +E+ + + +E +L+ ++ G +++ +L
Sbjct: 527 VTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVL 582
>TAIR|locus:2045517 [details] [associations]
symbol:AT2G32000 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA;ISS] [GO:0005576
"extracellular region" evidence=ISM] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS] [GO:0006268 "DNA unwinding involved in
replication" evidence=ISS] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005694 EMBL:CP002685 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 KO:K03165
OMA:QMFLNIT IPI:IPI00534869 RefSeq:NP_180760.2 UniGene:At.38130
PRIDE:F4ISQ7 EnsemblPlants:AT2G32000.1 GeneID:817760
KEGG:ath:AT2G32000 Uniprot:F4ISQ7
Length = 865
Score = 152 (58.6 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 72/289 (24%), Positives = 118/289 (40%)
Query: 372 YEVLPSYGHVR--DLAARS---GSVRPDDDFSM-VWEVPSAAWTHL-KSIKVALSGAENL 424
Y V GHV D + ++ P D F + + S H+ + + G +
Sbjct: 52 YRVTSVIGHVFSVDFPEKYQNWATIDPQDLFDAPIIKKESNPKAHICRHLSNEARGCSYM 111
Query: 425 ILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANL 484
+L D DREGE I + ++E D V R F +TE I A+ E + +
Sbjct: 112 VLWLDCDREGENICFEVIESTGF-DMKDSKRKVYRARFSSVTEKDISKAMDNLVEPNRDE 170
Query: 485 VQAYLARRALDYLIGFNISPLLWRKLPG------CQ--SAGRVQSAALSLICDREMEIDE 536
A AR+ +D +G S G C+ S G Q+ L R M I+
Sbjct: 171 ALAVDARQEIDLKVGVAFSRFQTSYFQGKYQNLDCRVISYGPCQTPTLGFCVQRYMHINT 230
Query: 537 FKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK--INS 594
FKP+++W + + +K+ + L ++ +RL L EA + QK +
Sbjct: 231 FKPEKFWALRPYI-RKDGYELQL--------EWERRRLFDL------EAATVFQKLVVEG 275
Query: 595 ANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLY 643
+V+ S++ V+ P T L + A++ L F M LA++LY
Sbjct: 276 RTAKVMDVSEKQEVKGRPAGLNTVNLLKVASSALGFGPQTAMHLAERLY 324
Score = 99 (39.9 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 39/166 (23%), Positives = 76/166 (45%)
Query: 808 LNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNY 867
L S G+ + + VEL + +T PP +E L+ +E+ GIG ++ A + + +RNY
Sbjct: 461 LPSFLKGERIEVLRVELYEGNTAPPDYLTESELISLMEKHGIGTDASIAVHINNIGERNY 520
Query: 868 VTVKS-RILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYW 926
V V+S R + P G + ++ + +E ++ V+ G + ++
Sbjct: 521 VQVQSGRKMVPTALGITLIRGYQCIDPDLCLPDIRSFIEQQITLVAKGQADHSHVVQHVI 580
Query: 927 SRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGE 972
+F S + Q+E M + F ++ F+ L + R+ CG+
Sbjct: 581 QQFRRKF----SYFVQQIEHM-DALF-EAQFSPLADSGRALSKCGK 620
>GENEDB_PFALCIPARUM|PF13_0251 [details] [associations]
symbol:PF13_0251 "DNA topoisomerase III,
putative" species:5833 "Plasmodium falciparum" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
Pfam:PF01131 PRINTS:PR00417 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 EMBL:AL844509
GO:GO:0006265 GO:GO:0003918 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 KO:K03165 Gene3D:1.10.290.10 HOGENOM:HOG000184377
OMA:IGLMDAN RefSeq:XP_001350185.1 ProteinModelPortal:Q8IDM7
EnsemblProtists:PF13_0251:mRNA GeneID:814216 KEGG:pfa:PF13_0251
EuPathDB:PlasmoDB:PF3D7_1347100 ProtClustDB:CLSZ2514997
Uniprot:Q8IDM7
Length = 710
Score = 120 (47.3 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 33/123 (26%), Positives = 64/123 (52%)
Query: 807 ILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRN 866
I+ S + D Y + +++ TQPP SE +L+ +++ IG +T ++ +Q RN
Sbjct: 553 IIPSFQVDDEFYPTSLLIEEGITQPPKYLSESNLLTLMDKFSIGTDATMHEHIENIQKRN 612
Query: 867 YVTVKSRILY-PEFRG-RMVSAF--LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLL 922
YV S+ L+ P G +V ++ ++TD S A ME ++ V++G+ + ++
Sbjct: 613 YVIKNSKSLFIPTNLGIALVQSYKKFKDIGIDLTDPSLRAKMEKDMSLVASGVKQKNEII 672
Query: 923 VDY 925
+Y
Sbjct: 673 RNY 675
Score = 109 (43.4 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 37/144 (25%), Positives = 68/144 (47%)
Query: 424 LILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDAN 483
LIL D DREGE I + ++ + + + + R F +TE I A+ +E + N
Sbjct: 113 LILWLDCDREGEHICFEVINACR---ITNRKLIIHRAQFSAVTEKDIIHAINNLKEPNKN 169
Query: 484 LVQAYLARRALDYLIG--FN-ISPLLWRKLPGCQSA----GRVQSAALSLICDREMEIDE 536
L + RR +D +G F + + +L +++ G Q L + +R ++I
Sbjct: 170 LAYSVDVRREIDLRMGSIFTRFMTIRYIELVKHETSIISYGPCQFPTLGFVVNRYLDIKN 229
Query: 537 FKPQEYWTVEA--VLDKKESHSLD 558
FK + YW+++ V + E + +D
Sbjct: 230 FKNEYYWSIKMKYVYNNDEINPMD 253
Score = 66 (28.3 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 43/151 (28%), Positives = 63/151 (41%)
Query: 600 IKNSKRSMVRKNPTPYITSTLQQDAANKLNF--SATYTMKLAQKLYEGVQLPDGTAAGLI 657
I N S RK PY +TLQ + F S+ M LA+KLY G I
Sbjct: 370 ITNVYESETRKYK-PYPLNTLQMTKLVSIYFKISSKECMMLAEKLYN---------KGYI 419
Query: 658 TYMRTDGLHISDEAA--KEIRSLIF-ERYG--SHHAPEEGPRKYFKKVKNAQEAHEAIRP 712
+Y RT+ + D K I L + +G ++ EE + +K K +AH I P
Sbjct: 420 SYPRTETNYFPDSMNLHKIINELRKNDNFGWYANKLCEEHKYQKPRKGKMNDKAHPPIHP 479
Query: 713 TDIRRLPAMLSGLLDEDCLKLYSLIWSRTMA 743
++ + L ++E KLY I +A
Sbjct: 480 --VKNMNKSLK--VEEKEWKLYEFICKHFLA 506
>UNIPROTKB|Q8IDM7 [details] [associations]
symbol:PF13_0251 "DNA topoisomerase III, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
Pfam:PF01131 PRINTS:PR00417 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 EMBL:AL844509
GO:GO:0006265 GO:GO:0003918 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 KO:K03165 Gene3D:1.10.290.10 HOGENOM:HOG000184377
OMA:IGLMDAN RefSeq:XP_001350185.1 ProteinModelPortal:Q8IDM7
EnsemblProtists:PF13_0251:mRNA GeneID:814216 KEGG:pfa:PF13_0251
EuPathDB:PlasmoDB:PF3D7_1347100 ProtClustDB:CLSZ2514997
Uniprot:Q8IDM7
Length = 710
Score = 120 (47.3 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 33/123 (26%), Positives = 64/123 (52%)
Query: 807 ILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRN 866
I+ S + D Y + +++ TQPP SE +L+ +++ IG +T ++ +Q RN
Sbjct: 553 IIPSFQVDDEFYPTSLLIEEGITQPPKYLSESNLLTLMDKFSIGTDATMHEHIENIQKRN 612
Query: 867 YVTVKSRILY-PEFRG-RMVSAF--LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLL 922
YV S+ L+ P G +V ++ ++TD S A ME ++ V++G+ + ++
Sbjct: 613 YVIKNSKSLFIPTNLGIALVQSYKKFKDIGIDLTDPSLRAKMEKDMSLVASGVKQKNEII 672
Query: 923 VDY 925
+Y
Sbjct: 673 RNY 675
Score = 109 (43.4 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 37/144 (25%), Positives = 68/144 (47%)
Query: 424 LILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDAN 483
LIL D DREGE I + ++ + + + + R F +TE I A+ +E + N
Sbjct: 113 LILWLDCDREGEHICFEVINACR---ITNRKLIIHRAQFSAVTEKDIIHAINNLKEPNKN 169
Query: 484 LVQAYLARRALDYLIG--FN-ISPLLWRKLPGCQSA----GRVQSAALSLICDREMEIDE 536
L + RR +D +G F + + +L +++ G Q L + +R ++I
Sbjct: 170 LAYSVDVRREIDLRMGSIFTRFMTIRYIELVKHETSIISYGPCQFPTLGFVVNRYLDIKN 229
Query: 537 FKPQEYWTVEA--VLDKKESHSLD 558
FK + YW+++ V + E + +D
Sbjct: 230 FKNEYYWSIKMKYVYNNDEINPMD 253
Score = 66 (28.3 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 43/151 (28%), Positives = 63/151 (41%)
Query: 600 IKNSKRSMVRKNPTPYITSTLQQDAANKLNF--SATYTMKLAQKLYEGVQLPDGTAAGLI 657
I N S RK PY +TLQ + F S+ M LA+KLY G I
Sbjct: 370 ITNVYESETRKYK-PYPLNTLQMTKLVSIYFKISSKECMMLAEKLYN---------KGYI 419
Query: 658 TYMRTDGLHISDEAA--KEIRSLIF-ERYG--SHHAPEEGPRKYFKKVKNAQEAHEAIRP 712
+Y RT+ + D K I L + +G ++ EE + +K K +AH I P
Sbjct: 420 SYPRTETNYFPDSMNLHKIINELRKNDNFGWYANKLCEEHKYQKPRKGKMNDKAHPPIHP 479
Query: 713 TDIRRLPAMLSGLLDEDCLKLYSLIWSRTMA 743
++ + L ++E KLY I +A
Sbjct: 480 --VKNMNKSLK--VEEKEWKLYEFICKHFLA 506
>MGI|MGI:1333803 [details] [associations]
symbol:Top3b "topoisomerase (DNA) III beta" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IMP]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 UniProt:Q9Z321 Pfam:PF01751 MGI:MGI:1333803
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0000793
GO:GO:0006265 PROSITE:PS50880 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940
HOGENOM:HOG000184378 HOVERGEN:HBG059857 OMA:GNKERDE
OrthoDB:EOG4ZPDTK EMBL:AB013603 EMBL:BC031723 IPI:IPI00131337
RefSeq:NP_035754.1 UniGene:Mm.326089 ProteinModelPortal:Q9Z321
SMR:Q9Z321 STRING:Q9Z321 PhosphoSite:Q9Z321 PaxDb:Q9Z321
PRIDE:Q9Z321 Ensembl:ENSMUST00000023465 Ensembl:ENSMUST00000119787
GeneID:21976 KEGG:mmu:21976 InParanoid:Q9Z321 ChiTaRS:TOP3B
NextBio:301682 Bgee:Q9Z321 CleanEx:MM_TOP3B Genevestigator:Q9Z321
GermOnline:ENSMUSG00000022779
Length = 862
Score = 140 (54.3 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 62/245 (25%), Positives = 103/245 (42%)
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVE-MLQQQDALHENI-TVARVVFHEITEA 468
+K ++V G + ++L D D+EGE I + +++ +L + H TV R F IT+
Sbjct: 99 VKFLQVEGRGCDYVVLWLDCDKEGENICFEVLDAVLPVMNNAHNGEKTVFRARFSSITDT 158
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQ--------SAGRVQ 520
I A+ E D N + AR+ LD IG + + G S G Q
Sbjct: 159 DICNAMTRLSEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSLISFGPCQ 218
Query: 521 SAALSLICDREMEIDEFKPQEYWTVEAVL--DKKESHSLDTFSFPAHLTHFQSKRLNQLS 578
+ L +R +I FKP+ YW ++A + DK+ES LD LN
Sbjct: 219 TPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIAQMFLNMTK 278
Query: 579 IGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKL 638
+ EA V S++ ++ P T + + A++ L + M++
Sbjct: 279 L--EKEA------------WVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQI 324
Query: 639 AQKLY 643
A++LY
Sbjct: 325 AERLY 329
Score = 109 (43.4 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 31/116 (26%), Positives = 60/116 (51%)
Query: 808 LNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNY 867
L + + GD +GEV++ + T PP +E L+ +E+ GIG ++ + + RNY
Sbjct: 467 LPTCQKGDTFTVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNY 526
Query: 868 VTVKS-RILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLL 922
VTV+S R L P G ++ +E+ + + +E +L+ ++ G ++ +L
Sbjct: 527 VTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYHQVL 582
>RGD|1309468 [details] [associations]
symbol:Top3b "topoisomerase (DNA) III beta" species:10116
"Rattus norvegicus" [GO:0000793 "condensed chromosome"
evidence=IEA;ISO] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0007059 "chromosome segregation" evidence=IEA;ISO]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 RGD:1309468
InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793 EMBL:CH473999
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940
OrthoDB:EOG4ZPDTK OMA:QMFLNIT IPI:IPI00370440 RefSeq:NP_001099331.1
UniGene:Rn.23773 Ensembl:ENSRNOT00000002524 GeneID:287930
KEGG:rno:287930 NextBio:627240 Uniprot:D4A9Z2
Length = 862
Score = 142 (55.0 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 63/245 (25%), Positives = 111/245 (45%)
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVE-MLQQQDALHENI-TVARVVFHEITEA 468
+K ++V G + ++L D D+EGE I + +++ +L + H TV R F IT+
Sbjct: 99 VKFLQVEGRGCDYVVLWLDCDKEGENICFEVLDAVLPVLNNAHNGEKTVFRARFSSITDT 158
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQ--------SAGRVQ 520
I A+ E D N + AR+ LD IG + + G S G Q
Sbjct: 159 DICNAMTRLTEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSLISFGPCQ 218
Query: 521 SAALSLICDREMEIDEFKPQEYWTVEAVL--DKKESHSLDTFSFPAHLTHFQSKRLNQLS 578
+ L +R +I FKP+ YW ++A + DK+ES LD + F + + Q+
Sbjct: 219 TPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDW----DRVRVFD-REIAQMF 273
Query: 579 IGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKL 638
+ T+ +E++ V SK+ ++ P T + + A++ L + M++
Sbjct: 274 LNM-TK---LEKEA-----WVEATSKKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQV 324
Query: 639 AQKLY 643
A++LY
Sbjct: 325 AERLY 329
Score = 105 (42.0 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 30/116 (25%), Positives = 59/116 (50%)
Query: 808 LNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNY 867
L + + GD +GEV++ + T PP +E L+ +E+ GIG ++ + + RNY
Sbjct: 467 LPTCQKGDTFTVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNY 526
Query: 868 VTVKS-RILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLL 922
VTV++ R L P G ++ +E+ + + +E +L+ ++ G + +L
Sbjct: 527 VTVENGRRLKPTNLGIVLVHGYHKIDAELVLPTIRSAVEKQLNLIAQGKANYHQVL 582
>ZFIN|ZDB-GENE-070705-37 [details] [associations]
symbol:top3b "topoisomerase (DNA) III beta"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
ZFIN:ZDB-GENE-070705-37 GO:GO:0005694 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 EMBL:BX005237 EMBL:CR933528
IPI:IPI01016652 ProteinModelPortal:F1QNX4
Ensembl:ENSDART00000030553 Bgee:F1QNX4 Uniprot:F1QNX4
Length = 862
Score = 155 (59.6 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 60/243 (24%), Positives = 109/243 (44%)
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQ-QDALHENI-TVARVVFHEITEA 468
+K ++V G + ++L D D+EGE I + +++ +Q + + N TV R F IT+
Sbjct: 99 VKFLQVEAKGCDYVVLWLDCDKEGENICFEVLDAIQPVMNKPYGNERTVYRAKFSSITDT 158
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQ--------SAGRVQ 520
I A+ E + N + AR+ LD IG + + G S G Q
Sbjct: 159 DICNAMNRLGEPNKNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFGPCQ 218
Query: 521 SAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIG 580
+ L +R +I FKP+ YW V+A + S T + + F + + Q+ +
Sbjct: 219 TPTLGFCVERHDKIQSFKPEAYWVVQAKVANFGKDSPLTLDWD-RVRVFD-RDIGQMFVN 276
Query: 581 SHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQ 640
AK E +++S +K+ ++ P T + + A++ L +TM++A+
Sbjct: 277 MAKTAK--EARVDSV-------TKKEKAKQRPLALNTVEMLRVASSALGMGPQHTMQIAE 327
Query: 641 KLY 643
+LY
Sbjct: 328 RLY 330
Score = 91 (37.1 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 814 GDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS- 872
G+ + E++L + T PP +E L+ +E+ GIG ++ + + RNYVTV+S
Sbjct: 474 GEMFTVDEIKLLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 533
Query: 873 RILYP 877
R L P
Sbjct: 534 RKLKP 538
>UNIPROTKB|E2R770 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9615 "Canis lupus
familiaris" [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059
GO:GO:0000793 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
KO:K03165 CTD:8940 OMA:GNKERDE EMBL:AAEX03014902 RefSeq:XP_534771.2
Ensembl:ENSCAFT00000024557 GeneID:477576 KEGG:cfa:477576
Uniprot:E2R770
Length = 862
Score = 146 (56.5 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 59/244 (24%), Positives = 104/244 (42%)
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVE-MLQQQDALHENI-TVARVVFHEITEA 468
+K ++V G + ++L D D+EGE I + +++ +L + H TV R F IT+
Sbjct: 99 VKFLQVEGKGCDYIVLWLDCDKEGENICFEVLDAVLPVMNPTHSGEKTVFRARFSSITDT 158
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQ--------SAGRVQ 520
I A+ E D N + AR+ LD IG + + G S G Q
Sbjct: 159 DICAAMARLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFGPCQ 218
Query: 521 SAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIG 580
+ L +R +I FKP+ YW ++A ++ + SL L + R+ I
Sbjct: 219 TPTLGFCVERHDKIQSFKPETYWVLQAKVNADKDRSL--------LLDWDRVRVFDREIA 270
Query: 581 S-HTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLA 639
+E++ QV S++ ++ P T + + A++ L + M+ A
Sbjct: 271 QMFLNMTKLEKEA-----QVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTA 325
Query: 640 QKLY 643
++LY
Sbjct: 326 ERLY 329
Score = 100 (40.3 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 29/116 (25%), Positives = 60/116 (51%)
Query: 808 LNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNY 867
L + + GD + E+++ + T PP +E L+ +E+ GIG ++ + + RNY
Sbjct: 467 LPTCQRGDCFPVSEMKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNY 526
Query: 868 VTVKS-RILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLL 922
VTV+S R L P G ++ +E+ + + +E +L+ ++ G +++ +L
Sbjct: 527 VTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVL 582
>POMBASE|SPBC16G5.12c [details] [associations]
symbol:top3 "DNA topoisomerase III" species:4896
"Schizosaccharomyces pombe" [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0000280 "nuclear division"
evidence=IMP] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=TAS] [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006259
"DNA metabolic process" evidence=IGI] [GO:0006261 "DNA-dependent
DNA replication" evidence=IMP] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IMP]
[GO:0031297 "replication fork processing" evidence=NAS] [GO:0031422
"RecQ helicase-Topo III complex" evidence=TAS] [GO:0043007
"maintenance of rDNA" evidence=IMP] [GO:0045910 "negative
regulation of DNA recombination" evidence=TAS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 PomBase:SPBC16G5.12c Pfam:PF01751 InterPro:IPR006171
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0000070 GO:GO:0045910 GO:GO:0031297
GO:GO:0000712 GO:GO:0007000 GO:GO:0043007 GO:GO:0006265
PROSITE:PS50880 GO:GO:0031422 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165 Gene3D:1.10.290.10
HOGENOM:HOG000184377 OMA:IGLMDAN EMBL:AF126287 PIR:T39604
RefSeq:NP_596761.1 ProteinModelPortal:O60126 STRING:O60126
EnsemblFungi:SPBC16G5.12c.1 GeneID:2539881 KEGG:spo:SPBC16G5.12c
OrthoDB:EOG4KWP2D NextBio:20801026 Uniprot:O60126
Length = 622
Score = 198 (74.8 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 111/457 (24%), Positives = 191/457 (41%)
Query: 388 SGSVRPDD---DFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEM 444
S S P D D ++ V A +IK A+ L + +D DREGE I VE+
Sbjct: 73 SWSSVPQDVLFDAQIITSVSKNAEVLADNIKKEARNAQYLYIWTDCDREGEHIG---VEI 129
Query: 445 LQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISP 504
A + +I V R F+ + + I A + R++ N A AR LD+ +G +
Sbjct: 130 SNVARASNPSIQVIRADFNNLERSHIISAAKRPRDVSKNAADAVDARIELDFRLGAIFTR 189
Query: 505 L----LWRKLPGCQ----SAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHS 556
L L + Q S G Q L + DR +++F P+ YW + V DK++ +
Sbjct: 190 LQTIQLQKSFDILQNKIISYGPCQFPTLGFVVDRWQRVEDFVPETYWHLRFV-DKRQGKT 248
Query: 557 LDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYI 616
+ F++ ++K ++L T +E + +V+ +++ + P P
Sbjct: 249 IQ-FNWE------RAKVFDRL-----TTMIILENCLECKTAKVVNITQKPKTKYKPLPLS 296
Query: 617 TSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIR 676
T L + L SA T++LA+ LY G ++Y RT+ +++ +
Sbjct: 297 TVELTKLGPKHLRISAKKTLELAENLYTN---------GFVSYPRTETDQF--DSSMNLH 345
Query: 677 SLIFERYGSHH--APEEG--PRKYF--KKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDC 730
++I + G+ + EG Y +K K+ AH I P + A+ S +D
Sbjct: 346 AIIQKLTGAQEWDSYAEGLLAGDYRPPRKGKHNDRAHPPIHPVQMVHRSALPS----QDH 401
Query: 731 LKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQA-AYEDVDAG 789
K+Y LI R +AC A + V + +E + + E + YE ++
Sbjct: 402 WKVYELITRRFLACCSDNAKGAETLVQV-KMEEELFSKKGLLVTEKNYLEVYPYEKWESS 460
Query: 790 --AIRYKENEENDRHEAFAILNSLKTGDPLYLGEVEL 824
Y+ +EE H +++S T P Y+ E EL
Sbjct: 461 DQLPEYRLHEEFQPH-ILDMMDS-STSSPSYITEPEL 495
Score = 38 (18.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1049 GEDRTGYLPKRASVSHIKDVDSITLEDAL 1077
G+ T ++P V+ K D I LE +L
Sbjct: 530 GQGVTEFVPSSLGVALAKGYDEIGLEWSL 558
>TIGR_CMR|BA_1905 [details] [associations]
symbol:BA_1905 "DNA topoisomerase III" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005738 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 HSSP:P14294
HOGENOM:HOG000086847 KO:K03169 ProtClustDB:PRK07726
TIGRFAMs:TIGR01056 RefSeq:NP_844316.1 RefSeq:YP_018548.1
RefSeq:YP_028031.1 ProteinModelPortal:Q81RY0 DNASU:1086238
EnsemblBacteria:EBBACT00000010748 EnsemblBacteria:EBBACT00000015345
EnsemblBacteria:EBBACT00000022649 GeneID:1086238 GeneID:2818036
GeneID:2849054 KEGG:ban:BA_1905 KEGG:bar:GBAA_1905 KEGG:bat:BAS1767
OMA:GAYMTWA BioCyc:BANT260799:GJAJ-1836-MONOMER
BioCyc:BANT261594:GJ7F-1910-MONOMER InterPro:IPR025589 Pfam:PF13342
Uniprot:Q81RY0
Length = 714
Score = 186 (70.5 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 122/513 (23%), Positives = 213/513 (41%)
Query: 401 WEVPSAAWTHLKSIKVALSGAE--NLILASDPDREGEAIAWHIVEMLQQQDALHENITVA 458
+EV + + +K L + +I A D REGE I +I+ + Q + + + ++
Sbjct: 79 FEVTKSKYKQFNVVKQLLHNPQVTEIIHAGDAGREGELIVRNIINLCNVQKPM-KRLWIS 137
Query: 459 RVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISP----LLWRK-LPGC 513
+ I + K L + I+ +AY R D+++G N S LL +K +
Sbjct: 138 SLTKQAIYQG-FKNLLDESDTINT-YYEAY-TRSCADWVVGMNASRVFSILLKKKGMNDV 194
Query: 514 QSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKR 573
SAGRVQ+ L+LI RE EI+ FK + +W V A TF+ + ++
Sbjct: 195 FSAGRVQTPTLALIVKREKEIENFKSEPFWEVFA-----------TFNIEGKKYDGKWEK 243
Query: 574 LNQLSIGSHTEAKDIEQKINS---ANFQVIKNSKRSMVR-KNPTPYITSTLQQDAANKLN 629
N+ S + D+ KI + V+K K + P + S+LQ A
Sbjct: 244 DNE----SRLQDPDMANKIAAFCQGKPAVVKEMKTERKEFQPPLLFNLSSLQATANKAFK 299
Query: 630 FSATYTMKLAQKLYE-GVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERY-GSHH 687
FS T+ + Q LY+ G+ + + +T + + D K + F+ Y G
Sbjct: 300 FSPKKTLDITQALYQKGIVSYPRSDSNYVT--QGEAATFPDILQKLSQ---FDEYKGLLP 354
Query: 688 APEEG--PRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSG----LLDEDCLKL----YSL- 736
AP E K + K + H AI PT+ P+ LSG + D +L Y +
Sbjct: 355 APVESIMNNKRYVNEKKVTD-HYAIIPTEQVTNPSRLSGDEKKIYDMIVRRLIAAHYEVA 413
Query: 737 IWSRTMACQM---QPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRY 793
I+ T + + + + + I ++F+ L A E+ ++
Sbjct: 414 IFDYTTIVTLVDERAEFISKGKQQIQEGWRKVIFQDDKDDETILPIVAEGEEGKVVKVKV 473
Query: 794 KENEEND--RHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGR 851
KE + R+ ++ +KT YL EL++ ++KK E G+G
Sbjct: 474 KEGKTQPPKRYTEGQLITLMKTAGK-YLENEELEK-------------VLKKTE--GLGT 517
Query: 852 PSTYASTLKVLQDRNYVTVKSRILYPEFRGRMV 884
+T A + +L+DR Y+ VK +Y +G+++
Sbjct: 518 EATRAGIITMLKDRKYIDVKKNQVYATDKGKVL 550
>ASPGD|ASPL0000072189 [details] [associations]
symbol:AN4555 species:162425 "Emericella nidulans"
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
[GO:0006268 "DNA unwinding involved in replication" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0043007 "maintenance of rDNA"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
EMBL:BN001303 EMBL:AACD01000078 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165
Gene3D:1.10.290.10 HOGENOM:HOG000184377 OMA:IGLMDAN
OrthoDB:EOG4KWP2D RefSeq:XP_662159.1 ProteinModelPortal:Q5B4H5
STRING:Q5B4H5 EnsemblFungi:CADANIAT00005883 GeneID:2872352
KEGG:ani:AN4555.2 Uniprot:Q5B4H5
Length = 629
Score = 146 (56.5 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 57/231 (24%), Positives = 96/231 (41%)
Query: 421 AENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREI 480
++ L++ +D DREGE I E+ Q A + I V R F+ + + A ++ E+
Sbjct: 113 SQYLVIWTDCDREGEHIG---TEVRDQAKAGNGRIVVKRAKFNNTEKIHVLNAARSLIEL 169
Query: 481 DANLVQAYLARRALDYLIGFNISPLLWRKLPGCQ--------SAGRVQSAALSLICDREM 532
D A AR LD IG + LL +L S G Q L + DR +
Sbjct: 170 DERQANAVAARIELDLRIGAAFTRLLTLQLQNLHATLTQKVISYGSCQFPTLGFVVDRYL 229
Query: 533 EIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKI 592
+ FKP+ +W ++ + H+ D F R++ + T +E+ +
Sbjct: 230 RVKRFKPETFWGIKVM------HTRDGIK-----VSFLWNRVHLFDRAAVTIM--LERCL 276
Query: 593 NSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLY 643
+ +V K +++ + P P T LQ L + MK+A+ LY
Sbjct: 277 MATKAEVTKVNQKPTSKWRPLPLTTVDLQMMGTKYLRMDSAKVMKIAENLY 327
Score = 80 (33.2 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 37/148 (25%), Positives = 61/148 (41%)
Query: 726 LDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYED 785
L ED K+Y + R +AC A V+I DE +F + L + Y D
Sbjct: 400 LTEDERKVYEFVTRRFLACCSDDAKGQSTDVEIRYGDE--MFHAH----GLLVLERNYLD 453
Query: 786 VDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLE 845
V Y D+ E+ L + + G+ E + T PP +E L+ ++
Sbjct: 454 VYV----Y------DKWESTQQLPNYQVGELFEPTEANMFDGKTSPPNYLTEPELIGLMD 503
Query: 846 ELGIGRPSTYASTLKVLQDRNYVTVKSR 873
GIG +T A ++ ++ R Y+ +R
Sbjct: 504 ANGIGTDATMAEHIERIKSREYIGEMTR 531
>DICTYBASE|DDB_G0275257 [details] [associations]
symbol:top3 "DNA topoisomerase III" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0003917
"DNA topoisomerase type I activity" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 dictyBase:DDB_G0275257
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GenomeReviews:CM000151_GR EMBL:AAFI02000013 GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
KO:K03165 Gene3D:1.10.290.10 RefSeq:XP_643754.2 HSSP:O29238
ProteinModelPortal:Q8T2T7 STRING:Q8T2T7 EnsemblProtists:DDB0234226
GeneID:8619798 KEGG:ddi:DDB_G0275257 OMA:IKRLWIN Uniprot:Q8T2T7
Length = 828
Score = 154 (59.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 87/320 (27%), Positives = 132/320 (41%)
Query: 515 SAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRL 574
S G Q L + +R I FKP+++W + V +K +DT S F R
Sbjct: 234 SYGPCQFPTLGFVVERYFRIVNFKPEDFWHLSVVHEK-----MDTSSGKMIPVTFSWCR- 287
Query: 575 NQLSIGSHTEAKDIEQK-INSANFQVIK-NSKRSMVRKNPTPYITSTLQQDAANKLNFSA 632
N+L +T A + +K +++ V+ SK S R P P T LQ+ A+ KL S+
Sbjct: 288 NRLF--DYTAAFILYEKCLDNTEATVVDVTSKESRYR--PVPLTTIELQKAASKKLRISS 343
Query: 633 TYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFER-----YGSHH 687
TM+ A++LY GLI+Y RT+ S +A +++ LI + +G++
Sbjct: 344 VQTMQYAEELY---------TKGLISYPRTET--DSFQAGTDLKGLIGNQASNPEWGAYA 392
Query: 688 AP--EEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQ 745
+ Y K KN +H I PT LSG L K+Y I R +AC
Sbjct: 393 SRLINNNQFVYPKSGKNNDNSHPPIHPTSSA---TGLSGNLK----KIYDFITRRFLACC 445
Query: 746 MQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAF 805
+ + V I E F + + V LG+ Y ++ +R
Sbjct: 446 SEESVFANTTVTIDIQGER--FSETGTMVLKLGYLEVYPFDKRNDKLIPTYQKGERFTPK 503
Query: 806 AI-LNSLKTGDPLYLGEVEL 824
I L T P Y+ E EL
Sbjct: 504 RIDLTKGTTVAPHYITEAEL 523
Score = 67 (28.6 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 31/111 (27%), Positives = 49/111 (44%)
Query: 403 VPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHE--NITVARV 460
VPS K+++ + A+ LIL D DREGE IA+ ++E+ + E + +
Sbjct: 92 VPSDKEPLKKTLEREIKKADILILWLDCDREGENIAFEVLEVCKNAKKKFEFYRAHFSAI 151
Query: 461 VFHEITEA---------SIKVALQAAREIDANLVQAYLARRALDYLIGFNI 502
+ EI A +A+ EID + A+ + L YL F I
Sbjct: 152 IPREIDRACKNLAKPNEKDSIAVDTRMEIDLRIGAAFTRFQTL-YLKKFKI 201
>CGD|CAL0003329 [details] [associations]
symbol:orf19.5934 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0031422 "RecQ helicase-Topo III
complex" evidence=IEA] [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0043007 "maintenance of rDNA"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
[GO:0007004 "telomere maintenance via telomerase" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0007064 "mitotic sister chromatid cohesion" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
Pfam:PF01131 PRINTS:PR00417 SMART:SM00436 SMART:SM00437
CGD:CAL0003329 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
EMBL:AACQ01000003 EMBL:AACQ01000004 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165
Gene3D:1.10.290.10 RefSeq:XP_722999.1 RefSeq:XP_723146.1
STRING:Q5ANG9 GeneID:3635251 GeneID:3635329 KEGG:cal:CaO19.13355
KEGG:cal:CaO19.5934 Uniprot:Q5ANG9
Length = 629
Score = 151 (58.2 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 98/422 (23%), Positives = 167/422 (39%)
Query: 421 AENLILASDPDREGEAIAWHIVEMLQQQDA-LHENITVARVVFHEITEASIKVALQAARE 479
A+ L++ +D DREGE I + I+ ++ + L N + R F + I A +
Sbjct: 106 ADKLMIWTDCDREGEYIGFEIMNAARKYNRNLGLN-NIWRARFSHLERNHIIRAAKNPVN 164
Query: 480 IDANLVQAYLARRALDYLIGFNISPLLWRKL--PGC------QSAGRVQSAALSLICDRE 531
+D + V A R +D +G + + LL +L G S G Q L + DR
Sbjct: 165 LDMSAVSAVSCRMEIDLRVGTSFTRLLTDQLRQKGIIEKNELASYGTCQFPTLGFVVDRY 224
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
+ F P+ +W +E ++ ++ + F++ HF K + ++ +
Sbjct: 225 KRVKSFTPEPFWYIE--IETRKENKKTIFNWVRG--HFFDKMYVVMLYDRCCKSGEF--- 277
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I++ ++ R P P T LQ+D A SA + A++LY
Sbjct: 278 ---GTISKIESKRKPNFR--PFPLTTVELQKDCARFFKMSAKTALAAAERLYN------- 325
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIF-----ERYGSHHAP--EEGPRKYFKKVKNAQ 704
G ++Y RT+ + E + +SL+ R+GS+ EG + +
Sbjct: 326 --LGYLSYPRTETDRFAKET--DFKSLLEVHKQDPRWGSYTTKLLNEGFETP-RSGSHDD 380
Query: 705 EAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES 764
+AH I P L + LDE K+Y + R +AC + A Q V + DE
Sbjct: 381 KAHPPIHPIKYVSLDTL--NTLDEK--KVYEYVVRRFIACCSKDAVGTQTVVTLKWGDE- 435
Query: 765 IVFRSSCSRVEFLGFQAAY--EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
F +S V + Y + ++ K E + IL KT P ++ E
Sbjct: 436 -FFTASGLMVHEKNYLEVYTYKKWESSKQLPKFTEGEQVKLSSGILKDGKTSPPNHMTEP 494
Query: 823 EL 824
EL
Sbjct: 495 EL 496
>SGD|S000004224 [details] [associations]
symbol:TOP3 "DNA Topoisomerase III" species:4932
"Saccharomyces cerevisiae" [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0031422
"RecQ helicase-Topo III complex" evidence=IDA;IPI] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IGI;IMP] [GO:0007004 "telomere maintenance
via telomerase" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA;IDA]
[GO:0000018 "regulation of DNA recombination" evidence=IMP]
[GO:0007064 "mitotic sister chromatid cohesion" evidence=IMP]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 SGD:S000004224 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 EMBL:BK006945
EMBL:U19027 GO:GO:0007131 GO:GO:0007004 GO:GO:0007064 GO:GO:0000018
GO:GO:0006265 PROSITE:PS50880 GO:GO:0031422 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 Gene3D:1.10.290.10
HOGENOM:HOG000184377 OrthoDB:EOG4KWP2D EMBL:M24939 PIR:A33169
RefSeq:NP_013335.1 ProteinModelPortal:P13099 DIP:DIP-2912N
IntAct:P13099 MINT:MINT-442624 STRING:P13099 PaxDb:P13099
PeptideAtlas:P13099 EnsemblFungi:YLR234W GeneID:850935
KEGG:sce:YLR234W CYGD:YLR234w OMA:CCSEDAK NextBio:967378
Genevestigator:P13099 GermOnline:YLR234W Uniprot:P13099
Length = 656
Score = 116 (45.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 63/269 (23%), Positives = 111/269 (41%)
Query: 413 SIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKV 472
+IK A+ L++ +D DREGE I W I + ++ + L +N V R VF + I
Sbjct: 104 NIKREARNADYLMIWTDCDREGEYIGWEIWQEAKRGNRLIQNDQVYRAVFSHLERQHILN 163
Query: 473 ALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGC--QSAGRVQSAALSLICDR 530
A + +D V A R +D G + LL L A + A ++
Sbjct: 164 AARNPSRLDMKSVHAVGTRIEIDLRAGVTFTRLLTETLRNKLRNQATMTKDGAKHRGGNK 223
Query: 531 -EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD-- 587
+ ++ + ++ T+ V+D+ E + F P + Q N+ + G+ T D
Sbjct: 224 NDSQVVSYGTCQFPTLGFVVDRFER--IRNF-VPEEFWYIQLVVENKDNGGTTTFQWDRG 280
Query: 588 -IEQKINSANF------------QVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATY 634
+ +++ F QV+ + + P P T LQ++ A L +A
Sbjct: 281 HLFDRLSVLTFYETCIETAGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQ 340
Query: 635 TMKLAQKLYEGVQLPDGTAAGLITYMRTD 663
++ A+KLY+ G I+Y RT+
Sbjct: 341 SLDAAEKLYQ---------KGFISYPRTE 360
Score = 85 (35.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 34/124 (27%), Positives = 53/124 (42%)
Query: 819 LGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTV----KSRI 874
+ + E+K T PP +E L+ ++ GIG +T A + +Q RNYV K
Sbjct: 515 IAKAEMKAGTTAPPKPMTESELILLMDTNGIGTDATIAEHIDKIQVRNYVRSEKVGKETY 574
Query: 875 LYPEFRGRMVSAFLSHYFSEV-TDYSFTA-----DMETELDNVSAGLTEWKGLLVDYWSR 928
L P G VS L H F + + SF +ME +L + G ++ D +
Sbjct: 575 LQPTTLG--VS--LVHGFEAIGLEDSFAKPFQRREMEQDLKKICEGHASKTDVVKDIVEK 630
Query: 929 FSSY 932
+ Y
Sbjct: 631 YRKY 634
>UNIPROTKB|H7BZN5 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0006265 EMBL:AC127537 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 HGNC:HGNC:11992 ProteinModelPortal:H7BZN5
Ensembl:ENST00000412083 Uniprot:H7BZN5
Length = 384
Score = 142 (55.0 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 68/263 (25%), Positives = 113/263 (42%)
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+++ + L++ +D DREGE I + I+ + + A+ N+ V R F EIT +++
Sbjct: 106 KTLERETRQCQALVIWTDCDREGENIGFEIIHVCK---AVKPNLQVLRARFSEITPHAVR 162
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPL----LWRKLPGCQ-----SAGRVQSA 522
A + E D + A R+ LD IG + L R P S G Q
Sbjct: 163 TACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFP 222
Query: 523 ALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAH--LTHFQSKRLNQLSIG 580
L + +R I F P+ + ++ D K+ + F++ H H L QL +
Sbjct: 223 TLGFVVERFKAIQAFVPEIFHRIKVTHDHKDG--IVEFNWKRHRLFNHTACLVLYQLCV- 279
Query: 581 SHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQ 640
E + A +++ +S R P T L++ A+ KL +A TM++A+
Sbjct: 280 --------EDPM--ATVVEVRSKPKSKWR--PQALDTVELEKLASRKLRINAKETMRIAE 327
Query: 641 KLYEGVQLPDGTAAGLITYMRTD 663
KLY G I+Y RT+
Sbjct: 328 KLY---------TQGYISYPRTE 341
>FB|FBgn0026015 [details] [associations]
symbol:Top3beta "Topoisomerase 3beta" species:7227
"Drosophila melanogaster" [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISS;NAS] [GO:0003916 "DNA topoisomerase
activity" evidence=IDA;NAS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=IDA] [GO:0000737 "DNA catabolic process,
endonucleolytic" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:AE014298 GO:GO:0004520
GO:GO:0000737 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
GO:GO:0003916 GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 Gene3D:1.10.290.10
EMBL:AF099909 EMBL:BT016116 RefSeq:NP_511059.2 UniGene:Dm.2946
ProteinModelPortal:O96651 DIP:DIP-22155N STRING:O96651 PaxDb:O96651
PRIDE:O96651 EnsemblMetazoa:FBtr0070930 GeneID:31565
KEGG:dme:Dmel_CG3458 CTD:31565 FlyBase:FBgn0026015
InParanoid:O96651 OMA:PPFVQGT OrthoDB:EOG4QRFJZ PhylomeDB:O96651
GenomeRNAi:31565 NextBio:774220 Bgee:O96651 GermOnline:CG3458
Uniprot:O96651
Length = 875
Score = 111 (44.1 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 38/144 (26%), Positives = 66/144 (45%)
Query: 420 GAENLILASDPDREGEAIAWHIVEMLQQ--QDALHENITVARVVFHEITEASIKVALQAA 477
G + L+L D D+EGE I + +++ ++ + + +T R F ITE IK A++
Sbjct: 108 GCDYLVLWLDCDKEGENICFEVMDAVKHVINNVYSDQVTY-RAHFSAITEKDIKKAMETL 166
Query: 478 REIDANLVQAYLARRALDYLIG--FN-ISPLLWRKLPG-----CQSAGRVQSAALSLICD 529
+ N ++ AR+ LD IG F ++ G S G Q+ L
Sbjct: 167 GHPNENEAKSVDARQELDLRIGCAFTRFQTKFFQDRYGDLDSSLISYGPCQTPTLGFCVK 226
Query: 530 REMEIDEFKPQEYWTVEAVLDKKE 553
R +I FKP+ +W ++ + + E
Sbjct: 227 RHDDIQTFKPESFWHLQLLAGQPE 250
Score = 87 (35.7 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 26/99 (26%), Positives = 47/99 (47%)
Query: 814 GDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS- 872
G + + +V L + T PP +E L+ +EE GIG ++ + + RNYV +++
Sbjct: 468 GTQVAINDVRLIESQTGPPDYLTESELITLMEEHGIGTDASIPVHINNICQRNYVHIENG 527
Query: 873 RILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNV 911
R L P G + L H + ++ M TE++ +
Sbjct: 528 RKLMPTTLGIV----LVHGYQKIDPELVLPTMRTEVERM 562
>UNIPROTKB|H0Y6W0 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00437 GO:GO:0005694 GO:GO:0006265
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012
HGNC:HGNC:11993 ProteinModelPortal:H0Y6W0 Ensembl:ENST00000457270
Uniprot:H0Y6W0
Length = 525
Score = 111 (44.1 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 31/116 (26%), Positives = 61/116 (52%)
Query: 808 LNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNY 867
L + + GD +GEV++ + T PP +E L+ +E+ GIG ++ + + RNY
Sbjct: 262 LPTCQRGDAFPVGEVKMLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNY 321
Query: 868 VTVKS-RILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLL 922
VTV+S R L P G ++ +E+ + + +E +L+ ++ G +++ +L
Sbjct: 322 VTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVL 377
Score = 81 (33.6 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 29/130 (22%), Positives = 55/130 (42%)
Query: 515 SAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRL 574
S G Q+ L +R +I FKP+ YW ++A ++ + SL L + R+
Sbjct: 8 SFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSL--------LLDWDRVRV 59
Query: 575 NQLSIGS-HTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSAT 633
I +E++ QV S++ ++ P T + + A++ L
Sbjct: 60 FDREIAQMFLNMTKLEKEA-----QVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQ 114
Query: 634 YTMKLAQKLY 643
+ M+ A++LY
Sbjct: 115 HAMQTAERLY 124
>UNIPROTKB|B4DSJ0 [details] [associations]
symbol:TOP3A "cDNA FLJ56242, highly similar to DNA
topoisomerase 3-alpha (EC 5.99.1.2)" species:9606 "Homo sapiens"
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA topological
change" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR010666
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 SMART:SM00343 GO:GO:0005694
GO:GO:0008270 GO:GO:0006265 EMBL:AC127537 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 UniGene:Hs.592115 HGNC:HGNC:11992 EMBL:AK299764
IPI:IPI01012294 SMR:B4DSJ0 STRING:B4DSJ0 Ensembl:ENST00000540524
HOVERGEN:HBG103257 Uniprot:B4DSJ0
Length = 531
Score = 135 (52.6 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 48/206 (23%), Positives = 92/206 (44%)
Query: 802 HEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKV 861
H + IL + G VE+ T PP +E L+ +E+ GIG +T+A ++
Sbjct: 15 HWSDKILPVYEQGSHFQPSTVEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIET 74
Query: 862 LQDRNYV--TVKSRILYPEFRGR-MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEW 918
++ R YV T R L P G +V + S + E++ A++E +L + G +
Sbjct: 75 IKARMYVGLTPDKRFL-PGHLGMGLVEGYDSMGY-EMSKPDLRAELEADLKLICDGKKDK 132
Query: 919 KGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFG--------DSLFASLPNKDRSCPVC 970
+L ++ A + ++++ L + FG + ++ ++P R CP C
Sbjct: 133 FVVLRQQVQKYKQVFIEAVA-KAKKLDEALAQYFGNGTELAQQEDIYPAMPEPIRKCPQC 191
Query: 971 GEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ ++ K + G G+++ C P C
Sbjct: 192 NKD-MVLKTKKNG-GFYLSCMGFPEC 215
>UNIPROTKB|C9JEI7 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR013497 InterPro:IPR013824
Pfam:PF01131 SMART:SM00436 Pfam:PF01751 InterPro:IPR006171
GO:GO:0007059 GO:GO:0000793 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012 HGNC:HGNC:11993
HOGENOM:HOG000184378 IPI:IPI01014062 ProteinModelPortal:C9JEI7
STRING:C9JEI7 Ensembl:ENST00000424393 ArrayExpress:C9JEI7
Bgee:C9JEI7 Uniprot:C9JEI7
Length = 246
Score = 125 (49.1 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 42/147 (28%), Positives = 67/147 (45%)
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVE-MLQQQDALHENI-TVARVVFHEITEA 468
+K ++V G + ++L D D+EGE I + +++ +L + H TV R F IT+
Sbjct: 99 VKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDT 158
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQ--------SAGRVQ 520
I A+ E D N + AR+ LD IG + + G S G Q
Sbjct: 159 DICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSLISFGPCQ 218
Query: 521 SAALSLICDREMEIDEFKPQEYWTVEA 547
+ L +R +I FKP+ YW ++A
Sbjct: 219 TPTLGFCVERHDKIQSFKPETYWVLQA 245
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1158 1075 0.00085 123 3 11 22 0.41 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 58
No. of states in DFA: 633 (67 KB)
Total size of DFA: 489 KB (2228 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 92.74u 0.10s 92.84t Elapsed: 00:00:04
Total cpu time: 92.76u 0.10s 92.86t Elapsed: 00:00:04
Start: Fri May 10 07:22:58 2013 End: Fri May 10 07:23:02 2013