BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001100
(1158 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359476014|ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
Length = 1185
Score = 1472 bits (3812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 760/1156 (65%), Positives = 882/1156 (76%), Gaps = 44/1156 (3%)
Query: 42 HRAFWNHQGIQLPPYPLIG-------SGLRFRKGRVTSAITISYPK-----VACDFFLFS 89
+R F N+ LP L G S + FRK + + + PK V +F +F
Sbjct: 35 YRGFQNYPATSLPCTRLNGGDKFGNFSQINFRKIGIPALVNNIQPKILRLNVNRNFHIFG 94
Query: 90 GRTDCSKGALSIHSHLK---PRS-SFCYMPLDNGIRFSSLNCEPFSKRCFSQLSRGKIGI 145
TD S+ A+ + S L+ P + + Y LD GIRFSS + +KR FSQ+ R K
Sbjct: 95 SLTDSSRFAVPVQSQLRLGFPNAVTPIYGTLDIGIRFSSPYYKALAKRPFSQVPRVKNKG 154
Query: 146 EKIGVSDARSGSGGGKSWFNKHRKR-----------NNAVSARGKSNATSSSISVSEDVN 194
+ +G+ D + + FNKHRK N AV A G SN + S S +
Sbjct: 155 DNLGIRDGTAENTSLFKPFNKHRKWEKSLTAHRRSFNGAVRAAG-SNQPTKVSSSSSRRS 213
Query: 195 AVN-----STSEQLVGDGVEGAKLGSS-----VSNTKQNSKPRARQQQQSRSKKKKEQLS 244
A+ + EQLV +G + A L S VSN + SK +Q++QSR+KK KEQ++
Sbjct: 214 ALGDGDMMTQQEQLVDNGRKDADLSPSISTSPVSNNNRGSKATEKQRKQSRTKKNKEQVT 273
Query: 245 ATVASEQASVGKSCKSVSQAKSSKCKSEQCADLTSEKTSPGNTLEQPLASSALTKQQSKK 304
+T AS + KS KS S+A S + + S+ S GN + L SS TK QSKK
Sbjct: 274 STDASSDVAQKKSTKSSSEANKSNITKKSQSPQASKNNSTGNKPVEALDSSVSTKSQSKK 333
Query: 305 NSGNCGRKKKSAKATKASLQRQTSEEM-VIVPRGQNTQNPLYPPSGKSVVVVESVTKAKV 363
+G+ +K KS K S ++QT M I Q LYP SGKSVVVVESVTKAKV
Sbjct: 334 ATGSSNKKGKSPKVANESPKKQTVHTMGKIKSLEQRPLKKLYPSSGKSVVVVESVTKAKV 393
Query: 364 IQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAEN 423
IQGYLGDMYEVLPSYGHVRDLA RSGSVRPDDDFSMVWEVPSAAWTHLKSIKVAL GAEN
Sbjct: 394 IQGYLGDMYEVLPSYGHVRDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALGGAEN 453
Query: 424 LILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDAN 483
LILASDPDREGEAIAWHI+EML QQDALH+++TVARVVFHEITE+SIK AL A REID N
Sbjct: 454 LILASDPDREGEAIAWHIIEMLLQQDALHKDLTVARVVFHEITESSIKSALDAPREIDVN 513
Query: 484 LVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYW 543
LV AYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAAL+LICDREMEIDEFKPQEYW
Sbjct: 514 LVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALALICDREMEIDEFKPQEYW 573
Query: 544 TVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNS 603
TVE ++K+ S+++ FP++LTHF SK+LNQ SI SHTEAK IEQ+INS F+VI S
Sbjct: 574 TVEVEFNRKQGSSMNSKFFPSYLTHFDSKKLNQFSISSHTEAKAIEQEINSLEFKVI-GS 632
Query: 604 KRSMVRKN-PTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRT 662
KR+ +RKN PTPYITSTLQQDAANKL+FSA YTMKLAQ+LYEGVQL DG AAGLITYMRT
Sbjct: 633 KRNKMRKNPPTPYITSTLQQDAANKLHFSAMYTMKLAQRLYEGVQLSDGKAAGLITYMRT 692
Query: 663 DGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAML 722
DGLH+SDEAAK+IRSL+ ERYGS+ A +G RKYFKKVKNAQEAHEAIRPTDI+RLP+ML
Sbjct: 693 DGLHVSDEAAKDIRSLVAERYGSNLA-SDGVRKYFKKVKNAQEAHEAIRPTDIQRLPSML 751
Query: 723 SGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAA 782
+G+LDED LKLY+LIWSRTMACQM+PAT+ QIQVDIGNA+ES+VFRS+CS VEF G+QA
Sbjct: 752 AGVLDEDSLKLYTLIWSRTMACQMEPATIDQIQVDIGNANESVVFRSTCSGVEFFGYQAV 811
Query: 783 YEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVK 842
Y+DV+A AIR ENE N+R E F L+SLK GDPLYL +EL+QHHT PP+RYSEG+LVK
Sbjct: 812 YKDVEAKAIRVDENEGNERGEVFKALSSLKAGDPLYLSLLELEQHHTLPPSRYSEGALVK 871
Query: 843 KLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTA 902
KLEELGIGRPSTYA T+KVLQDRNYVTVK+R+LYPEFRGRMVSAFLSH+FSEVTDYSFTA
Sbjct: 872 KLEELGIGRPSTYAITMKVLQDRNYVTVKNRVLYPEFRGRMVSAFLSHHFSEVTDYSFTA 931
Query: 903 DMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPN 962
DMETELDNVSAGLTEWKGLL DYW+RFS YC ++HIHQVEKMLEK FGD LF+ LP+
Sbjct: 932 DMETELDNVSAGLTEWKGLLKDYWTRFSMYCNRVSNVHIHQVEKMLEKKFGDFLFSFLPD 991
Query: 963 KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEP 1022
K R+CP C EGTLIFKVSRFG+GYFIGC+QHP+C YIAK L GDDDEE Q T +EP
Sbjct: 992 KSRTCPSCMEGTLIFKVSRFGSGYFIGCDQHPKCKYIAKMLDGDDDEEVASQDKT-FEEP 1050
Query: 1023 KLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRY 1082
K +G P S EK+LLK+GPYGFY+QLGEDR GYLPKRASVSHIKDV SITLEDALELLRY
Sbjct: 1051 KALGLSPGSSEKILLKNGPYGFYLQLGEDRKGYLPKRASVSHIKDVGSITLEDALELLRY 1110
Query: 1083 PVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKDVRRC 1142
PV LGNHP D P++L+LA+ GFS+RHRRTIA VPKN+KPND+TLEKAL+ L GKDV++
Sbjct: 1111 PVTLGNHPNDDHPVVLKLAKNGFSIRHRRTIAPVPKNIKPNDITLEKALKLLLGKDVKQS 1170
Query: 1143 GRPKGKPKREEALEAM 1158
GRPK K K++E EAM
Sbjct: 1171 GRPKNK-KKQEVYEAM 1185
>gi|356554445|ref|XP_003545557.1| PREDICTED: DNA topoisomerase 1-like [Glycine max]
Length = 1197
Score = 1317 bits (3409), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 628/828 (75%), Positives = 705/828 (85%), Gaps = 3/828 (0%)
Query: 333 IVPRGQNTQNPLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVR 392
+ P T PLYPP+ KSVVVVESVTKAKVI+ YLGDMYEVLPSYGHVRDLAARSGSVR
Sbjct: 371 VKPPWNFTYKPLYPPTRKSVVVVESVTKAKVIKRYLGDMYEVLPSYGHVRDLAARSGSVR 430
Query: 393 PDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALH 452
PDDDFSMVWEVP AWTHLKSIKVALS AENLILASDPDREGEAIAWHI+EMLQQQ ALH
Sbjct: 431 PDDDFSMVWEVPPPAWTHLKSIKVALSRAENLILASDPDREGEAIAWHIIEMLQQQGALH 490
Query: 453 ENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPG 512
+NI++ARVVFHEITE SIK ALQ REID NLVQAYLARRALDYLIGFNISPLLWRKLPG
Sbjct: 491 DNISLARVVFHEITEKSIKGALQTPREIDVNLVQAYLARRALDYLIGFNISPLLWRKLPG 550
Query: 513 CQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSK 572
CQSAGRVQSAALSLICDREMEIDEFKP+EYWTVE + KKE S +FPAHLTHF SK
Sbjct: 551 CQSAGRVQSAALSLICDREMEIDEFKPKEYWTVEVQMKKKELRSNKNLTFPAHLTHFDSK 610
Query: 573 RLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSA 632
+LN+ SI S TEA+DI INSA+F V+ K R PTPYITSTLQQDAANKL+F+A
Sbjct: 611 KLNKFSITSDTEARDIRSNINSADFHVVSLKKNKSRRNPPTPYITSTLQQDAANKLHFTA 670
Query: 633 TYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEG 692
++TMKLAQKLYEGV+L D A GLITY+RTDGLHISDEA IRSLI ERYG +
Sbjct: 671 SHTMKLAQKLYEGVELSDSVAVGLITYIRTDGLHISDEAVASIRSLIIERYGQDFVSQSA 730
Query: 693 PRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVG 752
P KY+KKVKNAQEAHEAIRPTDIR+LP+MLS +LDE+ LKLY+LIWSRT++CQM+PA
Sbjct: 731 P-KYYKKVKNAQEAHEAIRPTDIRKLPSMLSAILDEESLKLYTLIWSRTVSCQMEPAVFE 789
Query: 753 QIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLK 812
QIQ+DIGN DESI+ +SS SRVEF G++A + D+ + A++ K ++E+ + F +LNSLK
Sbjct: 790 QIQLDIGNLDESIILQSSISRVEFPGYRAVFTDIVSEAVQDKGSDESSHDQTFGVLNSLK 849
Query: 813 TGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS 872
TGD L++ + E QHHTQPP RYSE SLVKKLEELGIGRPSTYAST+KVLQDRNYVTVKS
Sbjct: 850 TGDSLHVVQTEPNQHHTQPPPRYSEASLVKKLEELGIGRPSTYASTIKVLQDRNYVTVKS 909
Query: 873 RILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSY 932
R+L PEFRGRMVSAFLS++FSEVTDYSFTADMETELDNVSAGLTEWKGLL DYW+RF SY
Sbjct: 910 RVLSPEFRGRMVSAFLSNHFSEVTDYSFTADMETELDNVSAGLTEWKGLLRDYWTRFKSY 969
Query: 933 CTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQ 992
C ++HIHQVEKMLEK FGD LFASLP++ R CP C EGTLIFKVSRFGAGYFIGC+Q
Sbjct: 970 CERTSNVHIHQVEKMLEKKFGDYLFASLPDQSRVCPSCMEGTLIFKVSRFGAGYFIGCDQ 1029
Query: 993 HPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDR 1052
HPRC YIAKTLYG ++EED Q NT ++EPKL+G S EKVLLKSGPYG YVQLGEDR
Sbjct: 1030 HPRCKYIAKTLYGTEEEEDASQPNTRIEEPKLLGVTSGSNEKVLLKSGPYGVYVQLGEDR 1089
Query: 1053 TGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRT 1112
GY+P+RASVSHIKDVDSITL+DALE+L+YP+ LGNHPKDGQP++LRLARAGF VRHRRT
Sbjct: 1090 KGYIPRRASVSHIKDVDSITLKDALEVLQYPLTLGNHPKDGQPVILRLARAGFCVRHRRT 1149
Query: 1113 IASVPKNMKPNDVTLEKALEFLSGKDVRRCGRP-KGKPKRE-EALEAM 1158
IAS+PKN+KP+DVTLEKALE+LSG DVRR GRP KGK K E E +EA
Sbjct: 1150 IASIPKNVKPSDVTLEKALEYLSGDDVRRSGRPKKGKSKVEVEVIEAF 1197
>gi|255574175|ref|XP_002528003.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
gi|223532629|gb|EEF34415.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
Length = 1071
Score = 1300 bits (3363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 663/970 (68%), Positives = 750/970 (77%), Gaps = 59/970 (6%)
Query: 194 NAVNSTSEQLVGDGVEGAKLGSSVSNTKQNSKPR---ARQQQQSRSKKKKEQLSATVASE 250
N N T EQ GD L S+ T NSKP R ++ S++ KK+Q S +V E
Sbjct: 156 NDANPT-EQSSGD----VNLDSTAPVTTPNSKPTPTTTRHKKHSKTNSKKQQSSTSV--E 208
Query: 251 QASVGKSCKSVSQAKSSKCKSEQCADLTSEKTSPGNTLEQPLASSALTKQQSKKNSGNCG 310
+A+ K+ S K + L +SA TK Q K +
Sbjct: 209 EAAQAKTSSSTKTKTKPK---------------------ELLDASASTKPQPNKKTRKPT 247
Query: 311 RKKKSAKATKASLQRQTSEEMV--IVPRGQNTQNPLYPPSGKSVVVVESVTKAKVIQGYL 368
K K+ K K S +Q + + P Q + PLYPP+ KSVVVVESVTKAKVIQGYL
Sbjct: 248 GKPKAIKTVKVSPDKQQQHKPMHKSKPFRQGSLKPLYPPTAKSVVVVESVTKAKVIQGYL 307
Query: 369 GDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILAS 428
G M+EVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPS AWTHLK+IKVAL+GAENL+LAS
Sbjct: 308 GPMFEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSPAWTHLKTIKVALNGAENLVLAS 367
Query: 429 DPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAY 488
DPDREGEAIAWHI+EMLQQQDALH+ +TVARVVFHEITE SIK ALQA REID NLV AY
Sbjct: 368 DPDREGEAIAWHIIEMLQQQDALHQGVTVARVVFHEITEQSIKNALQAPREIDLNLVHAY 427
Query: 489 LARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAV 548
LARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEF PQEYWT++
Sbjct: 428 LARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFTPQEYWTIDVE 487
Query: 549 LDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMV 608
L E+ S S A LTHF +LNQLS+ SHTEA+DIEQKIN A+F V + M
Sbjct: 488 LYIMETGS----SVNARLTHFDFNKLNQLSVRSHTEARDIEQKINVASFLVAGAKESKMR 543
Query: 609 RKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHIS 668
R PTPYITSTLQQDAANKL+FS+ YTMKLAQKLYEGVQL DG GLITY+RTDGLHIS
Sbjct: 544 RNPPTPYITSTLQQDAANKLHFSSMYTMKLAQKLYEGVQLSDGKTTGLITYIRTDGLHIS 603
Query: 669 DEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDE 728
EA KEI SL+ ERYG A + PRKYFKKVKNAQEAHEA+RPT++R LP+ML+ +LDE
Sbjct: 604 GEAVKEIHSLVIERYGQDFA-SDSPRKYFKKVKNAQEAHEAVRPTNVRMLPSMLANVLDE 662
Query: 729 DCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDA 788
D LKLY+LIWSRT+ACQM+PAT+ QIQVDIGNA+ SI RS+CS V FLG+Q YED +A
Sbjct: 663 DSLKLYTLIWSRTVACQMEPATIEQIQVDIGNANGSITLRSACSGVGFLGYQIVYEDKEA 722
Query: 789 GAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELG 848
GAI+ KE+E ND +EAF IL SLK GDP L EV+LKQH TQPP RYSEG+LVKKLEELG
Sbjct: 723 GAIKNKESEVNDHNEAFGILKSLKPGDPFNLSEVKLKQHFTQPPPRYSEGTLVKKLEELG 782
Query: 849 IGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETEL 908
IGRPSTYASTLKVLQDRNYVTVK+R+L PEFRGRMVSAFLS +F+EVTDYSFTADMETEL
Sbjct: 783 IGRPSTYASTLKVLQDRNYVTVKNRVLNPEFRGRMVSAFLSQHFTEVTDYSFTADMETEL 842
Query: 909 DNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCP 968
DNVSAGLTEWKGLL DYW+RFSSYC+ A+S+HIHQVEKMLEKTFGD LF SLP+ R+CP
Sbjct: 843 DNVSAGLTEWKGLLRDYWTRFSSYCSHAESVHIHQVEKMLEKTFGDFLFGSLPDDSRTCP 902
Query: 969 VCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHH 1028
C EGTLIFK Y + +YGDD++E+T Q N+ V+EPKL+G H
Sbjct: 903 SCLEGTLIFK-------YMLD-------------IYGDDEDEETPQNNS-VEEPKLLGVH 941
Query: 1029 PASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGN 1088
P S EKVLLK+GPYGFY+QLGEDR GY PKRASVSHIKDVD+ITLEDALELLRYPV LGN
Sbjct: 942 PVSTEKVLLKNGPYGFYLQLGEDRKGYTPKRASVSHIKDVDNITLEDALELLRYPVTLGN 1001
Query: 1089 HPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKDVRRCGRPKGK 1148
HPKDG PI+L+LA+ GF+VRHRRTIASVPKNMKP++V+LEKALE LSG DVRR GRPK K
Sbjct: 1002 HPKDGHPIILKLAKVGFAVRHRRTIASVPKNMKPDNVSLEKALELLSGDDVRRSGRPKRK 1061
Query: 1149 PKREEALEAM 1158
PK EE +EAM
Sbjct: 1062 PKVEEVVEAM 1071
>gi|356565868|ref|XP_003551158.1| PREDICTED: DNA topoisomerase 1-like [Glycine max]
Length = 1070
Score = 1293 bits (3345), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 633/869 (72%), Positives = 716/869 (82%), Gaps = 19/869 (2%)
Query: 286 NTLEQPLASSALTKQQSKKNSGNCGRKKKSAKATKASLQRQTSEEMVIVPRGQNTQNPLY 345
+ +E+ +SA K + KK +GN +SL + P T PLY
Sbjct: 215 SAIEEITENSASAKDKVKKKNGN------------SSLIEEAK------PLWNFTYKPLY 256
Query: 346 PPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPS 405
PP+GKSVVVVESVTKAKVI+ YLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPS
Sbjct: 257 PPTGKSVVVVESVTKAKVIKRYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPS 316
Query: 406 AAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEI 465
AWTHLKSIKVALSGAENLILASDPDREGEAIAWHI+EMLQQQ ALH+NI++ARVVFHEI
Sbjct: 317 PAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIIEMLQQQGALHDNISLARVVFHEI 376
Query: 466 TEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALS 525
TE SIK +LQ REID NLVQAYLARRALDYLIGF+ISPLLWRKLPGCQSAGRVQSAALS
Sbjct: 377 TEKSIKGSLQTPREIDINLVQAYLARRALDYLIGFSISPLLWRKLPGCQSAGRVQSAALS 436
Query: 526 LICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEA 585
LICDREMEIDEFKP+EYW VE L KKE S +FPAHLTHF SK+LNQ SI S TEA
Sbjct: 437 LICDREMEIDEFKPKEYWIVEVQLKKKELRSNKNLTFPAHLTHFDSKKLNQFSITSDTEA 496
Query: 586 KDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
+DI+ INSA+F V+ K R PTPYITSTLQQDAANKL+F+A++TMKLAQKLYEG
Sbjct: 497 RDIQSTINSADFHVVSLKKSKSRRNPPTPYITSTLQQDAANKLHFTASHTMKLAQKLYEG 556
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
V+L DG A GLITY+RTDGLHISDE IRSLI ERYG + P KY+KKVKNAQE
Sbjct: 557 VELSDGIAVGLITYIRTDGLHISDEVVASIRSLIIERYGQDFVSQSAP-KYYKKVKNAQE 615
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEAIRPTDI +LP+MLSG+LD + LKLY+LIWSRT++CQM PA QIQ++IGN D+SI
Sbjct: 616 AHEAIRPTDICKLPSMLSGILDGESLKLYTLIWSRTVSCQMGPAVFEQIQLNIGNPDKSI 675
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
+ RSS SRVEF G++A + D+ A++ K+++E R + F +LNSLKTGDPL++ + E
Sbjct: 676 ILRSSSSRVEFPGYRAVFTDIVTEAVQDKDSDEFSRDQTFGVLNSLKTGDPLHVVQTEPN 735
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QHHTQPP RYSE SLVKKLEELGIGRPSTYAST+KVLQDRNYVTVKSR+L PEFRG MVS
Sbjct: 736 QHHTQPPPRYSEASLVKKLEELGIGRPSTYASTIKVLQDRNYVTVKSRVLSPEFRGCMVS 795
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
AFLSH+FSEV DY FTADMETELDNVS GLTEWKGLL DYW+RF SYC ++HIHQVE
Sbjct: 796 AFLSHHFSEVMDYGFTADMETELDNVSGGLTEWKGLLRDYWTRFKSYCERTSNVHIHQVE 855
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
KMLEK FGD LFASLP++ R CP C EGTLIFKVSRFGAGYFIGC+QHPRC YIAKTLYG
Sbjct: 856 KMLEKKFGDYLFASLPDQSRVCPSCMEGTLIFKVSRFGAGYFIGCDQHPRCKYIAKTLYG 915
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
++EED Q N+ V+EPKL+G S EKVLLKSGPYG YVQLGEDR GY+PKRASVSHI
Sbjct: 916 TEEEEDASQPNSRVEEPKLLGVTSGSYEKVLLKSGPYGVYVQLGEDRKGYIPKRASVSHI 975
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
KDVDSITL+DALE+L+YP+ LGNHPKDGQP++L+LARAG VRHRRT+ASVPKN+KP+DV
Sbjct: 976 KDVDSITLKDALEVLQYPLTLGNHPKDGQPVILKLARAGLCVRHRRTVASVPKNVKPSDV 1035
Query: 1126 TLEKALEFLSGKDVRRCGRPKGKPKREEA 1154
TLEKALE+LSG DVRR GRPKGK K +E
Sbjct: 1036 TLEKALEYLSGDDVRRSGRPKGKSKVQEV 1064
>gi|334187057|ref|NP_194849.3| DNA topoisomerase, type IA, core [Arabidopsis thaliana]
gi|332660478|gb|AEE85878.1| DNA topoisomerase, type IA, core [Arabidopsis thaliana]
Length = 1284
Score = 1279 bits (3309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 624/970 (64%), Positives = 761/970 (78%), Gaps = 27/970 (2%)
Query: 186 SISVSEDVNAVNSTSEQLVGDGVEG--AKLGSSVSNTKQNSKPRARQQQQSRSKKKKEQL 243
++ S + V ST E ++GDG G A+L ++ S ++ + ++ KK E
Sbjct: 313 NVLASSEAEVVTST-EPVIGDGSSGIKAELSTAASPASNGNQATTVKSKRRPKNKKVEDK 371
Query: 244 SATVAS--EQASVGKSCKSVSQAKSSKCKSEQCADLTSE--KTSPGNTLEQPLASSALTK 299
S++V E S+ +S SV + K S + + + E K P + P S++ ++
Sbjct: 372 SSSVVPVLEAVSLDESPISVPKPKHSGSGNRKSSSAKKEVAKNHPVEEPKSPAPSNSKSE 431
Query: 300 QQSKKNSGNCGRKKKSAKATKASLQRQTSEEM--VIVPRGQNTQNPLYPPSGKSVVVVES 357
QQ KS KA+KA Q+ + M I RGQN PLYPPSGKSV+VVES
Sbjct: 432 QQ----------HLKSTKASKAPKQKLVPQHMKNSIEHRGQNASKPLYPPSGKSVIVVES 481
Query: 358 VTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVA 417
+TKAK+IQGYLGDMYEVLPSYGH+RDLA RSGSVRPDDDFSMVWEVPS+AWTH+KSIKVA
Sbjct: 482 MTKAKIIQGYLGDMYEVLPSYGHIRDLATRSGSVRPDDDFSMVWEVPSSAWTHIKSIKVA 541
Query: 418 LSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAA 477
L+GAENLILASDPDREGEAIAWHI+EMLQQQ ALHE++TVARVVFHEITE++IK ALQ+
Sbjct: 542 LNGAENLILASDPDREGEAIAWHIIEMLQQQGALHESMTVARVVFHEITESAIKSALQSP 601
Query: 478 REIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEF 537
REID +LV AYLARRALDYLIGFNISPLLWRKLPGC SAGRVQSAAL+L+CDRE EID F
Sbjct: 602 REIDGDLVHAYLARRALDYLIGFNISPLLWRKLPGCPSAGRVQSAALALVCDRESEIDGF 661
Query: 538 KPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANF 597
KPQEYWTV + K+ ++ +F AHLT SKRLNQLSI S A+DIEQ+I S F
Sbjct: 662 KPQEYWTVGIKVKGKD----NSATFSAHLTSLNSKRLNQLSISSEANAQDIEQRIKSEGF 717
Query: 598 QVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGL 656
++K +K S RKNP TPYITSTLQQDAANKL+FS +TMKLAQKLYEGVQL DG +AGL
Sbjct: 718 -LVKGTKTSTTRKNPPTPYITSTLQQDAANKLHFSTAHTMKLAQKLYEGVQLSDGKSAGL 776
Query: 657 ITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIR 716
ITYMRTDGLHI+DEA K+I+SL+ ERYG + + PRKYFKKVKNAQEAHEAIRPTDIR
Sbjct: 777 ITYMRTDGLHIADEAIKDIQSLVAERYGKNFT-SDSPRKYFKKVKNAQEAHEAIRPTDIR 835
Query: 717 RLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEF 776
RLP+ ++ LLD D LKLY+LIWSR +ACQM+PA++ QIQ+DIGNA ESI+FRSSCS+VEF
Sbjct: 836 RLPSTIASLLDADSLKLYTLIWSRAVACQMEPASIAQIQLDIGNASESIIFRSSCSKVEF 895
Query: 777 LGFQAAYEDVDAGAIRYKENEEN-DRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARY 835
LG+QA YED +A AI+ +N+++ +R E F L+SLK GD L +GEVELKQHHTQ P RY
Sbjct: 896 LGYQAVYEDPEAKAIKNNDNDQSSEREETFKTLSSLKDGDLLQIGEVELKQHHTQHPPRY 955
Query: 836 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEV 895
SEGSLVKKLEELGIGRPSTYAS +VLQ R YVT+K+R+LYPEFR RMVSAFL+HYF+E+
Sbjct: 956 SEGSLVKKLEELGIGRPSTYASIFRVLQHRKYVTIKNRVLYPEFRARMVSAFLTHYFTEI 1015
Query: 896 TDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDS 955
TDYSFTADMETELDNVS G+TEWKGLL DYW+RFS+YC +++ QVEKMLEK + D
Sbjct: 1016 TDYSFTADMETELDNVSGGVTEWKGLLRDYWTRFSAYCKRVENVQRSQVEKMLEKKYEDV 1075
Query: 956 LFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQR 1015
LF+ LP R+CP C EGTL FK S+FGAGYFIGC+QHP C +IAKTLYG+D++ED +
Sbjct: 1076 LFSLLPYPSRTCPSCMEGTLSFKASKFGAGYFIGCDQHPSCKFIAKTLYGEDEDEDDPPK 1135
Query: 1016 NTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLED 1075
N V+EPKL+G HP + EKV+LK GPYG YVQLGED+ G+ PKRA+ +HIKDV+SITLE
Sbjct: 1136 NNCVEEPKLLGLHPNTSEKVILKCGPYGHYVQLGEDKKGHTPKRANAAHIKDVNSITLES 1195
Query: 1076 ALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLS 1135
ALELLRYP+ LG HP+DGQP++L+L+++GF+++HRR +A+VPKN +P +VTLE+A++ LS
Sbjct: 1196 ALELLRYPLTLGTHPEDGQPVVLKLSKSGFTIKHRRNMATVPKNTEPGEVTLERAMKLLS 1255
Query: 1136 GKDVRRCGRP 1145
GK+VR+ GRP
Sbjct: 1256 GKNVRKSGRP 1265
>gi|449511968|ref|XP_004164103.1| PREDICTED: DNA topoisomerase 1-like, partial [Cucumis sativus]
Length = 1103
Score = 1241 bits (3211), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/829 (71%), Positives = 696/829 (83%), Gaps = 16/829 (1%)
Query: 336 RGQNTQNPLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDD 395
+G+ T LYPP GKSV+VVESVTKAKVIQ YLGDM+ VLPS+GHVRDLAA+SGSVRPDD
Sbjct: 282 QGRTTFKQLYPPMGKSVMVVESVTKAKVIQNYLGDMFVVLPSHGHVRDLAAKSGSVRPDD 341
Query: 396 DFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENI 455
DFSMVWEVPSAA THLKS++V+L+GAENLILASDPDREGEAIAWHI+EML QDALHE I
Sbjct: 342 DFSMVWEVPSAALTHLKSMQVSLNGAENLILASDPDREGEAIAWHIIEMLHHQDALHEGI 401
Query: 456 TVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQS 515
++ARVVFHEITEASIK ALQ+ R IDANLVQAYLARRALDYLIGFNISPLLWRKLPGC+S
Sbjct: 402 SIARVVFHEITEASIKSALQSPRVIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCRS 461
Query: 516 AGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSL-DTFSFPAHLTHFQSKRL 574
AGRVQSAAL+LICDREMEIDEF QEYW+++ L++KES SL + F+ PAHLTHF S++L
Sbjct: 462 AGRVQSAALALICDREMEIDEFHAQEYWSIDIELNQKESCSLVEDFAVPAHLTHFDSRKL 521
Query: 575 NQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSAT 633
NQ +I S+TEAK+IE + S NFQV+ +SK++ VR+NP PYITSTLQQDAANK NFSA+
Sbjct: 522 NQFAISSNTEAKNIETALKSVNFQVL-SSKKTKVRRNPPMPYITSTLQQDAANKFNFSAS 580
Query: 634 YTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGP 693
YTM+LAQKLYEG+QL DG AAGLITY+RTDGLHISDEA K+IR+LI +RYG + PE GP
Sbjct: 581 YTMQLAQKLYEGIQLADGKAAGLITYLRTDGLHISDEAVKDIRTLIMQRYGQNFVPESGP 640
Query: 694 RKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQ 753
KYFKKVKNAQEAHEAIRPTD++RLP+ML G LDED KLYSLIW RT+ACQM+ + Q
Sbjct: 641 -KYFKKVKNAQEAHEAIRPTDVQRLPSMLVGTLDEDSHKLYSLIWLRTVACQMESSITEQ 699
Query: 754 IQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKT 813
IQ++ G +DESI+ RS+CSRV+F GFQ +ED +A A+++K++E+N R E F ILN+LK
Sbjct: 700 IQIECGPSDESIISRSTCSRVQFRGFQEVFEDPEADAVKHKDHEDNGRDELFRILNALKP 759
Query: 814 GDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSR 873
GD L L VELKQH TQPP RYSEG+LVKK+EELGIGRPSTYA+T+KVLQDR YV+VKSR
Sbjct: 760 GDQLSLAAVELKQHFTQPPPRYSEGALVKKMEELGIGRPSTYATTIKVLQDRKYVSVKSR 819
Query: 874 ILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYC 933
+L+PEFRGRMVSAFL H+FSEVTDYSFTADME ELDNVSAGLTEWKGLL DYW+RFSSY
Sbjct: 820 VLHPEFRGRMVSAFLCHHFSEVTDYSFTADMENELDNVSAGLTEWKGLLRDYWTRFSSYF 879
Query: 934 TCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQH 993
S+HIHQVEKMLEK +G +F+ LP+ R+CP C EGTL FK+SRFGAGYF+GC+QH
Sbjct: 880 ESVNSVHIHQVEKMLEKKYGSFIFSFLPDNSRTCPSCQEGTLTFKLSRFGAGYFVGCDQH 939
Query: 994 PRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT 1053
P+C YIAKT +G+D++ D ++ EPKL+G HP EK+LLK GP+G YVQLGEDR
Sbjct: 940 PKCKYIAKTSHGEDEDND-----NSLKEPKLLGLHPDLNEKILLKKGPFGLYVQLGEDRK 994
Query: 1054 GYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTI 1113
GYLPKRAS+S IKDV SITLEDA+E L YPV LGNHPKDGQP+++++AR GF+V H RT
Sbjct: 995 GYLPKRASLSQIKDVTSITLEDAVERLCYPVTLGNHPKDGQPVIIKMARVGFAVGHGRTA 1054
Query: 1114 ASVPKNMKPNDVTLEKALEFLSGKDVRRCGRP-------KGKPKREEAL 1155
ASVP+N+KPNDV L KALE LS +VRR G P K K K EE +
Sbjct: 1055 ASVPENLKPNDVDLAKALELLSSSNVRRSGLPLFPNSLSKEKQKGEEKM 1103
>gi|147787791|emb|CAN67233.1| hypothetical protein VITISV_020021 [Vitis vinifera]
Length = 1039
Score = 1231 bits (3184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 646/1008 (64%), Positives = 752/1008 (74%), Gaps = 57/1008 (5%)
Query: 42 HRAFWNHQGIQLPPYPLIGSG--------LRFRKGRVTSAITISYPKVAC-----DFFLF 88
+R F N+ LP Y + G + FRK + + + PK+ +F +F
Sbjct: 35 YRGFQNYPATSLP-YTRVNGGDKFGNFSQINFRKIGIPALVNNIQPKILRLNANRNFHIF 93
Query: 89 SGRTDCSKGALSIHSHLK---PRS-SFCYMPLDNGIRFSSLNCEPFSKRCFSQLSRGKIG 144
TD S+ A+ + S L+ P + + Y LD GIRFSS + +KR FSQ+ R K
Sbjct: 94 GSLTDSSRFAVPVQSQLRLGFPNAVTPIYGTLDIGIRFSSPYYKALAKRPFSQVPRVKNK 153
Query: 145 IEKIGVSDARSGSGGGKSWFNKHRKR-----------NNAVSARGKSNATSSSISVSEDV 193
+ +G+ D + + FNKHRK N AV A G SN + S S
Sbjct: 154 GDNLGIRDGTAENTSLFKPFNKHRKWEKSLTAHRRSFNGAVRAAG-SNQPTKVSSSSSRR 212
Query: 194 NAVN-----STSEQLVGDGVEGAKLGSS-----VSNTKQNSKPRARQQQQSRSKKKKEQL 243
+A++ + EQLV +G + L S VSN + SK +Q++QSR+KK KEQ+
Sbjct: 213 SALSDGDMMTQQEQLVDNGRKDVDLSPSISTSPVSNNNRGSKATEKQRKQSRTKKNKEQV 272
Query: 244 SATVASEQASVGKSCKSVSQAKSS----KCKSEQ---------CADLTSEKTSPGNTLEQ 290
++T AS + KS KS S+A S K +S Q C + S GN +
Sbjct: 273 TSTDASSDVAQKKSTKSSSEANKSNITKKSQSPQASKVRHVSICIYELFQNNSTGNKPVE 332
Query: 291 PLASSALTKQQSKKNSGNCGRKKKSAKATKASLQRQTSEEM-VIVPRGQNTQNPLYPPSG 349
L SS TK QSKK +G+ +K KS K S ++QT M I Q LYP SG
Sbjct: 333 ALDSSVSTKSQSKKATGSSNKKGKSPKVANESPKKQTVHTMGKIKSLEQRPLKKLYPSSG 392
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLA RSGSVRPDDDFSMVWEVPSAAWT
Sbjct: 393 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAGRSGSVRPDDDFSMVWEVPSAAWT 452
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
HLKSIKVAL GAENLILASDPDREGEAIAWHI+EML QQDALH+++TVARVVFHEITE+S
Sbjct: 453 HLKSIKVALGGAENLILASDPDREGEAIAWHIIEMLLQQDALHKDLTVARVVFHEITESS 512
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK AL A REID NLV AYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAAL+LICD
Sbjct: 513 IKSALDAPREIDVNLVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALALICD 572
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
REMEIDEFKPQEYWTVE ++K+ S+++ FP++LTHF SK+LNQ SI SHTEAK IE
Sbjct: 573 REMEIDEFKPQEYWTVEVEFNRKQGSSMNSKFFPSYLTHFDSKKLNQFSISSHTEAKAIE 632
Query: 590 QKINSANFQVIKNSKRSMVRKN-PTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
Q+INS F+VI SKR+ +RKN PTPYITSTLQQDAANKL+FSA YTMKLAQ+LYEGVQL
Sbjct: 633 QEINSLEFKVI-GSKRNKMRKNPPTPYITSTLQQDAANKLHFSAMYTMKLAQRLYEGVQL 691
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
DG AAGLITYMRTDGLH+SDEAAK+IRSL+ ERYGS+ A +G RKYFKKVKNAQEAHE
Sbjct: 692 SDGKAAGLITYMRTDGLHVSDEAAKDIRSLVAERYGSNLA-SDGVRKYFKKVKNAQEAHE 750
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPTDIRRLP+ML+G+LDED LKLY+LIWSRTMACQM+PAT+ QIQVDIGNA+ES+VFR
Sbjct: 751 AIRPTDIRRLPSMLAGVLDEDSLKLYTLIWSRTMACQMEPATIDQIQVDIGNANESVVFR 810
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
S+CS VEF G+QA Y+DV+A AIR ENE N+R E F L+SLK GDPLYL +EL+QHH
Sbjct: 811 STCSGVEFFGYQAVYKDVEAKAIRVDENEGNERGEVFKALSSLKAGDPLYLSLLELEQHH 870
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP+RYSEG+LVKKLEELGIGRPSTYA T+KVLQDRNYVTVK+R+LYPEFRGRMVSAFL
Sbjct: 871 TLPPSRYSEGALVKKLEELGIGRPSTYAITMKVLQDRNYVTVKNRVLYPEFRGRMVSAFL 930
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
SH+FSEVTDYSFTADMETELDNVSAGLTEWKGLL DYW+RFS YC ++HIHQVEKML
Sbjct: 931 SHHFSEVTDYSFTADMETELDNVSAGLTEWKGLLKDYWTRFSMYCNRVSNVHIHQVEKML 990
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
EK FGD LF+ LP+K R+CP C EGTLIFKVSRFG+GYFIGC+QHP+C
Sbjct: 991 EKKFGDFLFSFLPDKSRTCPSCMEGTLIFKVSRFGSGYFIGCDQHPKC 1038
>gi|449437326|ref|XP_004136443.1| PREDICTED: DNA topoisomerase 1-like, partial [Cucumis sativus]
Length = 1126
Score = 1208 bits (3125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 632/1003 (63%), Positives = 760/1003 (75%), Gaps = 44/1003 (4%)
Query: 164 FNKHRKRNNAVSARGKSNATSSSISVSEDVNAVNSTSEQLVGDGVEGAKLGSSVSNTKQN 223
NK+ K V+ K ++S S V+ NS S QLVG E A L SS S++
Sbjct: 157 LNKNWKVAKPVATSRKKRISASEPLGSTSVDGTNS-SNQLVGATKE-ANLVSSSSSSSIR 214
Query: 224 SKPRARQQQQSRSKKKKEQLSATVASEQASVGKSCKSVSQAKS-SKCKSEQCADLTSEKT 282
+ +++S SKKKKE +S+T ++ +VGK QAKS + +Q +K
Sbjct: 215 KASKGLNEKKSWSKKKKEAISSTNDADVEAVGKD----GQAKSFDRSNIDQDVVQDPKKN 270
Query: 283 SPGNTLEQPLASSALTKQQSKKNSGNCGRKKKSAK-ATKASLQRQTSEEMVIVPRGQNTQ 341
G + + SA T+QQS K N RKK+ K A K + + +G+ T
Sbjct: 271 VTGGSSK----DSASTQQQSNKKKRNSSRKKEVLKDANKLPQEASVVFDARWTSQGRTTF 326
Query: 342 NPLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVW 401
LYP +IQ YLGDM+ VLPS+GHVRDLAA+SGSVRPDDDFSMVW
Sbjct: 327 KQLYP----------------LIQNYLGDMFVVLPSHGHVRDLAAKSGSVRPDDDFSMVW 370
Query: 402 EVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVV 461
EVPSAA THLKS++V+L+GAENLILASDPDREGEAIAWHI+EML QDALHE I++ARVV
Sbjct: 371 EVPSAALTHLKSMQVSLNGAENLILASDPDREGEAIAWHIIEMLHHQDALHEGISIARVV 430
Query: 462 FHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQS 521
FHEITEASIK ALQ+ R IDANLVQAYLARRALDYLIGFNISPLLWRKLPGC+SAGRVQS
Sbjct: 431 FHEITEASIKSALQSPRVIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCRSAGRVQS 490
Query: 522 AALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSL-DTFSFPAHLTHFQSKRLNQLSIG 580
AAL+LICDREMEIDEF QEYW+++ L++KES SL + F+ PAHLTHF S++LNQ +I
Sbjct: 491 AALALICDREMEIDEFHAQEYWSIDIELNQKESCSLVEDFAVPAHLTHFDSRKLNQFAIS 550
Query: 581 SHTEAKDIEQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLA 639
S+TEAK+IE + S NFQV+ +SK++ VR+NP PYITSTLQQDAANK NFSA+YTM+LA
Sbjct: 551 SNTEAKNIETALKSVNFQVL-SSKKTKVRRNPPMPYITSTLQQDAANKFNFSASYTMQLA 609
Query: 640 QKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKK 699
QKLYEG+QL DG AAGLITY+RTDGLHISDEA K+IR+LI +RYG + PE GP KYFKK
Sbjct: 610 QKLYEGIQLADGKAAGLITYLRTDGLHISDEAVKDIRTLIMQRYGQNFVPESGP-KYFKK 668
Query: 700 VKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG 759
VKNAQEAHEAIRPTD++RLP+ML G LDED KLYSLIW RT+ACQM+ + QIQ++ G
Sbjct: 669 VKNAQEAHEAIRPTDVQRLPSMLVGTLDEDSHKLYSLIWLRTVACQMESSITEQIQIECG 728
Query: 760 NADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYL 819
+DESI+ RS+CSRV+F GFQ +ED +A A+++K++E+N R E F ILN+LK GD L L
Sbjct: 729 PSDESIISRSTCSRVQFRGFQEVFEDPEADAVKHKDHEDNGRDELFRILNALKPGDQLSL 788
Query: 820 GEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEF 879
VELKQH TQPP RYSEG+LVKK+EELGIGRPSTYA+T+KVLQDR YV+VKSR+L+PEF
Sbjct: 789 AAVELKQHFTQPPPRYSEGALVKKMEELGIGRPSTYATTIKVLQDRKYVSVKSRVLHPEF 848
Query: 880 RGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSL 939
RGRMVSAFL H+FSEVTDYSFTADME ELDNVSAGLTEWKGLL DYW+RFSSY S+
Sbjct: 849 RGRMVSAFLCHHFSEVTDYSFTADMENELDNVSAGLTEWKGLLRDYWTRFSSYFESVNSV 908
Query: 940 HIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYI 999
HIHQVEKMLEK +G +F+ LP+ R+CP C EGTL FK+SRFGAGYF+GC+QHP+C YI
Sbjct: 909 HIHQVEKMLEKKYGSFIFSFLPDNSRTCPSCQEGTLTFKLSRFGAGYFVGCDQHPKCKYI 968
Query: 1000 AKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKR 1059
AKT +G+D++ D ++ EPKL+G HP EK+LLK GP+G YVQLGEDR GYLPKR
Sbjct: 969 AKTSHGEDEDND-----NSLKEPKLLGLHPDLNEKILLKKGPFGLYVQLGEDRKGYLPKR 1023
Query: 1060 ASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKN 1119
AS+S IKDV SITLEDA+E L YPV LGNHPKDGQP+++++AR GF+V H RT ASVP+N
Sbjct: 1024 ASLSQIKDVTSITLEDAVERLCYPVTLGNHPKDGQPVIIKMARVGFAVGHGRTAASVPEN 1083
Query: 1120 MKPNDVTLEKALEFLSGKDVRRCGRP-------KGKPKREEAL 1155
+KPNDV L KALE LS +VRR G P K K K EE +
Sbjct: 1084 LKPNDVDLAKALELLSSSNVRRSGLPLFPNSLSKEKQKGEEKM 1126
>gi|449437328|ref|XP_004136444.1| PREDICTED: DNA topoisomerase 1-like [Cucumis sativus]
Length = 1163
Score = 1200 bits (3104), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 654/1121 (58%), Positives = 811/1121 (72%), Gaps = 58/1121 (5%)
Query: 61 SGLRFRKGRVTSAITISYPKV----ACD----FFLFSGRTDCSKGALSI-HSHLKPRSSF 111
S L FRKG VT A+T K ACD F L+S + L HS P +S
Sbjct: 70 SQLVFRKGGVTFAVTTERTKAGQYRACDGPSVFTLYS------RLPLRFPHSAALPNAS- 122
Query: 112 CYMPLDNGIRFSSL-NCEPFSKRCFSQLSRGKIGIEKIGVSDARSGSGGGKSWF-----N 165
L NGI L N F ++ FS + G +K V AR G+ S F N
Sbjct: 123 -NQQLLNGIFAHKLPNYRAFGRKFFSNTTEALNGTKKKNVKYARKGT----STFPIEGSN 177
Query: 166 KHRKRNNAVSARGKSNATSSSISVSEDVNAVNSTSEQLVGDGVEGAKLGSSVSNTKQNSK 225
K K V+ K ++S S S V NS S+QLVG ++ A L SS S+T++ SK
Sbjct: 178 KKLKGEKPVATSRKKRISASKASGSTYVGETNS-SDQLVG-AMKEANLVSSSSSTRKASK 235
Query: 226 PRARQQQQSRSKKKKEQLSATVASEQASVGKSCKSVSQAKSSKCKSEQCADLTSEKTSPG 285
+++SRSKKKKE +S+T A V CK ++Q +K G
Sbjct: 236 --GLNEKKSRSKKKKEAISST---NDADVKAVCKDGQSKSFGSSNTDQDVVQDPKKNVTG 290
Query: 286 NTLEQPLASSALTKQQSKKNSGNCGRKKKSAKATKASLQRQTSEEMVIVPRG----QNTQ 341
T + SA TK++S K + RKK+ ATK++ + + +V+ RG + T
Sbjct: 291 GTSKD----SASTKKKSNKQKRSSSRKKE---ATKSANKLRQKPHVVVDARGTSQVRTTF 343
Query: 342 NPLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVW 401
LYPP GKSVV+VESV KAKVIQ YLGDM+ VLPS+GHVRDLAARSGSVRPDDDF MVW
Sbjct: 344 KQLYPPMGKSVVIVESVAKAKVIQNYLGDMFVVLPSHGHVRDLAARSGSVRPDDDFIMVW 403
Query: 402 EVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVV 461
EVPSAAWTHLKSI+++L+GAENLILASDPDREGEAIAWHI+EMLQ Q++LHE I++ARVV
Sbjct: 404 EVPSAAWTHLKSIELSLNGAENLILASDPDREGEAIAWHIIEMLQHQNSLHEGISIARVV 463
Query: 462 FHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQS 521
FHEITEASIK ALQ+ R ID NLVQAYLARRALDYLIGFNISPLLWRKLPGC+SAGRVQS
Sbjct: 464 FHEITEASIKSALQSPRVIDENLVQAYLARRALDYLIGFNISPLLWRKLPGCRSAGRVQS 523
Query: 522 AALSLICDREMEIDEFKPQEYWTVEAVLDKKE-SHSLDTFSFPAHLTHFQSKRLNQLSIG 580
AAL+LICDREMEIDEF QEYWT++ L++K S+ F+ PAHLTHF K+LNQL+I
Sbjct: 524 AALALICDREMEIDEFHAQEYWTIDIKLNQKNPCSSVGDFAVPAHLTHFDFKKLNQLAIS 583
Query: 581 SHTEAKDIEQKINSANFQVIKNSKRSMVRKN-PTPYITSTLQQDAANKLNFSATYTMKLA 639
S+ EAK+IE + S NFQV+ +SK+S+V+ N P PYITSTLQQDAANK NF A+YTM+LA
Sbjct: 584 SNMEAKNIETALKSVNFQVL-SSKKSIVQTNPPMPYITSTLQQDAANKFNFPASYTMQLA 642
Query: 640 QKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKK 699
QKLYEG+QL DG AAGLITY RTDGLHISDEA K+I SLI +RYG + G KYFKK
Sbjct: 643 QKLYEGIQLADGKAAGLITYPRTDGLHISDEAVKDIHSLIMQRYGQDFVSKSG-HKYFKK 701
Query: 700 VKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG 759
V AQEA EAIRPTD++ LP+ML G+LDED KLYSLIW RTMACQM+P+ QI++D G
Sbjct: 702 VNKAQEADEAIRPTDVQLLPSMLVGILDEDSHKLYSLIWLRTMACQMEPSISEQIEIDCG 761
Query: 760 NADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNS--LKTGDPL 817
DESIV S+CSRV+F GFQ +ED + A++++ +EE+ + E F ILN + +GD L
Sbjct: 762 LTDESIVSGSTCSRVQFRGFQDIFEDPEVHAVKHENHEESGQDELFRILNDHIIVSGDQL 821
Query: 818 YLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYP 877
L VELKQH TQPP RYSEG+LVK++EELGIGRPSTYA+T+KVLQDRNYV+VKS +L+P
Sbjct: 822 SLLAVELKQHFTQPPPRYSEGTLVKRMEELGIGRPSTYATTIKVLQDRNYVSVKSCVLHP 881
Query: 878 EFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQ 937
EFRGR+VSAFL H+FSEV++ S TAD+E +LDNVSAGLTEWKG L D W++ SSYC A
Sbjct: 882 EFRGRIVSAFLCHHFSEVSNCSSTADIENKLDNVSAGLTEWKGFLRDCWTQISSYCKRAN 941
Query: 938 SLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
+++++QVEKMLEK +G +F+ LP+ R+CP C +GTL FKVSRFG GY+IGC+QHP C
Sbjct: 942 NVNVNQVEKMLEKKYGSFIFSFLPDNSRACPSCPDGTLCFKVSRFGVGYYIGCDQHPSCK 1001
Query: 998 YIAKTLYGDDDEEDTLQRNTNVD----EPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT 1053
Y+AKTL+G+D+++D + + +D EPK++G HP KEKVLLK+GP+G Y+QLGEDR
Sbjct: 1002 YVAKTLFGEDEDKD--KDPSEIDNGGVEPKVLGLHPVLKEKVLLKTGPFGCYIQLGEDRK 1059
Query: 1054 GYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTI 1113
GY+PKRASV IKDV+SITL+ A++ LRYP+ LG HPKDGQP+++++AR GF++RH RTI
Sbjct: 1060 GYMPKRASVFEIKDVNSITLDFAIDRLRYPITLGKHPKDGQPVIIKIARTGFTIRHGRTI 1119
Query: 1114 ASVPKNMKPNDVTLEKALEFLSGKDVRRCGRPKG-KPKREE 1153
AS+PKN+KPN+V L KAL+ LS VRR GRPKG PK E+
Sbjct: 1120 ASIPKNLKPNNVDLAKALKLLSSSGVRRVGRPKGLLPKVED 1160
>gi|297802912|ref|XP_002869340.1| DNA topoisomerase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297315176|gb|EFH45599.1| DNA topoisomerase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 1325
Score = 1194 bits (3089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/1015 (60%), Positives = 744/1015 (73%), Gaps = 89/1015 (8%)
Query: 186 SISVSEDVNAVNSTSEQLVGDGVEG--AKLGSSVSNTKQNSKPRARQQQQSRSKKKK-EQ 242
++ S + V ST E ++GDG G A+L ++ S ++ +A ++ R K KK E
Sbjct: 326 NVLASSEAEVVTST-EPVIGDGNSGIKAELSTAASPASASNGNQATTVKKRRPKNKKVED 384
Query: 243 LSATVAS--EQASVGKSCKSVSQAK--------SSKCKSEQCADLTSE-------KTSPG 285
S++V E S+ +S SV + K SS KS C +E + +
Sbjct: 385 KSSSVGPVLEAVSLEESPISVPKPKHSGSGNRKSSSAKSYPCLFYLTEYQYNSQKEVAKN 444
Query: 286 NTLEQPLASSALTKQQSKKNSGNCGRKKKSAKATKASLQRQTSEEM--VIVPRGQNTQNP 343
+ +E+P K + NS + + KS KA+KA Q+ + M I RGQN P
Sbjct: 445 HPVEEP-------KSPAPSNSKSEQQHLKSTKASKAPKQKLVPQHMKNSIEHRGQNASKP 497
Query: 344 LYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEV 403
LYPPSGKSV+VVES+TKAK+IQGYLGDMYEVLPSYGH+RDLA RSGSVRPDDDFSMVWEV
Sbjct: 498 LYPPSGKSVIVVESITKAKIIQGYLGDMYEVLPSYGHIRDLATRSGSVRPDDDFSMVWEV 557
Query: 404 PSAAWTHLKSIKVALSGA-------------------------------ENLILASDPDR 432
PS+AWTH+KSIK+ A ENLILASDPDR
Sbjct: 558 PSSAWTHIKSIKLLTYDAGSNLYDVNYFFPVVFLIVLLYLIMFTLFLRVENLILASDPDR 617
Query: 433 EGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARR 492
EGEAIAWH++EMLQQQ ALHE++TVARVVFHEITE++IK ALQ+ REID +LV AYLARR
Sbjct: 618 EGEAIAWHVIEMLQQQGALHESMTVARVVFHEITESAIKTALQSPREIDGDLVHAYLARR 677
Query: 493 ALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKK 552
ALDYLIGFNISPLLWRKLPGC SAGRVQSAAL+L+CDRE EID FKPQEYWTV K
Sbjct: 678 ALDYLIGFNISPLLWRKLPGCPSAGRVQSAALALVCDRESEIDGFKPQEYWTVGIKAKGK 737
Query: 553 ESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNP 612
+ ++ +F AHLT SKRLNQLSI S A+DIEQ+I S F ++K +K S RKNP
Sbjct: 738 D----NSATFSAHLTSLNSKRLNQLSISSEASAQDIEQRIKSEGF-LVKGTKTSTTRKNP 792
Query: 613 -TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEA 671
TPYITSTLQQDAANKL+FS +TMKLAQKLYEGVQL DG +AGLITYMRTDGLHI+DEA
Sbjct: 793 PTPYITSTLQQDAANKLHFSTAHTMKLAQKLYEGVQLSDGKSAGLITYMRTDGLHIADEA 852
Query: 672 AKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCL 731
K+I+SL+ ERYG + + PRKYFKKVKNAQEAHEAIRPTDIRRLP+ ++ LLD D L
Sbjct: 853 IKDIQSLVAERYGKNFT-SDSPRKYFKKVKNAQEAHEAIRPTDIRRLPSTIASLLDADSL 911
Query: 732 KLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAI 791
KLY+LIWSR +ACQM+PA++ QIQ+DIGNA ESI+FRSSCS+VEFLG+QA YED +A AI
Sbjct: 912 KLYTLIWSRAVACQMEPASIAQIQLDIGNASESIIFRSSCSKVEFLGYQAVYEDPEAKAI 971
Query: 792 RYKENEEN-DRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIG 850
+ K+ +++ +R E F L+ LK GD L +GEVELKQHHTQ P RYSEGSL+KKLEELGIG
Sbjct: 972 KNKDGDQSSEREETFKTLSLLKDGDLLQIGEVELKQHHTQNPPRYSEGSLIKKLEELGIG 1031
Query: 851 RPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDN 910
RPSTYAS +VLQ +SAFL+HYF+E+TDYSFTADME ELDN
Sbjct: 1032 RPSTYASIFRVLQ--------------------LSAFLTHYFTEITDYSFTADMEVELDN 1071
Query: 911 VSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVC 970
VS G+TEWKGLL DYW+RFS+YC +++ QVEKMLEK + D LF+SLP R+CP C
Sbjct: 1072 VSGGVTEWKGLLRDYWTRFSAYCKRVENVQRQQVEKMLEKKYEDFLFSSLPYPSRTCPSC 1131
Query: 971 GEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPA 1030
EGTL FK S++GAGYFIGC+QHP C +IAKT+YG+D++ED +NT V+EPKL+G HP
Sbjct: 1132 MEGTLSFKASKYGAGYFIGCDQHPSCKFIAKTIYGEDEDEDDPPKNTCVEEPKLLGLHPN 1191
Query: 1031 SKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHP 1090
+ EKV+LK GPYG YVQLGED+ G+ PKRA+ +HIKDV+SITLE ALELLRYP+ LGNHP
Sbjct: 1192 TSEKVILKCGPYGHYVQLGEDKKGHTPKRANAAHIKDVNSITLESALELLRYPLTLGNHP 1251
Query: 1091 KDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKDVRRCGRP 1145
DGQP++LRL+++GF+++HR T+A+VPKN +P +VTLEKA++ LSGK+ R GRP
Sbjct: 1252 IDGQPVVLRLSKSGFTIKHRCTMATVPKNTEPGEVTLEKAMKLLSGKNARHSGRP 1306
>gi|357118138|ref|XP_003560815.1| PREDICTED: DNA topoisomerase 1-like [Brachypodium distachyon]
Length = 877
Score = 1065 bits (2753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/807 (64%), Positives = 621/807 (76%), Gaps = 3/807 (0%)
Query: 343 PLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWE 402
PL+PP KSVVVVES TKAKVIQ YLGDMYEVLPSYGHVRDLA +S SVRPDDDFSMVWE
Sbjct: 62 PLHPPIAKSVVVVESATKAKVIQKYLGDMYEVLPSYGHVRDLAGKSRSVRPDDDFSMVWE 121
Query: 403 VPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVF 462
VPSAAWTHLKSI+VAL GAENLILASDPDREGEAIAWHI EML+QQ AL ++TVARVVF
Sbjct: 122 VPSAAWTHLKSIRVALKGAENLILASDPDREGEAIAWHIKEMLEQQKALGCHVTVARVVF 181
Query: 463 HEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSA 522
HEITE +IK AL R ID +LV AYLARR+LDYLIGF ISPLLWRKLPGC+SAGRVQSA
Sbjct: 182 HEITEDAIKNALMFPRYIDMDLVNAYLARRSLDYLIGFGISPLLWRKLPGCRSAGRVQSA 241
Query: 523 ALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSH 582
AL+L+ DRE EI++F PQEYWTV+ + S S + + H SK+L+QLSI S
Sbjct: 242 ALALVSDRETEIEQFSPQEYWTVDTDFKIRCSDSSKGLCLTSRIKHLNSKKLDQLSISSQ 301
Query: 583 TEAKDIEQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQK 641
EA+ IE++I S+ F+V + KRS + KNP PYITS+LQQDAANKL+FSA +TMK+AQK
Sbjct: 302 EEARAIEKRIYSSQFEV-RGVKRSKIHKNPPMPYITSSLQQDAANKLHFSAGHTMKVAQK 360
Query: 642 LYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVK 701
LYEG+ L A GLITY+RTDG HISD AA+++RSL+ ERYG +A E+ RKY KKVK
Sbjct: 361 LYEGISLSSEEATGLITYLRTDGFHISDGAAEDVRSLVKERYGEQYASED-VRKYLKKVK 419
Query: 702 NAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNA 761
NAQEAHEAIRPT IRRLP+ L G+LDED LKLY+LIW RTMACQM+ + IQVDIGN
Sbjct: 420 NAQEAHEAIRPTSIRRLPSSLVGILDEDSLKLYALIWRRTMACQMEASRTELIQVDIGNP 479
Query: 762 DESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGE 821
+ F SS S+++F G+QA Y+D +A E H+ F L+ L+ D +
Sbjct: 480 GGDMTFHSSASKLDFKGYQAVYDDTEASGSSENPEGEALHHDNFEALSKLEMKDLVSPVN 539
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRG 881
V L QH T+PP+RYSEG+L+KKLEELGIGRPSTYAS ++VLQDR YVT+KSR+L+PEFRG
Sbjct: 540 VHLGQHFTKPPSRYSEGALIKKLEELGIGRPSTYASIMRVLQDRKYVTIKSRVLHPEFRG 599
Query: 882 RMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI 941
RMVSAFLSH+FSE+ DYSFTA+METELDNVSAG TEWKGLL DYW RFS YC A +
Sbjct: 600 RMVSAFLSHHFSEIADYSFTANMETELDNVSAGSTEWKGLLKDYWERFSKYCGDASQWDV 659
Query: 942 HQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK 1001
+VE+MLE+ F LF L + R CP C EGTL FKVSRFG GYFIGC++HP+C YIA+
Sbjct: 660 RKVERMLEEKFRPILFPDLDDASRICPSCSEGTLRFKVSRFGEGYFIGCDRHPKCKYIAR 719
Query: 1002 TLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRAS 1061
TL +DDE + + EP+L+G P EKV LK GPYG+Y+Q+GEDR G KRAS
Sbjct: 720 TLSDEDDENEACEETKWNFEPRLLGVMPNLNEKVFLKQGPYGYYIQVGEDRKGISQKRAS 779
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+S +K+VDSITLEDA+ELL+YP LG HP D P+++ ++AGFSVRHRRT+A +PKN
Sbjct: 780 LSEVKNVDSITLEDAIELLQYPKILGKHPDDEYPVLMTHSKAGFSVRHRRTVAPLPKNTD 839
Query: 1122 PNDVTLEKALEFLSGKDVRRCGRPKGK 1148
+TLE AL+ L+GK+V++ GRP GK
Sbjct: 840 LKKITLECALKLLAGKNVKKFGRPLGK 866
>gi|125596851|gb|EAZ36631.1| hypothetical protein OsJ_20977 [Oryza sativa Japonica Group]
Length = 1180
Score = 1056 bits (2732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/892 (59%), Positives = 633/892 (70%), Gaps = 80/892 (8%)
Query: 343 PLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWE 402
PLYPP+ KSV+VVESVTKAKVIQ YLGDMYEVLPSYGHVRDLA RS SVRPDDDFSMVWE
Sbjct: 289 PLYPPTAKSVLVVESVTKAKVIQKYLGDMYEVLPSYGHVRDLAGRSKSVRPDDDFSMVWE 348
Query: 403 VPSAAWTHLKSIKVALSG------AENLILASDPDREGEAIAWHIVEMLQQQDALHENIT 456
VP+AAWTHLKSI+ AL G AENLILASDPDREGEAIAWHI EML+QQDAL +T
Sbjct: 349 VPAAAWTHLKSIRTALKGYDNAVWAENLILASDPDREGEAIAWHIKEMLEQQDALGSKVT 408
Query: 457 VARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSA 516
VARVVFHEITE ++K AL + R ID +LV AYLARR+LDYLIGF ISPLLWRKLPGCQSA
Sbjct: 409 VARVVFHEITEDAVKKALISPRYIDMDLVNAYLARRSLDYLIGFGISPLLWRKLPGCQSA 468
Query: 517 GRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQ 576
GRVQSAAL+L+CDRE EI++F PQEYWTV+ + S + + + + H SK+L+Q
Sbjct: 469 GRVQSAALALVCDREAEIEQFDPQEYWTVDTDFKTQHSGPSNGLNLQSRIKHLNSKKLDQ 528
Query: 577 LSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYT 635
LSI S EA +IE++I S+ F+V KRS + KNP PYITS+LQQDAANKL+FSA YT
Sbjct: 529 LSIRSQEEAHNIEKRIYSSQFEVT-GIKRSKINKNPPMPYITSSLQQDAANKLHFSAGYT 587
Query: 636 MKLAQKLYEGVQLPDGTAAGLITYMRTDGLH----------------------------- 666
MK+AQKLYEG+ L A GLITY+RTDG H
Sbjct: 588 MKVAQKLYEGINLSSEEATGLITYIRTDGFHWYQSARGQCVFLCSRVRGGIEEALACLAC 647
Query: 667 ------------------------ISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
ISD AA++I SL+ +RYG +A EG RKYFKKVKN
Sbjct: 648 EQLSAAQATIIAAHDNRIVANSIFISDGAAEDILSLVKQRYGEEYA-SEGIRKYFKKVKN 706
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
AQEAHEAIRPT IRRLP+ L G LD+D LKLY+LIW RTMACQM+ + IQVDIGN++
Sbjct: 707 AQEAHEAIRPTSIRRLPSSLVGALDDDSLKLYTLIWKRTMACQMEASRTDMIQVDIGNSE 766
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
++F SS SR++F G+QA Y+D +A Y + + F L+ L+ D + V
Sbjct: 767 GDMIFHSSASRLDFKGYQAVYDDTEASPSSYNSEVDAVHQDNFEALSKLEVKDLVSPVNV 826
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
L QH T+PP+RYSE +L+KKLEELGIGRPSTYAS +KVLQDR YVT+KSR+L+PEFRGR
Sbjct: 827 HLSQHFTKPPSRYSESALIKKLEELGIGRPSTYASIMKVLQDRKYVTIKSRVLHPEFRGR 886
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
MVSAFL H+FSEV D SFTA+METELDNVSAG TEWKGLL D+W RF+ YC A L +
Sbjct: 887 MVSAFLMHHFSEVADLSFTANMETELDNVSAGSTEWKGLLKDFWERFNKYCGDASRLDVR 946
Query: 943 -----------------QVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAG 985
+VE+MLE+ FG LF+ L N R CP C EGTL FKVSR+G G
Sbjct: 947 KVERKSLLISHKVQLPLKVERMLEEKFGSILFSDLDNDSRICPSCSEGTLRFKVSRYGEG 1006
Query: 986 YFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFY 1045
YFIGC++HP+C YIA+TL DDDE + P+L+G P S EKV LK GPYG Y
Sbjct: 1007 YFIGCDRHPKCKYIARTLSDDDDETEASDETQRTFTPRLLGALPDSDEKVFLKQGPYGHY 1066
Query: 1046 VQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGF 1105
VQ+GEDR G PKRA +S +KD+DSITL+DA+ELL+YP LG HP D P+++ ++AGF
Sbjct: 1067 VQVGEDRKGVSPKRAPLSEVKDIDSITLKDAIELLQYPKILGKHPDDDLPVLITHSKAGF 1126
Query: 1106 SVRHRRTIASVPKNMKPNDVTLEKALEFLSGKDVRRCGRPKGKPKRE-EALE 1156
S+RHRRT+AS+PK+ P +TLE+AL+ L+GK+VR GRPKGK K+E E LE
Sbjct: 1127 SIRHRRTLASLPKSADPKKITLERALKLLTGKNVRMFGRPKGKTKKEAEPLE 1178
>gi|242092112|ref|XP_002436546.1| hypothetical protein SORBIDRAFT_10g004493 [Sorghum bicolor]
gi|241914769|gb|EER87913.1| hypothetical protein SORBIDRAFT_10g004493 [Sorghum bicolor]
Length = 1094
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/796 (63%), Positives = 614/796 (77%), Gaps = 7/796 (0%)
Query: 343 PLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWE 402
PLYPP KSVVVVES TKAKVIQ YLGDMYEVLPSYGHVRDLA RS SVRPDDDFSMVWE
Sbjct: 303 PLYPPRAKSVVVVESATKAKVIQNYLGDMYEVLPSYGHVRDLAGRSKSVRPDDDFSMVWE 362
Query: 403 VPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVF 462
VP+AAWTHLKSIKVAL GAENLILASDPDREGEAIAWHI EML+QQ AL ++TVARV F
Sbjct: 363 VPAAAWTHLKSIKVALKGAENLILASDPDREGEAIAWHIKEMLEQQGALGCDVTVARVAF 422
Query: 463 HEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSA 522
HEITE +IK AL + R ID +LV AYLARR+LDYLIGF ISPLLWRKLPGCQSAGRVQSA
Sbjct: 423 HEITEDAIKKALMSPRYIDMDLVNAYLARRSLDYLIGFGISPLLWRKLPGCQSAGRVQSA 482
Query: 523 ALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSH 582
AL+L+CDRE EI++FKPQEYWTV+ + + P + H SK+L+QLSI S
Sbjct: 483 ALALVCDREAEIEQFKPQEYWTVQTYFKMHFADPPNGTYIPFRIKHLNSKKLDQLSIRSQ 542
Query: 583 TEAKDIEQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQK 641
EA+ IE++I+S+ F+V+ KRS + KNP PYITS+LQQDAANKL+F+A YTMK+AQK
Sbjct: 543 EEAQAIEKRIHSSKFEVL-GVKRSKIHKNPPMPYITSSLQQDAANKLHFTAGYTMKIAQK 601
Query: 642 LYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVK 701
LYEG+ L GLITY+RTDG H+SD AA++IRSL+ ERYG + E+ RKY KKVK
Sbjct: 602 LYEGINLSSEETTGLITYIRTDGFHVSDGAAEDIRSLVKERYGQKYVSEDT-RKYLKKVK 660
Query: 702 NAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNA 761
NAQEAHEAIRPT IRRLP+ L G+LD+D LKLY+LIW RTMACQM+ + IQVDIG
Sbjct: 661 NAQEAHEAIRPTSIRRLPSSLVGILDDDSLKLYTLIWKRTMACQMEASRTEMIQVDIGTP 720
Query: 762 DESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDR--HEAFAILNSLKTGDPLYL 819
+ ++F S S+++F G+QA YED +A I +N E D + F L+ L D ++
Sbjct: 721 EGEMIFHSVASKLDFKGYQAVYEDTEA--IPCSDNSERDSVDEDNFEALSKLMVKDLVFP 778
Query: 820 GEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEF 879
V L QH T+PP+RYSEG+L+KKLEELGIGRPSTYAS +KVLQDR YVT KSR+L+PEF
Sbjct: 779 VNVHLGQHFTKPPSRYSEGALIKKLEELGIGRPSTYASIMKVLQDRKYVTAKSRVLHPEF 838
Query: 880 RGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSL 939
RGRMVSAFL H+FSEV DYSFTA+METELDNVSAG TEWKGLL DYW RF+ YC A L
Sbjct: 839 RGRMVSAFLLHHFSEVADYSFTANMETELDNVSAGSTEWKGLLKDYWERFNKYCADASKL 898
Query: 940 HIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYI 999
+VE+MLE+ FG LF + R CP C EGTL FKVSR+G GYFIGC++HP+C YI
Sbjct: 899 DGRKVERMLEEKFGPILFPDVDKDSRICPSCSEGTLRFKVSRYGEGYFIGCDRHPKCKYI 958
Query: 1000 AKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKR 1059
A++L +DE + + + P+L+G P S +KV LK GPYG+YVQ+GED+ G PKR
Sbjct: 959 ARSLSQQEDETEPTEESPKSFTPRLLGVMPDSDQKVFLKQGPYGYYVQIGEDKKGLFPKR 1018
Query: 1060 ASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKN 1119
AS+S +KD+DS+TLEDA+ELL+YP LG HP+D P+++ ++ G++++HRR++A VPK+
Sbjct: 1019 ASLSEVKDIDSVTLEDAIELLQYPKILGKHPEDDHPVLITHSKVGYNIKHRRSLALVPKS 1078
Query: 1120 MKPNDVTLEKALEFLS 1135
P +TLE+AL+ LS
Sbjct: 1079 TDPKKMTLERALKLLS 1094
>gi|222622849|gb|EEE56981.1| hypothetical protein OsJ_06712 [Oryza sativa Japonica Group]
Length = 962
Score = 1053 bits (2724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/956 (55%), Positives = 675/956 (70%), Gaps = 45/956 (4%)
Query: 235 RSKKKKEQL-SATVASEQASVGKSCKSVSQAKSSKCKSEQCADLTSEKT--------SPG 285
RS+KKK L S ++ +++AS S S S + + + D++ +K S
Sbjct: 15 RSEKKKSTLPSCSIITDEASTSTSNHSKSAIGTENSSTSRIKDVSEDKKVSIKKQSKSAK 74
Query: 286 NTLEQPLASSALTKQQSKKN------SGNCGRKKKSAK------------------ATKA 321
+ ++ ++++++K+ + N R KK++ TK+
Sbjct: 75 TIAAAKIGTTDVSEEENKREISKSEKNANISRDKKTSNRLKKFSKAKKSAAAKAEICTKS 134
Query: 322 SLQRQTSEEMVIVPRGQNTQNPLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHV 381
S+ SE+ +VP LYPP+ KSV+VVESVTKAKVIQ YLGDMYEVLPSYGHV
Sbjct: 135 SVDSSDSEQKPLVP--------LYPPTAKSVIVVESVTKAKVIQKYLGDMYEVLPSYGHV 186
Query: 382 RDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHI 441
RDLA RS SVRPDDDFSMVWEVP+AAWTHLK I+ AL GAENLILASDPDREGE IAWHI
Sbjct: 187 RDLAGRSKSVRPDDDFSMVWEVPAAAWTHLKRIRTALRGAENLILASDPDREGETIAWHI 246
Query: 442 VEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFN 501
EML++QDAL N+TVARVVFHEITE ++K AL + R ID NL+ AYLARR+LDYLIGF
Sbjct: 247 KEMLERQDALGCNVTVARVVFHEITEDAVKNALMSPRYIDMNLINAYLARRSLDYLIGFG 306
Query: 502 ISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFS 561
ISPLLWRKLPGCQSAGR Q AAL+L+CDRE EI++F P+EYWT++ + S + +
Sbjct: 307 ISPLLWRKLPGCQSAGRDQFAALALLCDREAEIEQFNPEEYWTIDTDFKTQHSGPSNGLN 366
Query: 562 FPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNP-TPYITSTL 620
A + H SK+L+QLSI S EA+DIE++I S+ F+VI KRS + KNP PYITS+L
Sbjct: 367 LQAQIKHLNSKKLDQLSIWSQEEAQDIEKRIYSSQFEVI-GIKRSKIHKNPPMPYITSSL 425
Query: 621 QQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIF 680
QQDAANKL+FSA YTMK+AQKLYEG+ L A GLITY+RTDG HISD AA++I SL+
Sbjct: 426 QQDAANKLHFSAGYTMKIAQKLYEGITLSSEDATGLITYIRTDGFHISDVAAEDILSLVK 485
Query: 681 ERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSR 740
+RYG +A EG RKYFKKVKNAQE+HEAIRPT IRRLP+ L LD+D LKLY+LIW R
Sbjct: 486 QRYGEEYA-SEGIRKYFKKVKNAQESHEAIRPTSIRRLPSSLVSTLDDDSLKLYALIWKR 544
Query: 741 TMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEEND 800
TMACQM+ + IQVDIGN+ ++F SS S ++F G+QA Y+D +A ++
Sbjct: 545 TMACQMEASRAEMIQVDIGNSKGDMIFHSSASNLDFKGYQAVYDDTEASPSSNNSEDDAV 604
Query: 801 RHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLK 860
+ F L+ LK D + V L Q+ T+PP+RYSE +L+K+LEELGIG PSTY+S +K
Sbjct: 605 HQDNFEALSKLKVKDLMSPVNVHLAQNFTKPPSRYSESALIKRLEELGIGGPSTYSSIMK 664
Query: 861 VLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKG 920
VLQDRN+VTVK ++++PEFRGRMVSAFL+H+FSEV D SFTA++ETELDNVSAG TEWKG
Sbjct: 665 VLQDRNHVTVKGQVVHPEFRGRMVSAFLTHHFSEVADLSFTANLETELDNVSAGSTEWKG 724
Query: 921 LLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVS 980
LL D+W RF+ YC A L + +VE+MLE+ FG LF L N R CP C EGTL KVS
Sbjct: 725 LLKDFWERFNKYCGNASRLQVRKVERMLEEKFGSILFPDLDNDSRICPSCSEGTLRLKVS 784
Query: 981 RFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSG 1040
+ G GYFIGC++HP+C YIA+TL + DE + + P+L+G P S EKV LK G
Sbjct: 785 KHGEGYFIGCDRHPKCKYIARTLSVEVDETEASDEIQSTFTPRLLGVLPDSDEKVFLKQG 844
Query: 1041 PYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRL 1100
PYG Y+Q+GED G KRA +S +KD+DSITLEDA+ELL+YP LG HP D P+++
Sbjct: 845 PYGHYIQVGEDIKGVSRKRAPLSEVKDIDSITLEDAIELLQYPKILGKHPDDDLPVLVTH 904
Query: 1101 ARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKDVRRCGRPKGKPKREEALE 1156
+++GF +RHRRT+A +PK+ P ++TLE+AL+ L+GK+V R GRPKG K E LE
Sbjct: 905 SKSGFRIRHRRTLAPLPKSADPKEITLERALKLLTGKNVIRFGRPKG-IKNPEPLE 959
>gi|218190725|gb|EEC73152.1| hypothetical protein OsI_07185 [Oryza sativa Indica Group]
Length = 968
Score = 1040 bits (2689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/962 (55%), Positives = 674/962 (70%), Gaps = 51/962 (5%)
Query: 235 RSKKKKEQL-SATVASEQASVGKSCKSVSQAKSSKCKSEQCADLTSEKT--------SPG 285
RS+KKK L S ++ +++AS S S S + + + D++ +K S
Sbjct: 15 RSEKKKSTLPSCSIITDEASTSTSNHSKSAIGTENSSTSRIKDVSEDKKVSIKKQSKSAK 74
Query: 286 NTLEQPLASSALTKQQSKKN------SGNCGRKKKSAK------------------ATKA 321
+ ++ ++++++K+ + N R KK++ TK+
Sbjct: 75 TIAAAKIGTTDVSEEENKREISKSEKNANISRDKKTSNRLKKFSKAKKSAVAKAEICTKS 134
Query: 322 SLQRQTSEEMVIVPRGQNTQNPLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHV 381
S+ SE+ +VP LYPP+ KSV+VVESVTKAKVIQ YLGDMYEVLPSYGHV
Sbjct: 135 SVDSSDSEQKPLVP--------LYPPTAKSVLVVESVTKAKVIQKYLGDMYEVLPSYGHV 186
Query: 382 RDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHI 441
RDLA RS SVRPDDDFSMVWEVP+AAWTHLK I+ AL GAENLILASDPDREGE IAWHI
Sbjct: 187 RDLAGRSKSVRPDDDFSMVWEVPAAAWTHLKRIRTALRGAENLILASDPDREGETIAWHI 246
Query: 442 VEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFN 501
EML++QDAL N+TVARVVFHEITE ++K AL + R ID NL+ AYLARR+LDYLIGF
Sbjct: 247 KEMLERQDALGCNVTVARVVFHEITEDAVKNALMSPRYIDMNLINAYLARRSLDYLIGFG 306
Query: 502 ISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFS 561
ISPLLWRKLPGCQSAGRVQ AAL+L+CDRE EI++F P+EYWT++ + S + +
Sbjct: 307 ISPLLWRKLPGCQSAGRVQFAALALLCDREAEIEQFNPEEYWTIDTDFKTQHSGPSNGLN 366
Query: 562 FPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKN-PTPYITSTL 620
A + H SK+L+QLSI S EA+DIE++I S+ F+VI KRS + KN P PYITS+L
Sbjct: 367 LQAQIKHLNSKKLDQLSIWSQEEAQDIEKRIYSSQFEVI-GIKRSKIHKNPPMPYITSSL 425
Query: 621 QQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIF 680
QQDAANKL+FSA YTMK+AQKLYEG+ L A GLITY+RTDG HISD AA++I SL+
Sbjct: 426 QQDAANKLHFSAGYTMKIAQKLYEGITLSSEDATGLITYIRTDGFHISDVAAEDILSLVK 485
Query: 681 ERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRR-----LPAMLSGLLDEDCLKLYS 735
+RYG +A EG RKYFKKVKNAQE+HEAIRPT IR L A L LD+D LKLY+
Sbjct: 486 QRYGEEYA-SEGIRKYFKKVKNAQESHEAIRPTSIRSSVVIYLAASLVSTLDDDSLKLYA 544
Query: 736 LIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKE 795
LIW RTMACQM+ + IQVDIGN+ ++F SS S ++F G+QA Y+D +A
Sbjct: 545 LIWKRTMACQMEASRAEMIQVDIGNSKGDMIFHSSASNLDFKGYQAVYDDTEASPSSNNS 604
Query: 796 NEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTY 855
++ + F L+ LK D + V L Q+ T+PP+RYSE +L+K+LEELGIG PSTY
Sbjct: 605 EDDAVHQDNFEALSKLKVKDLMSPVNVHLAQNFTKPPSRYSESALIKRLEELGIGGPSTY 664
Query: 856 ASTLKVLQDRNYVTVKSRILYPEFRGRM-VSAFLSHYFSEVTDYSFTADMETELDNVSAG 914
+S +KVLQDRN+VTVK ++++PEFRGRM VSAFL+H+FSEV D SFTA++ETELDNVSAG
Sbjct: 665 SSIMKVLQDRNHVTVKGQVVHPEFRGRMLVSAFLTHHFSEVADLSFTANLETELDNVSAG 724
Query: 915 LTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGT 974
TEWKGLL D+W RF+ YC A L + +VE+MLE+ FG LF L N R CP C EGT
Sbjct: 725 STEWKGLLKDFWERFNKYCGNASRLQVRKVERMLEEKFGSILFPDLDNDSRICPSCSEGT 784
Query: 975 LIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEK 1034
L KVS+ G GYFIGC++HP+C YIA+TL + DE + + P+L+G P S EK
Sbjct: 785 LRLKVSKHGEGYFIGCDRHPKCKYIARTLSVEVDETEASDEIQSTFTPRLLGVLPDSDEK 844
Query: 1035 VLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQ 1094
V LK GPYG Y+Q+GED G KRA +S +KD+DSITLEDA+ELL+YP LG HP D
Sbjct: 845 VFLKQGPYGHYIQVGEDIKGVSRKRAPLSEVKDIDSITLEDAIELLQYPKILGKHPDDDL 904
Query: 1095 PIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKDVRRCGRPKGKPKREEA 1154
P+++ +++GF +RHRRT+A +PK+ P ++TLE+AL+ L+GK+V R GRPKG K E
Sbjct: 905 PVLVTHSKSGFRIRHRRTLAPLPKSADPKEITLERALKLLTGKNVIRFGRPKG-IKNPEP 963
Query: 1155 LE 1156
LE
Sbjct: 964 LE 965
>gi|2827516|emb|CAA16524.1| DNA topoisomerase like-protein [Arabidopsis thaliana]
gi|7270023|emb|CAB79839.1| DNA topoisomerase like-protein [Arabidopsis thaliana]
Length = 1179
Score = 1024 bits (2648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/970 (55%), Positives = 667/970 (68%), Gaps = 132/970 (13%)
Query: 186 SISVSEDVNAVNSTSEQLVGDGVEG--AKLGSSVSNTKQNSKPRARQQQQSRSKKKKEQL 243
++ S + V ST E ++GDG G A+L ++ S ++ + ++ KK E
Sbjct: 313 NVLASSEAEVVTST-EPVIGDGSSGIKAELSTAASPASNGNQATTVKSKRRPKNKKVEDK 371
Query: 244 SATVAS--EQASVGKSCKSVSQAKSSKCKSEQCADLTSE--KTSPGNTLEQPLASSALTK 299
S++V E S+ +S SV + K S + + + E K P + P S++ ++
Sbjct: 372 SSSVVPVLEAVSLDESPISVPKPKHSGSGNRKSSSAKKEVAKNHPVEEPKSPAPSNSKSE 431
Query: 300 QQSKKNSGNCGRKKKSAKATKASLQRQTSEEM--VIVPRGQNTQNPLYPPSGKSVVVVES 357
QQ KS KA+KA Q+ + M I RGQN PLYPPSGKSV+VVES
Sbjct: 432 QQ----------HLKSTKASKAPKQKLVPQHMKNSIEHRGQNASKPLYPPSGKSVIVVES 481
Query: 358 VTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVA 417
+TKAK+IQGYLGDMYEVLPSYGH+RDLA R
Sbjct: 482 MTKAKIIQGYLGDMYEVLPSYGHIRDLATR------------------------------ 511
Query: 418 LSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAA 477
AENLILASDPDREGEAIAWHI+EMLQQQ ALHE++TVARVVFHEITE++IK ALQ+
Sbjct: 512 ---AENLILASDPDREGEAIAWHIIEMLQQQGALHESMTVARVVFHEITESAIKSALQSP 568
Query: 478 REIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEF 537
REID +LV AYLARRALDYLIGFNISPLLWRKLPGC SAGRVQSAAL+L+CDRE EID F
Sbjct: 569 REIDGDLVHAYLARRALDYLIGFNISPLLWRKLPGCPSAGRVQSAALALVCDRESEIDGF 628
Query: 538 KPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANF 597
KPQEYWTV + K+ ++ +F AHLT SKRLNQLSI S A+DIEQ+I S F
Sbjct: 629 KPQEYWTVGIKVKGKD----NSATFSAHLTSLNSKRLNQLSISSEANAQDIEQRIKSEGF 684
Query: 598 QVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGL 656
++K +K S RKNP TPYITSTLQQDAANKL+FS +TMK+A
Sbjct: 685 -LVKGTKTSTTRKNPPTPYITSTLQQDAANKLHFSTAHTMKIA----------------- 726
Query: 657 ITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIR 716
DEA K+I+SL+ ERYG + + PRKYFKKVKNAQEAHEAIRPTDIR
Sbjct: 727 ------------DEAIKDIQSLVAERYGKNFT-SDSPRKYFKKVKNAQEAHEAIRPTDIR 773
Query: 717 RLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEF 776
RLP+ ++ LLD D LKLY+LIWSR +ACQM+PA++ QIQ+DIGNA ESI+FRSSCS+VEF
Sbjct: 774 RLPSTIASLLDADSLKLYTLIWSRAVACQMEPASIAQIQLDIGNASESIIFRSSCSKVEF 833
Query: 777 LGFQAAYEDVDAGAIRYKENEEN-DRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARY 835
LG+QA YED +A AI+ +N+++ +R E F L+SLK GD L +GEVELKQHHTQ P RY
Sbjct: 834 LGYQAVYEDPEAKAIKNNDNDQSSEREETFKTLSSLKDGDLLQIGEVELKQHHTQHPPRY 893
Query: 836 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEV 895
SEGSLVKKLEELGIGRPSTYAS +VLQ R YVT+K+R+LYPEFR RMVSAFL+HYF+E+
Sbjct: 894 SEGSLVKKLEELGIGRPSTYASIFRVLQHRKYVTIKNRVLYPEFRARMVSAFLTHYFTEI 953
Query: 896 TDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDS 955
TDYSFTADMETELDNVS G+TEWKGLL DYW+RFS+YC +++ Q+ +G
Sbjct: 954 TDYSFTADMETELDNVSGGVTEWKGLLRDYWTRFSAYCKRVENVQRSQL-------YGRH 1006
Query: 956 LFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQR 1015
L +F + +IAKTLYG+D++ED +
Sbjct: 1007 L------------------------KF------------QSKFIAKTLYGEDEDEDDPPK 1030
Query: 1016 NTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLED 1075
N V+EPKL+G HP + EKV+LK GPYG YVQLGED+ G+ PKRA+ +HIKDV+SITLE
Sbjct: 1031 NNCVEEPKLLGLHPNTSEKVILKCGPYGHYVQLGEDKKGHTPKRANAAHIKDVNSITLES 1090
Query: 1076 ALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLS 1135
ALELLRYP+ LG HP+DGQP++L+L+++GF+++HRR +A+VPKN +P +VTLE+A++ LS
Sbjct: 1091 ALELLRYPLTLGTHPEDGQPVVLKLSKSGFTIKHRRNMATVPKNTEPGEVTLERAMKLLS 1150
Query: 1136 GKDVRRCGRP 1145
GK+VR+ GRP
Sbjct: 1151 GKNVRKSGRP 1160
>gi|193848529|gb|ACF22718.1| DNA topoisomerase family [Brachypodium distachyon]
Length = 856
Score = 915 bits (2366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/834 (56%), Positives = 561/834 (67%), Gaps = 89/834 (10%)
Query: 343 PLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWE 402
PL+PP KSVVVVES TKAKVIQ YLGDMYEVLPSYGHVRDLA +S SVRPDDDFSMVWE
Sbjct: 62 PLHPPIAKSVVVVESATKAKVIQKYLGDMYEVLPSYGHVRDLAGKSRSVRPDDDFSMVWE 121
Query: 403 VPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVF 462
VPSAAWTHLKSI+VAL GAENLILASDPDREGEAIAWHI EML+QQ AL ++TVARVVF
Sbjct: 122 VPSAAWTHLKSIRVALKGAENLILASDPDREGEAIAWHIKEMLEQQKALGCHVTVARVVF 181
Query: 463 HEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSA 522
HEITE +IK AL R ID +LV AYLARR+LDYLIGF ISPLLWRKLPGC+SAGRVQSA
Sbjct: 182 HEITEDAIKNALMFPRYIDMDLVNAYLARRSLDYLIGFGISPLLWRKLPGCRSAGRVQSA 241
Query: 523 ALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSH 582
AL+L+ DRE EI++F PQEYWTV+ + S S + + H SK+L+QLSI S
Sbjct: 242 ALALVSDRETEIEQFSPQEYWTVDTDFKIRCSDSSKGLCLTSRIKHLNSKKLDQLSISSQ 301
Query: 583 TEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKL 642
EA+ IE++I S+ F+V AQKL
Sbjct: 302 EEARAIEKRIYSSQFEV---------------------------------------AQKL 322
Query: 643 YEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
YEG+ L A GLITY+RTDG HISD AA+++RSL+ ERYG +A E+ RKY KKVKN
Sbjct: 323 YEGISLSSEEATGLITYLRTDGFHISDGAAEDVRSLVKERYGEQYASED-VRKYLKKVKN 381
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
AQEAHEAIRPT IRRLP + L+ + W R +M IQVDIGN
Sbjct: 382 AQEAHEAIRPTSIRRLPFAYNF--------LWCVFWDRGWELKMVLGAYCHIQVDIGNPG 433
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
+ F SS S+++F G+QA Y+D +A E H+ F L+ L+ D + V
Sbjct: 434 GDMTFHSSASKLDFKGYQAVYDDTEASGSSENPEGEALHHDNFEALSKLEMKDLVSPVNV 493
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
L QH T+PP+RYSEG+L+KKLEELGIGRPSTYAS ++VLQDR YVT+KSR+L+PEFRGR
Sbjct: 494 HLGQHFTKPPSRYSEGALIKKLEELGIGRPSTYASIMRVLQDRKYVTIKSRVLHPEFRGR 553
Query: 883 MVSAFLSHYFSEVTDYSFTADMET------------------------------------ 906
MVSAFLSH+FSE+ DYSFTA+MET
Sbjct: 554 MVSAFLSHHFSEIADYSFTANMETEYGFRNQLKLAVYCHGISRYEIPGNQQVGKLVPREV 613
Query: 907 -----ELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLP 961
ELDNVSAG TEWKGLL DYW RFS YC A + +VE+MLE+ F LF L
Sbjct: 614 RQQWLELDNVSAGSTEWKGLLKDYWERFSKYCGDASQWDVRKVERMLEEKFRPILFPDLD 673
Query: 962 NKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDE 1021
+ R CP C EGTL FKVSRFG GYFIGC++HP+C YIA+TL +DDE + + E
Sbjct: 674 DASRICPSCSEGTLRFKVSRFGEGYFIGCDRHPKCKYIARTLSDEDDENEACEETKWNFE 733
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+L+G P EKV LK GPYG+Y+Q+GEDR G KRAS+S +K+VDSITLEDA+ELL+
Sbjct: 734 PRLLGVMPNLNEKVFLKQGPYGYYIQVGEDRKGISQKRASLSEVKNVDSITLEDAIELLQ 793
Query: 1082 YPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLS 1135
YP LG HP D P+++ ++AGFSVRHRRT+A +PKN +TLE AL+ L+
Sbjct: 794 YPKILGKHPDDEYPVLMTHSKAGFSVRHRRTVAPLPKNTDLKKITLECALKLLA 847
>gi|224099681|ref|XP_002334451.1| predicted protein [Populus trichocarpa]
gi|222872210|gb|EEF09341.1| predicted protein [Populus trichocarpa]
Length = 780
Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/795 (60%), Positives = 571/795 (71%), Gaps = 57/795 (7%)
Query: 35 LRPFMATH--RAFWNHQGIQLPPYPLIG---------SGLRFRKGRVTSAITISYPKVAC 83
RP MA R F N+ LP IG S ++ +K R++ I+I++ +
Sbjct: 21 FRPLMAKLQCRTFQNYPASHLP----IGTTCRNYMQCSQIKLKKDRLSFIISINHSQSLT 76
Query: 84 DFFLFSGRTDCSKGALSIHSHLKPRSSFCYMPLDNGIRFSSLNCEPFSKRCFSQLSRGKI 143
+ G S +I+SHL P S Y +NG +SL F+KR FS SRG
Sbjct: 77 N----GGSMSMSS---AINSHLSPGSLLNYWSFNNGNTLTSLESGVFAKRLFSTASRG-- 127
Query: 144 GIEKIGVSDARSGSGGGKSWFNKHRKRNNAVSA---RGKSNATSSSISVSEDVNAVNSTS 200
S+ ++ + GG F+KH K+ A A + ++N T+S IS S+DV+AV ST
Sbjct: 128 -------SNNKNQNVGG---FSKHWKKPKASGAAHDKDETN-TNSRISASKDVDAVTST- 175
Query: 201 EQLVGDGVEGAKLGSSVSNTK-QNSKPRARQQQQSRSKKKKEQLSATVASEQASVGKSCK 259
E VGD AKLGS+VS T+ + SK ++++S+SKK K + S T SE+A+ KS
Sbjct: 176 ETAVGD----AKLGSAVSRTRNKKSKVNETEKKESKSKKNKGEASFTAVSEKAAGAKSMT 231
Query: 260 SVSQAKSS-KCKSEQCADLTSEKTSPGNTLEQPLASSALTKQQSKKNSGNCGRKKKSAKA 318
+ SQ K S KS Q A S+K + T E P S TKQQS K +GN K+ + KA
Sbjct: 232 TTSQLKKSLPSKSGQVAARASQKKA---TEEMPNGS---TKQQSNKKNGNSSIKRTTKKA 285
Query: 319 TKASLQRQTSEEM-VIVPRGQNTQNPLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPS 377
S ++Q +++ + P Q LYP +GK VVVVESVTKAKVIQGYLGDMYEVLPS
Sbjct: 286 VNGSAEKQKPQKIGKLQPFAQGKLKSLYPSAGKCVVVVESVTKAKVIQGYLGDMYEVLPS 345
Query: 378 YGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAI 437
YGHVRDLAARSGSVRPDDDFS+VWEVPSAAWTHL SIKVALSGA+ LILASDPDREGEAI
Sbjct: 346 YGHVRDLAARSGSVRPDDDFSIVWEVPSAAWTHLNSIKVALSGAKILILASDPDREGEAI 405
Query: 438 AWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYL 497
AWHIVEMLQQQDAL +++TVARVVFHEITE SIK ALQA R ID NLV AYLARRALDYL
Sbjct: 406 AWHIVEMLQQQDALRQDLTVARVVFHEITETSIKNALQAPRGIDVNLVHAYLARRALDYL 465
Query: 498 IGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSL 557
IGFNISPLLWRKLPGCQSAGRVQSAALSL+CDREMEIDEF QEYWT+ A L K+E SL
Sbjct: 466 IGFNISPLLWRKLPGCQSAGRVQSAALSLLCDREMEIDEFNSQEYWTIGAKLKKQEQDSL 525
Query: 558 DTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYIT 617
AHLTHF SK+LNQ SI S TEAKD+EQKINSA+FQV+ + K R PTPYIT
Sbjct: 526 ----VNAHLTHFDSKKLNQFSISSDTEAKDMEQKINSADFQVVGSKKTKTHRNPPTPYIT 581
Query: 618 STLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRS 677
STLQQDAANKL+F+ +YTMK+AQKLYEGVQL DG A GLITY+RTDGLHISDEA IRS
Sbjct: 582 STLQQDAANKLDFATSYTMKVAQKLYEGVQLSDGKATGLITYLRTDGLHISDEAVGNIRS 641
Query: 678 LIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLI 737
LI ERYG A +GPRKYF+KVKNAQEAHEAIRPT+I LP+ML G+LDED LKLY+LI
Sbjct: 642 LIIERYGQDFA-SKGPRKYFRKVKNAQEAHEAIRPTNIHLLPSMLVGVLDEDSLKLYTLI 700
Query: 738 WSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENE 797
WSRT+ACQM+P T+ Q+QVDIGNA +SIVFRSSCSRVEF G+QA YEDV+AGA+RYKE++
Sbjct: 701 WSRTVACQMEPVTIEQVQVDIGNAGKSIVFRSSCSRVEFPGYQAVYEDVEAGAVRYKESD 760
Query: 798 ENDRHEAFAILNSLK 812
+R EAF IL+SLK
Sbjct: 761 ALNRQEAFGILDSLK 775
>gi|55297297|dbj|BAD69127.1| putative DNA topoisomerase I [Oryza sativa Japonica Group]
gi|55297350|dbj|BAD69191.1| putative DNA topoisomerase I [Oryza sativa Japonica Group]
Length = 896
Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/603 (66%), Positives = 476/603 (78%), Gaps = 3/603 (0%)
Query: 343 PLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWE 402
PLYPP+ KSV+VVESVTKAKVIQ YLGDMYEVLPSYGHVRDLA RS SVRPDDDFSMVWE
Sbjct: 289 PLYPPTAKSVLVVESVTKAKVIQKYLGDMYEVLPSYGHVRDLAGRSKSVRPDDDFSMVWE 348
Query: 403 VPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVF 462
VP+AAWTHLKSI+ AL GAENLILASDPDREGEAIAWHI EML+QQDAL +TVARVVF
Sbjct: 349 VPAAAWTHLKSIRTALKGAENLILASDPDREGEAIAWHIKEMLEQQDALGSKVTVARVVF 408
Query: 463 HEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSA 522
HEITE ++K AL + R ID +LV AYLARR+LDYLIGF ISPLLWRKLPGCQSAGRVQSA
Sbjct: 409 HEITEDAVKKALISPRYIDMDLVNAYLARRSLDYLIGFGISPLLWRKLPGCQSAGRVQSA 468
Query: 523 ALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSH 582
AL+L+CDRE EI++F PQEYWTV+ + S + + + + H SK+L+QLSI S
Sbjct: 469 ALALVCDREAEIEQFDPQEYWTVDTDFKTQHSGPSNGLNLQSRIKHLNSKKLDQLSIRSQ 528
Query: 583 TEAKDIEQKINSANFQVIKNSKRSMVRKN-PTPYITSTLQQDAANKLNFSATYTMKLAQK 641
EA +IE++I S+ F+V KRS + KN P PYITS+LQQDAANKL+FSA YTMK+AQK
Sbjct: 529 EEAHNIEKRIYSSQFEVT-GIKRSKINKNPPMPYITSSLQQDAANKLHFSAGYTMKVAQK 587
Query: 642 LYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVK 701
LYEG+ L A GLITY+RTDG HISD AA++I SL+ +RYG +A EG RKYFKKVK
Sbjct: 588 LYEGINLSSEEATGLITYIRTDGFHISDGAAEDILSLVKQRYGEEYA-SEGIRKYFKKVK 646
Query: 702 NAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNA 761
NAQEAHEAIRPT IRRLP+ L G LD+D LKLY+LIW RTMACQM+ + IQVDIGN+
Sbjct: 647 NAQEAHEAIRPTSIRRLPSSLVGALDDDSLKLYTLIWKRTMACQMEASRTDMIQVDIGNS 706
Query: 762 DESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGE 821
+ ++F SS SR++F G+QA Y+D +A Y + + F L+ L+ D +
Sbjct: 707 EGDMIFHSSASRLDFKGYQAVYDDTEASPSSYNSEVDAVHQDNFEALSKLEVKDLVSPVN 766
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRG 881
V L QH T+PP+RYSE +L+KKLEELGIGRPSTYAS +KVLQDR YVT+KSR+L+PEFRG
Sbjct: 767 VHLSQHFTKPPSRYSESALIKKLEELGIGRPSTYASIMKVLQDRKYVTIKSRVLHPEFRG 826
Query: 882 RMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI 941
RMVSAFL H+FSEV D SFTA+METELDNVSAG TEWKGLL D+W RF+ YC A L +
Sbjct: 827 RMVSAFLMHHFSEVADLSFTANMETELDNVSAGSTEWKGLLKDFWERFNKYCGDASRLDV 886
Query: 942 HQV 944
+V
Sbjct: 887 RKV 889
>gi|357436745|ref|XP_003588648.1| DNA topoisomerase [Medicago truncatula]
gi|355477696|gb|AES58899.1| DNA topoisomerase [Medicago truncatula]
Length = 682
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/569 (67%), Positives = 450/569 (79%), Gaps = 18/569 (3%)
Query: 302 SKKNSGNCGRKKKSAKATKASLQRQTSEEMVIVPRGQNTQNPLYPPSGKSVVVVESVTKA 361
++ +S + KKK + + L++Q G+ T PLYPP GKSV+VVESVTKA
Sbjct: 97 TQDSSASTRLKKKEVNSCQVDLEKQL---------GKFTGKPLYPPVGKSVMVVESVTKA 147
Query: 362 KVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGA 421
KVIQ YLGDMYEVLPSYGHVRDLA+RS SVRPDDDFSMVWEVPS+AWTHLKSI ALSGA
Sbjct: 148 KVIQRYLGDMYEVLPSYGHVRDLASRSESVRPDDDFSMVWEVPSSAWTHLKSINAALSGA 207
Query: 422 ENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREID 481
NLILASDPDREGEAIAWHI+EMLQQQ ALH NI +ARVVFHEITE SIK+ALQA REI+
Sbjct: 208 NNLILASDPDREGEAIAWHIIEMLQQQGALHNNIFLARVVFHEITEQSIKIALQAPREIN 267
Query: 482 ANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQE 541
NL+ AYLARRALDYLIGFNISPLLWRKLP CQS GRVQSAALSLICDRE+EID+FKP+E
Sbjct: 268 VNLIHAYLARRALDYLIGFNISPLLWRKLPSCQSVGRVQSAALSLICDRELEIDQFKPKE 327
Query: 542 YWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIK 601
YWT+EA+ + KE +F AHLTHF S +LNQ SI S EA+D+E KINSA F+V+
Sbjct: 328 YWTMEAMFNMKEQRLTKDLTFLAHLTHFNSNKLNQFSITSGREARDVESKINSAEFRVV- 386
Query: 602 NSKRSMVRKN-PTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYM 660
+ K S V+ N PTPYITSTLQQDAANKLNFSA++TM LAQKLYEGV+L +G GLITY+
Sbjct: 387 SMKISKVQSNPPTPYITSTLQQDAANKLNFSASHTMALAQKLYEGVELRNGITVGLITYI 446
Query: 661 RTDGLH------ISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTD 714
RTDGLH ISDEA IRSLI E YG H+ + P +YF KVKN QEAHEAIRPT+
Sbjct: 447 RTDGLHVGIPLVISDEAVANIRSLIIESYG-HNFVAQSPPQYFSKVKNEQEAHEAIRPTN 505
Query: 715 IRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRV 774
IR LP+ML+G+LDE+ LKLY+LIWSRT++CQM+PA + +IQV+ GN D SI+ RSS SRV
Sbjct: 506 IRNLPSMLAGVLDEESLKLYTLIWSRTVSCQMEPANLEKIQVEFGNVDRSIMLRSSSSRV 565
Query: 775 EFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPAR 834
EF G+Q + D+ A + ++++ ++ AF +LNSLK D L+L + +QHHTQPP R
Sbjct: 566 EFPGYQEVFTDIVTEAGQDRDSDGSNHGLAFEVLNSLKKEDLLHLVQTGARQHHTQPPPR 625
Query: 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQ 863
YSE SLVKKLE+LGIGRPSTYASTLKVL+
Sbjct: 626 YSEASLVKKLEDLGIGRPSTYASTLKVLK 654
>gi|302814137|ref|XP_002988753.1| hypothetical protein SELMODRAFT_427375 [Selaginella moellendorffii]
gi|300143574|gb|EFJ10264.1| hypothetical protein SELMODRAFT_427375 [Selaginella moellendorffii]
Length = 1020
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/1063 (41%), Positives = 612/1063 (57%), Gaps = 76/1063 (7%)
Query: 96 KGALSIHSHLKPRSSFCYMPLDNGIRFSSLNCEPFSKRCFSQLSRGKIGIEKIGVS---- 151
K + S+ S L SS ++P I ++C F S+G+ GI + G
Sbjct: 5 KASSSLFSRLLCSSSAAFLP---SIAPGRISCG-----IFESGSQGRWGIAQSGQKFVLY 56
Query: 152 ----DARSGSGGGKSWFNKHRKRNNAVSARGKSNATSSSISVSEDVNAVNSTSEQLVGDG 207
D S S + WF + K+ A++A ST+E G
Sbjct: 57 QFSRDFSSASS--RRWFRRKGKKGAALNA---------------------STAESQQTAG 93
Query: 208 VEGAKLGSSVSNTKQNSKPRARQQQQSRSKKKKEQLSATVASEQASVGKSCKSVSQAKSS 267
E S +K +KP Q KKK + V + + + K + +S+
Sbjct: 94 AENVAKKSPGRKSKGTAKPEEETQDPQAVDKKKARSKVAVEQKPSDATNATKKKKKNESN 153
Query: 268 KCKSEQCADLTSEKTSPGNTLEQPLASSALTKQQSKKNSGNCGRKKKSAKATKASLQRQT 327
K + + S + +P ++ L + K+ G+ KA + T
Sbjct: 154 ATKEDDGGKVKSAAKT-----TKPKDAAKLKPAKEVKDGGDLKEAPSKRSKKKAEVVAAT 208
Query: 328 SEEMVIVPRGQNTQNPLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAAR 387
+ + I Q L SGK VVVVES KAK I+ YLG+ Y V+ SYGHVRDLAAR
Sbjct: 209 TIDSTIETGEQENGAAL---SGKVVVVVESPAKAKTIEKYLGENYVVVASYGHVRDLAAR 265
Query: 388 SGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQ 447
SGSVRP DDF +VWEVP A + IK AL GA+ ++LASDPDREGEAIAWHI+EM++
Sbjct: 266 SGSVRPQDDFDLVWEVPDTAKSRFNQIKTALKGAQAMVLASDPDREGEAIAWHILEMIRL 325
Query: 448 QDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLW 507
+ + + + + RV F+EIT+ +++ +++ R I LV AYLARRALDYLIGF+ISPLLW
Sbjct: 326 EGIMKKGLKIQRVTFNEITKTAVQQGMKSPRNISQELVDAYLARRALDYLIGFDISPLLW 385
Query: 508 RKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLT 567
RKLPG +SAGRVQSAAL L+ DRE EI+ F P+EYWTVEA + +S SFPA L
Sbjct: 386 RKLPGSKSAGRVQSAALCLLADREKEIESFTPREYWTVEAEICPADSKG--QVSFPARLV 443
Query: 568 HFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKN-PTPYITSTLQQDAAN 626
+ +L+Q S+ + +EA+ I ++ +V K S++R+N P PYITS+LQQDA++
Sbjct: 444 SYNGVKLDQFSL-TGSEAEAAASYIGQSSLRV-DGMKNSVIRRNAPGPYITSSLQQDASS 501
Query: 627 KLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSH 686
KL F A+ TM LAQKLYEGV+LPDG GLITYMRTD + +S +A + IR ERYG +
Sbjct: 502 KLGFGASKTMLLAQKLYEGVKLPDGELVGLITYMRTDSMQLSAQAIESIRKFGEERYGKN 561
Query: 687 HAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQM 746
+ PRK+ KVKNAQEAHEAIRPT I R+P+ L+ +L++D L+LY+LIW RTMACQ+
Sbjct: 562 YV-LSSPRKFSSKVKNAQEAHEAIRPTGIERIPSELAKVLEQDALRLYALIWRRTMACQL 620
Query: 747 QPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFA 806
+ A + +D+ + + RS+ S +EF GFQ Y D DA A +E E +
Sbjct: 621 EQAVFNHVSLDVEDPKGVVRLRSTASTMEFPGFQIVYRDKDALAGDNEEEESATEKK--- 677
Query: 807 ILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRN 866
L SLK G + +V+ KQH T+PP RY+EGSLVKK+EELGIGRPSTYA LK LQ R
Sbjct: 678 -LPSLKAGSCVSAIDVKHKQHFTEPPPRYTEGSLVKKMEELGIGRPSTYAHVLKTLQLRQ 736
Query: 867 YVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYW 926
Y+ ++ + + P RGRMV+AFLS YF+E DY FTA ME +LD VS+G +WK +L +W
Sbjct: 737 YMQIEKQRIIPRVRGRMVAAFLSRYFTEFVDYGFTAKMEEQLDAVSSGSMKWKEVLQQFW 796
Query: 927 SRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGY 986
F T + QV ML F D L KD++CP C G L K+++FG GY
Sbjct: 797 PNFHDKVTSTAKVPTQQVADMLASLFSD----KLAGKDKTCPNCHTGELQLKLTKFGTGY 852
Query: 987 FIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEP------KLIGHHPASKEKVLLKSG 1040
F+GCN++P C+ Y + ++D + P K++G ++ VL K G
Sbjct: 853 FLGCNRYPSCH------YSNSLDKDEEEEEEECGSPVAKSRSKVLGVDSSTGLPVLYKEG 906
Query: 1041 PYGFYVQLGEDRTGYL-PKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLR 1099
PYG YVQ+GED G L PKR V + ++ TLE A+EL++YP LG P +G+P+M+
Sbjct: 907 PYGDYVQIGEDAKGKLKPKRVRVPESINYNAFTLEMAMELMKYPKELGVDP-EGKPVMIG 965
Query: 1100 LARAGFSVRHRRTIASVPKNMKPNDVTLEKALE-FLSGKDVRR 1141
+ R G +R VPK+ K ++TLE AL+ F+ GK+ RR
Sbjct: 966 IGRFGCYIRREGYSVYVPKDQKVEELTLEMALDIFVKGKEDRR 1008
>gi|302809206|ref|XP_002986296.1| hypothetical protein SELMODRAFT_123748 [Selaginella moellendorffii]
gi|300145832|gb|EFJ12505.1| hypothetical protein SELMODRAFT_123748 [Selaginella moellendorffii]
Length = 795
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/803 (49%), Positives = 525/803 (65%), Gaps = 29/803 (3%)
Query: 348 SGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAA 407
SGK VV+VES KAK I+ YLG+ Y V+ SYGHVRDLAARSGSVRP DDF +VWEVP A
Sbjct: 1 SGKVVVLVESPAKAKTIEKYLGENYVVVASYGHVRDLAARSGSVRPQDDFDLVWEVPDTA 60
Query: 408 WTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITE 467
+ IK AL GA+ ++LASDPDREGEAIAWHI+EM++ + + + + + RV F+EIT+
Sbjct: 61 KSRFNQIKTALKGAQAMVLASDPDREGEAIAWHILEMIKLEGIMKKGLKIQRVTFNEITK 120
Query: 468 ASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLI 527
+++ +++ R I LV AYLARRALDYLIGF+ISPLLWRKLPG +SAGRVQSAAL L+
Sbjct: 121 TAVQQGMKSPRNISQELVDAYLARRALDYLIGFDISPLLWRKLPGSKSAGRVQSAALCLL 180
Query: 528 CDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 587
DRE EI+ F P+EYWTVEA + +S SFPA L + +L+Q S+ + +EA+
Sbjct: 181 ADREKEIESFTPREYWTVEAEICPADSKG--QVSFPARLVSYNGVKLDQFSL-TGSEAEA 237
Query: 588 IEQKINSANFQVIKNSKRSMVRKN-PTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
I ++ +V K S+VR+N P PYITS+LQQDA++KL F A+ TM LAQKLYEGV
Sbjct: 238 AASYIGQSSLKV-DGMKNSVVRRNAPGPYITSSLQQDASSKLGFGASKTMLLAQKLYEGV 296
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+LPDG GLITYMRTD + +S +A + IR ERYG ++ PRK+ KVKNAQEA
Sbjct: 297 KLPDGELVGLITYMRTDSMQLSAQAIESIRKFGEERYGKNYV-LSSPRKFSSKVKNAQEA 355
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT I R+P+ L+ +L++D L+LY+LIW RTMACQ++ A + +D+ + +
Sbjct: 356 HEAIRPTGIERIPSELAKVLEQDALRLYALIWRRTMACQLEQAVFNHVSLDVEDPKGVVR 415
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
RS+ S +EF GFQ Y D DA A + E++ L SLK G + +V+ KQ
Sbjct: 416 LRSTASTMEFPGFQIVYRDKDALA----GDNEDEESATEKKLPSLKAGSCVSAIDVKHKQ 471
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RY+EGSLVKK+EELGIGRPSTYA LK LQ R Y+ ++ + + P RGRMV+A
Sbjct: 472 HFTEPPPRYTEGSLVKKMEELGIGRPSTYAHVLKTLQLRQYMQIEKQRIIPRVRGRMVAA 531
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS YF+E DY FTA ME +LD VS+G +WK +L +W F T + QV
Sbjct: 532 FLSRYFTEFVDYGFTAKMEEQLDAVSSGSMKWKEVLQQFWPNFHDKVTSTAKVPTQQVAD 591
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
ML F D L KD++CP C G L K+++FG GYF+GCN++P C+ Y +
Sbjct: 592 MLASLFSD----KLAGKDKTCPNCHTGELQLKLTKFGTGYFLGCNRYPSCH------YSN 641
Query: 1007 DDEEDTLQRNTNVDEP------KLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYL-PKR 1059
++D + P K++G ++ VL K GPYG YVQ+GED G L PKR
Sbjct: 642 SLDKDEEEEEEECGSPVAKSRSKVLGVDSSTGLPVLYKEGPYGDYVQIGEDAKGKLKPKR 701
Query: 1060 ASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKN 1119
V + ++ TLE A+EL++YP LG P +G+P+M+ + R G +R VPK+
Sbjct: 702 VRVPESINYNAFTLEMAMELMKYPKELGVDP-EGKPVMIGIGRFGCYIRREGYSVYVPKD 760
Query: 1120 MKPNDVTLEKALE-FLSGKDVRR 1141
K ++TLE AL+ F+ GK+ RR
Sbjct: 761 QKVEELTLEMALDIFVKGKEDRR 783
>gi|296081804|emb|CBI20809.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/518 (73%), Positives = 418/518 (80%), Gaps = 35/518 (6%)
Query: 273 QCADLTS----EKTSPGNTLEQPLASSALTKQQSKKNSGNCGRKKKSAKATKASLQRQTS 328
C LT+ + S GN + L SS TK QSKK +G+ +K KS K S ++QT
Sbjct: 12 HCNILTNTAVFQNNSTGNKPVEALDSSVSTKSQSKKATGSSNKKGKSPKVANESPKKQTV 71
Query: 329 EEM-VIVPRGQNTQNPLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAAR 387
M I Q LYP SGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLA R
Sbjct: 72 HTMGKIKSLEQRPLKKLYPSSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAGR 131
Query: 388 SGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQ 447
SGSVRPDDDFSMVWEVPSAAWTHLKSIKVAL GAENLILASDPDREGEAIAWHI+EML Q
Sbjct: 132 SGSVRPDDDFSMVWEVPSAAWTHLKSIKVALGGAENLILASDPDREGEAIAWHIIEMLLQ 191
Query: 448 QDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLW 507
QDALH+++TVARVVFHEITE+SIK AL A REID NLV AYLARRALDYLIGFNISPLLW
Sbjct: 192 QDALHKDLTVARVVFHEITESSIKSALDAPREIDVNLVHAYLARRALDYLIGFNISPLLW 251
Query: 508 RKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLT 567
RKLPGCQSAGRVQSAAL+LICDREMEIDEFKPQEYWTVE
Sbjct: 252 RKLPGCQSAGRVQSAALALICDREMEIDEFKPQEYWTVE--------------------- 290
Query: 568 HFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKN-PTPYITSTLQQDAAN 626
LNQ SI SHTEAK IEQ+INS F+VI SKR+ +RKN PTPYITSTLQQDAAN
Sbjct: 291 ------LNQFSISSHTEAKAIEQEINSLEFKVI-GSKRNKMRKNPPTPYITSTLQQDAAN 343
Query: 627 KLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSH 686
KL+FSA YTMKLAQ+LYEGVQL DG AAGLITYMRTDGLH+SDEAAK+IRSL+ ERYGS+
Sbjct: 344 KLHFSAMYTMKLAQRLYEGVQLSDGKAAGLITYMRTDGLHVSDEAAKDIRSLVAERYGSN 403
Query: 687 HAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQM 746
A +G RKYFKKVKNAQEAHEAIRPTDI+RLP+ML+G+LDED LKLY+LIWSRTMACQM
Sbjct: 404 LA-SDGVRKYFKKVKNAQEAHEAIRPTDIQRLPSMLAGVLDEDSLKLYTLIWSRTMACQM 462
Query: 747 QPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYE 784
+PAT+ QIQVDIGNA+ES+VFRS+CS VEF G+QA Y+
Sbjct: 463 EPATIDQIQVDIGNANESVVFRSTCSGVEFFGYQAVYK 500
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 286/415 (68%), Positives = 331/415 (79%), Gaps = 7/415 (1%)
Query: 744 CQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAA------YEDVDAGAIRYKENE 797
C+ V +++V + N + F S + + A + DV+A AIR ENE
Sbjct: 599 CKEIELLVLKLKVSVKNLRLGLFFHCSLLGMGKILLDAVLLSFKLHSDVEAKAIRVDENE 658
Query: 798 ENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYAS 857
N+R E F L+SLK GDPLYL +EL+QHHT PP+RYSEG+LVKKLEELGIGRPSTYA
Sbjct: 659 GNERGEVFKALSSLKAGDPLYLSLLELEQHHTLPPSRYSEGALVKKLEELGIGRPSTYAI 718
Query: 858 TLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTE 917
T+KVLQDRNYVTVK+R+LYPEFRGRMVSAFLSH+FSEVTDYSFTADMETELDNVSAGLTE
Sbjct: 719 TMKVLQDRNYVTVKNRVLYPEFRGRMVSAFLSHHFSEVTDYSFTADMETELDNVSAGLTE 778
Query: 918 WKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIF 977
WKGLL DYW+RFS YC ++HIHQVEKMLEK FGD LF+ LP+K R+CP C EGTLIF
Sbjct: 779 WKGLLKDYWTRFSMYCNRVSNVHIHQVEKMLEKKFGDFLFSFLPDKSRTCPSCMEGTLIF 838
Query: 978 KVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLL 1037
KVSRFG+GYFIGC+QHP+C YIAK L GDDDEE Q T +EPK +G P S EK+LL
Sbjct: 839 KVSRFGSGYFIGCDQHPKCKYIAKMLDGDDDEEVASQDKT-FEEPKALGLSPGSSEKILL 897
Query: 1038 KSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIM 1097
K+GPYGFY+QLGEDR GYLPKRASVSHIKDV SITLEDALELLRYPV LGNHP D P++
Sbjct: 898 KNGPYGFYLQLGEDRKGYLPKRASVSHIKDVGSITLEDALELLRYPVTLGNHPNDDHPVV 957
Query: 1098 LRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKDVRRCGRPKGKPKRE 1152
L+LA+ GFS+RHRRTIA VPKN+KPND+TLEKAL+ L GKDV++ GRPK K K+E
Sbjct: 958 LKLAKNGFSIRHRRTIAPVPKNIKPNDITLEKALKLLLGKDVKQSGRPKNKKKQE 1012
>gi|358347436|ref|XP_003637763.1| DNA topoisomerase [Medicago truncatula]
gi|355503698|gb|AES84901.1| DNA topoisomerase [Medicago truncatula]
Length = 1049
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/792 (48%), Positives = 507/792 (64%), Gaps = 67/792 (8%)
Query: 312 KKKSAKATKASLQRQTSEEM-VIVPRGQNTQNPLYPPSGKSVVVVESVTKAKVIQGYLGD 370
K+K + K +R E+ +P + T LYPP GKSVVVVES+ KA+ I+ YLG
Sbjct: 81 KRKPPELIKDGKRRYVMTELETTLPSLRFTGKSLYPPVGKSVVVVESLDKARTIRSYLGG 140
Query: 371 MYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDP 430
MYEVL G V DL S D+DF + WE+ +++ T +K I AL G NLI A DP
Sbjct: 141 MYEVLSCNGLVMDLDPGQNSASLDNDFCLFWEISNSSQTRVKRISAALKGVNNLIFAFDP 200
Query: 431 DREGEAIAWHIVEMLQQQD-ALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYL 489
EGE IAW I+ +L+++ +L E+I +ARVVF+EITE SIK ALQ REID NLV +YL
Sbjct: 201 SPEGETIAWQIIHILRKKHRSLQEDILLARVVFNEITEQSIKAALQEPREIDMNLVNSYL 260
Query: 490 ARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVL 549
A+R +D+L GFNISPL+ RKLP C+S R + ALSL+CDRE EI+ F+ +EYWT+ L
Sbjct: 261 AKRVIDFLFGFNISPLVLRKLPSCKSPRRFEFPALSLLCDRESEINSFRSREYWTLYPQL 320
Query: 550 DKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVR 609
+ F LTH S+ LN+ S+ S EA +I+ +I SA FQVI ++ + +
Sbjct: 321 QRTNRD----LPFRTLLTHIDSRELNKFSVASVEEANEIQSRIYSAQFQVIGITRSKISK 376
Query: 610 KNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISD 669
+PTPY TSTLQQDAA LNFS++ TMK+A+KLYEGV+ AGLIT TDGLHIS+
Sbjct: 377 MSPTPYSTSTLQQDAARILNFSSSITMKIARKLYEGVKFHKNIRAGLITCFITDGLHISE 436
Query: 670 EAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDED 729
EA +IRS+I +RYG + + P K VKNA E+HEAIRPTDIR+LP+ML+G+LD++
Sbjct: 437 EAVSDIRSVIIQRYGQNFVAQSPPENVIK-VKNALESHEAIRPTDIRKLPSMLAGVLDKE 495
Query: 730 CLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAG 789
LKLY+LIW RT++CQM+PA + +IQVDIGN+D+SI+ RS+ SRVEF G++ + +
Sbjct: 496 SLKLYTLIWFRTISCQMEPAILEKIQVDIGNSDQSILLRSASSRVEFPGYRTVFTGIVTE 555
Query: 790 AIRYKENEENDRHEAFAI-------------------LNSLKTGDPLYLGEVELKQHHTQ 830
+Y+++++++ AF I L+S+K D ++ ++E QHH+Q
Sbjct: 556 DGQYRDSDDSNHDLAFGIEEGQYRDSDRSNHDLDFDMLSSVKREDVFHVVQIEAGQHHSQ 615
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYS SLV KL+E+GIGR ++YA TL+ LQD NYV VK+ +L P+FRGR VSAFLSH
Sbjct: 616 PPQRYSVASLVNKLDEIGIGRAASYAQTLQGLQDGNYVKVKNCVLTPKFRGRAVSAFLSH 675
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+FSEVTDYS TA ME ELDNVSAG T WK L+ DY +RF + C ++HI QVE+ML+
Sbjct: 676 HFSEVTDYSSTAAMEFELDNVSAGTTNWKSLVRDYSTRFKTCCERTSNVHIRQVEEMLQN 735
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRF-GAGYFIGCNQHPRCN------------ 997
F D LF SLP++ R CP C EGTL FKV R AGY IGC+QHPRC
Sbjct: 736 KFADYLFGSLPDQSRLCPSCMEGTLTFKVRRLSAAGYCIGCDQHPRCTLWFGFILRWVKT 795
Query: 998 --------------------------YIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPAS 1031
Y KTLY D++EEDT Q NT +EPK + + AS
Sbjct: 796 SGVLGVNWIENCPTEVETNKAIGQTKYTGKTLYSDEEEEDTPQPNTIREEPKSMTNSLAS 855
Query: 1032 --KEKVLLKSGP 1041
+ V L S P
Sbjct: 856 IARMNVNLHSFP 867
>gi|218197974|gb|EEC80401.1| hypothetical protein OsI_22539 [Oryza sativa Indica Group]
Length = 888
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/602 (60%), Positives = 429/602 (71%), Gaps = 62/602 (10%)
Query: 343 PLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWE 402
PLYPP+ KSV+VVESVTKAKVIQ YLGDMYEVLPSYGHVRDLA RS SVRPDDDFSMVWE
Sbjct: 289 PLYPPTAKSVLVVESVTKAKVIQKYLGDMYEVLPSYGHVRDLAGRSKSVRPDDDFSMVWE 348
Query: 403 VPSAAWTHLKSIKVALSG------AENLILASDPDREGEAIAWHIVEMLQQQDALHENIT 456
VP+AAWTHLKSI+ AL G AENLILASDPDREGEAIAWHI EML+QQDAL +T
Sbjct: 349 VPAAAWTHLKSIRTALKGYDNAVWAENLILASDPDREGEAIAWHIKEMLEQQDALGSKVT 408
Query: 457 VARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSA 516
VARVVFHEITE ++K AL + R ID +LV AYLARR+LDYLIGF ISPLLWRKLPGCQSA
Sbjct: 409 VARVVFHEITEDAVKKALISPRYIDMDLVNAYLARRSLDYLIGFGISPLLWRKLPGCQSA 468
Query: 517 GRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQ 576
GRVQSAAL+L+CDRE EI++F PQEYWTV+ + S + + + + H SK+L+Q
Sbjct: 469 GRVQSAALALVCDREAEIEQFDPQEYWTVDTDFKTQHSGPSNGLNLQSRIKHLNSKKLDQ 528
Query: 577 LSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKN-PTPYITSTLQQDAANKLNFSATYT 635
LSI S EA +IE++I S+ F+V KRS + KN P PYITS+LQQDAANKL+FSA YT
Sbjct: 529 LSIRSQEEAHNIEKRIYSSQFEVT-GIKRSKINKNPPMPYITSSLQQDAANKLHFSAGYT 587
Query: 636 MKLAQKLYEGVQLPDGTAAGLITYMRTDGLH----------------------------- 666
MK+AQKLYEG+ L A GLITY+RTDG H
Sbjct: 588 MKVAQKLYEGINLSSEEATGLITYIRTDGFHWYQSARGQCVFLCSRVRGGIEEALACLAC 647
Query: 667 ------------------------ISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
ISD AA++I SL+ +RYG +A EG RKYFKKVKN
Sbjct: 648 EQLSAAQATIIAAHDNRIVANSIFISDGAAEDILSLVKQRYGEEYA-SEGIRKYFKKVKN 706
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
AQEAHEAIRPT IRRLP+ L G LD+D LKLY+LIW RTMACQM+ + IQVDIGN++
Sbjct: 707 AQEAHEAIRPTSIRRLPSSLVGALDDDSLKLYTLIWKRTMACQMEASRTDMIQVDIGNSE 766
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
++F SS SR++F G+QA Y+D +A Y + + F L+ L+ D + V
Sbjct: 767 GDMIFHSSASRLDFKGYQAVYDDTEASPSSYNSEVDAVHQDNFEALSKLEVKDLVSPVNV 826
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
L QH T+PP+RYSE +L+KKLEELGIGRPSTYAS +KVLQDR YVT+KSR+L+PEFRGR
Sbjct: 827 HLSQHFTKPPSRYSESALIKKLEELGIGRPSTYASIMKVLQDRKYVTIKSRVLHPEFRGR 886
Query: 883 MV 884
MV
Sbjct: 887 MV 888
>gi|357436741|ref|XP_003588646.1| DNA topoisomerase, partial [Medicago truncatula]
gi|355477694|gb|AES58897.1| DNA topoisomerase, partial [Medicago truncatula]
Length = 671
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/643 (57%), Positives = 441/643 (68%), Gaps = 101/643 (15%)
Query: 340 TQNPLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSM 399
T P + P G ++ + + +VIQ LG++ EVLP G++
Sbjct: 9 TGKPWFHPWG-NMEWLGVFWRGRVIQRSLGEILEVLPMSGYL------------------ 49
Query: 400 VWEVPSAAWTHLKSIKVAL-SGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVA 458
+K I L A NLILASDPDREGEAIAWHI+EMLQQQ ALH NI +A
Sbjct: 50 ----------CVKLINFMLFHRANNLILASDPDREGEAIAWHIIEMLQQQGALHNNIFLA 99
Query: 459 RVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGR 518
RVVFHEITE SIK ALQA REI+ NLV AYLARRALDYLIGFNISPLLWRKLP CQSAGR
Sbjct: 100 RVVFHEITEQSIKTALQAPREINVNLVHAYLARRALDYLIGFNISPLLWRKLPSCQSAGR 159
Query: 519 VQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLS 578
VQSAALSLICDRE+EID+FKP+EYWT+EA+ + KE +F AHLTHF S +LNQ S
Sbjct: 160 VQSAALSLICDRELEIDQFKPKEYWTMEAMFNMKEQRLTKDLTFLAHLTHFNSNKLNQFS 219
Query: 579 IGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKL 638
I S EA+DIE KINSA+F+VI + + RK PTPYITSTLQQDAANKLNFSA++TMKL
Sbjct: 220 IISGEEARDIESKINSADFRVISMKRNKVRRKPPTPYITSTLQQDAANKLNFSASHTMKL 279
Query: 639 AQKLYEGVQLPDGTAAGLITYMRTDGLH------ISDEAAKEIRSLIFER---------- 682
AQKLYEGV+L G +AGLITY+RTDGLH ISD+A IRSLI ER
Sbjct: 280 AQKLYEGVELTSGISAGLITYIRTDGLHVGIPLVISDDAVANIRSLIIERQEGCVLSNLG 339
Query: 683 -----------------------------------------YGSHHAPEEGPRKYFKKVK 701
YG + + P KYFKKVK
Sbjct: 340 SMAYLKNFHSSRGQSPRPKSSHHSHKSHRNLPVATATWASMYGQNFVAQSPP-KYFKKVK 398
Query: 702 NAQEAHEAIRPTDIRRLP-------------AMLSGLLDEDCLKLYSLIWSRTMACQMQP 748
NAQEAHEAIRPTDIR+LP AML+G+LDE+ LKLY+LIWSRT++CQM+
Sbjct: 399 NAQEAHEAIRPTDIRKLPWPQLTILILVDLSAMLAGVLDEESLKLYTLIWSRTVSCQMEQ 458
Query: 749 ATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAIL 808
A + +IQ+D+GNAD+SIV RS+ SRVEF G++A + D+ A R ++++ ++ AF +L
Sbjct: 459 AVLEKIQLDVGNADQSIVLRSASSRVEFPGYRAVFTDIVTEAGRDRDSDGSNHDLAFEVL 518
Query: 809 NSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYV 868
NSLKT D L+L + E QHHTQPP RYSE SLVKKLEELGIGRPSTYASTLKVL+DRNYV
Sbjct: 519 NSLKTDDLLHLVQTEASQHHTQPPPRYSEASLVKKLEELGIGRPSTYASTLKVLKDRNYV 578
Query: 869 TVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNV 911
TVKSR++ PEFRGRMVSAFLSH+FSEVTDY+FTADMETE+ +
Sbjct: 579 TVKSRVISPEFRGRMVSAFLSHHFSEVTDYNFTADMETEVSTM 621
>gi|168037859|ref|XP_001771420.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677338|gb|EDQ63810.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 590
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/596 (56%), Positives = 431/596 (72%), Gaps = 7/596 (1%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
KSVVVVES +KAK I YLG Y VLPSYGHVRDLAAR+GSVRPD+DF+M+WEVPS A
Sbjct: 1 KSVVVVESPSKAKTITKYLGAGYTVLPSYGHVRDLAARAGSVRPDEDFNMLWEVPSTARP 60
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ SIK AL GA+ L+LASDPDREGEAIAWH++E+L + AL + + V RVVFHEIT+ +
Sbjct: 61 HINSIKSALKGAQVLVLASDPDREGEAIAWHVLEILAVEGALKKEMQVKRVVFHEITKTA 120
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+ A+ +AR++ LV AYLARRALDYLIGFN+SP+LWRKLPG +SAGRVQSAAL LICD
Sbjct: 121 VTRAMDSARDVSETLVNAYLARRALDYLIGFNLSPVLWRKLPGSKSAGRVQSAALRLICD 180
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F+ +EYW++EA L K + S + A LTH K+L Q SIG+ +A
Sbjct: 181 REHEIEAFRSREYWSIEAQLKKGGTQS----TISARLTHLNGKKLEQFSIGNEVDAGAAS 236
Query: 590 QKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+K++ A I + K+ +VR+NP PYITSTLQQDA++KL F T TM LAQ+LYEGV+L
Sbjct: 237 KKVSEAKLS-IGSVKKRLVRRNPLAPYITSTLQQDASSKLGFGTTRTMSLAQQLYEGVKL 295
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G GLITYMRTDG+ IS EA ++IRSL RYG ++ P E R + KVKNAQEAHE
Sbjct: 296 NSGEQTGLITYMRTDGVQISPEALEDIRSLACTRYGDNYVPAE-KRVFVSKVKNAQEAHE 354
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPTDI RLP+ ++ +L+ED L+LYSLIW+RTMACQ++PA QI D+ + +++ R
Sbjct: 355 AIRPTDIFRLPSSVANVLEEDALQLYSLIWARTMACQLEPAVSNQISADVVDDHQNVQLR 414
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+S S + F GF Y+D A ++ +++D + + L+ ++ GDPL L V+ QH
Sbjct: 415 ASKSAISFPGFLVVYKDAKALGKFVEKLQDDDNNGPNSDLDQIEAGDPLVLSGVQPIQHF 474
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP R+SEG++VK LEELGIGRPSTYA TL+ LQ RNYV + R ++PE RGRMVSAFL
Sbjct: 475 TEPPPRFSEGTIVKHLEELGIGRPSTYAPTLRTLQLRNYVRIDKRRIFPETRGRMVSAFL 534
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV 944
H F E DY+FTA+ME++LD+VSAG WK +L D+W F A + I +V
Sbjct: 535 MHNFPEFADYAFTANMESQLDDVSAGNALWKNVLRDFWPGFHESVQNAMKVPIEKV 590
>gi|449522921|ref|XP_004168474.1| PREDICTED: DNA topoisomerase 1-like, partial [Cucumis sativus]
Length = 572
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/494 (67%), Positives = 396/494 (80%), Gaps = 11/494 (2%)
Query: 297 LTKQQSKKNSGNCGRKKKSAKATKASLQRQTSEEMVIVPRG----QNTQNPLYPPSGKSV 352
+++S K + RKK+ ATK++ + + +V+ RG + T LYPP GKSV
Sbjct: 84 FNQKKSNKQKRSSSRKKE---ATKSANKLRQKPHVVVDARGTSQVRTTFKQLYPPMGKSV 140
Query: 353 VVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLK 412
V+VESV KAKVIQ YLGDM+ VLPS+GHVRDLAARSGSVRPDDDF MVWEVPSAAWTHLK
Sbjct: 141 VIVESVAKAKVIQNYLGDMFVVLPSHGHVRDLAARSGSVRPDDDFIMVWEVPSAAWTHLK 200
Query: 413 SIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKV 472
SI+++L+GAENLILASDPD+EGEAIAWHI+EMLQ Q++LHE I++ARVVFHEITEASIK
Sbjct: 201 SIELSLNGAENLILASDPDQEGEAIAWHIIEMLQHQNSLHEGISIARVVFHEITEASIKS 260
Query: 473 ALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREM 532
ALQ+ R ID NLVQAYLARRALDYLIGFNISPLLW+KLPGC+S GRVQSAAL+LICDRE
Sbjct: 261 ALQSPRVIDENLVQAYLARRALDYLIGFNISPLLWKKLPGCRSPGRVQSAALALICDRET 320
Query: 533 EIDEFKPQEYWTVEAVLDKKE-SHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EIDEF QEYWT++ L++K S+ F+ PAHLTHF K+LNQL+I S+ EAK+IE
Sbjct: 321 EIDEFHAQEYWTIDIKLNQKNPCSSVGDFAVPAHLTHFDFKKLNQLAISSNMEAKNIETA 380
Query: 592 INSANFQVIKNSKRSMVRKN-PTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S NFQV+ +SK+S+V+ N P PYITSTLQQDAANK NF A+YTM+LAQKLYEG+QL D
Sbjct: 381 LKSVNFQVL-SSKKSIVQTNPPMPYITSTLQQDAANKFNFPASYTMQLAQKLYEGIQLAD 439
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AAGLITY RTDGLHISDEA K+I SLI +RYG + G KYFKKV AQEA EAI
Sbjct: 440 GKAAGLITYPRTDGLHISDEAVKDIHSLIMQRYGQDFVSKSG-HKYFKKVNKAQEADEAI 498
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD++ LP+ML G+LDED KLYSLIW RTMACQM+P+ QI++D G DESIV S+
Sbjct: 499 RPTDVQLLPSMLVGILDEDSHKLYSLIWLRTMACQMEPSISEQIEIDCGLTDESIVSGST 558
Query: 771 CSRVEFLGFQAAYE 784
CSRV+F GFQ +E
Sbjct: 559 CSRVQFRGFQDIFE 572
>gi|344924715|ref|ZP_08778176.1| DNA topoisomerase I subunit omega [Candidatus Odyssella
thessalonicensis L13]
Length = 801
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/816 (44%), Positives = 503/816 (61%), Gaps = 36/816 (4%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
KSVVVVES KAK I YLG+ Y VL SYGH+RDL +++GSV PD DF MVWE+ A
Sbjct: 2 KSVVVVESPAKAKTINRYLGNDYIVLASYGHIRDLPSKNGSVDPDHDFKMVWEMQDRAKN 61
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ I A+ GA+ L+LA+DPDREGEAI+WH+ ++L ++ AL V R+VFHEIT+ +
Sbjct: 62 KVNEILKAVKGADQLLLATDPDREGEAISWHVQQVLNEKKALVGK-EVKRIVFHEITKGA 120
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A+Q REID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LI +
Sbjct: 121 IQNAIQHPREIDKKLVSAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLIVE 180
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F QEYW++EA L + + A LTH K+L++L++ + +A+
Sbjct: 181 REQEIEAFITQEYWSIEAALLNAAGQA-----YKARLTHLHGKKLDKLALKTEVDAQAAC 235
Query: 590 QKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
I S +F +I ++ V++NP P+ TSTLQQ+AA KL FSA+ TM++AQ+LYEGV++
Sbjct: 236 AAIRSRSF-LIGEVEKKQVKRNPAAPFTTSTLQQEAARKLGFSASRTMQVAQRLYEGVEI 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G GLITYMRTD + IS+EA E+R I YGS + P PR + K KNAQEAHE
Sbjct: 295 -QGGLTGLITYMRTDSIAISNEAITEMRQHIDSVYGSKYLPS-SPRVFKSKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
A+RPT + R P + LD+ KLY LIW RT+A QM+ A Q+ VDI + D ++ R
Sbjct: 353 AVRPTSVLRRPEDVRAYLDDSHYKLYELIWKRTVASQMETALFDQVGVDILSEDRQVILR 412
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S + F GF Y + K++ D E +L L G+ + +V QH
Sbjct: 413 ATGSTMTFDGFMRLY-------LEGKDDASGDEDEE-RLLPPLTEGEAAPIQQVTPNQHF 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RYSE SLVKKLEELGIGRPSTYAS ++VLQDR+YV ++ R P RGR+V++FL
Sbjct: 465 TQPPPRYSEASLVKKLEELGIGRPSTYASIIQVLQDRDYVQLEKRQFIPAERGRLVTSFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+++F +Y FTA++E +LD++S G WK +L +W F QSL + +V L
Sbjct: 525 TNFFKRYVEYDFTANLEEQLDDISNGAVAWKEVLTQFWGSFKQTTDSTQSLTMTEVIDSL 584
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
EK LF R CP C +G L K+SR+GA F+GC+ +P C Y K L GD
Sbjct: 585 EKDLSHHLFHG-DEASRVCPQCQKGRLSLKLSRYGA--FLGCSDYPECKY-TKPLSGDTP 640
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDR-------------TGY 1055
E + + DEPK+IGH P + E++ L+ GPYG Y+Q GE + +
Sbjct: 641 EGEGDEPPIVQDEPKVIGHDPDTGEEITLRKGPYGPYLQWGEAKASPDKEKQKKGKASAG 700
Query: 1056 LPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIAS 1115
PKR ++ + +S+T E A+ L P +G HP G+ + + + R G V+ T AS
Sbjct: 701 KPKRVALPAGFNPESVTFETAMALKALPKTVGPHPDTGEIMSISIGRFGPYVKCGSTFAS 760
Query: 1116 VPKNMKPNDVTLEKALEFLSGKDVRRC-GRPKGKPK 1150
+PK+ +TLE+A E ++ K + GR G+ K
Sbjct: 761 IPKSEDMFAITLERAAELVTQKQNKPASGRSFGRKK 796
>gi|163792864|ref|ZP_02186840.1| DNA topoisomerase I [alpha proteobacterium BAL199]
gi|159181510|gb|EDP66022.1| DNA topoisomerase I [alpha proteobacterium BAL199]
Length = 893
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/810 (45%), Positives = 501/810 (61%), Gaps = 41/810 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD Y VL SYGH+RDL + GSV PD DF+M+W++ A +
Sbjct: 4 VVVVESPAKAKTINKYLGDDYYVLASYGHIRDLPPKDGSVDPDQDFAMLWQIDPRAEKQV 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL GA LILA+DPDREGEAI+WH+ ++L+++ AL + I V RV F+EIT++++
Sbjct: 64 KAIAEALKGATQLILATDPDREGEAISWHVQKVLEERKAL-KGIDVTRVAFNEITKSAVL 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R +D +L+ AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LI +RE
Sbjct: 123 DAIAKPRALDQDLIDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLISERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F PQEYW++EA +E S F A LTH +L++L I + EAK
Sbjct: 183 AEIERFNPQEYWSIEADFRTQERKS-----FTARLTHLDGTKLDRLDIKNEAEAKAAVAA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I + +F I ++ VR+NP P + TSTLQQ+A+ KL FSAT TM+LAQ+LYEGV+ D
Sbjct: 238 IEAGDF-TISEVEKKRVRRNPQPPFTTSTLQQEASRKLGFSATRTMQLAQRLYEGVEF-D 295
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ +S EA + IR+ I YG + P R Y + KNAQEAHEAI
Sbjct: 296 GETVGLITYMRTDGVQLSQEAIQSIRTAIGSTYGDRYLPNTA-RVYTSRAKNAQEAHEAI 354
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD++R P L +D D LKLY+L+W RT+A QM A + Q +D+ + R++
Sbjct: 355 RPTDVKRTPDSLKSHIDADQLKLYTLVWKRTVASQMASAELDQTAIDVLDRKGRSTLRAT 414
Query: 771 CSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S + F GF Y ED D A E+D E+ IL ++ G+ + E QHHT
Sbjct: 415 GSVIAFDGFLTLYQEDRDEPA------SEDD--ESGKILPPVERGENVARQETRSDQHHT 466
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RYSE SLVKKLEELGIGRPSTYAS ++VLQDR YVT+ R PE RGR+V+ FLS
Sbjct: 467 QPPPRYSEASLVKKLEELGIGRPSTYASIMQVLQDRQYVTLDKRRFIPEDRGRLVTTFLS 526
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F+ Y+FTAD+ET+LD+VSAG +W+ +L D+W F + L I QV + L+
Sbjct: 527 SFFTRYVAYNFTADLETQLDDVSAGQLDWRKVLRDFWQAFKGSVDGTKDLSITQVIEALD 586
Query: 950 KTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY---IAKTLY 1004
+ FA+ P+ DR CP C G L ++ +FGA FIGC+ +P C + + +
Sbjct: 587 QELATHFFANGPDGAPDRGCPSCDGGRLSLRLGKFGA--FIGCSNYPNCRFTRQLGEAAG 644
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGY--LPKRASV 1062
G + D + N PK++G P + ++V L+ GPYG YVQLGE G PKRAS+
Sbjct: 645 GKSNGADGEEMNL----PKVLGTDPETGQEVSLRKGPYGVYVQLGEPPEGSKEKPKRASL 700
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+ L L LL P +G+HP+ G I + R G +++ SV N+ P
Sbjct: 701 PRQLPPADVDLPKGLSLLSLPRPIGDHPETGTKIEAGIGRYGPYLKY----DSVYVNLPP 756
Query: 1123 ND----VTLEKALEFLSGKDV-RRCGRPKG 1147
+D + L A+E ++ K ++ GR G
Sbjct: 757 DDTVLTIGLNHAVELIAQKGAKKKAGRALG 786
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 14/120 (11%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
P+ IG HP + K+ G YG Y++ P V +I L A+EL+
Sbjct: 721 PRPIGDHPETGTKIEAGIGRYGPYLKYDSVYVNLPPDDT-------VLTIGLNHAVELIA 773
Query: 1081 ------RYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFL 1134
+ LG+HP+DG+P+ + R G +H A++PK+ +D+ LE+ALE L
Sbjct: 774 QKGAKKKAGRALGDHPEDGKPVTVHAGRFGPYAQHGALRATLPKSESMDDIALERALEIL 833
>gi|296117477|ref|ZP_06836064.1| DNA topoisomerase I [Gluconacetobacter hansenii ATCC 23769]
gi|295975998|gb|EFG82789.1| DNA topoisomerase I [Gluconacetobacter hansenii ATCC 23769]
Length = 916
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/796 (43%), Positives = 486/796 (61%), Gaps = 32/796 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD Y VL S+GHVRDL + GSVRPD+ F+M+WE +
Sbjct: 4 VVVVESPAKAKTINKYLGDNYTVLASFGHVRDLPPKDGSVRPDEGFAMIWEADERGAKQM 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GA +L LA+DPDREGEAI+WH+ ML++++ L + + V RV F+EIT+++I+
Sbjct: 64 AAIARALRGARHLYLATDPDREGEAISWHVRSMLEEKNLL-KGVDVQRVTFNEITKSAIQ 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D L++AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 TAMAHPRDLDFPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+P+EYW++ A+ + + F A LTH +L+Q + A + +
Sbjct: 183 AEIEVFRPREYWSIAALFSTPKGAA-----FTARLTHLDGAKLDQFDLNDEASAMAAKAR 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + +F V +R + R P P+ TST+QQ+A+ KL A M+ AQ+LYEG+ + G
Sbjct: 238 VEAGSFSVGAVERRKVKRNPPPPFTTSTMQQEASRKLGMGAQVAMRTAQQLYEGIDI-GG 296
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA IRS I +G+ + PE+ R Y K KNAQEAHEAIR
Sbjct: 297 ETVGLITYMRTDGVQMAGEAIGAIRSHIGTTFGAEYVPEKA-RVYATKAKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+RR PA ++ L+ D +LY LIW R++A QMQ A + Q+ VD+ +A R++
Sbjct: 356 PTDVRRSPADMARYLNADQKRLYDLIWKRSVASQMQSAELDQVAVDLHDAHARCTLRATG 415
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF Y E D A + +++ + DR +L ++ GD L GEV QH TQ
Sbjct: 416 SMIAFDGFLRLYSEGRDDSATKSEDDSDQDR-----MLPAMSEGDALRRGEVTADQHFTQ 470
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKK+EE+GIGRPSTYAS L VL+DRNYV ++SR PE RGR+V+AFL+
Sbjct: 471 PPPRYSEASLVKKMEEIGIGRPSTYASILTVLRDRNYVRLESRRFIPEDRGRLVTAFLTS 530
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F D FTA +E +LD++S G W+ ++ +W+ FS + L I V L+
Sbjct: 531 FFERYVDTQFTAGLEEQLDDISGGRANWRDVMSAFWTDFSHAVDQTKDLKISDVISALDA 590
Query: 951 TFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
F P +D R C CG G L K+ R+GA FIGC+ +P C Y + +
Sbjct: 591 DLAPYFF---PPRDDGGDPRVCTACGTGRLGLKLGRYGA--FIGCSNYPTCQYTRRLVVD 645
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLPKRAS 1061
+ ED + +++G+ P +V ++ GP+G YVQLG ED+ PKRA+
Sbjct: 646 PKEAEDADSLKEGM---RVLGNAPDGGPEVTVRRGPWGLYVQLGEPDPEDKKAK-PKRAT 701
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + D ITLE A+ LL P +G HP+ G+PI L R G V+ S+ K+
Sbjct: 702 IPRGIEGDKITLEQAVGLLSLPRIVGMHPETGEPIEAGLGRFGPYVKMGAVYGSLDKDDD 761
Query: 1122 PNDVTLEKALEFLSGK 1137
V L +A++ L+ K
Sbjct: 762 VLTVGLNRAVDALAKK 777
>gi|395779900|ref|ZP_10460368.1| DNA topoisomerase I [Bartonella washoensis 085-0475]
gi|395419650|gb|EJF85946.1| DNA topoisomerase I [Bartonella washoensis 085-0475]
Length = 853
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/800 (43%), Positives = 490/800 (61%), Gaps = 29/800 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+V+ S+GHVRDL A+ GSV PD DFSM W++ SA+
Sbjct: 2 NIVIVESPAKAKTINKYLGSQYKVVASFGHVRDLPAKDGSVLPDQDFSMKWDIDSASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L + V RVVF+ IT+ S+
Sbjct: 62 LNEIAKAVKEADSLILATDPDREGEAISWHILDVLRQKKVLKDK-PVKRVVFNAITKKSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDR
Sbjct: 121 LDAMNNPRDIDISLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F ++YWT+ L ++ SFPA LT F K++ +L I S +A I
Sbjct: 181 ESEIEHFIKEDYWTITTHL-----QTIRNDSFPARLTMFNQKKIGKLDIQSQEQADQIRL 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A ++ + + R P+ TSTLQQ A++KL FSA+ TM++AQKLYEG+++ +
Sbjct: 236 MLEEAEYRTLSVEAKPSKRNPSPPFTTSTLQQAASSKLGFSASRTMQIAQKLYEGIEI-N 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R +I E +GS++ PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GEMAGLITYMRTDGVQIAPEAIDTARKVIHESFGSNYIPEK-PRFYSTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD +R+P+ + LD D KLY LIW R +A QM+ A + + V+I + R
Sbjct: 354 RPTDFQRIPSQIRDFLDNDQAKLYELIWKRAIASQMRSAEIERTTVEIEAQQGENHANLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S + F GF + Y D + +EEN L + TG+ L +VE QH
Sbjct: 414 ATGSVIRFDGFISVYTD--------QRDEENSEENEITRLPQMNTGEALTKEKVESIQHS 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KKLEELGIGRPSTYASTL L DR Y+ + R L P+ +GR+V+AFL
Sbjct: 466 TEPPPRYSEASLIKKLEELGIGRPSTYASTLATLCDRGYIVIDKRKLIPDVKGRIVTAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F+ +Y FTAD+E +LD +S G WK +L D+W+ F++ Q L I V +L
Sbjct: 526 ENFFNRYVEYGFTADLEEKLDLISDGKLSWKDVLHDFWNGFNASIASIQELRITNVLDVL 585
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
T F + RSCP+C G L K+ R+GA F+GC+ +P C Y + L D
Sbjct: 586 NVTLAPLAFPVREDGSDVRSCPLCTNGQLSLKLGRYGA--FVGCSNYPECKY-TRQLGTD 642
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
EE+ RN DEP +G P + + + L++G +G Y+QLGE++ KRA +
Sbjct: 643 TGEENETMRN---DEPVTLGIDPKTGKDISLRNGRFGPYIQLGENKEA---KRAGLPKEW 696
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+ IT + AL LL P +G HP+ G+ I + R G + H A + + D+
Sbjct: 697 QTEKITFDKALALLSLPREIGIHPETGKIIKATIGRYGPYLMHDGKYAPLLHTDEIFDIG 756
Query: 1127 LEKALEFLSGKDVRRCGRPK 1146
+ +A+ L+ K + R +
Sbjct: 757 INRAVTVLAEKQENKTKRSR 776
Score = 44.7 bits (104), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 23/132 (17%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
P+ IG HP + + + G YG Y+ + K A + H ++ I + A+ +L
Sbjct: 713 PREIGIHPETGKIIKATIGRYGPYLM-------HDGKYAPLLHTDEIFDIGINRAVTVLA 765
Query: 1081 ----------RYPVN----LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
R ++ LG HP +G + +R R G V + A++PK+ P +VT
Sbjct: 766 EKQENKTKRSRTTISALATLGEHP-NGGTVTIRNGRYGPYVNWGKINATLPKDKDPINVT 824
Query: 1127 LEKALEFLSGKD 1138
L +ALE +S K+
Sbjct: 825 LSEALELISAKE 836
>gi|328543465|ref|YP_004303574.1| DNA topoisomerase I [Polymorphum gilvum SL003B-26A1]
gi|326413209|gb|ADZ70272.1| DNA topoisomerase I [Polymorphum gilvum SL003B-26A1]
Length = 878
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/809 (44%), Positives = 494/809 (61%), Gaps = 45/809 (5%)
Query: 355 VESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSI 414
+ES KAK I YLG Y+VL SYGHVRDL A+ GSV+PD+DF+M WEV S + L I
Sbjct: 1 MESPAKAKTINKYLGSGYQVLASYGHVRDLPAKDGSVKPDEDFAMSWEVDSKSQKRLNEI 60
Query: 415 KVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVAL 474
A+ A+ LILA+DPDREGEAI+WH++E+L ++ L + V RVVF+ IT+ +I A+
Sbjct: 61 AAAVKDADRLILATDPDREGEAISWHVLEVLHKKRVLKDK-PVERVVFNAITKQAILEAM 119
Query: 475 QAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEI 534
+ R IDA LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LICDREMEI
Sbjct: 120 KHPRAIDAPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLICDREMEI 179
Query: 535 DEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINS 594
+ F +EYW++ A L + L A LT F +++ +L I + EA+ I + + +
Sbjct: 180 ETFVKEEYWSILANLKTPSAEVLQ-----AGLTGFDGRKIGRLDIKTGDEAETIRRMLEA 234
Query: 595 ANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAA 654
A + V + R P+ TSTLQQ+A+ KL F+A TM++AQKLYEGV + G
Sbjct: 235 ARYTVASVVSKPAKRHPQPPFTTSTLQQEASRKLGFAAARTMQVAQKLYEGVAI-GGETT 293
Query: 655 GLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTD 714
GLITYMRTDG+ I+ EA R +I + +G ++ PE+ PR Y K KNAQEAHEAIRPTD
Sbjct: 294 GLITYMRTDGVQIAGEAISATRKVIGQDFGDNYVPEK-PRFYSSKAKNAQEAHEAIRPTD 352
Query: 715 IRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQ--IQVDIGNADESIVFRSSCS 772
+ R P ++ LD D +LY LIW RTMA QM+ A + + I +D A ++ R++ S
Sbjct: 353 LARRPRDVARFLDPDQARLYELIWKRTMASQMESAVLERTTIDIDAAGAGKTATLRATGS 412
Query: 773 RVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK------- 825
V F GF A Y+ E +++ EA L ++ G PL L VE K
Sbjct: 413 VVRFDGFLALYQ----------EGRDDEEDEAARRLPAVDDGAPLALAAVEGKPSAIEAD 462
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T PP RY+E SLVKK+EELGIGRPSTYASTL+ L+DR+YV + L P+ +GR+V+
Sbjct: 463 QHFTTPPPRYTEASLVKKMEELGIGRPSTYASTLQTLRDRDYVAFDKKQLVPQDKGRIVT 522
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
AFL +F+ +Y FTA +E +LD +SAG W+ +L ++W FS+ + L + QV
Sbjct: 523 AFLESFFNRYVEYDFTASLEEQLDRISAGELSWREVLANFWRDFSASVDETKDLRVSQVI 582
Query: 946 KMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK 1001
L +F P +D R+CP C G L KVSRFGA FIGC+ +P C+Y +
Sbjct: 583 DALNDLLAAHIFP--PREDGKDPRACPTCATGQLSLKVSRFGA--FIGCSNYPECSYTRQ 638
Query: 1002 TLY-GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRA 1060
GD + ED D PK++G PA+ +V L+SG +G YVQLGED P+R+
Sbjct: 639 LARNGDGEGEDAAS-----DGPKVLGTDPATGLEVSLRSGRFGPYVQLGEDAK---PRRS 690
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
S+ + L AL+LL P ++G HP+DG+ I L R G V+H T A++
Sbjct: 691 SLPRGWSAADLDLARALQLLSLPRDVGAHPEDGKMITAGLGRYGPFVQHDGTYANLGSAD 750
Query: 1121 KPNDVTLEKALEFLSGKDVRRCGRPKGKP 1149
+ V L +A++ L+ K + GR + P
Sbjct: 751 EVFSVGLNRAVDLLAEKR-SKTGRGRATP 778
>gi|409400147|ref|ZP_11250303.1| DNA topoisomerase I subunit omega [Acidocella sp. MX-AZ02]
gi|409130823|gb|EKN00562.1| DNA topoisomerase I subunit omega [Acidocella sp. MX-AZ02]
Length = 900
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/793 (44%), Positives = 486/793 (61%), Gaps = 31/793 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+VVVES +KAK I YLGD Y+VL S+GHVRDL + GSVRPD+DF+M W+ L
Sbjct: 4 IVVVESPSKAKTINKYLGDSYKVLASFGHVRDLPPKDGSVRPDEDFAMDWQADDRGAKQL 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I AL GA L LA+DPDREGEAI+WH+ L +++AL + + V RV F+EIT++++K
Sbjct: 64 SEIAKALKGAGTLYLATDPDREGEAISWHVQTALAERNAL-KGVKVRRVTFNEITKSAVK 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D L++AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 HAMAHPRDLDTPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYWTVEA + +PA LTH+Q K+L Q + + A+ E
Sbjct: 183 AEIEVFKAREYWTVEAAMLTPTGAP-----YPARLTHYQGKKLEQFDLNNEVSARAAEAA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + F V K+ R P P+ITSTLQQ+A+ KL FS+ TM+LAQ+LYEGV++ G
Sbjct: 238 VKAGTFNVANVEKKRTRRSPPPPFITSTLQQEASRKLGFSSQQTMRLAQQLYEGVEI-GG 296
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA +R I +G + P PR Y K KNAQEAHEAIR
Sbjct: 297 DTVGLITYMRTDGVQLAQEAVSSMRKQIQAEFGDAYVPV-APRIYQSKAKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTDI P ++ +L+ + KLY LI+ R +ACQM A + Q VD+ + + R++
Sbjct: 356 PTDIALKPEKVARMLNAEQAKLYELIYKRALACQMSAAELDQTAVDLTDG-KGQTLRATG 414
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y + ++ + IL + GDP +V QH TQP
Sbjct: 415 SVLAFDGFLKLYREDQDDPSDQQDEDSR-------ILPPIAKGDPAKTRDVTASQHFTQP 467
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P R+SE SLVKK+EELGIGRPSTYAS L VL+DRNYV +++R PE RGR+V+AFL+ +
Sbjct: 468 PPRFSEASLVKKMEELGIGRPSTYASILSVLRDRNYVKLEARRFIPEDRGRLVTAFLTSF 527
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F+ D FTA++E +LD ++ G +W+ +L +W FS+ + L I V L+
Sbjct: 528 FARYVDTGFTANLEEQLDQIAEGNEDWRAVLRAFWDDFSAAVAQTKDLKISDVIDALDAD 587
Query: 952 FGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK-TLYGDDD 1008
G F + + R CP CGEG L K+ RFG+ FIGC+ +P C Y K + G DD
Sbjct: 588 LGPHFFPTREDGTDPRLCPACGEGRLGLKLGRFGS--FIGCSNYPTCQYTRKLAVEGGDD 645
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLPKRASVSH 1064
E D L+ D +L+G HP + E + L+ GPYG YVQ G ED+ PKRAS++
Sbjct: 646 ESDALK-----DGMRLLGQHPDTGEDITLRRGPYGLYVQQGEPDPEDKKAK-PKRASLAR 699
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
+ ++TLE+AL LL P +G HP+ GQ I + R G V+ AS+ ++
Sbjct: 700 GMEGATLTLEEALGLLSLPRLIGLHPESGQKIEANIGRFGPYVKMGALFASMDRDDSVLH 759
Query: 1125 VTLEKALEFLSGK 1137
+ L +A+E ++ K
Sbjct: 760 MGLNRAMELIAKK 772
>gi|392377505|ref|YP_004984664.1| DNA topoisomerase I [Azospirillum brasilense Sp245]
gi|356878986|emb|CCC99880.1| DNA topoisomerase I [Azospirillum brasilense Sp245]
Length = 959
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/825 (43%), Positives = 494/825 (59%), Gaps = 68/825 (8%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G +VV+VES KAK I YLG Y V+ S+GHVRDL AR GSVRPD+DF+M WE+ +
Sbjct: 3 GSNVVIVESPAKAKTINKYLGSDYTVVASFGHVRDLPARDGSVRPDEDFAMDWELGDRSK 62
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ I A+ GAE + LA+DPDREGEAIAWH+ E+L+++ L ++ V R+ F+EIT++
Sbjct: 63 RHIDEIAKAVKGAERVYLATDPDREGEAIAWHLSELLREK-RLIDDSKVQRITFNEITKS 121
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+++ AL+A R++ LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC
Sbjct: 122 AVQAALEAPRDVSRELVDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLIC 181
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI+ FKPQEYWT+E S F A LT KRL++ ++ + A+
Sbjct: 182 ERESEIEVFKPQEYWTIEVGFATPGGAS-----FTAQLTQLDGKRLDKFALPAREAAEAA 236
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+I+ F V +R R+NP+P + TSTLQQ+A+ KL F AT TM+ AQ+LYEGV
Sbjct: 237 VARISPQAFSV-ATVERKQSRRNPSPPFTTSTLQQEASRKLGFGATRTMRTAQRLYEGVD 295
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ G GLITYMRTDG+ +S EA + R+LI +G + P + PR Y KNAQEAH
Sbjct: 296 I-GGETVGLITYMRTDGVSLSQEAIEGARNLIGSHWGERYVPAQ-PRVYKTAAKNAQEAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPTD+ R P +S L+ D L+LY LIW RT+A QM+ A + Q+ VDI + + +V
Sbjct: 354 EAIRPTDLFRRPEEVSSYLEGDELRLYELIWKRTLASQMESAVLDQVAVDIASPSKDVVL 413
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S V F GF Y++ + E L +++ GD L G++ +QH
Sbjct: 414 RATGSVVVFDGFLKVYQEDRDDGAADDDQERR--------LPAMEQGDALARGDISPEQH 465
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RY+E SLVKKLEELGIGRPSTYAS L+VLQDRNYV + R PE RGR+V+AF
Sbjct: 466 FTQPPPRYTEASLVKKLEELGIGRPSTYASILQVLQDRNYVRLDKRRFIPEDRGRLVTAF 525
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L ++F+ +Y+FTAD+E +LD +S G +WK +L D+W F + L I QV
Sbjct: 526 LKNFFNRYVEYNFTADLENKLDEISDGRIDWKTVLRDFWRAFHVAVDGTKDLTITQVLTT 585
Query: 948 LEKTFGDSLFASLPNKD------RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK 1001
L++ G F + N D R CPVC +G L K+ + GA FIGC+++P C Y +
Sbjct: 586 LDEELGPHFFPTNANSDSPGHDPRVCPVCSQGRLGLKLGKMGA--FIGCSRYPDCRY-TR 642
Query: 1002 TLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYL----- 1056
L +DE Q P+ +G+ P + V ++ GPYG Y+QLG
Sbjct: 643 PLAVANDENGEAQEG-----PRELGNDPETSLPVTVRRGPYGAYIQLGPPPVAAAPAEAV 697
Query: 1057 -----------------------PKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDG 1093
PKR S+ + L+ AL+LL P ++GNHP+ G
Sbjct: 698 VEEAPVDGKKTKGKKKVKTEAPKPKRVSLPKGMAAADVDLDTALKLLALPRSIGNHPETG 757
Query: 1094 QPIMLRLARAGFSVRHRRTIASVPKNMKPND----VTLEKALEFL 1134
+ I + R G ++H SV K++ P+D + + +A++ L
Sbjct: 758 EDISAGIGRFGPYLKH----GSVYKSLTPDDDVLTIGINRAVDLL 798
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ IG+HP + E + G +G Y++ G P DV +I + A++LL
Sbjct: 747 PRSIGNHPETGEDISAGIGRFGPYLKHGSVYKSLTPD-------DDVLTIGINRAVDLLA 799
Query: 1082 YPV--------NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEF 1133
LG+HPK G+P+ R G V+H AS+PK + + VTLE+ALE
Sbjct: 800 GAAKKASAPAKTLGDHPKTGKPVTTGSGRFGPYVKHGSVYASIPKGTEADSVTLEQALEL 859
Query: 1134 L 1134
L
Sbjct: 860 L 860
>gi|347735148|ref|ZP_08868085.1| DNA topoisomerase I [Azospirillum amazonense Y2]
gi|346921708|gb|EGY02320.1| DNA topoisomerase I [Azospirillum amazonense Y2]
Length = 889
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/813 (44%), Positives = 494/813 (60%), Gaps = 51/813 (6%)
Query: 354 VVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKS 413
+VES KAK I YLGD + VL SYGHVRDL AR GSV+P++DFSM WE+ + H+
Sbjct: 1 MVESPAKAKTINKYLGDDFTVLASYGHVRDLPARDGSVKPEEDFSMEWELGDRSKRHIDE 60
Query: 414 IKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVA 473
I A GA + LA+DPDREGEAIAWH+ ++L ++ + + V RV F+EIT++++ A
Sbjct: 61 ITRAAKGATRIYLATDPDREGEAIAWHVKQLLDEK-RITGKVDVKRVTFNEITKSAVLDA 119
Query: 474 LQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREME 533
+ R++ LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE E
Sbjct: 120 IAHPRDVHQELVDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERESE 179
Query: 534 IDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKIN 593
I+ F+PQEYWT+EA E + F A L K+L++ ++G+ +A I
Sbjct: 180 IEAFRPQEYWTIEA-----EFRTPAGSPFTARLVGLNGKKLDKFTLGNKGDADAALATIR 234
Query: 594 SANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGT 652
+F ++++ +R VR+NP P+ TSTLQQ+A+ KL F AT TM++AQKLYEGV + G
Sbjct: 235 PLSF-MVRSVERRQVRRNPFPPFTTSTLQQEASRKLGFGATKTMRIAQKLYEGVDI-GGE 292
Query: 653 AAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRP 712
GLITYMRTDG+ +S+EA R LI +G+ + P PR Y KNAQEAHEAIRP
Sbjct: 293 TVGLITYMRTDGVQLSNEAIDGARRLISSAFGNEYLPN-APRVYKSSAKNAQEAHEAIRP 351
Query: 713 TDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCS 772
TD+ R P + LD+D +LY L+W RT+ACQM A + Q+ VDI + FR++ S
Sbjct: 352 TDMFRRPDQMGRFLDKDEQRLYELVWKRTIACQMASAELDQVSVDIASPKGEAQFRATGS 411
Query: 773 RVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPP 832
V F GF Y++ A ++ + L ++K GD L GEV+ QH TQPP
Sbjct: 412 IVTFDGFLKVYQEDRDDAGDDEDKDTR--------LPAMKDGDDLAKGEVKSDQHFTQPP 463
Query: 833 ARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYF 892
RY+E SLVKK+EELGIGRPSTYAS L+VLQDRNYV ++ R PE RGR+V+ FL ++F
Sbjct: 464 PRYTEASLVKKMEELGIGRPSTYASILQVLQDRNYVRLEKRRFEPEDRGRLVTTFLENFF 523
Query: 893 SEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTF 952
+ +Y FTAD+ET+LD++S G +WK +L ++W FS+ + L I QV L++
Sbjct: 524 NRYVEYGFTADLETKLDDISGGRIDWKTVLREFWQAFSAAVEGTKDLTITQVLDALDEAL 583
Query: 953 GDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
G F + P + R CPVCGEG L K+ + GA FIGC+ +P C Y + L +
Sbjct: 584 GPHFFPT-PTEGGRDPRVCPVCGEGRLSLKLGKNGA--FIGCSNYPGCKY-TRPLSVEGG 639
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDV 1068
EE R +G+ P + V +K GPYG YVQ G PKR S+ +
Sbjct: 640 EEGNADRE--------LGNDPETGYPVSMKRGPYGVYVQTGAPDEPK-PKRVSLPRAMNP 690
Query: 1069 DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND---- 1124
+ L+ AL LL P +LG HP+ GQ I + R G ++H KN+ P+D
Sbjct: 691 QDVDLDIALRLLALPRSLGPHPETGQEITAGIGRFGPYLKH----GDAYKNLTPDDDVLT 746
Query: 1125 VTLEKALEFLSGKDVRR--CGR-----PK-GKP 1149
+ L +A+ L+G R+ GR PK GKP
Sbjct: 747 IGLNRAVVLLAGVAARKTVAGRELGNHPKDGKP 779
>gi|23500348|ref|NP_699788.1| DNA topoisomerase I [Brucella suis 1330]
gi|261753588|ref|ZP_05997297.1| DNA topoisomerase I [Brucella suis bv. 3 str. 686]
gi|376278570|ref|YP_005108603.1| DNA topoisomerase I [Brucella suis VBI22]
gi|384223131|ref|YP_005614296.1| DNA topoisomerase I [Brucella suis 1330]
gi|23463964|gb|AAN33793.1| DNA topoisomerase I [Brucella suis 1330]
gi|261743341|gb|EEY31267.1| DNA topoisomerase I [Brucella suis bv. 3 str. 686]
gi|343384579|gb|AEM20070.1| DNA topoisomerase I [Brucella suis 1330]
gi|358260008|gb|AEU07741.1| DNA topoisomerase I [Brucella suis VBI22]
Length = 877
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/803 (44%), Positives = 489/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 62 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 181 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 354 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L I V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEVLRDFWRAFSGSVEDIKELRITNVLDAL 584
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 585 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKY-TRQLGGE 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 642 ANGETAAS-----DEPKPLGKDPFTGEEITARTGRFGPYIQRGE---GKEAKRASLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P N+G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TLDTVDHEKAIALLSLPRNIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|161620666|ref|YP_001594552.1| DNA topoisomerase I [Brucella canis ATCC 23365]
gi|260568108|ref|ZP_05838577.1| DNA topoisomerase I [Brucella suis bv. 4 str. 40]
gi|161337477|gb|ABX63781.1| DNA topoisomerase I [Brucella canis ATCC 23365]
gi|260154773|gb|EEW89854.1| DNA topoisomerase I [Brucella suis bv. 4 str. 40]
Length = 877
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/803 (44%), Positives = 488/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 62 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 181 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 354 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y + R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYTIIDKRKLIPEAKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L I V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEVLRDFWRAFSGSVEDIKELRITNVLDAL 584
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 585 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKYT-RQLGGE 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 642 ANGETAAS-----DEPKPLGKDPFTGEEITARTGRFGPYIQRGE---GKEAKRASLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P N+G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TLDTVDHEKAIALLSLPRNIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|297249578|ref|ZP_06933279.1| DNA topoisomerase I [Brucella abortus bv. 5 str. B3196]
gi|297173447|gb|EFH32811.1| DNA topoisomerase I [Brucella abortus bv. 5 str. B3196]
Length = 886
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/803 (44%), Positives = 489/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 11 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 70
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 71 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 130 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 190 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 244
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 245 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 303
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 304 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 362
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 363 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 422
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 423 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 473
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 474 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 533
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 534 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEILRDFWRAFSGSVEDIKELRVTNVLDAL 593
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 594 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKY-TRQLGGE 650
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 651 ANGE-----TAASDEPKPLGKDPFTGEQITARTGRFGPYIQRGE---GKEAKRASLPKGW 702
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P N+G HP+ G+ I + R G V H T A++ + V
Sbjct: 703 TLDTVDHEKAIALLSLPRNIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 762
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 763 LNRAVSVLADKQSKGGGRGRSTP 785
>gi|114707185|ref|ZP_01440083.1| DNA topoisomerase I [Fulvimarina pelagi HTCC2506]
gi|114537381|gb|EAU40507.1| DNA topoisomerase I [Fulvimarina pelagi HTCC2506]
Length = 914
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/817 (44%), Positives = 502/817 (61%), Gaps = 52/817 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VV+VES KAK I YLG Y+VL SYGHVRDL + GSVRPD+DF M WEV + L
Sbjct: 3 VVIVESPAKAKTINKYLGSGYKVLASYGHVRDLPPKDGSVRPDEDFEMSWEVGKPSQKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A+ L+LA+DPDREGEAI+WH++E+L+Q+ AL + V+RVVF+ IT+ ++
Sbjct: 63 TEIAQAVRSADGLVLATDPDREGEAISWHVLEVLRQKKALGKK-PVSRVVFNAITKKAVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ REIDA LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDRE
Sbjct: 122 DAIANPREIDAPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+PQEYW V A L + + D A LT F++ R+ +LSIG A DI+
Sbjct: 182 SEIERFRPQEYWQVLAHLATERGETFD-----ARLTAFENDRIQRLSIGDGKRANDIKAM 236
Query: 592 INSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SA F V ++ + R+NP P+ TS+LQQ A+ KL FSA+ TM++AQ+LYEG+ +
Sbjct: 237 LESAAFTV-ESVEAKPTRRNPGPPFTTSSLQQAASAKLGFSASRTMQVAQRLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ ++ EA R I +G + PE+ R Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQMAPEAVANAREAIESDFGKRYLPEKA-RYYATKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI-GNADESIV-FR 768
RPT R P + LD+D ++LY LIW R +A QM A + + VDI +D I R
Sbjct: 354 RPTSFSRSPRDVERYLDKDQIRLYELIWKRGIASQMASAEIERTTVDIEAKSDGRIAKLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGE------V 822
+S ++F GF AAY D ++++ +N + K + E +
Sbjct: 414 ASGQVIKFDGFLAAYVD-------HRDDSKNVSDSDEDTDDDSKRLPEMSAKERAERRSI 466
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
+ QH T+PP RYSE SL+K++EELGIGRPSTYA+TL+ LQDR+Y+ V+ R L P+ +GR
Sbjct: 467 DATQHFTEPPPRYSEASLIKRMEELGIGRPSTYAATLQTLQDRDYIVVEKRKLLPDAKGR 526
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+AFL ++F +Y FTAD+E +LD +SAG +WK +L ++W FS++ + L +
Sbjct: 527 LVTAFLQNFFDRYVEYDFTADLEEKLDKISAGELDWKDVLREFWREFSAHVDETKELRVS 586
Query: 943 QVEKMLEKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY-- 998
V L + +F + + R+CP CG G L K+ R+GA F+GC+ +P CN+
Sbjct: 587 DVLDALNEDLAPLVFPEREDGTEPRACPRCGNGKLSLKLGRYGA--FVGCSNYPECNFTR 644
Query: 999 -IAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLP 1057
+ +L D E + D P+ +G+ P + E + L++G +G YVQ GE G
Sbjct: 645 QLGTSLAVDSSE------AGDDDGPRELGNDPETGEPITLRTGRFGPYVQRGE---GKEA 695
Query: 1058 KRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVP 1117
R SV +V SI LE AL+LL P +G HP+DG+P+++ L R G V+H +T A+V
Sbjct: 696 SRTSVPKGWEVGSIDLEKALKLLTLPREVGKHPEDGEPMIVNLGRYGPYVQHLKTYANVE 755
Query: 1118 K-----NMKPNDVTLEKALEFLSGKDVRRCGRPKGKP 1149
M PN +A+ ++ K + GR +G P
Sbjct: 756 SVEDLFEMGPN-----RAVSLIAEKR-EKGGRGRGTP 786
>gi|376276695|ref|YP_005152756.1| DNA topoisomerase I [Brucella canis HSK A52141]
gi|363405069|gb|AEW15363.1| DNA topoisomerase I [Brucella canis HSK A52141]
Length = 886
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/803 (44%), Positives = 488/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 11 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 70
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 71 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 130 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 190 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 244
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 245 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 303
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 304 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 362
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 363 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 422
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 423 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 473
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y + R L PE +GR+V+AFL
Sbjct: 474 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYTIIDKRKLIPEAKGRLVTAFL 533
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L I V L
Sbjct: 534 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEVLRDFWRAFSGSVEDIKELRITNVLDAL 593
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 594 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKYT-RQLGGE 650
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 651 ANGE-----TAASDEPKPLGKDPFTGEEITARTGRFGPYIQRGE---GKEAKRASLPKGW 702
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P N+G HP+ G+ I + R G V H T A++ + V
Sbjct: 703 TLDTVDHEKAIALLSLPRNIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 762
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 763 LNRAVSVLADKQSKGGGRGRSTP 785
>gi|407774702|ref|ZP_11121999.1| DNA topoisomerase I subunit omega [Thalassospira profundimaris
WP0211]
gi|407282184|gb|EKF07743.1| DNA topoisomerase I subunit omega [Thalassospira profundimaris
WP0211]
Length = 882
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/779 (44%), Positives = 482/779 (61%), Gaps = 40/779 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLGD Y+VL S+GH+RDL ++ GSV D+DF+MVWE +
Sbjct: 2 NLVIVESPAKAKTINKYLGDDYKVLASFGHIRDLPSKDGSVDTDNDFAMVWETDGRSEKQ 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A ++ + LA+DPDREGEAI+WHI+E+L+Q+ L V RVVFHEIT+ ++
Sbjct: 62 IKEIASAARDSDTIYLATDPDREGEAISWHILEVLEQKKLLRGR-DVHRVVFHEITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ RE++ LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL LIC+R
Sbjct: 121 TEAIANPRELNQELVDAYLARRALDYLVGFNLSPVLWRKLPGSRSAGRVQSVALRLICER 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI+ FKP EYW++EA ++ F A LTH ++L++L++G+ + AK ++
Sbjct: 181 EIEIEAFKPDEYWSLEA------GFAVPEGKFSARLTHLNGEKLDKLALGNESAAKIAKE 234
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
K+ S ++ V K ++ + R+ P+ TSTLQQ+A+ KL F A TM+LAQ+LYEGV +
Sbjct: 235 KVESRSYTVSKVERKDVKRRPQPPFTTSTLQQEASRKLGFGAKRTMQLAQRLYEGVDI-G 293
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTD + +S EA R LI + YG + P R + K KNAQEAHEA+
Sbjct: 294 GETVGLITYMRTDAVVLSQEALAAARRLIGKDYGDQYLPANA-RSFANKAKNAQEAHEAV 352
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ R P +S LD+D L LY+LIW RT+ACQM+ A Q+ VD+ + D +V R++
Sbjct: 353 RPTDLFRRPEQVSRHLDKDQLALYTLIWKRTVACQMEDARFDQVAVDLSSNDNHVVLRAN 412
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S V+F GF Y++ + +ENDR L LK G LG+V + QH TQ
Sbjct: 413 GSVVKFDGFLKLYQE----GKDDEAEDENDRR-----LPPLKEGQKPDLGKVSIDQHFTQ 463
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E SLVKK+EELGIGRPSTYAS + VLQDRNYV ++ R + RGR+V+AFLS
Sbjct: 464 PPPRYTEASLVKKMEELGIGRPSTYASIISVLQDRNYVLLERRRFVAQDRGRLVTAFLSK 523
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F Y+FTAD+E +LD VS G EWK +L D+W F A+ L I V L+
Sbjct: 524 FFERYVQYNFTADLENQLDEVSMGKLEWKDVLKDFWKSFKGNVDEAKELKITDVLDALQV 583
Query: 951 TFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ LF P +D CP C +GTL K+ +FGA F+GC+ +P CNY + +
Sbjct: 584 MLENYLFP--PREDGTDPHKCPKCTDGTLSLKLGKFGA--FLGCSNYPECNYTRPLVANE 639
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGED-----RTG----YLP 1057
+ E L PK++G + +++ L+ GPYG YVQLGE+ + G P
Sbjct: 640 NGSESELDSG-----PKVLGIDKETGKEITLRKGPYGVYVQLGEEEEVEGKNGKPKKVKP 694
Query: 1058 KRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASV 1116
KR S+ + + L A ELL P +G +P G+ + + R G V+ AS+
Sbjct: 695 KRTSLPKGLEPSVVDLTKAEELLTLPRVVGIYPDTGEEMKANIGRFGPYVQAGSIFASL 753
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 70/124 (56%), Gaps = 13/124 (10%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
P+++G +P + E++ G +G YVQ G AS+ DV +I A+ L+
Sbjct: 720 PRVVGIYPDTGEEMKANIGRFGPYVQAGS-------IFASLKADDDVLTIGENRAITLIA 772
Query: 1081 ----RYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSG 1136
+ +G HP DG+PI + + R G V+H++TIA++ ++++ +D+TLE A++ +
Sbjct: 773 DKREKSGTEIGKHPDDGEPIFVAVGRWGPFVKHKKTIANI-RDVERDDITLEMAIKAIKE 831
Query: 1137 KDVR 1140
K+ +
Sbjct: 832 KEAK 835
>gi|306845938|ref|ZP_07478505.1| DNA topoisomerase I [Brucella inopinata BO1]
gi|306273573|gb|EFM55418.1| DNA topoisomerase I [Brucella inopinata BO1]
Length = 877
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/803 (44%), Positives = 489/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 62 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 181 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ ANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLEGANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + +DI N + + R
Sbjct: 354 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTIDIEATNGSRAAMLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+T+ R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYITIDKRKLIPEAKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEVLRDFWRAFSGSVEDIKELRVTNVLDAL 584
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 585 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKYT-RQLGGE 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 642 ANGE-----TAASDEPKPLGKDPFTGEEITARTGRFGPYIQRGE---GKEAKRASLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|163844756|ref|YP_001622411.1| DNA topoisomerase I [Brucella suis ATCC 23445]
gi|163675479|gb|ABY39589.1| DNA topoisomerase I [Brucella suis ATCC 23445]
Length = 877
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/803 (44%), Positives = 489/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 62 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 181 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 354 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L I V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEVLRDFWRAFSGSVEDIKELRITNVLDAL 584
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 585 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKY-TRQLGGE 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 642 ANGE-----TAASDEPKPLGKDPFTGEEITARTGRFGPYIQRGE---GKEAKRASLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|49474247|ref|YP_032289.1| DNA topoisomerase I [Bartonella quintana str. Toulouse]
gi|49239751|emb|CAF26133.1| DNA topoisomerase I [Bartonella quintana str. Toulouse]
Length = 853
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/802 (43%), Positives = 488/802 (60%), Gaps = 29/802 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DFSM W+V SAA
Sbjct: 2 NIVIVESPAKAKTINKYLGSQYKVLASFGHVRDLPAKDGSVLPDQDFSMKWDVDSAASKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L + V RVVF+ IT+ S+
Sbjct: 62 LNEIAKAVKEADSLILATDPDREGEAISWHILDILRQKKVLKDK-PVKRVVFNAITKKSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDR
Sbjct: 121 LDAMNNPRDIDTSLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F ++YW++ L ++ F A LT F K++ +L I S +A +
Sbjct: 181 ESEIEHFIKEDYWSITTDL-----KTIRNEGFQARLTMFNHKKIGKLDIQSQEQADQMRH 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SA + + + R P+ TSTLQQ A++KL FSA+ TM++AQKLYEGV++ +
Sbjct: 236 MLESAKYHTLSVEAKHTKRNPFPPFTTSTLQQAASSKLGFSASRTMQIAQKLYEGVEI-N 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R +I E +GS + PE+ PR Y K KN QEAHEAI
Sbjct: 295 GEMAGLITYMRTDGVQIAPEAIDSARKVIHEFFGSDYVPEK-PRFYSTKAKNTQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD +R+P + LD D +KLY LIW R +A QM+ A + + V+I + R
Sbjct: 354 RPTDFQRIPNQVRNFLDTDQVKLYELIWKRAIASQMRSAEIERTTVEIEAQQGENHANLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S + F GF + Y D + +EEN L + TG+ L +VE QH
Sbjct: 414 ATGSVIRFDGFISVYTD--------QRDEENSEENEITHLPQINTGETLTKEKVEAIQHS 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KKLEELGIGRPSTYASTL L DR Y+ + R L P+ +GR+V+AFL
Sbjct: 466 TEPPPRYSEASLIKKLEELGIGRPSTYASTLATLSDRGYIIIDKRKLIPDVKGRIVTAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F+ +Y FTAD+E +LD +S G WK +L ++W F++ T Q L I V +L
Sbjct: 526 ENFFNRYVEYGFTADLEEKLDLISDGKLSWKDVLRNFWDGFNASITNIQELRITNVLDVL 585
Query: 949 EKTFGDSLFASLP--NKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
T +F N RSCP+C G L K+ R+GA F+GC+ +P C Y + L D
Sbjct: 586 NITLAPLIFPGREDGNNVRSCPLCSSGQLSLKLGRYGA--FVGCSNYPECKY-TRQLGTD 642
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
EE + RN DEP ++G P + + V L++G +G Y+Q+GE + KR +
Sbjct: 643 PGEEKEVMRN---DEPVMLGIDPKTGKDVSLRNGRFGPYIQVGEQKEA---KRVRLPKEW 696
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+ +TL+ AL L+ P +G HP+ G+ I + R G + H A + + D+
Sbjct: 697 QTEKMTLDKALALISLPREIGIHPETGKIITATIGRYGPYLAHDGKYAPLLHADEIFDIG 756
Query: 1127 LEKALEFLSGKDVRRCGRPKGK 1148
+ +A+ L+ K + R + K
Sbjct: 757 INRAVTVLAEKQENKTKRNRTK 778
Score = 43.5 bits (101), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 24/148 (16%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ IG HP + + + G YG Y+ + K A + H ++ I + A+ +L
Sbjct: 713 PREIGIHPETGKIITATIGRYGPYL-------AHDGKYAPLLHADEIFDIGINRAVTVLA 765
Query: 1082 YP---------------VNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
LG+HP DG + +R R G V + A++PK+ P V
Sbjct: 766 EKQENKTKRNRTKTAALATLGDHP-DGGTVTIRNGRYGPYVNWGKINATLPKDKDPISVK 824
Query: 1127 LEKALEFLSGK-DVRRCGRPKGKPKREE 1153
L +ALE +S K ++ K KR+E
Sbjct: 825 LSEALELISDKASSKKTTAKKASSKRKE 852
>gi|83269520|ref|YP_418811.1| DNA topoisomerase I [Brucella melitensis biovar Abortus 2308]
gi|260544775|ref|ZP_05820596.1| DNA topoisomerase I [Brucella abortus NCTC 8038]
gi|260763301|ref|ZP_05875633.1| DNA topoisomerase I [Brucella abortus bv. 2 str. 86/8/59]
gi|82939794|emb|CAJ12802.1| DNA topoisomerase I:DNA topoisomerase I, ATP-binding:DNA
topoisomerase I, DNA-binding:Bacterial DNA topoisomerase
I:Toprim su [Brucella melitensis biovar Abortus 2308]
gi|260098046|gb|EEW81920.1| DNA topoisomerase I [Brucella abortus NCTC 8038]
gi|260673722|gb|EEX60543.1| DNA topoisomerase I [Brucella abortus bv. 2 str. 86/8/59]
Length = 877
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/803 (44%), Positives = 490/803 (61%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 62 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 181 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 354 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEILRDFWRAFSGSVEDIKELRVTNVLDAL 584
Query: 949 EKTFGDSLF-ASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F A +D RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 585 NEELAPLVFPAREDGRDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKY-TRQLGGE 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 642 ANGE-----TAASDEPKPLGKDPFTGEQITARTGRFGPYIQRGE---GKEAKRASLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|260756632|ref|ZP_05868980.1| DNA topoisomerase I [Brucella abortus bv. 6 str. 870]
gi|260760062|ref|ZP_05872410.1| DNA topoisomerase I [Brucella abortus bv. 4 str. 292]
gi|260882449|ref|ZP_05894063.1| DNA topoisomerase I [Brucella abortus bv. 9 str. C68]
gi|260670380|gb|EEX57320.1| DNA topoisomerase I [Brucella abortus bv. 4 str. 292]
gi|260676740|gb|EEX63561.1| DNA topoisomerase I [Brucella abortus bv. 6 str. 870]
gi|260871977|gb|EEX79046.1| DNA topoisomerase I [Brucella abortus bv. 9 str. C68]
Length = 877
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/803 (44%), Positives = 489/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 62 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 181 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 354 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEILRDFWRAFSGSVEDIKELRVTNVLDAL 584
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 585 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKY-TRQLGGE 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 642 ANGE-----TAASDEPKPLGKDPFTGEQITARTGRFGPYIQRGE---GKEAKRASLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|114569832|ref|YP_756512.1| DNA topoisomerase I [Maricaulis maris MCS10]
gi|114340294|gb|ABI65574.1| DNA topoisomerase I [Maricaulis maris MCS10]
Length = 867
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/822 (43%), Positives = 495/822 (60%), Gaps = 61/822 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y VL S+GHVRDL A+ GSV+PD+DF M WE+ +A+
Sbjct: 2 NVVVVESPAKAKTINKYLGADYTVLASFGHVRDLPAKDGSVKPDEDFEMAWEIDTASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K+I A+ ++ LILA+DPDREGEAI+WH++E LQ++ L +++TV RV F+ IT+ +I
Sbjct: 62 VKAIADAVRESDRLILATDPDREGEAISWHLLEALQKRRVL-KDVTVQRVAFNAITKPAI 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R +D LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LICDR
Sbjct: 121 LEAMAHPRAVDMELVNAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F+ +EYWTV+A L + ++ SF A L K+L +LSI A +
Sbjct: 181 ELEIEKFRSEEYWTVDADL------TANSDSFRAKLVTLGGKKLQKLSIKDRASANAAVE 234
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+NSAN + + R P P+ TSTLQQ+AA KL FSAT TM+ AQKLYEGV L
Sbjct: 235 AVNSANLSITGVEAKPAKRNPPPPFTTSTLQQEAARKLGFSATRTMQTAQKLYEGVTL-G 293
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ + EA + R +I + +GS + P PR Y K KNAQEAHEAI
Sbjct: 294 GETTGLITYMRTDGVTMVPEAVSQARDVIGKEHGSLYVPS-APRHYASKAKNAQEAHEAI 352
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT RLP LS LD D +LY LIW R +A QM+ A + VDI + D R+
Sbjct: 353 RPTSFSRLPEKLS--LDADMARLYQLIWRRAVASQMESARFERTTVDIASPDGQTALRAV 410
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
+ F GF A Y+ E +++ E L L G + + QH TQ
Sbjct: 411 GTVQLFDGFLALYQ----------EGRDDEEDEGENRLPKLTQGAAATVAKTHADQHFTQ 460
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP R++E SLVK++EELGIGRPSTYASTL+VL+DR YV ++ +P +GR+V AFL +
Sbjct: 461 PPPRFTEASLVKRMEELGIGRPSTYASTLQVLRDREYVQMEKNRFHPFDKGRVVIAFLEN 520
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F+ +Y FTA +ET+LD VSAG +WK LL D+W+ F + L I V L +
Sbjct: 521 FFARYVEYDFTASLETQLDKVSAGELDWKQLLRDFWTDFRAAIDEIGELRITNVLDALNE 580
Query: 951 TFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK-TLY 1004
+F P K+ R CP C EGTL ++ +FGA F+GC+ HP C++ + +
Sbjct: 581 ALAPHIF---PEKEDGTDPRLCPSCKEGTLSLRLGKFGA--FLGCSNHPDCSFTRQMSPP 635
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQL---GEDRTGYLPKRAS 1061
G+DD + ++I HP + + V LK+G +G+Y+Q+ GED+ PKR+S
Sbjct: 636 GEDDAQGD----------RVIVQHPETGKDVELKNGRFGWYLQMQLDGEDK----PKRSS 681
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ D ++T E A++L+ P +G HP DGQPI + R G V H +T A++P +
Sbjct: 682 IPKGWDAATLTEEQAIKLIDLPRTVGEHPDDGQPITANIGRYGPYVHHDKTYANIPSVEE 741
Query: 1122 PNDVTLEKALEFLSGKD------------VRRCGRPKGKPKR 1151
++ L +A+ ++ K ++ G GKP R
Sbjct: 742 VFEIGLNRAVSVIADKRANGGRRGATASALKELGEHDGKPVR 783
>gi|225686390|ref|YP_002734362.1| DNA topoisomerase I [Brucella melitensis ATCC 23457]
gi|260564696|ref|ZP_05835181.1| DNA topoisomerase I [Brucella melitensis bv. 1 str. 16M]
gi|261216057|ref|ZP_05930338.1| DNA topoisomerase I [Brucella abortus bv. 3 str. Tulya]
gi|265989919|ref|ZP_06102476.1| DNA topoisomerase I [Brucella melitensis bv. 1 str. Rev.1]
gi|265992976|ref|ZP_06105533.1| DNA topoisomerase I [Brucella melitensis bv. 3 str. Ether]
gi|265999100|ref|ZP_05465001.2| DNA topoisomerase I [Brucella melitensis bv. 2 str. 63/9]
gi|384410215|ref|YP_005598835.1| DNA topoisomerase I [Brucella melitensis M28]
gi|225642495|gb|ACO02408.1| DNA topoisomerase I [Brucella melitensis ATCC 23457]
gi|260152339|gb|EEW87432.1| DNA topoisomerase I [Brucella melitensis bv. 1 str. 16M]
gi|260917664|gb|EEX84525.1| DNA topoisomerase I [Brucella abortus bv. 3 str. Tulya]
gi|262763846|gb|EEZ09878.1| DNA topoisomerase I [Brucella melitensis bv. 3 str. Ether]
gi|263000588|gb|EEZ13278.1| DNA topoisomerase I [Brucella melitensis bv. 1 str. Rev.1]
gi|263092205|gb|EEZ16502.1| DNA topoisomerase I [Brucella melitensis bv. 2 str. 63/9]
gi|326410762|gb|ADZ67826.1| DNA topoisomerase I [Brucella melitensis M28]
Length = 877
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/803 (44%), Positives = 489/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 62 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 181 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 354 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEILRDFWRAFSGSVEDIKELRVTNVLDAL 584
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 585 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKY-TRQLGGE 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 642 ANGE-----TAASDEPKPLGKDPFTGEEITARTGRFGPYIQRGE---GKEAKRASLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|237817087|ref|ZP_04596079.1| DNA topoisomerase I [Brucella abortus str. 2308 A]
gi|237787900|gb|EEP62116.1| DNA topoisomerase I [Brucella abortus str. 2308 A]
Length = 901
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/803 (44%), Positives = 490/803 (61%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 26 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 85
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 86 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 144
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 145 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 204
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 205 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 259
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 260 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 318
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 319 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 377
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 378 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 437
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 438 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 488
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 489 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 548
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 549 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEILRDFWRAFSGSVEDIKELRVTNVLDAL 608
Query: 949 EKTFGDSLF-ASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F A +D RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 609 NEELAPLVFPAREDGRDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKY-TRQLGGE 665
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 666 ANGE-----TAASDEPKPLGKDPFTGEQITARTGRFGPYIQRGE---GKEAKRASLPKGW 717
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 718 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 777
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 778 LNRAVSVLADKQSKGGGRGRSTP 800
>gi|256015381|ref|YP_003105390.1| DNA topoisomerase I [Brucella microti CCM 4915]
gi|261220441|ref|ZP_05934722.1| DNA topoisomerase I [Brucella ceti B1/94]
gi|261318718|ref|ZP_05957915.1| DNA topoisomerase I [Brucella pinnipedialis B2/94]
gi|261756811|ref|ZP_06000520.1| DNA topoisomerase I [Brucella sp. F5/99]
gi|265986516|ref|ZP_06099073.1| DNA topoisomerase I [Brucella pinnipedialis M292/94/1]
gi|265996208|ref|ZP_06108765.1| DNA topoisomerase I [Brucella ceti M490/95/1]
gi|340792389|ref|YP_004757853.1| DNA topoisomerase I [Brucella pinnipedialis B2/94]
gi|255998041|gb|ACU49728.1| DNA topoisomerase I [Brucella microti CCM 4915]
gi|260919025|gb|EEX85678.1| DNA topoisomerase I [Brucella ceti B1/94]
gi|261297941|gb|EEY01438.1| DNA topoisomerase I [Brucella pinnipedialis B2/94]
gi|261736795|gb|EEY24791.1| DNA topoisomerase I [Brucella sp. F5/99]
gi|262550505|gb|EEZ06666.1| DNA topoisomerase I [Brucella ceti M490/95/1]
gi|264658713|gb|EEZ28974.1| DNA topoisomerase I [Brucella pinnipedialis M292/94/1]
gi|340560848|gb|AEK56085.1| DNA topoisomerase I [Brucella pinnipedialis B2/94]
Length = 877
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/803 (44%), Positives = 489/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 62 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 181 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 354 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEVLRDFWRAFSGSVEDIKELRVTNVLDAL 584
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 585 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKYT-RQLGGE 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 642 ANGE-----TAASDEPKPLGKDPFTGEEITARTGRFGPYIQRGE---GKEAKRASLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|17989011|ref|NP_541644.1| DNA topoisomerase I [Brucella melitensis bv. 1 str. 16M]
gi|17984849|gb|AAL53908.1| DNA topoisomerase i [Brucella melitensis bv. 1 str. 16M]
Length = 901
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/803 (44%), Positives = 489/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 26 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 85
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 86 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 144
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 145 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 204
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 205 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 259
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 260 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 318
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 319 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 377
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 378 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 437
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 438 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 488
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 489 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 548
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 549 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEILRDFWRAFSGSVEDIKELRVTNVLDAL 608
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 609 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKY-TRQLGGE 665
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 666 ANGE-----TAASDEPKPLGKDPFTGEEITARTGRFGPYIQRGE---GKEAKRASLPKGW 717
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 718 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 777
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 778 LNRAVSVLADKQSKGGGRGRSTP 800
>gi|384446740|ref|YP_005660958.1| DNA topoisomerase I [Brucella melitensis NI]
gi|349744737|gb|AEQ10279.1| DNA topoisomerase I [Brucella melitensis NI]
Length = 877
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/803 (44%), Positives = 489/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 62 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 181 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 354 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEILRDFWRAFSGSVEDIKELRVTNVLDAL 584
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 585 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKY-PRQLGGE 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 642 ANGE-----TAASDEPKPLGKDPFTGEEITARTGRFGPYIQRGE---GKEAKRASLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|261750314|ref|ZP_05994023.1| DNA topoisomerase I [Brucella suis bv. 5 str. 513]
gi|261740067|gb|EEY27993.1| DNA topoisomerase I [Brucella suis bv. 5 str. 513]
Length = 877
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/803 (44%), Positives = 489/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 62 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 181 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 354 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELG+GRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEATLIKKMEELGVGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEVLRDFWRAFSGSVEDIKELRVTNVLDAL 584
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 585 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKYT-RQLGGE 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 642 ANGE-----TAASDEPKPLGKDPFTGEEITARTGRFGPYIQRGE---GKEAKRASLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|384213114|ref|YP_005602197.1| DNA topoisomerase I [Brucella melitensis M5-90]
gi|326554054|gb|ADZ88693.1| DNA topoisomerase I [Brucella melitensis M5-90]
Length = 886
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/803 (44%), Positives = 489/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 11 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 70
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 71 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 130 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 190 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 244
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 245 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 303
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 304 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 362
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 363 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 422
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 423 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 473
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 474 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 533
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 534 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEILRDFWRAFSGSVEDIKELRVTNVLDAL 593
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 594 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKY-TRQLGGE 650
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 651 ANGE-----TAASDEPKPLGKDPFTGEEITARTGRFGPYIQRGE---GKEAKRASLPKGW 702
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 703 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 762
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 763 LNRAVSVLADKQSKGGGRGRSTP 785
>gi|306841748|ref|ZP_07474434.1| DNA topoisomerase I [Brucella sp. BO2]
gi|306288153|gb|EFM59540.1| DNA topoisomerase I [Brucella sp. BO2]
Length = 877
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/803 (44%), Positives = 489/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV + +
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDNNSAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 62 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 181 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ ANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLEGANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 354 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+T+ R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYITIDKRKLIPEAKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEVLRDFWRAFSGSVEDIKELRVTNVLDAL 584
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 585 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKYT-RQLGGE 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 642 ANGE-----TAASDEPKPLGKDPFTGEEITARTGRFGPYIQRGE---GKEAKRASLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|376271177|ref|YP_005114222.1| DNA topoisomerase I [Brucella abortus A13334]
gi|423168566|ref|ZP_17155268.1| DNA topoisomerase I [Brucella abortus bv. 1 str. NI435a]
gi|423172001|ref|ZP_17158675.1| DNA topoisomerase I [Brucella abortus bv. 1 str. NI474]
gi|423174268|ref|ZP_17160938.1| DNA topoisomerase I [Brucella abortus bv. 1 str. NI486]
gi|423176145|ref|ZP_17162811.1| DNA topoisomerase I [Brucella abortus bv. 1 str. NI488]
gi|423181430|ref|ZP_17168070.1| DNA topoisomerase I [Brucella abortus bv. 1 str. NI010]
gi|423184563|ref|ZP_17171199.1| DNA topoisomerase I [Brucella abortus bv. 1 str. NI016]
gi|423187713|ref|ZP_17174326.1| DNA topoisomerase I [Brucella abortus bv. 1 str. NI021]
gi|423190134|ref|ZP_17176743.1| DNA topoisomerase I [Brucella abortus bv. 1 str. NI259]
gi|363402349|gb|AEW19318.1| DNA topoisomerase I [Brucella abortus A13334]
gi|374536423|gb|EHR07943.1| DNA topoisomerase I [Brucella abortus bv. 1 str. NI474]
gi|374537772|gb|EHR09282.1| DNA topoisomerase I [Brucella abortus bv. 1 str. NI435a]
gi|374540269|gb|EHR11771.1| DNA topoisomerase I [Brucella abortus bv. 1 str. NI486]
gi|374546020|gb|EHR17480.1| DNA topoisomerase I [Brucella abortus bv. 1 str. NI010]
gi|374546863|gb|EHR18322.1| DNA topoisomerase I [Brucella abortus bv. 1 str. NI016]
gi|374554747|gb|EHR26157.1| DNA topoisomerase I [Brucella abortus bv. 1 str. NI488]
gi|374555517|gb|EHR26926.1| DNA topoisomerase I [Brucella abortus bv. 1 str. NI021]
gi|374556174|gb|EHR27579.1| DNA topoisomerase I [Brucella abortus bv. 1 str. NI259]
Length = 886
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/803 (44%), Positives = 490/803 (61%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 11 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 70
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 71 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 130 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 190 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 244
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 245 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 303
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 304 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 362
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 363 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 422
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 423 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 473
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 474 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 533
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 534 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEILRDFWRAFSGSVEDIKELRVTNVLDAL 593
Query: 949 EKTFGDSLF-ASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F A +D RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 594 NEELAPLVFPAREDGRDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKY-TRQLGGE 650
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 651 ANGE-----TAASDEPKPLGKDPFTGEQITARTGRFGPYIQRGE---GKEAKRASLPKGW 702
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 703 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 762
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 763 LNRAVSVLADKQSKGGGRGRSTP 785
>gi|307946436|ref|ZP_07661771.1| DNA topoisomerase I [Roseibium sp. TrichSKD4]
gi|307770100|gb|EFO29326.1| DNA topoisomerase I [Roseibium sp. TrichSKD4]
Length = 905
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/808 (43%), Positives = 500/808 (61%), Gaps = 45/808 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y VL SYGHVRDL + GSV+PD++F+M W+V S +
Sbjct: 2 NIVIVESPAKAKTINKYLGSDYHVLASYGHVRDLPPKDGSVKPDENFAMSWQVDSKSQKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK I A+ A+ LILA+DPDREGEAI+WH++E+LQ++ L + + RVVF+ IT+ SI
Sbjct: 62 LKEIADAVKDADKLILATDPDREGEAISWHVLEVLQKKRVLKDK-KIERVVFNAITKKSI 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ RE+D LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LICDR
Sbjct: 121 LEAMDNPRELDTPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
EMEI+ F+PQEYW++ A + K + + F A LT + +++ +L I + EA +I+
Sbjct: 181 EMEIEVFQPQEYWSIFAGM-KTPAGGV----FQAGLTGYDGRKIGRLDIKTEAEATEIKT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++SA++ V + + R P+ TSTLQQ+A+ KL F+A+ TM++AQKLYEG+ +
Sbjct: 236 MLDSASYLVESVTSKPAKRNPAAPFTTSTLQQEASRKLGFAASRTMQVAQKLYEGISI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G +GLITYMRTDG+ I+ EA R +I + +G ++ PE+ PR Y K KNAQEAHEA+
Sbjct: 295 GETSGLITYMRTDGVQIAPEAISSARKVIAQDFGDNYVPEK-PRFYASKAKNAQEAHEAV 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVFR 768
RPTD+ R P ++ LD D KLY LIW RTMA QM+ A + + ++I + +S R
Sbjct: 354 RPTDLSRRPKDVARFLDSDQAKLYELIWKRTMASQMESAVLERTTIEITAKGSGKSAQLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLG-------E 821
++ S V F GF A Y+ E ++D E L ++ G L L
Sbjct: 414 ATGSVVRFDGFFALYQ----------EGRDDDDEEGSNRLPAVDQGANLSLTVLEDKKQS 463
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRG 881
VE QH T PP RY+E SLVKK+EELGIGRPSTYASTL+ L+DR+YV ++ + L P+ +G
Sbjct: 464 VEASQHFTTPPPRYTEASLVKKMEELGIGRPSTYASTLQTLRDRDYVELEKKQLVPQDKG 523
Query: 882 RMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI 941
R+V+AFL +F+ ++ FTA +E +LD +SAG W +L D+W+ FS+ + L +
Sbjct: 524 RIVTAFLESFFNRYVEFDFTASLEEQLDKISAGELSWLDVLRDFWNAFSATVDETKDLRV 583
Query: 942 HQVEKMLEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+V L + G +F P K+ R CP C G L KVSRFGA FIGC+ +P C
Sbjct: 584 SEVIDNLNELLGPHIF---PAKEDGSDPRKCPTCDTGQLSLKVSRFGA--FIGCSNYPEC 638
Query: 997 NYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYL 1056
+Y + D E+D D PK++G P + V L++G +G YVQLGE+
Sbjct: 639 SYTRQLAKSGDGEDD-----GAADGPKVLGQDPETGLDVSLRTGRFGPYVQLGEEAK--- 690
Query: 1057 PKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASV 1116
PKR+S+ + L+ AL+LL P +G HP+DG+ I + R G V H T A++
Sbjct: 691 PKRSSLPKGWSAADMDLDKALQLLSLPREVGPHPEDGKMISAGIGRYGPFVLHEGTYANL 750
Query: 1117 PKNMKPNDVTLEKALEFLSGKDVRRCGR 1144
+ V + +A++ L+ K + GR
Sbjct: 751 SSPDEVFSVGINRAVDALAEKRAKGGGR 778
>gi|163759334|ref|ZP_02166420.1| putative DNA topoisomerase I [Hoeflea phototrophica DFL-43]
gi|162283738|gb|EDQ34023.1| putative DNA topoisomerase I [Hoeflea phototrophica DFL-43]
Length = 919
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/806 (44%), Positives = 496/806 (61%), Gaps = 32/806 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG ++VL S+GHVRDL A+ GSV PD+DF+M WEV +A+
Sbjct: 42 NVVVVESPAKAKTINKYLGAGFKVLASFGHVRDLPAKDGSVLPDEDFAMSWEVDTASNKR 101
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK I AL GA++LILA+DPDREGEAI+WH++E+L ++ AL + +V RVVF+ IT+ S+
Sbjct: 102 LKDITEALKGADSLILATDPDREGEAISWHVLEVLNKKKALKDK-SVKRVVFNAITKKSV 160
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ REID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 161 LDAMENPREIDTPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 220
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A L F A L ++LN++S+ + A DI
Sbjct: 221 ESEIERFVSEEYWQISADLKTPRGDG-----FTARLVSHDGEKLNKMSVTNGDVAGDIRT 275
Query: 591 KINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ SA+FQV + + R+NP+ P+ TSTLQQ A++KL F+A+ TM++AQKLYEG+ +
Sbjct: 276 MLESASFQV-DSVEAKPTRRNPSAPFTTSTLQQAASSKLGFNASRTMQVAQKLYEGIDI- 333
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA E R I R+GS + P++ PR Y K KNAQEAHEA
Sbjct: 334 GGETVGLITYMRTDGVQMAPEAITEAREAISTRFGSRYVPDQ-PRIYSTKAKNAQEAHEA 392
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI---GNADESIV 766
IRPT R P L LD D L+LY LIW R A QM A + + V+I GN ++
Sbjct: 393 IRPTGFERAPDDLKRYLDADQLRLYDLIWKRATASQMASAEIERTSVEITASGNG-KTAG 451
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEEND-RHEAFAILNSLKTGDPLYLGEVELK 825
R++ S + F GF AAY D ++ E++D E A L + + + ++
Sbjct: 452 LRATGSVIRFDGFIAAYTDTK------EDGEQSDGDDEDGARLPEINAKEAVDKEKINAT 505
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PP R+SE SL+KK+EELGIGRPSTYASTL L+DR YV + R L PE +GR+V
Sbjct: 506 QHFTEPPPRFSEASLIKKMEELGIGRPSTYASTLATLRDREYVVIDKRRLIPEPKGRLVI 565
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
AFL ++F ++ FTAD+E +LD +SAG WK +L ++W +F ++ + L + QV
Sbjct: 566 AFLENFFERYVEFGFTADLEEKLDRISAGELAWKDVLREFWVQFHAHIDDTKELRVSQVL 625
Query: 946 KMLEKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
L + +F + R CP CG G L K+ ++GA F+GC+ +P CN+ +
Sbjct: 626 DALNEALAPLVFPVREDGSNPRICPTCGTGNLSLKLGKYGA--FVGCSNYPDCNFTRQLS 683
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
D D N EPK +G P ++E + L++G +G YVQ GE G KR+S+
Sbjct: 684 ADQDASGDAALSN----EPKDLGKDPHTEEPITLRTGRFGPYVQRGE---GKEAKRSSLP 736
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
VDSI E AL LL P ++G HP+ G+ I L R G V H +T A++
Sbjct: 737 KGWAVDSIDHEKALALLSLPRDIGQHPETGKMISAGLGRYGPFVLHEKTYANLESIEDVF 796
Query: 1124 DVTLEKALEFLSGKDVRRCGRPKGKP 1149
+ L +A+ ++ K + GR +G P
Sbjct: 797 SIGLNRAVSVIAEKIAKGPGRGRGTP 822
>gi|154253271|ref|YP_001414095.1| DNA topoisomerase I [Parvibaculum lavamentivorans DS-1]
gi|154157221|gb|ABS64438.1| DNA topoisomerase I [Parvibaculum lavamentivorans DS-1]
Length = 894
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/806 (43%), Positives = 497/806 (61%), Gaps = 46/806 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
VV+VES KAK I YLG ++VL SYGHVRDL ++ GSV PD DF+M W+V + +
Sbjct: 2 DVVIVESPAKAKTINKYLGKGFKVLASYGHVRDLPSKDGSVLPDQDFAMAWDVDAKSQKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ GA+ LILA+DPDREGEAI+WH++E+L ++ L +++ V RVVF+ IT+ S+
Sbjct: 62 LNEIATAVKGADRLILATDPDREGEAISWHVLEVLNKKKVL-KDVEVQRVVFNAITKKSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R +D L+ AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LICDR
Sbjct: 121 TEAMEHPRGLDKELIDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI+ F+ QEYWTVEA D K F A LT K+L++ I A DIE
Sbjct: 181 ELEIEAFRSQEYWTVEA--DMKTGGG---SPFVARLTVLDGKKLDKFDIPDKKSADDIEA 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I ++ F V K+ + R+NP P + TST+QQ+A+ KL FSA+ TM++AQ+LYEGV++
Sbjct: 236 RIKASRFSV-KSVESKPTRRNPNPPFTTSTIQQEASRKLGFSASRTMQVAQRLYEGVEI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
DG GLITYMRTDG+ I+ EA + R++I +G + P+ PR Y K KNAQEAHEA
Sbjct: 294 DGETTGLITYMRTDGVQIAPEAIAQARTVINNEFGEAYLPD-APRVYTTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPTD+ RLP + LD+D +LY L+W+RT+A QM+ + + ++I D I R+
Sbjct: 353 IRPTDLSRLPKHAAKYLDDDQRRLYELVWNRTIASQMESVQLERTTIEIEADDAPIGLRA 412
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S + F GF Y++ +E D E L + GD L L +V +QH T
Sbjct: 413 TGSVIVFDGFLRLYQE---------GRDEPDDGEDGGRLPKVARGDKLGLEKVRPEQHFT 463
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP R++E S+VK++EELGIGRPSTYASTL+ L+DR+YV + L P+ +GR+V+AFL
Sbjct: 464 EPPPRFTEASIVKRMEELGIGRPSTYASTLQTLRDRDYVHMDKNRLVPQDKGRLVTAFLE 523
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
++F+ +Y FTA++E +LD VSAG +WK LL ++W F+ A L I +V L
Sbjct: 524 NFFTRYVEYDFTAELEEKLDKVSAGELDWKDLLREFWKEFTVNVAEALELRITEVLDRLN 583
Query: 950 KTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
+ G +F P K+ R+CP CG G L KV RFGA F+GC+ +P C + +
Sbjct: 584 EVLGPHVF---PEKEDGSNPRACPSCGNGILSLKVGRFGA--FVGCSNYPDCKFTRQLTV 638
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQ---LGEDRTGYLPKRAS 1061
G + EE R ++G P + +V LK+G +G YV+ LG+D PKR+
Sbjct: 639 GAEGEEQAGDR--------VLGTDPETGAEVSLKTGRFGPYVERAPLGDDEK---PKRSG 687
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + L+ AL LL P +G HP+ G+ I L R G V H T A++ +
Sbjct: 688 LPAKMSAADVDLDTALRLLTLPREIGIHPETGKKITAGLGRFGPFVLHDGTYANLKDPEE 747
Query: 1122 PNDVTLEKALEFLSGKDVR---RCGR 1144
D+ L +A+ L+ K +R R G+
Sbjct: 748 LFDIGLNRAIAVLAEKVIRAEERAGK 773
>gi|265985428|ref|ZP_06098163.1| DNA topoisomerase I [Brucella sp. 83/13]
gi|264664020|gb|EEZ34281.1| DNA topoisomerase I [Brucella sp. 83/13]
Length = 877
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/803 (44%), Positives = 488/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 62 LSDIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 181 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ ANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLEGANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 354 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTKFDGFLAAYMD---------HREEEDDDEDSAKLPEIRSGEALAREKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+T+ R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYITIDKRKLIPEAKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEVLRDFWRAFSGSVEDIKELRVTNVLDAL 584
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG G L K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 585 NEELAPLVFPAREDGSDPRSCPTCGTGVLSLKLGRYGA--FVGCSNYPECKYT-RQLGGE 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 642 ANGE-----TAASDEPKPLGKDPFTGEEITARTGRFGPYIQRGE---GKEAKRASLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|197104783|ref|YP_002130160.1| DNA topoisomerase I [Phenylobacterium zucineum HLK1]
gi|196478203|gb|ACG77731.1| DNA topoisomerase I [Phenylobacterium zucineum HLK1]
Length = 878
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/799 (44%), Positives = 491/799 (61%), Gaps = 38/799 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VV+VES KAK I YLG Y+VL SYGHVRDL A+ GSVRPD+DF+M W+V + A
Sbjct: 2 NVVIVESPAKAKTINKYLGSDYKVLASYGHVRDLPAKDGSVRPDEDFAMSWDVDAKAAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A GA+ +ILA+DPDREGEAI+WH++E+LQ++ AL ++ V RVVF+ IT++++
Sbjct: 62 LSEIAEAAKGADRVILATDPDREGEAISWHVLEVLQKKRAL-KDAKVQRVVFNAITKSAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ RE+D LV+AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LI DR
Sbjct: 121 TEAMANPRELDMELVEAYLARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLIVDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI+ F+ QEYWTVEA + + D F+ A L + KRL++ +G+ A
Sbjct: 181 ELEIERFRTQEYWTVEAEV----AAGGDPFT--ARLVKHEGKRLSKFDLGNEASAFAARD 234
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +A F+V ++ R P P+ TSTLQQ+AA KL FSA TM+ AQKLYEGV +
Sbjct: 235 AVKAATFKVAAVERKPGRRSPPPPFTTSTLQQEAARKLGFSAQRTMQAAQKLYEGVDI-G 293
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ + EA E R++I YG + PE+ PR Y K KNAQEAHEAI
Sbjct: 294 GETVGLITYMRTDGVQTAPEALDEARAVIGGLYGKDYVPEK-PRFYSTKAKNAQEAHEAI 352
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT + R P L L+ D +LY LIW R +A QM+ A + + +D+ +AD R++
Sbjct: 353 RPTSLGRNPGKLR--LEGDLGRLYELIWKRMIASQMESARIERTTIDLESADGRTGLRAT 410
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
V F G+ A YE E ++ E L + G + + + QH T+
Sbjct: 411 GQVVTFPGYLAVYE----------EGRDDPEDEEGGRLPQVAEGAQATVRQAKADQHFTE 460
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKK+EELGIGRPSTYAS L+ L+DR+YV ++ + PE +GR+V+ FL
Sbjct: 461 PPPRYSEASLVKKMEELGIGRPSTYASILERLRDRSYVRMEKQRFVPEDQGRIVTIFLEE 520
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + +Y FTAD+E +LD VSAG +WK LL ++W+ F++ + +V L++
Sbjct: 521 FFGKYVEYDFTADLEDQLDQVSAGDLDWKVLLKNFWADFNAKVGELGQIGTREVIDALDE 580
Query: 951 TFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
+ +LF + + R CP CG G L K SR GA FIGC+ +P C + +G D
Sbjct: 581 SLASTLFPPMADGSDPRVCPRCGSGRLSLKPSRTGA--FIGCSNYPECRFTRP--FGPPD 636
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDV 1068
E + +G P + E V LK+G +G YVQLGE G PKR+S+ V
Sbjct: 637 AE-----GAEASGDRDLGTDPQTGETVWLKAGRFGPYVQLGE---GEKPKRSSLPKGWSV 688
Query: 1069 DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
+ LE AL LLR P +G HP+DG+PI+ + R G V+H T A++P + +V L
Sbjct: 689 ADMDLEKALRLLRLPREIGPHPEDGKPILAGIGRYGPFVQHNGTYANLPSVDEVFEVGLN 748
Query: 1129 KALEFLSGKDVRRCGRPKG 1147
+A++ ++ K R G +G
Sbjct: 749 RAVDLIATK---RAGGKRG 764
>gi|374292271|ref|YP_005039306.1| DNA topoisomerase I [Azospirillum lipoferum 4B]
gi|357424210|emb|CBS87077.1| DNA topoisomerase I [Azospirillum lipoferum 4B]
Length = 928
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/829 (43%), Positives = 492/829 (59%), Gaps = 78/829 (9%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G +VV+VES KAK I YLGD Y V+ S+GHVRDL AR GSVRPD+DF+M WE+ +
Sbjct: 3 GSNVVIVESPAKAKTINKYLGDDYTVIASFGHVRDLPARDGSVRPDEDFAMEWELGDRSK 62
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ I A+ A+ + LA+DPDREGEAIAWH+ E+L+++ L +N V R+ F+EIT++
Sbjct: 63 RHIDEIAKAVKSADRVYLATDPDREGEAIAWHLSELLREKH-LTDNRDVQRITFNEITKS 121
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+++ A+ R++ LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC
Sbjct: 122 AVQAAIANPRDVSRELVDAYLARRALDYLVGFTLSPVLWRKLPGSKSAGRVQSVALRLIC 181
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI+ FKPQEYW++ F A LT KRL++ + + A+
Sbjct: 182 ERESEIEVFKPQEYWSIAVGFTTPAGAG-----FTASLTQLDGKRLDKFGLPNREAAEAA 236
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
KI +F V + +R R+NP+P + TSTLQQ+A+ KL F AT TM+ AQKLYEGV
Sbjct: 237 VAKILPQSFAV-SSVERKQSRRNPSPPFTTSTLQQEASRKLGFGATRTMRTAQKLYEGVD 295
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ G GLITYMRTDG+ +S EA RSLI +YG + P + PR Y KNAQEAH
Sbjct: 296 I-GGETVGLITYMRTDGVSLSQEAIDGARSLIGSQYGERYVPAQ-PRVYKTAAKNAQEAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPTD++R P ++G L+ D L+LY LIW RT+A QM+ A + Q+ VDI N + +V
Sbjct: 354 EAIRPTDLQRRPDSVAGYLESDELRLYELIWKRTLASQMESAVLDQVAVDIANPSKDVVL 413
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S V F GF Y++ A + E L ++ GD L G++ QH
Sbjct: 414 RATGSIVVFDGFLKVYQEDRDDAAEDDQQERR--------LPAMDQGDALARGDIAQDQH 465
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RYSE SLVKKLEELGIGRPSTYAS L+VLQDRNYV + R PE RGR+V+AF
Sbjct: 466 FTQPPPRYSEASLVKKLEELGIGRPSTYASILQVLQDRNYVRLDKRRFIPEDRGRLVTAF 525
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L ++F +Y+FTA++E +LD +S G +WK +L D+W+ F + L I QV
Sbjct: 526 LENFFHRYVEYNFTAELENQLDEISDGKIDWKTVLRDFWTAFDVAVNGTKDLTITQVLTT 585
Query: 948 LEKTFGDSLF--ASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
L+ G F A+ D R CPVC EG L K+ + GA FIGC+++P C Y + L
Sbjct: 586 LDNELGAHFFPAATADGHDPRVCPVCREGRLGLKLGKMGA--FIGCSRYPECRY-TRPLA 642
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGY--------- 1055
+DE Q P+ +G+ P + V ++ GPYG Y+QLG T
Sbjct: 643 VANDENGEAQEG-----PRELGNDPETGLPVTVRRGPYGAYIQLGPAPTVAAPPEEPAVE 697
Query: 1056 --------------------------LPKRASVSHIKDVDSITLEDALELLRYPVNLGNH 1089
LPK + + DVD L+ AL+LL P +GNH
Sbjct: 698 EPAADGKKPKAKKKKKDEAPKPKRVSLPKGMAAA---DVD---LDTALKLLALPRTIGNH 751
Query: 1090 PKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND----VTLEKALEFL 1134
P+ G+ I + R G ++H SV K++ P+D + + +A++ L
Sbjct: 752 PETGEEISAGIGRFGPYLKH----GSVYKSLTPDDDVLTIGINRAVDLL 796
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 15/121 (12%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ IG+HP + E++ G +G Y++ G P DV +I + A++LL
Sbjct: 745 PRTIGNHPETGEEISAGIGRFGPYLKHGSVYKSLTPD-------DDVLTIGINRAVDLLA 797
Query: 1082 YPV--------NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEF 1133
LG+HPK G+PI + R G V+H AS+PK +P+ VTLE+ALE
Sbjct: 798 GAAKKASAPAKTLGDHPKTGKPITMGSGRFGPYVKHASVYASIPKGTEPDSVTLEQALEL 857
Query: 1134 L 1134
+
Sbjct: 858 I 858
>gi|62317539|ref|YP_223392.1| DNA topoisomerase I [Brucella abortus bv. 1 str. 9-941]
gi|62197732|gb|AAX76031.1| TopA, DNA topoisomerase I [Brucella abortus bv. 1 str. 9-941]
Length = 877
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/803 (44%), Positives = 489/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 62 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 181 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 354 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEILRDFWRAFSGSVEDIKELRVTNVLDAL 584
Query: 949 EKTFGDSLF-ASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F A +D RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 585 NEELAPLVFPAREDGRDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKY-TRQLGGE 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KR S+
Sbjct: 642 ANGE-----TAASDEPKPLGKDPFTGEQITARTGRFGPYIQRGE---GKEAKRTSLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|261217221|ref|ZP_05931502.1| DNA topoisomerase I [Brucella ceti M13/05/1]
gi|260922310|gb|EEX88878.1| DNA topoisomerase I [Brucella ceti M13/05/1]
Length = 877
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/803 (44%), Positives = 488/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 62 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 181 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S NF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLESTNFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 354 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L I V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEVLRDFWRAFSGSVEDIKELRITNVLDAL 584
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 585 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKY-TRQLGGE 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 642 ANGE-----TAASDEPKPLGKDPFTGEEITARTGRFGPYIQRGE---GKEAKRASLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|261320092|ref|ZP_05959289.1| DNA topoisomerase I [Brucella ceti M644/93/1]
gi|261292782|gb|EEX96278.1| DNA topoisomerase I [Brucella ceti M644/93/1]
Length = 877
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/803 (44%), Positives = 488/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 62 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 181 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S NF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLESTNFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 354 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEVLRDFWRAFSGSVEDIKELRVTNVLDAL 584
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 585 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKYT-RQLGGE 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 642 ANGE-----TAASDEPKPLGKDPFTGEEITARTGRFGPYIQRGE---GKEAKRASLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|148558504|ref|YP_001257591.1| DNA topoisomerase I [Brucella ovis ATCC 25840]
gi|148369789|gb|ABQ62661.1| DNA topoisomerase I [Brucella ovis ATCC 25840]
Length = 877
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/803 (44%), Positives = 488/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 62 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKTV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 181 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + + + + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAINAARDAITKSFSAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 354 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTKFAGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEVLRDFWRAFSGSVEDIKELRVTNVLDAL 584
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 585 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKYT-RQLGGE 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 642 ANGE-----TAASDEPKPLGKDPFTGEEITARTGRFGPYIQRGE---GKEAKRASLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|88657600|ref|YP_507548.1| DNA topoisomerase I [Ehrlichia chaffeensis str. Arkansas]
gi|88599057|gb|ABD44526.1| DNA topoisomerase I [Ehrlichia chaffeensis str. Arkansas]
Length = 820
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/791 (43%), Positives = 497/791 (62%), Gaps = 40/791 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+++VES +KAK I YLG Y+V+ S+GH+RD A+SGSV PD DF+M +E+ S + +
Sbjct: 2 SLIIVESPSKAKTISKYLGSKYKVVASFGHIRDFPAKSGSVDPDKDFAMTYEIISKSEKY 61
Query: 411 L-KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ K I+VA + + LA+DPDREGEAIAWHI+E+L++ +A+ +N+ + R+VF+E+T+++
Sbjct: 62 VNKLIQVANKETQGIYLATDPDREGEAIAWHIIEVLKENNAIDDNVVINRMVFNEVTKSA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I +++ R I+ +LV A ARRALDYL+GF +SPLLWRKLPG +SAGRVQS AL LICD
Sbjct: 122 ILESIKRPRSINMDLVYAQQARRALDYLVGFTLSPLLWRKLPGSKSAGRVQSVALRLICD 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE +I++F QEYW +EA E F A L+ + K+L + I + +A+ +
Sbjct: 182 RESDIEKFITQEYWDIEAKCCNTEGK-----QFSAFLSCYAGKKLEKFDIKNEEDAQKLS 236
Query: 590 QKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ S ++ VI N ++ ++NP P+ITS+LQQ+A+ KL F+A TM +AQKLYEG+ +
Sbjct: 237 EEVRSRSYSVI-NVEKKHTKRNPYPPFITSSLQQEASTKLGFTAKNTMLIAQKLYEGIDV 295
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G GLITYMRTDG +I+DEA + IRS+I +G + PE RKY KKVKNAQEAHE
Sbjct: 296 -GGEIVGLITYMRTDGFYIADEALEHIRSIIVSMFGKEYLPESA-RKYVKKVKNAQEAHE 353
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT+I P LS L + LKLY LIW RT+A QM A + Q+ V++G+ D+ + R
Sbjct: 354 AIRPTNITITPGSLSNYLTPEQLKLYDLIWKRTVASQMNSAVIDQVIVELGSLDKVVTLR 413
Query: 769 SSCSRVEFLGFQAAY---EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
++ S + F GF Y ED D+ K N +L L+ D L EV
Sbjct: 414 ATGSSLFFDGFYKVYGHGEDDDS-----KNN----------MLPLLQKNDKCPLDEVVPH 458
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T PPARY+E SLVKK+EE+GIGRPSTYAS + VLQDR YV + + +P RGR+V+
Sbjct: 459 QHFTNPPARYNEASLVKKMEEIGIGRPSTYASIISVLQDRQYVILNQKRFFPTERGRIVN 518
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
FL ++FS +Y FTAD+E +LD +S G WK +L +W F + L +V
Sbjct: 519 VFLVNFFSRYVEYDFTADLEEKLDLISNGKINWKEVLHQFWFLFIDNVNSVKKLEFTEVL 578
Query: 946 KMLEKTFGDSLFASLPNK-DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
K++ + +F+S ++ R CPVC +GTL +S+ G F+GC+++P C Y
Sbjct: 579 KVISCEMENYIFSSDKSESSRVCPVCNDGTLELNISK--NGIFLGCSKYPECKYTKNVGS 636
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSH 1064
G D+ D Q PK++G A+ +++ LK GPYG Y+Q+G D++G KRA++
Sbjct: 637 GIVDDTDNTQY------PKILGIDAATGQEIYLKKGPYGLYLQIGNDKSG---KRAAIPK 687
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
D + + L+ A ++L P++LG HP GQ I L L + G + + SV D
Sbjct: 688 NIDANLLDLQMAEKILSLPISLGTHPDTGQEIKLGLGKFGAYILYGGKYFSVKNEHNFLD 747
Query: 1125 VTLEKALEFLS 1135
+++E A+ ++
Sbjct: 748 ISIENAINIIA 758
>gi|393768865|ref|ZP_10357396.1| DNA topoisomerase I [Methylobacterium sp. GXF4]
gi|392725693|gb|EIZ83027.1| DNA topoisomerase I [Methylobacterium sp. GXF4]
Length = 895
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/815 (42%), Positives = 494/815 (60%), Gaps = 41/815 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG YEV+ S+GH+RDL A+ GSV P+ DF MVWE+ + +
Sbjct: 3 VVVVESPAKAKTINKYLGRDYEVIASFGHIRDLPAKDGSVDPEQDFHMVWELADRGASRV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ GA+ LILA+DPDREGEAI+WH++E L + AL + I V RV F+ IT+AS++
Sbjct: 63 SEIAKAVKGADKLILATDPDREGEAISWHVLEALNARKAL-KGIPVERVTFNAITKASVE 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ REID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+ +RE
Sbjct: 122 AAMRKPREIDQALVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVVERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ FKP+EYW++ A L + D +F A L KR+ +L +G+ EA ++
Sbjct: 182 MEIESFKPREYWSIVATL-----TTTDGATFEARLVGADGKRIQRLDVGTGDEAAAFKRD 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A FQV + R P+ TSTLQQ+A+ KL + TM++AQ+LYEGV + G
Sbjct: 237 LELATFQVASVEAKPAKRHPQPPFTTSTLQQEASRKLGMAPAQTMRVAQRLYEGVDV-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G+ITYMRTDG+ ++ EA ++ R +I + +G + P+ PRKY K KNAQEAHEA+R
Sbjct: 296 ETVGIITYMRTDGVDMAPEAIQDTRKVIGKEFGDRYVPDV-PRKYSVKAKNAQEAHEAVR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFRS 769
PTD+ RLP M++ L+ + KLY LIW+RTMA QM+ A + + VD+ I R+
Sbjct: 355 PTDMSRLPKMVARHLEPEQAKLYDLIWTRTMASQMESAELERTTVDVTANVGPRRIDLRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ V+F GF A Y+ E ++++ E L +K GDPL + QH T
Sbjct: 415 TGQVVKFDGFLALYQ----------EGKDDEEDEESKRLPPMKAGDPLTRERITATQHFT 464
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE SLVK++EELGIGRPSTYA+ L+ L+DR YV ++ + L PE +GR+V+ FL
Sbjct: 465 EPPPRYSEASLVKRMEELGIGRPSTYAAVLQTLRDREYVKIEKKRLQPEDKGRLVTGFLE 524
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F +Y FTAD+E +LD VS +W+ +L D+W FS+ + L + V + L
Sbjct: 525 SFFRRYVEYDFTADLEGQLDRVSNAEIDWRAVLRDFWKDFSAAIGETKELRVTDVLEALN 584
Query: 950 KTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYI----A 1000
G +F P+K R+C VCG G L K+ +FGA FIGC+ +P C Y A
Sbjct: 585 GLLGPHIF---PDKGDGSNPRTCSVCGTGQLSLKLGKFGA--FIGCSNYPECKYTRQLSA 639
Query: 1001 KTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE---DRTGYLP 1057
+ GD D V +++G+ P + V ++ G +G +VQLGE ++ P
Sbjct: 640 SGVDGDGDGSSAEGGQPGV---RVLGNDPVTGMPVTIRDGRFGPFVQLGEASTEKDAAKP 696
Query: 1058 KRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVP 1117
KR+S+ S+ L+ AL LL P + HP+ G+PI+ L R G V+H +T A++
Sbjct: 697 KRSSLPKGLSPSSVDLDKALALLSLPREVARHPETGEPILANLGRFGPYVQHGKTYANLG 756
Query: 1118 KNMKPNDVTLEKALEFLSGKDVRRC-GRPKGKPKR 1151
K+ +V +A++ + K+ GRP P R
Sbjct: 757 KDDDVLEVGANRAIDLIVAKEQGGGRGRPAADPGR 791
>gi|114327468|ref|YP_744625.1| DNA topoisomerase I [Granulibacter bethesdensis CGDNIH1]
gi|114315642|gb|ABI61702.1| DNA topoisomerase I [Granulibacter bethesdensis CGDNIH1]
Length = 909
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/811 (43%), Positives = 486/811 (59%), Gaps = 42/811 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL S+GHVRDL + GSVRPD DF+M WE +
Sbjct: 15 VVVVESPAKAKTINKYLGGNYTVLASFGHVRDLPPKDGSVRPDQDFAMDWEADERGRKQV 74
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GAE L LA+DPDREGEAI+WH+ ML++ AL + + V R+ F+EIT +I+
Sbjct: 75 AAIAKALKGAETLYLATDPDREGEAISWHVRAMLEEARAL-KGVEVRRITFNEITRNAIR 133
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D L++AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 134 HAIEHPRDLDQPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 193
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFP--AHLTHFQSKRLNQLSIGSHTEAKDIE 589
EI+ F+P+EYWTVE +H P A LTH K+L+Q + + A
Sbjct: 194 AEIEVFRPREYWTVE-------THFFTPAGAPFTARLTHLDGKKLDQFDLNTEALAMRAR 246
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ F V ++ + R P P+ TSTLQQ+++ KL F A TM+LAQ+LYEGV++
Sbjct: 247 ALVEQGQFHVGMIERKKVKRNPPPPFTTSTLQQESSRKLGFGAQATMRLAQQLYEGVEI- 305
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA IR + + YG + P PR+Y K KNAQEAHEA
Sbjct: 306 GGETVGLITYMRTDGVQMAREAMFSIRDHVKDSYGLDYLPA-APREYSSKAKNAQEAHEA 364
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI----GNADESI 765
IRPTD+ R P ++ L+ + +LY L+W R +A QMQ A + Q+ VDI G+A +S+
Sbjct: 365 IRPTDVERTPDSVARYLNPEQRRLYELVWKRAVASQMQSAELDQVTVDIFPQTGDA-KSV 423
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
R++ S + F GF Y +E +++ E +L + DPL V+
Sbjct: 424 QLRATGSIIAFDGFLKLY----------REGQDDTEEEEGRMLPPMAERDPLRQDRVDAS 473
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH TQPP RYSE SLVK++EELGIGRPSTYAS L VLQDRNYV + R +PE RGR+V+
Sbjct: 474 QHFTQPPPRYSEASLVKRMEELGIGRPSTYASILSVLQDRNYVRLDKRRFHPEDRGRLVT 533
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
AFL+ +F D +FTA +ET+LD +S G +W+ ++ +W F + L I V
Sbjct: 534 AFLTSFFERYVDTNFTASLETQLDEISDGRADWRQVMQAFWQDFYQAVEQTKDLKISDVI 593
Query: 946 KMLEKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT- 1002
L++ G F + + R CP CG+G L ++ R G+ FIGC+ +P C+Y +
Sbjct: 594 DALDRDLGPHFFPTREDGTDPRICPACGDGRLGLRLGRHGS--FIGCSNYPGCSYTRRLG 651
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTG--YLPKRA 1060
+ G + E +TL+ V +G HP + E + +K GPYG YVQ GE G P+RA
Sbjct: 652 IDGAEGEAETLKEGMRV-----LGQHPETGEDITVKRGPYGLYVQQGEAEEGSKKKPRRA 706
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
S+ D ++I L+ AL LL P +G HP+ G+PI L R G V+ ++ K+
Sbjct: 707 SLPRGVDGETILLDQALGLLSLPRLVGIHPETGEPIEANLGRFGPYVKMGGIYGNLDKDD 766
Query: 1121 KPNDVTLEKALEFLSGK--DVRRCG-RPKGK 1148
V L +A++ L+ K +R G PK K
Sbjct: 767 DVLTVGLNRAVDVLAKKMASIRTLGTHPKDK 797
>gi|339021131|ref|ZP_08645243.1| DNA topoisomerase I [Acetobacter tropicalis NBRC 101654]
gi|338751748|dbj|GAA08547.1| DNA topoisomerase I [Acetobacter tropicalis NBRC 101654]
Length = 898
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/793 (44%), Positives = 483/793 (60%), Gaps = 28/793 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD Y VL S+GHVRDL + GSVRPD+ F+M W+ +
Sbjct: 4 VVVVESPAKAKTINKYLGDGYTVLASFGHVRDLPPKDGSVRPDEGFAMSWQSDERGTKQV 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GA++L LA+DPDREGEAI+WH+ ML+++ AL + + V RV F+EIT+++IK
Sbjct: 64 AAIIKALRGAKHLYLATDPDREGEAISWHVRSMLEEKKAL-KGVEVQRVTFNEITKSAIK 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ RE+D L++AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 YAMAHPRELDFPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+P+EYWTV A L F A LTH K+L+Q + + A+ +
Sbjct: 183 AEIEVFQPREYWTVTASLTTPSGAP-----FTARLTHLDGKKLDQFDLANAELAEAARKA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ + N V K+ +R VR+NP P + TSTLQQ+A+ KL A TM+ AQ+LYEG+ L
Sbjct: 238 VEAENLSV-KSVERRKVRRNPQPPFTTSTLQQEASRKLGMGAQVTMRTAQQLYEGIDL-G 295
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA IRS I + G ++ P + PR Y K KNAQEAHEAI
Sbjct: 296 GETVGLITYMRTDGVQMAGEAIGAIRSHIGKHIGENYVPAQ-PRHYTSKAKNAQEAHEAI 354
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ R P+ ++ L +D +LY LIW R +A QM+ A + Q+ VDI V R++
Sbjct: 355 RPTDVFRTPSSVASHLTQDQRRLYELIWKRAVASQMESAALDQVAVDIAGPSGKTVLRAN 414
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF Y + +++ + + +L ++ DPL +V+ QH TQ
Sbjct: 415 GSIITFDGFLRLYTE-------GRDDSDKPADDESRMLPPMQERDPLKREDVKADQHFTQ 467
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP R+SE SLVKK+EE+GIGRPSTYAS L VL+DRNYVT+++R PE RGR+V+AFL
Sbjct: 468 PPPRFSEASLVKKMEEIGIGRPSTYASILTVLRDRNYVTLENRRFVPEARGRLVTAFLVS 527
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F D FTA +E LD++S G EWK +L +W FS + L I V L++
Sbjct: 528 FFERYVDTKFTASLEELLDDISGGRAEWKQVLASFWHDFSKAVDDTKELTITDVLNALDQ 587
Query: 951 TFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
G F P+ R C CG G L K+ R+GA FIGC+ +P C Y + D
Sbjct: 588 DLGPFFFPPRPDGSDPRHCTACGTGRLGLKLGRYGA--FIGCSNYPECQYTRR--LSADS 643
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLPKRASVSH 1064
ED + D +++G HP + E + ++ GP+G YVQ G ED+ PKRAS+
Sbjct: 644 AEDGDGSSALKDGMRVLGQHPETGEDITVRQGPWGLYVQQGEPDPEDKKAK-PKRASLPK 702
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
D + ITL+ A+ LL P +G HP+ G+PI L R G V+ S+ K+
Sbjct: 703 GLDGEKITLDQAVGLLSLPRLVGIHPETGEPIQAGLGRFGPFVKMGAVYGSLDKDDDVLT 762
Query: 1125 VTLEKALEFLSGK 1137
+ L +A++ L+ K
Sbjct: 763 IGLNRAVDALAKK 775
>gi|261313329|ref|ZP_05952526.1| DNA topoisomerase I [Brucella pinnipedialis M163/99/10]
gi|261302355|gb|EEY05852.1| DNA topoisomerase I [Brucella pinnipedialis M163/99/10]
Length = 848
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/803 (44%), Positives = 489/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 31 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 90
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 91 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 149
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 150 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 209
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 210 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 264
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 265 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 323
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 324 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 382
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 383 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 442
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 443 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 493
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 494 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 553
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 554 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEVLRDFWRAFSGSVEDIKELRVTNVLDAL 613
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 614 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKY-TRQLGGE 670
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 671 ANGE-----TAASDEPKPLGKDPFTGEEITARTGRFGPYIQRGE---GKEAKRASLPKGW 722
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 723 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 782
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 783 LNRAVSVLADKQSKGGGRGRSTP 805
>gi|421851764|ref|ZP_16284457.1| DNA topoisomerase I [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
gi|371480267|dbj|GAB29660.1| DNA topoisomerase I [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
Length = 897
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/809 (44%), Positives = 497/809 (61%), Gaps = 33/809 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD Y VL S+GHVRDL + GSV PD+DF+M W+ +
Sbjct: 4 VVVVESPAKAKTINKYLGDGYTVLASFGHVRDLPPKDGSVLPDEDFAMKWQSDERGMKQV 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GA L LA+DPDREGEAI+WH+ ML+++ AL + + V RV F+EIT+++I+
Sbjct: 64 AAIAKALKGAHRLYLATDPDREGEAISWHVRAMLEERKAL-KGVDVQRVTFNEITKSAIR 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D L++AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 YAMEHPRDLDFPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKP+EYW+V A L + F A LTH K+L+Q + + A+ ++
Sbjct: 183 AEIEVFKPREYWSVIASLLTPAGAA-----FTARLTHLNGKKLDQFDLHNAELAEAAKKA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ + N V K+ +R VR+NP P + TSTLQQ+A+ KL SA TM+ AQ+LYEG+ L
Sbjct: 238 VEAENLAV-KSIERRKVRRNPQPPFTTSTLQQEASRKLGMSAQTTMRTAQQLYEGMDL-G 295
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA IR I ++ G+ + P + PR Y KVKNAQEAHEA+
Sbjct: 296 GETVGLITYMRTDGVTMAQEAVNAIRQHIGQKIGTEYVPAK-PRIYTSKVKNAQEAHEAV 354
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ R P ++ L+ D +LY L+W R +A QM+ A++ Q+ VDI V R++
Sbjct: 355 RPTDVSRTPESVARFLNNDQRRLYELVWKRAVASQMESASLDQVAVDIAGPSGQTVLRAN 414
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF Y + +++ E + +L S++ DPL +V+ +QH TQ
Sbjct: 415 GSIITFEGFLKLYRE-------GRDDTEKAADDDARMLPSMQEKDPLKREKVDAEQHFTQ 467
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKK+EELGIGRPSTYAS L VLQDR+YV +++R PE RGR+V+AFL
Sbjct: 468 PPPRYSEASLVKKMEELGIGRPSTYASILTVLQDRSYVRLENRRFIPEARGRLVTAFLVS 527
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F D FTA +E LD++S G +WK +L +W+ FS + + L I V L+K
Sbjct: 528 FFERYVDTGFTASLEELLDDISGGRAQWKQVLAAFWNDFSKAVSGTKELTITDVLNALDK 587
Query: 951 TFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
G F + R CP CG G L K+ R+GA FIGC+ +P C Y + +
Sbjct: 588 DLGPFFFPERADGSDPRVCPSCGTGRLGLKLGRYGA--FIGCSNYPECQYTRRLTSDSAE 645
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLPKRASVSH 1064
E D D +L+G +P + E + ++ GP+G YVQ G ED+ PKRAS+
Sbjct: 646 EGDDAALK---DGMRLLGQNPETGEDITVRQGPWGLYVQQGEPNPEDKKAK-PKRASLPK 701
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
+ +SITL+ AL LL P +G HP+ G+PI L R G V+ S+ K+
Sbjct: 702 NINGESITLDQALGLLSLPRLVGIHPETGEPIQAGLGRFGPFVKMGAVYGSLDKDDDVLT 761
Query: 1125 VTLEKALEFLSGK--DVRRCG-RPK-GKP 1149
+ L +A++ L+ K +R G PK G+P
Sbjct: 762 IGLNRAVDALAKKLASIRNLGVHPKDGEP 790
>gi|423712616|ref|ZP_17686916.1| DNA topoisomerase I [Bartonella washoensis Sb944nv]
gi|395411409|gb|EJF77931.1| DNA topoisomerase I [Bartonella washoensis Sb944nv]
Length = 853
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/800 (44%), Positives = 491/800 (61%), Gaps = 29/800 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+V+ S+GHVRDL A+ GSV PD DFSM W+V SA+
Sbjct: 2 NIVIVESPAKAKTINKYLGSQYKVVASFGHVRDLPAKDGSVLPDQDFSMKWDVDSASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L +N V RVVF+ IT+ S+
Sbjct: 62 LNEIAKAVKEADSLILATDPDREGEAISWHILDVLRQKKVL-KNKPVKRVVFNAITKKSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDR
Sbjct: 121 LDAMNNPRDIDISLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F ++YWT+ L ++ SFPA LT F K++ +L I S +A I
Sbjct: 181 ESEIEHFIKEDYWTITTHL-----KTIRNDSFPARLTMFNQKKIGKLDIQSQEQADQIRL 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A ++ + + R P+ TSTLQQ A++KL FSA+ TM++AQKLYEG+++ +
Sbjct: 236 MLEEAEYRTLSVEAKPSKRNPSPPFTTSTLQQAASSKLGFSASRTMQIAQKLYEGIEI-N 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R +I E +GS++ PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GEMAGLITYMRTDGVQIAPEAIDTARKIIHESFGSNYIPEK-PRFYSTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD +R+P+ + LD D KLY LIW R +A QM+ A + + V+I + R
Sbjct: 354 RPTDFQRIPSQIRDFLDNDQAKLYELIWKRAIASQMRSAEIERTTVEIEAQQGENHANLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S + F GF + Y D + +EEN L + TG+ L +VE QH
Sbjct: 414 ATGSVIRFDGFISVYTD--------QRDEENSEENETTRLPQMNTGEALTKEKVESIQHS 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KKLEELGIGRPSTYASTL L DR Y+ + R L P+ +GR+V+AFL
Sbjct: 466 TEPPPRYSEASLIKKLEELGIGRPSTYASTLATLCDRGYIVIDKRKLIPDVKGRIVTAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F+ +Y FTAD+E +LD +S G WK +L D+W+ F++ Q L I V +L
Sbjct: 526 ENFFNRYVEYGFTADLEEKLDLISDGKLSWKDVLHDFWNGFNASIASIQELRITNVLDVL 585
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
T F + RSCP+C G L K+ R+GA F+GC+ +P C Y + L D
Sbjct: 586 NVTLAPLAFPVREDGSDVRSCPLCTNGQLSLKLGRYGA--FVGCSNYPECKY-TRQLGTD 642
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
EE+ RN DEP +G P + + + L++G +G Y+QLGE++ KRA +
Sbjct: 643 TGEENEAMRN---DEPVTLGIDPKTGKDISLRNGRFGPYIQLGENKEA---KRAGLPKEW 696
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+ IT + AL LL P +G HP+ G+ I + R G + H A + + D+
Sbjct: 697 QTEKITFDKALALLSLPREIGIHPETGKIIKATIGRYGPYLMHDGKYAPLLHADEIFDIG 756
Query: 1127 LEKALEFLSGKDVRRCGRPK 1146
+ +A+ L+ K + R +
Sbjct: 757 INRAVTVLAEKQENKTKRSR 776
Score = 46.2 bits (108), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 23/132 (17%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
P+ IG HP + + + G YG Y+ + K A + H ++ I + A+ +L
Sbjct: 713 PREIGIHPETGKIIKATIGRYGPYLM-------HDGKYAPLLHADEIFDIGINRAVTVLA 765
Query: 1081 ----------RYPVN----LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
R ++ LG HP DG + +R R G V + A++PK+ P +VT
Sbjct: 766 EKQENKTKRSRTTISALATLGEHP-DGGTVTIRNGRYGPYVNWGKINATLPKDKDPINVT 824
Query: 1127 LEKALEFLSGKD 1138
L +ALE +S K+
Sbjct: 825 LSEALELISAKE 836
>gi|258541848|ref|YP_003187281.1| DNA topoisomerase I [Acetobacter pasteurianus IFO 3283-01]
gi|384041769|ref|YP_005480513.1| DNA topoisomerase I [Acetobacter pasteurianus IFO 3283-12]
gi|384050284|ref|YP_005477347.1| DNA topoisomerase I [Acetobacter pasteurianus IFO 3283-03]
gi|384053394|ref|YP_005486488.1| DNA topoisomerase I [Acetobacter pasteurianus IFO 3283-07]
gi|384056626|ref|YP_005489293.1| DNA topoisomerase I [Acetobacter pasteurianus IFO 3283-22]
gi|384059267|ref|YP_005498395.1| DNA topoisomerase I [Acetobacter pasteurianus IFO 3283-26]
gi|384062561|ref|YP_005483203.1| DNA topoisomerase I [Acetobacter pasteurianus IFO 3283-32]
gi|384118637|ref|YP_005501261.1| DNA topoisomerase I [Acetobacter pasteurianus IFO 3283-01-42C]
gi|421848504|ref|ZP_16281492.1| DNA topoisomerase I [Acetobacter pasteurianus NBRC 101655]
gi|256632926|dbj|BAH98901.1| DNA topoisomerase I [Acetobacter pasteurianus IFO 3283-01]
gi|256635983|dbj|BAI01952.1| DNA topoisomerase I [Acetobacter pasteurianus IFO 3283-03]
gi|256639038|dbj|BAI05000.1| DNA topoisomerase I [Acetobacter pasteurianus IFO 3283-07]
gi|256642092|dbj|BAI08047.1| DNA topoisomerase I [Acetobacter pasteurianus IFO 3283-22]
gi|256645147|dbj|BAI11095.1| DNA topoisomerase I [Acetobacter pasteurianus IFO 3283-26]
gi|256648202|dbj|BAI14143.1| DNA topoisomerase I [Acetobacter pasteurianus IFO 3283-32]
gi|256651255|dbj|BAI17189.1| DNA topoisomerase I [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654246|dbj|BAI20173.1| DNA topoisomerase I [Acetobacter pasteurianus IFO 3283-12]
gi|371460865|dbj|GAB26695.1| DNA topoisomerase I [Acetobacter pasteurianus NBRC 101655]
Length = 897
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/809 (44%), Positives = 497/809 (61%), Gaps = 33/809 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD Y VL S+GHVRDL + GSV PD+DF+M W+ +
Sbjct: 4 VVVVESPAKAKTINKYLGDGYTVLASFGHVRDLPPKDGSVLPDEDFAMKWQSDERGMKQV 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GA L LA+DPDREGEAI+WH+ ML+++ AL + + V RV F+EIT+++I+
Sbjct: 64 AAIAKALKGAHRLYLATDPDREGEAISWHVRAMLEERKAL-KGVDVQRVTFNEITKSAIR 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D L++AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 YAMEHPRDLDFPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKP+EYW+V A L + F A LTH K+L+Q + + A+ ++
Sbjct: 183 AEIEVFKPREYWSVIASLLTPAGAA-----FTARLTHLNGKKLDQFDLHNAELAEAAKKA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ + N V K+ +R VR+NP P + TSTLQQ+A+ KL SA TM+ AQ+LYEG+ L
Sbjct: 238 VEAENLAV-KSIERRKVRRNPQPPFTTSTLQQEASRKLGMSAQTTMRTAQQLYEGMDL-G 295
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA IR I ++ G+ + P + PR Y KVKNAQEAHEA+
Sbjct: 296 GETVGLITYMRTDGVTMAQEAINAIRQHIGQKIGTEYVPAK-PRIYTSKVKNAQEAHEAV 354
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ R P ++ L+ D +LY L+W R +A QM+ A++ Q+ VDI V R++
Sbjct: 355 RPTDVSRTPESVARFLNNDQRRLYELVWKRAVASQMESASLDQVAVDIAGPSGQTVLRAN 414
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF Y + +++ E + +L S++ DPL +V+ +QH TQ
Sbjct: 415 GSIITFEGFLKLYRE-------GRDDTEKAADDDARMLPSMQEKDPLKREKVDAEQHFTQ 467
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKK+EELGIGRPSTYAS L VLQDR+YV +++R PE RGR+V+AFL
Sbjct: 468 PPPRYSEASLVKKMEELGIGRPSTYASILTVLQDRSYVRLENRRFIPEARGRLVTAFLVS 527
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F D FTA +E LD++S G +WK +L +W+ FS + + L I V L+K
Sbjct: 528 FFERYVDTGFTASLEELLDDISGGRAQWKQVLAAFWNDFSKAVSGTKELTITDVLNALDK 587
Query: 951 TFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
G F + R CP CG G L K+ R+GA FIGC+ +P C Y + +
Sbjct: 588 DLGPFFFPERADGSDPRVCPSCGTGRLGLKLGRYGA--FIGCSNYPECQYTRRLTSDSAE 645
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLPKRASVSH 1064
E D D +L+G +P + E + ++ GP+G YVQ G ED+ PKRAS+
Sbjct: 646 EGDDAALK---DGMRLLGQNPETGEDITVRQGPWGLYVQQGEPNPEDKKAK-PKRASLPK 701
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
+ +SITL+ AL LL P +G HP+ G+PI L R G V+ S+ K+
Sbjct: 702 NINGESITLDQALGLLSLPRLVGIHPETGEPIQAGLGRFGPFVKMGAVYGSLDKDDDVLT 761
Query: 1125 VTLEKALEFLSGK--DVRRCG-RPK-GKP 1149
+ L +A++ L+ K +R G PK G+P
Sbjct: 762 IGLNRAVDALAKKLASIRNLGVHPKDGEP 790
>gi|294853598|ref|ZP_06794270.1| DNA topoisomerase I [Brucella sp. NVSL 07-0026]
gi|294819253|gb|EFG36253.1| DNA topoisomerase I [Brucella sp. NVSL 07-0026]
Length = 886
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/803 (44%), Positives = 488/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 11 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 70
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 71 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 130 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 190 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 244
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYE V +
Sbjct: 245 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYESVDI-G 303
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 304 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 362
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 363 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 422
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 423 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 473
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 474 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 533
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 534 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEVLRDFWRAFSGSVEDIKELRVTNVLDAL 593
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 594 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKY-TRQLGGE 650
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 651 ANGE-----TAASDEPKPLGKDPFTGEEITARTGRFGPYIQRGE---GKEAKRASLPKGW 702
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 703 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 762
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 763 LNRAVSVLADKQSKGGGRGRSTP 785
>gi|261323152|ref|ZP_05962349.1| DNA topoisomerase I [Brucella neotomae 5K33]
gi|261299132|gb|EEY02629.1| DNA topoisomerase I [Brucella neotomae 5K33]
Length = 877
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/803 (44%), Positives = 488/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV RV F+ IT+ ++
Sbjct: 62 LADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVKRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CD
Sbjct: 121 LDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDC 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 181 EAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLDIKNGEQAGAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LDED +LY LIW R +A QMQ A + + VDI N + + R
Sbjct: 354 RPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDIEATNGSRAAMLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEALAREKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKEVLRDFWRAFSGSVEDIKELRVTNVLDAL 584
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ R+GA F+GC+ +P C Y + L G+
Sbjct: 585 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYPECKYT-RQLGGE 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G Y+Q GE G KRAS+
Sbjct: 642 ANGE-----TAASDEPKPLGKDPFTGEEITARTGRFGPYIQRGE---GKEAKRASLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+D++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFANLENVEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|68171244|ref|ZP_00544647.1| DNA topoisomerase I [Ehrlichia chaffeensis str. Sapulpa]
gi|67999326|gb|EAM85972.1| DNA topoisomerase I [Ehrlichia chaffeensis str. Sapulpa]
Length = 820
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/791 (43%), Positives = 496/791 (62%), Gaps = 40/791 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+++VES +KAK I YLG Y+V+ S+GH+RD A+SGSV PD DF+M +E+ S + +
Sbjct: 2 SLIIVESPSKAKTISKYLGSKYKVVASFGHIRDFPAKSGSVDPDKDFAMTYEIISKSEKY 61
Query: 411 L-KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ K I+VA + + LA+DPDREGEAIAWHI+E+L++ +A+ +N+ + R+VF+E+T+++
Sbjct: 62 VNKLIQVANKETQGIYLATDPDREGEAIAWHIIEVLKENNAIDDNVVINRMVFNEVTKSA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I +++ R I+ +LV A ARRALDYL+GF +SPLLWRKLPG +SAGRVQS AL LICD
Sbjct: 122 ILESIKRPRSINMDLVYAQQARRALDYLVGFTLSPLLWRKLPGSKSAGRVQSVALRLICD 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE +I++F QEYW +EA E F A L+ + K+L + I + +A+ +
Sbjct: 182 RESDIEKFITQEYWDIEAKCCNTEGK-----QFSAFLSCYAGKKLEKFDIKNEEDAQKLS 236
Query: 590 QKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ S ++ VI N ++ ++NP P+ITS+LQQ+A+ KL F+A TM +AQKLYEG+ +
Sbjct: 237 EEVRSRSYSVI-NVEKKHTKRNPYPPFITSSLQQEASTKLGFTAKNTMLIAQKLYEGIDV 295
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G GLITYMRTDG +I+DEA + IRS+I +G + PE RKY KKVKNAQEAHE
Sbjct: 296 -GGEIVGLITYMRTDGFYIADEALEHIRSIIVSMFGKEYLPESA-RKYVKKVKNAQEAHE 353
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT+I P LS L + LKLY LIW RT+A QM A + Q+ ++G+ D+ + R
Sbjct: 354 AIRPTNITITPGSLSNYLTPEQLKLYDLIWKRTVASQMNSAVIDQVIAELGSLDKVVTLR 413
Query: 769 SSCSRVEFLGFQAAY---EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
++ S + F GF Y ED D+ K N +L L+ D L EV
Sbjct: 414 ATGSSLFFDGFYKVYGHGEDDDS-----KNN----------MLPLLQKNDKCPLDEVVPH 458
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T PPARY+E SLVKK+EE+GIGRPSTYAS + VLQDR YV + + +P RGR+V+
Sbjct: 459 QHFTNPPARYNEASLVKKMEEIGIGRPSTYASIISVLQDRQYVILNQKRFFPTERGRIVN 518
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
FL ++FS +Y FTAD+E +LD +S G WK +L +W F + L +V
Sbjct: 519 VFLVNFFSRYVEYDFTADLEEKLDLISNGKINWKEVLHQFWFLFIDNVNSVKKLEFTEVL 578
Query: 946 KMLEKTFGDSLFASLPNK-DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
K++ + +F+S ++ R CPVC +GTL +S+ G F+GC+++P C Y
Sbjct: 579 KVISCEMENYIFSSDKSESSRVCPVCNDGTLELNISK--NGIFLGCSKYPECKYTKNVGS 636
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSH 1064
G D+ D N PK++G A+ +++ LK GPYG Y+Q+G D++G KRA++
Sbjct: 637 GIVDDTD------NTQYPKILGIDAATGQEIYLKKGPYGLYLQIGNDKSG---KRAAIPK 687
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
D + + L+ A ++L P++LG HP GQ I L L + G + + SV D
Sbjct: 688 NIDANLLDLQMAEKILSLPISLGTHPDTGQEIKLGLGKFGAYILYGGKYFSVKNEHNFLD 747
Query: 1125 VTLEKALEFLS 1135
+++E A+ ++
Sbjct: 748 ISIENAINIIA 758
>gi|329114376|ref|ZP_08243138.1| DNA topoisomerase 1 [Acetobacter pomorum DM001]
gi|326696452|gb|EGE48131.1| DNA topoisomerase 1 [Acetobacter pomorum DM001]
Length = 896
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/809 (44%), Positives = 497/809 (61%), Gaps = 33/809 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD Y VL S+GHVRDL + GSV PD+DF+M W+ +
Sbjct: 4 VVVVESPAKAKTINKYLGDGYTVLASFGHVRDLPPKDGSVLPDEDFTMKWQSDERGMKQV 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GA L LA+DPDREGEAI+WH+ ML+++ AL + + V RV F+EIT+++I+
Sbjct: 64 AAIAKALKGAHRLYLATDPDREGEAISWHVRAMLEERKAL-KGVDVQRVTFNEITKSAIR 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D L++AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 YAMEHPRDLDFPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKP+EYW+V A L + F A LTH K+L+Q + + A+ ++
Sbjct: 183 AEIEVFKPREYWSVIASLLTPAGAA-----FTARLTHLNGKKLDQFDLHNAELAEAAKKA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ + N V K+ +R VR+NP P + TSTLQQ+A+ KL SA TM+ AQ+LYEG+ L
Sbjct: 238 VEAENLAV-KSIERRKVRRNPQPPFTTSTLQQEASRKLGMSAQTTMRTAQQLYEGMDL-G 295
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA IR I ++ G+ + P + PR Y KVKNAQEAHEA+
Sbjct: 296 GETVGLITYMRTDGVTMAQEAINAIRQHIGQKIGTEYVPAK-PRIYTSKVKNAQEAHEAV 354
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ R P ++ L+ D +LY L+W R +A QM+ A++ Q+ VDI V R++
Sbjct: 355 RPTDVSRTPDSVARFLNNDQRRLYELVWKRAVASQMESASLDQVAVDIAGPSGQTVLRAN 414
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF Y + +++ E + +L S++ DPL +V+ +QH TQ
Sbjct: 415 GSIITFEGFLKLYRE-------GRDDTEKAADDDARMLPSMQEKDPLKREKVDAEQHFTQ 467
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKK+EELGIGRPSTYAS L VLQDR+YV +++R PE RGR+V+AFL
Sbjct: 468 PPPRYSEASLVKKMEELGIGRPSTYASILTVLQDRSYVRLENRRFIPEARGRLVTAFLVS 527
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F D FTA +E LD++S G +WK +L +W+ FS + + L I V L+K
Sbjct: 528 FFERYVDTGFTASLEELLDDISGGRAQWKQVLAAFWNDFSKAVSGTKELTITDVLNALDK 587
Query: 951 TFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
G F + R CP CG G L K+ R+GA FIGC+ +P C Y + +
Sbjct: 588 DLGPFFFPDRADGSDPRVCPSCGTGRLGLKLGRYGA--FIGCSNYPECQYTRRLTADSAE 645
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLPKRASVSH 1064
E D D +L+G +P + E + ++ GP+G YVQ G ED+ PKRAS+
Sbjct: 646 EGDDAALK---DGMRLLGQNPETGEDITVRQGPWGLYVQQGEPNPEDKKAK-PKRASLPK 701
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
+ +SITL+ AL LL P +G HP+ G+PI L R G V+ S+ K+
Sbjct: 702 NINGESITLDQALGLLSLPRLVGVHPETGEPIQAGLGRFGPFVKMGAVYGSLDKDDDVLT 761
Query: 1125 VTLEKALEFLSGK--DVRRCG-RPK-GKP 1149
+ L +A++ L+ K +R G PK G+P
Sbjct: 762 IGLNRAVDALAKKLASIRNLGVHPKDGEP 790
>gi|209964830|ref|YP_002297745.1| DNA topoisomerase I [Rhodospirillum centenum SW]
gi|209958296|gb|ACI98932.1| DNA topoisomerase I [Rhodospirillum centenum SW]
Length = 930
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/792 (44%), Positives = 484/792 (61%), Gaps = 41/792 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G +VV+VES KAK I YLG + VL SYGHVRDL R GSVRPD+DF M WE+ +
Sbjct: 3 GHNVVIVESPAKAKTINKYLGQDFTVLASYGHVRDLPPRDGSVRPDEDFEMDWELGDRSK 62
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ I A+ GA+ + LA+DPDREGEAIAWH+ E+L ++ L + + V R+ F+EIT++
Sbjct: 63 RHIDEIARAVRGADRVYLATDPDREGEAIAWHMKEVLGERRLLGK-VDVKRITFNEITKS 121
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+++ AL R+++ LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+C
Sbjct: 122 AVQTALAQPRDVNRELVDAYLARRALDYLVGFTLSPVLWRKLPGSKSAGRVQSVALRLVC 181
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI+ F+PQEYWT+EA +E + F A L+ KRL + ++G+ +A
Sbjct: 182 EREAEIEVFRPQEYWTIEADFRTQEGQT-----FTARLSQLDGKRLEKFTLGTQGDADAA 236
Query: 589 EQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+I F+V + +R VR+NP P+ TSTLQQ+A+ KL F AT TM+ AQ+LYEGV
Sbjct: 237 VARIRPMTFRVGR-IERKEVRRNPFPPFTTSTLQQEASRKLGFGATKTMRTAQRLYEGVD 295
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ G GLITYMRTDG+ +S EA R LI E +G + PE+ PR Y KNAQEAH
Sbjct: 296 I-GGETVGLITYMRTDGVALSQEAIDAARRLIDESWGRSYVPEK-PRIYKAAAKNAQEAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPTD+ R P ++ L++D L LY LIW RT+A QM A + Q+ VDI + VF
Sbjct: 354 EAIRPTDLFRRPEHVARYLEKDELALYELIWKRTLASQMASAVLDQVTVDIISKGAEAVF 413
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S + F GF Y++ A +++ L ++ GD L GE+ QH
Sbjct: 414 RATGSVIRFDGFLKVYQEDKDDADEDEDHRR---------LPPMRDGDDLARGEIRPNQH 464
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RYSE SLVKKLEELGIGRPSTYAS L+VLQDR YV ++ R PE RGR+V+AF
Sbjct: 465 FTQPPPRYSEASLVKKLEELGIGRPSTYASILQVLQDREYVRLEKRRFIPEDRGRLVTAF 524
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F +Y+FTAD+E +LD++S G +WK +L ++W +FS+ + L I QV
Sbjct: 525 LESFFPRYVEYTFTADLEGKLDDISGGRIDWKQVLREFWRQFSAAVEDTRDLTITQVLTA 584
Query: 948 LEKTFGDSLFASLPNKD------RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK 1001
L++ G F D R CP CG G L K+ + +G FIGC+ +P C Y
Sbjct: 585 LDELLGPHFFPRRLGPDGQEVDARVCPTCGTGRLSLKLGK--SGGFIGCSNYPECRYTRP 642
Query: 1002 -TLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKR 1059
++ G+ E ++ R ++G+ P + V +K+G +G YVQLG D PKR
Sbjct: 643 LSVAGEGGEAESGDR--------MLGNDPETSLPVWVKTGRFGAYVQLGNGDGKEEKPKR 694
Query: 1060 ASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKN 1119
AS+ ++ L+ AL LL P +LG HP+ G I+ + R G ++H + KN
Sbjct: 695 ASLPRGMLPATMDLDTALRLLALPRSLGTHPESGLEIVAGIGRYGPYLKH----GASYKN 750
Query: 1120 MKPNDVTLEKAL 1131
+ D L L
Sbjct: 751 LTAEDDVLTIGL 762
>gi|404317928|ref|ZP_10965861.1| DNA topoisomerase I subunit omega [Ochrobactrum anthropi CTS-325]
Length = 885
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/803 (44%), Positives = 488/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 2 NVVVVESPAKAKTINKYLGSNYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSSKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ +ILA+DPDREGEAI+WH++E+L Q+ AL + TV RV F+ IT+ ++
Sbjct: 62 LADIVKALKDSDGIILATDPDREGEAISWHVLEVLNQKKAL-KGKTVKRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ DR
Sbjct: 121 LDAIANPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVADR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 181 ESEIERFIREEYWNIAALLKTPRNDS-----FTARLTAVDGKKLGKLDIKNGEQATAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A+F+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLEGASFKALSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAINAARDAIGKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVFR 768
RPTD R P + LD+D +LY LIW R +A QMQ A + + VDI N+ S + R
Sbjct: 354 RPTDFSRHPKDVRRYLDDDQARLYELIWKRAIASQMQAADIERTTVDIEAVNSSRSAMLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTKFDGFLAAYMD---------HREEEDDDEDSAKLPEIRSGEALARAKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KK+EELGIGRPSTYA+TL L+DR Y+T+ R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEASLIKKMEELGIGRPSTYAATLATLRDREYITIDKRKLIPEPKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKDVLRDFWRDFSGNVDDIKELRVTNVLDAL 584
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG G L K+ ++GA F+GC+ +P C Y + L GD
Sbjct: 585 NEELAPLVFPAREDGSDPRSCPTCGTGMLSLKLGKYGA--FVGCSNYPECKYT-RQLGGD 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E + DEPK +G P + E++ ++G +G YVQ GE G KRAS+
Sbjct: 642 ANGE-----SAAADEPKSLGKDPFTGEEITARTGRFGPYVQRGE---GKEAKRASLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
VD++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TVDTLDHEKAVALLSLPRDIGQHPETGKMISAGIGRYGPYVSHDGTFANLENAEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|91977501|ref|YP_570160.1| DNA topoisomerase I [Rhodopseudomonas palustris BisB5]
gi|91683957|gb|ABE40259.1| DNA topoisomerase I [Rhodopseudomonas palustris BisB5]
Length = 914
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/814 (43%), Positives = 496/814 (60%), Gaps = 47/814 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL S+GHVRDL A++GSV PD +F M+WE+ A
Sbjct: 2 NLVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDANFQMIWEIDPKAAGR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL GA+ LILA+DPDREGEAI+WH++E+L+Q+ AL + V RVVF+ IT+ S+
Sbjct: 62 LNDIAKALKGADKLILATDPDREGEAISWHVLEVLKQKRALKDQ-KVERVVFNAITKQSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ REID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 TDAMKHPREIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
EMEI++F P+EYW++ A L SF A L K++ +L IG+ EA+D +Q
Sbjct: 181 EMEIEKFVPREYWSLIATLTTPRGD-----SFEARLVGADGKKIQRLDIGTGVEAEDFKQ 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I ANF+V + + R+NP P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEG+ +
Sbjct: 236 AIEQANFKV-SSVEAKPARRNPYAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ I A E R +I E YGS + P+ PR+Y K KNAQEAHEA
Sbjct: 294 GGETTGLITYMRTDGVQIDPSAITEARKVIAEDYGSAYVPDT-PRQYQAKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV--F 767
IRPTD+ R PA ++G LD D +LY LIW RT+A QM+ A + + VDI S V
Sbjct: 353 IRPTDMSRRPADVNGRLDSDQARLYELIWVRTVASQMESAEMERTTVDIEAKAGSRVLEL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ V+F GF AAY++ +++ E L ++ + L + + QH
Sbjct: 413 RATGQVVKFDGFLAAYQE---------GRDDDSEDEDSRRLPAMSEDEALKRDALAVTQH 463
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP R+SE SLVK++EELGIGRPSTYAS L+VL+DR YV ++ + L+ E +GR+V AF
Sbjct: 464 FTEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVKLEKKRLHGEDKGRVVIAF 523
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F+ +Y FTA +E +LD +S W+ +L D+W+ F + L + QV +
Sbjct: 524 LESFFARYVEYDFTAALEEKLDRISNNEISWQQVLRDFWTDFIGAVDDIKELRVAQVLDV 583
Query: 948 LEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
L++ G ++A P +D R CP CG G L K +FGA F+GC+ +P C +
Sbjct: 584 LDEMLGPHIYA--PREDGGDPRQCPSCGTGRLNLKAGKFGA--FVGCSNYPECRHT---- 635
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRA 1060
D +++G P + +V +KSG +G Y+QLGE + G PKRA
Sbjct: 636 ------RPLAADGGGGDADRVLGIDPDTGFEVAVKSGRFGPYIQLGEAKDYAEGEKPKRA 689
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
+ + LE AL LL P +G HP+ G+PI + R G V+H +T AS+
Sbjct: 690 GIPKGTSPSDVELEMALRLLALPREVGKHPETGEPIKAGIGRFGPYVQHEKTYASLEAGD 749
Query: 1121 KPNDVTLEKALEFLS-----GKDVRRCGRPKGKP 1149
+++ L +A+ ++ G RR G GKP
Sbjct: 750 DVHNIGLNRAVTLIAEKIAKGPSKRRFGADPGKP 783
>gi|406990153|gb|EKE09833.1| hypothetical protein ACD_16C00101G0007 [uncultured bacterium]
Length = 785
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/795 (44%), Positives = 489/795 (61%), Gaps = 35/795 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES +KA+ I+ YLG Y+VL SYGHVRDL ++ GSV+PD+DF+M W+V + H
Sbjct: 2 NVVVVESPSKARTIEKYLGKNYKVLASYGHVRDLVSKEGSVKPDEDFAMTWQVDERSKKH 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +I AL GA +L LA+DPDREGEAI+WHI E+L Q+ AL ++I R+ F+ IT+ ++
Sbjct: 62 IDAITKALKGAGHLYLATDPDREGEAISWHIQEILAQKGAL-KDIKPERIAFNAITKETV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
AL R ID LV+AYLAR +LDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+ +R
Sbjct: 121 ANALAHPRPIDRQLVEAYLARLSLDYLVGFNLSPVLWRKLPGSRSAGRVQSVALRLVVER 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ FK QEYWT+E E + D F A LTH K+L++ S+ S +A+D E+
Sbjct: 181 ENEIETFKSQEYWTIEV-----EFLTEDQKPFKARLTHLDGKKLDKFSLASEKDARDAEK 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
KI + +F + K+ + R P+ITSTLQQ+A+ KL FS TM+LAQKLYEGV +
Sbjct: 236 KIRAQDFHIDAIEKKRLQRHPRPPFITSTLQQEASRKLGFSPRRTMQLAQKLYEGVSI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD + A R++I + +G + P PR+Y KVKNAQEAHEAI
Sbjct: 295 SEIVGLITYMRTDSTQVEGSAIAACRNVIEKVFGKKYLPP-SPRQYKTKVKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD RR P ++ LD D KLY LIW R MA QM A + Q VD+ + + I+ R++
Sbjct: 354 RPTDSRRNPQEMTKFLDHDHAKLYELIWKRMMASQMASAELDQTSVDVVDQKKEIILRAT 413
Query: 771 CSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S + F GF Y E +DA + E+E+N IL L+ + + +QH T
Sbjct: 414 GSVLVFDGFLTLYRESLDADQM---EDEDN------KILPPLREKETAKKQNILPEQHFT 464
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E SLVKK+EELGIGRPSTYA L+VLQ+R YV + R L PE RGR+V+AFL
Sbjct: 465 QPPPRYTEASLVKKMEELGIGRPSTYARILQVLQERGYVKNEKRTLIPEDRGRIVTAFLL 524
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+YF +Y FTA +E +LD +S G WK +L+ +W F AQ L I +V + L+
Sbjct: 525 NYFRTYVEYDFTAQLEEQLDEISNGDLFWKDVLIKFWKPFHGAIDEAQKLKIQEVLEQLQ 584
Query: 950 KTFGDSLFASLPNK--DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG-- 1005
K D LF L + CP C +G L ++S+FG+ FIGC+++P C Y +
Sbjct: 585 KDLDDFLFPPLEGQADPHLCPRCKKGMLGLRLSKFGS--FIGCSEYPECKYTRPLIVSEE 642
Query: 1006 --DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGY-LPKRASV 1062
D +E+ +R +D P+S V +K GPYGFY+Q GE + PKRAS+
Sbjct: 643 GIDQVQEEPYERELGID--------PSSGLTVKVKRGPYGFYIQWGEVISKKEKPKRASL 694
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+ + D ITL++AL L P ++G P+ +PI + R G V+ + AS+ K
Sbjct: 695 TAGMNPDEITLKEALSLGALPRSVGFDPETKEPITAAVGRFGPYVKLGKIFASLKKTDDV 754
Query: 1123 NDVTLEKALEFLSGK 1137
+ L +AL+ + K
Sbjct: 755 LTIDLTRALQLIEIK 769
>gi|239833970|ref|ZP_04682298.1| DNA topoisomerase I [Ochrobactrum intermedium LMG 3301]
gi|444310021|ref|ZP_21145649.1| DNA topoisomerase I subunit omega [Ochrobactrum intermedium M86]
gi|239822033|gb|EEQ93602.1| DNA topoisomerase I [Ochrobactrum intermedium LMG 3301]
gi|443486668|gb|ELT49442.1| DNA topoisomerase I subunit omega [Ochrobactrum intermedium M86]
Length = 885
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/803 (44%), Positives = 486/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 2 NVVVVESPAKAKTINKYLGSNYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSSKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ +ILA+DPDREGEAI+WH++E+L Q+ AL + TV RV F+ IT+ ++
Sbjct: 62 LADIVKALKDSDGIILATDPDREGEAISWHVLEVLNQKKAL-KGKTVKRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ DR
Sbjct: 121 LDAIANPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVADR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + S F A LT K+L +L I + +A I
Sbjct: 181 ESEIERFIREEYWNIAALLKTPRNDS-----FTARLTAVDGKKLGKLDIKNGEQATAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A+F+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLEGASFKALSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDV-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ ++ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQMAPEAINAARDAIGKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVFR 768
RPTD R P + LD+D +LY LIW R +A QMQ A + + VDI N S + R
Sbjct: 354 RPTDFSRHPKDVRRYLDDDQARLYELIWKRAIASQMQAADIERTTVDIEAVNGSRSALLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTRFDGFLAAYMD---------HREEEDDEEDSAKLPEIRSGEALAREKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KK+EELGIGRPSTYA+TL L+DR Y+T+ R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEASLIKKMEELGIGRPSTYAATLATLRDREYITIDKRKLIPEPKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKDVLRDFWRDFSGSVDDIKELRVTNVLDAL 584
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG GTL K+ ++GA F+GC+ +P C Y + L GD
Sbjct: 585 NEELAPLVFPAREDGSDPRSCPTCGTGTLSLKLGKYGA--FVGCSNYPECKYT-RQLGGD 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E DEPK +G P + E++ ++G +G YVQ GE G KRAS+
Sbjct: 642 ANGE-----AAAADEPKSLGKDPFTGEEITARTGRFGPYVQRGE---GKEAKRASLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
VD++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TVDALDHEKAVALLSLPRDIGQHPETGKMISAGIGRYGPYVSHDGTFANLENAEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|451940645|ref|YP_007461283.1| DNA topoisomerase I [Bartonella australis Aust/NH1]
gi|451900032|gb|AGF74495.1| DNA topoisomerase I [Bartonella australis Aust/NH1]
Length = 846
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/800 (43%), Positives = 497/800 (62%), Gaps = 31/800 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG Y+V+ S+GHVRDL+A+ GSV PD+DFSM W++ +A+ L
Sbjct: 3 IVIVESPAKAKTINKYLGPQYKVVASFGHVRDLSAKDGSVLPDEDFSMKWDIGAASAKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L + + RVVF+ IT+ S+
Sbjct: 63 NEIAKAVKEADSLILATDPDREGEAISWHILDVLKQKKILKDK-PIKRVVFNAITKKSVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDRE
Sbjct: 122 DAMSNPRNIDESLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F ++YW++E L + S F A L K+L++L I S +A I
Sbjct: 182 SEIERFIKEDYWSIETFLKTPRNDS-----FHARLLALNHKKLDKLDIQSQEQADKICLM 236
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +A ++ + N + +++NP+P + TSTLQQ A++KL FSA+ TM+LAQKLYEG+++ +
Sbjct: 237 LENAVYRTL-NVEAKPIKRNPSPPFTTSTLQQAASSKLGFSASRTMQLAQKLYEGIEI-N 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ ++ EA R +I + +G ++ PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GEVAGLITYMRTDGVQMASEAIHSAREVIIDSFGGNYLPEK-PRFYSTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVFR 768
RPTD +R P + LD D KLY LIW R +A QM+ A + + V+I ++S R
Sbjct: 354 RPTDFKRTPDQVRNFLDSDQAKLYELIWKRAIASQMRSAEIERTTVEIEALQGEDSANLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S + F GF +AY D +++EEN L + + L ++E QH
Sbjct: 414 ATGSIIRFDGFISAYTD--------QQDEENGEKNESTRLPEINIDETLTKEKIESIQHT 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KKLEELGIGRPSTYASTL L DR Y+ V R L P+ +GR+V+AFL
Sbjct: 466 TEPPPRYSEASLIKKLEELGIGRPSTYASTLATLSDRGYIMVDKRKLIPDVKGRIVTAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F+ +Y FTA++E +LD +S G WK +L D+WS F++ T Q L I + +L
Sbjct: 526 ENFFNRYVEYGFTANLEEKLDLISDGKLSWKDVLRDFWSGFNASITNIQELRITDILDVL 585
Query: 949 EKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
T F + + RSCP+C G L K+ R+GA F+GC+ +P C Y K L D
Sbjct: 586 NVTLAPLAFPAREDGGDSRSCPLCANGRLSLKLGRYGA--FVGCSNYPECKYTHK-LGSD 642
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+E+D N +EP L+G P + V L++G +G Y+QLGE + KRA +
Sbjct: 643 TEEKDEAVYN---NEPTLLGIDPETGGNVSLRNGRFGPYIQLGESKEA---KRAGLPKEW 696
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+++I L+ AL LL P +G HP+ G+ I R G + H A++P + D+
Sbjct: 697 KINNIDLDKALALLSLPREVGVHPETGKIITAATGRYGPYLAHDGKYATLPNIDEVFDIG 756
Query: 1127 LEKALEFLSGKDVRRCGRPK 1146
+ +A+ L+ K R K
Sbjct: 757 INRAVTVLAEKQKNETKRDK 776
>gi|357033048|ref|ZP_09094980.1| DNA topoisomerase I [Gluconobacter morbifer G707]
gi|356413408|gb|EHH67063.1| DNA topoisomerase I [Gluconobacter morbifer G707]
Length = 896
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/794 (44%), Positives = 482/794 (60%), Gaps = 35/794 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL S+GHVRDL + GSVRPD++F+MVW+ +
Sbjct: 4 VVVVESPAKAKTINKYLGSGYTVLASFGHVRDLPPKDGSVRPDENFAMVWQTDERGARQM 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GA+NL LA+DPDREGEAI+WH+ +L+++ L +NI V RV F+EIT+++++
Sbjct: 64 SAIAKALKGAKNLYLATDPDREGEAISWHVRSVLEEKKLL-KNIDVHRVTFNEITKSAVQ 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R +D L+ AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 TAMAEPRNLDRPLIDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+P+EYWTV A + + F A LTH +L+Q + S A
Sbjct: 183 AEIEVFRPREYWTVAAGFTTPGNAA-----FQARLTHLDGNKLDQFDLNSEELAFAARDT 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + F V ++ + R P P+ TSTLQQ+A+ KL SA TM+ AQ+LYEGV L G
Sbjct: 238 VRAGQFTVRSVERKRVKRNPPPPFTTSTLQQEASRKLGMSAQTTMRTAQQLYEGVDL-GG 296
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA IR I + +G + P+ PR Y K KNAQEAHEAIR
Sbjct: 297 ETIGLITYMRTDGVTMAKEAVGAIRGHIGKAFGDDYVPDY-PRTYSTKAKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ R P + L + KLY LIW R++A QMQ A + Q+ V + +A I+ R++
Sbjct: 356 PTDVFRTPQKVGHALSPEQKKLYELIWKRSVASQMQSAELDQVAVTLADASGRILLRATG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y + G + ++E+ R +L +K GD L GEVE +QH TQP
Sbjct: 416 STIAFDGFLKLYIE---GRDDSRSDDEDGR-----LLPPMKEGDRLTTGEVEAEQHFTQP 467
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKK+EE+GIGRPSTYAS L VL+DRNYV +++R PE RGR+V+AFL+ +
Sbjct: 468 PPRYSEASLVKKMEEIGIGRPSTYASILSVLRDRNYVRLEARRFIPEDRGRLVTAFLTSF 527
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F D FTA +E +LD++S G +W ++ +W FS+ + L I V L++
Sbjct: 528 FERYVDSGFTASLEEQLDDISGGRADWHDVMAAFWQDFSAAVAQTKDLKISDVIDALDED 587
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
G F P D R C CG G L ++ +FGA FIGC+ +P C + + +
Sbjct: 588 LGPHFFP--PRSDGSDPRQCTACGTGRLGLRLGKFGA--FIGCSNYPTCQFTRRLVA--- 640
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLPKRASVS 1063
+E DT N D PK++G P + E + ++ GPYG Y+Q G ED+ PKR ++
Sbjct: 641 EEGDTEGLN---DGPKVLGQDPETGEDITIRRGPYGLYIQKGEPNPEDKKAK-PKRTTIP 696
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
D +S+TLE AL LL P +G HP+ G+ I L R G V+ ++ K+
Sbjct: 697 KGVDGNSLTLEQALGLLSLPRVVGIHPETGEKIEAGLGRFGPYVKMGAIYGTLDKDDDVL 756
Query: 1124 DVTLEKALEFLSGK 1137
V L +A++ L+ K
Sbjct: 757 TVGLNRAVDSLAKK 770
>gi|153010992|ref|YP_001372206.1| DNA topoisomerase I [Ochrobactrum anthropi ATCC 49188]
gi|151562880|gb|ABS16377.1| DNA topoisomerase I [Ochrobactrum anthropi ATCC 49188]
Length = 885
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/803 (44%), Positives = 487/803 (60%), Gaps = 32/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M WEV S +
Sbjct: 2 NVVVVESPAKAKTINKYLGSNYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSSKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ +ILA+DPDREGEAI+WH++E+L Q+ AL + TV RV F+ IT+ ++
Sbjct: 62 LADIVKALKDSDGIILATDPDREGEAISWHVLEVLNQKKAL-KGKTVKRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ DR
Sbjct: 121 LDAIANPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVADR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + F A LT K+L +L I + +A I
Sbjct: 181 ESEIERFIREEYWNIAALLKTPRNDG-----FTARLTAVDGKKLGKLDIKNGEQATAIRT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A+F+ + + R P+ TSTLQQ A+ +L FSA+ TM++AQ+LYEGV +
Sbjct: 236 MLEGASFKALSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAINAARDAIGKSFGAKYVPEK-PRYYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVFR 768
RPTD R P + LD+D +LY LIW R +A QMQ A + + VDI N+ S + R
Sbjct: 354 RPTDFSRHPKDVRRYLDDDQARLYELIWKRAIASQMQAADIERTTVDIEAVNSSRSAMLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S +F GF AAY D EE D E A L +++G+ L +++ QH
Sbjct: 414 ANGSVTKFDGFLAAYMD---------HREEEDDDEDSAKLPEIRSGEALAREKIDATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KK+EELGIGRPSTYA+TL L+DR Y+T+ R L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEASLIKKMEELGIGRPSTYAATLATLRDREYITIDKRKLIPEPKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G WK +L D+W FS + L + V L
Sbjct: 525 ESFFERYVEYDFTADLEEKLDLISDGKLSWKDVLRDFWRDFSGNVDDIKELRVTNVLDAL 584
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + RSCP CG G L K+ ++GA F+GC+ +P C Y + L GD
Sbjct: 585 NEELAPLVFPAREDGSDPRSCPTCGTGMLSLKLGKYGA--FVGCSNYPECKYT-RQLGGD 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E + DEPK +G P + E++ ++G +G YVQ GE G KRAS+
Sbjct: 642 ANGE-----SAAADEPKSLGKDPFTGEEITARTGRFGPYVQRGE---GKEAKRASLPKGW 693
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
VD++ E A+ LL P ++G HP+ G+ I + R G V H T A++ + V
Sbjct: 694 TVDTLDHEKAVALLSLPRDIGQHPETGKMISAGIGRYGPYVSHDGTFANLENAEEVFSVG 753
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + GR + P
Sbjct: 754 LNRAVSVLADKQSKGGGRGRSTP 776
>gi|83594532|ref|YP_428284.1| DNA topoisomerase I [Rhodospirillum rubrum ATCC 11170]
gi|386351290|ref|YP_006049538.1| DNA topoisomerase I subunit omega [Rhodospirillum rubrum F11]
gi|83577446|gb|ABC23997.1| DNA topoisomerase [Rhodospirillum rubrum ATCC 11170]
gi|346719726|gb|AEO49741.1| DNA topoisomerase I subunit omega [Rhodospirillum rubrum F11]
Length = 915
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/794 (43%), Positives = 486/794 (61%), Gaps = 26/794 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGH+RDL + GSVRPD+ F+M WE+ + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGKDYVVLASYGHIRDLPPKDGSVRPDEGFAMDWEIDAKSEKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K I AL A+ L+LA+DPDREGEAI+WH+ ++L+++ AL V R+ F+ IT ++++
Sbjct: 63 KDITQALKSADGLLLATDPDREGEAISWHVRDVLEKRKALVGK-QVQRITFNAITRSAVE 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
AL+ R++D LV+AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 122 EALRNPRDLDTPLVEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
E++ F +EYWTV+A+L + F A L+ ++L++ + T A ++
Sbjct: 182 QEVERFVSREYWTVDAILASPQGQI-----FRARLSQLDGQKLDKFGLPDETTALAALER 236
Query: 592 INSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I +A +V ++ +R R+NP P+ TST+QQ+A+ KL FSA TM++AQKLYEGV L
Sbjct: 237 IKAATLRV-ESVERKQARRNPAAPFTTSTIQQEASRKLYFSARQTMQVAQKLYEGVDL-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I+ EA R LI +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETVGLITYMRTDGVSIAPEAVFATRDLIGAEFGAAYLPEQ-PRVYKTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ R P ++ L + KLY L+W RT+A QM A + Q+ VDI + + +V ++
Sbjct: 354 RPTDVARTPQSVAPYLTAEQRKLYELVWKRTVASQMASAILDQVAVDIADPEAKVVLHAT 413
Query: 771 CSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S ++F GF Y ED D R + + + + +L L+ GD + +V+ QH T
Sbjct: 414 GSVIQFDGFLKVYREDFDD---RPESSPDGAGEDENRLLPPLREGDGVKREDVKADQHFT 470
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E SLVK++EELGIGRPSTYAS L VLQDR YV + +R PE RGR+V+AFL
Sbjct: 471 QPPPRYTEASLVKRMEELGIGRPSTYASILSVLQDREYVRLDARRFIPEDRGRLVTAFLE 530
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
++FS YSFTAD+E +LD +S G WK +L +W F + +L + +V L+
Sbjct: 531 NFFSRYVQYSFTADLENQLDEISDGKLGWKTVLERFWMDFKAAIEGTATLRVSEVLDALD 590
Query: 950 KTFGDSLF--ASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
K G LF A + R CPVC G L ++ +FGA F+GC+ +P C + + +
Sbjct: 591 KELGPHLFPQAEDGHDPRVCPVCSAGRLGLRIGKFGA--FVGCSNYPDCKFTRPLVTKEG 648
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE------DRTGYLPKRAS 1061
+ D + +P +G P S E V L+ GPYG YVQ GE + P R S
Sbjct: 649 EGGDGAALAEDGTKP--LGKDPVSGEDVTLRKGPYGLYVQKGEAAPVEKGKKAVKPPRVS 706
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ D +I L+ AL+LL P +G+HP+ G I + R G ++H S+PK+
Sbjct: 707 IPKDMDAATIDLDIALKLLSLPRPVGDHPETGTMISAGIGRFGPYIKHGDIYKSLPKDDD 766
Query: 1122 PNDVTLEKALEFLS 1135
+ L +A+ L+
Sbjct: 767 VLTIGLNRAVSLLA 780
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
P+ +G HP + + G +G Y++ G D LPK DV +I L A+ LL
Sbjct: 728 PRPVGDHPETGTMISAGIGRFGPYIKHG-DIYKSLPKD------DDVLTIGLNRAVSLLA 780
Query: 1081 --------RYPV-NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKAL 1131
R P +LG+HP D +P+ + R G V+H A++P+ P TL +A+
Sbjct: 781 EAGKGGRARQPARSLGDHPADTKPVTIHDGRFGPYVQHGGVRATIPRTADPATYTLAEAV 840
Query: 1132 EFLSGK 1137
E ++ K
Sbjct: 841 ELIAAK 846
>gi|298291503|ref|YP_003693442.1| DNA topoisomerase I [Starkeya novella DSM 506]
gi|296928014|gb|ADH88823.1| DNA topoisomerase I [Starkeya novella DSM 506]
Length = 879
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/794 (43%), Positives = 488/794 (61%), Gaps = 35/794 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VV+VES KAK I YLG YEV+ SYGHVRDL A+ GSV P+ DF M+W++ A L
Sbjct: 3 VVIVESPAKAKTINKYLGPGYEVIASYGHVRDLPAKDGSVDPEHDFHMLWDIDPKAQKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ GA+ LILA+DPDREGEAI+WH++E+L+++ AL + ++RVVF+ IT+ ++
Sbjct: 63 SDIARAVKGADGLILATDPDREGEAISWHVLEILKEKRALKDQ-PISRVVFNAITKQAVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R IDA LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDRE
Sbjct: 122 DAMAHPRTIDAALVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F +EYW++ A L + + F A L K++ +L +G+ EA D +
Sbjct: 182 REIETFVKREYWSIAATLATPRNET-----FEARLVGADGKKITRLDVGTEAEATDFRKA 236
Query: 592 INSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SA+F+V ++ + R++P P+ TSTLQQ+A+ KL + TM++AQ+LYEGV +
Sbjct: 237 LESADFKV-RSVEAKPARRHPYPPFTTSTLQQEASRKLGLAPAVTMRIAQRLYEGVDV-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA + RS+I YG + P PRKY K KNAQEAHEA+
Sbjct: 295 GETVGLITYMRTDGVDMAPEAVAQARSVIGRDYGDRYVPN-APRKYTAKAKNAQEAHEAV 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFR 768
RPTD+ R P +S L+ + KLY LIW RT+A QM+ A + + VDI A ++ R
Sbjct: 354 RPTDLSRRPKDVSRHLEPEQAKLYELIWLRTVASQMESAELERTTVDIDAKAAGRALELR 413
Query: 769 SSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ V+F GF Y E +D G E+EEN R L ++ TG+ L ++ QH
Sbjct: 414 ATGQVVKFDGFLTLYREGIDDG----DEDEENRR------LPAMSTGEALANKGIKADQH 463
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SLVK++EELGIGRPSTYAS L VL+DR YV + R L PE +GR+V+AF
Sbjct: 464 FTEPPPRYSEASLVKRMEELGIGRPSTYASVLAVLRDREYVKLDKRRLVPEDKGRLVTAF 523
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F +Y FTAD+E +LD +S G WK +L D+W F++ + L + V
Sbjct: 524 LESFFDRYVEYDFTADLEEKLDLISNGELAWKDVLRDFWRDFTAAVGETKELRVSDVISA 583
Query: 948 LEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
L++ +F P +D R CP CG G L KV +FGA FIGC+ +P C Y
Sbjct: 584 LDEMLTAHIFP--PKEDGSDPRICPTCGTGRLSLKVGKFGA--FIGCSNYPECKYTRPLA 639
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
+ D ++ + N +++G P S +V ++ G +G Y+QLGE + G PKR+S+
Sbjct: 640 VQNGDSDNPAEANGT----RVLGTDPVSGLEVTVRDGRFGAYLQLGEAKDGEKPKRSSLP 695
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
+ LE L LL P +G HP +G+PI+ + R G V+H RT A++
Sbjct: 696 KGLAPADVDLETGLALLSLPREIGVHPDNGEPILAGIGRFGPYVQHGRTYANLEAGDDVL 755
Query: 1124 DVTLEKALEFLSGK 1137
+ L +A+ ++ K
Sbjct: 756 SIGLNRAVALIADK 769
>gi|188582748|ref|YP_001926193.1| DNA topoisomerase I [Methylobacterium populi BJ001]
gi|179346246|gb|ACB81658.1| DNA topoisomerase I [Methylobacterium populi BJ001]
Length = 909
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/809 (42%), Positives = 487/809 (60%), Gaps = 29/809 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG YEVL S+GH+RDL A+ GSV P+ DF+MVWE+ +
Sbjct: 3 VVVVESPAKAKTINKYLGRDYEVLASFGHIRDLPAKDGSVDPEADFAMVWELEDRGSKRV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ GAE LILA+DPDREGEAI+WH++E L + AL + I V RV F+ IT+AS+
Sbjct: 63 SEIARAIKGAEKLILATDPDREGEAISWHVIEALSARKAL-KGIPVERVTFNAITKASVD 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ REID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+ +RE
Sbjct: 122 AAMRKPREIDQALVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVVERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ FKP+EYW++ A L + F A L KR+ +L +G+ EA ++
Sbjct: 182 MEIERFKPREYWSIVATLATEAGGV-----FEARLVGADGKRIQRLDVGNAEEAAAFKRD 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A FQV + R P+ TSTLQQ+A+ KL + TM++AQKLYEGV + G
Sbjct: 237 LELATFQVASVEAKPAKRHPQPPFTTSTLQQEASRKLGMAPAQTMRVAQKLYEGVDV-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G+ITYMRTDG+ ++ EA + R +I +G + P PRKY K KNAQEAHEA+R
Sbjct: 296 ETVGIITYMRTDGVDMAPEAISDARRVIGREFGDDYVPG-APRKYSVKAKNAQEAHEAVR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNA--DESIVFRS 769
PTD+ RLP ++ L+ + KLY LIW+RT+A QM+ A + + V++ + I R+
Sbjct: 355 PTDMGRLPKQVARYLEPEQAKLYELIWTRTIASQMESAELERTTVEVTASVGPRRIDLRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ V+F GF A Y+ E ++++ E L ++ GDPL + QH T
Sbjct: 415 TGQVVKFDGFLALYQ----------EGKDDEEDEDSKRLPAMAAGDPLKRERIASTQHFT 464
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE SLVK++EELGIGRPSTYA+ L+ L+DR YV ++ + L PE +GR+V+ FL
Sbjct: 465 EPPPRYSEASLVKRMEELGIGRPSTYAAVLQTLRDREYVKIEKKRLQPEDKGRLVTGFLE 524
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F +Y FTA +E +LD VS +W+ +L D+W FS+ + L + +V + L
Sbjct: 525 SFFKRYVEYDFTASLEEQLDRVSNAEIDWRSVLRDFWRDFSAAIGGTKELRVAEVLEALN 584
Query: 950 KTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK-TLYGD 1006
G +F + R+CP CG G L K+ +FGA FIGC+ +P C Y + + G
Sbjct: 585 GLLGPHIFPEKADGGDPRACPTCGSGQLSLKLGKFGA--FIGCSNYPECKYTRQLSASGV 642
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE---DRTGYLPKRASVS 1063
+ E D +++G PA+ V L+ G +G +VQLGE ++ PKR+S+
Sbjct: 643 EGEGDGSSAEGGQPGVRVLGDDPATGLPVTLRDGRFGPFVQLGEASSEKGAEKPKRSSLP 702
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
S+TLE AL LL P + HP+ G+PI+ L R G V+H +T A++ K+
Sbjct: 703 KGTSPGSVTLEIALRLLSLPREVAKHPETGEPILANLGRFGPYVQHGKTYANLGKDDDVL 762
Query: 1124 DVTLEKALEFLSGKDVRRC-GRPKGKPKR 1151
++ +A++ + K+ GRP P R
Sbjct: 763 EIGANRAIDLIVAKEQGGGRGRPSSDPGR 791
Score = 46.6 bits (109), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 25/150 (16%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ + HP + E +L G +G YVQ G+ A++ DV I A++L+
Sbjct: 722 PREVAKHPETGEPILANLGRFGPYVQHGK-------TYANLGKDDDVLEIGANRAIDLIV 774
Query: 1082 YPVN--------------LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
LG HP DG ++++ + G V A++PK M +TL
Sbjct: 775 AKEQGGGRGRPSSDPGRALGPHP-DGAALVVKAGKYGPYVSDGSVNATLPKTMAAESLTL 833
Query: 1128 EKALEFLSGKDVRRCGRPKGKPKREEALEA 1157
E+A+E ++ K G+ KP R+ A A
Sbjct: 834 EQAIELINAKRASGGGK---KPVRKTATRA 860
>gi|73666949|ref|YP_302965.1| DNA topoisomerase I [Ehrlichia canis str. Jake]
gi|72394090|gb|AAZ68367.1| DNA topoisomerase I [Ehrlichia canis str. Jake]
Length = 820
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/801 (42%), Positives = 496/801 (61%), Gaps = 36/801 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+++VES +KAK I YLG Y+V+ S+GH+RD A+SGSV PD DF+M +E+ S + +
Sbjct: 2 SLIIVESPSKAKTIGKYLGSKYKVVASFGHIRDFPAKSGSVNPDKDFAMTYEIISKSEKY 61
Query: 411 L-KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ K I+VA + LA+DPDREGEAIAWHIVE+L++ +A+ +N+ + R+VF+E+T+ +
Sbjct: 62 VNKLIQVASKETHGIYLATDPDREGEAIAWHIVEVLKENNAIDDNVVINRMVFNEVTKNA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I +++ R I+ +LV A ARRALDYL+GF +SPLLWRKLPG +SAGRVQS AL LICD
Sbjct: 122 ILESIKHPRSINMDLVYAQQARRALDYLVGFTLSPLLWRKLPGSKSAGRVQSVALRLICD 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE +I++F QEYW +EA + +++ F A L+++ K+L + I + +AK +
Sbjct: 182 RESDIEKFVTQEYWDIEA-----KCQNVEGKQFSAFLSYYAGKKLEKFDIKNEEDAKRLA 236
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+++ S N+ V+K K+ R P+ITS+LQQ+A+ KL F+A TM +AQKLYEG+ +
Sbjct: 237 EEVKSRNYSVVKVEKKHTKRNPYPPFITSSLQQEASTKLGFTAKNTMLIAQKLYEGIDV- 295
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG +I+DEA IRS+I +G + P RKY KKVKNAQEAHEA
Sbjct: 296 GGEIVGLITYMRTDGFYIADEALDHIRSIIVSIFGKEYLPASA-RKYVKKVKNAQEAHEA 354
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT+I P LS L + LKLY LIW RT+A QM A + Q+ V++ ++D+ + R+
Sbjct: 355 IRPTNITITPDSLSNYLTPEQLKLYDLIWKRTVASQMNSAIIDQVVVELASSDKVVTLRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S + F GF Y NE++D +L L+ D L EV QH T
Sbjct: 415 TGSSLFFDGFYKV----------YGHNEDDDNKN--NMLPLLQVSDECPLNEVIPHQHFT 462
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
PPARY+E SLVKK+EE+GIGRPSTYAS + VLQDR YV + + +P RGR+V+ FL
Sbjct: 463 IPPARYNEASLVKKMEEIGIGRPSTYASIISVLQDRQYVILNQKKFFPTERGRIVNIFLV 522
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
++FS +Y FTAD+E ELD +S G WK +L +W F + L ++ K++
Sbjct: 523 NFFSRYVEYDFTADLEEELDLISNGKINWKKVLHKFWFLFIDNVNSVKKLEFTEILKVIS 582
Query: 950 KTFGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD-- 1006
+ +F+S ++ R CP C +GTL +S+ G F+GC+ +P C Y K + GD
Sbjct: 583 CEMENYIFSSDKSETGRVCPACNDGTLGLNISK--NGIFLGCSGYPECKY-TKNVGGDLV 639
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
DD + NV PK++G A+ +++ LK GPYG Y+Q+G D+ G KRA++
Sbjct: 640 DDVD-------NVQYPKVLGIDTATCQEIYLKKGPYGVYLQIGSDKNG---KRAAIPKNM 689
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+ + + L+ A ++L P++LG HP+ + I L L + G + + S+ DV
Sbjct: 690 NANLLDLQMAEKILNLPISLGTHPETCKEIKLGLGKFGAYILYEGKYFSIKNESNFLDVK 749
Query: 1127 LEKALEFLSGKDVRRCGRPKG 1147
LE A++ ++ R G
Sbjct: 750 LEDAIDIIANSSTNGVIRSLG 770
>gi|49475581|ref|YP_033622.1| DNA topoisomerase I [Bartonella henselae str. Houston-1]
gi|49238388|emb|CAF27615.1| DNA topoisomerase I [Bartonella henselae str. Houston-1]
Length = 853
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/800 (43%), Positives = 487/800 (60%), Gaps = 29/800 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+V+ S+GHVRDL A+ GSV PD DFSM W+V SAA
Sbjct: 2 NIVIVESPAKAKTINKYLGSQYKVVASFGHVRDLPAKDGSVLPDQDFSMKWDVDSAAAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L + V RVVF+ IT+ S+
Sbjct: 62 LNEIAKAVKEADSLILATDPDREGEAISWHILDVLRQKKVLKDK-PVKRVVFNAITKKSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDR
Sbjct: 121 LDAMNNPRDIDTSLVNAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F ++YW++ L ++ F A LT F K++ +L I S +A I
Sbjct: 181 ESEIEHFIKEDYWSITTDL-----KTIRNDGFQARLTMFNQKKIGKLDIQSQEQADQIRL 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A + + + R P+ TSTLQQ A++KL FSA+ TM++AQKLYEG+++ +
Sbjct: 236 MLEKAKYHALSVEAKPTKRNPFPPFTTSTLQQAASSKLGFSASRTMQIAQKLYEGIEI-N 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R +I E +GS + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GEMAGLITYMRTDGVQIAPEAIDSARKVIHESFGSDYIPEK-PRFYSTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD +R+P + LD D KLY LIW R +A QM+ A + + V+I + R
Sbjct: 354 RPTDFQRIPNQVRNFLDSDQAKLYELIWKRAVASQMRSAEIERTTVEIEAQQGENYANLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S + F GF + Y D + +EEN+ L + TG+ L +V+ QH
Sbjct: 414 ATGSVIRFDGFLSLYTD--------QRDEENNEENETTRLPQINTGEELTKEKVDAIQHT 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KKLEELGIGRPSTYASTL L DR Y+ + R L P+ +GR+V+AFL
Sbjct: 466 TEPPPRYSEASLIKKLEELGIGRPSTYASTLATLSDRGYIIIDKRKLIPDVKGRIVTAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F+ +Y FTAD+E +LD +S G WK +L D+W F++ T Q L I V +L
Sbjct: 526 ENFFNRYVEYGFTADLEEKLDLISDGKLSWKDVLRDFWDGFNASITNIQELRITNVLDVL 585
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
T F + RSCP+C G L K+ R+GA F+GC+ +P C Y + L D
Sbjct: 586 NVTLAPLAFPVREDGSDVRSCPLCTNGQLSLKLGRYGA--FVGCSNYPECKY-TRQLGTD 642
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
EE+ RN DEP ++G P + + V L++G +G Y+QLGE + KRA +
Sbjct: 643 PGEENEAIRN---DEPVILGVDPKTGKDVTLRNGRFGPYIQLGESKEA---KRAGLPKEW 696
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+ ITLE AL L+ P +G HP+ G+ I + R G + H A + + D+
Sbjct: 697 QAEKITLEKALSLISLPREIGIHPETGKTITATIGRYGPYLTHDGKYAPLLNVDEVFDIG 756
Query: 1127 LEKALEFLSGKDVRRCGRPK 1146
+ +A+ L+ K + R +
Sbjct: 757 INRAVTVLAEKQENKTKRSR 776
Score = 46.6 bits (109), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 23/131 (17%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ IG HP + + + G YG Y+ + K A + ++ +V I + A+ +L
Sbjct: 713 PREIGIHPETGKTITATIGRYGPYLT-------HDGKYAPLLNVDEVFDIGINRAVTVLA 765
Query: 1082 YP---------------VNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
LGNHP DG + +R R G V + A++PK+ P +VT
Sbjct: 766 EKQENKTKRSRTTTAALATLGNHP-DGGVVTVRNGRYGPYVNWGKVNATLPKDKDPINVT 824
Query: 1127 LEKALEFLSGK 1137
L +ALE +S K
Sbjct: 825 LSEALELISVK 835
>gi|288958694|ref|YP_003449035.1| DNA topoisomerase I [Azospirillum sp. B510]
gi|288911002|dbj|BAI72491.1| DNA topoisomerase I [Azospirillum sp. B510]
Length = 932
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/834 (43%), Positives = 496/834 (59%), Gaps = 84/834 (10%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G +VV+VES KAK I YLGD Y V+ S+GHVRDL AR GSVRPD+DF+M WE+ +
Sbjct: 3 GSNVVIVESPAKAKTINKYLGDDYTVIASFGHVRDLPARDGSVRPDEDFAMEWELGDRSK 62
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ I A+ A+ + LA+DPDREGEAIAWH+ E+L+++ L +N V RV F+EIT++
Sbjct: 63 RHIDEIAKAVKSADRIYLATDPDREGEAIAWHLSELLREKH-LSDNRDVQRVTFNEITKS 121
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+++ A+ R + LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC
Sbjct: 122 AVQTAMANPRAVSQELVDAYLARRALDYLVGFTLSPVLWRKLPGSKSAGRVQSVALRLIC 181
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI+ FKPQEYW++ AV S S +F A LT KRL++ + + A+
Sbjct: 182 ERESEIEVFKPQEYWSI-AVGFTTPSGS----AFTASLTQLDGKRLDKFGLPNREAAEAA 236
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
KI +F V + +R R+NP+P + TSTLQQ+A+ KL F AT TM+ AQKLYEGV
Sbjct: 237 VAKILPRSFAV-SSVERKQSRRNPSPPFTTSTLQQEASRKLGFGATRTMRTAQKLYEGVD 295
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ G GLITYMRTDG+ +S EA R LI YG + P++ PR Y KNAQEAH
Sbjct: 296 I-GGETVGLITYMRTDGVSLSQEAIDGARGLIGSHYGERYVPDQ-PRVYKTAAKNAQEAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG----NADE 763
EAIRPTD+ R P ++ L++D L+LY LIW RT+A QM+ A + Q+ VDI N +
Sbjct: 354 EAIRPTDLHRRPETVAAYLEQDELRLYELIWKRTLASQMESAVLDQVAVDIASPSDNGAK 413
Query: 764 SIVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
++V R++ S V F GF Y ED D A E+E+ +R L ++ GD L G++
Sbjct: 414 AVVLRATGSIVVFDGFLKVYQEDRDDAA----EDEQQERR-----LPAMDQGDALARGDI 464
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
QH TQPP RYSE SLVKKLEELGIGRPSTYAS L+VLQDRNYV + R PE RGR
Sbjct: 465 AQDQHFTQPPPRYSEASLVKKLEELGIGRPSTYASILQVLQDRNYVRLDKRRFIPEDRGR 524
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+AFL ++F +Y+FTA++E +LD +S G +WK +L D+W+ F + L I
Sbjct: 525 LVTAFLENFFHRYVEYNFTAELENQLDEISDGKIDWKTVLRDFWTAFDVAVNGTKDLTIT 584
Query: 943 QVEKMLEKTFGDSLFASLP---NKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYI 999
QV L+ G F + + R CPVC EG L K+ + GA FIGC+++P C Y
Sbjct: 585 QVLTTLDNELGAHFFPAATEGGHDPRVCPVCREGRLGLKLGKMGA--FIGCSRYPDCRY- 641
Query: 1000 AKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGY---- 1055
+ L +DE Q P+ +G+ P + V ++ GP+G Y+QLG
Sbjct: 642 TRPLAVANDENGEAQEG-----PRELGNDPETGLPVTVRRGPFGAYIQLGPAPAAATPPE 696
Query: 1056 -------------------------------LPKRASVSHIKDVDSITLEDALELLRYPV 1084
LPK + + DVD L+ AL LL P
Sbjct: 697 EPAAEEPAADGKKPKAKKKKKDEAPKPKRVSLPKGMAAA---DVD---LDTALRLLALPR 750
Query: 1085 NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND----VTLEKALEFL 1134
+GNHP+ G+ I + R G ++H SV K++ +D + + +A++ L
Sbjct: 751 AIGNHPETGEEISAGIGRFGPYLKH----GSVYKSLTADDDVLTIGINRAVDLL 800
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 15/121 (12%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ IG+HP + E++ G +G Y++ G S++ DV +I + A++LL
Sbjct: 749 PRAIGNHPETGEEISAGIGRFGPYLKHGS-------VYKSLTADDDVLTIGINRAVDLLA 801
Query: 1082 YPV--------NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEF 1133
LG+HPK G+PI + R G V+H AS+PK +P+ VTLE+ALE
Sbjct: 802 GAAKKASAPAKTLGDHPKTGKPITMGSGRFGPYVKHASVYASIPKGTEPDSVTLEQALEL 861
Query: 1134 L 1134
+
Sbjct: 862 I 862
>gi|403530527|ref|YP_006665056.1| DNA topoisomerase I [Bartonella quintana RM-11]
gi|403232599|gb|AFR26342.1| DNA topoisomerase I [Bartonella quintana RM-11]
Length = 806
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/802 (43%), Positives = 489/802 (60%), Gaps = 29/802 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DFSM W+V SAA
Sbjct: 2 NIVIVESPAKAKTINKYLGSQYKVLASFGHVRDLPAKDGSVLPDQDFSMKWDVDSAASKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L + V RVVF+ IT+ S+
Sbjct: 62 LNEIAKAVKEADSLILATDPDREGEAISWHILDILRQKKVLKDK-PVKRVVFNAITKKSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDR
Sbjct: 121 LDAMNNPRDIDTSLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F ++YW++ L ++ F A LT F K++ +L I S +A I
Sbjct: 181 ESEIEHFIKEDYWSITTDL-----KTIRNEGFQARLTMFNHKKIGKLDIQSQEQADQIRL 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SA + + + R P+ TSTLQQ A++KL FSA+ TM++AQKLYEGV++ +
Sbjct: 236 MLESAKYHTLSVEAKPTKRNPFPPFTTSTLQQAASSKLGFSASRTMQIAQKLYEGVEI-N 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R +I E +GS + PE+ PR Y K KN QEAHEAI
Sbjct: 295 GEMAGLITYMRTDGVQIAPEAIDSARKVIHESFGSDYVPEK-PRFYSTKAKNTQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD +R+P + LD D +KLY LIW R +A QM+ A + + V+I + R
Sbjct: 354 RPTDFQRIPNQVRNFLDSDQVKLYELIWKRAIASQMRSAEIERTTVEIEAQQGENHANLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ S + F GF + Y D + +EEN+ L + TG+ L +VE QH
Sbjct: 414 AIGSVIRFDGFISVYTD--------QRDEENNEENEITHLPQINTGETLTKEKVEAIQHS 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KKLEELGIGRPSTYASTL L DR Y+ + R L P+ +GR+V+AFL
Sbjct: 466 TEPPPRYSEASLIKKLEELGIGRPSTYASTLATLSDRGYIIIDKRKLIPDVKGRIVTAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F+ +Y FTAD+E +LD +S G WK +L ++W F++ T Q L I V +L
Sbjct: 526 ENFFNRYVEYGFTADLEEKLDLISDGKLSWKDVLRNFWDGFNASITNIQELRITNVLDVL 585
Query: 949 EKTFGDSLFASLP--NKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
T +F N RSCP+C G L K+ R+GA F+GC+ +P C Y + L D
Sbjct: 586 NITLAPLIFPEREDGNNVRSCPLCSSGQLSLKLGRYGA--FVGCSNYPECKY-TRQLGTD 642
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
EE+ + RN DEP ++G P + + V L++G +G Y+Q+GE + KR +
Sbjct: 643 PGEENEVMRN---DEPVMLGIDPKTGKDVSLRNGRFGPYIQVGEQKEA---KRIGLPKEW 696
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+ +TL+ AL L+ P +G HP+ G+ I + R G + H A + + D+
Sbjct: 697 QTEKMTLDKALALISLPREIGIHPETGKIITATIGRYGPYLAHDGKYAPLLHTDEIFDIG 756
Query: 1127 LEKALEFLSGKDVRRCGRPKGK 1148
+ +A+ L+ K + R + K
Sbjct: 757 INRAVTVLAEKQENKTKRNRTK 778
>gi|75675904|ref|YP_318325.1| DNA topoisomerase I [Nitrobacter winogradskyi Nb-255]
gi|74420774|gb|ABA04973.1| DNA topoisomerase I [Nitrobacter winogradskyi Nb-255]
Length = 911
Score = 640 bits (1651), Expect = e-180, Method: Compositional matrix adjust.
Identities = 347/813 (42%), Positives = 491/813 (60%), Gaps = 48/813 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL S+GHVRDL A++GSV PD +F M+WEV A
Sbjct: 2 NIVIVESPAKAKTINKYLGTSYEVLASFGHVRDLPAKNGSVDPDANFQMIWEVDPKAAGR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I +L GA+ LILA+DPDREGEAI+WH++E+L+Q+ AL + + RVVF+ IT+ ++
Sbjct: 62 LNDIAKSLKGADKLILATDPDREGEAISWHVLEVLKQKRALKDQ-KIERVVFNAITKQAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 TEAMKSPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F P+EYW++ L + D A L K++ +L IG+ EA+D +
Sbjct: 181 ELEIEKFVPREYWSLVTTLATPRGETFD-----ARLVGADGKKIQRLDIGNGAEAEDFRK 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I +ANF V + R+NP P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEG+ +
Sbjct: 236 AIEAANFTV-STVEAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDV- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ I A + R +I E YG + PE PR+Y K KNAQEAHEA
Sbjct: 294 GGETTGLITYMRTDGVQIDGSAITQARKVIGEDYGHAYVPE-APRQYQTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVF 767
IRPTD+ R P+ + LD D +LY LIW RT+A QM+ A + + VDI ++
Sbjct: 353 IRPTDLSRRPSDMKRRLDADQARLYELIWIRTIASQMESAELERTTVDIAARAGARTLEL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+S V+F GF A Y+ E +++ E L ++ G+ L + + QH
Sbjct: 413 RASGQVVKFDGFLALYQ----------EGRDDEEDEDSRRLPAMSEGEALRRENLSVTQH 462
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP R+SE SLVK++EELGIGRPSTYAS L+VL+DR YV ++ + LY E +GR+V AF
Sbjct: 463 FTEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVKLEKKRLYGEDKGRVVIAF 522
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L ++F+ +Y FTA++E +LD +S W+ +L D+W F + + + +V +
Sbjct: 523 LENFFARYVEYDFTANLEEQLDRISNNEVSWQQVLKDFWDDFIGVVNEIKDVRVSEVLDV 582
Query: 948 LEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
L+ G ++A P +D R CP CG G L K +FGA F+GC+ +P C +
Sbjct: 583 LDNMLGPHIYA--PREDGGDPRQCPTCGTGRLNLKAGKFGA--FVGCSNYPECRHTR--- 635
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRA 1060
L + +++G P S V +KSG +G Y+QLGE G PKRA
Sbjct: 636 --------PLAADGEAGGDRVLGKDPESGLDVAVKSGRFGPYIQLGEASDYGEGEKPKRA 687
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
+ I L+ A++LL P +G HP+ G+PI + R G VRH +T AS+
Sbjct: 688 GIPKNTSPADIELDLAVKLLSLPREIGKHPETGEPITAGIGRFGPFVRHEKTYASLEAGD 747
Query: 1121 KPNDVTLEKALEFLSGKDV----RRCGRPKGKP 1149
+ D+ L +A+ ++ K RR G GKP
Sbjct: 748 EVFDIGLNRAVTLIAEKVAKGPSRRFGADPGKP 780
>gi|92117958|ref|YP_577687.1| DNA topoisomerase I [Nitrobacter hamburgensis X14]
gi|91800852|gb|ABE63227.1| DNA topoisomerase I [Nitrobacter hamburgensis X14]
Length = 936
Score = 640 bits (1651), Expect = e-180, Method: Compositional matrix adjust.
Identities = 353/821 (42%), Positives = 499/821 (60%), Gaps = 48/821 (5%)
Query: 343 PLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWE 402
PL + ++V+VES KAK I YLG YEVL S+GHVRDL A++GSV PD +F M+WE
Sbjct: 19 PLSYWNNMNIVIVESPAKAKTINKYLGASYEVLASFGHVRDLPAKNGSVDPDANFQMIWE 78
Query: 403 VPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVF 462
V A L I +L GA+ LILA+DPDREGEAI+WH++E+L+Q+ AL + + RVVF
Sbjct: 79 VDPKAVGRLNDIAKSLKGADKLILATDPDREGEAISWHVLEVLKQKRALKDQ-KIERVVF 137
Query: 463 HEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSA 522
+ IT+ ++ A++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS
Sbjct: 138 NAITKQAVTDAMKNPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSV 197
Query: 523 ALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSH 582
AL L+C RE+EI++F P+EYW++ A L DTF A L K++ +L IGS
Sbjct: 198 ALRLVCSREIEIEKFVPREYWSLIATLATPRG---DTFE--ARLVGADGKKIQRLDIGSG 252
Query: 583 TEAKDIEQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQK 641
EA+D + I +ANF ++ + R+NP P+ TSTLQQ+A+ KL F+ +TM++AQ+
Sbjct: 253 AEAEDFRKAIEAANF-IVSTVEAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQR 311
Query: 642 LYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVK 701
LYEG+ + G GLITYMRTDG+ I A + R +I E YG+ + P+ PR+Y K K
Sbjct: 312 LYEGIDI-GGETTGLITYMRTDGVQIDGSAITQARKVIGEDYGNAYVPD-APRQYQTKAK 369
Query: 702 NAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNA 761
NAQEAHEAIRPTD+ R PA + LD D +LY LIW RT+A QM+ A + + VDI
Sbjct: 370 NAQEAHEAIRPTDLSRRPADMKRRLDADQARLYELIWIRTIASQMESAELERTTVDIAAR 429
Query: 762 DESIVF--RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYL 819
S V R+S ++F GF A Y+ E +++ E L ++ G+ L
Sbjct: 430 AGSRVLELRASGQVIKFDGFLALYQ----------EGRDDEEDEDSRRLPAMSDGEALRR 479
Query: 820 GEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEF 879
+ + QH T+PP R+SE SLVK++EELGIGRPSTYAS L+VL+DR YV ++ + LY E
Sbjct: 480 ENLSVTQHFTEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVKLEKKRLYGED 539
Query: 880 RGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSL 939
+GR+V AFL ++F+ +Y FTA++E +LD +S W+ +L D+W+ F + +
Sbjct: 540 KGRVVVAFLENFFARYVEYDFTANLEEQLDRISNNEVSWQQVLKDFWNDFIGVVNEIKDV 599
Query: 940 HIHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPR 995
+ +V +L+ G ++A P +D R CP CG G L K +FGA F+GC+ +P
Sbjct: 600 RVSEVLDVLDNMLGPHIYA--PREDGGDPRQCPTCGTGKLNLKAGKFGA--FVGCSNYPE 655
Query: 996 CNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT-- 1053
C Y + L D + +++G P S V +KSG +G Y+QLGE
Sbjct: 656 CRY-TRPLAADGEAGGD----------RILGKDPESGLDVTVKSGRFGPYIQLGEPSDYG 704
Query: 1054 -GYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRT 1112
G PKRA + + L+ A++LL P +G HP+ G+PI + R G VRH +T
Sbjct: 705 EGEKPKRAGIPKNTSPADMELDLAVKLLSLPREIGKHPETGEPITAGIGRFGPFVRHEKT 764
Query: 1113 IASVPKNMKPNDVTLEKALEFLSGKDV----RRCGRPKGKP 1149
AS+ + D+ L +A+ ++ K RR G GKP
Sbjct: 765 YASLEAGDEVFDIGLNRAVTLIAEKIAKGPSRRFGADPGKP 805
>gi|349700386|ref|ZP_08902015.1| DNA topoisomerase I subunit omega [Gluconacetobacter europaeus LMG
18494]
Length = 911
Score = 639 bits (1649), Expect = e-180, Method: Compositional matrix adjust.
Identities = 351/794 (44%), Positives = 481/794 (60%), Gaps = 30/794 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD Y VL S+GHVRDL + GSVRPD+ F+MVWE +
Sbjct: 4 VVVVESPAKAKTINKYLGDNYTVLASFGHVRDLPPKDGSVRPDEGFAMVWETDERGSRQI 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GA++L LA+DPDREGEAI+WH+ +L++++ L + I V RV F+EIT+++IK
Sbjct: 64 AAIAKALRGAKHLYLATDPDREGEAISWHVRAILEEKNLL-KGIDVQRVTFNEITKSAIK 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R +D L++AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 TAMAHPRGLDFPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKP+EYW+V A + + F A LTH +L+Q + + A D
Sbjct: 183 AEIEVFKPREYWSVIARMTTPGGAA-----FSARLTHLDGHKLDQFDLNNEARAMDARAA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + +F V K +R + R P P+ TST+QQ+A+ KL A M+ AQ+LYEG+ + G
Sbjct: 238 VEAGDFSVEKVERRKVRRNPPPPFTTSTMQQEASRKLGMGAQVAMRTAQQLYEGIDI-GG 296
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA IR I +G + PE+ R Y K KNAQEAHEAIR
Sbjct: 297 ETVGLITYMRTDGVQMAGEAIAAIRGHIGHSFGEQYVPEKA-RIYSTKAKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+RR PA ++ L + KLY L+W R++A QMQ A + Q+ VDI + + + R++
Sbjct: 356 PTDVRRTPADMARYLSPEQKKLYDLVWKRSVASQMQSAELDQVAVDIVDRQQRVTLRATG 415
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF Y E D R +++ DR +L ++K D + G+V +QH TQ
Sbjct: 416 SMIAFDGFLRLYSEGRDDSPAR--ADDDQDR-----MLPAMKERDAIGRGDVTAEQHFTQ 468
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKK+EE+GIGRPSTYAS L VL+DRNYV +++R PE RGR+V+AFL+
Sbjct: 469 PPPRYSEASLVKKMEEIGIGRPSTYASILTVLRDRNYVQLENRRFVPEDRGRLVTAFLTS 528
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F D FTA +E +LD++S G W+ ++ +WS FS + L I V L+
Sbjct: 529 FFERYVDTQFTAGLEEQLDDISGGRANWRDVMSAFWSDFSHAVDQTKDLKISDVITALDA 588
Query: 951 TFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
F + R C CG G L K+ R+GA FIGC+ +P C Y K +
Sbjct: 589 DLAPYFFPQREDGQDPRVCTACGTGRLGLKLGRYGA--FIGCSNYPTCQYTRKLVVDPSK 646
Query: 1009 E-EDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLPKRASVS 1063
E ED D +++G P + E+V ++ GP+G YVQ G ED+ PKRA++
Sbjct: 647 EGEDAAALK---DGMRVLGTGP-TGEEVTVRRGPWGLYVQQGEPDPEDKKAK-PKRATIP 701
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
D D ITLE A+ LL P +G HP+ G+PI L R G V+ S+ K+
Sbjct: 702 RGLDGDKITLEQAVGLLSLPRIVGIHPELGEPIEAGLGRFGPYVKMGAIYGSLDKDDDVL 761
Query: 1124 DVTLEKALEFLSGK 1137
V L +A++ L+ K
Sbjct: 762 TVGLNRAVDALAKK 775
>gi|85715463|ref|ZP_01046444.1| DNA topoisomerase I [Nitrobacter sp. Nb-311A]
gi|85697658|gb|EAQ35534.1| DNA topoisomerase I [Nitrobacter sp. Nb-311A]
Length = 910
Score = 639 bits (1649), Expect = e-180, Method: Compositional matrix adjust.
Identities = 348/813 (42%), Positives = 494/813 (60%), Gaps = 48/813 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL S+GHVRDL A++GSV PD +F M+WEV A
Sbjct: 2 NIVIVESPAKAKTINKYLGASYEVLASFGHVRDLPAKNGSVDPDANFQMIWEVDPKAAGR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I +L GA+ LILA+DPDREGEAI+WH++E+L+Q+ AL + + RVVF+ IT+ ++
Sbjct: 62 LNDIAKSLKGADKLILATDPDREGEAISWHVLEVLKQKRALKDQ-KIERVVFNAITKQAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 TEAMKSPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F P+EYW++ A L + F A L K++ +L IGS EA + +
Sbjct: 181 ELEIEKFVPREYWSLVATLATPRGET-----FEARLVGADGKKIQRLDIGSGAEADEFRK 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I +ANF V + R+NP P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEG+ +
Sbjct: 236 AIEAANFTV-STVEAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDV- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ I A + R +I E YG+ + P+ PR+Y K KNAQEAHEA
Sbjct: 294 GGETTGLITYMRTDGVQIDGSAITQARKVIGEDYGNAYVPD-APRQYQTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVF 767
IRPTD+ R P+ + LD D +LY LIW RT+A QM+ A + + VDI ++
Sbjct: 353 IRPTDLSRRPSDMKRRLDADQARLYELIWIRTIASQMESAELERTTVDIAARAGARTLEL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+S ++F GF A Y+ E +++ E L ++ G+ L ++ + QH
Sbjct: 413 RASGQVIKFDGFLALYQ----------EGRDDEEDEDGRRLPAMSEGEALKREDLSVTQH 462
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP R+SE SLVK++EELGIGRPSTYAS L+VL+DR YV ++ + LY E +GR+V AF
Sbjct: 463 FTEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVKLEKKRLYGEDKGRVVIAF 522
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L ++F+ +Y FTA++E +LD +S W+ +L D+W F + + + +V +
Sbjct: 523 LENFFARYVEYDFTANLEEQLDRISNNEISWQQVLKDFWDDFIGVVNEIKDVRVSEVLDV 582
Query: 948 LEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
L+ G ++A P +D R CP CG G L K +FGA F+GC+ +P C Y + L
Sbjct: 583 LDNMLGPHIYA--PREDGGDPRQCPTCGTGRLNLKAGKFGA--FVGCSNYPDCRY-TRPL 637
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRA 1060
D D +++G P S V +KSG +G Y+QLGE G PKRA
Sbjct: 638 AADGDAGGD----------RVLGKDPESGLDVAVKSGRFGPYIQLGEATDYAEGEKPKRA 687
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
+ + L+ A++LL P +G HP+ G PI + R G VRH +T AS+
Sbjct: 688 GIPKNTSPADMELDLAVKLLSLPREIGKHPETGAPITAGIGRFGPFVRHEKTYASLEAGD 747
Query: 1121 KPNDVTLEKALEFLSGKDV----RRCGRPKGKP 1149
+ D+ L +A+ ++ K RR G GKP
Sbjct: 748 EVFDIGLNRAVTLIAEKVAKGPSRRFGADPGKP 780
>gi|359792060|ref|ZP_09294889.1| DNA topoisomerase I subunit omega [Mesorhizobium alhagi CCNWXJ12-2]
gi|359251881|gb|EHK55194.1| DNA topoisomerase I subunit omega [Mesorhizobium alhagi CCNWXJ12-2]
Length = 874
Score = 639 bits (1649), Expect = e-180, Method: Compositional matrix adjust.
Identities = 354/806 (43%), Positives = 485/806 (60%), Gaps = 36/806 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y+VL SYGHVRDL A+ GSVRPDDDF+M W V + L
Sbjct: 3 VVVVESPAKAKTINKYLGRNYKVLASYGHVRDLPAKDGSVRPDDDFAMSWAVDGPSSKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A+ LILA+DPDREGEAI+WH++E+L+Q+ AL + V+RVVF+ IT+ S+
Sbjct: 63 TEIANAVKAADGLILATDPDREGEAISWHVLEVLKQKRALKDK-PVSRVVFNAITKQSVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+IDA LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDRE
Sbjct: 122 DAMANPRQIDAPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F +E+W V A+LD F A LT F+ K+L +L I S +A DI+
Sbjct: 182 SEIERFVREEFWQVAAILDTPRREK-----FEARLTAFEGKKLQKLDISSKAQADDIKAM 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A+F+ + + R P+ TSTLQQ A+++L FSA TM++AQ+LYEG+ + G
Sbjct: 237 LEGASFKALSVEAKPTRRNPGPPFTTSTLQQAASSQLGFSAVRTMQVAQRLYEGMDI-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AGLITYMRTDG+ ++ EA E R I + +G + PE+ PR Y K KNAQEAHEAIR
Sbjct: 296 ETAGLITYMRTDGVQMAPEALTEARKAIAKEFGDRYLPEK-PRYYSVKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVFRS 769
PTD R PA + LD D +LY +IW R +A QMQPA + + V+I N R+
Sbjct: 355 PTDFSRNPAAMRKYLDADQARLYEMIWKRAIASQMQPAEIERTTVEIEAVNGGRVAGLRA 414
Query: 770 SCSRVEFLGFQAAY---EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
S V F GF AAY +D D+ E+EEN R L ++ + L + Q
Sbjct: 415 VGSVVRFDGFIAAYTEHKDEDS------EDEENKR------LPEIRADEALTCDTILATQ 462
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RYSE SL+KK+EELGIGRPSTY + LK L+DR YVT+ R L P +GR+++
Sbjct: 463 HTTEPPPRYSEASLIKKMEELGIGRPSTYTAILKTLEDREYVTIDKRRLVPHSKGRLLTG 522
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL ++F + +Y FTA +E +LD +S G WK +L D+W FS+ + L + V
Sbjct: 523 FLENFFEKYVEYDFTASLEEKLDEISDGKLAWKDVLRDFWKDFSASVDDIKELRVTDVLD 582
Query: 947 MLEKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
L + +F + + R CP CG G L K+ ++GA F+GC+ +P C+Y +
Sbjct: 583 ALNEELAPLVFPAREDGSNPRICPKCGTGNLSLKLGKYGA--FVGCSNYPECSYTRQLGE 640
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSH 1064
+ + ++++ K +G P + E++ L+SG +G Y+Q GE G KR+S+
Sbjct: 641 AANGDGESIEGENGT---KALGKDPYTSEEITLRSGRFGPYIQRGE---GKEAKRSSLPK 694
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
DSI E AL LL P ++G HP+ G+ I L R G V H T A++
Sbjct: 695 GWTPDSIDHEKALALLSLPRDVGKHPESGKMISAGLGRYGPFVLHDGTYANLESIEDVFS 754
Query: 1125 VTLEKALEFLSGKDVR-RCGRPKGKP 1149
+ L +A+ ++ K + R GR G P
Sbjct: 755 IGLNRAVSVIAEKQSKGRGGRNGGTP 780
>gi|395789801|ref|ZP_10469309.1| DNA topoisomerase I [Bartonella taylorii 8TBB]
gi|395428023|gb|EJF94105.1| DNA topoisomerase I [Bartonella taylorii 8TBB]
Length = 862
Score = 639 bits (1649), Expect = e-180, Method: Compositional matrix adjust.
Identities = 347/791 (43%), Positives = 484/791 (61%), Gaps = 29/791 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+V+ S+GHVRDL+A+ GSV PD DFSM W++ SAA
Sbjct: 2 NIVIVESPAKAKTINKYLGSQYKVVASFGHVRDLSAKDGSVLPDQDFSMKWDIDSAAAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L + V RVVF+ IT+ S+
Sbjct: 62 LNEIAKAVKEADSLILATDPDREGEAISWHILDILRQKKVLKDK-PVKRVVFNAITKKSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDR
Sbjct: 121 LDAMNNPRDIDTSLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F ++YW++ L ++ SF A LT F K++ +L I S +A I
Sbjct: 181 ESEIEHFVKEDYWSITTDL-----KTIRNDSFQARLTMFNQKKIGKLDIQSQEQADQIRL 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A + + + R P+ TSTLQQ A++KL FSA+ TM++AQKLYEG+++ +
Sbjct: 236 MLEEAKYHTLSVEAKPTKRNPSPPFTTSTLQQAASSKLGFSASRTMQIAQKLYEGIEI-N 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R +I E +GS + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GEMAGLITYMRTDGVQIAPEAIDSARKVIHESFGSDYVPEK-PRFYSTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVFR 768
RPTD +R+P + LD D KLY LIW R +A QM+ A + + V+I R
Sbjct: 354 RPTDFQRIPNQVRNFLDSDQAKLYELIWKRAIASQMRSAEIERTTVEIKAQQGQNCANLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S + F GF + Y D + EEN L + T + L +VE QH
Sbjct: 414 ATGSIIRFDGFISVYTD--------QREEENSEENEATRLPQINTSETLTKEKVESVQHT 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KKLEELGIGRPSTYASTL L DR Y+ + R L P+ +GR+V+AFL
Sbjct: 466 TEPPPRYSEASLIKKLEELGIGRPSTYASTLSTLCDRGYIVIDKRKLIPDAKGRIVTAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F+ +Y FTAD+E +LD +S G WK ++ D+W F++ T + L I V +L
Sbjct: 526 ENFFNRYVEYGFTADLEEKLDLISDGKLSWKDVMRDFWDGFNTSITSIKELRITNVLDVL 585
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
T F + RSCP+C G L K+ R+GA F+GC+ +P C Y + L D
Sbjct: 586 NVTLAPLAFPVREDGSDIRSCPLCKNGQLSLKLGRYGA--FVGCSNYPECKYTHQ-LGTD 642
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
EE+ RN DEP ++G P + +++ L++G +G Y+QLGE + KRA +
Sbjct: 643 TGEENEAMRN---DEPVILGVEPKTGKEISLRNGRFGPYIQLGESKE---VKRAGLPKEW 696
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
++ITL+ AL LL P +G HP+ G+ I + R G + H A + + D+
Sbjct: 697 QTENITLDKALALLSLPREIGTHPETGKIITATIGRYGPYLSHDSKSAPLLHADEVFDIG 756
Query: 1127 LEKALEFLSGK 1137
+ +A+ L+ K
Sbjct: 757 INRAVTVLAEK 767
>gi|254502824|ref|ZP_05114975.1| DNA topoisomerase I [Labrenzia alexandrii DFL-11]
gi|222438895|gb|EEE45574.1| DNA topoisomerase I [Labrenzia alexandrii DFL-11]
Length = 913
Score = 639 bits (1648), Expect = e-180, Method: Compositional matrix adjust.
Identities = 354/810 (43%), Positives = 493/810 (60%), Gaps = 50/810 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VV+VES KAK I YLG Y VL SYGHVRDL + GSV+PD+DF+M W+V S +
Sbjct: 2 NVVIVESPAKAKTINKYLGSDYTVLASYGHVRDLPPKDGSVKPDEDFAMSWQVDSKSQKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A+ LILA+DPDREGEAI+WH++E+LQ++ L + + RVVF+ IT+ +I
Sbjct: 62 LSEIASAVKDADRLILATDPDREGEAISWHVLEVLQKKRVLKDK-QIERVVFNAITKKAI 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R++D LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LICDR
Sbjct: 121 LEAMDNPRQLDTPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
EMEI+ F PQEYW++ A + ++ + D F A LT + K++ +L + + EA I+
Sbjct: 181 EMEIETFNPQEYWSIFAGM---KTPAGDVFQ--AGLTGYDGKKIGRLDVKTGEEAGAIKT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SA+F+V + + R P+ TSTLQQ+A+ KL FSA+ TM++AQKLYEG+ +
Sbjct: 236 MLESASFKVDSVASKPAKRNPAAPFTTSTLQQEASRKLGFSASRTMQVAQKLYEGISI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G +GLITYMRTDG+ I+ EA RS+I + +G + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETSGLITYMRTDGVSIAGEAIAAARSVIGQDFGDKYVPEK-PRAYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD+ R P ++ LD+D KLY LIW RTMA QM+ A + + ++I + + R
Sbjct: 354 RPTDLARRPKDVAAFLDQDQAKLYELIWKRTMASQMESAVLERTTIEILADGSGKRANLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVE----- 823
++ S V F GF A Y+ E+ ++D E L ++ G L ++
Sbjct: 414 ATGSVVRFDGFLALYQ----------ESRDDDDEEGSKRLPAVDQGAALTATSIDGTAEP 463
Query: 824 --LKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRG 881
QH T PP RY+E SLVKK+EELGIGRPSTYASTL+ L+DR YV ++ + L P+ +G
Sbjct: 464 INSAQHFTTPPPRYTEASLVKKMEELGIGRPSTYASTLQTLRDREYVELEKKQLVPQDKG 523
Query: 882 RMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI 941
R+V+AFL +F ++ FTA +E +LD +SAG W +L D+W+ FS + L +
Sbjct: 524 RIVTAFLESFFRRYVEFDFTASLEEQLDKISAGELSWLDVLKDFWTAFSGSVDEIKDLRV 583
Query: 942 HQVEKMLEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+V L + G +F P K+ R CP C G L KVSR+GA FIGC +P C
Sbjct: 584 AEVIDSLNELLGPHIF---PEKEDGTDPRKCPACDTGKLSLKVSRWGA--FIGCENYPEC 638
Query: 997 NYIAK--TLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTG 1054
Y + G++ E D D PK+ G P + +V L++G +G YVQLG +
Sbjct: 639 GYTRQLGKPSGEEGEAD--------DGPKVFGEDPETGMEVSLRTGRFGPYVQLGNEAK- 689
Query: 1055 YLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIA 1114
PKR+S+ + LE AL+LL P +G HP+DG+ I L R G V H T A
Sbjct: 690 --PKRSSLPKGWSAADMDLEKALQLLSLPREVGEHPEDGKMITAGLGRYGPFVLHDGTYA 747
Query: 1115 SVPKNMKPNDVTLEKALEFLSGKDVRRCGR 1144
++ + V + +A++ L+ K + GR
Sbjct: 748 NLSSPDEVFSVGINRAVDALAEKRAKGGGR 777
>gi|319898959|ref|YP_004159052.1| DNA topoisomerase I [Bartonella clarridgeiae 73]
gi|319402923|emb|CBI76474.1| DNA topoisomerase I [Bartonella clarridgeiae 73]
Length = 863
Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust.
Identities = 349/804 (43%), Positives = 499/804 (62%), Gaps = 31/804 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+V+ S+GHVRDL+A+ GSV PD DF+M W++ +A+
Sbjct: 2 NIVIVESPAKAKTINKYLGSQYKVIASFGHVRDLSAKDGSVLPDKDFAMKWDIDTASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L+ N + RVVF+ IT+ S+
Sbjct: 62 LNEIAKAVKEADSLILATDPDREGEAISWHILDILKQKKVLN-NKPIKRVVFNAITKKSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +IC+R
Sbjct: 121 LAAMKNPRDIDISLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICNR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI++F ++YW++ L +L F A LT F K+L +L I S +A I
Sbjct: 181 ESEIEQFIKEDYWSITTYL-----KTLQDNIFYARLTEFNHKKLGKLDIRSQEQADQIFF 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ AN++ + + ++KNP+P + TSTLQQ A++KL FSA+ TM++AQKLYEGV++
Sbjct: 236 MLEKANYRTLSIEAKP-IKKNPSPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVEI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
+G AGLITYMRTDG+ ++ EA R I + +G+H+ PE+ PR Y K KNAQEAHEA
Sbjct: 294 NGETAGLITYMRTDGVQMASEAIDAARKAIIDSFGNHYVPEK-PRFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES--IVF 767
IRPTD +R P + +LD D KLY LIW R +A QM+ A + + V+I E
Sbjct: 353 IRPTDFKRHPNQICNVLDSDQAKLYELIWKRAIASQMRSAEIERTTVEIEAFQEENHANL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF +AY D + EEN + L + G+ L +VEL QH
Sbjct: 413 RAIGSVIHFDGFISAYTD--------PKEEENSEEDESTRLPQINIGESLKKEKVELTQH 464
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE +L+KKLEELGIGRPSTYASTL L DR Y+ R L P+ +GR+V+AF
Sbjct: 465 TTEPPPRYSESALIKKLEELGIGRPSTYASTLSTLCDRGYIITDKRKLIPDVKGRIVTAF 524
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L ++F+ +Y FTA++E +LD +S G WK +L D+W F++ T Q L I V +
Sbjct: 525 LENFFNRYVEYGFTANLEEKLDLISDGKLSWKDVLHDFWDEFNASITSIQELRIMNVLDV 584
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L T F + + RSCP+C G L K+ R+GA F+GC+ +P C Y + L
Sbjct: 585 LNVTLAPLAFPTREDGSDCRSCPLCINGQLSLKLGRYGA--FVGCSNYPECKYTCQ-LGT 641
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
D E+ + N DEP ++G P + + + L++G +G Y+QLGED+ KRAS+
Sbjct: 642 DTKEKSKVVHN---DEPIMLGIDPETGKDISLRNGRFGPYIQLGEDKKS---KRASLPKG 695
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+++I + AL LL P +G HP+ G+ I + R G + H A++ + D+
Sbjct: 696 WQIENINFDKALALLSLPREVGTHPETGKIITAAIGRYGPYLAHDGKYANLFSIDEVFDI 755
Query: 1126 TLEKALEFLSGKDVRRCGRPKGKP 1149
+ +A+ L+ K R + P
Sbjct: 756 GINRAITILAEKKNNETNRRRILP 779
>gi|58039716|ref|YP_191680.1| DNA topoisomerase I [Gluconobacter oxydans 621H]
gi|58002130|gb|AAW61024.1| DNA topoisomerase I [Gluconobacter oxydans 621H]
Length = 898
Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust.
Identities = 352/808 (43%), Positives = 486/808 (60%), Gaps = 35/808 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL S+GHVRDL + GSVRPD++F+M W+ +
Sbjct: 4 VVVVESPAKAKTINKYLGSGYTVLASFGHVRDLPPKDGSVRPDENFAMSWQTDERGAKQI 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GA+NL LA+DPDREGEAI+WH+ +L+++ L +N+ V RV F+EIT++++
Sbjct: 64 SAITKALKGAKNLYLATDPDREGEAISWHVRSVLEEKKLL-KNVDVHRVTFNEITKSAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ A RE+D L+ AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 AAMAAPRELDRPLIDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+P+EYWTV + +F A LTH +S++L+Q + + A
Sbjct: 183 AEIEVFRPKEYWTVTGGF-----TTPGKAAFQARLTHLKSEKLDQFDLNNEQLAFGARDT 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ F V ++ R P P+ TSTLQQ+A+ KL SA TM+ AQ+LYEGV L G
Sbjct: 238 VLGGQFTVRSVERKRTKRNPPPPFTTSTLQQEASRKLGMSAQTTMRTAQQLYEGVDL-RG 296
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA IR I + +G + P+ PR Y K KNAQEAHEAIR
Sbjct: 297 ETTGLITYMRTDGVTMAKEAIGSIRGHIGKAFGDEYVPDY-PRSYSTKAKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ P ++ L + KLY LIW R++A QMQ A + Q+ V + +A + R++
Sbjct: 356 PTDVFLTPQQVAHALTPEQKKLYELIWKRSVASQMQSAELDQVAVTLADASGQTLLRATG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y + G K +E+ + +L +K GD L G VE +QH TQP
Sbjct: 416 STIAFDGFLKLYIE---GRDDTKAEDEDGK-----LLPPMKEGDRLTTGAVEAEQHFTQP 467
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKK+EE+GIGRPSTYAS L VL+DRNYV + +R PE RGR+V+AFL+ +
Sbjct: 468 PPRYSEASLVKKMEEIGIGRPSTYASILGVLRDRNYVRLDARRFVPEDRGRLVTAFLTSF 527
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F D FTA +E +LD++S G +W ++ +W FS+ + L I V L++
Sbjct: 528 FERYVDTGFTASLEEQLDDISGGRADWHDVMAAFWHDFSAAVAQTKDLKISDVIDALDED 587
Query: 952 FGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDE 1009
G F P+ R C CG G L ++ +FGA FIGC+ +P C + + + +E
Sbjct: 588 LGPHFFPPRPDGADPRVCTSCGTGRLGLRLGKFGA--FIGCSNYPTCQFTRRLVA---EE 642
Query: 1010 EDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLPKRASVSHI 1065
DT N D PK++G P + E V ++ GPYG Y+Q G ED+ PKR ++
Sbjct: 643 GDTEGLN---DGPKVLGQDPETGEDVTIRRGPYGLYIQRGEPNPEDKKAK-PKRTTIPKG 698
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
D +++TLE AL LL P +G HP+ G+ I L R G V+ ++ K+ V
Sbjct: 699 LDGNTMTLEQALGLLSLPRLVGLHPETGEKIEAGLGRFGPYVKMGAIYGTLDKDDDVLTV 758
Query: 1126 TLEKALEFLSGK--DVRRCG-RPK-GKP 1149
L +A++ L+ K +R G PK G+P
Sbjct: 759 GLNRAVDALAKKLASIRNLGPHPKDGEP 786
>gi|407769489|ref|ZP_11116864.1| DNA topoisomerase I subunit omega [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407287411|gb|EKF12892.1| DNA topoisomerase I subunit omega [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 883
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 347/783 (44%), Positives = 481/783 (61%), Gaps = 48/783 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLGD Y+VL S+GH+RDL ++ GSV PD++F+MVWE +
Sbjct: 2 NLVIVESPAKAKTINKYLGDDYKVLASFGHIRDLPSKDGSVDPDNEFAMVWETDGRSEKQ 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
++ I A A+ + LA+DPDREGEAI+WHI+E+L+Q+ L + RVVFHEIT+ ++
Sbjct: 62 IREIASAARDADTIYLATDPDREGEAISWHILEVLEQKKLLRGR-DIHRVVFHEITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ RE++ LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL LIC+R
Sbjct: 121 TDAIANPRELNQELVDAYLARRALDYLVGFNLSPVLWRKLPGSRSAGRVQSVALRLICER 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI+ F+P EYW++EA E + F A LTH ++L++L++G+ A ++
Sbjct: 181 EIEIEAFRPDEYWSLEAGFKVPEGN------FTARLTHLNGEKLDKLALGNEGAATIAKE 234
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
K+ S ++ V K ++ + R+ P+ TSTLQQ+A+ KL F A TM+LAQ+LYEGV +
Sbjct: 235 KVESRSYTVSKVERKDVKRRPQPPFTTSTLQQEASRKLGFGAKRTMQLAQRLYEGVDI-G 293
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTD + +S EA R LI + YG ++ P R + K KNAQEAHEAI
Sbjct: 294 GETVGLITYMRTDAVVLSGEALAAARRLISKDYGENYLPPSA-RSFANKAKNAQEAHEAI 352
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ R P ++ LD+D L LY+LIW RT+ACQM+ A Q+ VD+ + D +V R++
Sbjct: 353 RPTDLFRRPDQVARHLDKDQLALYTLIWKRTVACQMEDAKFDQVAVDLSSNDNHVVLRAN 412
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S V+F GF Y++ + +ENDR L L G LG+V + QH TQ
Sbjct: 413 GSVVKFDGFLKLYQE----GKDDEAEDENDRR-----LPPLNEGQKPDLGKVSIDQHFTQ 463
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E SLVKK+EELGIGRPSTYAS + VLQDR+YVT+ R + RGR+V+AFLS
Sbjct: 464 PPPRYTEASLVKKMEELGIGRPSTYASIISVLQDRDYVTLDKRRFVAQDRGRLVTAFLSK 523
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F Y+FTAD+E +LD+VS G W+ +L +WS F A+ L I V L+
Sbjct: 524 FFERYVQYNFTADLENQLDDVSNGSLAWRDVLNQFWSAFKGNVDEAKELKITDVLDALQV 583
Query: 951 TFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY---IAKT 1002
+ LF P +D CP C +GTL K+ +FGA F+GC+ +P CN+ +
Sbjct: 584 MLENYLF---PTRDDGTDPHKCPKCTDGTLSLKLGKFGA--FLGCSNYPECNFTRPLVAN 638
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGED-----RTG--- 1054
G D E D+ PK++G + +++ L+ GPYG YVQLGE+ + G
Sbjct: 639 ENGGDSELDS--------GPKVLGIDKETGKEITLRKGPYGVYVQLGEEEEVEGKNGKPK 690
Query: 1055 -YLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTI 1113
PKR S+ + + L A ELL P +G P G+ I + R G V+
Sbjct: 691 KVKPKRTSLPKGLEPSVVDLTKAEELLTLPRLVGVFPDTGEEIKANVGRFGPYVQAGSIF 750
Query: 1114 ASV 1116
AS+
Sbjct: 751 ASL 753
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 12/124 (9%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
P+L+G P + E++ G +G YVQ G AS+ DV + A+ L+
Sbjct: 720 PRLVGVFPDTGEEIKANVGRFGPYVQAGS-------IFASLKAEDDVLMVGENRAIALIA 772
Query: 1081 ----RYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSG 1136
+ +G HP DG+PI L R G V+H++T A++P++ DVTLE A+ L
Sbjct: 773 DKREKAGKEIGKHPDDGEPIFLADGRWGPFVKHKKTNANLPRDTNKEDVTLEMAIAALKE 832
Query: 1137 KDVR 1140
K+ +
Sbjct: 833 KEAK 836
>gi|209884917|ref|YP_002288774.1| DNA topoisomerase I [Oligotropha carboxidovorans OM5]
gi|337741441|ref|YP_004633169.1| DNA topoisomerase 1 [Oligotropha carboxidovorans OM5]
gi|386030457|ref|YP_005951232.1| DNA topoisomerase 1 [Oligotropha carboxidovorans OM4]
gi|209873113|gb|ACI92909.1| DNA topoisomerase 1 [Oligotropha carboxidovorans OM5]
gi|336095525|gb|AEI03351.1| DNA topoisomerase 1 [Oligotropha carboxidovorans OM4]
gi|336099105|gb|AEI06928.1| DNA topoisomerase 1 [Oligotropha carboxidovorans OM5]
Length = 913
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 349/811 (43%), Positives = 490/811 (60%), Gaps = 46/811 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL SYGHVRDL A++GSV PD +F M+WE A +
Sbjct: 2 NLVIVESPAKAKTINKYLGSSYEVLASYGHVRDLPAKNGSVDPDANFQMIWETDPKAASR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL GA+ LILA+DPDREGEAI+WH++E+++Q+ AL + V RVVF+ IT+ S+
Sbjct: 62 LNDIAKALKGADKLILATDPDREGEAISWHVLEVMKQKRALKDQ-KVERVVFNAITKQSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 TEAMNNPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F +EYW++ A L + DTF A L K++ +L IG+ EA+D ++
Sbjct: 181 EIEIEKFVAREYWSLVATLATPRN---DTFE--ARLVGADGKKIQRLDIGTGAEAEDFKK 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +A F V + R P+ TSTLQQ+A+ KL F+ ++TM++AQ+LYEG+ +
Sbjct: 236 ALETAAFTVSLVEAKPARRNPQAPFTTSTLQQEASRKLGFAPSHTMRIAQRLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I+ EA +R +I E YGS++ P PR+Y K KNAQEAHEAI
Sbjct: 295 GETTGLITYMRTDGVSIAPEAIPALRKVIAEEYGSNYVPS-APRQYTSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFR 768
RPTD+ R PA L LD D +LY LIW R +A QM+ A + + VDI ++ R
Sbjct: 354 RPTDVSRRPAKLKARLDNDQYRLYELIWMRAIASQMESAELERTTVDITAKAGARTLELR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+S V+F GF A Y++ G E+EE+ R L ++ G+ L + + QH
Sbjct: 414 ASGQVVKFDGFLAVYQE---GRDDDPEDEESRR------LPAMSEGEALKRESLAVTQHF 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SLVK++EELGIGRPSTYAS L+VL+DR YV ++ + L E +GR+V AFL
Sbjct: 465 TEPPPRYSEASLVKRMEELGIGRPSTYASILQVLKDRGYVKLEKKRLSAEDKGRVVVAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F+ ++ FTAD+E +LD +S WK +L D+W F + + + +V +L
Sbjct: 525 QKFFARYVEFDFTADLEEQLDKISNNEVAWKNVLSDFWRDFIGAVDEIKDVKVSEVLDVL 584
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
+ G+ ++ P D R CP CG G L K +FGA F+GC+ +P C Y + L
Sbjct: 585 DAMLGEHIYE--PRADGGDPRQCPSCGTGRLNLKAGKFGA--FVGCSNYPECRY-TRPLA 639
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRAS 1061
D +++G P + V +K+G +G Y+QLGE G PKRA
Sbjct: 640 ASSGTSD-----------RVLGKDPKTNLDVAVKAGRFGPYIQLGEPNDYAEGEKPKRAG 688
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + L+ A++LL P ++G HP+DG+ I + R G VRH +T AS+
Sbjct: 689 IPKNMSPADVELDLAIKLLSLPRDVGPHPEDGEIITAGIGRFGPFVRHGKTYASLEAGDD 748
Query: 1122 PNDVTLEKALEFLSGKDV----RRCGRPKGK 1148
+ L +A+ ++ K RR G GK
Sbjct: 749 VYTIGLNRAVTLIAEKIAKGPSRRFGADPGK 779
>gi|357025318|ref|ZP_09087446.1| DNA topoisomerase I subunit omega [Mesorhizobium amorphae CCNWGS0123]
gi|355542800|gb|EHH11948.1| DNA topoisomerase I subunit omega [Mesorhizobium amorphae CCNWGS0123]
Length = 868
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 349/804 (43%), Positives = 487/804 (60%), Gaps = 32/804 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M W V +A+ L
Sbjct: 3 VVVVESPAKAKTINKYLGKNYKVLASFGHVRDLPAKDGSVRPDEDFAMSWAVDTASGKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A+ LILA+DPDREGEAI+WH++E+L+Q+ AL + V+RVVF+ IT++S+
Sbjct: 63 ADIAKAVKDADGLILATDPDREGEAISWHVLEVLKQKRALKDK-PVSRVVFNAITKSSVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+IDA LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDRE
Sbjct: 122 EAMANPRQIDAPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F +EYW + A+L + + F A LT F+ K+L +L I + +A DI+
Sbjct: 182 SEIERFIREEYWQIAAILGTPRNEN-----FEARLTAFERKKLQKLDIANKAQADDIKAM 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A F+ + + R P+ TSTLQQ A++ L FSA+ TM++AQ+LYEG+ + G
Sbjct: 237 LEGAAFKALSVEAKPTKRNPGPPFTTSTLQQAASSGLGFSASRTMQVAQRLYEGMDI-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AGLITYMRTDG+ ++ EA R I + +G+ + PE+ PR Y K KNAQEAHEAIR
Sbjct: 296 ETAGLITYMRTDGVQMAPEAIDAARDAITKEFGAKYLPEK-PRFYTTKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVFRS 769
PTD R PA + LD D +LY LIW R ++ QMQPA + + V+I N + R+
Sbjct: 355 PTDFMRTPASVRQYLDADQARLYELIWKRAISSQMQPAEIERTTVEIEAVNGARTAELRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S V F GF AAY D + +E+ E L ++ G+ L + QH T
Sbjct: 415 VGSVVRFDGFIAAYTD---------QKDEDAEDEESRRLPEIRAGEQLARQAINATQHTT 465
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE SL+KKLEELGIGRPSTY + LK L+DR+YV + R L P+ +GR++SAFL
Sbjct: 466 EPPPRYSEASLIKKLEELGIGRPSTYTAILKTLEDRDYVEIDKRKLVPQAKGRLLSAFLE 525
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F +Y FTA +E +LD +S G WK +L D+W FS + L + V L
Sbjct: 526 SFFERYVEYDFTASLEEKLDEISDGKLAWKDVLRDFWKDFSGAVADIKELRVTDVLDALN 585
Query: 950 KTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
+ +F + + R CP CG G L K+ +FGA F+GC+ +P C++ +
Sbjct: 586 EELAPLVFPAREDGSNPRICPKCGTGNLSLKLGKFGA--FVGCSNYPECSFTRQL----G 639
Query: 1008 DEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
D + N N D+ K++G P + E++ L+SG +G Y+Q G+ G KR+S+
Sbjct: 640 DAANPNGENGNGDDGTKMLGKDPYTAEEITLRSGRFGPYIQRGD---GKEAKRSSLPKGW 696
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
++I E AL LL P ++G HP+ G+ I L R G V H T A++ +
Sbjct: 697 TAETIDHEKALALLALPRDVGKHPESGKMISAGLGRYGPFVLHDGTYANLESIEDVFSIG 756
Query: 1127 LEKALEFLSGKDVR-RCGRPKGKP 1149
L +A+ ++ K ++ + GR G P
Sbjct: 757 LNRAVSVIAEKQLKGKNGRNGGTP 780
>gi|340776818|ref|ZP_08696761.1| DNA topoisomerase I subunit omega [Acetobacter aceti NBRC 14818]
Length = 902
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 354/816 (43%), Positives = 492/816 (60%), Gaps = 47/816 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD Y VL S+GHVRDL + GSV PD+DF+M W+ +
Sbjct: 4 VVVVESPAKAKTINKYLGDGYTVLASFGHVRDLPPKDGSVLPDEDFAMKWQSDERGQKQV 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GA L LA+DPDREGEAI+WH+ ML +++AL + + V RV F+EIT+ +IK
Sbjct: 64 AAIVKALKGAHTLYLATDPDREGEAISWHVKAMLAEKNAL-KGVNVQRVTFNEITKGAIK 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D L++AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 EAMAHPRDLDMPLIEAYLARRALDYLVGFTLSPVLWRKLPGSKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPA------HLTHFQSKRLNQLSIGSHTEA 585
EI+ FKP+EYWTV A TF PA LTH K+L+Q + + +A
Sbjct: 183 AEIEVFKPREYWTVGA-----------TFLTPAGAPFTTRLTHLGGKKLDQFDLANEEQA 231
Query: 586 KDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
+ + F V ++ + R P P+ TSTLQQ+A+ KL A TM+ AQ+LYEG
Sbjct: 232 FAARDAVLAGTFAVKSVERKKVKRNPPPPFTTSTLQQEASRKLGMGAQNTMRTAQQLYEG 291
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
+ L G GLITYMRTDG+ ++ EA +IR I + +G+++ P + PR Y K KNAQE
Sbjct: 292 IDL-GGETVGLITYMRTDGVTMAGEAIADIRRHIGKDFGANYVPAQ-PRVYSTKAKNAQE 349
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEA+RPTD+ R PA ++ L ++ +LY L+W R +A QMQ A + Q+ VD+ +
Sbjct: 350 AHEAVRPTDVSRTPASVAKYLSDEQRRLYELVWKRAVASQMQSAELDQVAVDVADQPGKT 409
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
V R++ S + F GF Y + + + ++E +L + DPL G+VE +
Sbjct: 410 VLRATGSIIAFDGFLKLYTEGRDESDKAADDESR-------MLPPMNERDPLKRGDVEAE 462
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH TQPP RYSE SLVKK+EE+GIGRPSTYAS L VL+DRNYV +++R PE RGR+V+
Sbjct: 463 QHFTQPPPRYSEASLVKKMEEIGIGRPSTYASILTVLRDRNYVRLEARRFMPEDRGRLVT 522
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
AFL +F D FTA +E +LD++SAG +W+ ++ +W FS+ + L I +V
Sbjct: 523 AFLVSFFERYVDPQFTAGLEEQLDDISAGHADWRKVMSAFWQAFSAAVAQTKDLTITEVI 582
Query: 946 KMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK 1001
L++ G F P D R C CG G L K+ R+GA FIGC+ +P C Y K
Sbjct: 583 DALDQDLGSHFFP--PTTDGTDPRVCTSCGTGRLGLKLGRYGA--FIGCSNYPECQYTRK 638
Query: 1002 TLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLP 1057
+ + + + D KL+G HP + E +++K GP+G YVQ G ED+ P
Sbjct: 639 LAVEGGEGDGSEELK---DGMKLLGQHPVTGEDIVVKRGPWGLYVQQGEPNPEDKKAK-P 694
Query: 1058 KRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVP 1117
KRAS+ ++++TL+ A+ LL P +G HP+ +PI L R G V+ S+
Sbjct: 695 KRASLPKGLSLENLTLDQAVGLLSLPRIVGIHPEFNEPIEAGLGRFGPYVKMGAIYGSLD 754
Query: 1118 KNMKPNDVTLEKALEFLSGK--DVRRCG-RPK-GKP 1149
K+ V L +A++ L+ K +R G PK G+P
Sbjct: 755 KDDDVLTVGLNRAVDALAKKIASIRNLGPHPKDGEP 790
>gi|39936187|ref|NP_948463.1| DNA topoisomerase I [Rhodopseudomonas palustris CGA009]
gi|39650042|emb|CAE28565.1| DNA topoisomerase I [Rhodopseudomonas palustris CGA009]
Length = 911
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 345/795 (43%), Positives = 489/795 (61%), Gaps = 39/795 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL S+GHVRDL A++GSV PD DF M+WEV A +
Sbjct: 2 NLVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDADFQMIWEVDPKAASR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL GA+ LILA+DPDREGEAI+WH++E+++Q+ AL + V RVVF+ IT+ S+
Sbjct: 62 LNDIAKALKGADKLILATDPDREGEAISWHVLEVMKQKRALKDQ-QVERVVFNAITKQSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 TDAMKHPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI++F P+EYW++ A + + F A L K++ +L IG+ EA+D ++
Sbjct: 181 ETEIEKFVPREYWSLIATMATPRGET-----FEARLVGADGKKIQRLDIGTGAEAEDFKK 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I +ANF+V + R+NP P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEGV +
Sbjct: 236 AIEAANFRVATVEAKP-ARRNPYAPFTTSTLQQEASRKLGFAPAHTMRVAQRLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ I A + R +I E +G+ + P+ PR+Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQIDSSAITQARKVIAEDFGNAYVPD-APRQYTAKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF-- 767
IRPTD+ R P+ +S LD D +LY LIW RT+A QM+ A + + VDI S V
Sbjct: 353 IRPTDLSRRPSDVSRNLDSDQARLYELIWIRTVASQMESAELERTTVDIEAKAGSRVLEL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ V+F GF AAY++ +++ E L ++ + L + + QH
Sbjct: 413 RATGQVVKFDGFLAAYQE---------GRDDDSEDEDSRRLPAMSENEALKREALAVTQH 463
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP R+SE SLVK++EELGIGRPSTYAS L+VL+DR YV ++ + L+ E +GR+V AF
Sbjct: 464 FTEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVRLEKKRLHGEDKGRVVVAF 523
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F+ +Y FTA +E +LD +S WK +L D+W F + L + QV +
Sbjct: 524 LESFFTRYVEYDFTAGLEEDLDRISNNEVSWKQVLSDFWRDFIGAVDEIKDLRVAQVLDV 583
Query: 948 LEKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L++ G ++ + + R CP CG G L K +FGA F+GC+ +P C Y
Sbjct: 584 LDEMLGPHIYPAREDGGDPRQCPSCGTGKLNLKAGKFGA--FVGCSNYPECRYTR----- 636
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRASV 1062
L ++ D +++G P S +V +KSG +G Y+QLGE + G PKRA +
Sbjct: 637 ------PLASDSAGDADRVLGTDPDSGLEVAVKSGRFGPYIQLGEAKDYAEGEKPKRAGI 690
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+ LE AL+LL P +G HP+ GQPI + R G V+H +T AS+
Sbjct: 691 PKGTSPSDVDLEMALKLLALPREVGKHPETGQPIKAGIGRFGPYVQHEKTYASLEAGDDV 750
Query: 1123 NDVTLEKALEFLSGK 1137
+ + L +A+ ++ K
Sbjct: 751 HTIGLNRAVTLIAEK 765
>gi|118590182|ref|ZP_01547585.1| DNA topoisomerase I [Stappia aggregata IAM 12614]
gi|118437154|gb|EAV43792.1| DNA topoisomerase I [Stappia aggregata IAM 12614]
Length = 887
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 358/800 (44%), Positives = 490/800 (61%), Gaps = 48/800 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VV+VES KAK I YLG Y VL SYGHVRDL A+ GSV PDD+F+M W+V + A
Sbjct: 2 NVVIVESPAKAKTINKYLGSDYTVLASYGHVRDLPAKDGSVLPDDNFAMSWQVDAKAQKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A+ LILA+DPDREGEAI+WH++E+LQ++ L + V RVVF+ IT+ +I
Sbjct: 62 LSEIASAVKDADRLILATDPDREGEAISWHVLEVLQKKKVLKDK-QVERVVFNAITKKAI 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R++D LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LICDR
Sbjct: 121 LEAMDNPRQLDTPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
EMEI+ FKPQEYW++ A + ++ + D F A +T F K++ +L I + EA I+
Sbjct: 181 EMEIETFKPQEYWSIFANM---KTPTGDMFQ--AGVTGFDGKKIGRLDINNEAEAAAIKT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ SA+F+V + + R P+ TSTLQQ+A+ KL FSA+ TM++AQKLYEG+ +
Sbjct: 236 MLESASFKVDSVASKPAKRNPAAPFTTSTLQQEASRKLGFSASRTMQVAQKLYEGIAI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G +GLITYMRTDG+ I+ EA + RS+I + +G + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETSGLITYMRTDGVQIAGEAIEAARSVIAKDFGDKYVPEK-PRVYTSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD+ R P ++ LD D KLY LIW RTMA QM+ A + + ++I + + R
Sbjct: 354 RPTDLSRHPKDVARFLDPDQAKLYELIWKRTMASQMESAVLERTTIEILADGSGKRANLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV------ 822
++ S V F GF A Y++ R E +EN + L ++ G L +
Sbjct: 414 ATGSVVRFDGFLALYQEG-----RDDEEDENSKR-----LPAVDEGAALTAASIDGTAKA 463
Query: 823 -ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRG 881
E QH T PP RY+E SLVKK+EELGIGRPSTYASTL+ L+DR+YV + + L P +G
Sbjct: 464 IEASQHFTTPPPRYTEASLVKKMEELGIGRPSTYASTLQTLRDRDYVELDKKQLVPMDKG 523
Query: 882 RMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI 941
R+V+AFL +F ++ FTA +E +LD +SAG W +L D+W+ FS + L +
Sbjct: 524 RIVTAFLESFFHRYVEFDFTASLEEQLDKISAGELSWLDVLRDFWTGFSGAVDEIKDLRV 583
Query: 942 HQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
V L + G +F P +D R CP C G L KVSR+GA FIGC+ +P C
Sbjct: 584 AHVIDALNELLGPHIFP--PKEDGSDPRKCPSCDSGQLSLKVSRWGA--FIGCSNYPECG 639
Query: 998 YIAK--TLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGY 1055
+ + G+D E D D PK++G P + V L+ G +G YVQLGE+
Sbjct: 640 FTRQLGKPSGEDGEGD--------DGPKVLGTDPETGLDVSLRKGRFGPYVQLGEEAK-- 689
Query: 1056 LPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIAS 1115
PKRAS+ + LE AL+LL P +G HP+DG+ I + R G V H T A+
Sbjct: 690 -PKRASLPRGWSAPDMDLEKALQLLSLPREVGPHPEDGKMITAGIGRYGPFVLHEGTYAN 748
Query: 1116 VPKNMKPNDVTLEKALEFLS 1135
+ + V + +A++ L+
Sbjct: 749 LSTADEVFSVGINRAVDALA 768
>gi|304391600|ref|ZP_07373542.1| DNA topoisomerase I [Ahrensia sp. R2A130]
gi|303295829|gb|EFL90187.1| DNA topoisomerase I [Ahrensia sp. R2A130]
Length = 886
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 353/800 (44%), Positives = 488/800 (61%), Gaps = 39/800 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG Y+VL SYGHVRDL A+ GSV PDDDFSM W V + A L
Sbjct: 3 LVIVESPAKAKTINKYLGSDYKVLASYGHVRDLPAKDGSVLPDDDFSMSWTVDARAKPRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A A+ LILA+DPDREGEAI+WH++++L+ + L +++ V RVVF+ IT+ SI
Sbjct: 63 TDITKAARAADRLILATDPDREGEAISWHVLQVLRDKKIL-KDMPVERVVFNAITKKSIL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ REID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS +L L+C+RE
Sbjct: 122 EAMEQPREIDEPLVNAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVSLRLVCERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKPQEYWT+ D A LT F + +L + + EA I++
Sbjct: 182 NEIEVFKPQEYWTITGEFKNPAGSDFD-----ARLTEFDGVKKTRLDVKTEDEASAIKRM 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ +A+F+V K + R P+ TSTLQQ+A++KL F A+ TM++AQKLYEGV L G
Sbjct: 237 LMTADFKVGKVEAKPTTRNPYAPFTTSTLQQEASSKLGFGASRTMQVAQKLYEGVDLGSG 296
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ ++ EA E R +I +G + PE+ R Y K KNAQEAHEA+R
Sbjct: 297 TE-GLITYMRTDGVQMAPEAIDEARKVIGADFGKMYLPEKA-RFYSSKAKNAQEAHEAVR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVD-IGNAD-ESIVFRS 769
PT + R P ++ LD+D KLY LIW R++A QM A + + D + D ++ R+
Sbjct: 355 PTSLSRNPKDIASHLDDDQRKLYDLIWKRSIASQMASAKIERTAADLVATKDGQTATMRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S V+F GF + Y D + K +EE+ R L L G+ + + QH T
Sbjct: 415 NGSVVKFDGFLSVYSDS-----KKKADEEDKR------LVPLNEGEVISREAITADQHFT 463
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP+RYSE SL+KK+EELGIGRPSTYASTLK L+DR Y+T++ R L P+ +GR+V++FL
Sbjct: 464 EPPSRYSEASLIKKMEELGIGRPSTYASTLKTLEDREYITIEQRRLTPQAKGRVVTSFLE 523
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F+ +Y FTA +E +LD +SAG EWK +L D+W FS+ + L I +V L
Sbjct: 524 SFFNRYVEYDFTASLEEKLDKISAGEMEWKDVLRDFWKDFSAAIGDTKELRITEVLDKLN 583
Query: 950 KTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
+ G F P K+ R CP C EG L KV +FGA FIGC+ +P C + + L
Sbjct: 584 EELGPLAF---PEKEDGSDPRLCPTCNEGQLSLKVGKFGA--FIGCSNYPECKF-TRQLG 637
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSH 1064
+ E+ N D PK++G P + E+V L G +G YVQ GE + G K + + +
Sbjct: 638 AEGLEQSEQMAN---DGPKVLGVDPNTSEEVKLMVGRFGPYVQRGEGKEG---KNSGIPN 691
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
+ + E A+ LL P +G HP+DG+ I+ R AR G V+H + + +
Sbjct: 692 SWNAAEVDFEKAMMLLDLPRTIGQHPEDGKDIIARFARYGPVVQHGSKYGGLESDDEVFT 751
Query: 1125 VTLEKALEFLSGKDVRRCGR 1144
V + +A+ L+ +R GR
Sbjct: 752 VGINRAVAALA-DGAKRGGR 770
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 21/138 (15%)
Query: 1019 VDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALE 1078
+D P+ IG HP + ++ + YG VQ G K + +V ++ + A+
Sbjct: 707 LDLPRTIGQHPEDGKDIIARFARYGPVVQHGS-------KYGGLESDDEVFTVGINRAVA 759
Query: 1079 LLRYPV-------------NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
L LG HP+ G P+ ++ R G V H + A+VPK+++P V
Sbjct: 760 ALADGAKRGGRGTAAAALKELGEHPEFGGPMSVKNGRFGPYVNHGKINATVPKSIEPTAV 819
Query: 1126 TLEKALEFLSGKDVRRCG 1143
T+E+A++ L+ + V + G
Sbjct: 820 TVEQAVQLLADR-VEKLG 836
>gi|402849338|ref|ZP_10897575.1| DNA topoisomerase I [Rhodovulum sp. PH10]
gi|402500388|gb|EJW12063.1| DNA topoisomerase I [Rhodovulum sp. PH10]
Length = 925
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 352/795 (44%), Positives = 480/795 (60%), Gaps = 38/795 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG YEVL S+GHVRDL + GSV P+ DF MVWEV A
Sbjct: 2 NVVVVESPAKAKTINKYLGHGYEVLASFGHVRDLPPKDGSVDPEADFRMVWEVEGKAQKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ I A++ A+ LILA+DPDREGEAI+WH++E L+++ AL + + RVVF+ IT+ ++
Sbjct: 62 IADIARAVAKADKLILATDPDREGEAISWHLLEALREKRALSPDKRIERVVFNAITKQAV 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 122 TEAMKNPRVIDQALVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F QEYW++ A L +F A L K++ +L IGS EA +Q
Sbjct: 182 ELEIEKFVTQEYWSLVATLATPRHD-----NFQARLVGADGKKITRLDIGSGAEADAFKQ 236
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +A + V R R P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEG+ +
Sbjct: 237 ALEAARYSVANVEARPTRRNPQPPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDI-G 295
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA IRS++ YG + P PR Y K KNAQEAHEAI
Sbjct: 296 GETVGLITYMRTDGVQMAPEAISAIRSVVRADYGDRYLPSS-PRHYQTKAKNAQEAHEAI 354
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI-GNA-DESIVFR 768
RPT++ R P + L+ D KLY LI+ R +A QM+ A + + VDI NA ++ R
Sbjct: 355 RPTEMTRRPRDIVKKLEPDQAKLYELIYVRAVASQMESAELERTTVDITANAGGRTLDLR 414
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S + F GF A Y++ G E+EE+ R L + TG+PL +++ QH
Sbjct: 415 ATGSVITFDGFLALYQE---GQDEAAEDEESRR------LPQMSTGEPLTKQSLDVTQHF 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SLVK++EELGIGRPSTYAS L+VL+DRNYV ++ R L PE RGR+V AFL
Sbjct: 466 TEPPPRYSEASLVKRMEELGIGRPSTYASILQVLKDRNYVRLEKRRLIPEDRGRIVVAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F+ +Y FTAD+E +LD VS EW L+ +W F+ + L I V L
Sbjct: 526 ESFFARYVEYDFTADLEEQLDRVSNNEMEWHELMRRFWHGFAGAVEEIKDLKISDVIDAL 585
Query: 949 EKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ LF + + R C CG G L K+ R+GA FIGC+ +P C Y G
Sbjct: 586 DAMLAPHLFPAREDGTDPRVCTTCGTGRLSLKLGRYGA--FIGCSNYPECRYTRPFSLGA 643
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
D + E K++G P + V LK+G +G Y+QLGE PKRA +
Sbjct: 644 DGGAEV--------EDKVLGQDPETGLDVTLKNGRFGPYLQLGEANGSDKPKRAGLPKGT 695
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND-- 1124
D ++ L+ AL LL P +G HP+DG+PI+ + R G V+H +T A N++P D
Sbjct: 696 DPSTVDLDMALGLLSLPREVGKHPEDGEPIVAGIGRFGAYVQHGKTYA----NLEPGDEV 751
Query: 1125 --VTLEKALEFLSGK 1137
+ L +A+ L+ K
Sbjct: 752 LAIGLNRAVTLLAEK 766
>gi|222475079|ref|YP_002563494.1| DNA topoisomerase I [Anaplasma marginale str. Florida]
gi|222419215|gb|ACM49238.1| DNA topoisomerase I (topA) [Anaplasma marginale str. Florida]
Length = 813
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 344/787 (43%), Positives = 491/787 (62%), Gaps = 39/787 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VV+VES +KAK I YLG Y+V+ S+GHVRD A+SGSV PDDDF M++E+ + ++
Sbjct: 4 VVIVESPSKAKTISKYLGGKYKVVASFGHVRDFPAKSGSVDPDDDFRMIYEIIPKSEKYI 63
Query: 412 -KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
K +K S + LA+DPDREGEAIAWHIVE+L+++ A+ E++ V R+VF+E+T+ ++
Sbjct: 64 DKIVKTVSSEKSGIYLATDPDREGEAIAWHIVEVLRERSAIGEDVAVNRMVFNEVTKRAV 123
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R I+ +LV A ARR LDYL+GF +SPLLWRKLPG +SAGRVQS AL LIC+R
Sbjct: 124 NAAINDCRSINMDLVHAQQARRVLDYLVGFTLSPLLWRKLPGSKSAGRVQSVALRLICER 183
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI++F +EYW +E +L L A L H+ ++L++ +I A I +
Sbjct: 184 EHEIEQFDSKEYWDIEVLLKNNSGEKL-----TATLKHYNGEKLDKFAIPDADSANAIAE 238
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ + + V + R P+ITS+LQQ+A+ KL FSA TM +AQKLYEGV +
Sbjct: 239 HVRNGTYHVASVEAKQTKRNPYPPFITSSLQQEASTKLGFSAKNTMMVAQKLYEGVDI-G 297
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG +IS EA IR I ++G + + PR+Y KKVKNAQEAHEAI
Sbjct: 298 GETVGLITYMRTDGFYISTEAISYIRDTIKMQFGDKYLTKS-PRQYVKKVKNAQEAHEAI 356
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTDI P L+ L +D LKLY LIW RTMA QM+ A + Q+ VDI + D S+V +
Sbjct: 357 RPTDITMTPDSLAKYLSDDQLKLYDLIWRRTMASQMESAVIDQVIVDIQSKDGSVVLHAV 416
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F G+Q Y +++D+ + +L LK G+ L EV QH TQ
Sbjct: 417 GSSLGFDGYQKVY-----------GTDDDDKRK---MLPQLKVGEACNLVEVSPNQHFTQ 462
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKK+EE+GIGRPSTYA+ + VLQ+R Y ++ + P RGR+V+AFL++
Sbjct: 463 PPPRYSEASLVKKMEEIGIGRPSTYAAIISVLQERGYTQLEQKKFVPSERGRIVNAFLTN 522
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+FS +Y FTA++E ELD +S G WK +L +W +F S + + + + ++ K + K
Sbjct: 523 FFSRYVEYDFTANLEEELDLISNGNMAWKEVLRRFWHKFISDVSTVKGIEVSEILKSITK 582
Query: 951 TFGDSLFASLPNK--DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
F+S + DRSCP CGEG L+ + ++ A F+GCN++P C Y + + G
Sbjct: 583 DLEGYAFSSSSGEVVDRSCPGCGEGELMLNIGKYKA--FLGCNRYPECKY-TRGIGG--- 636
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDV 1068
E + R+ + PK++G A++E+++LK+GPYG Y+QLG++ G KR +V + +
Sbjct: 637 -ESGVCRD---EFPKVLGLDDATQEEIVLKNGPYGEYLQLGDNAQG---KRVAVP--QGI 687
Query: 1069 DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
ITL+ A +LL P+ LGN+P Q I L R G V + T SV ++TLE
Sbjct: 688 QEITLDVAKKLLSLPIVLGNYPDTAQDIKLGTGRFGPYVLYGGTYFSVKGREDFWNLTLE 747
Query: 1129 KALEFLS 1135
+A++ ++
Sbjct: 748 EAVDVIN 754
>gi|427426629|ref|ZP_18916675.1| DNA topoisomerase I [Caenispirillum salinarum AK4]
gi|425883993|gb|EKV32667.1| DNA topoisomerase I [Caenispirillum salinarum AK4]
Length = 908
Score = 637 bits (1644), Expect = e-179, Method: Compositional matrix adjust.
Identities = 350/804 (43%), Positives = 490/804 (60%), Gaps = 35/804 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG ++VL SYGH+RDL A+ GSVRPD+DF+M W V + H+
Sbjct: 3 LVIVESPAKAKTINKYLGSDFQVLASYGHIRDLPAKDGSVRPDEDFAMDWTVDGKSERHI 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K I A A+ + LA+DPDREGEAI+WH++E L+++ L ++ V RV F+ IT++++
Sbjct: 63 KEIVSAARTADTVFLATDPDREGEAISWHVLEELRRRRVL-KDTDVKRVTFNAITKSAVM 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D L++AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+C+RE
Sbjct: 122 DAIANPRDLDQELIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLVCERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F PQEYWTV+ L K+ F LTH ++L++ + A +
Sbjct: 182 AEIERFVPQEYWTVDVALKNKDGQP-----FSGRLTHLDGQKLDKFGLKDEASASAAKAA 236
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I + F+V + +R R+NP P + TSTLQQ+A+ KL+FSA TM+ AQ+LYEGV +
Sbjct: 237 IEAGAFKVAQ-VERKQSRRNPAPPFTTSTLQQEASRKLHFSAKQTMQTAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA + R I +G + P + R+Y K KNAQEAHEAI
Sbjct: 295 GETVGLITYMRTDGVQMAPEAIESARGYIGREFGKDYLPGKA-REYKTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT+I R P+ ++ LD D +LY LIW RT+A QM+ A + Q+ VD+ + R++
Sbjct: 354 RPTEIMRHPSTVARSLDRDQFRLYELIWKRTVASQMESAVMDQVAVDMTDGSGKTTLRAN 413
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF Y + + + IL L DP+ G+V +QH TQ
Sbjct: 414 GSVIRFDGFLKLYREDRDDDAEDESSR---------ILPPLNENDPVERGKVTPEQHFTQ 464
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E SLVKK+EELGIGRPSTYAS L VLQDRNYV ++ R PE RGR+V+AFL
Sbjct: 465 PPPRYTEASLVKKMEELGIGRPSTYASVLAVLQDRNYVKLEQRRFVPEDRGRVVTAFLES 524
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F+ Y+FTAD+E +LD++S G +WK +L +W F + Q L + V L+K
Sbjct: 525 FFNRYVQYNFTADLENQLDDISGGRADWKEVLRLFWQDFKAAVEDIQGLRVSDVLDALDK 584
Query: 951 TFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY---IAKTLYG 1005
G LF S + R CP C +G L K+ +FGA FIGC+ +P C Y +A++ G
Sbjct: 585 DLGPHLFPSREDGTDPRVCPSCSDGRLSLKLGKFGA--FIGCSNYPECRYTRPLAESA-G 641
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQL----GEDRTGYLPKRAS 1061
D EE + + PKL+G P + + V L+ GPYG YVQL GE + PKRAS
Sbjct: 642 DPKEE----QAGLAEGPKLLGQDPETGKDVTLRKGPYGVYVQLGEPEGEGKQKTKPKRAS 697
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ D + LE AL+LL P +G HP+ G+PI+ + R G ++H S+ K+
Sbjct: 698 LPRGMDPADVDLEKALKLLALPRKVGPHPETGEPILAGIGRFGPYLKHGDAYKSIGKDDD 757
Query: 1122 PNDVTLEKALEFLSGKDVRRCGRP 1145
++ L +A+ L+ R+ +P
Sbjct: 758 VLEIGLNRAVVLLAEAKTRKTAKP 781
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 16/125 (12%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ +G HP + E +L G +G Y++ G+ S+ DV I L A+ LL
Sbjct: 719 PRKVGPHPETGEPILAGIGRFGPYLKHGD-------AYKSIGKDDDVLEIGLNRAVVLLA 771
Query: 1082 --------YPV-NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALE 1132
P+ LG HP D I L R G V+H +T A++PK+ P VTL++A+E
Sbjct: 772 EAKTRKTAKPLKTLGKHPDDSVEITLHEGRYGPYVQHNKTRATLPKDKDPETVTLDEAVE 831
Query: 1133 FLSGK 1137
++ K
Sbjct: 832 LINAK 836
>gi|56416713|ref|YP_153787.1| DNA topoisomerase [Anaplasma marginale str. St. Maries]
gi|254994921|ref|ZP_05277111.1| DNA topoisomerase [Anaplasma marginale str. Mississippi]
gi|255003057|ref|ZP_05278021.1| DNA topoisomerase [Anaplasma marginale str. Puerto Rico]
gi|255004180|ref|ZP_05278981.1| DNA topoisomerase [Anaplasma marginale str. Virginia]
gi|56387945|gb|AAV86532.1| DNA topoisomerase [Anaplasma marginale str. St. Maries]
Length = 812
Score = 637 bits (1643), Expect = e-179, Method: Compositional matrix adjust.
Identities = 344/787 (43%), Positives = 491/787 (62%), Gaps = 39/787 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VV+VES +KAK I YLG Y+V+ S+GHVRD A+SGSV PDDDF M++E+ + ++
Sbjct: 3 VVIVESPSKAKTISKYLGGKYKVVASFGHVRDFPAKSGSVDPDDDFRMIYEIIPKSEKYI 62
Query: 412 -KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
K +K S + LA+DPDREGEAIAWHIVE+L+++ A+ E++ V R+VF+E+T+ ++
Sbjct: 63 DKIVKTVSSEKSGIYLATDPDREGEAIAWHIVEVLRERSAIGEDVAVNRMVFNEVTKRAV 122
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R I+ +LV A ARR LDYL+GF +SPLLWRKLPG +SAGRVQS AL LIC+R
Sbjct: 123 NAAINDCRSINMDLVHAQQARRVLDYLVGFTLSPLLWRKLPGSKSAGRVQSVALRLICER 182
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI++F +EYW +E +L L A L H+ ++L++ +I A I +
Sbjct: 183 EHEIEQFDSKEYWDIEVLLKNNSGEKL-----TATLKHYNGEKLDKFAIPDADSANAIAE 237
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ + + V + R P+ITS+LQQ+A+ KL FSA TM +AQKLYEGV +
Sbjct: 238 HVRNGTYHVASVEAKQTKRNPYPPFITSSLQQEASTKLGFSAKNTMMVAQKLYEGVDI-G 296
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG +IS EA IR I ++G + + PR+Y KKVKNAQEAHEAI
Sbjct: 297 GETVGLITYMRTDGFYISTEAISYIRDTIKMQFGDKYLTKS-PRQYVKKVKNAQEAHEAI 355
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTDI P L+ L +D LKLY LIW RTMA QM+ A + Q+ VDI + D S+V +
Sbjct: 356 RPTDITMTPDSLAKYLSDDQLKLYDLIWRRTMASQMESAVIDQVIVDIQSKDGSVVLHAV 415
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F G+Q Y +++D+ + +L LK G+ L EV QH TQ
Sbjct: 416 GSSLGFDGYQKVY-----------GTDDDDKRK---MLPQLKVGEACNLVEVSPNQHFTQ 461
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKK+EE+GIGRPSTYA+ + VLQ+R Y ++ + P RGR+V+AFL++
Sbjct: 462 PPPRYSEASLVKKMEEIGIGRPSTYAAIISVLQERGYTQLEQKKFVPSERGRIVNAFLTN 521
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+FS +Y FTA++E ELD +S G WK +L +W +F S + + + + ++ K + K
Sbjct: 522 FFSRYVEYDFTANLEEELDLISNGNMAWKEVLRRFWHKFISDVSTVKGIEVSEILKSITK 581
Query: 951 TFGDSLFASLPNK--DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
F+S + DRSCP CGEG L+ + ++ A F+GCN++P C Y + + G
Sbjct: 582 DLEGYAFSSSSGEVVDRSCPGCGEGELMLNIGKYKA--FLGCNRYPECKY-TRGIGG--- 635
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDV 1068
E + R+ + PK++G A++E+++LK+GPYG Y+QLG++ G KR +V + +
Sbjct: 636 -ESGVCRD---EFPKVLGLDDATQEEIVLKNGPYGEYLQLGDNAQG---KRVAVP--QGI 686
Query: 1069 DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
ITL+ A +LL P+ LGN+P Q I L R G V + T SV ++TLE
Sbjct: 687 QEITLDVAKKLLSLPIVLGNYPDTAQDIKLGTGRFGPYVLYGGTYFSVKGREDFWNLTLE 746
Query: 1129 KALEFLS 1135
+A++ ++
Sbjct: 747 EAVDVIN 753
>gi|407783669|ref|ZP_11130866.1| DNA topoisomerase I subunit omega [Oceanibaculum indicum P24]
gi|407200553|gb|EKE70560.1| DNA topoisomerase I subunit omega [Oceanibaculum indicum P24]
Length = 903
Score = 637 bits (1642), Expect = e-179, Method: Compositional matrix adjust.
Identities = 352/795 (44%), Positives = 476/795 (59%), Gaps = 32/795 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+VL S+GH+RDL + GSV P+ DF M+WEV + H
Sbjct: 2 NLVIVESPAKAKTINKYLGGDYKVLASFGHIRDLPPKDGSVDPERDFQMIWEVDGRSEKH 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I + GA+ + LA+DPDREGEAI+WH+ E+L+Q+ AL + + V RV F+EIT+ ++
Sbjct: 62 VKEILKEVKGADRVFLATDPDREGEAISWHVKEVLEQRKAL-KGVEVKRVTFNEITKNAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ RE++ +V AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+R
Sbjct: 121 LEAMANPRELNREMVDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICER 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+PQEYW+V A + K F A LT K+L ++ + A
Sbjct: 181 EAEIEIFRPQEYWSVAAEMTTKAGDR-----FTASLTQLDGKKLGKMELKDQAAAARAVA 235
Query: 591 KI--NSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
I + V + K+++ R P+ TSTLQQ+A+ KL FSA+ TM++AQ+LYEGV +
Sbjct: 236 AIEAGQGRYAVAELEKKTVKRHPQPPFTTSTLQQEASRKLGFSASRTMQVAQRLYEGVDI 295
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G GLITYMRTDG+ IS EA RSLI YG + PE PR Y K KNAQEAHE
Sbjct: 296 -GGETVGLITYMRTDGVQISREAVGAARSLIGRDYGDKYVPEV-PRAYSTKAKNAQEAHE 353
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
A+RPTD+ R P ++ L+ D LKLY LIW RT+A QM+ A + Q DI D + R
Sbjct: 354 AVRPTDLFRRPKDVARTLEGDQLKLYELIWKRTVASQMESALLDQTAADITTPDGKVTLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S V F GF Y++ E E+D +L + GD + LG V QH
Sbjct: 414 ATGSIVAFDGFLTLYQE------SRDEPAEDDESR---LLPPMAKGDAMGLGTVTPSQHF 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RYSE SLVKKLEELGIGRPSTYAS L+VLQDR+YV + R PE RGRMV+AFL
Sbjct: 465 TQPPPRYSEASLVKKLEELGIGRPSTYASILQVLQDRDYVRLDKRRFVPEDRGRMVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
S++F Y+FTA++E +LD++S G ++K +L D+W+ F S + L I QV L
Sbjct: 525 SNFFERYVQYNFTAELENQLDDISGGRIDYKQVLRDFWNHFHSAIDGTRELTITQVLDAL 584
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK-TL 1003
+ G F N D R+CP CG G L K+ R G FIGC+ +P C Y +
Sbjct: 585 DADLGPHFFPD--NGDGKNPRACPTCGTGRLGLKLGRNGG--FIGCSNYPECRYTRPLAV 640
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTG-YLPKRASV 1062
GD D + + E +G P + V ++ GPYG+Y+QLGE + PKR S+
Sbjct: 641 PGDGDGAEGGLPDGGTRE---LGSEPGTGLPVTVRKGPYGYYIQLGEAVSKEEKPKRVSL 697
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
I L+ AL LL P +G P+ G+ I + R G V+ T ++PK+
Sbjct: 698 PKGVSPADIDLQRALSLLSLPREIGADPESGEAISAGIGRFGPYVKRGSTYVNIPKDEDV 757
Query: 1123 NDVTLEKALEFLSGK 1137
+ + +A++ L+ K
Sbjct: 758 LTIGMNRAMDLLATK 772
>gi|240140058|ref|YP_002964535.1| DNA topoisomerase I [Methylobacterium extorquens AM1]
gi|418059375|ref|ZP_12697325.1| DNA topoisomerase I [Methylobacterium extorquens DSM 13060]
gi|240010032|gb|ACS41258.1| DNA topoisomerase I [Methylobacterium extorquens AM1]
gi|373567047|gb|EHP93026.1| DNA topoisomerase I [Methylobacterium extorquens DSM 13060]
Length = 910
Score = 637 bits (1642), Expect = e-179, Method: Compositional matrix adjust.
Identities = 344/809 (42%), Positives = 487/809 (60%), Gaps = 29/809 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG YEVL S+GH+RDL A+ GSV P+ DF+M+WEV +
Sbjct: 3 VVVVESPAKAKTINKYLGRDYEVLASFGHIRDLPAKDGSVDPEADFAMIWEVEDRGAKRV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ GAE LILA+DPDREGEAI+WH++E L + AL + I V RV F+ IT+AS+
Sbjct: 63 SEIARAVKGAEKLILATDPDREGEAISWHVIEALTARKAL-KGIPVERVTFNAITKASVD 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+ +RE
Sbjct: 122 AAMKKPRQIDQALVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVVERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ FKP+EYW++ A L + F A L KR+ +L +G+ EA ++
Sbjct: 182 MEIERFKPREYWSIIATLVTEAGGV-----FEARLVGADGKRIQRLDVGNAEEAAAFKRD 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A FQV + R P+ TSTLQQ+A+ KL + TM++AQ+LYEGV + G
Sbjct: 237 LELATFQVASIEAKPAKRHPQPPFTTSTLQQEASRKLGMAPAQTMRVAQRLYEGVDV-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G+ITYMRTDG+ ++ EA ++ R +I +G + P PRKY K KNAQEAHEA+R
Sbjct: 296 ETVGIITYMRTDGVDMAPEAIQDARQVIGREFGDAYVPS-APRKYTVKAKNAQEAHEAVR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFRS 769
PTD+ RLP ++ L+ + KLY LIW+RT+A QM+ A + + V++ I R+
Sbjct: 355 PTDMGRLPKHVARHLEPEQAKLYDLIWTRTIASQMESAELERTTVEVSANVGPRRIDLRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ V+F GF A Y+ E ++++ E L ++K GD L + QH T
Sbjct: 415 TGQVVKFDGFLALYQ----------EGKDDEEDEDAKRLPAMKAGDALKRERIASTQHFT 464
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE SLVK++EELGIGRPSTYA+ L+ L+DR YV ++ + L PE +GR+V+ FL
Sbjct: 465 EPPPRYSEASLVKRMEELGIGRPSTYAAVLQTLRDREYVRIEKKRLQPEDKGRLVTGFLE 524
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F +Y FTA +E +LD VS +W+ +L D+W FS+ + L + +V + L
Sbjct: 525 SFFKRYVEYDFTASLEEQLDRVSNAEIDWRSVLRDFWRDFSAAIGGTKELRVAEVLEALN 584
Query: 950 KTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK-TLYGD 1006
G +F + R+CP CG G L K+ +FGA FIGC+ +P C Y + + G
Sbjct: 585 GLLGPHIFPEKADGGDPRACPTCGAGQLSLKLGKFGA--FIGCSNYPECKYTRQLSASGV 642
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE---DRTGYLPKRASVS 1063
+ E D +++G PA+ V L+ G +G +VQLGE ++ PKR+S+
Sbjct: 643 EGEGDGSSAEGGQPGVRVLGDDPATGLPVTLRDGRFGPFVQLGEASAEKGAEKPKRSSLP 702
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
S+TLE AL LL P + HP+ G+PI+ L R G V+H +T A++ K+
Sbjct: 703 KGTTPGSVTLEIALRLLSLPREVAKHPETGEPILANLGRFGPYVQHGKTYANLGKDDDVL 762
Query: 1124 DVTLEKALEFLSGKDVRRC-GRPKGKPKR 1151
++ +A++ + K+ GRP P R
Sbjct: 763 EIGANRAIDLIVAKEQGGGRGRPSSDPGR 791
Score = 45.1 bits (105), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 25/150 (16%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ + HP + E +L G +G YVQ G+ A++ DV I A++L+
Sbjct: 722 PREVAKHPETGEPILANLGRFGPYVQHGK-------TYANLGKDDDVLEIGANRAIDLIV 774
Query: 1082 YPV--------------NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
LG HP DG ++++ + G V A++PK M +TL
Sbjct: 775 AKEQGGGRGRPSSDPGRTLGQHP-DGAALVVKAGKYGPYVSDGSVNATLPKTMAAESLTL 833
Query: 1128 EKALEFLSGKDVRRCGRPKGKPKREEALEA 1157
E+A++ ++ K G+ KP R+ A A
Sbjct: 834 EQAIDLVNAKRASGGGK---KPVRKTASRA 860
>gi|192291905|ref|YP_001992510.1| DNA topoisomerase I [Rhodopseudomonas palustris TIE-1]
gi|192285654|gb|ACF02035.1| DNA topoisomerase I [Rhodopseudomonas palustris TIE-1]
Length = 911
Score = 637 bits (1642), Expect = e-179, Method: Compositional matrix adjust.
Identities = 343/795 (43%), Positives = 487/795 (61%), Gaps = 39/795 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL S+GHVRDL A++GSV PD DF M+WEV A +
Sbjct: 2 NLVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDADFQMIWEVDPKAASR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL GA+ LILA+DPDREGEAI+WH++E+++Q+ AL + V RVVF+ IT+ S+
Sbjct: 62 LNDIAKALKGADKLILATDPDREGEAISWHVLEVMKQKRALKDQ-QVERVVFNAITKQSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 TDAMKHPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI++F P+EYW++ A + + F A L K++ +L IG+ EA+D ++
Sbjct: 181 ETEIEKFVPREYWSLVATMATPRGET-----FEARLVGADGKKIQRLDIGTGAEAEDFKK 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I +ANF+V + R+NP P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEGV +
Sbjct: 236 AIEAANFRVATVEAKP-ARRNPYAPFTTSTLQQEASRKLGFAPAHTMRVAQRLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ I A + R +I E +G+ + P+ PR+Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQIDSSAITQARKVIAEDFGNAYVPD-APRQYTAKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF-- 767
IRPTD+ R P+ +S LD D +LY LIW RT+A QM+ A + + VDI S V
Sbjct: 353 IRPTDLSRRPSDVSRNLDSDQARLYELIWIRTVASQMESAELERTTVDIEAKAGSRVLEL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ V+F GF AAY++ +++ E L ++ + L + + QH
Sbjct: 413 RATGQVVKFDGFLAAYQE---------GRDDDSEDEDSRRLPAMSENEALKREALAVTQH 463
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP R+SE SLVK++EELGIGRPSTYAS L+VL+DR YV ++ + L+ E +GR+V AF
Sbjct: 464 FTEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVRLEKKRLHGEDKGRVVVAF 523
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F+ +Y FTA +E +LD +S WK +L D+W F + L + QV +
Sbjct: 524 LESFFTRYVEYDFTAGLEEDLDRISNNEVSWKQVLSDFWRDFIGAVDEIKDLRVAQVLDV 583
Query: 948 LEKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L++ G ++ + + R CP CG G L K +FGA F+GC +P C Y
Sbjct: 584 LDEMLGPHIYPAREDGGDPRQCPSCGNGRLNLKAGKFGA--FVGCTNYPECRYTR----- 636
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRASV 1062
L + D +++G P + +V +KSG +G Y+QLGE + G PKRA +
Sbjct: 637 ------PLAADGGADADRVLGTDPDTGLEVAVKSGRFGPYIQLGEAKDYGEGEKPKRAGI 690
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+ L+ AL+LL P +G HP+ GQPI + R G V+H +T AS+
Sbjct: 691 PKGTSPSDVELDVALKLLALPREVGKHPESGQPIKAGIGRFGPYVQHEKTYASLEAGDDV 750
Query: 1123 NDVTLEKALEFLSGK 1137
+ + L +A+ ++ K
Sbjct: 751 HTIGLNRAVTLIAEK 765
>gi|163852723|ref|YP_001640766.1| DNA topoisomerase I [Methylobacterium extorquens PA1]
gi|163664328|gb|ABY31695.1| DNA topoisomerase I [Methylobacterium extorquens PA1]
Length = 910
Score = 636 bits (1641), Expect = e-179, Method: Compositional matrix adjust.
Identities = 344/809 (42%), Positives = 487/809 (60%), Gaps = 29/809 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG YEVL S+GH+RDL A+ GSV P+ DF+M+WEV +
Sbjct: 3 VVVVESPAKAKTINKYLGRDYEVLASFGHIRDLPAKDGSVDPEADFAMIWEVEDRGAKRV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ GAE LILA+DPDREGEAI+WH++E L + AL + I V RV F+ IT+AS+
Sbjct: 63 SEIARAVKGAEKLILATDPDREGEAISWHVIEALTARKAL-KGIPVERVTFNAITKASVD 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+ +RE
Sbjct: 122 AAMKKPRQIDQALVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVVERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ FKP+EYW++ A L + F A L KR+ +L +G+ EA ++
Sbjct: 182 MEIERFKPREYWSIIATLVTEAGGV-----FEARLVGADGKRIQRLDVGNAEEAAAFKRD 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A FQV + R P+ TSTLQQ+A+ KL + TM++AQ+LYEGV + G
Sbjct: 237 LELATFQVASIEAKPAKRHPQPPFTTSTLQQEASRKLGMAPAQTMRVAQRLYEGVDV-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G+ITYMRTDG+ ++ EA ++ R +I +G + P PRKY K KNAQEAHEA+R
Sbjct: 296 ETVGIITYMRTDGVDMAPEAIQDARQVIGREFGDAYVPG-APRKYTVKAKNAQEAHEAVR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFRS 769
PTD+ RLP ++ L+ + KLY LIW+RT+A QM+ A + + V++ I R+
Sbjct: 355 PTDMGRLPKHVARHLEPEQAKLYDLIWTRTIASQMESAELERTTVEVSANVGPRRIDLRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ V+F GF A Y+ E ++++ E L ++K GD L + QH T
Sbjct: 415 TGQVVKFDGFLALYQ----------EGKDDEEDEDAKRLPAMKAGDALKRERIASTQHFT 464
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE SLVK++EELGIGRPSTYA+ L+ L+DR YV ++ + L PE +GR+V+ FL
Sbjct: 465 EPPPRYSEASLVKRMEELGIGRPSTYAAVLQTLRDREYVRIEKKRLQPEDKGRLVTGFLE 524
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F +Y FTA +E +LD VS +W+ +L D+W FS+ + L + +V + L
Sbjct: 525 SFFKRYVEYDFTASLEEQLDRVSNAEIDWRSVLRDFWRDFSAAIGGTKELRVAEVLEALN 584
Query: 950 KTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK-TLYGD 1006
G +F + R+CP CG G L K+ +FGA FIGC+ +P C Y + + G
Sbjct: 585 GLLGPHIFPEKADGGDPRACPTCGAGQLSLKLGKFGA--FIGCSNYPECKYTRQLSASGV 642
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE---DRTGYLPKRASVS 1063
+ E D +++G PA+ V L+ G +G +VQLGE ++ PKR+S+
Sbjct: 643 EGEGDGSSAEGGQPGVRVLGEDPATGLPVTLRDGRFGPFVQLGEASAEKGAEKPKRSSLP 702
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
S+TLE AL LL P + HP+ G+PI+ L R G V+H +T A++ K+
Sbjct: 703 KGMTPGSVTLEIALRLLSLPREVAKHPETGEPILANLGRFGPYVQHGKTYANLGKDDDVL 762
Query: 1124 DVTLEKALEFLSGKDVRRC-GRPKGKPKR 1151
++ +A++ + K+ GRP P R
Sbjct: 763 EIGANRAIDLIVAKEQGGGRGRPSSDPGR 791
Score = 45.1 bits (105), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 25/150 (16%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ + HP + E +L G +G YVQ G+ A++ DV I A++L+
Sbjct: 722 PREVAKHPETGEPILANLGRFGPYVQHGK-------TYANLGKDDDVLEIGANRAIDLIV 774
Query: 1082 YPV--------------NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
LG HP DG ++++ + G V A++PK M +TL
Sbjct: 775 AKEQGGGRGRPSSDPGRTLGQHP-DGAALVVKAGKYGPYVSDGSVNATLPKTMAAESLTL 833
Query: 1128 EKALEFLSGKDVRRCGRPKGKPKREEALEA 1157
E+A++ ++ K G+ KP R+ A A
Sbjct: 834 EQAIDLVNAKRASGGGK---KPVRKTASRA 860
>gi|398828269|ref|ZP_10586470.1| DNA topoisomerase I, bacterial [Phyllobacterium sp. YR531]
gi|398218304|gb|EJN04814.1| DNA topoisomerase I, bacterial [Phyllobacterium sp. YR531]
Length = 870
Score = 636 bits (1641), Expect = e-179, Method: Compositional matrix adjust.
Identities = 353/805 (43%), Positives = 480/805 (59%), Gaps = 34/805 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y VL S+GHVRDL A+ GSVRPDDDFSM WEV SA+
Sbjct: 2 NVVVVESPAKAKTINKYLGSGYTVLASFGHVRDLPAKDGSVRPDDDFSMSWEVDSASSKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL ++ LILA+DPDREGEAI+WH++E+LQQ+ A+ + +V RVVF+ IT+ ++
Sbjct: 62 LGDIVKALKDSDGLILATDPDREGEAISWHVLEVLQQKKAIGKK-SVKRVVFNAITKGAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL GF +SP+LWRKLPG +SAGRVQS AL L+ DR
Sbjct: 121 LEAMANPRDIDMPLVDAYLARRALDYLFGFTLSPVLWRKLPGARSAGRVQSVALRLVADR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + F A L K+L +L I + +A +I
Sbjct: 181 EAEIERFVREEYWNIAALLKTPRNDG-----FEARLISVDGKKLGKLDIKNGEQAGEIRS 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A+F+ + + R P+ TS+LQQ A+ +L FSA+ TM++AQKLYEG+ L
Sbjct: 236 MLEGASFKAASVEAKPIKRSPGPPFTTSSLQQAASGQLGFSASRTMQIAQKLYEGMDLGS 295
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
TA GLITYMRTDG+ ++ EA + R I + +G + PE+ PR Y K KNAQEAHEAI
Sbjct: 296 ETA-GLITYMRTDGVQMAPEAVQAARQTIGKVFGDKYVPEK-PRFYSTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LD D KLY LIW R +A QMQ A + + V+I N + R
Sbjct: 354 RPTDFNRHPKDMRKFLDADQAKLYELIWKRAIASQMQSADIERTTVEIEASNGSRAAQLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S V F GF AY D EE D E A L ++ G+ L ++ QH
Sbjct: 414 ATGSVVRFDGFLGAYTD---------HREEEDIDEDGARLPEIRAGEALAREKINATQHS 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYASTL L+DR Y+T++ R L PE +GR+V AFL
Sbjct: 465 TEPPPRYSEATLIKKMEELGIGRPSTYASTLATLRDREYITIEKRKLLPEAKGRLVIAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S G +WK +L +W+ F + L + V L
Sbjct: 525 ESFFQRYVEYDFTADLEEKLDEISDGKLKWKDVLRAFWTDFFGSVDGIKELRVTNVLDAL 584
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
G +F P +D R C VCG G L K+ ++GA F+GC+ +P C + + L
Sbjct: 585 NDRLGPLVFP--PREDGGDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECKF-TRQLG 639
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSH 1064
G E + DEPK++G P + E + +SG +G YVQ GE G KRAS+
Sbjct: 640 G---SEAANENGNGGDEPKVLGKDPYTDEDITARSGRFGPYVQRGE---GKEAKRASLPK 693
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
+D++ E AL LL P ++G HP+ + I + R G + H T A++ +
Sbjct: 694 GWTLDTLDHEKALALLALPRDVGQHPETQKMISAGIGRYGPYLTHDGTYANLENAEEVFT 753
Query: 1125 VTLEKALEFLSGKDVRRCGRPKGKP 1149
+ L +A+ ++ K + GR +G P
Sbjct: 754 IGLNRAVTVIAEKQAKGPGRGRGTP 778
>gi|67458922|ref|YP_246546.1| DNA topoisomerase I [Rickettsia felis URRWXCal2]
gi|75536640|sp|Q4UM42.1|TOP1_RICFE RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase I;
AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName: Full=Untwisting
enzyme
gi|67004455|gb|AAY61381.1| DNA topoisomerase I [Rickettsia felis URRWXCal2]
Length = 776
Score = 636 bits (1641), Expect = e-179, Method: Compositional matrix adjust.
Identities = 334/784 (42%), Positives = 486/784 (61%), Gaps = 23/784 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGEAI+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGEAISWHVAEVIKEKNKVKSDDFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++DANLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDANLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + +AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTHVNDQKLEKFSIINEKDAKDLTEK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S NF V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQNFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKNYGDKYLP-NSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L L++D KLY LIW RT+ACQM+ + + + + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLEKDYYKLYELIWKRTIACQMENVIMDLVVASLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK +PL E+ QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESVDDEAEEENKMLPPLKEQEPLKTKEIIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV+++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVSLEKKRFMPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 526 FKKYVEYDFTAGLENELDEIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF+ NK+ ++CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFSE--NKESKACPSCKTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ +E K++G E + LK GPYG YVQLGE PKR+ V + +
Sbjct: 642 NDGDLAATPNENKVLGTDKDGIE-IYLKKGPYGPYVQLGEQEGKVKPKRSPVPASLNQND 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITLE AL+LL P+ +G H G+ IM+ + G +++ S+PK +++L+ A
Sbjct: 701 ITLEMALKLLSLPLKIGIHKDSGEEIMIGYGKFGPYIKYMGKFISIPKKYDFLNLSLDDA 760
Query: 1131 LEFL 1134
++ +
Sbjct: 761 MKLI 764
>gi|395787762|ref|ZP_10467354.1| DNA topoisomerase I [Bartonella birtlesii LL-WM9]
gi|395410384|gb|EJF76939.1| DNA topoisomerase I [Bartonella birtlesii LL-WM9]
Length = 862
Score = 635 bits (1639), Expect = e-179, Method: Compositional matrix adjust.
Identities = 348/790 (44%), Positives = 486/790 (61%), Gaps = 29/790 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG Y+V+ S+GHVRDL A+ GSV PD DFSM W++ SAA L
Sbjct: 3 IVIVESPAKAKTINKYLGSQYKVVASFGHVRDLPAKDGSVLPDQDFSMKWDIDSAATKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L + V RVVF+ IT+ S+
Sbjct: 63 NEIAKAVKEADSLILATDPDREGEAISWHILDILRQKKVLKDK-PVKRVVFNAITKKSVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDRE
Sbjct: 122 DAMNNPRDIDTSLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F ++YW++ L ++ SF A LT F K++ +L I S +A I
Sbjct: 182 SEIEHFVKEDYWSITTNL-----KTIRNDSFQARLTMFNQKKIGKLDIQSQEQADQIRLI 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A ++++ + R P+ TSTLQQ A++KL FSA+ TM+ AQKLYEG+++ +G
Sbjct: 237 LEEAKYRILSVEAKPTKRNPSPPFTTSTLQQAASSKLGFSASRTMQTAQKLYEGIEI-NG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AGLITYMRTDG+ I+ EA R +I E +GS + PE+ PR Y K KNAQEAHEAIR
Sbjct: 296 EMAGLITYMRTDGVQIAPEAIDSARKVIHESFGSDYVPEK-PRFYSTKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES--IVFRS 769
PTD +R+P+ + LD D KLY LIW R +A QM+ A + + V+I E R+
Sbjct: 355 PTDFQRIPSQVRNFLDGDQAKLYELIWKRAIASQMRSAEIERTTVEIEAQQEKNRANLRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S + F GF + Y D + EEN+ L + +G+ L +VE QH T
Sbjct: 415 TGSVIRFDGFISVYTD--------QREEENNEENETTRLPKVNSGETLTKEKVESIQHTT 466
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE SL+KKLEELGIGRPSTYASTL L DR Y+ + R L P+ +GR+V+AFL
Sbjct: 467 EPPPRYSEASLIKKLEELGIGRPSTYASTLATLCDRGYIVIDKRKLIPDAKGRIVTAFLE 526
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
++F+ +Y FTAD+E +LD +S G WK ++ D+W F++ T + L I V +L
Sbjct: 527 NFFNRYVEYGFTADLEEKLDLISDGKLFWKDVMRDFWDGFNASITNIKELRITNVLDVLN 586
Query: 950 KTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
T F + RSCP+C G L K+ R+GA F+GC+ +P C Y + L D
Sbjct: 587 VTLAPLAFPVREDGSDIRSCPLCTNGRLSLKLGRYGA--FVGCSNYPECKYTHQ-LGTDT 643
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKD 1067
EE+ RN DEP ++G P + +++ L++G +G Y+QLGE + KRA +
Sbjct: 644 GEENEAMRN---DEPVILGVDPKTGKEISLRNGRFGPYIQLGESKE---VKRAGLPKEWQ 697
Query: 1068 VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
+ITL+ AL LL P +G HP+ G+ I + R G + H A + + D+ +
Sbjct: 698 TANITLDKALALLSLPREIGTHPETGKIITATIGRYGPYLSHDSKSAPLLHADEVFDIGI 757
Query: 1128 EKALEFLSGK 1137
+A+ L+ K
Sbjct: 758 NRAVTVLAEK 767
>gi|395765777|ref|ZP_10446368.1| DNA topoisomerase I [Bartonella sp. DB5-6]
gi|395410782|gb|EJF77329.1| DNA topoisomerase I [Bartonella sp. DB5-6]
Length = 862
Score = 635 bits (1639), Expect = e-179, Method: Compositional matrix adjust.
Identities = 347/791 (43%), Positives = 485/791 (61%), Gaps = 29/791 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+V+ S+GHVRDL A+ GSV PD DFSM W++ SA+
Sbjct: 2 NIVIVESPAKAKTINKYLGSQYKVVASFGHVRDLPAKDGSVLPDQDFSMKWDIDSASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L + V RVVF+ IT+ S+
Sbjct: 62 LNEIAKAVKKADSLILATDPDREGEAISWHILDILRQKKVLKDK-PVKRVVFNAITKKSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDR
Sbjct: 121 LDAMSNPRDIDTSLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F ++YW++ L ++ SF A LT F K++ +L I S +A I
Sbjct: 181 ESEIEHFIKEDYWSITTDL-----KTIRNDSFQARLTMFNQKKIGKLDIQSQEQADQIRL 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A + + + R P+ TSTLQQ A++KL SA+ TM++AQKLYEGV++ +
Sbjct: 236 MLEEAKYCTLSVEAKPTKRNPSPPFTTSTLQQAASSKLGLSASRTMQIAQKLYEGVEI-N 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R +I E +GS + PE PR Y K KNAQEAHEAI
Sbjct: 295 GEMAGLITYMRTDGVQIAQEAIDSARKVIHESFGSDYLPE-NPRFYSTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD +R+P + LD D KLY LIW R +A QM+ A + + V+I + R
Sbjct: 354 RPTDFQRIPNKVRNFLDSDQAKLYELIWKRAIASQMRSAEIERTTVEIEAQQGENCANLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S + F GF + Y D + EEN L + TG+ L +VE QH
Sbjct: 414 ATGSVIRFDGFISVYTD--------QREEENSEENEATRLPQINTGETLTKEKVESVQHT 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KKLEELGIGRPSTYASTL L DR Y+ + R L P+ +GR+V+AFL
Sbjct: 466 TEPPPRYSEASLIKKLEELGIGRPSTYASTLSTLCDRGYIVIDKRKLIPDTKGRIVTAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F+ +Y FTAD+E +LD +S G WK ++ D+W F++ T + L I V +L
Sbjct: 526 ENFFNRYVEYGFTADLEEKLDLISDGKLSWKDVMRDFWDGFNASITNIKELRITDVLDVL 585
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
T F + RSCP+C G L K+ R+GA F+GC+ +P C Y + L D
Sbjct: 586 NVTLAPLAFPVREDGSDIRSCPLCPNGQLSLKLGRYGA--FVGCSNYPECKYTHQ-LGTD 642
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
EE+ RN DEP ++G P +++++ L++G +G Y+QLGE++ KRA +
Sbjct: 643 TGEENEAMRN---DEPVILGIDPTTEKEISLRNGRFGPYIQLGENKD---VKRAGLPKEW 696
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
++ITL+ AL LL P +G HP+ G+ I + R G + H A + + D+
Sbjct: 697 QTENITLDKALSLLSLPRKIGTHPETGKIITATIGRYGPYLSHDGKSAPLLYADEVFDIG 756
Query: 1127 LEKALEFLSGK 1137
+ +A+ L+ K
Sbjct: 757 INRAVTVLAEK 767
>gi|254562483|ref|YP_003069578.1| DNA topoisomerase I [Methylobacterium extorquens DM4]
gi|254269761|emb|CAX25733.1| DNA topoisomerase I [Methylobacterium extorquens DM4]
Length = 910
Score = 635 bits (1639), Expect = e-179, Method: Compositional matrix adjust.
Identities = 344/809 (42%), Positives = 487/809 (60%), Gaps = 29/809 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG YEVL S+GH+RDL A+ GSV P+ DF+M+WEV +
Sbjct: 3 VVVVESPAKAKTINKYLGRDYEVLASFGHIRDLPAKDGSVDPEADFAMIWEVEDRGAKRV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ GAE LILA+DPDREGEAI+WH++E L + AL + I V RV F+ IT+AS+
Sbjct: 63 SEIARAVKGAEKLILATDPDREGEAISWHVIEALTARKAL-KGIPVERVTFNAITKASVD 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+ +RE
Sbjct: 122 AAMKKPRQIDQALVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVVERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ FKP+EYW++ A L + F A L KR+ +L +G+ EA ++
Sbjct: 182 MEIERFKPREYWSIIATLVTEAGGV-----FEARLVGADGKRIQRLDVGNAEEAAAFKRD 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A FQV + R P+ TSTLQQ+A+ KL + TM++AQ+LYEGV + G
Sbjct: 237 LELATFQVASIEAKPAKRHPQPPFTTSTLQQEASRKLGMAPAQTMRVAQRLYEGVDV-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G+ITYMRTDG+ ++ EA ++ R +I +G + P PRKY K KNAQEAHEA+R
Sbjct: 296 ETVGIITYMRTDGVDMAPEAIQDARQVIGREFGDAYVPG-APRKYTVKAKNAQEAHEAVR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFRS 769
PTD+ RLP ++ L+ + KLY LIW+RT+A QM+ A + + V++ I R+
Sbjct: 355 PTDMGRLPKHVARHLEPEQAKLYDLIWTRTIASQMESAELERTTVEVSANVGPRRIDLRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ V+F GF A Y+ E ++++ E L ++K GD L + QH T
Sbjct: 415 TGQVVKFDGFLALYQ----------EGKDDEEDEDAKRLPAMKAGDALKRERIASTQHFT 464
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE SLVK++EELGIGRPSTYA+ L+ L+DR YV ++ + L PE +GR+V+ FL
Sbjct: 465 EPPPRYSEASLVKRMEELGIGRPSTYAAVLQTLRDREYVRIEKKRLQPEDKGRLVTGFLE 524
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F +Y FTA +E +LD VS +W+ +L D+W FS+ + L + +V + L
Sbjct: 525 SFFKRYVEYDFTASLEEQLDRVSNAEIDWRSVLRDFWRDFSAAIGGTKELRVAEVLEALN 584
Query: 950 KTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK-TLYGD 1006
G +F + R+CP CG G L K+ +FGA FIGC+ +P C Y + + G
Sbjct: 585 GLLGPHIFPEKADGGDPRACPTCGAGQLSLKLGKFGA--FIGCSNYPECKYTRQLSASGV 642
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE---DRTGYLPKRASVS 1063
+ E D +++G PA+ V L+ G +G +VQLGE ++ PKR+S+
Sbjct: 643 EGEGDGSSAEGGQPGVRVLGDDPATGLPVTLRDGRFGPFVQLGEASAEKGAEKPKRSSLP 702
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
S+TLE AL LL P + HP+ G+PI+ L R G V+H +T A++ K+
Sbjct: 703 KGMTSGSVTLEIALRLLSLPREVAKHPETGEPILANLGRFGPYVQHGKTYANLGKDDDVL 762
Query: 1124 DVTLEKALEFLSGKDVRRC-GRPKGKPKR 1151
++ +A++ + K+ GRP P R
Sbjct: 763 EIGANRAIDLIVAKEQGGGRGRPSSDPGR 791
Score = 45.4 bits (106), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 25/150 (16%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ + HP + E +L G +G YVQ G+ A++ DV I A++L+
Sbjct: 722 PREVAKHPETGEPILANLGRFGPYVQHGK-------TYANLGKDDDVLEIGANRAIDLIV 774
Query: 1082 YPV--------------NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
LG HP DG ++++ + G V A++PK M +TL
Sbjct: 775 AKEQGGGRGRPSSDPGRTLGQHP-DGAALVVKAGKYGPYVSDGSVNATLPKTMAAESLTL 833
Query: 1128 EKALEFLSGKDVRRCGRPKGKPKREEALEA 1157
E+A++ ++ K G+ KP R+ A A
Sbjct: 834 EQAIDLINAKRASGGGK---KPVRKAASRA 860
>gi|218531563|ref|YP_002422379.1| DNA topoisomerase I [Methylobacterium extorquens CM4]
gi|218523866|gb|ACK84451.1| DNA topoisomerase I [Methylobacterium extorquens CM4]
Length = 910
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 344/809 (42%), Positives = 487/809 (60%), Gaps = 29/809 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG YEVL S+GH+RDL A+ GSV P+ DF+M+WEV +
Sbjct: 3 VVVVESPAKAKTINKYLGRDYEVLASFGHIRDLPAKDGSVDPEADFAMIWEVEDRGAKRV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ GAE LILA+DPDREGEAI+WH++E L + AL + I V RV F+ IT+AS+
Sbjct: 63 SEIARAVKGAEKLILATDPDREGEAISWHVIEALTARKAL-KGIPVERVTFNAITKASVD 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+ +RE
Sbjct: 122 AAMKKPRQIDQALVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVVERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ FKP+EYW++ A L + F A L KR+ +L +G+ EA ++
Sbjct: 182 MEIERFKPREYWSIIATLVTEAGGV-----FEARLVGADGKRIQRLDVGNAEEAAAFKRD 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A FQV + R P+ TSTLQQ+A+ KL + TM++AQ+LYEGV + G
Sbjct: 237 LELATFQVASIEAKPAKRHPQPPFTTSTLQQEASRKLGMAPAQTMRVAQRLYEGVDV-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G+ITYMRTDG+ ++ EA ++ R +I +G + P PRKY K KNAQEAHEA+R
Sbjct: 296 ETVGIITYMRTDGVDMAPEAIQDARQVIGREFGDAYVPV-APRKYTVKAKNAQEAHEAVR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFRS 769
PTD+ RLP ++ L+ + KLY LIW+RT+A QM+ A + + V++ I R+
Sbjct: 355 PTDMGRLPKHVARHLEPEQAKLYDLIWTRTIASQMESAELERTTVEVSANVGPRRIDLRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ V+F GF A Y+ E ++++ E L ++K GD L + QH T
Sbjct: 415 TGQVVKFDGFLALYQ----------EGKDDEEDEDAKRLPAMKAGDALKRERIASTQHFT 464
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE SLVK++EELGIGRPSTYA+ L+ L+DR YV ++ + L PE +GR+V+ FL
Sbjct: 465 EPPPRYSEASLVKRMEELGIGRPSTYAAVLQTLRDREYVRIEKKRLQPEDKGRLVTGFLE 524
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F +Y FTA +E +LD VS +W+ +L D+W FS+ + L + +V + L
Sbjct: 525 SFFKRYVEYDFTASLEEQLDRVSNAEIDWRSVLRDFWRDFSAAIGGTKELRVAEVLEALN 584
Query: 950 KTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK-TLYGD 1006
G +F + R+CP CG G L K+ +FGA FIGC+ +P C Y + + G
Sbjct: 585 GLLGPHIFPEKADGGDPRACPTCGAGQLSLKLGKFGA--FIGCSNYPECKYTRQLSASGV 642
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE---DRTGYLPKRASVS 1063
+ E D +++G PA+ V L+ G +G +VQLGE ++ PKR+S+
Sbjct: 643 EGEGDGSSAEGGQPGVRVLGDDPATGLPVTLRDGRFGPFVQLGEASAEKGAEKPKRSSLP 702
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
S+TLE AL LL P + HP+ G+PI+ L R G V+H +T A++ K+
Sbjct: 703 KGMTPGSVTLEIALRLLSLPREVAKHPETGEPILANLGRFGPYVQHGKTYANLGKDDDVL 762
Query: 1124 DVTLEKALEFLSGKDVRRC-GRPKGKPKR 1151
++ +A++ + K+ GRP P R
Sbjct: 763 EIGANRAIDLIVAKEQGGGRGRPSSDPGR 791
Score = 45.1 bits (105), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 25/150 (16%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ + HP + E +L G +G YVQ G+ A++ DV I A++L+
Sbjct: 722 PREVAKHPETGEPILANLGRFGPYVQHGK-------TYANLGKDDDVLEIGANRAIDLIV 774
Query: 1082 YPV--------------NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
LG HP DG ++++ + G V A++PK M +TL
Sbjct: 775 AKEQGGGRGRPSSDPGRTLGQHP-DGAALVVKAGKYGPYVSDGSVNATLPKTMAAESLTL 833
Query: 1128 EKALEFLSGKDVRRCGRPKGKPKREEALEA 1157
E+A++ ++ K G+ KP R+ A A
Sbjct: 834 EQAIDLVNAKRASGGGK---KPVRKTASRA 860
>gi|316933645|ref|YP_004108627.1| DNA topoisomerase I [Rhodopseudomonas palustris DX-1]
gi|315601359|gb|ADU43894.1| DNA topoisomerase I [Rhodopseudomonas palustris DX-1]
Length = 910
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 347/795 (43%), Positives = 489/795 (61%), Gaps = 39/795 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL S+GHVRDL A++GSV PD DF M+WEV A +
Sbjct: 2 NLVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDADFQMIWEVDPKAASR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL A+ LILA+DPDREGEAI+WH++E+++Q+ AL + V RVVF+ IT+ S+
Sbjct: 62 LNDIAKALKNADKLILATDPDREGEAISWHVLEVMKQKRALKDQ-QVERVVFNAITKQSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 SEAMKHPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI++F P+EYW++ A L DTF A L K++ +L IG+ EA+D ++
Sbjct: 181 ETEIEKFVPREYWSLIATLATPRG---DTFE--ARLVGADGKKIQRLDIGTGAEAEDFKK 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I +ANF+V + R+NP P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEGV +
Sbjct: 236 AIEAANFRVATVEAKP-ARRNPYAPFTTSTLQQEASRKLGFAPAHTMRVAQRLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ I A + R +I E +G+ + PE PR+Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQIDPSAITQARKVIAEDFGNAYVPE-APRQYTAKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI-GNADESIV-F 767
IRPTD+ R P+ +S LD D +LY LIW RT+A QM+ A + + VDI A ++
Sbjct: 353 IRPTDLSRRPSDVSRNLDSDQARLYELIWIRTVASQMESAELERTTVDIEAKAGPRVLEL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ V+F GF AAY++ +++ E L + + L + + QH
Sbjct: 413 RATGQVVKFDGFLAAYQE---------GRDDDSEDEDSRRLPPMSENEALKREALAVTQH 463
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP R+SE SLVK++EELGIGRPSTYAS L+VL+DR YV ++ + L+ E +GR+V AF
Sbjct: 464 FTEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVRLEKKRLHGEDKGRVVVAF 523
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F+ +Y FTA +E +LD +S WK +L D+W F + L + QV +
Sbjct: 524 LESFFTRYVEYDFTAGLEEDLDRISNNEVSWKQVLSDFWRDFIGAVDEIKDLRVAQVLDV 583
Query: 948 LEKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L++ G ++ + + R CP CG G L K +FGA F+GC+ +P C Y
Sbjct: 584 LDEMLGPHIYPAREDGGDPRQCPSCGTGKLNLKAGKFGA--FVGCSNYPECRYTR----- 636
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRASV 1062
L ++ D +++G P S +V +KSG +G Y+QLGE + G PKRA +
Sbjct: 637 ------PLASDSAGDADRVLGTDPDSGLEVAVKSGRFGPYIQLGEAKDYGEGEKPKRAGI 690
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+ LE AL+LL P +G HP+ GQPI + R G V+H +T AS+
Sbjct: 691 PKGTSPSDVDLEMALKLLALPREVGKHPETGQPIKAGIGRFGPYVQHEKTYASLEAGDDV 750
Query: 1123 NDVTLEKALEFLSGK 1137
+ + L +A+ ++ K
Sbjct: 751 HTIGLNRAVTLIAEK 765
>gi|349687429|ref|ZP_08898571.1| DNA topoisomerase I subunit omega [Gluconacetobacter oboediens
174Bp2]
Length = 908
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 348/794 (43%), Positives = 480/794 (60%), Gaps = 30/794 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD Y VL S+GHVRDL + GSV+PD+ F+MVWE +
Sbjct: 4 VVVVESPAKAKTINKYLGDDYTVLASFGHVRDLPPKDGSVKPDEGFAMVWETDERGSRQI 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GA++L LA+DPDREGEAI+WH+ L++++ L + I V RV F+EIT+++IK
Sbjct: 64 AAIAKALRGAKHLYLATDPDREGEAISWHVRATLEEKNLL-KGIDVQRVTFNEITKSAIK 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R +D L++AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 TAMAHPRGLDFPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKP+EYW+V A + + F A LTH +L+Q + + A D +
Sbjct: 183 AEIEVFKPREYWSVIARMTTPAGAA-----FSARLTHLDGHKLDQFDLNTEARAMDAKAA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + +F V K +R + R P P+ TST+QQ+A+ KL A M+ AQ+LYEG+ + G
Sbjct: 238 VEAGDFSVEKVERRKVRRNPPPPFTTSTMQQEASRKLGMGAQVAMRTAQQLYEGIDI-GG 296
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA IR I +G + PE+ R Y K KNAQEAHEAIR
Sbjct: 297 ETVGLITYMRTDGVQMAGEAISAIRGHIGHSFGPEYVPEKA-RMYSTKAKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+RR PA ++ L + KLY L+W R++A QMQ A + Q+ VDI + + + R++
Sbjct: 356 PTDVRRTPADMARYLSPEQKKLYDLVWKRSVASQMQSAELDQVAVDIVDRQQRVTLRATG 415
Query: 772 SRVEFLGFQAAYEDV--DAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S + F GF Y + D+ A K ++ DR +L ++K D + G+V +QH T
Sbjct: 416 SMIAFDGFLRLYSEGRDDSPA---KAEDDQDR-----MLPAMKERDAIGRGDVAAEQHFT 467
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RYSE SLVKK+EE+GIGRPSTYAS L VL+DRNYV +++R PE RGR+V+AFL+
Sbjct: 468 QPPPRYSEASLVKKMEEIGIGRPSTYASILTVLRDRNYVQLENRRFVPEDRGRLVTAFLT 527
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F D FTA +E +LD++S G W+ ++ +WS FS + L I V L+
Sbjct: 528 SFFERYVDTQFTAGLEEQLDDISGGRANWRDVMSAFWSDFSHAVDQTKDLKISDVITALD 587
Query: 950 KTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
F + R C C G L K+ R+GA FIGC+ +P C Y K +
Sbjct: 588 ADLAPYFFPQREDGQDPRVCTACHTGRLGLKLGRYGA--FIGCSNYPTCQYTRKLVVDPT 645
Query: 1008 DE-EDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE---DRTGYLPKRASVS 1063
E ED D +++G P + E+V ++ GP+G YVQ GE + PKRA++
Sbjct: 646 KEGEDAAALK---DGMRVLGTGP-TGEEVTVRRGPWGLYVQQGEPDPEDKKAKPKRATIP 701
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
D D ITLE A+ LL P +G HP+ G+PI L R G V+ S+ K+
Sbjct: 702 RGLDGDKITLEQAVGLLSLPRIVGIHPELGEPIEAGLGRFGPYVKMGAVYGSLDKDDDVL 761
Query: 1124 DVTLEKALEFLSGK 1137
V L +A++ L+ K
Sbjct: 762 TVGLNRAVDALAKK 775
>gi|347758696|ref|YP_004866258.1| DNA topoisomerase I [Micavibrio aeruginosavorus ARL-13]
gi|347591214|gb|AEP10256.1| DNA topoisomerase I [Micavibrio aeruginosavorus ARL-13]
Length = 884
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 362/835 (43%), Positives = 491/835 (58%), Gaps = 62/835 (7%)
Query: 348 SGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAA 407
S ++V+VES +KAK I YLG YEVL SYGHVRDL + GSV P++ F+M+WE+ A
Sbjct: 2 SASNLVIVESPSKAKTINKYLGPDYEVLASYGHVRDLPPKDGSVDPENGFAMLWELGDRA 61
Query: 408 WTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITE 467
+ I+ A+ A+ L LA+DPDREGEAI+WH+ E+L+ + L E V RV F+EIT+
Sbjct: 62 AKPVNDIRRAVKKAKALYLATDPDREGEAISWHVQELLKDEKLL-EGKQVFRVTFNEITK 120
Query: 468 ASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLI 527
+++ A + AR++DA LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL LI
Sbjct: 121 KAVQEAFKNARDLDAPLVEAYLARRALDYLVGFNLSPVLWRKLPGSRSAGRVQSVALRLI 180
Query: 528 CDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 587
C+RE EI++F+ EYWT+EA L H+ D F A LTH +L++L IGS +A
Sbjct: 181 CERESEIEKFRADEYWTIEARL-----HNRDGAPFTARLTHLSGNKLDKLDIGSEAQATA 235
Query: 588 IEQKINSANFQVIKNSKRSMVRK-NPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+I N V++N ++ VR+ P P+ITSTLQQ+A+ KL F A+ TM+LAQ+LYEG
Sbjct: 236 AANRIRGKNL-VVQNVEKKQVRRFPPAPFITSTLQQEASRKLGFGASQTMRLAQRLYEGT 294
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
++ +G GLITYMRTDG +S++A + R +I YG + P+ PR Y K KNAQEA
Sbjct: 295 EI-NGDTVGLITYMRTDGTTLSEDAVTQCRDVIKSNYGPKYLPD-APRLYKSKAKNAQEA 352
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPTD+ R P + +D+ +LY LIW RTMA QM+ A + Q+ DI + +V
Sbjct: 353 HEAIRPTDLSRTPDEVRMYVDDQMARLYELIWKRTMASQMENAVMDQVGADISDGTTDVV 412
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
R++ S V F GF Y++ G + +EEN R L L GD L +V Q
Sbjct: 413 LRATGSTVAFDGFLTLYQE---GQDDDETDEENRR------LPVLDKGDATKLIDVAQDQ 463
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RYSE SLVKK+EELGIGRPSTYAS L+VLQDR+YV + + PE RGR+V+
Sbjct: 464 HFTQPPPRYSEASLVKKMEELGIGRPSTYASILQVLQDRDYVRLDKKRFIPEDRGRLVTT 523
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA +E ELD ++AG WK L +W FS ++L I +V
Sbjct: 524 FLSKFFTRYVDYDFTATLEEELDAIAAGQAHWKDALAQFWKDFSKAVGDTKNLTITEVID 583
Query: 947 MLEKTFGDSLFASLPN-KD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
L+ G F + + KD R CP C EG L K+ +FGA FIGC +P C Y +
Sbjct: 584 NLDAELGPHFFPVVEHGKDPRICPACNEGRLSLKLGKFGA--FIGCANYPDCRYTRPLVV 641
Query: 1005 GDDDEEDTLQRNTN--------VDEPKLIGHHPASKEKVLLKSGPYGFYVQLG------- 1049
DE + PK++GH P + V L+ GPYG YVQ+
Sbjct: 642 PSADENAEGGEAGGESGLAAQLANAPKILGHDPVTGRAVSLRRGPYGPYVQIDPPEAPPA 701
Query: 1050 ----------ED--------------RTGYLPKRASVSHIKDVDSITLEDALELLRYPVN 1085
ED T PKR V ++ I L AL+LL P
Sbjct: 702 PAVEEKAPEVEDGTAKKGKGKAKKKKETAEKPKRQGVPKGLKLEDIDLAAALKLLELPRE 761
Query: 1086 LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKDVR 1140
+G HP+ + I + R G + H+ + S+PK + + +A++ ++ K R
Sbjct: 762 VGLHPETKEMIKAGIGRFGPFLVHQGSYTSIPKGDDVLTIGINRAVDLIAAKAER 816
>gi|91205527|ref|YP_537882.1| DNA topoisomerase I [Rickettsia bellii RML369-C]
gi|122425631|sp|Q1RIM1.1|TOP1_RICBR RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase I;
AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName: Full=Untwisting
enzyme
gi|91069071|gb|ABE04793.1| DNA topoisomerase I [Rickettsia bellii RML369-C]
Length = 800
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 333/788 (42%), Positives = 490/788 (62%), Gaps = 24/788 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++FSM +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVIPDENFSMKYDISEKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AE++ LA+DPDREGE+I+WHI E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIIKDAKKAESVYLATDPDREGESISWHIAEVIKEKNKVKSDDFFKRVAFNEITKKAIT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAIENPRKLDNNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + EAKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMLNSNNE-----LFTAKLTHINDQKLEKFSITNDKEAKDLTEK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S NF V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQNFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A EIR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAVDEIRKLINKDYGDKYLP-SSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I +P L L++D KLY LIW RT+ACQM+ + + + + ++ + R++
Sbjct: 356 PTNINYIPNDLKEKLEKDYYKLYELIWKRTIACQMENVIMDLVNATLASENKEYLARANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK + L E+ QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESIDDEAEEENKMLPPLKEQEHLKTKEIIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYA+ L VLQDR YVT++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYATILSVLQDRKYVTLEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++W+ F+ +I ++ +++
Sbjct: 526 FKKYVEYDFTAGLENELDEIAAGKLEWKSALGNFWNGFNHNIESVNKQNITEIISYVQQA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
+F NKD + CP C G L K+ +FGA F+ C+ +P CN+ + G+D+ E
Sbjct: 586 LDYHIFGE--NKDSKVCPSCKTGELSLKLGKFGA--FLACSNYPECNFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYL-PKRASVSHIKDVD 1069
+ V+E K++G E + LK GPYG Y+Q GE + PKR+ + + +
Sbjct: 642 ADGEAKDIVNENKVLGKDKEGIE-IYLKKGPYGPYIQYGEQVDSKIKPKRSPLPAGLNQN 700
Query: 1070 SITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEK 1129
ITL+ AL+LL P+ +GNH + G+ +++ + G +++ S+PK +++L+
Sbjct: 701 DITLDMALKLLSLPLKIGNHKESGEEVLVGYGKFGPYIKYMGKFISIPKKYDFLNLSLDD 760
Query: 1130 ALEFLSGK 1137
A++ + K
Sbjct: 761 AMKLIEEK 768
>gi|163868293|ref|YP_001609502.1| DNA topoisomerase I [Bartonella tribocorum CIP 105476]
gi|161017949|emb|CAK01507.1| DNA topoisomerase I [Bartonella tribocorum CIP 105476]
Length = 858
Score = 634 bits (1635), Expect = e-178, Method: Compositional matrix adjust.
Identities = 346/792 (43%), Positives = 484/792 (61%), Gaps = 34/792 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+V+ S+GHVRDL A+ GSV PD DFSM W++ SAA
Sbjct: 2 NIVIVESPAKAKTINKYLGPQYKVVASFGHVRDLPAKDGSVLPDQDFSMKWDIDSAAAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L + + RVVF+ IT+ S+
Sbjct: 62 LNEIAKAVKEADSLILATDPDREGEAISWHILDVLRQKKVLKDK-PIKRVVFNAITKKSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDR
Sbjct: 121 LDAMNNPRDIDTSLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F ++YW++ L ++ F A LT F +++ +L I S +A I
Sbjct: 181 ESEIEHFIKEDYWSITTQL-----KTIRNDHFQARLTMFNQRKIGKLDIQSQEQADQIRL 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A + + + R P+ TSTLQQ A++KL FSA+ TM++AQKLYEG+++ +
Sbjct: 236 MLEKAQYHTLSVEAKPTKRNPFPPFTTSTLQQAASSKLGFSASRTMQIAQKLYEGIEI-N 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R +I E +G + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GEVAGLITYMRTDGVQIAPEAIDAARKVIHESFGKDYIPEK-PRFYSTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD +R P + LD+D KLY LIW R +A QM A + + V+I D R
Sbjct: 354 RPTDFQRSPNQVRNFLDDDQAKLYELIWKRAIASQMCSAEIERTTVEIEAQQGDNRANLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S V F GF + Y D + +EEN+ L + TG+ L +VE QH
Sbjct: 414 ATGSVVRFDGFISVYTD--------QRDEENNEENETTRLPQINTGEALTKEKVESLQHT 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP+RYSE SL+KKLEELGIGRPSTYASTL L DR Y+ + R L P+ +GR+V+AFL
Sbjct: 466 TEPPSRYSEASLIKKLEELGIGRPSTYASTLATLCDRGYIVIDKRKLIPDAKGRIVTAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F+ +Y FTAD+E +LD +S G WK +L D+W F++ + Q L I V +L
Sbjct: 526 ENFFNRYVEYGFTADLEEKLDLISDGKLSWKDVLRDFWDGFNTSISNIQELRIANVLDVL 585
Query: 949 EKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
T F P ++ RSCP+C G L K+ R+GA F+GC+ +P C Y +
Sbjct: 586 NVTLAPLAF---PEREDGSDVRSCPLCKNGQLSLKLGRYGA--FVGCSNYPECRYTRQLG 640
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
D +EE+ RN DEP ++G P + + + L++G +G Y+Q GE + KRA +
Sbjct: 641 TTDTEEENEAVRN---DEPVMLGIDPETGKDISLRNGRFGPYIQRGESKE---VKRAGLP 694
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
++ITLE AL LL P +G HP+ G+ I + R G + H A + +
Sbjct: 695 KEWQAENITLERALALLSLPREIGIHPETGKMITATIGRYGPYLSHNGKSARLLHADEVF 754
Query: 1124 DVTLEKALEFLS 1135
D+ + +A+ L+
Sbjct: 755 DIGINRAVTVLA 766
Score = 43.5 bits (101), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 23/131 (17%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ IG HP + + + G YG Y+ + K A + H +V I + A+ +L
Sbjct: 714 PREIGIHPETGKMITATIGRYGPYL-------SHNGKSARLLHADEVFDIGINRAVTVLA 766
Query: 1082 YP---------------VNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
LG HP+ G + +R R G V + A++PK P VT
Sbjct: 767 EQQENKTKQSRTTSAALATLGEHPEGGT-VTVRNGRYGPYVNWGKINATLPKEKDPISVT 825
Query: 1127 LEKALEFLSGK 1137
L +ALE +S K
Sbjct: 826 LSEALELISAK 836
>gi|90423742|ref|YP_532112.1| DNA topoisomerase I [Rhodopseudomonas palustris BisB18]
gi|90105756|gb|ABD87793.1| DNA topoisomerase I [Rhodopseudomonas palustris BisB18]
Length = 922
Score = 634 bits (1634), Expect = e-178, Method: Compositional matrix adjust.
Identities = 352/817 (43%), Positives = 495/817 (60%), Gaps = 54/817 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL S+GHVRDL A++GSV PD +F M+WE+ A
Sbjct: 2 NIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDANFQMIWEIDPKAAGR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL GA+ LILA+DPDREGEAI+WH++E+L+++ A+ ++ + RVVF+ IT+ ++
Sbjct: 62 LNDIAKALKGADKLILATDPDREGEAISWHVLEVLKEKRAIKDH-KIERVVFNAITKQAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 TDAMKNPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F P+EYW++ A L F A LT K++ +L IG+ EA+D +Q
Sbjct: 181 ELEIEKFVPREYWSLVATLTTPRGEM-----FEARLTGADGKKIQRLDIGTGAEAEDFKQ 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I +A F V + R+NP P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEG+ +
Sbjct: 236 AIEAALFNVASVEAKP-ARRNPYAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ I A + R +I E YG + PE PR+Y K KNAQEAHEA
Sbjct: 294 GGETTGLITYMRTDGVQIDSSAITQARQVIGEDYGKQYVPE-APRQYTAKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF-- 767
IRPTD+ R PA L LD D ++LY LIW RT+A QM+ A + + V+I S V
Sbjct: 353 IRPTDLSRRPASLRARLDHDQIRLYELIWIRTIASQMESAELERTTVEIAAKAGSRVLEL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ V+F GF A Y+ + +++ E L ++ G+ L ++ + QH
Sbjct: 413 RATGQVVKFDGFLAVYQ---------EGRDDDGDDEDSRRLPAMSQGEALARKDLAVTQH 463
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP R+SE SLVK++EELGIGRPSTYAS L+VL+DR YV + + L+ E +GR+V AF
Sbjct: 464 FTEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVKLDKKRLHAEDKGRVVVAF 523
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L ++F+ +Y FTA +E LD +S W+ +L D+W+ F + L + QV
Sbjct: 524 LENFFARYVEYDFTAALEENLDRISNNEISWQQVLRDFWTDFIGAVNDIKDLRVAQVLDA 583
Query: 948 LEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY---IA 1000
L+ G ++A P D R CP CG G L K +FGA F+GC+ +P C Y +A
Sbjct: 584 LDDMLGSHIYA--PRDDGGDPRQCPSCGTGKLNLKAGKFGA--FVGCSNYPECRYTRPLA 639
Query: 1001 KTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLP 1057
GD D +++G P S +V +K+G +G Y+QLG+ + G P
Sbjct: 640 ADGGGDGD--------------RILGKDPVSGLEVAVKAGRFGPYIQLGDAKDYAEGEKP 685
Query: 1058 KRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVP 1117
KRA + + LE AL+LL P +G HP+ G+PI + R G V+H +T AS+
Sbjct: 686 KRAGIPKNSSPGDMELELALKLLSLPREVGKHPETGEPIKAGIGRFGPYVQHEKTYASLE 745
Query: 1118 KNMKPNDVTLEKAL-----EFLSGKDVRRCGRPKGKP 1149
+ D+ L +A+ + L G RR G GKP
Sbjct: 746 AGDEVFDIGLNRAVTLIAEKILKGPSKRRFGSDPGKP 782
>gi|395782863|ref|ZP_10463234.1| DNA topoisomerase I [Bartonella rattimassiliensis 15908]
gi|395416472|gb|EJF82847.1| DNA topoisomerase I [Bartonella rattimassiliensis 15908]
Length = 857
Score = 633 bits (1633), Expect = e-178, Method: Compositional matrix adjust.
Identities = 349/792 (44%), Positives = 490/792 (61%), Gaps = 35/792 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+V+ S+GHVRDL A+ GSV PD DF M W+V SA+
Sbjct: 2 NIVIVESPAKAKTINKYLGSQYKVVASFGHVRDLPAKDGSVLPDQDFFMKWDVDSASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L + + RVVF+ IT+ S+
Sbjct: 62 LNEIAKAVKEADSLILATDPDREGEAISWHILDVLRQKKVLKDK-PIKRVVFNAITKKSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDR
Sbjct: 121 LDAMNNPRDIDTSLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F ++YW++ L ++ SF A LT F +++ +L I S +A I
Sbjct: 181 ESEIEHFIKEDYWSITTQL-----KTIRNDSFQARLTMFNQRKIGKLDIQSQEQADQIRL 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A + + + R P+ TSTLQQ A++KL FSA+ TM++AQKLYEG+++ +
Sbjct: 236 MLEKAQYHTLSVEAKPTKRNPFPPFTTSTLQQAASSKLGFSASRTMQIAQKLYEGIEI-N 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA +E R +I E +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GEMAGLITYMRTDGVQIAPEAIEEARKVIHESFGNDYIPEK-PRFYSTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD +R P + LD D KLY LIW R +A QM+ A + + V+I +E R
Sbjct: 354 RPTDFQRTPNQICNFLDSDQAKLYELIWKRAIASQMRSAEIERTTVEIEAQQGEERANLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S V F GF + Y D ++NEEN+ L + TG+ L +VE QH
Sbjct: 414 ATGSVVRFDGFISVYTD--------QQNEENNEENESTRLPQINTGEDLTKEKVESIQHT 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP+RYSE SL+KKLEELGIGRPSTYASTL L DR Y+ + R L P+ +GR+V+AFL
Sbjct: 466 TEPPSRYSEASLIKKLEELGIGRPSTYASTLATLCDRGYIIIDKRKLIPDAKGRIVTAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F+ +Y FTAD+E +LD +S G WK +L ++W F++ + Q L I V +L
Sbjct: 526 ENFFNRYVEYGFTADLEEKLDLISDGKLSWKDVLRNFWDGFNASISNIQELRIANVLDIL 585
Query: 949 EKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
T F P ++ RSCP+C G L K+ R+GA F+GC+ +P C Y + L
Sbjct: 586 NVTLAPLAF---PKREDGSDVRSCPLCKNGQLSLKLGRYGA--FVGCSNYPDCKY-TRQL 639
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
D +E++ RN DEP ++G P + + + L++G +G Y+QLGE + KRA +
Sbjct: 640 GTDTEEDNEAVRN---DEPIMLGIDPETGKDISLRNGRFGPYIQLGESKE---VKRAGLP 693
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
D ITLE AL LL P +G HP+ G+ I + R G + H A + +
Sbjct: 694 KEWQADHITLEKALALLSLPREIGIHPETGKIITATIGRYGPYLSHNGKSARLLYADEVF 753
Query: 1124 DVTLEKALEFLS 1135
D+ + +A+ L+
Sbjct: 754 DIGINRAVTVLA 765
Score = 43.9 bits (102), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 23/131 (17%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ IG HP + + + G YG Y+ + K A + + +V I + A+ +L
Sbjct: 713 PREIGIHPETGKIITATIGRYGPYL-------SHNGKSARLLYADEVFDIGINRAVTVLA 765
Query: 1082 YP---------------VNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
LG HP +G P+ +R R G V + A++PK P VT
Sbjct: 766 EQQENKIKQSRTTSAALATLGEHP-EGGPVTVRHGRYGPYVNWGKVNATLPKEKDPISVT 824
Query: 1127 LEKALEFLSGK 1137
L +ALE +S K
Sbjct: 825 LPEALELISAK 835
>gi|395766689|ref|ZP_10447228.1| DNA topoisomerase I [Bartonella doshiae NCTC 12862]
gi|395415813|gb|EJF82240.1| DNA topoisomerase I [Bartonella doshiae NCTC 12862]
Length = 870
Score = 633 bits (1633), Expect = e-178, Method: Compositional matrix adjust.
Identities = 346/800 (43%), Positives = 488/800 (61%), Gaps = 31/800 (3%)
Query: 344 LYPPSGK--SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVW 401
L+ SGK ++V+VES KAK I YLG Y+V+ S+GHVRDL A+ GSV PD DF+M W
Sbjct: 9 LFQHSGKIMNIVIVESPAKAKTINKYLGSQYKVMASFGHVRDLPAKDGSVLPDQDFAMKW 68
Query: 402 EVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVV 461
+ SA+ L I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L + ++ RVV
Sbjct: 69 NIDSASTKRLNEIAKAVKEADSLILATDPDREGEAISWHILDVLRQKKVLTDK-SIKRVV 127
Query: 462 FHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQS 521
F+ IT+ S+ A++ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS
Sbjct: 128 FNAITKKSVLDAMKNPRDIDTSLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQS 187
Query: 522 AALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGS 581
AL +IC RE EI+ F ++YW++ L ++ F A LT F K++ +L I S
Sbjct: 188 VALRIICARETEIEHFVKEDYWSITTDL-----KTIRNDVFQARLTLFNQKKIGKLDIKS 242
Query: 582 HTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQK 641
+A I + A + + + R P+ TSTLQQ A+++L FSA+ TM++AQK
Sbjct: 243 QEQADQISLMLEEAKYHTLSVEAKPTKRNPSPPFTTSTLQQAASSQLGFSASRTMQIAQK 302
Query: 642 LYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVK 701
LYEGV++ +G AGLITYMRTDG+ I+ EA R +I E +GS + PE+ PR Y K K
Sbjct: 303 LYEGVEI-NGETAGLITYMRTDGVQIAPEAIDSARKVIHESFGSIYLPEK-PRFYSTKAK 360
Query: 702 NAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--G 759
NAQEAHEAIRPTD +R P + L+ D KLY LIW R +A QM+ A + + V+I
Sbjct: 361 NAQEAHEAIRPTDFQRTPNQVRNFLESDQAKLYELIWKRAIASQMRSAEIERTTVEIEAQ 420
Query: 760 NADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYL 819
+ R+ S + F GF + Y D + EEN L + TG+ L
Sbjct: 421 KGENHANLRAIGSVIRFDGFISVYTD--------QREEENSEGNEEKRLPQINTGETLTK 472
Query: 820 GEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEF 879
+VE QH T+PP RYSE SL+KKLEELGIGRPSTYASTL L DR Y+ + R L P+
Sbjct: 473 EKVEAVQHTTEPPPRYSEASLIKKLEELGIGRPSTYASTLSTLCDRGYIIIDKRKLIPDA 532
Query: 880 RGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSL 939
+GR+V+AFL ++F+ +Y FTAD+E +LD +S G WK ++ D+W F++ T + L
Sbjct: 533 KGRIVTAFLENFFNRYVEYGFTADLEEKLDLISDGKLSWKDVMRDFWDGFNASITNIKEL 592
Query: 940 HIHQVEKMLEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
I V +L T F + RSCP+C G L K+ R+GA F+GC+ +P C
Sbjct: 593 RITNVLDVLNVTLAPLAFPVREDGSDIRSCPLCTNGQLSLKLGRYGA--FVGCSNYPECK 650
Query: 998 YIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLP 1057
Y + L D EE+ + RN DEP ++G P + + + ++G +G Y+QLGE +
Sbjct: 651 Y-TRQLGTDTGEENEIIRN---DEPVILGVDPKTGKDIFFRTGRFGPYIQLGESKEA--- 703
Query: 1058 KRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVP 1117
KR SV V++ITL+ AL L+ P +G HP+ G+ I + R G + H + A +
Sbjct: 704 KRVSVPKEWQVENITLDKALALISLPREIGIHPETGKIITAAIGRYGPYLTHDKKYAPLL 763
Query: 1118 KNMKPNDVTLEKALEFLSGK 1137
+ D+ + +A+ L+ K
Sbjct: 764 HTDEVFDIGINRAVTVLAEK 783
>gi|157827243|ref|YP_001496307.1| DNA topoisomerase I [Rickettsia bellii OSU 85-389]
gi|157802547|gb|ABV79270.1| DNA topoisomerase I [Rickettsia bellii OSU 85-389]
Length = 800
Score = 633 bits (1633), Expect = e-178, Method: Compositional matrix adjust.
Identities = 337/789 (42%), Positives = 490/789 (62%), Gaps = 26/789 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++FSM +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVIPDENFSMKYDISEKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AE++ LA+DPDREGE+I+WHI E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIIKDAKKAESVYLATDPDREGESISWHIAEVIKEKNKVKSDDFFKRVAFNEITKKAIT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAIENPRKLDNNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + EAKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMLNSNNE-----LFTAKLTHINDQKLEKFSITNDKEAKDLTEK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S NF V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQNFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A EIR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAVDEIRKLINKDYGDKYLP-SSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I +P L L++D KLY LIW RT+ACQM+ + + + + ++ + R++
Sbjct: 356 PTNINYIPNDLKEKLEKDYYKLYELIWKRTIACQMENVIMDLVNATLASENKEYLARANG 415
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF Y E +D A EEN +L LK + L E+ QH T+
Sbjct: 416 STIAFDGFYKVYCESIDDEA-----EEEN------KMLPPLKEQEHLKTKEIIPNQHFTE 464
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKKLEELGIGRPSTYA+ L VLQDR YVT++ + PE GR+V+ FL
Sbjct: 465 PPPRYSEASLVKKLEELGIGRPSTYATILSVLQDRKYVTLEKKRFIPEELGRLVTVFLVG 524
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + +Y FTA +E ELD ++AG EWK L ++W+ F+ +I ++ +++
Sbjct: 525 FFKKYVEYDFTAGLENELDEIAAGKLEWKSALGNFWNGFNHNIESVNKQNITEIISYVQQ 584
Query: 951 TFGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDE 1009
+F NKD + CP C G L K+ +FGA F+ C+ +P CN+ + G+D+
Sbjct: 585 ALDYHIFGE--NKDSKVCPSCKTGELSLKLGKFGA--FLACSNYPECNFRKSIVSGNDNN 640
Query: 1010 EDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYL-PKRASVSHIKDV 1068
E + V+E K++G E + LK GPYG Y+Q GE + PKR+ + +
Sbjct: 641 EADGEAKDIVNENKVLGKDKEGIE-IYLKKGPYGPYIQYGEQVDSKIKPKRSPLPAGLNQ 699
Query: 1069 DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
+ ITL+ AL+LL P+ +GNH + G+ +++ + G +++ S+PK +++L+
Sbjct: 700 NDITLDMALKLLSLPLKIGNHKESGEEVLVGYGKFGPYIKYMGKFISIPKKYDFLNLSLD 759
Query: 1129 KALEFLSGK 1137
A++ + K
Sbjct: 760 DAMKLIEEK 768
>gi|144898215|emb|CAM75079.1| DNA topoisomerase I [Magnetospirillum gryphiswaldense MSR-1]
Length = 886
Score = 633 bits (1633), Expect = e-178, Method: Compositional matrix adjust.
Identities = 359/808 (44%), Positives = 487/808 (60%), Gaps = 31/808 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG ++VL SYGH+RDL A+ GSVRPD+ F+M WE + + +
Sbjct: 3 VVVVESPAKAKTINKYLGSDFQVLASYGHIRDLPAKDGSVRPDEGFAMDWEADAKSERQI 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K I A+ A+ L LA+DPDREGEAI+WH+ +L+ + L + V RVVF+EIT++++
Sbjct: 63 KEIANAVKKADKLFLATDPDREGEAISWHVQAVLEAKGVL-KGKEVKRVVFNEITKSAVT 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ RE+ +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 122 EAMRNPREVHQDLVDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK QEYWT+ A + + A LTH +L++ ++G+ T A +
Sbjct: 182 TEIESFKSQEYWTLAADFLTAKGAMIT-----AGLTHLNGVKLDKFALGNETSALAAKAA 236
Query: 592 INSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I +A+F V + +R ++NP P+ TSTLQQ+A+ KL++ A TM+LAQ+LYEGV +
Sbjct: 237 IEAASFTV-ASVERKKAKRNPYAPFTTSTLQQEASRKLHYGAQKTMQLAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA R LI + +G + P PR Y K KNAQEAHE I
Sbjct: 295 GETVGLITYMRTDGVQMAAEAIAATRDLIAKDFGKDYVPS-APRLYKTKAKNAQEAHECI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ R P ++ LD D L+LY LIW RT+A QM A + Q+ VD+ ++ + IV R++
Sbjct: 354 RPTDLFRRPDQVARYLDRDQLRLYELIWKRTVASQMAAAELDQVAVDVTSSGKDIVMRAT 413
Query: 771 CSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S V F GF Y ED D E++E++R +L + G+ + +V QH T
Sbjct: 414 GSVVVFEGFLKVYREDRDDSPAPGAEDDESER-----LLPDVTEGEAMARQDVRADQHFT 468
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP R+SE SLVK++EELGIGRPSTYAS L VLQDRNYV + R PE RGR+V+AFL
Sbjct: 469 QPPPRFSEASLVKRMEELGIGRPSTYASILSVLQDRNYVRLDQRRFIPEDRGRLVTAFLE 528
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF +Y+FTAD+E +LD VS G WK +L D+W +F + L + +V + L+
Sbjct: 529 SYFGRYVEYNFTADLENQLDEVSDGKINWKKVLEDFWRQFQGAVEGTKELRVSEVIEKLD 588
Query: 950 KTFGDSLFA--SLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
G F + R CP+C G L K+ +FGA FIGC +P C Y
Sbjct: 589 AELGAHFFPDDGTGHDPRLCPLCNAGRLSLKLGKFGA--FIGCANYPECRYTRPLAVA-- 644
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKD 1067
E D PK +G P S E V L+ GPYG+YVQLGE G PKR S+ +
Sbjct: 645 GEGGEGGGEPLPDGPKELGIEPGSGEPVTLRKGPYGWYVQLGE---GAKPKRVSLYKGLE 701
Query: 1068 VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
+I LE L+LL P ++G HP+ + I + R G + H S+ K+ V +
Sbjct: 702 PGAIDLEIGLKLLALPRDVGEHPETRKMIKAGVGRFGPYLLHDGVYKSLAKDDDVLTVGM 761
Query: 1128 EKALEFLS---GK---DVRRCGRPKGKP 1149
+A+E LS GK ++ G GKP
Sbjct: 762 NRAVELLSQAKGKAAGPLKTLGEHDGKP 789
>gi|154247837|ref|YP_001418795.1| DNA topoisomerase I [Xanthobacter autotrophicus Py2]
gi|154161922|gb|ABS69138.1| DNA topoisomerase I [Xanthobacter autotrophicus Py2]
Length = 901
Score = 633 bits (1633), Expect = e-178, Method: Compositional matrix adjust.
Identities = 354/807 (43%), Positives = 485/807 (60%), Gaps = 37/807 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VV+VES KAK I YLG YEV+ SYGHVRDL ++ GSV PD DF M+WEV A L
Sbjct: 3 VVIVESPAKAKTINKYLGPGYEVIASYGHVRDLPSKDGSVDPDADFRMLWEVDPKAQKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ GA+ LILA+DPDREGEAI+WH++E+L+Q+ AL + V RVVF+ IT+ ++
Sbjct: 63 NEIATAVKGADGLILATDPDREGEAISWHVLEVLKQKKALKDQ-KVERVVFNAITKQAVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++A R ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDRE
Sbjct: 122 DAMKAPRAIDVALVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F +EYW++ A L + F A LT K++ +LS+G+ EAK
Sbjct: 182 REIETFVQKEYWSILARLATPRAEE-----FEARLTGADGKKITRLSVGTAEEAKAFRAA 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ +A+F+V + M R P+ TSTLQQ+A+ KL + TM++AQ+LYEGV + G
Sbjct: 237 LEAADFRVRSVEAKPMRRHPQPPFTTSTLQQEASRKLGLAPARTMQIAQRLYEGVDV-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA RS I +++G + P PRKY K KNAQEAHEAIR
Sbjct: 296 ETVGLITYMRTDGVDMAPEAVAATRSAIGKQFGPKYLPGV-PRKYTTKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFRS 769
PTD R P ++ LD + KLY LIW RT+A QM+ A + + DI ++ +
Sbjct: 355 PTDPSRHPREVARHLDGEQAKLYELIWIRTVASQMESAELERTTADIEAKAGGRTLDLTA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ + V+F GF Y + G ++EE+ R A + L D L QH T
Sbjct: 415 TGTVVKFDGFLTLYRE---GKDDEDDDEESRRLPAMSANEKLNRRDIL------TTQHFT 465
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE SLVK++EELGIGRPSTYA+ L VL+DR YV ++ + L PE +GR+V+AFL
Sbjct: 466 EPPPRYSEASLVKRMEELGIGRPSTYAAVLAVLRDREYVKLEKKRLVPEDKGRLVTAFLE 525
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F +Y FTAD+E +LD VSA +WK +L +W F + + L + QV L+
Sbjct: 526 SFFKRYVEYDFTADLEEKLDEVSAAELDWKEVLRAFWQDFHTAVEATKDLRVSQVLDALD 585
Query: 950 KTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
+ +F P +D R CP CG G L K+ +FGA FIGC+ +P C + + L G
Sbjct: 586 EMLTAHIFP--PTQDGSDPRLCPTCGNGRLSLKMGKFGA--FIGCSNYPECRHT-RPLTG 640
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
D E +R +D P S E V +++G +G Y+QLGE + G PKR+S+
Sbjct: 641 DGAPEGDGKRELGID--------PESGEDVTIRAGRFGTYLQLGEGKDGEKPKRSSLPKG 692
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ LE AL+LL P +G HP+DG+PI+ + R G V+H RT A++ +
Sbjct: 693 LAPADVDLETALKLLALPREVGKHPEDGEPILAGIGRYGPYVQHGRTYANIEDGDDILAI 752
Query: 1126 TLEKALEFLSGKDVR-RCGRPKGKPKR 1151
L +A+ ++ K + R GR P R
Sbjct: 753 GLNRAVVLIAEKQSKGRGGRGAATPGR 779
>gi|86749539|ref|YP_486035.1| DNA topoisomerase I [Rhodopseudomonas palustris HaA2]
gi|86572567|gb|ABD07124.1| DNA topoisomerase I [Rhodopseudomonas palustris HaA2]
Length = 911
Score = 633 bits (1633), Expect = e-178, Method: Compositional matrix adjust.
Identities = 350/814 (42%), Positives = 494/814 (60%), Gaps = 47/814 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL S+GHVRDL A++GSV PD +F M+WE+ A
Sbjct: 2 NLVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDANFQMIWEIDPKAAGR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL GA+ LILA+DPDREGEAI+WH++E+L+Q+ AL + V RVVF+ IT+ S+
Sbjct: 62 LNDIAKALKGADKLILATDPDREGEAISWHVLEVLKQKRALKDQ-KVERVVFNAITKQSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+Q REID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 TEAMQHPREIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
EMEI++F +EYW++ A L + F A L K++ +L IG+ EA+D +Q
Sbjct: 181 EMEIEKFVAREYWSLIATLTTPRGDA-----FEARLVGADGKKIQRLDIGTGAEAEDFKQ 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I +ANF V + + R+NP P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEG+ +
Sbjct: 236 AIETANFNV-SSVEAKPARRNPYAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ I A + R +I E YGS + P+ PR+Y K KNAQEAHEA
Sbjct: 294 GGETTGLITYMRTDGVQIDPSAITQARKVIAEDYGSAYVPDS-PRQYQAKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF-- 767
IRPTD+ R P+ ++ LD D +LY LIW RT+A QM+ A + + VDI S V
Sbjct: 353 IRPTDLSRRPSEVNKRLDSDQARLYELIWVRTVASQMESAEMERTTVDIEAKAGSRVLEL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ V+F GF AAY++ +++ E L ++ + L + + QH
Sbjct: 413 RATGQVVKFDGFLAAYQE---------GRDDDSEDEDSRRLPAMSENEALKREALAVTQH 463
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP R+SE SLVK++EELGIGRPSTYAS L+VL+DR YV ++ + L+ E +GR+V AF
Sbjct: 464 FTEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVKLEKKRLHGEDKGRVVIAF 523
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F+ +Y FTA +E +LD +S W+ +L D+W+ F + L + QV +
Sbjct: 524 LESFFARYVEYDFTAALEEKLDRISNNEISWQQVLRDFWTDFIGAVNDIKELRVAQVLDV 583
Query: 948 LEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
L++ G ++A P +D R CP CG G L K +FGA F+GC+ +P C +
Sbjct: 584 LDEMLGPHIYA--PREDGGDPRQCPSCGTGRLNLKAGKFGA--FVGCSNYPECRHT---- 635
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRA 1060
D +++G P + +V +KSG +G Y+QLG+ + G PKRA
Sbjct: 636 ------RPLAADGGGADADRVLGLDPDTGFEVAVKSGRFGPYIQLGDAKDYAEGEKPKRA 689
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
+ + L+ AL LL P +G HP+ G+PI + R G V+H +T AS+
Sbjct: 690 GIPKGTSPSDVELDVALRLLALPREVGKHPETGEPIKAGIGRFGPYVQHEKTYASLEAGD 749
Query: 1121 KPNDVTLEKALEFLS-----GKDVRRCGRPKGKP 1149
+++ L +A+ ++ G RR G GKP
Sbjct: 750 DVHNIGLNRAVTLIAEKIAKGPSKRRFGADPGKP 783
>gi|410944481|ref|ZP_11376222.1| DNA topoisomerase I subunit omega [Gluconobacter frateurii NBRC
101659]
Length = 901
Score = 633 bits (1632), Expect = e-178, Method: Compositional matrix adjust.
Identities = 349/813 (42%), Positives = 489/813 (60%), Gaps = 45/813 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG + VL S+GHVRDL + GSVRPD++F+M W+ +
Sbjct: 4 VVVVESPAKAKTINKYLGSGFTVLASFGHVRDLPPKDGSVRPDENFAMSWQTDDRGSKQI 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GA+NL LA+DPDREGEAI+WH+ +L+++ L + I V RV F+EIT+A++
Sbjct: 64 AAIAKALKGAKNLYLATDPDREGEAISWHVRSVLEEKKLL-KGIDVHRVTFNEITKAAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ RE+D L+ AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 AAMAGPRELDQPLIDAYLARRALDYLVGFTLSPVLWRKLPGSKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHT---EAKDI 588
EI+ F+P+EYWTV + + F A LTH + +L+Q + + T EA+DI
Sbjct: 183 AEIEVFRPKEYWTVTGGFNTPAKAA-----FQARLTHLKGNKLDQFDLNNETLAFEARDI 237
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ + F V ++ R P P+ TSTLQQ+A+ KL SA TM+ AQ+LYEGV L
Sbjct: 238 ---VQAGQFTVRSVERKRTKRNPPPPFTTSTLQQEASRKLGMSAQTTMRTAQQLYEGVDL 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G GLITYMRTDG+ ++ EA IR I + +G + P+ PR Y K KNAQEAHE
Sbjct: 295 -GGETIGLITYMRTDGVTMAKEAIGAIRGHIGKAFGDEYVPDY-PRAYSTKAKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
A+RPTD+ R PA ++ L + +LY L+W R +A QMQ A + Q+ V + +A + R
Sbjct: 353 AVRPTDVFRTPAQVAHALSPEQKRLYELVWKRAVASQMQSAELDQVAVTLADASGQTLLR 412
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S + F GF Y + G K +E+ + +L +K GD + V+ +QH
Sbjct: 413 ATGSTIAFDGFLKLYIE---GRDDTKSEDEDGK-----LLPPMKEGDRVSTTGVDAEQHF 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RYSE SLVKK+EE+GIGRPSTYAS L VL+DRNYV + ++ PE RGR+V+AFL
Sbjct: 465 TQPPPRYSEASLVKKMEEIGIGRPSTYASVLGVLRDRNYVRMDAKRFMPEDRGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F D FTA +E +LD++S G +W ++ +W FS+ + L I V L
Sbjct: 525 TSFFERYVDTGFTASLEEQLDDISGGRADWHDVMAAFWQDFSAAVAQTKDLKISDVIDAL 584
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
++ G F P +D R C CG G L ++ +FGA FIGC+ +P C + + L
Sbjct: 585 DEDLGAHFFP--PKEDGSDPRVCTSCGTGRLGLRLGKFGA--FIGCSNYPTCQF-TRRLI 639
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLPKRA 1060
DD + + L D PK++G P S E + ++ GP+G Y+Q G ED+ PKR
Sbjct: 640 ADDGDTEGLS-----DGPKILGQDPESGEDITVRRGPWGLYIQKGEPNPEDKKAK-PKRT 693
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
++ D ++I+LE AL LL P +G HP+ G+ I L R G V+ ++ K+
Sbjct: 694 TIPKGLDGNTISLEQALGLLSLPRFVGLHPETGEKIEAGLGRFGPYVKMGAIYGTLDKDD 753
Query: 1121 KPNDVTLEKALEFLSGK--DVRRCG-RPK-GKP 1149
V L +A++ L+ K +R G PK G+P
Sbjct: 754 DVLTVGLNRAVDSLAKKLASIRNLGAHPKDGEP 786
>gi|414162266|ref|ZP_11418513.1| DNA topoisomerase I [Afipia felis ATCC 53690]
gi|410880046|gb|EKS27886.1| DNA topoisomerase I [Afipia felis ATCC 53690]
Length = 917
Score = 633 bits (1632), Expect = e-178, Method: Compositional matrix adjust.
Identities = 341/811 (42%), Positives = 489/811 (60%), Gaps = 46/811 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL SYGHVRDL A++GSV P+ +F M+WE A
Sbjct: 2 NLVIVESPAKAKTINKYLGSSYEVLASYGHVRDLPAKNGSVDPEANFQMIWETDPKAAGR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL GA+ LILA+DPDREGEAI+WH++E+++Q+ AL + + RVVF+ IT+ S+
Sbjct: 62 LNDIAKALKGADKLILATDPDREGEAISWHVLEVMKQKRALKDQ-KIERVVFNAITKQSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+Q R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 TEAMQHPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F P+EYW++ A L + + F A L K++ +L IGS EA+D ++
Sbjct: 181 ELEIEKFVPREYWSLVATLATPRNET-----FEARLVGADGKKIQRLDIGSGAEAEDFKK 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ + + V + R P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEG+ +
Sbjct: 236 ALENGTYTVALVEAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I+ EA +R +I E YG+ + P PR+Y K KNAQEAHEAI
Sbjct: 295 GETTGLITYMRTDGVSIAPEAIPAVRKVIGEDYGNDYVPS-APRQYTSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD+ R PA L LD D +LY LIW RT+A QM+ A + + VDI ++ R
Sbjct: 354 RPTDVSRRPAKLKARLDNDQYRLYELIWMRTVASQMESAELERTTVDIIAKAGARTLDLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+S V+F GF A Y++ G E+EE+ R L ++ G+ L + + QH
Sbjct: 414 ASGQVVKFDGFLAVYQE---GRDDDPEDEESRR------LPAMSEGEALKRESLAVTQHF 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP R+SE SLVK++EELGIGRPSTYAS L+VL+DR YV ++ + L E +GR+V AFL
Sbjct: 465 TEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVKLEKKRLSAEDKGRVVVAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F+ ++ FTAD+E +LD +S WK +L D+W F + + + +V +L
Sbjct: 525 EKFFARYVEFDFTADLEEKLDKISNNEVAWKQVLTDFWKDFIGAVDDIKDVRVSEVLDVL 584
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
+ G+ ++ P D R CP CG G L K +FGA F+GC+ +P C Y
Sbjct: 585 DAMLGEHIYE--PRADGGDPRQCPSCGTGKLNLKAGKFGA--FVGCSNYPECRYTRPLA- 639
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRAS 1061
+++ +++G P + V +K+G +G Y+QLGE + P+RA
Sbjct: 640 -----------SSSASSDRVLGKDPKTGLDVAVKAGRFGPYIQLGEPKDYAEDEKPRRAG 688
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + L+ A++LL P ++G HP+DG+ I + R G VRH +T AS+
Sbjct: 689 IPKNMSPADVELDLAIKLLSLPRDVGPHPEDGEIITAGIGRFGPFVRHGKTYASLEAGDD 748
Query: 1122 PNDVTLEKALEFLSGKDV----RRCGRPKGK 1148
++ L +A+ ++ K RR G GK
Sbjct: 749 VYNIGLNRAVTLIAEKIAKGPSRRFGADPGK 779
>gi|365893834|ref|ZP_09432002.1| DNA topoisomerase I [Bradyrhizobium sp. STM 3843]
gi|365425428|emb|CCE04544.1| DNA topoisomerase I [Bradyrhizobium sp. STM 3843]
Length = 934
Score = 633 bits (1632), Expect = e-178, Method: Compositional matrix adjust.
Identities = 344/796 (43%), Positives = 487/796 (61%), Gaps = 42/796 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL S+GHVRDL A++GSV PD +F M+WEV A
Sbjct: 2 NIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDHNFRMIWEVDPKAAGR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I +L GA+ LILA+DPDREGEAI+WH++E+L+++ AL + + RVVF+ IT+ ++
Sbjct: 62 LNEIAKSLKGADRLILATDPDREGEAISWHVLEVLKEKRALKDQ-KIERVVFNAITKQAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 SEAMKHPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F P+EYW++ A L S F A L K++ +L IG+ EA+D ++
Sbjct: 181 ELEIEKFVPREYWSLIATLATPRGDS-----FEARLVGADGKKIQRLDIGTGAEAEDFKK 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +A F V + R P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEG+ +
Sbjct: 236 ALQAAAFTVTTVDAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I+ EA + R +I E YG+ + P+ PR+Y K KNAQEAHEAI
Sbjct: 295 GETTGLITYMRTDGVQIAPEAITQARKVIGEIYGNAYVPDS-PRQYQTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFR 768
RPTD+ R PA L LD+D KLY LIW+RT+A QM+ A + + VDI ++ R
Sbjct: 354 RPTDLSRRPAELRRRLDDDQAKLYELIWTRTIASQMESAELERTTVDITAKAGSRTLELR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ V+F GF A Y+ E +++ E L + G+PL ++ + QH
Sbjct: 414 ATGQVVKFDGFLALYQ----------EGRDDEEDEDSRRLPHMSQGEPLKRQDLSVTQHF 463
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP R+SE SLVK++EELGIGRPSTYAS L+VL+DR YV ++ + L+ E +GR+V AFL
Sbjct: 464 TEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVKLEKKRLHGEDKGRVVVAFL 523
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F +Y FTAD+E +LD +S W+ +L D+W F + L + QV +L
Sbjct: 524 ENFFRRYVEYDFTADLEEQLDRISNNEISWQQVLKDFWRDFIGAVDDIKDLRVAQVLDVL 583
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
++ G ++ P D R CP CG G L K +FGA F+GC+ +P C Y
Sbjct: 584 DEMLGPHIYP--PRADGGDVRQCPTCGTGRLNLKAGKFGA--FVGCSNYPECRYTR---- 635
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRAS 1061
L ++ +++G P S V +K+G +G Y+QLGE + G PKRA
Sbjct: 636 -------PLAADSEAAADRVLGQDPESGLDVTIKAGRFGPYIQLGEQKDYAEGEKPKRAG 688
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + LE AL+LL P +G HP+ G PI + R G VRH +T AS+ +
Sbjct: 689 IPKGTQPSDVDLELALKLLSLPREIGRHPETGLPITAGIGRFGPFVRHDKTYASLEAGDE 748
Query: 1122 PNDVTLEKALEFLSGK 1137
DV L +A+ ++ K
Sbjct: 749 VFDVGLNRAVTLIAEK 764
>gi|240850662|ref|YP_002972062.1| DNA topoisomerase I [Bartonella grahamii as4aup]
gi|240267785|gb|ACS51373.1| DNA topoisomerase I [Bartonella grahamii as4aup]
Length = 857
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 345/806 (42%), Positives = 492/806 (61%), Gaps = 35/806 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+V+ S+GHVRDL A+ GSV PD DFSM W++ S+A
Sbjct: 2 NIVIVESPAKAKTINKYLGSQYKVVASFGHVRDLPAKDGSVLPDRDFSMKWDIDSSAAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L + + RVVF+ IT+ S+
Sbjct: 62 LNEIAKAVKEADSLILATDPDREGEAISWHILDVLRQKKVLKDK-PIKRVVFNAITKKSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDR
Sbjct: 121 LDAMNNPRDIDTSLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F ++YW+V L ++ SF A LT F +++ +L I S +A I
Sbjct: 181 ESEIEHFIKEDYWSVTTQL-----KTIRNDSFQARLTMFNQRKIGKLDIQSQEQADQIRF 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ + + + + R P+ TSTLQQ A++KL FSA+ TM++AQKLYEG+++ +
Sbjct: 236 MLEKSQYHTLSVEAKPTKRNPLPPFTTSTLQQAASSKLGFSASRTMQIAQKLYEGIEI-N 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R +I E +G + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQIAPEAIDSARKVIHETFGKDYIPEK-PRFYSTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD +R P+ + LD D KLY LIW R +A QM+ A + + V+I + R
Sbjct: 354 RPTDFQRNPSQVRNFLDSDQAKLYELIWKRAIASQMRSAEIERTTVEIEAQQGENRANLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S + F GF + Y D + +EEN+ L + TG+ L +VE QH
Sbjct: 414 ATGSVIRFDGFISVYTD--------QRDEENNEENETTRLPQVNTGEALTKEKVESVQHT 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP+RYSE SL+KKLEELGIGRPSTYASTL L DR Y+ + R L P+ +GR+V+AFL
Sbjct: 466 TEPPSRYSEASLIKKLEELGIGRPSTYASTLATLCDRGYIVIDKRKLIPDAKGRIVTAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F+ +Y FTAD+E +LD +S G WK +L D+W F++ + Q L I V +L
Sbjct: 526 ENFFNRYVEYGFTADLEEKLDLISDGKLSWKDVLRDFWDGFNASISNIQELRITNVLDVL 585
Query: 949 EKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
T F P ++ RSCP+C G L K+ R+GA F+GC+ +P C Y + L
Sbjct: 586 NVTLAPLAF---PEREDGSDVRSCPLCKNGQLSLKLGRYGA--FVGCSNYPECKYTHQ-L 639
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
D EE+ RN DEP ++G P + + + L++G +G Y+QLGE + KRA +
Sbjct: 640 GTDTGEENEAVRN---DEPVILGIDPETGKDISLRNGRFGPYIQLGESKE---VKRAGLP 693
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
+++TL+ AL LL P +G HP+ G+ I + R G + H A + +
Sbjct: 694 KEWQAENVTLDKALALLSLPREIGVHPESGKTITATIGRYGPYLSHNGKSARLLHADEVF 753
Query: 1124 DVTLEKALEFLSGKDVRRCGRPKGKP 1149
D+ + +A+ L+ + + + + P
Sbjct: 754 DIGINRAVTVLAEQQENKTKQSRATP 779
>gi|395793388|ref|ZP_10472790.1| DNA topoisomerase I [Bartonella vinsonii subsp. arupensis Pm136co]
gi|395430770|gb|EJF96799.1| DNA topoisomerase I [Bartonella vinsonii subsp. arupensis Pm136co]
Length = 853
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 347/803 (43%), Positives = 484/803 (60%), Gaps = 29/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+V+ S+GHVRDL A+ GSV PD DFSM W V SAA
Sbjct: 2 NIVIVESPAKAKTINKYLGSQYKVVASFGHVRDLPAKDGSVLPDQDFSMKWSVDSAATKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L + V RVVF+ IT+ S+
Sbjct: 62 LNEIAKAVKEADSLILATDPDREGEAISWHILDILRQKKVLKDK-PVKRVVFNAITKKSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDR
Sbjct: 121 LDAMSNPRDIDTSLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F ++YW++ L ++ F A LT F K++ +L I S +A I
Sbjct: 181 ESEIEHFIKEDYWSITTNL-----KTIRNDDFQARLTMFNQKKIGKLDIQSQEQADQIRL 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A ++ + + R P+ TSTLQQ A++KL FSA+ TM++AQKLYEGV++ +
Sbjct: 236 MLEGAKYRTLSVEAKPTKRNPSPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVEM-N 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA + R +I E +G + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GEMAGLITYMRTDGVQIAPEAIESARKVIHETFGKDYIPEK-PRFYSTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV--FR 768
RPTD +R P + LD D KLY LIW R +A QM A + + V+I E R
Sbjct: 354 RPTDFQRSPDQVRNFLDSDQAKLYELIWKRAIASQMCSAEIERTTVEIEALKEENCANLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S + F GF + Y D + EEN L + G+ L +VE QH
Sbjct: 414 ATGSVIRFDGFISVYTD--------QREEENSEENETTRLPQINAGESLTKEKVEAIQHS 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KKLEELGIGRPSTYASTL L DR Y+ + R L P+ +GR+V+AFL
Sbjct: 466 TEPPPRYSEASLIKKLEELGIGRPSTYASTLSTLCDRGYIVIDKRKLIPDAKGRIVTAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F+ +Y FTAD+E +LD +S G WK ++ D+W F++ T + L I V +L
Sbjct: 526 ENFFNRYVEYGFTADLEEKLDLISDGKLSWKDVMRDFWDEFNASITNIKELRITNVLDVL 585
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
T F + RSCP+C G L K+ R+GA F+GC+ +P C Y + L +
Sbjct: 586 NVTLAPLAFPLREDGSDVRSCPLCTNGQLSLKLGRYGA--FVGCSNYPECKY-TRQLGTE 642
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
EE+ RN DEP ++G P + + + L++G +G Y+QLGE + KR +
Sbjct: 643 TGEENDTMRN---DEPLMLGIDPKTGQDISLRNGRFGPYIQLGESKEA---KRVGLPKEW 696
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
++ITL+ AL L+ P +G HP+ G+ I + R G + H A + + + D+
Sbjct: 697 KAENITLDKALALISLPREIGIHPETGKMITATIGRYGPYLSHDGKSAPLLQADEVFDIG 756
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
+ +A+ L+ K + R + P
Sbjct: 757 INRAVTVLAEKQGNKTTRSRTTP 779
>gi|209543808|ref|YP_002276037.1| DNA topoisomerase I [Gluconacetobacter diazotrophicus PAl 5]
gi|209531485|gb|ACI51422.1| DNA topoisomerase I [Gluconacetobacter diazotrophicus PAl 5]
Length = 924
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 344/794 (43%), Positives = 482/794 (60%), Gaps = 30/794 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD + VL S+GHVRDL + GSVRPD++F+M W+ +
Sbjct: 4 VVVVESPAKAKTINKYLGDGFTVLASFGHVRDLPPKDGSVRPDENFAMDWQADERGSRQM 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GA +L LA+DPDREGEAI+WH+ ML++++ L + + V RV F+EIT+++I+
Sbjct: 64 AAIAKALRGARHLYLATDPDREGEAISWHVRAMLEEKNLL-KGVDVQRVTFNEITKSAIR 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D L++AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 AAMAQPRDLDQPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+ +EYWTV A + + +F A LTH ++L+Q + A +
Sbjct: 183 AEIESFRAREYWTVAA-----QFTTPGGAAFTARLTHLAGRKLDQFDLHDEAGAMAAKAA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + F V +R + R P P+ TST+QQ+A+ KL A TM+ AQ+LYEG+ L G
Sbjct: 238 VEAGRFAVQSVERRKVRRNPPPPFTTSTMQQEASRKLGMGAQGTMRTAQQLYEGIDL-GG 296
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA IR I E +G+ + PE+ R Y K KNAQEAHEAIR
Sbjct: 297 ETVGLITYMRTDGVQMAGEAIAAIRGHIGESFGAPYVPEKA-RIYSTKAKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ R PA ++ L+++ +LY LIW R++A QMQ A + Q+ V+I +A + R++
Sbjct: 356 PTDVSRTPAQMARYLNDEQRRLYELIWKRSVASQMQSAELDQVIVEIADAGGAATLRATG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y + A E +++ R +L ++ D L GEV QH TQP
Sbjct: 416 SMIAFDGFLKLYSEGRDDAAPKDEQDDDSR-----MLPPMRERDALKTGEVAADQHFTQP 470
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P R+SE SLVKK+EE+GIGRPSTYAS L VL+DRNYV + +R PE RGR+V+AFL+ +
Sbjct: 471 PPRFSEASLVKKMEEIGIGRPSTYASILTVLRDRNYVRLDARRFVPEDRGRLVTAFLTSF 530
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F D FTA +E +LD++S G +W+ ++ +W FS + L I V L+
Sbjct: 531 FERYVDTQFTAGLEEQLDDISGGRADWRDVMSAFWQDFSRAVDQTKDLKISDVISALDAD 590
Query: 952 FGDSLF-ASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG--DD 1007
F A L D R C CG G L K+ R+GA FIGC+ +P C + + + +D
Sbjct: 591 LAPHFFPAHLDGSDPRVCTACGTGRLGLKLGRYGA--FIGCSNYPTCQFTRRLVVDPKED 648
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLPKRASVS 1063
E DTL+ D +L+G P E V ++ GP+G YVQ G ED+ P+RA++
Sbjct: 649 GEADTLK-----DGMRLLGQTPGG-EDVTVRRGPWGLYVQQGEPDPEDKKAK-PRRATIP 701
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
+ D ITL+ AL LL P +G HP+ G+ I L R G V+ S+ K+
Sbjct: 702 RGIEGDKITLDQALGLLSLPRVVGIHPETGEQIEAGLGRFGPYVKMGAVYGSLDKDDDIL 761
Query: 1124 DVTLEKALEFLSGK 1137
V L +A++ L+ K
Sbjct: 762 TVGLNRAVDVLARK 775
>gi|414341866|ref|YP_006983387.1| DNA topoisomerase I [Gluconobacter oxydans H24]
gi|411027201|gb|AFW00456.1| DNA topoisomerase I [Gluconobacter oxydans H24]
Length = 901
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 346/813 (42%), Positives = 491/813 (60%), Gaps = 45/813 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG + VL S+GHVRDL + GSVRPD++F+M W+ +
Sbjct: 4 VVVVESPAKAKTINKYLGSGFTVLASFGHVRDLPPKDGSVRPDENFAMSWQTDDRGSKQI 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GA+NL LA+DPDREGEAI+WH+ +L+++ L + I V RV F+EIT+A++
Sbjct: 64 AAIAKALKGAKNLYLATDPDREGEAISWHVRSVLEEKKLL-KGIDVHRVTFNEITKAAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ RE+D L+ AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 AAMAGPRELDQPLIDAYLARRALDYLVGFTLSPVLWRKLPGSKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHT---EAKDI 588
EI+ F+P+EYWTV + + F A LTH + +L+Q + + T EA+DI
Sbjct: 183 AEIEVFRPKEYWTVTGGFNTPAKAA-----FQARLTHLKGNKLDQFDLNNETLAFEARDI 237
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ + F V ++ R P P+ TSTLQQ+A+ KL SA TM+ AQ+LYEGV L
Sbjct: 238 ---VQAGQFTVRSVERKRTKRNPPPPFTTSTLQQEASRKLGMSAQTTMRTAQQLYEGVDL 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G GLITYMRTDG+ ++ EA IR I + +G + P+ PR Y K KNAQEAHE
Sbjct: 295 -GGETIGLITYMRTDGVTMAKEAIGAIRGHIGKAFGDEYVPDY-PRAYSTKAKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
A+RPTD+ R PA ++ L + +LY L+W R +A QMQ A + Q+ V + +A + R
Sbjct: 353 AVRPTDVFRTPAQVAHALSPEQKRLYELVWKRAVASQMQSAELDQVAVTLADASGQTLLR 412
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S + F GF Y + G K +E+ + +L ++K GD + V+ +QH
Sbjct: 413 ATGSTIAFDGFLKLYIE---GRDDTKSEDEDGK-----LLPAMKEGDRVSTTGVDAEQHF 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RYSE SLVKK+EE+GIGRPSTYAS L VL+DRNYV ++++ PE RGR+V+AFL
Sbjct: 465 TQPPPRYSEASLVKKMEEIGIGRPSTYASVLSVLRDRNYVRMEAKRFMPEDRGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F D FTA +E +LD++S G +W ++ +W FS+ + L I V L
Sbjct: 525 TSFFERYVDTGFTASLEEQLDDISGGRADWHDVMAAFWHDFSAAVAQTKDLKISDVIDAL 584
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
++ G F P +D R C CG G L ++ +FGA FIGC+ +P C + + L
Sbjct: 585 DEDLGAHFFP--PKEDGSDPRVCTSCGTGRLGLRLGKFGA--FIGCSNYPTCQF-TRRLV 639
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLPKRA 1060
D+ ++ L+ D K++G P + E + ++ GPYG Y+Q G ED+ PKR
Sbjct: 640 ADEGADEGLK-----DGIKVLGQDPETGEDITIRRGPYGLYIQKGEPNPEDKKAK-PKRT 693
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
++ D +++T+E AL LL P +G HP+ G+ I L R G V+ ++ K+
Sbjct: 694 TIPKGLDGNTMTMEQALGLLSLPRLVGLHPETGEKIEAGLGRFGPYVKMGAIYGTLDKDD 753
Query: 1121 KPNDVTLEKALEFLSGK--DVRRCG-RPK-GKP 1149
V L +A++ L+ K +R G PK G+P
Sbjct: 754 DVLTVGLNRAVDSLAKKLASIRNLGAHPKDGEP 786
>gi|453329977|dbj|GAC87955.1| DNA topoisomerase I [Gluconobacter thailandicus NBRC 3255]
Length = 901
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 346/813 (42%), Positives = 491/813 (60%), Gaps = 45/813 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG + VL S+GHVRDL + GSVRPD++F+M W+ +
Sbjct: 4 VVVVESPAKAKTINKYLGSGFTVLASFGHVRDLPPKDGSVRPDENFAMSWQTDDRGSKQI 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GA+NL LA+DPDREGEAI+WH+ +L+++ L + I V RV F+EIT+A++
Sbjct: 64 AAIAKALKGAKNLYLATDPDREGEAISWHVRSVLEEKKLL-KGIDVHRVTFNEITKAAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ RE+D L+ AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 AAMAGPRELDQPLIDAYLARRALDYLVGFTLSPVLWRKLPGSKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHT---EAKDI 588
EI+ F+P+EYWTV + + F A LTH + +L+Q + + T EA+DI
Sbjct: 183 AEIEVFRPKEYWTVTGGFNTPAKAA-----FQARLTHLKGNKLDQFDLNNETLAFEARDI 237
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ + F V ++ R P P+ TSTLQQ+A+ KL SA TM+ AQ+LYEGV L
Sbjct: 238 ---VQAGQFTVRSVERKRTKRNPPPPFTTSTLQQEASRKLGMSAQTTMRTAQQLYEGVDL 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G GLITYMRTDG+ ++ EA IR I + +G + P+ PR Y K KNAQEAHE
Sbjct: 295 -GGETIGLITYMRTDGVTMAKEAIGAIRGHIGKAFGDEYVPDY-PRAYSTKAKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
A+RPTD+ R PA ++ L + +LY L+W R +A QMQ A + Q+ V + +A + R
Sbjct: 353 AVRPTDVFRTPAQVAHALSPEQKRLYELVWKRAVASQMQSAELDQVAVTLADASGQTLLR 412
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S + F GF Y + G K +E+ + +L ++K GD + V+ +QH
Sbjct: 413 ATGSTIAFDGFLKLYIE---GRDDTKSEDEDGK-----LLPAMKEGDRVSTTGVDAEQHF 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RYSE SLVKK+EE+GIGRPSTYAS L VL+DRNYV ++++ PE RGR+V+AFL
Sbjct: 465 TQPPPRYSEASLVKKMEEIGIGRPSTYASVLSVLRDRNYVRMEAKRFMPEDRGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F D FTA +E +LD++S G +W ++ +W FS+ + L I V L
Sbjct: 525 TSFFERYVDTGFTASLEEQLDDISGGRADWHDVMAAFWHDFSAAVAQTKDLKISDVIDAL 584
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
++ G F P +D R C CG G L ++ +FGA FIGC+ +P C + + L
Sbjct: 585 DEDLGAHFFP--PKEDGSDPRVCTSCGTGRLGLRLGKFGA--FIGCSNYPTCQF-TRRLV 639
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLPKRA 1060
D+ ++ L+ D K++G P + E + ++ GPYG Y+Q G ED+ PKR
Sbjct: 640 ADEGADEGLK-----DGIKVLGQDPETDEDITIRRGPYGLYIQKGEPNPEDKKAK-PKRT 693
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
++ D +++T+E AL LL P +G HP+ G+ I L R G V+ ++ K+
Sbjct: 694 TIPKGLDGNTMTMEQALGLLSLPRLVGLHPETGEKIEAGLGRFGPYVKMGAIYGTLDKDD 753
Query: 1121 KPNDVTLEKALEFLSGK--DVRRCG-RPK-GKP 1149
V L +A++ L+ K +R G PK G+P
Sbjct: 754 DVLTVGLNRAVDSLAKKLASIRNLGAHPKDGEP 786
>gi|170742472|ref|YP_001771127.1| DNA topoisomerase I [Methylobacterium sp. 4-46]
gi|168196746|gb|ACA18693.1| DNA topoisomerase I [Methylobacterium sp. 4-46]
Length = 913
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 345/815 (42%), Positives = 488/815 (59%), Gaps = 43/815 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG YEVL S+GHVRDL A+ GSV P+ DF M+WE+ +
Sbjct: 3 VVVVESPAKAKTINKYLGHDYEVLASFGHVRDLPAKDGSVDPEQDFKMLWELEERGAKRV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ GA+ LILA+DPDREGEAI+WH++E LQ + L +++ V RV F+ IT+ +++
Sbjct: 63 SEIARAVKGADTLILATDPDREGEAISWHVLEALQAKRVL-KDVAVERVTFNAITKDAVQ 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDRE
Sbjct: 122 TAMANPRQIDQALVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKP+EYW++ A L + + F A L KR+ +L +G+ EA+ +
Sbjct: 182 AEIEAFKPREYWSLVATLATAKGAT-----FEARLVGADGKRIQRLDVGTAEEAEAFRRD 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A F V + R P+ TSTLQQ+A+ KL + TM++AQ+LYEGV++ G
Sbjct: 237 LELATFAVASVESKPAKRHPQPPFTTSTLQQEASRKLGLAPAQTMRIAQRLYEGVEI-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA ++ R +I +G + P PR Y K KNAQEAHEA+R
Sbjct: 296 ETVGLITYMRTDGVDMAPEAIRDARRVIGAEFGDAYLPG-APRSYSVKAKNAQEAHEAVR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPA----TVGQIQVDIGNADESIVF 767
PTD+ RLP ++ L+ + KLY LIW RT+A QM+ A TV +I +G +
Sbjct: 355 PTDLGRLPKEVARFLEPEQAKLYELIWIRTIASQMESAELERTVVEIAAQVGP--RRLDL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ V F GF Y+ E ++++ E L ++ GDPL V QH
Sbjct: 413 RATGQVVRFDGFLTLYQ----------EGKDDEEDEESRRLPPMQAGDPLRRERVAATQH 462
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SLVK++EELGIGRPSTYA+ L+VL+DR YV + + L PE +GR+V+ F
Sbjct: 463 FTEPPPRYSEASLVKRMEELGIGRPSTYAAVLQVLRDREYVRLDKKRLVPEDKGRLVTGF 522
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F +Y FTAD+E +LD +S +W+ +L D+W FS+ + L +V +
Sbjct: 523 LESFFQRYVEYDFTADLEEQLDRISNAEIDWREVLRDFWRDFSAALAGTKELRTAEVLEA 582
Query: 948 LEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYI---- 999
L + G +F P D R+CP C GTL K+ +FGA F+GC+ +P C Y
Sbjct: 583 LNQLLGPHIFP--PRADGANPRACPNCAGGTLSLKLGKFGA--FVGCSNYPECKYTRQLS 638
Query: 1000 AKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE---DRTGYL 1056
A L GD + V +++G PA+ V L+ G +G +VQLGE ++
Sbjct: 639 AAGLDGDGEGSAGEGGQPGV---RVLGEDPATGLPVTLRDGRFGPFVQLGEASAEKGAEK 695
Query: 1057 PKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASV 1116
PKR+S+ +TLE AL+LL P + HP+ G+PI++ L R G V+H +T A++
Sbjct: 696 PKRSSLPRGLTPADVTLETALKLLALPREVARHPESGEPILVNLGRFGPYVQHGKTYANL 755
Query: 1117 PKNMKPNDVTLEKALEFLSGKDVRRCGRPKGKPKR 1151
K+ ++ +A++ + K+ + GRP P R
Sbjct: 756 GKDDDLLEIGANRAIDLIVAKE-QGGGRPAADPGR 789
Score = 40.0 bits (92), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 20/128 (15%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
P+ + HP S E +L+ G +G YVQ G+ A++ D+ I A++L+
Sbjct: 722 PREVARHPESGEPILVNLGRFGPYVQHGK-------TYANLGKDDDLLEIGANRAIDLIV 774
Query: 1081 -------RYPVN----LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEK 1129
R + LGN P +G+ + ++ R G V A++PK +TLE+
Sbjct: 775 AKEQGGGRPAADPGRVLGNDP-EGRAVTVKAGRYGPYVTDGEVNATLPKGADKEALTLEE 833
Query: 1130 ALEFLSGK 1137
AL + +
Sbjct: 834 ALRLIVAR 841
>gi|217979944|ref|YP_002364091.1| DNA topoisomerase I [Methylocella silvestris BL2]
gi|217505320|gb|ACK52729.1| DNA topoisomerase I [Methylocella silvestris BL2]
Length = 977
Score = 630 bits (1626), Expect = e-177, Method: Compositional matrix adjust.
Identities = 348/810 (42%), Positives = 487/810 (60%), Gaps = 39/810 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VV+VES KAK I YLG YEV PSYGHVRDL A+ GSV PD DF+M+W+V + L
Sbjct: 3 VVIVESPAKAKSINKYLGKGYEVYPSYGHVRDLPAKDGSVDPDADFAMLWDVDVKSAKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A+ +ILA+DPDREGEAI+WH++E+L+ + L + V RVVF+ IT++++
Sbjct: 63 NEIARAVKDADKIILATDPDREGEAISWHVLEVLKAKKVLKDK-PVERVVFNAITKSAVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+Q R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDRE
Sbjct: 122 EAMQHPRQIDVALVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
+EI+ F +EYW++ A L + F A L K++ +L +G+ EA +
Sbjct: 182 LEIEAFVAREYWSIVAHLRTQADAP-----FTARLVGADGKKITRLDVGTGAEAAAFKTD 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ +A F+V + + R P+ TSTLQQ+A+ KL F+ TM+LAQ+LYEG + DG
Sbjct: 237 LENATFRVAEIEAKPAKRHPSAPFTTSTLQQEASRKLGFAPARTMQLAQRLYEGADI-DG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA RS+I ++G + P+ PRKY K KNAQEAHEAIR
Sbjct: 296 ETVGLITYMRTDGVDLAPEAITSARSVIARQFGDAYVPK-APRKYTVKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFRS 769
PTD+ RLP ++ L+ D KLY LIW+RT+A QM+ A + + VDI + R+
Sbjct: 355 PTDLARLPRAVARALEPDQAKLYELIWTRTIASQMESAELERTTVDIEALAGARKLDLRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ V F GF Y+ E +++ + A L + + L +E QH T
Sbjct: 415 TGQVVRFDGFLKLYQ----------EGRDDEDDDESARLPDMAKDERLKRERIEADQHFT 464
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP R++E +LVK++EELGIGRPSTYASTL VL++R+YV ++ + L+PE +GR+V+AFL
Sbjct: 465 EPPPRFTEATLVKRMEELGIGRPSTYASTLAVLRERDYVRIEKKRLHPEDKGRLVTAFLE 524
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F+ Y FTAD+E +LD VS +WK +L D+W FS + L +V L
Sbjct: 525 AFFARYVGYDFTADLEEKLDRVSNHEIDWKQVLRDFWLDFSGALAGTKDLRTTEVLDRLN 584
Query: 950 KTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
+ G +F P +D R CP CGEG L K+ +FGA FIGC+ +P C + +TL
Sbjct: 585 EILGPHIFP--PKEDGSDPRGCPSCGEGKLSLKLGKFGA--FIGCSNYPECKF-TRTLAA 639
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
D E V K +G P S E++ L+ G +G YVQ GE G PKR+S+
Sbjct: 640 PDGAEANGGERPGV---KSLGVDPDSGEEITLRDGRFGVYVQQGE---GEKPKRSSLPPT 693
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+TLE A+ LL P + HP+ +PI+ + R G V+H +T A+V K+ +
Sbjct: 694 IAPADLTLEQAIALLSLPREVARHPESKEPIVAGIGRYGPYVQHGKTYANVAKDEDIISI 753
Query: 1126 TLEKALEFL----SGKDVRRCGRPKGKPKR 1151
+A++ + SG RR G + P R
Sbjct: 754 GANRAIDLIVAKESGLTGRRFGASESAPAR 783
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 19/131 (14%)
Query: 1023 KLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRY 1082
+++G HPA V +K+G YG YV G+ LPK A D ++TLE A+ LL
Sbjct: 783 RVLGEHPAGG-AVSVKAGRYGPYVTHGK-INATLPKEA------DPTTLTLEGAVALLAA 834
Query: 1083 PVN----------LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALE 1132
+ LG+HP G PI +R R G V H +T A++ ++ +TLE+A+
Sbjct: 835 KASGGGAPMQGRLLGDHPSGG-PITVRAGRFGAYVNHGKTNATLKRDASAETITLEEAIR 893
Query: 1133 FLSGKDVRRCG 1143
+ K+ G
Sbjct: 894 LIEDKEAAGGG 904
>gi|162145884|ref|YP_001600342.1| DNA topoisomerase I [Gluconacetobacter diazotrophicus PAl 5]
gi|161784458|emb|CAP53988.1| DNA topoisomerase I [Gluconacetobacter diazotrophicus PAl 5]
Length = 924
Score = 630 bits (1626), Expect = e-177, Method: Compositional matrix adjust.
Identities = 342/794 (43%), Positives = 481/794 (60%), Gaps = 30/794 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD + VL S+GHVRDL + GSVRPD++F+M W+ +
Sbjct: 4 VVVVESPAKAKTINKYLGDGFTVLASFGHVRDLPPKDGSVRPDENFAMDWQADERGSRQM 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GA +L LA+DPDREGEAI+WH+ ML++++ L + + V RV F+EIT+++I+
Sbjct: 64 AAIAKALRGARHLYLATDPDREGEAISWHVRAMLEEKNLL-KGVDVQRVTFNEITKSAIR 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D L++AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 AAMAQPRDLDQPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+ +EYWTV A + + +F A LTH +L+Q + A +
Sbjct: 183 AEIESFRAREYWTVAA-----QFTTPGGAAFTARLTHLAGCKLDQFDLHDEAGAMAAKAA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + F V +R + R P P+ TST+QQ+A+ KL A TM+ AQ+LYEG+ L G
Sbjct: 238 VEAGRFAVQSVERRKVRRNPPPPFTTSTMQQEASRKLGMGAQGTMRTAQQLYEGIDL-GG 296
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA IR I E +G+ + PE+ R Y K KNAQEAHEAIR
Sbjct: 297 ETVGLITYMRTDGVQMAGEAIAAIRGHIGESFGAPYVPEKA-RIYSTKAKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ R PA ++ L+++ +LY LIW R++A QMQ A + Q+ V+I +A + R++
Sbjct: 356 PTDVSRTPAQMARYLNDEQRRLYELIWKRSVASQMQSAELDQVIVEIADAGGAATLRATG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y + A E +++ R +L ++ D L GEV QH TQP
Sbjct: 416 SMIAFDGFLKLYSEGRDDAAPKDEQDDDSR-----MLPPMRERDALKTGEVAADQHFTQP 470
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P R+SE SLVKK+EE+GIGRPSTYAS L VL+DRNYV + +R PE RGR+V+AFL+ +
Sbjct: 471 PPRFSEASLVKKMEEIGIGRPSTYASILTVLRDRNYVRLDARRFVPEDRGRLVTAFLTSF 530
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F D FTA +E +LD++S G +W+ ++ +W FS + L I V L+
Sbjct: 531 FERYVDTQFTAGLEEQLDDISGGRADWRDVMSAFWQDFSRAVDQTKDLKISDVISALDAD 590
Query: 952 FGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG--DD 1007
F + P+ R C CG G L K+ R+GA FIGC+ +P C + + + +D
Sbjct: 591 LAPHFFPAHPDGSDPRVCTACGTGRLGLKLGRYGA--FIGCSNYPTCQFTRRLVVDPKED 648
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLPKRASVS 1063
E DTL+ D +L+G P E V ++ GP+G YVQ G ED+ P+RA++
Sbjct: 649 GEADTLK-----DGMRLLGQTPGG-EDVTVRRGPWGLYVQQGEPDPEDKKAK-PRRATIP 701
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
+ D ITL+ AL LL P +G HP+ G+ I L R G V+ S+ K+
Sbjct: 702 RGIEGDKITLDQALGLLSLPRVVGIHPETGEQIEAGLGRFGPYVKMGAVYGSLDKDDDIL 761
Query: 1124 DVTLEKALEFLSGK 1137
V L +A++ L+ K
Sbjct: 762 TVGLNRAVDVLARK 775
>gi|414167212|ref|ZP_11423441.1| DNA topoisomerase I [Afipia clevelandensis ATCC 49720]
gi|410891029|gb|EKS38827.1| DNA topoisomerase I [Afipia clevelandensis ATCC 49720]
Length = 927
Score = 630 bits (1625), Expect = e-177, Method: Compositional matrix adjust.
Identities = 349/811 (43%), Positives = 495/811 (61%), Gaps = 46/811 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL SYGHVRDL A++GSV PD DF M+WE A
Sbjct: 2 NLVIVESPAKAKTINKYLGSSYEVLASYGHVRDLPAKNGSVDPDADFQMIWETDPKAAGR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL GA+ LILA+DPDREGEAI+WH++E+++Q+ AL + V RVVF+ IT+ S+
Sbjct: 62 LNDIAKALKGADKLILATDPDREGEAISWHVLEIMKQKRALKDQ-KVERVVFNAITKQSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+Q R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 TEAMQHPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F +EYW++ A L S F A L ++L +L IG+ EA+D +
Sbjct: 181 ELEIEKFVAKEYWSLLATLITPRGDS-----FEARLVGADGRKLQRLDIGTGAEAEDFRK 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +ANF V + R +P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEG+ +
Sbjct: 236 ALEAANFTVTAVEAKPARRNPQSPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I+ EA ++R +I E YG ++ P+ PR+Y K KNAQEAHEAI
Sbjct: 295 GETTGLITYMRTDGVSIAPEAVTQVRKVIGEDYGKNYVPDS-PRQYTSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFR 768
RPTD+ R PA L LD D +LY LIW RT+A QM+ A + + VDI ++ R
Sbjct: 354 RPTDLSRRPASLKARLDNDQFRLYELIWMRTVASQMESAELERTTVDIAAKAGARTLELR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ V+F GF A Y++ G ++E++ R L + G+ + ++++ QH
Sbjct: 414 ATGQVVKFDGFLAVYQE---GRDDDPDDEDSKR------LPVINQGESVKREKLDVTQHF 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP R+SE SLVK++EELGIGRPSTYAS ++VL+DR YV ++ + L+ E +GR+V AFL
Sbjct: 465 TEPPPRFSEASLVKRMEELGIGRPSTYASIIQVLKDRGYVKLEKKRLHGEDKGRVVVAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+YF+ ++ FTAD+E +LD +S WK +L D+W F + + + +V +L
Sbjct: 525 ENYFARYVEFDFTADLEEKLDKISNNEIAWKQVLADFWRDFIGAVDDIKDVRVTEVLDVL 584
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
+ G+ ++ P D R CP CG G L K +FGA F+GC+ +P C Y + L
Sbjct: 585 DAMLGEHIYE--PRADGGDPRQCPSCGTGKLNLKAGKFGA--FVGCSNYPECRY-TRPLA 639
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRAS 1061
+ D + +G P S +V +K+G +G Y+QLGE + PKRA
Sbjct: 640 ASSGQSD-----------RPLGKDPVSGLEVAVKAGRFGPYIQLGEPKDYGEDEKPKRAG 688
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + LE AL+LL P ++G HP+DG+ I + R G VRH +T AS+
Sbjct: 689 IPKNMSPADVELELALKLLSLPRDIGPHPEDGEVITAGIGRFGPFVRHGKTYASLEAGDD 748
Query: 1122 PNDVTLEKALEFLSGKDV----RRCGRPKGK 1148
+V L +A+ ++ K RR G GK
Sbjct: 749 VYNVGLNRAVTLIAEKVAKGPSRRFGADPGK 779
>gi|330994160|ref|ZP_08318088.1| DNA topoisomerase 1 [Gluconacetobacter sp. SXCC-1]
gi|329758627|gb|EGG75143.1| DNA topoisomerase 1 [Gluconacetobacter sp. SXCC-1]
Length = 910
Score = 630 bits (1624), Expect = e-177, Method: Compositional matrix adjust.
Identities = 348/794 (43%), Positives = 479/794 (60%), Gaps = 31/794 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD Y VL S+GHVRDL + GSV PD+ F+M WE +
Sbjct: 4 VVVVESPAKAKTINKYLGDNYTVLASFGHVRDLPPKDGSVLPDEGFAMKWEADERGSRQI 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GA++L LA+DPDREGEAI+WH+ ML++++ L + I V RV F+EIT+++IK
Sbjct: 64 AAIAKALRGAKHLYLATDPDREGEAISWHVRSMLEEKNLL-KGIDVQRVTFNEITKSAIK 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ RE+D L++AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 TAMAHPRELDFPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+P+EYW++ A + + F A LTH +L Q +G A +
Sbjct: 183 AEIEVFRPREYWSIIARMTTPGGAA-----FSARLTHLDGHKLEQFDLGDEARAMAAKAA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + ++ V K +R + R P P+ TST+QQ+A+ KL A M+ AQ+LYEG+ + G
Sbjct: 238 VEAGDYSVEKVERRKVRRNPPPPFTTSTMQQEASRKLGMGAQVAMRTAQQLYEGIDI-GG 296
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA IR I +G + PE+ R Y K KNAQEAHEAIR
Sbjct: 297 ETVGLITYMRTDGVQMAGEAIGAIRGHIGHSFGPEYVPEKA-RIYSTKAKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+RR PA ++ L + KLY LIW R++A QMQ A + Q+ VDI + + + R++
Sbjct: 356 PTDVRRTPADMARYLSPEQKKLYDLIWKRSVASQMQSAELDQVAVDITDRQQRVTLRATG 415
Query: 772 SRVEFLGFQAAYEDV--DAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S + F GF Y + D+ A K +++ DR +L + D + GEV QH T
Sbjct: 416 SIIAFDGFLRLYSEGRDDSPA---KGDDDQDR-----MLPPMSERDAIGRGEVTADQHFT 467
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RYSE SLVKK+EE+GIGRPSTYAS L VL+DRNYV +++R PE RGR+V+AFL+
Sbjct: 468 QPPPRYSEASLVKKMEEIGIGRPSTYASILTVLRDRNYVQLENRRFVPEDRGRLVTAFLT 527
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F D FTA +E +LD++S G W+ ++ +WS FS + L I V L+
Sbjct: 528 SFFERYVDTQFTAGLEEQLDDISGGRANWRDVMSAFWSDFSHAVDQTKDLKISDVITALD 587
Query: 950 KTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
F + R C CG G L K+ R+GA FIGC+ +P C + K +
Sbjct: 588 ADLAPYFFPEREDGQDPRVCTACGTGRLGLKLGRYGA--FIGCSNYPTCQFTRKLVVDPR 645
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLPKRASVS 1063
+ ED T D +++G P + E+V ++ GP+G YVQ G ED+ PKRA++
Sbjct: 646 EGEDA---ATLKDGMRVLGTAP-TGEEVTVRRGPWGLYVQQGEPDPEDKKAK-PKRATIP 700
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
D D ITLE A+ LL P +G HP+ G+PI L R G V+ S+ K+
Sbjct: 701 RGLDGDKITLEQAVGLLSLPRIVGIHPELGEPIEAGLGRFGPYVKMGAVYGSLDKDDDVL 760
Query: 1124 DVTLEKALEFLSGK 1137
V L +A++ L+ K
Sbjct: 761 TVGLNRAVDALAKK 774
>gi|423713935|ref|ZP_17688195.1| DNA topoisomerase I [Bartonella vinsonii subsp. arupensis OK-94-513]
gi|395421741|gb|EJF87977.1| DNA topoisomerase I [Bartonella vinsonii subsp. arupensis OK-94-513]
Length = 853
Score = 630 bits (1624), Expect = e-177, Method: Compositional matrix adjust.
Identities = 346/803 (43%), Positives = 483/803 (60%), Gaps = 29/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+V+ S+GHVRDL A+ GSV PD DFSM W V SAA
Sbjct: 2 NIVIVESPAKAKTINKYLGSQYKVVASFGHVRDLPAKDGSVLPDQDFSMKWSVDSAATKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L + V RVVF+ IT+ S+
Sbjct: 62 LNEIAKAVKEADSLILATDPDREGEAISWHILDILRQKKVLKDK-PVKRVVFNAITKKSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDR
Sbjct: 121 LDAMSNPRDIDTSLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F ++YW++ L ++ F A LT F K++ +L I S +A I
Sbjct: 181 ESEIEHFIKEDYWSITTNL-----KTIRNDDFQARLTMFNQKKIGKLDIQSQEQADQIRL 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A ++ + + R P+ TSTLQQ A++KL FSA+ TM++AQKLYEGV++ +
Sbjct: 236 MLEGAKYRTLSVEAKPTKRNPSPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVEM-N 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA + R +I E +G + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GEMAGLITYMRTDGVQIAPEAIESARKVIHETFGKDYIPEK-PRFYSTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES--IVFR 768
RPTD +R P + LD D KLY LIW R +A QM A + + V+I E R
Sbjct: 354 RPTDFQRSPDQVRNFLDSDQAKLYELIWKRAIASQMCSAEIERTTVEIEALKEENYANLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S + F GF + Y D + EEN L + G+ L +VE QH
Sbjct: 414 ATGSVIRFDGFISVYTD--------QREEENSEENETTRLPQINAGESLTKEKVEAIQHS 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KKLEELGIGRPSTYASTL L DR Y+ + R L P+ +GR+V+AFL
Sbjct: 466 TEPPPRYSEASLIKKLEELGIGRPSTYASTLSTLCDRGYIAIDKRKLIPDAKGRIVTAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F+ +Y FTAD+E +LD +S G WK ++ D+W F++ + L I V +L
Sbjct: 526 ENFFNRYVEYGFTADLEEKLDLISDGKLSWKDVMRDFWDEFNASIINIKELRITNVLDVL 585
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
T F + RSCP+C G L K+ R+GA F+GC+ +P C Y + L +
Sbjct: 586 NVTLAPLAFPLREDGSDVRSCPLCTNGQLSLKLGRYGA--FVGCSNYPECKY-TRQLGTE 642
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
EE+ RN DEP ++G P + + + L++G +G Y+QLGE + KR +
Sbjct: 643 TGEENDTMRN---DEPLMLGIDPKTGQDISLRNGRFGPYIQLGESKEA---KRVGLPKEW 696
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
++ITL+ AL L+ P +G HP+ G+ I + R G + H A + + + D+
Sbjct: 697 KAENITLDKALALISLPREIGIHPETGKMITATIGRYGPYLSHDGKSAPLLQADEVFDIG 756
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
+ +A+ L+ K + R + P
Sbjct: 757 INRAVTVLAEKQGNKTTRSRTTP 779
>gi|456354784|dbj|BAM89229.1| DNA topoisomerase I [Agromonas oligotrophica S58]
Length = 925
Score = 630 bits (1624), Expect = e-177, Method: Compositional matrix adjust.
Identities = 342/796 (42%), Positives = 489/796 (61%), Gaps = 42/796 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL S+GHVRDL A++GSV PD++F M+WEV A
Sbjct: 2 NIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDENFRMIWEVDPKAAGR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I +L GA+ LILA+DPDREGEAI+WH++E+L+++ AL + + RVVF+ IT+ ++
Sbjct: 62 LNDIAKSLKGADRLILATDPDREGEAISWHVLEVLKEKRALKDQ-KIERVVFNAITKQAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 SEAMKHPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F P+EYW++ A L DTF A L K++ +L IG+ EA+D +Q
Sbjct: 181 ELEIEKFVPREYWSLIATLATPRG---DTFE--ARLVGADGKKIQRLDIGTGVEAEDFKQ 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+N+A++ V + R P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEG+ +
Sbjct: 236 ALNAASYTVATVDAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I+ EA ++R +I E YG+ + P+ PR+Y K KNAQEAHEAI
Sbjct: 295 GETTGLITYMRTDGVQIAPEAITQVRKVIGEIYGNKYVPDS-PRQYQAKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD+ R PA L LD+D KLY LIW+RT+A QM+ A + + VDI ++ R
Sbjct: 354 RPTDLSRKPAELRKRLDDDQAKLYELIWTRTIASQMESAELERTTVDIIAKAGARTLELR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ ++F GF A Y+ E +++ E L + DPL + + QH
Sbjct: 414 ATGQVIKFDGFLALYQ----------EGRDDEEDEDSRRLPQMSPNDPLKRQNLAVTQHF 463
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP R+SE SLVK++EELGIGRPSTYAS L VL+ R YV ++ + L+ E +GR+V AFL
Sbjct: 464 TEPPPRFSEASLVKRMEELGIGRPSTYASILDVLKARGYVKLEKKRLHGEDKGRVVIAFL 523
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F +Y FTAD+E +LD +S W+ +L D+W+ F + L + QV L
Sbjct: 524 ENFFRRYVEYDFTADLEEQLDRISNNEIAWQQVLKDFWTGFIGAVDDIKDLRVAQVLDSL 583
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
++ G ++ P +D R CP CG G L K +FGA F+GC+ +P C Y
Sbjct: 584 DEMLGPHIYP--PREDGGDVRQCPTCGTGRLNLKAGKFGA--FVGCSNYPECRYTR---- 635
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRAS 1061
L ++ +++G P + V +K+G +G Y+QLGE + G PKRA
Sbjct: 636 -------PLAADSEAAADRILGQDPDTGRDVTVKAGRFGPYIQLGEQKDYAEGEKPKRAG 688
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + LE AL+LL P +G HP+ G PI L R G V+H +T AS+ +
Sbjct: 689 IPKGTQPSDVDLELALKLLSLPREIGRHPETGLPITAGLGRFGPFVKHDKTYASLEAGDE 748
Query: 1122 PNDVTLEKALEFLSGK 1137
D+ L +A+ ++ K
Sbjct: 749 VFDIGLNRAVTLIAEK 764
>gi|433775131|ref|YP_007305598.1| DNA topoisomerase I, bacterial [Mesorhizobium australicum WSM2073]
gi|433667146|gb|AGB46222.1| DNA topoisomerase I, bacterial [Mesorhizobium australicum WSM2073]
Length = 873
Score = 630 bits (1624), Expect = e-177, Method: Compositional matrix adjust.
Identities = 354/804 (44%), Positives = 487/804 (60%), Gaps = 36/804 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M W V +A+ L
Sbjct: 3 VVVVESPAKAKTINKYLGRNYKVLASFGHVRDLPAKDGSVRPDEDFAMSWAVDTASGKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A+ LILA+DPDREGEAI+WH++E+L+Q+ AL + V+RVVF+ IT++S+
Sbjct: 63 ADIAKAVKDADGLILATDPDREGEAISWHVLEVLKQKRALKDK-PVSRVVFNAITKSSVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+IDA LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDRE
Sbjct: 122 EAMANPRQIDAPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F +EYW + A+L + + F A LT F+ K+L +L I + +A DI+
Sbjct: 182 SEIERFIREEYWQISALLGTPRNET-----FEARLTAFERKKLQKLDIANKAQADDIKAM 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A F+ + + R P+ TSTLQQ A++ L FSAT TM++AQ+LYEG+++ G
Sbjct: 237 LEGATFKALSVEAKPTKRNPGPPFTTSTLQQAASSGLGFSATRTMQVAQRLYEGMEI-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA R I + +G + PE+ PR+Y K KNAQEAHEAIR
Sbjct: 296 ETTGLITYMRTDGVQMAPEAIDAARDAIAKEFGPKYLPEK-PRQYTAKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVFRS 769
PTD R PA + LD D ++LY LIW R +A QMQ A + + V+I N + R+
Sbjct: 355 PTDFMRTPASVRQYLDSDQMRLYELIWKRAIASQMQSAEIERTTVEIEALNGARTAELRA 414
Query: 770 SCSRVEFLGFQAAYEDV---DAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
S V F GF AAY D DA E+EEN R L +++G+ L + Q
Sbjct: 415 VGSVVRFDGFIAAYTDQKEDDA------EDEENRR------LPEIRSGEQLARRAINATQ 462
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RYSE SL+KKLEELGIGRPSTY + LK L+DR+YVT+ R L P+ +GR++SA
Sbjct: 463 HTTEPPPRYSEASLIKKLEELGIGRPSTYTAILKTLEDRDYVTIDKRRLVPQAKGRLLSA 522
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL +F +Y FTA +E +LD +S G WK +L D+W FS + L + V
Sbjct: 523 FLESFFERYVEYDFTASLEEKLDEISDGKLAWKDVLRDFWKDFSGAVADIKELRVTDVLD 582
Query: 947 MLEKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
L + +F + + R CP CG G L K+ +FGA F+GC+ +P C++ +
Sbjct: 583 ALNEELAPLVFPAREDGSNPRICPKCGTGNLSLKLGKFGA--FVGCSNYPECSFTRQL-- 638
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSH 1064
D + D K++G P + E++ L+SG +G Y+Q G+ G KR+S+
Sbjct: 639 -GDAANPNGENGGGEDGTKVLGKDPYTAEEITLRSGRFGPYIQRGD---GKEAKRSSLPK 694
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
DSI E AL LL P ++G HP+ G+ I L R G V H T A++
Sbjct: 695 GWTPDSIDHEKALALLGLPRDVGKHPESGKMISAGLGRYGPFVLHDGTYANLDSIEDVFS 754
Query: 1125 VTLEKALEFLSGKDVR-RCGRPKG 1147
+ L +A+ ++ K + + GR G
Sbjct: 755 IGLNRAVTVIAEKQSKGKGGRNGG 778
>gi|337268582|ref|YP_004612637.1| DNA topoisomerase I [Mesorhizobium opportunistum WSM2075]
gi|336028892|gb|AEH88543.1| DNA topoisomerase I [Mesorhizobium opportunistum WSM2075]
Length = 870
Score = 629 bits (1623), Expect = e-177, Method: Compositional matrix adjust.
Identities = 350/799 (43%), Positives = 483/799 (60%), Gaps = 35/799 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M W V +A+ L
Sbjct: 3 VVVVESPAKAKTINKYLGKNYKVLASFGHVRDLPAKDGSVRPDEDFAMSWAVDTASGKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A+ LILA+DPDREGEAI+WH++E+L+Q+ AL + V+RVVF+ IT++S+
Sbjct: 63 ADIAKAVKDADGLILATDPDREGEAISWHVLEVLKQKRALKDK-PVSRVVFNAITKSSVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+IDA LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDRE
Sbjct: 122 EAMANPRQIDAPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F +EYW + A+L + + F A LT F+ K+L +L I + +A D++
Sbjct: 182 SEIERFIREEYWQIAAILGTPRNEA-----FEARLTAFERKKLQKLDISNKAQADDVKAM 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A F+ + + R P+ TSTLQQ A++ L FSAT TM++AQ+LYEG+++ G
Sbjct: 237 LEGAAFKALSVEAKPTKRNPGPPFTTSTLQQAASSGLGFSATRTMQVAQRLYEGMEI-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA R I + +G + PE+ PR Y K KNAQEAHEAIR
Sbjct: 296 ETTGLITYMRTDGVQMAPEAIDAARDAIAKEFGPKYLPEK-PRVYTTKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVFRS 769
PTD R PA + LD D ++LY LIW R ++ QMQPA + + V+I N + R+
Sbjct: 355 PTDFMRTPASVRQYLDSDQMRLYELIWKRAISSQMQPAEIERTTVEIEAVNGSRTAELRA 414
Query: 770 SCSRVEFLGFQAAYEDV---DAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
S V F GF AAY D DA E+EEN R L ++ G+ L + Q
Sbjct: 415 VGSVVRFDGFIAAYTDQKEDDA------EDEENRR------LPEIRVGEQLARQAINATQ 462
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RYSE +L+KKLEELGIGRPSTY + LK L+DR+YVT+ R L P+ +GR++SA
Sbjct: 463 HTTEPPPRYSEATLIKKLEELGIGRPSTYTAILKTLEDRDYVTIDKRRLVPQAKGRLLSA 522
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL +F +Y FTA +E +LD +S G WK +L D+W FS + L + V
Sbjct: 523 FLESFFERYVEYDFTASLEEKLDEISDGKLAWKDVLRDFWKDFSGAVADIKELRVTDVLD 582
Query: 947 MLEKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
L + +F + + R CP CG G L K+ +FGA F+GC+ +P C++ +
Sbjct: 583 ALNEELAPLVFPAREDGSNPRICPKCGTGNLSLKLGKFGA--FVGCSNYPECSFTRQL-- 638
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSH 1064
D + D K++G P + E++ L+SG +G Y+Q G+ G KR+S+
Sbjct: 639 -GDAANPNGENGGGEDGTKVLGKDPYTAEEITLRSGRFGPYIQRGD---GKEAKRSSLPK 694
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
+SI E AL LL P ++G HP+ G+ I L R G V H T A+V
Sbjct: 695 GWTPESIDHEKALALLSLPRDVGKHPESGKMISAGLGRYGPFVLHDGTYANVDSIEDVFS 754
Query: 1125 VTLEKALEFLSGKDVRRCG 1143
+ L +A+ ++ K + G
Sbjct: 755 IGLNRAVTVIAEKQSKAKG 773
>gi|395791137|ref|ZP_10470595.1| DNA topoisomerase I [Bartonella alsatica IBS 382]
gi|395408500|gb|EJF75110.1| DNA topoisomerase I [Bartonella alsatica IBS 382]
Length = 862
Score = 629 bits (1623), Expect = e-177, Method: Compositional matrix adjust.
Identities = 349/801 (43%), Positives = 493/801 (61%), Gaps = 31/801 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+V+ S+GHVRDL A+ GSV PD DFSM W++ S A
Sbjct: 2 NIVIVESPAKAKTINKYLGSQYKVVASFGHVRDLPAKDGSVLPDQDFSMKWDIDSVAAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L +N + RVVF+ IT+ S+
Sbjct: 62 LNEIAKAVKEADSLILATDPDREGEAISWHILDVLRQKKVL-KNKPIKRVVFNAITKKSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDR
Sbjct: 121 LDAMNNPRDIDTSLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F ++YW++ ++ F A LT K++ +L I S +A I
Sbjct: 181 ESEIEHFIKEDYWSIITHF-----KTIRNDGFKAKLTMLNQKKIGKLYIQSQEQADQICL 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A ++++ + ++KNP+P + TSTLQQ A++KL FSA+ TM++AQKLYEGV++
Sbjct: 236 ILEQAKYRILSVEAKP-IKKNPSPPFTTSTLQQAASSKLGFSASRTMQIAQKLYEGVEI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
+G AGLITYMRTDG+ I+ EA R +I E +GS++ PE+ PR Y K KNAQEAHEA
Sbjct: 294 NGEMAGLITYMRTDGVQIAPEAIDSARKVIHESFGSNYIPEK-PRLYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI-GNADESIV-F 767
IRPTD +R P + LD D KLY LIW RT+A QM A + + V+I E++
Sbjct: 353 IRPTDFQRTPNQVRNFLDNDQAKLYELIWKRTLASQMCSAEIERTTVEIEAQQGENLANL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S + F GF + Y D + EEN+ L + G+ L +VE QH
Sbjct: 413 RATGSVIRFDGFISIYSD--------QLEEENNEENETTRLPQMNAGEVLKKEKVEAIQH 464
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KKLEELGIGRPSTYASTL L DR Y+ + R L P+ +GR+V+AF
Sbjct: 465 TTEPPPRYSESSLIKKLEELGIGRPSTYASTLSTLCDRGYIIIDKRKLIPDAKGRIVTAF 524
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L ++F+ +Y FTAD+E +LD +S G WK ++ D+W F++ T + L I V +
Sbjct: 525 LENFFNRYVEYGFTADLEEKLDLISDGKLSWKDVMRDFWDGFNASITNIKELRITNVLDV 584
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L T F + RSCP+C G L K+ R+GA F+GC+ +P C Y + L
Sbjct: 585 LNVTLAPLAFPIREDGSDVRSCPLCTNGKLSLKLGRYGA--FVGCSNYPECKY-TRQLGT 641
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
D EE+ + RN DEP ++G P + + + L++G +G Y+QLGE + KR +
Sbjct: 642 DVGEENEVIRN---DEPIMLGVDPKTGKDISLRNGRFGPYIQLGESKEA---KRVGLPKE 695
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
++ITL+ AL LL P +G HP+ G+ I + R G + H T + + D+
Sbjct: 696 WQAENITLDKALALLSLPRAIGTHPETGKMITATIGRYGPYLTHNGTSTPLLHADEVFDI 755
Query: 1126 TLEKALEFLSGKDVRRCGRPK 1146
+ +A+ L+ K + R K
Sbjct: 756 GINRAVTVLAEKQENKTMRSK 776
>gi|222148309|ref|YP_002549266.1| DNA topoisomerase I [Agrobacterium vitis S4]
gi|221735297|gb|ACM36260.1| DNA topoisomerase I [Agrobacterium vitis S4]
Length = 904
Score = 629 bits (1623), Expect = e-177, Method: Compositional matrix adjust.
Identities = 347/807 (42%), Positives = 486/807 (60%), Gaps = 36/807 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M+WEV +A+
Sbjct: 2 NVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDTASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ GA+ L LA+DPDREGEAI+WH++++L+++ + + V RVVF+ IT+ ++
Sbjct: 62 MKDIADAMKGADALFLATDPDREGEAISWHVLDLLKKKKVIGDK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ A R+ID +LV AYLARRA+DYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMAAPRDIDGDLVDAYLARRAMDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL S+G+ A ++
Sbjct: 181 ENEIERFVSEEYWNLSALLKTPRGDE-----FLARLVSADGKRLQARSVGNGDMANRLKD 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++ AN+ V+++ + V++NP+P + TSTLQQ A++KL FSA+ TM++AQKLYEGV +
Sbjct: 236 LLDGANY-VVESIEAKPVKRNPSPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA + RS I +++G + PE+ PR Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIEAARSAITQQFGPRYMPEK-PRFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D L+LY L+W R +A QM A + + +I A E
Sbjct: 353 IRPTDFNRTPDQVRRYLDADQLRLYDLVWKRGIASQMASAEIERTTAEILADKAGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D +E E++D + L + + L +V QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------HREEGEKSDDDDEDGRLPEINAREALAKQKVNATQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE +L+KK+EELGIGRPSTYA+TLK L DR YV + R L PE +GR+V+AF
Sbjct: 467 FTEPPPRYSEATLIKKMEELGIGRPSTYAATLKTLSDREYVVIDKRKLIPEAKGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F+ +Y FTAD+E +LD +SAG WK +L ++W F + + L + V
Sbjct: 527 LESFFTRYVEYDFTADLEEKLDKISAGELNWKDVLREFWQNFFAQIEGTKELRVTNVLDA 586
Query: 948 LEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
L + +F P ++ R C VCG G L K+ ++GA F+GC+ +P CN+ +
Sbjct: 587 LNEALAPLVF---PKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNF-TRQ 640
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
L D E N EPK +G P + E++ L+SG +G YVQ G+ G KR+S+
Sbjct: 641 LSADGGTEAEAVGN----EPKALGEDPTTGEQITLRSGRFGPYVQRGD---GKEAKRSSL 693
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+ + AL LL P +G HP+ G+ + L R G V H T A++
Sbjct: 694 PKGWSPTDVDFDKALSLLSLPREVGLHPETGKMMTAGLGRYGPFVLHDGTYANLDGIEDV 753
Query: 1123 NDVTLEKALEFLSGKDVRRCGRPKGKP 1149
+ L +A+ L+ K GR + P
Sbjct: 754 LTIGLNRAVTVLAEKQANPGGRGRAAP 780
>gi|254474170|ref|ZP_05087561.1| DNA topoisomerase I, putative [Pseudovibrio sp. JE062]
gi|211956700|gb|EEA91909.1| DNA topoisomerase I, putative [Pseudovibrio sp. JE062]
Length = 931
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 355/807 (43%), Positives = 489/807 (60%), Gaps = 54/807 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VV+VES KAK I YLG Y VL SYGHVRDL + GSV PDDDF+M W V S +
Sbjct: 2 NVVIVESPAKAKTINKYLGKDYTVLASYGHVRDLPPKDGSVLPDDDFAMSWSVDSKSQKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A+ LILA+DPDREGEAI+WH++E+L+++ + ++ + RVVF+ IT++SI
Sbjct: 62 LSEIASAVKEADRLILATDPDREGEAISWHVLEVLKKK-RVLKDKKIERVVFNAITKSSI 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ RE+D LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+C R
Sbjct: 121 LEAMKNPRELDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCQR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+ QEYW++ A L+ E+ + A LT F +++ +L I + EA I+Q
Sbjct: 181 ENEIETFQSQEYWSILANLNTPENAPVQ-----ARLTGFDGQKITRLDIKNEQEATTIKQ 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++ A+FQV N + R+NP P+ TSTLQQ+A+ KL F+A TM++AQKLYEG +
Sbjct: 236 MLDGASFQV-SNVESKPQRRNPYAPFTTSTLQQEASRKLGFAAARTMQVAQKLYEGANI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ I+ EA R +I RYG + PE+ PR Y K KNAQEAHEA
Sbjct: 294 GGETTGLITYMRTDGVQIAQEAITSARGVIASRYGDEYVPEK-PRMYSSKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVF 767
IRPTD+ R P ++ LDED +LY LIW RT+A QM+ A + + VDI N +
Sbjct: 353 IRPTDLTRHPRDMAKFLDEDGARLYELIWKRTIASQMESAVLERTTVDIDAVNGAKKAAL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+S S V F GF Y+ E ++++ E L + GD L +E QH
Sbjct: 413 RASGSVVRFDGFLTLYQ----------EGKDDEEDEESKRLPPMTRGDSLGRKGIEANQH 462
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP R++E +LVKK+EELGIGRPSTYA+TL+ L+DR YV + + L P+ +GR+V+AF
Sbjct: 463 FTEPPPRFTEATLVKKMEELGIGRPSTYAATLQTLRDRGYVELDKKRLIPQDKGRLVTAF 522
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F+ +Y FTA +E +LD +SAG EWK +L D+W+ F C +V
Sbjct: 523 LEDFFNRYVEYDFTASLEDQLDKISAGDLEWKAVLRDFWNPFHEICDEVIKRSNTEVLDA 582
Query: 948 LEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQH--------- 993
L +T +F P+K+ R CP C G L KVSRFGA F+GC+ +
Sbjct: 583 LNETLKAHVF---PDKEDGSDPRKCPKCDTGRLSLKVSRFGA--FVGCSNYNKDKKDGKE 637
Query: 994 -----PRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQL 1048
P C+Y + G D + D P+++G P + +V L++G +G YVQL
Sbjct: 638 PNENPPHCDYTRQLTSGGDSDA-----GAAADGPQVLGIDPETGLEVSLRTGRFGPYVQL 692
Query: 1049 GEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVR 1108
GE+ PKR+S+ V + LE AL+LL P +G HP+DG+ I L R G V
Sbjct: 693 GEEAK---PKRSSLPRGWSVADLDLEKALQLLSLPREVGTHPEDGKTISAGLGRFGPFVL 749
Query: 1109 HRRTIASVPKNMKPNDVTLEKALEFLS 1135
H T A++ + V + +A+ L+
Sbjct: 750 HDGTYANLDSPDEVFSVGINRAVTLLA 776
>gi|319407292|emb|CBI80933.1| DNA topoisomerase I [Bartonella sp. 1-1C]
Length = 863
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 343/799 (42%), Positives = 487/799 (60%), Gaps = 29/799 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG Y+V+ S+GHVRDL+A+ GSV PD DF+M W++ +A+ L
Sbjct: 3 IVIVESPAKAKTINKYLGSQYKVIASFGHVRDLSAKDGSVLPDKDFAMKWDIDTASAKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L++ V RVVF+ IT+ S+
Sbjct: 63 NEIAKAVKEADSLILATDPDREGEAISWHILDVLKQKKVLNDQ-RVKRVVFNAITKKSVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R+ID +LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL +IC+RE
Sbjct: 122 DAMKNPRDIDISLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRIICNRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++F ++YW++ L +L F A L F +L +L I S +A I
Sbjct: 182 SEIEKFIKEDYWSITTYL-----KTLQNNIFHARLIEFNHNKLGKLDIQSQKQADQILFM 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ AN++ + + + R P+ TSTLQQ A++KL FSA+ TM++AQKLYEGV++ +G
Sbjct: 237 LEKANYRTLSIEAKPIKRNPSPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVEI-NG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AGLITYMRTDG+ ++ EA R I + +G ++ PE+ PR Y K KNAQEAHEAIR
Sbjct: 296 ETAGLITYMRTDGVQMASEAIDAARKAIIDSFGRNYLPEK-PRFYSTKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES--IVFRS 769
PTD R P + LD D KLY LIW R +A QM A + + V+I + E R+
Sbjct: 355 PTDFIRHPNQVCNFLDSDQAKLYELIWKRAIASQMCSAEIERTTVEIEASQEENHAHLRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S + F GF +AY D + EEN +A L + G+ L +VE +H T
Sbjct: 415 TGSVIRFDGFISAYTD--------PKEEENSDEDASTRLPQINVGESLTKEKVESVKHTT 466
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE +L+KKLEELGIGRPSTYASTL L DR Y+ R L P+ +GR+V+AFL
Sbjct: 467 EPPPRYSESALIKKLEELGIGRPSTYASTLSTLCDRGYIITDKRKLIPDVKGRIVTAFLE 526
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
++F+ +Y FTA +E +LD +S G WK +L D+W F++ T Q L I V +L
Sbjct: 527 NFFNRYVEYGFTAALEEKLDLISDGKLSWKDVLRDFWDEFNASITSIQELRIMNVLDVLN 586
Query: 950 KTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
T F + + RSCP+C G L K+ R+GA F+GC+ +P C Y + G D
Sbjct: 587 VTLAPLAFPTREDGSDCRSCPLCKNGQLSLKLGRYGA--FVGCSNYPECKYTCQ--LGSD 642
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKD 1067
EE + + + DEP ++G P + + + L+ G +G Y+QLGE G KRAS+
Sbjct: 643 TEEQS--KTVHNDEPVMLGIDPETGKDISLRHGRFGPYIQLGE---GKEIKRASLPKEWH 697
Query: 1068 VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
+++I + AL LL P +G HP+ G+ I + R G + H ++ + D+ +
Sbjct: 698 IENIDFDKALALLSLPRKVGIHPETGKIITAAIGRYGPYLAHDGQYTNLFSTDEVFDIGI 757
Query: 1128 EKALEFLSGKDVRRCGRPK 1146
+A+ L+ K R K
Sbjct: 758 NRAVTILAEKKESTTNRRK 776
>gi|299135146|ref|ZP_07028337.1| DNA topoisomerase I [Afipia sp. 1NLS2]
gi|298590123|gb|EFI50327.1| DNA topoisomerase I [Afipia sp. 1NLS2]
Length = 920
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 347/811 (42%), Positives = 490/811 (60%), Gaps = 46/811 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL SYGHVRDL A++GSV PD +F M+WE A +
Sbjct: 2 NLVIVESPAKAKTINKYLGSSYEVLASYGHVRDLPAKNGSVDPDANFQMIWETDPKAASR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL GA+ LILA+DPDREGEAI+WH++E+++Q+ AL + + RVVF+ IT+ SI
Sbjct: 62 LNDIAKALKGADKLILATDPDREGEAISWHVLEVMKQKRALKDQ-KIERVVFNAITKQSI 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+Q REID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 TEAMQHPREIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F P+EYW++ A L S F A L K++ +L IGS EA+D ++
Sbjct: 181 ELEIEKFVPREYWSLVATLLTPRGDS-----FEARLVGADGKKIQRLDIGSGAEAEDFKK 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ + + V + R P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEG+ +
Sbjct: 236 ALENGTYSVALVEAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I+ EA +R +I E YG+++ P PR+Y K KNAQEAHEAI
Sbjct: 295 GETTGLITYMRTDGVSIAPEAVPAVRKVIGEDYGNNYVPST-PRQYTSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD+ R PA L LD D +LY LIW RT+A QM+ A + + VDI ++ R
Sbjct: 354 RPTDVSRRPAKLKARLDNDQYRLYELIWMRTVASQMESAELERTTVDITAKAGSRTLELR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+S V+F GF A Y++ G ++EE+ R L ++ G+ L + + QH
Sbjct: 414 ASGQVVKFDGFLAVYQE---GRDDDPDDEESRR------LPAMSEGEVLKRESLAVTQHF 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP R+SE SLVK++EELGIGRPSTYAS L+VL+DR YV ++ + L E +GR+V AFL
Sbjct: 465 TEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVKLEKKRLSAEDKGRVVVAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+FS ++ FTAD+E +LD +S WK +L D+W F + + + +V +L
Sbjct: 525 EKFFSRYVEFDFTADLEEKLDKISNNEIAWKQVLKDFWRDFMGAVDDIKDVRVSEVLDVL 584
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
+ G+ ++ P D R CP CG G L K +FGA F+GC+ +P C Y
Sbjct: 585 DAMLGEHIYE--PRADGGDPRQCPSCGTGKLNLKAGKFGA--FVGCSNYPECRYTRPLA- 639
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRAS 1061
+++ +++G P + V +K+G +G Y+QLGE + PKRA
Sbjct: 640 -----------SSSASNDRVLGKDPKTDLDVAVKAGRFGPYIQLGEPKDYAEDEKPKRAG 688
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + L+ AL+LL P ++G HP+DG+ I + R G VRH +T AS+
Sbjct: 689 IPKNMSPADVELDLALKLLSLPRDVGPHPEDGEIITAGIGRFGPFVRHGKTYASLEAGDD 748
Query: 1122 PNDVTLEKALEFLSGKDV----RRCGRPKGK 1148
++ L +A+ ++ K RR G GK
Sbjct: 749 VYNIGLNRAVTLIAEKIAKGPSRRFGADPGK 779
>gi|121601698|ref|YP_989131.1| DNA topoisomerase I [Bartonella bacilliformis KC583]
gi|421760941|ref|ZP_16197749.1| DNA topoisomerase I subunit omega [Bartonella bacilliformis INS]
gi|120613875|gb|ABM44476.1| DNA topoisomerase I [Bartonella bacilliformis KC583]
gi|411173827|gb|EKS43867.1| DNA topoisomerase I subunit omega [Bartonella bacilliformis INS]
Length = 869
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 343/799 (42%), Positives = 477/799 (59%), Gaps = 29/799 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG Y+V+ S+GHVRDL+A+ GSV PD DFSM W+V +A+ L
Sbjct: 3 IVIVESPAKAKTINKYLGSQYKVIASFGHVRDLSAKDGSVLPDKDFSMKWDVDTASAKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A +LILA+DPDREGEAI+WHI+++L Q+ L++ V RVVF+ IT+ S+
Sbjct: 63 NEIAKAVKEANSLILATDPDREGEAISWHILDVLNQKKILNDK-PVKRVVFNAITKQSVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDRE
Sbjct: 122 DAMNNPRDIDVSLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
E + F ++YW++ L + F A L F K+L++L I S +A I
Sbjct: 182 SEREHFVKEDYWSITTYLKTPRNDV-----FQARLIEFNQKKLSKLDIQSQEQANQIRLM 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A + + + R P+ TSTLQQ +++KL FSA+ TM++AQKLYEGV++ +G
Sbjct: 237 LEEAEYCTLSVEAKPTKRNPSPPFTTSTLQQASSSKLGFSASRTMQIAQKLYEGVEM-NG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AGLITYMRTDG+ I+ EA R I +G+++ PE+ PR Y K KNAQEAHEAIR
Sbjct: 296 ETAGLITYMRTDGVQIAPEAIDSARRAISNSFGNNYLPEK-PRFYSTKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES--IVFRS 769
PTD +R P + LD D KLY LIW R +A QM+ A + + V+I E R+
Sbjct: 355 PTDFKRHPDQVRNFLDNDQAKLYELIWKRAIASQMRSAEIERTTVEIKAVQEENYANLRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S F GF A Y D + +E N + A L + + L ++E QH T
Sbjct: 415 TGSVTRFDGFIAVYTD--------QRDETNGDEDDLARLPPINVNEILTKEKIETAQHTT 466
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
PP RYSE SL+KKLEELGIGRPSTYASTL L DR Y+ + R L P+ +GR+V+AFL
Sbjct: 467 DPPPRYSEASLIKKLEELGIGRPSTYASTLATLCDRGYIIIDKRQLTPDAKGRIVTAFLE 526
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
++F+ +Y FTA++E +LD +S G WK +L D+W F++ T Q L I V +L
Sbjct: 527 NFFNRYVEYGFTANLEEKLDLISDGKLFWKDVLRDFWDEFNASVTNIQELRITNVLDVLN 586
Query: 950 KTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
T F + + RSC +C G L K+ R+GA F+GC+ +P C Y K L D
Sbjct: 587 TTLAPLAFPTREDSSDPRSCSLCKHGQLSLKLGRYGA--FVGCSNYPECKY-TKQLGTDA 643
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKD 1067
EE N DEP ++G P + + + L++G +G Y+QLGE G KR+ +
Sbjct: 644 GEEREAAHN---DEPVILGVDPETGKDIFLRNGRFGPYIQLGE---GKEAKRSGLPKGWK 697
Query: 1068 VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
+++ L+ AL LL P +G HP+ GQ I + R G + H R A++ D+ +
Sbjct: 698 TENVNLDKALSLLSLPREVGIHPETGQMITATIGRYGPYLTHDRKYAALSNVDDVFDIGI 757
Query: 1128 EKALEFLSGKDVRRCGRPK 1146
+A+ L+ + + R K
Sbjct: 758 NRAVTVLAEQKENKANRGK 776
>gi|319783826|ref|YP_004143302.1| DNA topoisomerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317169714|gb|ADV13252.1| DNA topoisomerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 878
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 351/804 (43%), Positives = 486/804 (60%), Gaps = 36/804 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y+VL S+GH+RDL A+ GSVRPD+DF+M W V +A+ L
Sbjct: 3 VVVVESPAKAKTINKYLGKNYKVLASFGHIRDLPAKDGSVRPDEDFAMSWAVDTASGKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A+ LILA+DPDREGEAI+WH++E+L+Q+ AL + V+RVVF+ IT++S+
Sbjct: 63 ADIAKAVKDADGLILATDPDREGEAISWHVLEVLKQKRALKDK-PVSRVVFNAITKSSVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+IDA LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDRE
Sbjct: 122 EAMANPRQIDAPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F +EYW + A+L + + F A LT F K+L +L I + +A DI+
Sbjct: 182 SEIERFIREEYWQIAALLGTPRNEN-----FEARLTAFDRKKLQKLDISNKAQADDIKSM 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A F+ + + R P+ TSTLQQ A++ L FSA+ TM++AQ+LYEG+++ G
Sbjct: 237 LEGATFKAVSVEAKPTKRNPGPPFTTSTLQQAASSGLGFSASRTMQVAQRLYEGMEI-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA R I + +G + PE+ PR+Y K KNAQEAHEAIR
Sbjct: 296 ETTGLITYMRTDGVQMAPEAIDAARDAIAKEFGPKYLPEK-PRQYTAKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVFRS 769
PTD R PA + LD D ++LY LIW R +A QMQPA + + +I N + R+
Sbjct: 355 PTDFMRTPASVRQYLDSDQMRLYELIWKRAIASQMQPAEIERTTAEIEAVNGSRTAELRA 414
Query: 770 SCSRVEFLGFQAAY---EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
S V F GF AAY +D DA E+EEN R L ++ G+ L + Q
Sbjct: 415 IGSVVRFDGFIAAYTDQKDDDA------EDEENRR------LPEIRAGEQLARQAINATQ 462
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RYSE SL+KKLEELGIGRPSTY + LK L+DR+YVT+ R L P+ +GR++SA
Sbjct: 463 HTTEPPPRYSEASLIKKLEELGIGRPSTYTAILKTLEDRDYVTIDKRRLVPQAKGRLLSA 522
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL +F +Y FTA +E +LD +S G WK +L D+W FS + L + V
Sbjct: 523 FLESFFKRYVEYDFTASLEEKLDEISDGKLAWKDVLRDFWKDFSGAVADIKELRVTDVLD 582
Query: 947 MLEKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
L + +F + + R CP CG G L K+ +FGA F+GC+ +P C++ +
Sbjct: 583 ALNEELAPLVFPAREDGSNPRICPKCGTGNLSLKLGKFGA--FVGCSNYPECSFTRQL-- 638
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSH 1064
D + D K+IG P + E++ L+SG +G Y+Q G+ G KR+S+
Sbjct: 639 -GDAANPNGENGGGEDGTKVIGKDPYTSEEITLRSGRFGPYLQRGD---GKEAKRSSLPK 694
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
+SI E AL LL P ++G HP+ + I L R G V H T A++
Sbjct: 695 GWTAESIDHEKALALLSLPRDVGQHPETAKMISAGLGRYGPFVLHDGTYANLESIEDVFS 754
Query: 1125 VTLEKALEFLSGKDVR-RCGRPKG 1147
+ L +A+ ++ K ++ + GR G
Sbjct: 755 IGLNRAVSVIAEKQLKGKGGRNGG 778
>gi|395786258|ref|ZP_10465985.1| DNA topoisomerase I [Bartonella tamiae Th239]
gi|423716849|ref|ZP_17691039.1| DNA topoisomerase I [Bartonella tamiae Th307]
gi|395422556|gb|EJF88752.1| DNA topoisomerase I [Bartonella tamiae Th239]
gi|395428923|gb|EJF94998.1| DNA topoisomerase I [Bartonella tamiae Th307]
Length = 860
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 352/805 (43%), Positives = 482/805 (59%), Gaps = 35/805 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD+DFSM W+V +A+ L
Sbjct: 3 VVVVESPAKAKTINKYLGSNYKVLASFGHVRDLPAKDGSVLPDEDFSMKWDVDNASSKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A+ LILA+DPDREGEAI+WH++E+L+Q+ + + V RVVF+ IT+ S+
Sbjct: 63 NEIAKAVKDADELILATDPDREGEAISWHVLEVLRQKKVIKDK-PVKRVVFNAITKKSVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC RE
Sbjct: 122 DAMAHPRDIDVPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLICQRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYWT+ A L + + F A L + K+L +L I + EA I+
Sbjct: 182 AEIEHFKHEEYWTIAAELSTQRKEN-----FIARLVAYNQKKLAKLDIKTQIEADGIKTM 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
++ A F+ I + R P+ TSTLQQ A+ KL FSA+ TM++AQKLYEGV + G
Sbjct: 237 LDGATFRTISVEAKPTKRNPSPPFTTSTLQQAASAKLGFSASRTMQVAQKLYEGVDI-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA E R I + +G + PE+ PR Y K KNAQEAHEAIR
Sbjct: 296 ETTGLITYMRTDGVQMASEAISEAREAIGQSFGQTYVPEK-PRFYSAKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVFRS 769
PT +R+P + LD D KLY LIW R +A QM PA + + V+I N R+
Sbjct: 355 PTSFKRIPHEATKYLDNDQAKLYELIWKRAIASQMLPADIERTTVEIEAINGSNHANLRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRH-EAFAILNSLKTGDPLYLGEVELKQHH 828
+ S V F GF AAY D + +E H E+ ILN EV+ QH
Sbjct: 415 TGSVVRFDGFIAAYMDHKEDDSKEEEESTRLPHIESEEILNK---------HEVDATQHT 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KKLEELGIGRPSTYASTL L+DR+YVT+ R L PE +GR+V+AFL
Sbjct: 466 TEPPPRYSEASLIKKLEELGIGRPSTYASTLATLRDRDYVTIDKRRLMPEAKGRIVTAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F++ +Y FTA +E +LD +S G WK +L D+W F+ + + L + V +L
Sbjct: 526 ENFFNQYVEYDFTASLEEKLDLISDGQLSWKQVLRDFWDAFNHSVSEIKDLRVSNVLDVL 585
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
+T F P ++ R CP+C G L K+ R+GA F+GC+ +P C + +
Sbjct: 586 NETLAPLAFP--PREEGGDPRLCPICHAGKLSLKLGRYGA--FVGCSNYPECKFTRQLGS 641
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSH 1064
+D +T D P ++G P + E + L++G +G YVQ+GE G KRA +
Sbjct: 642 EHNDNGET----AIADGPLVLGKDPNTNEDITLRTGRFGPYVQIGE---GKDSKRAGLPK 694
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
+TL+ AL LL P +G HP+ G PI + R G + + A++ + D
Sbjct: 695 SWAQSDMTLDKALSLLSLPREVGIHPETGTPITASIGRYGPYLSYNGKYANLENVDEVFD 754
Query: 1125 VTLEKALEFLSGKDVRRCGRPKGKP 1149
+ + +A+ L+ K + +G+P
Sbjct: 755 IGINRAVTILAEKQSKGGASGRGQP 779
>gi|338974897|ref|ZP_08630253.1| DNA topoisomerase I [Bradyrhizobiaceae bacterium SG-6C]
gi|338231992|gb|EGP07126.1| DNA topoisomerase I [Bradyrhizobiaceae bacterium SG-6C]
Length = 925
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 348/811 (42%), Positives = 494/811 (60%), Gaps = 46/811 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL SYGHVRDL A++GSV PD DF M+WE A
Sbjct: 2 NLVIVESPAKAKTINKYLGSSYEVLASYGHVRDLPAKNGSVDPDADFQMIWETDPKAAGR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL GA+ LILA+DPDREGEAI+WH++E+++Q+ AL + V RVVF+ IT+ S+
Sbjct: 62 LNDIAKALKGADKLILATDPDREGEAISWHVLEIMKQKRALKDQ-KVERVVFNAITKQSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+Q R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 TEAMQHPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F +EYW++ A L S F A L ++L +L IG+ EA+D +
Sbjct: 181 ELEIEKFVAKEYWSLLATLITPRGDS-----FEARLVGADGRKLQRLDIGTGAEAEDFRK 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +A F V + R +P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEG+ +
Sbjct: 236 ALEAATFTVTGVEAKPARRNPQSPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I+ EA ++R +I E YG ++ P+ PR+Y K KNAQEAHEAI
Sbjct: 295 GETTGLITYMRTDGVSIAPEAVTQVRKVIGEDYGKNYVPDS-PRQYTSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFR 768
RPTD+ R PA L LD D +LY LIW RT+A QM+ A + + VDI ++ R
Sbjct: 354 RPTDLSRRPASLKARLDNDQFRLYELIWMRTVASQMESAELERTTVDIAAKAGARTLELR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ V+F GF A Y++ G ++E++ R L + G+ + ++++ QH
Sbjct: 414 ATGQVVKFDGFLAVYQE---GRDDDPDDEDSKR------LPVINQGESVKREKLDVTQHF 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP R+SE SLVK++EELGIGRPSTYAS ++VL+DR YV ++ + L+ E +GR+V AFL
Sbjct: 465 TEPPPRFSEASLVKRMEELGIGRPSTYASIIQVLKDRGYVKLEKKRLHGEDKGRVVVAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+YF+ ++ FTAD+E +LD +S WK +L D+W F + + + +V +L
Sbjct: 525 ENYFARYVEFDFTADLEEKLDKISNNEIAWKQVLADFWRDFIGAVDDIKDVRVTEVLDVL 584
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
+ G+ ++ P D R CP CG G L K +FGA F+GC+ +P C Y + L
Sbjct: 585 DAMLGEHIYE--PRADGGDPRQCPSCGTGKLNLKAGKFGA--FVGCSNYPECRY-TRPLA 639
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRAS 1061
+ D + +G P S +V +K+G +G Y+QLGE + PKRA
Sbjct: 640 ASSGQSD-----------RPLGKDPVSGLEVAVKAGRFGPYIQLGEPKDYGEDEKPKRAG 688
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + LE AL+LL P ++G HP+DG+ I + R G VRH +T AS+
Sbjct: 689 IPKNMSPADVELELALKLLSLPRDIGPHPEDGEVITAGIGRFGPFVRHGKTYASLEAGDD 748
Query: 1122 PNDVTLEKALEFLSGKDV----RRCGRPKGK 1148
+V L +A+ ++ K RR G GK
Sbjct: 749 VYNVGLNRAVTLIAEKVAKGPSRRFGADPGK 779
>gi|110633707|ref|YP_673915.1| DNA topoisomerase I [Chelativorans sp. BNC1]
gi|110284691|gb|ABG62750.1| DNA topoisomerase I [Chelativorans sp. BNC1]
Length = 849
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 349/803 (43%), Positives = 491/803 (61%), Gaps = 32/803 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRP++DF+M WEV S + L
Sbjct: 3 VVVVESPAKAKTINKYLGKDYKVLASFGHVRDLPAKDGSVRPEEDFAMSWEVDSPSAKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A+ LILA+DPDREGEAI+WH++E+L+Q+ AL + V RVVF+ IT+ +I
Sbjct: 63 ADIAKAVKDADGLILATDPDREGEAISWHVLEVLRQKRALKDK-PVRRVVFNAITKKAIL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ + RE+DA+LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CD E
Sbjct: 122 DAMASPREVDASLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDLE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F ++YW + A+LD S F A LT KRL +L I S EA I+
Sbjct: 182 AEIERFVREDYWQIAALLDTPRGDS-----FEARLTTLDGKRLQKLDIKSQEEADSIKAL 236
Query: 592 INSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ A ++V+ + R+NP P+ TSTLQQ A+++L+FSA+ TM++AQ+LYEGV++
Sbjct: 237 LDGAAYRVLSVEAKP-TRRNPGPPFTTSTLQQAASSRLSFSASRTMQVAQRLYEGVEI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA + RS + +G + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETTGLITYMRTDGVQMAPEAIEAARSAVSNTFGPRYLPEK-PRHYSSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LD D +LY +IW R +A QM+ A + + V+I A + R
Sbjct: 354 RPTDFSRTPDEVRKYLDSDQARLYEMIWKRAIASQMEAAEIERTTVEIEASGAGRAAGLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ S V F GF AAY +V +E+ + E L + +G+ L V + +H
Sbjct: 414 AVGSVVRFDGFLAAYAEV---------KDEDSQDEEDRRLPEINSGEALKRNSVNVTKHT 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KKLEELGIGRPSTYA+ LK L DR YV+ + R L P+ +GR+V+AFL
Sbjct: 465 TEPPPRYSEASLIKKLEELGIGRPSTYAAILKTLDDRGYVSNERRKLVPQAKGRIVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F +Y FTAD+E +LD +S G WK +L D+W FS+ + L + V L
Sbjct: 525 ENFFRRYVEYDFTADLEEKLDEISDGKLSWKQVLRDFWKDFSAAVGDIKELRVTDVLDAL 584
Query: 949 EKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + + R CP CG G L K+ R+GA F+GC+ +P C+Y + G+
Sbjct: 585 NEELAPLVFPTREDGGDPRICPKCGAGKLSLKLGRYGA--FVGCSNYPECDYTRQ--LGE 640
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ E+ + ++ K++G P + E++ L+SG +G YVQ GE G KRA +
Sbjct: 641 NPAENG-EAEAGLNGNKVLGTDPFTGEEITLRSGRFGPYVQRGE---GKDAKRAGLPKGW 696
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+ + E A+ LL P ++G HP+ G+ I + R G + H T A++ V
Sbjct: 697 TPEDLDHEKAIALLSLPRDVGKHPETGKMISAGIGRYGPFLLHDGTYANLETVEDVFSVG 756
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
L +A+ L+ K + G + KP
Sbjct: 757 LNRAVSLLAEKQAKTNG-ARAKP 778
>gi|294084186|ref|YP_003550944.1| DNA topoisomerase I [Candidatus Puniceispirillum marinum IMCC1322]
gi|292663759|gb|ADE38860.1| DNA topoisomerase I [Candidatus Puniceispirillum marinum IMCC1322]
Length = 865
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 347/800 (43%), Positives = 495/800 (61%), Gaps = 31/800 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VV+VES KAK I YLGD Y+VL SYGHV DL ++ GSV P++DF M W++ S + HL
Sbjct: 3 VVIVESPAKAKTINRYLGDGYKVLASYGHVCDLPSKDGSVSPENDFEMKWQISSGSEKHL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K I AL A+ LILA+DPDREGEAI+WH++E L+ + L ++ V RVVF+E+T+++I
Sbjct: 63 KEITSALKNADKLILATDPDREGEAISWHVLEQLKAK-KLVNDMPVERVVFNEVTKSAIL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R +D L+ AY ARRALDYL+GF+ISP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 122 TAMDNPRALDEELIDAYRARRALDYLVGFSISPVLWRKLPGSKSAGRVQSVALRLICERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F EYW+V+ + K + F A LTH ++L +L I + AK E K
Sbjct: 182 AEIEAFITDEYWSVDTRMAKADGRE-----FTARLTHIDGEKLGKLDIPNEAAAKAAEAK 236
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
IN+A+ V K + V++NP+P + TSTLQQ+A+ KL FSA+ TM++AQ+LYEG+ +
Sbjct: 237 INAADLSV-KTIETKRVKRNPSPPFTTSTLQQEASRKLGFSASRTMQIAQRLYEGINIGS 295
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
T GLITYMRTDG+ + E+ +R I R+G+ + P+ PR Y K NAQEAHEAI
Sbjct: 296 DTT-GLITYMRTDGVQLGKESIAALRDDIGSRFGNRYLPD-SPRIYKTKAANAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTDI R P + LD D +LY LIW RT++ QMQ A + Q VDI + ++ R++
Sbjct: 354 RPTDITRDPEAMRSFLDHDQFRLYELIWKRTISSQMQSAELDQTGVDITDPAGTVTLRAN 413
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFA-ILNSLKTGDPLYLGEVELKQHHT 829
+ F G+ + Y + +++++++ E + +L +K G+ L V +QH T
Sbjct: 414 GQVMVFDGYLSVYME--------SQDDKDEKDETRSNLLPEMKEGENLDTQNVSPEQHFT 465
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP R+++ SLVK++EELGIGRPSTYAS ++VLQ+R+YV PE RGR+VS FL
Sbjct: 466 QPPPRFTDASLVKRMEELGIGRPSTYASIIQVLQNRDYVVKDRNRFIPEDRGRLVSTFLG 525
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
++F +Y FTA +E++LD VSAG +WK LL ++W F S + L I V +L+
Sbjct: 526 NFFDRYVEYDFTAQLESQLDEVSAGRLDWKALLANFWRDFKSAIDGTKDLTITNVLDVLD 585
Query: 950 KTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
+ G F + N RSCP C +G L K+ +FGA F+GC+ +P C + K D
Sbjct: 586 EELGPHFFKADENGALMRSCPNCDDGRLGLKLGKFGA--FVGCSNYPDCKFTRKLTDSDG 643
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKD 1067
E+D + N +G PA++ V L+ GPYG YVQ+G+ T PKRAS+ +
Sbjct: 644 TEDDAPVGDKN------LGIDPATELPVFLRKGPYGPYVQIGDPETKK-PKRASLPKGES 696
Query: 1068 VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
+I L+ AL LL P +G HP+ G I L R G ++++ S+P + V +
Sbjct: 697 AAAIDLDRALSLLALPREVGAHPETGDMIQAGLGRFGPYLKYQGGFTSLPADDDLLTVGI 756
Query: 1128 EKALEFLSGKDVRRCGRPKG 1147
+A++ L+ + ++ GR G
Sbjct: 757 NRAVDLLA-ESAKKKGRVLG 775
>gi|13470988|ref|NP_102557.1| DNA topoisomerase I [Mesorhizobium loti MAFF303099]
gi|14021731|dbj|BAB48343.1| DNA topoisomerase I [Mesorhizobium loti MAFF303099]
Length = 873
Score = 627 bits (1618), Expect = e-176, Method: Compositional matrix adjust.
Identities = 351/806 (43%), Positives = 487/806 (60%), Gaps = 36/806 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M W V +A+ L
Sbjct: 3 VVVVESPAKAKTINKYLGKNYKVLASFGHVRDLPAKDGSVRPDEDFAMSWAVDTASGKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A+ LILA+DPDREGEAI+WH++E+L+Q+ AL + V+RVVF+ IT++S+
Sbjct: 63 ADIAKAVKDADGLILATDPDREGEAISWHVLEVLKQKRALKDK-PVSRVVFNAITKSSVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+IDA LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDRE
Sbjct: 122 EAMANPRQIDAPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F +EYW + A+L + + F A LT F+ K+L +L I + +A DI+
Sbjct: 182 SEIERFIREEYWQIAAILGTPRNET-----FEARLTAFERKKLQKLDIANKAQADDIKAM 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A F+ + + R P+ TSTLQQ A++ L FSAT TM++AQ+LYEG+++ G
Sbjct: 237 LEGATFKALSVEAKPTKRNPGPPFTTSTLQQAASSGLGFSATRTMQVAQRLYEGMEI-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA R I + +G + PE+ PR Y K KNAQEAHEAIR
Sbjct: 296 ETTGLITYMRTDGVQMAPEAIDAARDAIAKEFGPKYLPEK-PRFYTTKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVFRS 769
PTD R PA + LD D ++LY LIW R +A QMQPA + + V+I N + R+
Sbjct: 355 PTDFMRTPASVRQYLDSDQMRLYELIWKRAIASQMQPAEIERTTVEIEAVNGARTAELRA 414
Query: 770 SCSRVEFLGFQAAY---EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
S V F GF AAY +D DA E+EEN R L ++ G+ L + Q
Sbjct: 415 VGSVVRFDGFIAAYTDQKDDDA------EDEENRR------LPEIRAGEQLARQAINATQ 462
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RYSE +L+KKLEELGIGRPSTY + LK L+DR+YVT+ R L P+ +GR++SA
Sbjct: 463 HTTEPPPRYSEATLIKKLEELGIGRPSTYTAILKTLEDRDYVTIDKRRLVPQAKGRLLSA 522
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL +F +Y FTA +E +LD +S G WK +L D+W FS + L + V
Sbjct: 523 FLESFFERYVEYDFTASLEEKLDEISDGKLAWKDVLRDFWKDFSGAVADIKELRVTDVLD 582
Query: 947 MLEKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
L + +F + + R CP CG G L K+ +FGA F+GC+ +P C++ +
Sbjct: 583 ALNEELAPLVFPAREDGSNPRICPKCGTGNLSLKLGKFGA--FVGCSNYPECSFTRQL-- 638
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSH 1064
D + D K++G P + E++ L+SG +G Y+Q G+ + KR+S+
Sbjct: 639 -GDAANPNGENGGGDDGTKVLGKDPYTAEEITLRSGRFGPYLQRGDGKDA---KRSSLPK 694
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
++I E AL LL P ++G HP+ + I L R G V H T A++
Sbjct: 695 GWTPETIDHEKALALLALPRDIGKHPETSKMISAGLGRYGPFVLHDGTYANLDSIEDVFS 754
Query: 1125 VTLEKALEFLSGKDVR-RCGRPKGKP 1149
+ L +A+ ++ K + + GR G P
Sbjct: 755 IGLNRAVTVIAEKQSKGKGGRNGGTP 780
>gi|357384649|ref|YP_004899373.1| DNA topoisomerase I [Pelagibacterium halotolerans B2]
gi|351593286|gb|AEQ51623.1| DNA topoisomerase I [Pelagibacterium halotolerans B2]
Length = 859
Score = 627 bits (1616), Expect = e-176, Method: Compositional matrix adjust.
Identities = 346/790 (43%), Positives = 487/790 (61%), Gaps = 40/790 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VV+VES KAK I YLG +EVL S+GHVRDL A+ GSVRPD+DF+M WEV + + L
Sbjct: 3 VVIVESPAKAKTINKYLGKDFEVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDTNSKKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I AL GA+ LILA+DPDREGEAI+WH+++ L+ + A+ ++ V RVVF+ IT+ ++
Sbjct: 63 ADITRALKGADELILATDPDREGEAISWHLLDALKAKKAIKADMPVKRVVFNAITKDAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+Q R+IDA LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ +RE
Sbjct: 123 TAMQHPRDIDAPLVDAYLARRALDYLVGFTLSPILWRKLPGSRSAGRVQSVALRLVTERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKPQEYW+V L++ SF L + ++L+I + +A+ ++
Sbjct: 183 EEIERFKPQEYWSVIPTLNQTGK------SFATRLYSVDGDKTDKLAIKTGEDAQGLKTA 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I NF+V ++ R P+ TSTLQQDA+++L+ S + TM++AQ+LYE
Sbjct: 237 IEKGNFKVASVDRKPTKRNPYAPFTTSTLQQDASSRLSLSPSRTMQIAQRLYED------ 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD + ++ EA + R +I + +GS + PE+ PR Y K KNAQEAHEAIR
Sbjct: 291 ---GLITYMRTDAVQMAPEAIEAARRVIGKEFGSEYVPEK-PRFYSTKAKNAQEAHEAIR 346
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVFRS 769
PTD+ + P L LD D K+Y LIW R +A QM+ A + + DI A +I R+
Sbjct: 347 PTDLGKHPDTLRN-LDPDQHKIYQLIWRRALASQMRSAEIERTTADIDVLAAGRAITLRA 405
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S V F GF Y G + E++E+ + L +L GD L V ++QH T
Sbjct: 406 TGSVVTFPGFLGVY-----GVEKTDEDDEDGKD-----LPALNVGDTPALENVAIEQHFT 455
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPPARY+E SL+KK+EELGIGRPSTYA+TLK LQDR+Y+ ++ R + PE RGR+V+AFL
Sbjct: 456 QPPARYTEASLIKKMEELGIGRPSTYAATLKTLQDRDYIKLEKRAIMPEDRGRLVTAFLQ 515
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F++ +Y FTA +E ELD +SAG ++K +L +W FS + L + +V L
Sbjct: 516 SFFTKYVEYGFTAGLEEELDEISAGEIDYKEVLRRFWKDFSHQADEIKDLRVSEVLDALN 575
Query: 950 KTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
G +F P+ R CP CG G L K+ ++GA FIGC+ +P C + +
Sbjct: 576 DLLGHHIFPERPDGTDPRLCPTCGTGQLSLKLGKYGA--FIGCSNYPECRHTQQLA---- 629
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKD 1067
E T Q + ++G P + ++ LK+G +G YVQLGED KR+S+ D
Sbjct: 630 -ESATGQASEAAQGDGVLGADPETGAEIYLKTGRFGPYVQLGEDAKD--AKRSSIPKGWD 686
Query: 1068 VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
S+ LE AL+LL P +G HP+DG+PI + R G V H +T A++P + V L
Sbjct: 687 AGSMDLEKALKLLSLPREVGLHPEDGKPISAGIGRYGPFVLHEKTYANLPDVEEVFTVGL 746
Query: 1128 EKALEFLSGK 1137
+A++ ++ K
Sbjct: 747 NRAVDLIAQK 756
>gi|414173930|ref|ZP_11428557.1| DNA topoisomerase I [Afipia broomeae ATCC 49717]
gi|410890564|gb|EKS38363.1| DNA topoisomerase I [Afipia broomeae ATCC 49717]
Length = 923
Score = 627 bits (1616), Expect = e-176, Method: Compositional matrix adjust.
Identities = 349/811 (43%), Positives = 492/811 (60%), Gaps = 46/811 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL SYGHVRDL A++GSV P+ DF M+WE A
Sbjct: 2 NLVIVESPAKAKTINKYLGSSYEVLASYGHVRDLPAKNGSVDPEADFQMIWETDPKAAGR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL GA+ LILA+DPDREGEAI+WH++E+++Q+ AL + + RVVF+ IT+ ++
Sbjct: 62 LNDIAKALKGADKLILATDPDREGEAISWHVLEIMKQKRALKDQ-KIERVVFNAITKQAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 TEAMKNPRQIDGALVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F P+EYW++ A L S F A L K++ +L IGS EA+D ++
Sbjct: 181 ELEIEKFVPREYWSLLATLATPRGES-----FEARLVGADGKKIQRLDIGSGAEAEDFKK 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +ANF V + R +P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEG+ +
Sbjct: 236 ALEAANFTVTTVEAKPARRNPQSPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I A + R +I E YG + P+ PR+Y K KNAQEAHEAI
Sbjct: 295 GETTGLITYMRTDGVQIDPSAITQARKVIGEDYGKAYVPDS-PRQYTSKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI-GNADESIV-FR 768
RPTD+ R P+ L LD D +LY LIW RT+A QM+ A + + VDI G ++ R
Sbjct: 354 RPTDLSRRPSSLKSRLDNDQARLYELIWMRTVASQMESAEMERTTVDITGKVGARVLELR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ V+F GF A Y++ G E+E++ R L + G+ L +++ QH
Sbjct: 414 ATGQVVKFDGFLAVYQE---GRDDDPEDEDSKR------LPVINEGEALKREGLDVSQHF 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP R+SE SLVK++EELGIGRPSTYAS ++VL+DR YV ++ + L+ E +GR+V AFL
Sbjct: 465 TEPPPRFSEASLVKRMEELGIGRPSTYASIIQVLKDRGYVKLEKKRLHGEDKGRVVVAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+YF+ ++ FTAD+E +LD +S WK +L D+W F + + + +V +L
Sbjct: 525 ENYFARYVEFDFTADLEEKLDLISNNEISWKQVLTDFWKDFIGAVNEIKDVRVTEVLDVL 584
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
+ G+ ++ P D R CP CG G L K +FGA F+GC+ +P C Y + L
Sbjct: 585 DAMLGEHIYE--PRADGGDPRQCPSCGTGKLNLKAGKFGA--FVGCSNYPECRY-TRPLA 639
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRAS 1061
D + +G P S +V +K+G +G Y+QLGE + PKRA
Sbjct: 640 ASSGSSD-----------RPLGKDPVSGLEVAVKAGRFGPYIQLGEPKDYGEDEKPKRAG 688
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + LE AL+LL P ++G HP+DG+ I + R G VRH +T AS+ +
Sbjct: 689 IPKNMSPADVELELALKLLSLPRDIGPHPEDGEIITAGIGRFGPFVRHGKTYASLEAGDE 748
Query: 1122 PNDVTLEKALEFLSGKDV----RRCGRPKGK 1148
V L +A+ ++ K RR G GK
Sbjct: 749 VYTVGLNRAVTLIAEKIAKGPSRRFGADPGK 779
>gi|395778169|ref|ZP_10458682.1| DNA topoisomerase I [Bartonella elizabethae Re6043vi]
gi|423715573|ref|ZP_17689797.1| DNA topoisomerase I [Bartonella elizabethae F9251]
gi|395418478|gb|EJF84805.1| DNA topoisomerase I [Bartonella elizabethae Re6043vi]
gi|395429700|gb|EJF95761.1| DNA topoisomerase I [Bartonella elizabethae F9251]
Length = 857
Score = 627 bits (1616), Expect = e-176, Method: Compositional matrix adjust.
Identities = 344/792 (43%), Positives = 482/792 (60%), Gaps = 35/792 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+V+ S+GHVRDL A+ GSV PD DFSM W++ SAA
Sbjct: 2 NIVIVESPAKAKTINKYLGSQYKVVASFGHVRDLPAKDGSVLPDQDFSMKWDIDSAAAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A++LILA+DPDREGEAI+WHI+++L Q+ L + + RVVF+ IT+ S+
Sbjct: 62 LNEIAKAVKEADSLILATDPDREGEAISWHILDVLHQKKVLKDK-PIKRVVFNAITKKSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDR
Sbjct: 121 LDAMNNPRDIDTSLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F ++YW++ L ++ F A LT F +++ +L I S +A I
Sbjct: 181 ESEIEHFIKEDYWSITTQL-----KTIRNDHFQARLTMFNQRKIGKLDIQSQEQADQIRL 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ + + + + R P+ TSTLQQ A++KL FSA+ TM++AQKLYEG+++ +
Sbjct: 236 MLEKSQYHTLGVEAKPTKRNPFPPFTTSTLQQAASSKLGFSASRTMQIAQKLYEGIEI-N 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA R +I E +G + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GEMAGLITYMRTDGVQIAPEAIDAARKVIHESFGKDYLPEK-PRFYSTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD +R P + LD D KLY LIW R +A QM+ A + + V+I D R
Sbjct: 354 RPTDFQRFPNQVRHFLDNDQAKLYELIWKRAIASQMRSAEIERTTVEIEAKQGDNRANLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S V F GF Y D + +EEN+ L + TG+ L +VE QH
Sbjct: 414 ATGSVVRFDGFICVYTD--------QRDEENNEENESTRLPQINTGEALTKEKVESVQHT 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP+RYSE SL+KKLEELGIGRPSTYASTL L DR Y+ + + L P+ +GR+V+AFL
Sbjct: 466 TEPPSRYSEASLIKKLEELGIGRPSTYASTLATLCDRGYIVIDKKKLIPDAKGRIVTAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F+ +Y FTAD+E +LD +S G WK +L D+W F++ + Q L I V +L
Sbjct: 526 ENFFNRYVEYGFTADLEEKLDLISDGKLSWKDVLRDFWDGFNASISNIQELRIANVLDVL 585
Query: 949 EKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
T F P ++ RSCP+C G L K+ R+GA F+GC+ +P C Y + L
Sbjct: 586 NVTLAPLAF---PEREDGSDVRSCPLCKNGQLSLKLGRYGA--FVGCSNYPECKY-TRQL 639
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
+ +EE+ N DEP ++G P + + V L++G +G Y+QLGE + KRA +
Sbjct: 640 GTETEEENKAVHN---DEPVMLGIDPETGKDVSLRNGRFGPYIQLGESKD---VKRAGLP 693
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
++ITLE AL LL P +G HP+ + I + R G + H A + +
Sbjct: 694 KEWQAENITLEKALALLSLPREIGIHPETSKMITATIGRYGPYLSHNGKSARLLHADEVF 753
Query: 1124 DVTLEKALEFLS 1135
D+ + +A+ L+
Sbjct: 754 DIGINRAVTVLA 765
Score = 44.7 bits (104), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 23/131 (17%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ IG HP + + + G YG Y+ + K A + H +V I + A+ +L
Sbjct: 713 PREIGIHPETSKMITATIGRYGPYL-------SHNGKSARLLHADEVFDIGINRAVTVLA 765
Query: 1082 YP---------------VNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
LG HP +G + +R R G V + A++PK+ P VT
Sbjct: 766 EQQENKTKQSRTTSAALATLGEHP-EGGTVTVRNGRYGPYVNWGKVNATLPKDKDPISVT 824
Query: 1127 LEKALEFLSGK 1137
L +ALE +S K
Sbjct: 825 LSEALELISAK 835
>gi|329889385|ref|ZP_08267728.1| DNA topoisomerase I [Brevundimonas diminuta ATCC 11568]
gi|328844686|gb|EGF94250.1| DNA topoisomerase I [Brevundimonas diminuta ATCC 11568]
Length = 878
Score = 626 bits (1615), Expect = e-176, Method: Compositional matrix adjust.
Identities = 361/801 (45%), Positives = 478/801 (59%), Gaps = 39/801 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+VL SYGHVRDL ++ GSV PDDDF+M WEV + A
Sbjct: 2 NLVIVESPAKAKTINKYLGSDYKVLASYGHVRDLPSKDGSVLPDDDFAMHWEVDAKASKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A A+ +ILA+DPDREGEAI+WH++E+L ++ AL ++ V RV F+ IT++++
Sbjct: 62 LSEIAEAAKAADRVILATDPDREGEAISWHVLEILNKKKAL-KDTDVQRVTFNAITKSAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R++D LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL ++ DR
Sbjct: 121 LEAMANPRQLDMELVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRIVVDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
EMEI++FK QEYW+VEA L D+ F A L KR+ +L I S A +
Sbjct: 181 EMEIEKFKAQEYWSVEADL------IADSPPFTARLVKHDGKRVQRLDIVSEAMAMAARE 234
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++S +F + K+ R P+ TSTLQQ+AA KL F+A TM+ AQKLYEGV D
Sbjct: 235 AVHSGDFTIKSVEKKPAKRSPAPPFTTSTLQQEAARKLGFTAQRTMQAAQKLYEGV---D 291
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
T GLITYMRTDG++++ E + R I +R+G + P E PR Y K KNAQEAHEAI
Sbjct: 292 DTG-GLITYMRTDGVYVTPEGIAQAREAIGQRFGPAYVPAE-PRYYKTKAKNAQEAHEAI 349
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT+I R P L LD D +LY LIW R +A QM+ A + + V+I D R++
Sbjct: 350 RPTNILRNPDTLR--LDSDLQRLYELIWKRMIASQMESARLDRTTVEIETPDGQTGLRAT 407
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
V F GF AAYE+ + E+E+++ L +LK G + + QH T+
Sbjct: 408 GQVVVFDGFIAAYEEGRDDRQKGAEDEDDEGGR----LPALKEGAKAKVEAIRTDQHFTE 463
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP R+SE +LVKKLEELGIGRPSTYAS L L+DR YV + +PE +GR+V+AFL
Sbjct: 464 PPPRFSEATLVKKLEELGIGRPSTYASILTTLRDREYVRMDKNRFFPEDKGRLVTAFLEQ 523
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F++ +Y FTA +ET+LD VSAG +WK LL +W F + A L + L +
Sbjct: 524 FFAKWVEYDFTAALETQLDEVSAGDLDWKTLLRRFWQDFHAATQAAGELRTTAILDHLNE 583
Query: 951 TFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
G +F P+K R CPVC EG L K SRFGA FIGC+++P C Y
Sbjct: 584 ALGPHIF---PDKGDGSNPRECPVCHEGQLSLKTSRFGA--FIGCSRYPECKYTRPVASP 638
Query: 1006 D--DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
D D ++ R VD PA+ + V LK G +G YV+ PKR+S+
Sbjct: 639 DAADGGAESGDRELGVD--------PATGQPVHLKIGRFGPYVETTPPDADK-PKRSSLP 689
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
SI LE AL LL P ++G HP+DG+ I L R G V H T A+V +
Sbjct: 690 KGWSPASIDLEKALRLLSLPRDVGPHPEDGKMITASLGRYGPFVAHAGTYANVADIEEVF 749
Query: 1124 DVTLEKALEFLSGKDVRRCGR 1144
DV L +A+ L+ K R GR
Sbjct: 750 DVGLNRAVALLAEKRAGRAGR 770
Score = 41.2 bits (95), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 21/120 (17%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ +G HP + + G YG +V + A+V+ I++V + L A+ LL
Sbjct: 709 PRDVGPHPEDGKMITASLGRYGPFV-------AHAGTYANVADIEEVFDVGLNRAVALLA 761
Query: 1082 -------------YPV-NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
P+ LG HP+ G+ + + R G V+ + A++PK P D+T+
Sbjct: 762 EKRAGRAGRTSAAAPLKELGAHPETGEAVQVMAGRYGPYVKSGKINATLPKGTAPEDMTM 821
>gi|347760471|ref|YP_004868032.1| DNA topoisomerase I [Gluconacetobacter xylinus NBRC 3288]
gi|347579441|dbj|BAK83662.1| DNA topoisomerase I [Gluconacetobacter xylinus NBRC 3288]
Length = 905
Score = 626 bits (1615), Expect = e-176, Method: Compositional matrix adjust.
Identities = 345/797 (43%), Positives = 483/797 (60%), Gaps = 36/797 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD Y VL S+GHVRDL + GSV PD+ F+M WE +
Sbjct: 4 VVVVESPAKAKTINKYLGDNYTVLASFGHVRDLPPKDGSVLPDEGFAMKWEADERGSRQI 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GA++L LA+DPDREGEAI+WH+ ML++++ L + I V RV F+EIT+++IK
Sbjct: 64 AAIAKALRGAKHLYLATDPDREGEAISWHVRSMLEEKNLL-KGIDVQRVTFNEITKSAIK 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ RE+D L++AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 TAMAHPRELDFPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+P+EYW++ A + + F A LTH +L+Q +G A +
Sbjct: 183 AEIEVFRPREYWSITARMTTPAGAA-----FSARLTHLDGHKLDQFDLGDEARAMAAKAA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + ++ V K +R + R P P+ TST+QQ+A+ KL A M+ AQ+LYEG+ + G
Sbjct: 238 VEAGDYSVDKVERRKVRRNPPPPFTTSTMQQEASRKLGMGAQVAMRTAQQLYEGIDI-GG 296
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA IR I +G + PE+ R Y K KNAQEAHEAIR
Sbjct: 297 ETVGLITYMRTDGVQMAGEAIGAIRGHIGHSFGPEYVPEKA-RIYSTKAKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+RR PA ++ L + KLY L+W R++A QMQ A + Q+ VDI + + + R++
Sbjct: 356 PTDVRRTPADMARYLSPEQKKLYDLVWKRSVASQMQSAELDQVAVDITDRQQRVTLRATG 415
Query: 772 SRVEFLGFQAAYEDV--DAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S + F GF Y + D+ A K +++ DR +L ++ D + GEV QH T
Sbjct: 416 SIIAFDGFLRLYSEGRDDSPA---KSDDDQDR-----MLPAMSEHDAIGRGEVAADQHFT 467
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RYSE SLVKK+EE+GIGRPSTYAS L VL+DRNYV +++R PE RGR+V+AFL+
Sbjct: 468 QPPPRYSEASLVKKMEEIGIGRPSTYASILTVLRDRNYVQLENRRFVPEDRGRLVTAFLT 527
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F D FTA +E +LD++S G W+ ++ +WS FS + L I V L+
Sbjct: 528 SFFERYVDTQFTAGLEEQLDDISGGRANWRDVMSAFWSDFSHAVDQTKDLKISDVITALD 587
Query: 950 KTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
F P+++ R C CG G L K+ R+GA FIGC+ +P C + K +
Sbjct: 588 ADLAPYFF---PDREDGQDPRVCTACGTGRLGLKLGRYGA--FIGCSNYPTCQFTRKLVI 642
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLPKRA 1060
D ++ T D +++G P + E+V ++ GP+G YVQ G ED+ P+RA
Sbjct: 643 --DPSKEGEDAATLKDGMRVLGTAP-TGEEVTVRRGPWGLYVQQGEPDPEDKKAK-PRRA 698
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
++ D D ITL A+ LL P +G HP+ G+PI L R G V+ S+ K+
Sbjct: 699 TIPRGLDGDKITLVQAVGLLSLPRIVGIHPELGEPIEAGLGRFGPYVKMGAIYGSLDKDD 758
Query: 1121 KPNDVTLEKALEFLSGK 1137
V L +A++ L+ K
Sbjct: 759 DVLTVGLNRAVDALAKK 775
>gi|451941944|ref|YP_007462581.1| DNA topoisomerase I [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
gi|451901331|gb|AGF75793.1| DNA topoisomerase I [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
Length = 853
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 343/803 (42%), Positives = 481/803 (59%), Gaps = 29/803 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+V+ S+GHVRDL A+ GSV PD DFSM W V SAA
Sbjct: 2 NIVIVESPAKAKTINKYLGSQYKVVASFGHVRDLPAKDGSVLPDQDFSMKWSVDSAATKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L + V RVVF+ IT+ S+
Sbjct: 62 LNEIAKAVKEADSLILATDPDREGEAISWHILDILRQKKVLKDK-PVKRVVFNAITKKSV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDR
Sbjct: 121 LDAMSNPRDIDISLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F ++YW++ L ++ F A LT F K++ +L I S +A I
Sbjct: 181 ESEIEHFIKEDYWSLTTNL-----KTIRNDGFQARLTMFNQKKIGKLDIQSQEQADQIRI 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A ++ + + R P+ TSTLQQ A++KL FSA+ TM++AQKLYEGV++ +
Sbjct: 236 MLEGAKYRTLSVEAKPTKRNPSPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVEM-N 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ I+ EA + R +I E +G+ + PE+ P Y K KNAQEAHEAI
Sbjct: 295 GEMAGLITYMRTDGVQIAPEAIESARRVIHEAFGNDYIPEK-PHFYSTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD +R P + LD D KLY LIW R +A QM A + + V+I + + R
Sbjct: 354 RPTDFQRTPDYVRNFLDSDQAKLYELIWKRAIASQMCSAEIERTTVEIEAQKGENNANLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S + F GF + Y D + EE L + G+ L +VE QH
Sbjct: 414 ATGSVIRFDGFISVYTD--------QREEETSEENETTRLPQINAGESLTKEKVEAIQHS 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KKLEELGIGRPSTYASTL L DR Y+ + R L P +GR+V+AFL
Sbjct: 466 TEPPPRYSEASLIKKLEELGIGRPSTYASTLSTLCDRGYIVMDKRKLIPNAKGRIVTAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F+ +Y FTAD+E +LD +S G WK ++ D+W F++ T + L I V +L
Sbjct: 526 ENFFNRYVEYGFTADLEEKLDLISDGKLSWKDVMRDFWDEFNASITNIKELRITNVLDVL 585
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
T F + RSCP+C G L K+ R+GA F+GC+ +P C Y + L +
Sbjct: 586 NVTLAPLAFPLREDGSDVRSCPLCTNGQLSLKLGRYGA--FVGCSNYPECKY-TRQLGTE 642
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
EE+ RN DEP ++G P + + + L++G +G Y+QLGE + KR +
Sbjct: 643 TGEENDAMRN---DEPLMLGIDPETGKDISLRNGRFGPYIQLGESKEA---KRVGLPKEW 696
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
++IT + AL L+ P +G HP+ G+ I + R G + H A + + D+
Sbjct: 697 QAETITFDKALALISLPRKIGIHPETGKMITATIGRYGPYLSHDGKSAPLLHTDEVFDIG 756
Query: 1127 LEKALEFLSGKDVRRCGRPKGKP 1149
+ +A+ L+ K + R + P
Sbjct: 757 INRAVTVLAEKQGNKTTRSRTTP 779
>gi|170747437|ref|YP_001753697.1| DNA topoisomerase I [Methylobacterium radiotolerans JCM 2831]
gi|170653959|gb|ACB23014.1| DNA topoisomerase I [Methylobacterium radiotolerans JCM 2831]
Length = 894
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 345/819 (42%), Positives = 488/819 (59%), Gaps = 48/819 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG YEV+ S+GH+RDL + GSV P+ DF MVWE+ + +
Sbjct: 3 VVVVESPAKAKTINKYLGRDYEVIASFGHIRDLPPKDGSVDPEQDFRMVWELADRGASRV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ GA+ LILA+DPDREGEAI+WH++E L + AL + I V RV F+ IT+AS++
Sbjct: 63 SEIAKAVKGADKLILATDPDREGEAISWHVLEALTARKAL-KGIPVERVTFNAITKASVE 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ REID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+ +RE
Sbjct: 122 QAMRKPREIDQALVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVVERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ FKP+EYWT+ A L + D +F A L KR+ +L +G+ EA +
Sbjct: 182 MEIERFKPREYWTLIATL-----TTADGATFEARLVGADGKRIQRLDVGTGEEAAAFRRD 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A FQV + R P+ TSTLQQ+A+ KL + TM++AQ+LYEGV + G
Sbjct: 237 LELATFQVASVEAKPAKRHPQPPFTTSTLQQEASRKLGMAPAQTMRVAQRLYEGVDI-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G+ITYMRTDG+ ++ EA ++ R +I + +G + P+ PRKY K KNAQEAHEA+R
Sbjct: 296 ETVGIITYMRTDGVDMAPEAIQDARRVIGKEFGDRYVPDV-PRKYSVKAKNAQEAHEAVR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFRS 769
PTD+ RLP ++ L+ + +LY LIW+RTMA QM+ A + + VD+ +I R+
Sbjct: 355 PTDMGRLPKTVARHLEPEQARLYELIWTRTMASQMESAELERTTVDVTAKVGPRTIDLRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ V+F GF Y+ E ++++ E L +K GDPL + QH T
Sbjct: 415 TGQVVKFDGFLTLYQ----------EGKDDEEDEESRRLPPMKAGDPLTRERISATQHFT 464
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE SLVK++EELGIGRPSTYA+ L+ L+DR YV ++ + L PE +GR+V+ FL
Sbjct: 465 EPPPRYSEASLVKRMEELGIGRPSTYAAVLQTLRDREYVKIEKKRLQPEDKGRLVTGFLE 524
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F +Y FTA +E +LD VS +W+ +L D+W FS+ + L + V + L
Sbjct: 525 SFFRRYVEYDFTAGLEEQLDRVSNAEIDWRAVLRDFWRDFSAAIGETKELRVADVLEALN 584
Query: 950 KTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYI----A 1000
G +F P+K R+CP CG G L K+ +FGA FIGC+ +P C Y A
Sbjct: 585 GLLGPHIF---PDKGDGSNPRTCPTCGSGQLSLKLGKFGA--FIGCSNYPECKYTRQLSA 639
Query: 1001 KTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE---DRTGYLP 1057
+ GD D V +++G PA+ V L+ G +G ++QLGE ++ P
Sbjct: 640 TGIDGDGDGSSAEGGQPGV---RVLGDDPATGLPVTLRDGRFGPFLQLGEASTEKGAEKP 696
Query: 1058 KRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVP 1117
KR+S+ + L AL LL P + HP+ G+PI+ L R G V+H +T A++
Sbjct: 697 KRSSLPKGLSPSDVDLNKALALLALPREVARHPETGEPILANLGRFGPYVQHGKTYANLG 756
Query: 1118 KNMKPNDVTLEKALEFLSGKD--------VRRCGRPKGK 1148
K+ ++ +A++ + K+ GRP GK
Sbjct: 757 KDDDVLEIGANRAIDLIVAKEQGGGRGRLAADPGRPLGK 795
Score = 39.7 bits (91), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 21/138 (15%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
P+ + HP + E +L G +G YVQ G+ A++ DV I A++L+
Sbjct: 722 PREVARHPETGEPILANLGRFGPYVQHGK-------TYANLGKDDDVLEIGANRAIDLIV 774
Query: 1081 ---------RYPVN----LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
R + LG G+ ++++ + G V A++PK M +TL
Sbjct: 775 AKEQGGGRGRLAADPGRPLGKDEASGRDLVVKAGKYGPYVTDGEVNATLPKTMSAEALTL 834
Query: 1128 EKALEFLSGKDVRRCGRP 1145
++A+ ++ K G+P
Sbjct: 835 DEAIALVNAKRAAGGGKP 852
>gi|182680317|ref|YP_001834463.1| DNA topoisomerase I [Beijerinckia indica subsp. indica ATCC 9039]
gi|182636200|gb|ACB96974.1| DNA topoisomerase I [Beijerinckia indica subsp. indica ATCC 9039]
Length = 961
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 347/814 (42%), Positives = 487/814 (59%), Gaps = 44/814 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VV+VES KAK I YLG YEV S+GHVRDL + GSV PD DF+M+W+V + +
Sbjct: 2 NVVIVESPAKAKTINKYLGKDYEVFASFGHVRDLPPKDGSVDPDHDFAMLWDVDTKSAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A+ +ILA+DPDREGEAI+WH++E+L+ + L + V RVVF+ IT+++I
Sbjct: 62 LADIAKAVKEADRVILATDPDREGEAISWHVLEVLKAKKVLKDK-PVERVVFNAITQSAI 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R ID +LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+C+R
Sbjct: 121 LDAMRHPRAIDIDLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCER 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI+ F P+EYW++ A L F A L K++N+L IG+ EA+ +
Sbjct: 181 ELEIERFVPREYWSLTAFLRTPADQP-----FSAKLVGADGKKINRLDIGAGAEAEAFKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +A F V K + R P+ TSTLQQ+AA KL + TM+LAQ+LYEG+ L D
Sbjct: 236 ALETAKFTVAKVEAKPARRNPAPPFTTSTLQQEAARKLGLAPARTMQLAQRLYEGIDL-D 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA R +I YG + P+ PR+Y K KNAQEAHEAI
Sbjct: 295 GETVGLITYMRTDGVDLAPEAITGARKVIAAEYGDKYVPQ-APRRYQVKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD+ RLP ++ LD + +LY LIW+RT+A QM+ A + + VDI + R
Sbjct: 354 RPTDLARLPKHVARFLDAEQARLYDLIWTRTIASQMESAELERTTVDILAEVGARRLDLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ V F GF Y+ E +++ E L +++ GDPL +E QH
Sbjct: 414 ATGQVVRFDGFLKLYQ----------EGRDDEEDEEGGRLPAMQVGDPLKKDRIEASQHF 463
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP R++E +LVK++EELGIGRPSTYASTL VL+DR YV + + L PE +GR+V+AFL
Sbjct: 464 TEPPPRFTEATLVKRMEELGIGRPSTYASTLAVLKDREYVRIDKKRLIPEDKGRLVTAFL 523
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F Y FTAD+E+ LD +S +WK +L D+W+ FS + L QV L
Sbjct: 524 ESFFGRYVGYDFTADLESSLDKISNHEIDWKQVLRDFWADFSGAIADTKDLRTTQVLDSL 583
Query: 949 EKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
+ G +F P+K R+CP C G L K+ +FG+ FIGC+ +P C + +TL
Sbjct: 584 NEVLGPYIF---PDKGDGSNPRACPSCANGQLSLKLGKFGS--FIGCSNYPECKF-TRTL 637
Query: 1004 YGDDDEEDTLQRNTNVDEP--KLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRAS 1061
E N D P K++G + E++ L+ G +G YVQ GE G PKRAS
Sbjct: 638 SDTGPEGG----NGETDRPGVKVLGVDAETGEEISLRDGRFGAYVQRGE---GEKPKRAS 690
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ +TL+ AL LL P + HP+ +PI+ + R G V+H +T A++ K+
Sbjct: 691 LPKTIAPADLTLDMALGLLSLPREVARHPETHEPILAGIGRFGPYVQHGKTYANIGKDED 750
Query: 1122 PNDVTLEKALEFL----SGKDVRRCGRPKGKPKR 1151
+ +A++ + SG RR G+ + P R
Sbjct: 751 ILTLGANRAIDLIIAKESGLTGRRFGKGESAPAR 784
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 22/125 (17%)
Query: 1023 KLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRY 1082
+++G HP + V +K+G +G YV G+ LPK A D ++TLE+ L LL
Sbjct: 784 RVLGDHPEGGQ-VTIKAGRFGPYVNYGK-LNATLPKDA------DPTTLTLEEGLALLAA 835
Query: 1083 PVN-------------LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEK 1129
+ LG HP G PI +R R G V H + A++ + P +TLE+
Sbjct: 836 KASGQGGGKGAVQGQLLGEHPSGG-PITVREGRFGPYVNHGKVNATLKSGLSPETLTLEE 894
Query: 1130 ALEFL 1134
A+ +
Sbjct: 895 AIRLI 899
>gi|115525380|ref|YP_782291.1| DNA topoisomerase I [Rhodopseudomonas palustris BisA53]
gi|115519327|gb|ABJ07311.1| DNA topoisomerase I [Rhodopseudomonas palustris BisA53]
Length = 944
Score = 624 bits (1609), Expect = e-175, Method: Compositional matrix adjust.
Identities = 345/814 (42%), Positives = 497/814 (61%), Gaps = 48/814 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG +EVL S+GHVRDL A++GSV PD +F M+WEV A
Sbjct: 27 NIVIVESPAKAKTINKYLGSSFEVLASFGHVRDLPAKNGSVDPDANFQMIWEVDPKAAGR 86
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I AL GA+ LILA+DPDREGEAI+WH++E+L+++ A+ ++ + RVVF+ IT+ ++
Sbjct: 87 LNDIAKALKGADKLILATDPDREGEAISWHVLEVLKEKRAIKDH-KIERVVFNAITKQAV 145
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 146 TEAMKNPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 205
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F +EYW++ A L + F A LT K++ +L IG+ EA+D +Q
Sbjct: 206 ELEIEQFVAREYWSLVATLATPRGET-----FEARLTGADGKKIARLDIGTGAEAEDFKQ 260
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I +ANF V + + R+NP P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEG+ +
Sbjct: 261 AILAANFTV-SSVEAKPARRNPHAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDI- 318
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ I A + R +I E YG ++ P+ PR+Y K KNAQEAHEA
Sbjct: 319 GGETTGLITYMRTDGVQIDGSAITQARHVIGEDYGKNYVPD-APRQYVAKAKNAQEAHEA 377
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVF 767
IRPTD+ R PA L LD+D +LY LIW RT+A QM+ A + + VDI +
Sbjct: 378 IRPTDLSRRPASLRSRLDQDQYRLYELIWIRTIASQMESAELERTTVDIAAKVGARQLEL 437
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ V+F GF A Y++ ++ +++ I+N G+ L ++ + QH
Sbjct: 438 RATGQVVKFDGFLAVYQE------GRDDDSDDEDSRRLPIINQ---GEDLDRRDLAVTQH 488
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP R+SE SLVK++EELGIGRPSTYAS L+VL+DR YV ++ + LY + +GR+V AF
Sbjct: 489 FTEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVKLEKKRLYGQDKGRVVVAF 548
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L ++F+ +Y FTA +E LD +S W+ +L D+W+ F + L + QV
Sbjct: 549 LENFFARYVEYDFTAALEESLDRISNNEISWQQVLRDFWTDFIGAVDEIKDLRVSQVLDA 608
Query: 948 LEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
L+ G ++A P D R CP CG G L K +FGA F+GC+ +P C Y + L
Sbjct: 609 LDTMLGPHIYA--PRDDGGDPRQCPSCGTGKLNLKAGKFGA--FVGCSNYPECRY-TRPL 663
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRA 1060
D E +++G P + V +K+G +G Y+QLG+ + G PKRA
Sbjct: 664 AADGGGEGD----------RILGKDPETDRDVAVKAGRFGPYIQLGDAKDYGEGEKPKRA 713
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
+ + LE AL+LL P +G HP+ G+PI + R G V+H +T AS+
Sbjct: 714 GIPKNMSPGDVELELALKLLSLPREVGKHPETGEPIKAGIGRFGPYVQHEKTYASLEAGD 773
Query: 1121 KPNDVTLEKALEFLS-----GKDVRRCGRPKGKP 1149
+ ++ L +A+ ++ G R+ G GKP
Sbjct: 774 EVFNIGLNRAVTLIAEKIAKGPSKRKFGADPGKP 807
>gi|239947544|ref|ZP_04699297.1| DNA topoisomerase I [Rickettsia endosymbiont of Ixodes scapularis]
gi|239921820|gb|EER21844.1| DNA topoisomerase I [Rickettsia endosymbiont of Ixodes scapularis]
Length = 770
Score = 624 bits (1608), Expect = e-175, Method: Compositional matrix adjust.
Identities = 337/786 (42%), Positives = 487/786 (61%), Gaps = 27/786 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGESISWHVAEVIKEKNKVKSDDFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + +AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTHVNDQKLEKFSIINEKDAKDLTEK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S NF V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQNFYVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKN QEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKSYGDKYLP-TSPRIYKSKVKNVQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L L++D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLEKDYYKLYELIWKRTIACQMENVIMDLVVANLASENKEYLAKANG 415
Query: 772 SRVEFLGF-QAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF + E VD A EEN +L LK +PL EV QH T+
Sbjct: 416 STIAFDGFYKVCRESVDDEA-----EEEN------KMLPPLKEQEPLKTKEVIPNQHFTE 464
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV+++ + PE GR+V+ FL
Sbjct: 465 PPPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVSLEKKRFIPEELGRLVTVFLVG 524
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 525 FFKKYVEYDFTAGLENELDEIAAGKLEWKAALSNFWSGFNHNIESVNEQKITEIISYVQK 584
Query: 951 TFGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDE 1009
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+D+
Sbjct: 585 ALDYHLFGE--NKESKVCPSCKTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNN 640
Query: 1010 EDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVD 1069
E+ + + +E K++G + E + LK GPYG Y+QLGE PKR+ V + +
Sbjct: 641 ENEGEPSAIPNENKVLGTNKDGVE-IYLKKGPYGPYIQLGEQEGKVKPKRSPVPANLNQN 699
Query: 1070 SITLEDALELLRYPVNLGNHPKD-GQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
ITL+ AL+LL P+ +G PKD G+ IM+ + G +++ SVPK ++ L+
Sbjct: 700 DITLDIALKLLSLPLKIG-VPKDSGEEIMIGYGKFGPYIKYMGKFISVPKKYDFLNLRLD 758
Query: 1129 KALEFL 1134
A++ +
Sbjct: 759 DAMKLI 764
>gi|389878409|ref|YP_006371974.1| DNA topoisomerase I [Tistrella mobilis KA081020-065]
gi|388529193|gb|AFK54390.1| DNA topoisomerase I [Tistrella mobilis KA081020-065]
Length = 942
Score = 623 bits (1607), Expect = e-175, Method: Compositional matrix adjust.
Identities = 339/785 (43%), Positives = 476/785 (60%), Gaps = 37/785 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD ++VL SYGHV DL A+ GSVRPD+DF+M +EV + HL
Sbjct: 3 VVVVESPAKAKTINKYLGDDFKVLASYGHVSDLPAKDGSVRPDEDFAMTYEVDPKSEQHL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL GA+ L LA+DPDREGEAI+WH+ L ++ AL + + V RVVFHEIT+++++
Sbjct: 63 KAIASALKGADQLFLATDPDREGEAISWHVHNALTRRGAL-KGVPVKRVVFHEITKSAVQ 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+ID NLV A ARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 122 KAIANPRDIDMNLVNAQQARRALDYLVGFNLSPVLWRKLPGSRSAGRVQSVALRLICERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+ +EYWT++A E L A L K+L++ ++GS E K + +
Sbjct: 182 AEIEAFRSREYWTIDAEFAAGERRLL------ARLHALDGKKLDKFALGSEDETKAVLGR 235
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ + + + + +R R+NP P + TSTLQQ+A+ KL FSA TM++AQKLYEG+ L
Sbjct: 236 LEALSDWRVSDVERKQGRRNPAPPFTTSTLQQEASRKLGFSAKKTMQVAQKLYEGISLGR 295
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
T GLITYMRTD +++S+EA IR ++ + G + P+ PR + K KNAQEAHEA+
Sbjct: 296 ETV-GLITYMRTDSVNLSNEAVAAIRDMVDQVNGPRYLPDR-PRSFANKAKNAQEAHEAV 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ R P + LD+D +LY LIW RT+A QM A + Q+ +++ + + FR++
Sbjct: 354 RPTDVFRRPKEIRSHLDDDQFRLYELIWKRTVASQMAAAILDQVAIEVTDGAKVATFRAT 413
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF A Y+ E +++ + L + + +PL G ++ QH T+
Sbjct: 414 GSVIAFDGFLALYQ----------EGRDDEEEDEEKRLPNFERAEPLDRGPLKSDQHFTE 463
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E +LVKKLEELGIGRPSTYAS + VLQDRNYV + + PE RG +V+AFL
Sbjct: 464 PPPRYTEATLVKKLEELGIGRPSTYASIISVLQDRNYVVLDKKRFVPEDRGWLVTAFLVS 523
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F +Y FTA +E ELD V+ G +WK +L +W F L I V +E
Sbjct: 524 FFDRYVEYDFTARLENELDQVAEGEVDWKAVLRAFWDAFHMAIDGTSDLKISDVLTAVEA 583
Query: 951 TFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
+F P+K R+CP C G L ++ +FG+ F+ C+ +P C +
Sbjct: 584 RLESHVF---PDKGDGSDPRACPACANGRLSLRLGKFGS--FVACSNYPECKFTRPVGGA 638
Query: 1006 DDDEEDTLQRN-TNVD-EPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGY-LPKRASV 1062
+ + T +D PK +G PA+ V L+ GPYG YVQLG+ G PKRAS+
Sbjct: 639 AGTGDGASEAGATGLDVGPKHLGDDPATGLPVTLRKGPYGVYVQLGDGGKGEEKPKRASL 698
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+++TL+ AL LL P +G HP+ G+ I + R G ++H K++ P
Sbjct: 699 PKGLTPEAVTLDIALGLLALPREIGQHPETGEMITAGIGRFGPYLKHNGAF----KSLTP 754
Query: 1123 NDVTL 1127
+D L
Sbjct: 755 DDDVL 759
>gi|367473882|ref|ZP_09473424.1| DNA topoisomerase I [Bradyrhizobium sp. ORS 285]
gi|365273794|emb|CCD85892.1| DNA topoisomerase I [Bradyrhizobium sp. ORS 285]
Length = 915
Score = 623 bits (1607), Expect = e-175, Method: Compositional matrix adjust.
Identities = 341/796 (42%), Positives = 485/796 (60%), Gaps = 42/796 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL S+GHVRDL A++GSV P+++F M+WEV A
Sbjct: 2 NIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPEENFRMIWEVDPKAAGR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I +L GA+ LILA+DPDREGEAI+WH++E+L+++ AL + + RVVF+ IT+ ++
Sbjct: 62 LNDIAKSLKGADRLILATDPDREGEAISWHVLEVLKEKRALKDQ-KIERVVFNAITKQAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 SEAMKNPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
EMEI++F P+EYW++ A L DTF A L K++ +L IG+ EA+D +
Sbjct: 181 EMEIEKFVPREYWSLIATLATPRG---DTFE--ARLVGADGKKIQRLDIGTGAEAEDFKN 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+N+A + V + R P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEG+ +
Sbjct: 236 TLNAATYTVATVDAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I A + R +I E YG+ + P+ PR+Y K KNAQEAHEAI
Sbjct: 295 GETTGLITYMRTDGVQIDGSAITQARKVIGEIYGNKYVPDS-PRQYQTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD+ R PA L LD+D KLY LIW+RT+A QM+ A + + VDI ++ R
Sbjct: 354 RPTDLSRKPADLRKRLDDDQAKLYELIWTRTIASQMESAELERTTVDIVAKAGGRTLELR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ V+F GF A Y+ E +++ E L + DPL + + QH
Sbjct: 414 ATGQVVKFDGFLALYQ----------EGRDDEEDEDSRRLPQMSPNDPLKRQNLAVTQHF 463
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP R+SE SLVK++EELGIGRPSTYAS L VL+ R YV ++ + L+ E +GR+V AFL
Sbjct: 464 TEPPPRFSEASLVKRMEELGIGRPSTYASILDVLKARGYVKLEKKRLHGEDKGRVVIAFL 523
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F +Y FTAD+E +LD +S W+ +L D+W+ F + L + QV L
Sbjct: 524 ENFFRRYVEYDFTADLEEQLDRISNNEIAWQQVLKDFWTGFIGAVDEIKDLRVAQVLDAL 583
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
++ G ++ P +D R CP CG G L K +FGA F+GC+ +P C Y
Sbjct: 584 DEMLGPHIYP--PREDGGDVRQCPTCGTGRLNLKAGKFGA--FVGCSNYPECRYTR---- 635
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRAS 1061
L ++ +++G P S +V +K+G +G Y+QLGE + G PKRA
Sbjct: 636 -------PLAADSEAAADRMLGQDPDSGLEVAVKAGRFGPYIQLGEQKDYAEGEKPKRAG 688
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + L+ AL+LL P +G HP+ G PI L R G V+H +T AS+ +
Sbjct: 689 IPKGTQPSDVDLDLALKLLSLPREIGKHPETGLPITAGLGRFGPFVKHDKTYASLEAGDE 748
Query: 1122 PNDVTLEKALEFLSGK 1137
D+ L +A+ ++ K
Sbjct: 749 VFDIGLNRAVTLIAEK 764
>gi|395784294|ref|ZP_10464133.1| DNA topoisomerase I [Bartonella melophagi K-2C]
gi|395424049|gb|EJF90237.1| DNA topoisomerase I [Bartonella melophagi K-2C]
Length = 849
Score = 623 bits (1607), Expect = e-175, Method: Compositional matrix adjust.
Identities = 341/804 (42%), Positives = 493/804 (61%), Gaps = 31/804 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG Y+V+ S+GHVRDL+A+ GSV PD DF+M W + +A+ L
Sbjct: 3 IVIVESPAKAKTINKYLGPQYKVVASFGHVRDLSAKDGSVLPDQDFAMKWNIDTASAKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A++LILA+DPDREGEAI+WHI+++L Q+ AL + V RVVF+ IT+ S+
Sbjct: 63 NEIAKAVKEADSLILATDPDREGEAISWHILDVLNQKKAL-KGKPVKRVVFNAITKKSVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDRE
Sbjct: 122 DAMSNPRDIDISLVDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRIICDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F ++YW++ L ++ +F A L F ++L +L I S +A+ I
Sbjct: 182 SEIEHFIKEDYWSITTSL-----KTIRDDNFYARLVAFNQEKLGKLDIKSLEQAEKIRSM 236
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A ++ + N + +++NP+P + TSTLQQ A++KL FS + TM++AQKLYEGV++ +
Sbjct: 237 LEEAEYRTL-NIEAKPIKRNPSPPFTTSTLQQAASSKLGFSPSRTMRIAQKLYEGVEI-N 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G +GLITYMRTDG+ ++ EA R +I E +G+ + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETSGLITYMRTDGVQMATEAIDSARKVIKESFGNDYVPEK-PRFYSTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVFR 768
RPTD +R P + LD D KLY LIW R +A QM A + + V+I + + R
Sbjct: 354 RPTDFQRNPNQIRNFLDSDQEKLYELIWKRAIASQMCSAEIERTTVEIQAIQGENNANLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S + F GF +AY D + +EEN + A L + + L +VEL QH
Sbjct: 414 ATGSVIRFDGFISAYTD--------QRDEENGEDDESARLPHINANEALTKEKVELTQHT 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KKLEELGIGRPSTYAS L +L +R Y R L P+ +GR+V+AFL
Sbjct: 466 TEPPPRYSEASLIKKLEELGIGRPSTYASILAILSERGYTVTDKRKLVPDAKGRIVTAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F+ +Y FTA++E +LD +S G WK +L D+W+ F++ T Q+L I V +L
Sbjct: 526 ESFFNRYVEYGFTANLEEKLDLISDGKLAWKDVLHDFWNEFNASVTDIQNLRITHVLDVL 585
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
F + + RSCP+C G L K+ R+GA F+GC+ +P C Y + L D
Sbjct: 586 NVILAPLAFPTREDGSDPRSCPLCANGQLSLKLGRYGA--FVGCSNYPECKY-TRQLGID 642
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
EE+ + R+ DEP ++G P + + + L SG +G Y+QLG+D+ KR +
Sbjct: 643 TGEENEVVRS---DEPLVLGVDPETGKDIFLCSGRFGSYIQLGQDKGA---KRVGLPKEW 696
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+I L AL LL P +G HP+ G+ I + R G + H A++ + ++
Sbjct: 697 ARKNIDLNQALSLLSLPREIGVHPETGKIITATIGRYGPYLAHDGKSANLSDINEVFEIG 756
Query: 1127 LEKALEFLSGKDVRRCGRPKGKPK 1150
+ +A+ L+ K + R + P+
Sbjct: 757 INRAVTVLAEKQENKTKRGRTAPE 780
>gi|296535602|ref|ZP_06897783.1| exopolyphosphatase [Roseomonas cervicalis ATCC 49957]
gi|296264118|gb|EFH10562.1| exopolyphosphatase [Roseomonas cervicalis ATCC 49957]
Length = 930
Score = 623 bits (1607), Expect = e-175, Method: Compositional matrix adjust.
Identities = 344/798 (43%), Positives = 470/798 (58%), Gaps = 27/798 (3%)
Query: 347 PSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSA 406
P+ VVVVES KAK I YLG + VL S+GHVRDL + GSVRP++DF+M W
Sbjct: 12 PAMTDVVVVESPAKAKTINKYLGQDFTVLASFGHVRDLPPKDGSVRPEEDFAMDWSSEDR 71
Query: 407 AWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEIT 466
+ +I AL GA NL LA+DPDREGEAI+WH+ EML+Q+ L + + V R+ F+EIT
Sbjct: 72 GEKQVAAIAKALRGARNLYLATDPDREGEAISWHVQEMLRQKGVL-KGVQVHRITFNEIT 130
Query: 467 EASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSL 526
+ +++ AL RE+D L++AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L
Sbjct: 131 KRAVQHALAHPRELDTPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRL 190
Query: 527 ICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAK 586
IC+RE EI+ FK +EYWTVE + D F A LTH + ++L+Q + A
Sbjct: 191 ICEREAEIEVFKAREYWTVEGRF-----LTADAAPFSARLTHLEGRKLDQFDLPDEASAM 245
Query: 587 DIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ + + F + K+ R P P+ TSTLQQ+A+ KL F A TM+LAQ+LYEG
Sbjct: 246 RAKAAVEAGRFSIASVEKKRSRRNPPPPFTTSTLQQEASRKLGFGAQQTMRLAQQLYEGA 305
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
++ G GLITYMRTDG+ ++ EA IR + E +G + P PR+Y K KNAQEA
Sbjct: 306 EI-QGETVGLITYMRTDGVQMAREAMFAIRDHVKESFGPDYIPA-APREYSSKAKNAQEA 363
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPTD+ R P ++ L+ + +LY L+W R +A QMQ A + Q VD+ +
Sbjct: 364 HEAIRPTDVTRTPEQMARFLNPEQRRLYELVWKRAVASQMQSAELDQTVVDLADEAGRTR 423
Query: 767 FRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
R++ S + F GF Y EDVD EE D L ++ DP L +
Sbjct: 424 LRANGSVIAFDGFLKLYREDVDDAPAGASAGEEEDTR----TLPPMREKDPAKLSAAQAD 479
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH TQPP RYSE SLVKK+EELGIGRPSTYAS L+ LQDR+YV + R PE RGR+V+
Sbjct: 480 QHFTQPPPRYSEASLVKKMEELGIGRPSTYASILQTLQDRDYVALDKRRFVPEDRGRLVT 539
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
AFL ++F + FTA +E +LD++S G EW+ ++ +W F++ + L I +V
Sbjct: 540 AFLVNFFERYVNTGFTATLEEQLDDISGGRAEWREVMRQFWRDFNAAIAATKDLTISEVI 599
Query: 946 KMLEKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK-T 1002
L++ G F + + R+CP CG G L ++ R GA FIGC+ +P C + +
Sbjct: 600 DALDEELGPHFFPTPADGGDPRACPACGNGRLGLRLGRNGA--FIGCSNYPECRHTRPLS 657
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTG-----YLP 1057
+ G + E Q K +G P + V L+ GPYG YVQLGE T P
Sbjct: 658 VSGAEAE----QEGALAGGMKELGPDPVTGAPVTLRRGPYGLYVQLGEAGTDAKGKPTKP 713
Query: 1058 KRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVP 1117
KRAS++ D DS+ L+ AL LL P +G HP+ G+ I + R G V+ S+
Sbjct: 714 KRASLARGMDPDSLDLDRALALLALPRIVGVHPESGEEISAAIGRFGPYVKMGSIYKSLD 773
Query: 1118 KNMKPNDVTLEKALEFLS 1135
K+ V + +A+ L+
Sbjct: 774 KDDDVLTVGINRAVALLA 791
>gi|116251501|ref|YP_767339.1| DNA topoisomerase I [Rhizobium leguminosarum bv. viciae 3841]
gi|115256149|emb|CAK07230.1| putative DNA topoisomerase I [Rhizobium leguminosarum bv. viciae
3841]
Length = 884
Score = 623 bits (1607), Expect = e-175, Method: Compositional matrix adjust.
Identities = 346/808 (42%), Positives = 490/808 (60%), Gaps = 36/808 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M+WEV SA+
Sbjct: 2 NVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDSASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I AL ++ LILA+DPDREGEAI+WH+++ML ++ AL +V RVVF+ IT+ ++
Sbjct: 62 MKDIADALKSSDGLILATDPDREGEAISWHVLDMLNKKRALTGK-SVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ A R++D LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMAAPRDLDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +IG+ +A ++
Sbjct: 181 ESEIERFISEEYWNISALLKTPRGDE-----FEAKLVSASGKRLQPRAIGNGEDAGRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A++ V+ + + V++NP P+ TSTLQQ A++ L FSA+ TM++AQKLYEGV +
Sbjct: 236 LLEGASY-VVDSVEAKPVKRNPGPPFTTSTLQQAASSNLGFSASRTMQVAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA RS I +++G + PE+ PR Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARSAIVDQFGERYMPEK-PRFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D ++LY LIW R +A QM A + + +I N E
Sbjct: 353 IRPTDFDRSPDRVRKFLDADQIRLYELIWKRGIASQMASAEIERTTAEITADNKGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDEDGRLPEINAREALAKQKINSTQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TL L+DR+YVT+ R L P+ +GR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLATLRDRDYVTIDKRKLIPQAKGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTAD+E +LD +SAG WK +L D+W F + + L + V
Sbjct: 527 LESFFTKYVEYDFTADLEEKLDRISAGELNWKQVLRDFWKDFFAQIEDTKELRVTNVLDS 586
Query: 948 LEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
L + +F P ++ R C VCG G L K+ ++GA F+GC+ +P CNY +
Sbjct: 587 LNEALAPLVF---PKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPDCNYTRQL 641
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
+ E D ++EPK +G P + E++ L+SG +G Y+Q G+ G KRAS+
Sbjct: 642 SSENGGEAD----GAALNEPKNLGTDPTTGEELTLRSGRFGPYIQRGD---GKEAKRASL 694
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+ I E A+ L+ P ++G HP+ G+ I + R G + H + A++
Sbjct: 695 PKGWKPEDIDYEKAMALISLPRDIGKHPESGKMISSGIGRYGPFLLHDGSYANLETVEDV 754
Query: 1123 NDVTLEKALEFLSGKDVRRCGR-PKGKP 1149
V L +A+ ++ K + GR +G P
Sbjct: 755 FSVGLNRAVTVIAEKAKQAPGRGARGTP 782
>gi|220923233|ref|YP_002498535.1| DNA topoisomerase I [Methylobacterium nodulans ORS 2060]
gi|219947840|gb|ACL58232.1| DNA topoisomerase I [Methylobacterium nodulans ORS 2060]
Length = 888
Score = 623 bits (1606), Expect = e-175, Method: Compositional matrix adjust.
Identities = 339/812 (41%), Positives = 490/812 (60%), Gaps = 37/812 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG YEVL S+GHVRDL A+ GSV P+ DF M+WE+ +
Sbjct: 3 VVVVESPAKAKTINKYLGHGYEVLASFGHVRDLPAKDGSVDPEQDFKMLWELEDRGAKRV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ GA+ LILA+DPDREGEAI+WH++E LQ + L ++++V RV F+ IT+ +++
Sbjct: 63 SEIARAVKGADKLILATDPDREGEAISWHVLEALQAKRVL-KDVSVERVTFNAITKDAVQ 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDRE
Sbjct: 122 TAMAQPRQIDQALVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+P+E+W++ A L D A L KR+ +L IG+ EA+ +
Sbjct: 182 AEIEAFRPREFWSLVATLATARGAVFD-----ARLVGADGKRIQRLDIGTAEEAEAFRRD 236
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A F V N + R++P P + TSTLQQ+A+ KL + TM++AQ+LYEGV++
Sbjct: 237 LELATFTV-GNVEAKPARRHPQPPFTTSTLQQEASRKLGLAPAQTMRIAQRLYEGVEI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA ++ R +I +G + P PR Y K KNAQEAHEA+
Sbjct: 295 GETVGLITYMRTDGVDMAPEAIQDARRVIGAEFGDAYVPA-APRSYSVKAKNAQEAHEAV 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFR 768
RPTD+ RLP ++ L+ + +LY LIW RT+A QM+ A + + VDI + R
Sbjct: 354 RPTDLGRLPKEVARFLEPEQARLYELIWIRTVASQMESAELERTTVDIAAQVGPRRLDLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ V+F GF Y+ E ++++ E L S+ G+ L + QH
Sbjct: 414 ATGQVVKFDGFLTLYQ----------EGKDDEEDEESRRLPSMAAGEALRRERIAATQHF 463
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SLVK++EELGIGRPSTYA+ L+VL+DR YV + + L PE +GR+V+ FL
Sbjct: 464 TEPPPRYSEASLVKRMEELGIGRPSTYAAVLQVLRDREYVRLDKKRLVPEDKGRLVTGFL 523
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F +Y FTAD+E +LD +S +W+ +L D+W FS+ + L +V + L
Sbjct: 524 ESFFRRYVEYDFTADLEEQLDRISNAEIDWRAVLRDFWRDFSAAIAGTKELRTAEVLEAL 583
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
+ G +F P D R+CP C GTL K+ +FGA F+GC+ +P C Y + L
Sbjct: 584 NQLLGPHIFP--PRADGANPRACPNCASGTLSLKLGKFGA--FVGCSNYPECKYT-RQLS 638
Query: 1005 GDDDEEDTLQRNTNVDEP--KLIGHHPASKEKVLLKSGPYGFYVQLGE---DRTGYLPKR 1059
E + + +P +++G PA+ V L+ G +G +VQLGE ++ PKR
Sbjct: 639 AAGVEGEGDGSSGEGGQPGQRVLGEDPATGLPVTLREGRFGPFVQLGEASAEKGAEKPKR 698
Query: 1060 ASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKN 1119
+S+ ++LE AL+LL P + HP+ G+PI++ L R G V+H +T A++ K
Sbjct: 699 SSLPRGLSPAEVSLETALKLLALPREVARHPETGEPILVNLGRFGPYVQHGKTYANLGKG 758
Query: 1120 MKPNDVTLEKALEFLSGKDVRRCGRPKGKPKR 1151
++ +A++ + K+ + GRP P R
Sbjct: 759 DDLLEIGANRAIDLIVAKE-QGGGRPAADPGR 789
Score = 43.9 bits (102), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
P+ + HP + E +L+ G +G YVQ G+ A++ D+ I A++L+
Sbjct: 722 PREVARHPETGEPILVNLGRFGPYVQHGK-------TYANLGKGDDLLEIGANRAIDLIV 774
Query: 1081 -------RYPVN----LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEK 1129
R + LGN P+ G+ + ++ R G V A++PK + +TL++
Sbjct: 775 AKEQGGGRPAADPGRVLGNDPESGRAVTVKAGRYGPYVTDGEVNATLPKGADRDAITLDE 834
Query: 1130 ALEFLSGK 1137
AL ++ +
Sbjct: 835 ALRLIAAR 842
>gi|229586593|ref|YP_002845094.1| DNA topoisomerase I [Rickettsia africae ESF-5]
gi|228021643|gb|ACP53351.1| DNA topoisomerase I [Rickettsia africae ESF-5]
Length = 776
Score = 623 bits (1606), Expect = e-175, Method: Compositional matrix adjust.
Identities = 329/784 (41%), Positives = 481/784 (61%), Gaps = 23/784 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGE+I+WH+ E++++++ + + R+ F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGESISWHVAEVIKEKNQVKSDDFFKRIAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTHVNDQKLEKFSIINEKNAKDLTKK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQKFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKSYGDKYLP-TSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L LD+D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLDKDYYKLYELIWKRTIACQMENVIMDLVVANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK +PL EV QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESIDDEAEEENKMLPPLKEQEPLKTKEVIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 526 FKKYVEYDFTAGLENELDAIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKICPSCNTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ + T +E K++G E + LK GPYG Y+QLG+ PKR+ V + +
Sbjct: 642 NEGEPATMPNENKVLGTDKDGVE-IYLKKGPYGPYIQLGKQEGKVKPKRSPVPASLNQND 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITL+ AL+LL P+ +G H + IM+ + G +++ SV K +++L+ A
Sbjct: 701 ITLDIALKLLSLPLKIGIHKDSDEEIMIGYGKFGPYIKYMDQFISVQKKYDFLNLSLDDA 760
Query: 1131 LEFL 1134
++ +
Sbjct: 761 MKLI 764
>gi|269958869|ref|YP_003328658.1| DNA topoisomerase [Anaplasma centrale str. Israel]
gi|269848700|gb|ACZ49344.1| DNA topoisomerase 1 [Anaplasma centrale str. Israel]
Length = 813
Score = 623 bits (1606), Expect = e-175, Method: Compositional matrix adjust.
Identities = 338/789 (42%), Positives = 486/789 (61%), Gaps = 45/789 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VV+VES +KAK I YLG Y+V+ S+GHVRD A+SGSV PDDDF M++E+ + ++
Sbjct: 4 VVIVESPSKAKTISKYLGGKYKVVASFGHVRDFPAKSGSVDPDDDFRMIYEIIPKSEKYI 63
Query: 412 KSIKVALSGAENLI-LASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
I A+S ++ I LA+DPDREGEAIAWHI+E+L+++ A+ ++ + R+VF+E+T+ ++
Sbjct: 64 DKIVKAVSSEKSGIYLATDPDREGEAIAWHIIEVLRERSAIGGDVAINRMVFNEVTKRAV 123
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R I+ +LV A ARR LDYL+GF +SPLLWRKLPG +SAGRVQS AL L+C+R
Sbjct: 124 TAAISDCRSINMDLVHAQQARRVLDYLVGFTLSPLLWRKLPGSKSAGRVQSVALRLVCER 183
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW +E +L K L A L + ++L++ +I + A I +
Sbjct: 184 EHEIERFDSKEYWNIEVLLKSKSGEEL-----TAALKCYNGEKLDKFAIPNADSASAIAE 238
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ + + V + R P+ITS+LQQ+A+ KL FSA TM +AQKLYEG+ +
Sbjct: 239 HVRNGTYHVASVEAKRTKRNPHPPFITSSLQQEASTKLGFSAKNTMMVAQKLYEGIDI-G 297
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG +IS EA IR I ++G + + PRKY KKVKNAQEAHEAI
Sbjct: 298 GETVGLITYMRTDGFYISSEAISYIRDTIKMQFGEQYLTKS-PRKYVKKVKNAQEAHEAI 356
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTDI P L+ L ED LKLY LIW RTMA QM+ A + Q+ VDI + D S+V +
Sbjct: 357 RPTDITMTPDSLAQYLSEDQLKLYDLIWRRTMASQMESAVIDQVIVDIQSKDGSVVLHAV 416
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F G+Q Y +++D+ + +L L+ G+ L EV QH TQ
Sbjct: 417 GSSLGFDGYQRVY-----------GTDDDDKRK---MLPKLEAGEDCSLVEVSPSQHFTQ 462
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKK+EE+GIGRPSTYA+ + VLQ+R Y ++ + P RGR+V+AFL++
Sbjct: 463 PPPRYSEASLVKKMEEIGIGRPSTYATIISVLQERGYTQLEQKKFVPSERGRIVNAFLTN 522
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F +Y FTA++E ELD +S G WK +L +W +F S + + + + ++ K + K
Sbjct: 523 FFGRYVEYDFTANLEEELDLISNGNMAWKEVLRRFWDKFISDVSTVKGIEVSEILKSITK 582
Query: 951 TFGDSLFASLPNK----DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ F+ PN +RSCP CGEG L+ + ++ A F+GCN++P C Y + + GD
Sbjct: 583 DLEEYAFS--PNAGEAVNRSCPGCGEGELMLNIGKYKA--FLGCNRYPECKY-TRGVGGD 637
Query: 1007 DDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
DE PK++G A++E+++LK GPYG Y+QLG++ G KR +V
Sbjct: 638 S--------GVCRDEFPKVLGLDDATQEEIILKHGPYGEYLQLGDNAKG---KRVAVP-- 684
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ + ITL+ A +LL P+ LG++P Q + L R G V + T SV ++
Sbjct: 685 QGIQEITLDVAKKLLSLPITLGHYPNTAQDVKLGTGRFGPYVLYGGTYFSVKGREDFWNL 744
Query: 1126 TLEKALEFL 1134
T E+A+ +
Sbjct: 745 TFEEAVNVI 753
>gi|390448114|ref|ZP_10233737.1| DNA topoisomerase I subunit omega [Nitratireductor aquibiodomus RA22]
gi|389666753|gb|EIM78197.1| DNA topoisomerase I subunit omega [Nitratireductor aquibiodomus RA22]
Length = 873
Score = 623 bits (1606), Expect = e-175, Method: Compositional matrix adjust.
Identities = 342/802 (42%), Positives = 478/802 (59%), Gaps = 31/802 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG Y+VL S+GHVRDL + GSVRPD+DF+M W V S + L
Sbjct: 3 LVIVESPAKAKTINKYLGSNYKVLASFGHVRDLPPKDGSVRPDEDFAMSWSVDSPSSKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A+ LILA+DPDREGEAI+WH++E+L+Q+ L + V RVVF+ IT+ ++
Sbjct: 63 SDIAKAVKDADTLILATDPDREGEAISWHVLEVLKQKKVLKDK-PVQRVVFNAITKKAVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
AL RE+DA LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDRE
Sbjct: 122 DALSHPREVDAPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F ++YW + A L S F A LT K+L +L I S +A DI+
Sbjct: 182 AEIERFIREDYWQIAATLATPRQES-----FEARLTTVDGKKLQKLDIKSQEQADDIKAM 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A+F+ + + R P+ TSTLQQ A+++L F A+ TM++AQ+LYEG+ + G
Sbjct: 237 LEGASFKAVSVEAKPTRRNPAPPFTTSTLQQAASSRLGFGASRTMQVAQRLYEGIDI-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AGLITYMRTDG+ ++ EA + R I +G + PE+ PR Y K KNAQEAHEAIR
Sbjct: 296 ETAGLITYMRTDGVQMAPEALDQARKAIGVEFGERYLPEK-PRFYSVKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFRS 769
PTD R P + LD D +LY +IW R +A QMQPA + + V+I N + R+
Sbjct: 355 PTDFSRTPDQVRRYLDADQARLYEMIWKRAIASQMQPAEIERTTVEIVAENGGRNAGLRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S + F GF AAY AI EN E++ L + G+ +++ +H T
Sbjct: 415 VGSVIRFEGFLAAY------AIDKDENAEDEESRR---LPEIHGGEAQTREKIDATKHTT 465
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE SL+KK+EELGIGRPSTYA+TLK L+DR+YVT++ R L P+ +GR+V+AFL
Sbjct: 466 EPPPRYSEASLIKKMEELGIGRPSTYAATLKTLEDRDYVTIEKRRLMPQAKGRLVTAFLE 525
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
++F +Y FTAD+E +LD +S G WK +L D+W FS + + L + V L
Sbjct: 526 NFFERYVEYDFTADLEEKLDRISDGQLSWKEVLRDFWQDFSGHVDEIKELRVTNVLDALN 585
Query: 950 KTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
+ F + + R+CP CG G L K+ R GA F+GC+ +P C + + +
Sbjct: 586 EELAPLAFPAKEDGTDPRACPRCGTGQLSLKLGRHGA--FVGCSNYPECGFTRQFGEAGN 643
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKD 1067
E +D K++G P ++E++ L+SG +G YVQ GE G KRA +
Sbjct: 644 GENG----ENGLDGDKVLGKDPHTEEEITLRSGRFGPYVQRGE---GKEAKRAGLPKGWS 696
Query: 1068 VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
SI +E AL LL P ++G HP+ G+ I + R G + H A++ + L
Sbjct: 697 PGSIDIEKALALLALPRDVGQHPESGKMISAGIGRYGPFLLHDGAYANLESVEDVFSIGL 756
Query: 1128 EKALEFLSGKDVRRCGRPKGKP 1149
+A+ ++ K + GR + P
Sbjct: 757 NRAVTVIAEKKA-KGGRGRSTP 777
>gi|334315842|ref|YP_004548461.1| DNA topoisomerase I [Sinorhizobium meliloti AK83]
gi|384529012|ref|YP_005713100.1| DNA topoisomerase I [Sinorhizobium meliloti BL225C]
gi|407720243|ref|YP_006839905.1| DNA topoisomerase I [Sinorhizobium meliloti Rm41]
gi|418403234|ref|ZP_12976728.1| DNA topoisomerase I subunit omega [Sinorhizobium meliloti CCNWSX0020]
gi|433613074|ref|YP_007189872.1| DNA topoisomerase I, bacterial [Sinorhizobium meliloti GR4]
gi|333811188|gb|AEG03857.1| DNA topoisomerase I [Sinorhizobium meliloti BL225C]
gi|334094836|gb|AEG52847.1| DNA topoisomerase I [Sinorhizobium meliloti AK83]
gi|359502776|gb|EHK75344.1| DNA topoisomerase I subunit omega [Sinorhizobium meliloti CCNWSX0020]
gi|407318475|emb|CCM67079.1| DNA topoisomerase I [Sinorhizobium meliloti Rm41]
gi|429551264|gb|AGA06273.1| DNA topoisomerase I, bacterial [Sinorhizobium meliloti GR4]
Length = 894
Score = 622 bits (1604), Expect = e-175, Method: Compositional matrix adjust.
Identities = 339/795 (42%), Positives = 485/795 (61%), Gaps = 35/795 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES +KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF M WEV A+
Sbjct: 2 NVVVVESPSKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVRPDEDFEMSWEVDGASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ LILA+DPDREGEAI+WH++++L+++ + + V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSSDGLILATDPDREGEAISWHVLDLLRKKKVIGDK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+IDA+LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMAEPRDIDASLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +IG+ EA ++
Sbjct: 181 EAEIERFVTEEYWNISALLKTPRGDE-----FEARLVSADGKRLPPKAIGNGEEANRLKS 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++ A++ V+++ + V++NP+P + TSTLQQ A++KL FSA+ TM++AQKLYEGV +
Sbjct: 236 LLDGASY-VVESVEAKPVKRNPSPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA + R I ++G + PE+ PR Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIEAARQAIGSQFGERYLPEK-PRFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D L+LY L+W R +A QM A + + +I NA +
Sbjct: 353 IRPTDFDRTPDQVRRFLDGDMLRLYDLVWKRGIASQMASAEIERTTAEIVADNAGKKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S + F GF AAY D+ + + +E+ R L + + L ++ QH
Sbjct: 413 RATGSVIRFDGFIAAYTDMKEDGEQADDGDEDGR------LPEINARENLAKQKINASQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE +L+KK+EELGIGRPSTYA+T+ L DR+YV + R L P+ +GR+V+AF
Sbjct: 467 FTEPPPRYSEATLIKKMEELGIGRPSTYAATVTTLIDRDYVEIDKRKLVPQAKGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F+ +Y FTA +E +LD +SAG WK +L D+W F S + L + V
Sbjct: 527 LESFFTRYVEYDFTASLEEKLDQISAGELNWKDVLRDFWKDFFSQIEDTKELRVTNVLDA 586
Query: 948 LEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
L + +F P ++ R C VCG G L K+ ++GA F+GC+ +P CNY +
Sbjct: 587 LNEELAPLVF---PKREDGGDPRICQVCGTGKLSLKLGKYGA--FVGCSNYPECNYTRQL 641
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
+ + + N EP+ +G P + E++ L++G +G YVQ G+ G KRAS+
Sbjct: 642 SSDSNGDAEAAAAN----EPQSLGKDPHTGEEITLRNGRFGPYVQRGD---GKEAKRASL 694
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+I E AL LL P ++G HP+ G+ I + R G V H T A++
Sbjct: 695 PKGWTPAAIDHEKALALLSLPRDIGPHPESGKMISTGIGRYGPFVLHNGTYANLESVEDV 754
Query: 1123 NDVTLEKALEFLSGK 1137
+ L +A+ L+ K
Sbjct: 755 FSIGLNRAISVLADK 769
>gi|389691013|ref|ZP_10179906.1| DNA topoisomerase I, bacterial [Microvirga sp. WSM3557]
gi|388589256|gb|EIM29545.1| DNA topoisomerase I, bacterial [Microvirga sp. WSM3557]
Length = 897
Score = 622 bits (1604), Expect = e-175, Method: Compositional matrix adjust.
Identities = 340/785 (43%), Positives = 475/785 (60%), Gaps = 38/785 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
V+VVES KAK I YLG YEVL S+GH+RDL A+ GSV P+ DF M+W + +
Sbjct: 3 VLVVESPAKAKTINKYLGKDYEVLASFGHIRDLPAKDGSVDPEADFRMIWTLEDRGSKRV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ GAE LILA+DPDREGEAI+WH+VE L+++ L +++ V RV F+ IT+ +++
Sbjct: 63 SEIAKAIKGAEKLILATDPDREGEAISWHVVEALREKRVL-KDLPVERVTFNAITKDAVQ 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
AL+ REID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDRE
Sbjct: 122 TALRQPREIDQALVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
+EI+ FKP+EYW++ A L K D F A L K++ +L IG+ +A+ ++
Sbjct: 182 LEIETFKPREYWSLIATLATK-----DGAVFDARLVGADGKKIQRLDIGNGKDAEAFKKD 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A F V + R P+ TSTLQQ+A+ KL + TM++AQ+LYEGV + G
Sbjct: 237 LELATFSVANIEAKPAKRHPYPPFTTSTLQQEASRKLGLAPAQTMRIAQRLYEGVDI-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA + R +I + YG + P PRKY K KNAQEAHEAIR
Sbjct: 296 ETVGLITYMRTDGVDMAPEAVQSARRVIGKEYGDRYVPG-APRKYSTKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFRS 769
PTD+ RLP +S L+ + +LY LIW+RT+A QM+ A + + DI + R+
Sbjct: 355 PTDMSRLPKHVSKYLEPEQARLYDLIWTRTIASQMESAELERTTADITAQVGPRKLDLRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ ++F GF Y E+++++ E L +K GDPL + QH T
Sbjct: 415 TGQVIKFDGFLTLY----------NESKDDEADEDEGRLPPMKAGDPLERRRINASQHFT 464
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE SLVK++EELGIGRPSTYA+ L+ L+DR YV ++ + L PE +GR+V+AFL
Sbjct: 465 EPPPRYSEASLVKRMEELGIGRPSTYAAVLQTLRDREYVKIEKKRLVPEDKGRIVTAFLE 524
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F +Y FTAD+E +LD +S +WK +L D+W FS+ + L + +V L
Sbjct: 525 SFFRRYVEYDFTADLEEQLDRISNSEIDWKQVLRDFWRDFSAAIGETKELRMTEVLDALN 584
Query: 950 KTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK-TL 1003
G +F P+K R+CP CG G L K+ +FG+ FIGC+ +P C Y +
Sbjct: 585 DLLGPHIF---PDKGDGSNPRTCPTCGTGQLSLKLGKFGS--FIGCSNYPECKYTRQLAA 639
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
G + E D N K++G P + +V L+ G +G +VQLGE G PKR+S+
Sbjct: 640 SGVEGEGDGSSENGGQPGVKVLGTDPETGLEVTLRDGRFGPFVQLGE---GEKPKRSSLP 696
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
+ LE AL+LL P + HP+ G+PI++ + R G V+H + A N+ P
Sbjct: 697 KGMTPAQVDLEKALKLLALPRQVATHPESGEPILVSIGRYGPYVQHGKVYA----NLGPG 752
Query: 1124 DVTLE 1128
D LE
Sbjct: 753 DDVLE 757
>gi|15965053|ref|NP_385406.1| DNA topoisomerase I [Sinorhizobium meliloti 1021]
gi|384536707|ref|YP_005720792.1| DNA topoisomerase I [Sinorhizobium meliloti SM11]
gi|15074232|emb|CAC45879.1| Putative DNA topoisomerase I [Sinorhizobium meliloti 1021]
gi|336033599|gb|AEH79531.1| DNA topoisomerase I [Sinorhizobium meliloti SM11]
Length = 900
Score = 622 bits (1604), Expect = e-175, Method: Compositional matrix adjust.
Identities = 339/795 (42%), Positives = 485/795 (61%), Gaps = 35/795 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES +KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF M WEV A+
Sbjct: 8 NVVVVESPSKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVRPDEDFEMSWEVDGASAKR 67
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ LILA+DPDREGEAI+WH++++L+++ + + V RVVF+ IT+ ++
Sbjct: 68 MKDIADAVKSSDGLILATDPDREGEAISWHVLDLLRKKKVIGDK-PVKRVVFNAITKKAV 126
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+IDA+LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 127 LDAMAEPRDIDASLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 186
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +IG+ EA ++
Sbjct: 187 EAEIERFVTEEYWNISALLKTPRGDE-----FEARLVSADGKRLPPKAIGNGEEANRLKS 241
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++ A++ V+++ + V++NP+P + TSTLQQ A++KL FSA+ TM++AQKLYEGV +
Sbjct: 242 LLDGASY-VVESVEAKPVKRNPSPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVDI- 299
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA + R I ++G + PE+ PR Y K KNAQEAHEA
Sbjct: 300 GGETVGLITYMRTDGVQMAPEAIEAARQAIGSQFGERYLPEK-PRFYSTKAKNAQEAHEA 358
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D L+LY L+W R +A QM A + + +I NA +
Sbjct: 359 IRPTDFDRTPDQVRRFLDGDMLRLYDLVWKRGIASQMASAEIERTTAEIVADNAGKKAGL 418
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S + F GF AAY D+ + + +E+ R L + + L ++ QH
Sbjct: 419 RATGSVIRFDGFIAAYTDMKEDGEQADDGDEDGR------LPEINARENLAKQKINASQH 472
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE +L+KK+EELGIGRPSTYA+T+ L DR+YV + R L P+ +GR+V+AF
Sbjct: 473 FTEPPPRYSEATLIKKMEELGIGRPSTYAATVTTLIDRDYVEIDKRKLVPQAKGRLVTAF 532
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F+ +Y FTA +E +LD +SAG WK +L D+W F S + L + V
Sbjct: 533 LESFFTRYVEYDFTASLEEKLDQISAGELNWKDVLRDFWKDFFSQIEDTKELRVTNVLDA 592
Query: 948 LEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
L + +F P ++ R C VCG G L K+ ++GA F+GC+ +P CNY +
Sbjct: 593 LNEELAPLVF---PKREDGGDPRICQVCGTGKLSLKLGKYGA--FVGCSNYPECNYTRQL 647
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
+ + + N EP+ +G P + E++ L++G +G YVQ G+ G KRAS+
Sbjct: 648 SSDSNGDAEAAAAN----EPQSLGKDPHTGEEITLRNGRFGPYVQRGD---GKEAKRASL 700
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+I E AL LL P ++G HP+ G+ I + R G V H T A++
Sbjct: 701 PKGWTPAAIDHEKALALLSLPRDIGPHPESGKMISTGIGRYGPFVLHNGTYANLESVEDV 760
Query: 1123 NDVTLEKALEFLSGK 1137
+ L +A+ L+ K
Sbjct: 761 FSIGLNRAISVLADK 775
>gi|418054531|ref|ZP_12692587.1| DNA topoisomerase I [Hyphomicrobium denitrificans 1NES1]
gi|353212156|gb|EHB77556.1| DNA topoisomerase I [Hyphomicrobium denitrificans 1NES1]
Length = 983
Score = 622 bits (1604), Expect = e-175, Method: Compositional matrix adjust.
Identities = 356/821 (43%), Positives = 484/821 (58%), Gaps = 50/821 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VV+VES KAK I YLG Y+V+ SYGHVRDL A+ GSV PD DF+M WEV +
Sbjct: 67 NVVIVESAAKAKTINKYLGSGYKVIASYGHVRDLPAKDGSVEPDHDFAMHWEVDGKSQKI 126
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
++ I AL A+ LILA+DPDREGEAI+WHI+E+L + AL + V RV F+ IT+ SI
Sbjct: 127 MREIAEALKKADKLILATDPDREGEAISWHILEILNHKKALKKGTEVERVAFNAITKQSI 186
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
AL+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 187 LAALKEPRKIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 246
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ FK +EYWT+EA+L + + T L + L +L I A I+
Sbjct: 247 EAEIEAFKTEEYWTIEALLTTSKGEDIKT-----RLVAIEGSTLKKLDIKDEASATAIKA 301
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +F++ K++ R P+ TSTLQ DA+ KL FSA TM++AQ+LYEGV +
Sbjct: 302 ALEGRDFRIASIEKKAAKRNPYPPFTTSTLQMDASRKLGFSAKQTMQIAQRLYEGVDI-G 360
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I EA IR +I YG + P R+Y K KNAQEAHEAI
Sbjct: 361 GETVGLITYMRTDGVQIVPEAVSHIRDVISAEYGKQYTP--FAREYKTKAKNAQEAHEAI 418
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI---GNADESIVF 767
RPTD RR + L++D LY LIW RT+A QM PA + Q V+I G+ ++
Sbjct: 419 RPTDPRRKSDQVRKYLEKDQAALYDLIWKRTIASQMAPADIEQTAVEIETKGSDGKTYGL 478
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRY-------KENEENDRHEAFAILNSLKTGDPLYLG 820
R++ S ++F GF YE+ RY E E+ DR L L GD L
Sbjct: 479 RANGSVLQFDGFLRVYEEGRDDRFRYIEKGKDDPEGEDEDRR-----LPPLAEGDHLKDK 533
Query: 821 EVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFR 880
E+ QH TQPP R+SE +LVK++EELGIGRPSTYAST+ VL DR+YV ++ + L PE +
Sbjct: 534 EISADQHFTQPPPRFSEATLVKRMEELGIGRPSTYASTMAVLVDRDYVRIEKKRLIPEDK 593
Query: 881 GRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLH 940
GR+V AFL +F +Y FTAD+E +LD +S +K +L D+W +F + + L
Sbjct: 594 GRLVIAFLESFFKRYVEYDFTADLEEKLDLISNNELAYKEVLRDFWRQFIASVGDIKDLR 653
Query: 941 IHQVEKMLEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVS-RFGAGYFIGCNQHP 994
+ V + L + G +F P+K R CP CG+G L K+S ++GA FIGC +P
Sbjct: 654 VGDVLEALNEMLGPHVF---PDKGDGSDPRLCPKCGQGRLSLKISGKYGA--FIGCGNYP 708
Query: 995 RCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTG 1054
CNY + L D+ EDTL + K++G++ V L++G +G Y+QLGE
Sbjct: 709 DCNY-TRQLTPSDNGEDTL-------DGKVLGYNDDGL-AVTLRTGRFGPYLQLGEAEGD 759
Query: 1055 YLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIA 1114
PKR+S+ D ++ E A++LL P ++G HP +G + L R G + H A
Sbjct: 760 EKPKRSSIPRGIDAATLDFEKAMQLLSLPRDVGEHPTEGGMVTAGLGRYGPFILHEHDGA 819
Query: 1115 SVPKNMKPND----VTLEKALEFLSGKDVRRCGRPKGKPKR 1151
N++ + V L +A+ L+ K R G K + +R
Sbjct: 820 KTYVNLESIEDVFTVGLNRAVTLLAEK---RAGGGKSRFQR 857
>gi|157825575|ref|YP_001493295.1| DNA topoisomerase I [Rickettsia akari str. Hartford]
gi|157799533|gb|ABV74787.1| DNA topoisomerase I [Rickettsia akari str. Hartford]
Length = 776
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 329/790 (41%), Positives = 487/790 (61%), Gaps = 23/790 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKASKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+++ LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKDAKKADSVYLATDPDREGESISWHVAEVIKEKNKVKSDDFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
+I+ FK +EYW + + S + F A LTH ++L + SI + +AKD+ +K
Sbjct: 183 DKIERFKSEEYWDISIKI-----QSSNNELFTAQLTHVNDQKLEKFSIINAKDAKDLTEK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V K K+ R P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQKFHVDKIEKKQQKRAPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI YG+ + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDTSYGNKYLP-SSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L LL++D KLY LIW RT+ACQM+ + + + + ++ + +++
Sbjct: 356 PTNITYTPDNLKELLEKDYYKLYELIWKRTVACQMENVIMDLVVASLASENKEYLAKATG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK + L E+ QH T+P
Sbjct: 416 STITFDGFYKI----------YRESVDDEDEEENKMLPPLKEQESLKTKEIIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YVT++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVTLEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F++ I ++ ++K
Sbjct: 526 FRKYVEYDFTAGLENELDEIAAGKLEWKAALNNFWSGFNNNIKSVNEQKITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKVCPSCKTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ + + + K++G E + LK GPYG Y+Q GE PKR+ + I + +
Sbjct: 642 NEAELSAIPNGNKILGTDKDGIE-IYLKKGPYGPYIQHGEQEGKVKPKRSPIPAILNQND 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITLE AL+LL P+ +G H G+ IM+ + G +++ S+PK +++L+ A
Sbjct: 701 ITLEIALKLLSLPLKIGIHKDSGEEIMIGYGKFGPYIKYMSKFISIPKKYDFLNLSLDDA 760
Query: 1131 LEFLSGKDVR 1140
++ + + +
Sbjct: 761 MKLIEDNNAK 770
>gi|440226278|ref|YP_007333369.1| DNA topoisomerase I [Rhizobium tropici CIAT 899]
gi|440037789|gb|AGB70823.1| DNA topoisomerase I [Rhizobium tropici CIAT 899]
Length = 891
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 343/805 (42%), Positives = 484/805 (60%), Gaps = 35/805 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M+WEV A+
Sbjct: 4 NVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDGASQKR 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I AL ++ LILA+DPDREGEAI+WH++++L ++ ++ V RVVF+ IT+ ++
Sbjct: 64 IKDIADALKTSDGLILATDPDREGEAISWHVLDVLNKKRVINGK-PVKRVVFNAITKKAV 122
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 123 LDAMAEPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 182
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +IG+ EA ++
Sbjct: 183 ESEIERFISEEYWNLSAILKTPRGDE-----FEARLVSADGKRLQPRAIGNGEEAGKLKA 237
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A++ V+ + V++NP+P + TSTLQQ A++KL FSA+ TM++AQKLYEGV +
Sbjct: 238 LLEGASY-VVDTVEAKPVKRNPSPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVDI- 295
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R I ++G + PE+ R Y K KNAQEAHEA
Sbjct: 296 GGETVGLITYMRTDGVQMAPEAIDAARHAIANQFGDRYLPEKA-RFYSTKAKNAQEAHEA 354
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R+P + LD+D L+LY LIW R +A QM A + + V+I NA
Sbjct: 355 IRPTDFDRVPDRIRKFLDDDQLRLYDLIWKRGIASQMASAEIERTTVEILADNAGNKAGL 414
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D E L + + L ++ QH
Sbjct: 415 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDSEEGGRLPEINARENLAKQKINSTQH 468
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TL L+DR+YVT+ R L P+ +GR+V+AF
Sbjct: 469 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLATLRDRDYVTIDKRKLVPQAKGRLVTAF 528
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTAD+E +LD +SAG WK +L D+W F + + L + V
Sbjct: 529 LESFFTKYVEYDFTADLEEKLDRISAGELNWKDVLRDFWRDFFAQIEDTKELRVTNVLDA 588
Query: 948 LEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
L +F P ++ R C VCG G L K+ ++GA F+GC+ +P CNY +
Sbjct: 589 LNDALAPLVF---PKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNYTRQL 643
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
E + ++EPK +G P + E++ L+SG +G Y+Q G+ G KRAS+
Sbjct: 644 ----SSEGGAEAESNGLNEPKALGTDPVTGEELTLRSGRFGPYIQRGD---GKDAKRASL 696
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+ I E A+ L+ P ++G HP+ G+ I + R G + H + A++
Sbjct: 697 PRGWKPEDIDYEKAMALISLPRDIGKHPETGKMISSGIGRYGPFLLHDGSYANLESVEDV 756
Query: 1123 NDVTLEKALEFLSGKDVRRCGRPKG 1147
V L +A+ L+ K + G +G
Sbjct: 757 FTVGLNRAVTVLAEKQSKAGGGARG 781
>gi|295690156|ref|YP_003593849.1| DNA topoisomerase I [Caulobacter segnis ATCC 21756]
gi|295432059|gb|ADG11231.1| DNA topoisomerase I [Caulobacter segnis ATCC 21756]
Length = 894
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 361/807 (44%), Positives = 482/807 (59%), Gaps = 46/807 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y VL SYGH+RDL ++ GSV PD+DF+M WEV + A
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYTVLASYGHIRDLPSKDGSVEPDNDFAMSWEVDAKASKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ I AL A+ LILA+DPDREGEAI+WH++E+L ++ AL + +V RV F+ IT+ ++
Sbjct: 62 VSDIVDALKKADRLILATDPDREGEAISWHVLEVLNKKKALKDK-SVQRVTFNAITKTAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++A R++D LV+AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ DR
Sbjct: 121 TEAMKAPRDLDMELVEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLVVDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI+ FK QEYWTVEA + S + F A L + K+L + +G+ T A +
Sbjct: 181 EIEIERFKTQEYWTVEADV------SAGSDPFLARLVKHEGKKLTKFDLGNETSALAAKA 234
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +A F+V K+ R P+ TSTLQQ+AA KL FSA TM+ AQKLYEGV +
Sbjct: 235 AVQAAVFKVEAVEKKPGKRSPAPPFTTSTLQQEAARKLGFSAQRTMQAAQKLYEGVDI-G 293
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA E R +I + YG + P+ PR Y K KNAQEAHEAI
Sbjct: 294 GETVGLITYMRTDGVSMAPEAITEARDVIGKVYGKEYVPDV-PRLYKSKAKNAQEAHEAI 352
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT + R P L LD + +LY LIW RT+A QM+ A + + VD+ +AD R++
Sbjct: 353 RPTSMGRNPGSLR--LDPELGRLYELIWKRTIASQMESARIERTTVDLESADGKTGLRAT 410
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
V+F G+ A YE E +++ E A L ++ G P + E QH T+
Sbjct: 411 GQVVQFPGYLAVYE----------EGRDDEGDEDSARLPAIVEGSPAQVREARADQHFTE 460
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKK+EELGIGRPSTYAS L VL+DR YV ++ + PE +GR+V+AFL
Sbjct: 461 PPPRYSEASLVKKMEELGIGRPSTYASVLGVLRDREYVRMEKQRFIPEDKGRLVTAFLEQ 520
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F +Y FTA +E +LD VS G +WK L D+W F + L V L +
Sbjct: 521 FFKRYVEYDFTAALEEQLDLVSDGKLDWKQFLRDFWKDFHAAVGEIAELRTTNVLDALNE 580
Query: 951 TFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
G +F P+K R CP CG G L K +FGA FIGC+ +P C Y +
Sbjct: 581 ALGPHIF---PDKGDGSNPRLCPTCGTGQLSLKTGKFGA--FIGCSNYPECRYTRQLGVS 635
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYV-QLGEDRTGYLPKRASVSH 1064
+ D E + D K +G +PA+ V LK+G +G YV +L + G PKR+S+
Sbjct: 636 EGDGE-----AESAD--KELGVNPATGRAVWLKNGRFGPYVEELAAE--GDKPKRSSLPK 686
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
+I LE AL LL P +G HP DG+ I L R G V H T A++ + D
Sbjct: 687 GWIASAIDLEKALRLLSLPREVGKHPDDGKVITAGLGRFGPFVLHDGTYANLENADEVFD 746
Query: 1125 VTLEKALEFLSGKDVRRCGRPKGKPKR 1151
V L +A+ L+ K R G G+P+R
Sbjct: 747 VGLNRAVAILADK---RAG--GGRPQR 768
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 22/129 (17%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
P+ +G HP + + G +G +V D T A++ + +V + L A+ +L
Sbjct: 705 PREVGKHPDDGKVITAGLGRFGPFVL--HDGT-----YANLENADEVFDVGLNRAVAILA 757
Query: 1081 --------------RYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
LGNHP+DG+PI + R G ++H T A+VPK P +T
Sbjct: 758 DKRAGGGRPQRGAAAALAELGNHPEDGKPIRVLSGRFGPYIKHGDTNANVPKGKDPAAIT 817
Query: 1127 LEKALEFLS 1135
LE+AL ++
Sbjct: 818 LEEALALIA 826
>gi|146341418|ref|YP_001206466.1| DNA topoisomerase I [Bradyrhizobium sp. ORS 278]
gi|146194224|emb|CAL78246.1| DNA topoisomerase I [Bradyrhizobium sp. ORS 278]
Length = 915
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 338/796 (42%), Positives = 487/796 (61%), Gaps = 42/796 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL S+GHVRDL A++GSV P+++F M+WEV A
Sbjct: 2 NIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPEENFRMIWEVDPKAAGR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I +L GA+ LILA+DPDREGEAI+WH++E+++++ AL + + RVVF+ IT+ ++
Sbjct: 62 LNDIAKSLKGADRLILATDPDREGEAISWHVLEVMKEKRALKDQ-KIERVVFNAITKQAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 SEAMKNPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F P+EYW++ A L DTF A L K++ +L IG+ EA+D +
Sbjct: 181 ELEIEKFVPREYWSLIATLATPRG---DTFE--ARLVGADGKKIQRLDIGTGAEAEDFKN 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+N+A + V + R P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEG+ +
Sbjct: 236 ALNAATYSVATVDAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I+ EA + R +I E YG+ + P+ PR+Y K KNAQEAHEAI
Sbjct: 295 GETTGLITYMRTDGVQIAPEAITQARKVIGEIYGNKYVPDS-PRQYQTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD+ R PA L LD+D KLY LIW+RT+A QM+ A + + VDI ++ R
Sbjct: 354 RPTDLSRKPAELRKRLDDDQAKLYELIWTRTIASQMESAELERTTVDIVAKAGGRTLELR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ ++F GF A Y+ E +++ E L + G+ L + + QH
Sbjct: 414 ATGQVIKFDGFLALYQ----------EGRDDEEDEDSRRLPQMSQGEALKRQNLAVTQHF 463
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP R+SE SLVK++EELGIGRPSTYAS L VL+ R YV ++ + L+ E +GR+V AFL
Sbjct: 464 TEPPPRFSEASLVKRMEELGIGRPSTYASILDVLKARGYVKLEKKRLHGEDKGRVVIAFL 523
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F +Y FTAD+E +LD +S W+ +L D+W+ F + L + QV L
Sbjct: 524 ENFFRRYVEYDFTADLEEQLDRISNNEIAWQQVLKDFWTGFIGAVDDIKDLRVAQVLDAL 583
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
++ G ++ P +D R CP CG G L K +FGA F+GC+ +P C Y
Sbjct: 584 DEMLGPHIYP--PREDGGDVRQCPTCGTGRLNLKAGKFGA--FVGCSNYPECRYTR---- 635
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRAS 1061
L ++ +++G P S +V +K+G +G Y+QLGE + G PKRA
Sbjct: 636 -------PLAADSEAAADRMLGQDPDSGLEVAVKAGRFGPYIQLGEQKDYAEGEKPKRAG 688
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + L+ AL+LL P +G HP+ G PI L R G V+H +T AS+ +
Sbjct: 689 IPKGTQPSDVDLDLALKLLSLPREIGKHPETGLPITAGLGRFGPFVKHDKTYASLEAGDE 748
Query: 1122 PNDVTLEKALEFLSGK 1137
D+ L +A+ ++ K
Sbjct: 749 VFDIGLNRAVTLIAEK 764
>gi|148259742|ref|YP_001233869.1| DNA topoisomerase I [Acidiphilium cryptum JF-5]
gi|146401423|gb|ABQ29950.1| DNA topoisomerase I [Acidiphilium cryptum JF-5]
Length = 891
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 342/794 (43%), Positives = 479/794 (60%), Gaps = 34/794 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++VVVES KAK I YLGD + VL S+GHVRDL + GSVRPD+DF+M WE +
Sbjct: 3 AIVVVESPAKAKTINKYLGDGFTVLASFGHVRDLPPKDGSVRPDEDFAMSWEEDARGDRQ 62
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +I AL GA+ L LA+DPDREGEAI+WH+ ML+ ++ L + V R+ F+EIT++++
Sbjct: 63 VAAIAKALKGADTLYLATDPDREGEAISWHVRAMLEARNVL-KGKQVRRITFNEITKSAV 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ AL+A R++D L++AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+R
Sbjct: 122 QAALRAPRDLDTPLIEAYLARRALDYLVGFTLSPVLWRKLPGSKSAGRVQSVALRLICER 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT+EA E + F A LTH ++L+Q + A +
Sbjct: 182 EAEIELFRPREYWTIEA-----EFRTPAGAPFRARLTHLDGRKLDQFDLADKAAADAAKA 236
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ F V+ K+ + R P P+ TSTLQQDA+ KL+ +A M+ AQ+LYEGV++
Sbjct: 237 AVERGAFSVVSIEKKRVRRNPPPPFTTSTLQQDASRKLHMTAQAIMRTAQQLYEGVEI-G 295
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA R + + +G+++ P PR+Y K KNAQEAHEAI
Sbjct: 296 GETVGLITYMRTDGVQMAREAITAARQQVKDAFGANYLPA-APREYQSKAKNAQEAHEAI 354
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD P + L + +LY LI+ R +A QMQ A + Q V++ +A R++
Sbjct: 355 RPTDFTLTPERAARHLSPEQARLYELIYKRALASQMQSAELDQTTVELADA-AGTTLRAT 413
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF Y + +E+ E +L + DPL G V +QH TQ
Sbjct: 414 GSILAFDGFLKLYRE---------GMDEDPEDETARLLPPMAKSDPLASGPVTAEQHFTQ 464
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE +LVK++EELGIGRPSTYAS L VL++RNYV +++R PE RGR+V+AFL
Sbjct: 465 PPPRYSEATLVKRMEELGIGRPSTYASILTVLRERNYVRMENRRFIPEDRGRLVTAFLVS 524
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + FTAD+E +LD VS G +W+ ++ D+W+ FS + L I V L++
Sbjct: 525 FFGRYVETGFTADLEEKLDEVSDGRLDWRSVMRDFWADFSGAVEQIKDLKISDVIDALDE 584
Query: 951 TFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK-TLYGDD 1007
G F + + R C CG G L ++ RFGA FIGC+ +P C Y + + G +
Sbjct: 585 ELGPHFFPAREDGSDPRVCQACGTGRLGLRLGRFGA--FIGCSNYPECQYTRRLAVEGGE 642
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLPKRASVS 1063
DE D L+ D KL+G + A V L+ GPYG YVQLG ED+ P+RA++
Sbjct: 643 DEGDQLR-----DGMKLLGEN-AEGIPVTLRRGPYGLYVQLGEPDPEDKKAK-PRRAALP 695
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
++ITLE A+ LL P +G HP+ Q I + R G V+ AS+ K+
Sbjct: 696 RGMSGETITLEQAIGLLSLPRVIGVHPETKQEIQAGIGRFGPYVKMGPIFASLDKDDDVL 755
Query: 1124 DVTLEKALEFLSGK 1137
V L +A+ L+ K
Sbjct: 756 AVGLNRAVMVLAKK 769
>gi|326403291|ref|YP_004283372.1| DNA topoisomerase I [Acidiphilium multivorum AIU301]
gi|325050152|dbj|BAJ80490.1| DNA topoisomerase I [Acidiphilium multivorum AIU301]
Length = 891
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 341/794 (42%), Positives = 479/794 (60%), Gaps = 34/794 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++VVVES KAK I YLGD + VL S+GHVRDL + GSVRPD+DF+M WE +
Sbjct: 3 AIVVVESPAKAKTINKYLGDGFTVLASFGHVRDLPPKDGSVRPDEDFAMSWEEDARGDRQ 62
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +I AL GA+ L LA+DPDREGEAI+WH+ ML+ ++ L + V R+ F+E+T++++
Sbjct: 63 VAAIAKALKGADTLYLATDPDREGEAISWHVRAMLEARNVL-KGKQVRRITFNEVTKSAV 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ AL+A R++D L++AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+R
Sbjct: 122 QAALRAPRDLDTPLIEAYLARRALDYLVGFTLSPVLWRKLPGSKSAGRVQSVALRLICER 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT+EA E + F A LTH ++L+Q + A +
Sbjct: 182 EAEIELFRPREYWTIEA-----EFRTPAGAPFRARLTHLDGRKLDQFDLADKAAADAAKA 236
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ F V+ K+ + R P P+ TSTLQQDA+ KL+ +A M+ AQ+LYEGV++
Sbjct: 237 AVERGAFSVVSIEKKRVRRNPPPPFTTSTLQQDASRKLHMTAQAIMRTAQQLYEGVEI-G 295
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA R + + +G+++ P PR+Y K KNAQEAHEAI
Sbjct: 296 GETVGLITYMRTDGVQMAREAITAARQQVKDAFGANYLPA-APREYQSKAKNAQEAHEAI 354
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD P + L + +LY LI+ R +A QMQ A + Q V++ +A R++
Sbjct: 355 RPTDFTLTPERAARHLSPEQARLYELIYKRALASQMQSAELDQTTVELADA-AGTTLRAT 413
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF Y + +E+ E +L + DPL G V +QH TQ
Sbjct: 414 GSILAFDGFLKLYRE---------GMDEDPEDETARLLPPMAKSDPLASGPVTAEQHFTQ 464
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE +LVK++EELGIGRPSTYAS L VL++RNYV +++R PE RGR+V+AFL
Sbjct: 465 PPPRYSEATLVKRMEELGIGRPSTYASILTVLRERNYVRMENRRFIPEDRGRLVTAFLVS 524
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + FTAD+E +LD VS G +W+ ++ D+W+ FS + L I V L++
Sbjct: 525 FFGRYVETGFTADLEEKLDEVSDGRLDWRSVMRDFWADFSGAVEQIKDLKISDVIDALDE 584
Query: 951 TFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK-TLYGDD 1007
G F + + R C CG G L ++ RFGA FIGC+ +P C Y + + G +
Sbjct: 585 ELGPHFFPAREDGSDPRVCQACGTGRLGLRLGRFGA--FIGCSNYPECQYTRRLAVEGGE 642
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLPKRASVS 1063
DE D L+ D KL+G + A V L+ GPYG YVQLG ED+ P+RA++
Sbjct: 643 DEGDQLR-----DGMKLLGEN-AEGIPVTLRRGPYGLYVQLGEPDPEDKKAK-PRRAALP 695
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
++ITLE A+ LL P +G HP+ Q I + R G V+ AS+ K+
Sbjct: 696 RGMSGETITLEQAIGLLSLPRVIGVHPETKQEIQAGIGRFGPYVKMGPIFASLDKDDDVL 755
Query: 1124 DVTLEKALEFLSGK 1137
V L +A+ L+ K
Sbjct: 756 AVGLNRAVMVLAKK 769
>gi|338989349|ref|ZP_08634204.1| DNA topoisomerase 1 [Acidiphilium sp. PM]
gi|338205739|gb|EGO94020.1| DNA topoisomerase 1 [Acidiphilium sp. PM]
Length = 891
Score = 620 bits (1600), Expect = e-174, Method: Compositional matrix adjust.
Identities = 342/794 (43%), Positives = 479/794 (60%), Gaps = 34/794 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++VVVES KAK I YLGD + VL S+GHVRDL + GSVRPD+DF+M WE +
Sbjct: 3 AIVVVESPAKAKTINKYLGDGFTVLASFGHVRDLPPKDGSVRPDEDFAMSWEEDARGDRQ 62
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +I AL GA+ L LA+DPDREGEAI+WH+ ML+ ++ L + V R+ F+EIT++++
Sbjct: 63 VAAIAKALKGADTLYLATDPDREGEAISWHVRAMLEARNVL-KGKQVRRITFNEITKSAV 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ AL+A R++D L++AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+R
Sbjct: 122 QAALRAPRDLDTPLIEAYLARRALDYLVGFTLSPVLWRKLPGSKSAGRVQSVALRLICER 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT+EA E + F A LTH ++L+Q + A +
Sbjct: 182 EAEIELFRPREYWTIEA-----EFRTPAGAPFRARLTHLDGRKLDQFDLADKAAADAAKA 236
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ F V+ K+ + R P P+ TSTLQQDA+ KL+ +A M+ AQ+LYEGV++
Sbjct: 237 AVERGAFSVVSIEKKRVRRNPPPPFTTSTLQQDASRKLHMTAQAIMRTAQQLYEGVEI-G 295
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA R + + +G+++ P PR+Y K KNAQEAHEAI
Sbjct: 296 GETVGLITYMRTDGVQMAREAITAARQQVKDAFGANYLPA-APREYQSKAKNAQEAHEAI 354
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD P + L + +LY LI+ R +A QMQ A + Q V++ +A R++
Sbjct: 355 RPTDFTLTPERAARHLSPEQARLYELIYKRALASQMQSAELDQTTVELADA-AGTTLRAT 413
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF Y + +E+ E +L + DPL G V +QH TQ
Sbjct: 414 GSILAFDGFLKLYRE---------GMDEDPEDETARLLPPMAKSDPLASGPVTAEQHFTQ 464
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE +LVK++EELGIGRPSTYAS L VL++RNYV +++R PE RGR+V+AFL
Sbjct: 465 PPPRYSEATLVKRMEELGIGRPSTYASILTVLRERNYVRMENRRFIPEDRGRLVTAFLVS 524
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + FTAD+E +LD VS G +W+ ++ D+W+ FS + L I V L++
Sbjct: 525 FFGRYVETGFTADLEEKLDEVSDGRLDWRSVMRDFWADFSGAVEQIKDLKISDVIDALDE 584
Query: 951 TFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK-TLYGDD 1007
G F + + R C CG G L ++ RFGA FIGC+ +P C Y + + G +
Sbjct: 585 ELGPHFFPAREDGSDPRVCQACGTGRLGLRLGRFGA--FIGCSNYPECQYTRRLAVEGGE 642
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG----EDRTGYLPKRASVS 1063
DE D L+ D KL+G + A V L+ GPYG YVQLG ED+ P+RA++
Sbjct: 643 DEGDQLR-----DGMKLLGEN-AEGIPVTLRRGPYGLYVQLGEPDPEDKKAK-PRRAALP 695
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
++ITLE A+ LL P +G HP+ Q I + R G V+ AS+ K+
Sbjct: 696 RGMSGETITLEQAIGLLSLPRVIGVHPETKQEIQAGIGRFGPYVKMGPIFASLDKDDDVL 755
Query: 1124 DVTLEKALEFLSGK 1137
V L +A+ L+ K
Sbjct: 756 AVGLNRAVMVLAKK 769
>gi|429768996|ref|ZP_19301124.1| DNA topoisomerase I [Brevundimonas diminuta 470-4]
gi|429188347|gb|EKY29235.1| DNA topoisomerase I [Brevundimonas diminuta 470-4]
Length = 875
Score = 620 bits (1600), Expect = e-174, Method: Compositional matrix adjust.
Identities = 357/794 (44%), Positives = 475/794 (59%), Gaps = 39/794 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+VL SYGHVRDL ++ GSV PDDDF+M WEV + A
Sbjct: 2 NLVIVESPAKAKTINKYLGSDYKVLASYGHVRDLPSKDGSVLPDDDFAMHWEVDAKASKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A A+ +ILA+DPDREGEAI+WH++E+L ++ AL ++ V RV F+ IT++++
Sbjct: 62 LSEIAEAAKAADRVILATDPDREGEAISWHVLEILNKKKAL-KDTDVQRVTFNAITKSAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R++D LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL ++ DR
Sbjct: 121 LEAMANPRQLDMELVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRIVVDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
EMEI+ FK QEYW++EA L D+ F A L + KR+ +L I S A +
Sbjct: 181 EMEIERFKAQEYWSIEADL------IADSPPFTARLVKHEGKRVQRLDIVSEAMAMAARE 234
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++S +F + K+ R P+ TSTLQQ+AA KL F+A TM+ AQKLYEGV D
Sbjct: 235 AVHSGDFTIRSVEKKPAKRSPAPPFTTSTLQQEAARKLGFTAQRTMQAAQKLYEGV---D 291
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
T GLITYMRTDG++++ E + R I +R+G + P E PR Y K KNAQEAHEAI
Sbjct: 292 DTG-GLITYMRTDGVYVTPEGIAQAREAIGQRFGPAYVPAE-PRYYKTKAKNAQEAHEAI 349
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT+I R P L LD D +LY LIW R +A QM+ A + + V+I D R++
Sbjct: 350 RPTNILRSPDTLR--LDSDLQRLYELIWKRMIASQMESARLDRTTVEIETPDGQTGLRAT 407
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
V F GF AAYE+ + E+EE++ L +LK G + + QH T+
Sbjct: 408 GQVVVFDGFIAAYEEGRDEKQKGAEDEEDEGGR----LPALKEGAKAKVEAIRTDQHFTE 463
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP R+SE +LVKKLEELGIGRPSTYAS L L+DR YV + +PE +GR+V+AFL
Sbjct: 464 PPPRFSEATLVKKLEELGIGRPSTYASILTTLRDREYVRMDKNRFFPEDKGRLVTAFLEQ 523
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F++ +Y FTA +ET+LD VSAG +WK LL +W F + A L + L +
Sbjct: 524 FFAKWVEYDFTAALETQLDEVSAGDLDWKTLLRRFWQDFHAATQAAGELRTTAILDHLNE 583
Query: 951 TFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
G +F P+K R CPVC EG L K SRFGA FIGC+++P C Y
Sbjct: 584 ALGPHIF---PDKGDGSDPRQCPVCHEGQLSLKTSRFGA--FIGCSRYPECKYTRPVASP 638
Query: 1006 D--DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
D D ++ R VD PA+ + V LK G +G YV+ PKR+S+
Sbjct: 639 DAADGGAESGDRELGVD--------PATGQPVHLKIGRFGPYVETTPP-DAEKPKRSSLP 689
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
S+ LE AL LL P ++G HP+DG+ I L R G V H T A+V +
Sbjct: 690 KGWTPTSMDLEKALRLLSLPRDVGPHPEDGKMITASLGRYGPFVAHAGTYANVADIEEVF 749
Query: 1124 DVTLEKALEFLSGK 1137
DV L +A+ L+ K
Sbjct: 750 DVGLNRAVALLAEK 763
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 21/120 (17%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
P+ +G HP + + G YG +V + A+V+ I++V + L A+ LL
Sbjct: 709 PRDVGPHPEDGKMITASLGRYGPFV-------AHAGTYANVADIEEVFDVGLNRAVALLA 761
Query: 1081 ------------RYPV-NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
P+ LG HP+ G+ + + R G V+ + A++PK P D+TL
Sbjct: 762 EKRAGRAGRASAAAPLKELGAHPETGEAVQVMAGRYGPYVKSGKINATLPKGTAPEDMTL 821
>gi|148256080|ref|YP_001240665.1| DNA topoisomerase I [Bradyrhizobium sp. BTAi1]
gi|146408253|gb|ABQ36759.1| DNA topoisomerase I [Bradyrhizobium sp. BTAi1]
Length = 916
Score = 620 bits (1600), Expect = e-174, Method: Compositional matrix adjust.
Identities = 340/796 (42%), Positives = 484/796 (60%), Gaps = 42/796 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL S+GHVRDL A++GSV PD++F M+WEV A
Sbjct: 2 NIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDENFRMIWEVDPKAAGR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I +L A+ LILA+DPDREGEAI+WH++E+L+++ AL + + RVVF+ IT+ ++
Sbjct: 62 LNDIAKSLKNADRLILATDPDREGEAISWHVLEVLKEKRALKDQ-KIERVVFNAITKQAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 SEAMKHPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F P+EYW++ A L DTF A L K++ +L IG+ EA+D +Q
Sbjct: 181 ELEIEKFVPREYWSLIATLATPRG---DTFE--ARLVGADGKKIQRLDIGTGAEAEDFKQ 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+N+A++ V + R P+ TSTLQQ+A+ KL F+ +TM++AQ+LYEG+ +
Sbjct: 236 ALNAASYTVATVDAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I A + R +I E YG+ + P+ PR+Y K KNAQEAHEAI
Sbjct: 295 GETTGLITYMRTDGVQIDGSAITQARKVIGEIYGNKYVPDS-PRQYQTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD+ R PA L LD+D KLY LIW+RT+A QM+ A + + VDI ++ R
Sbjct: 354 RPTDLSRKPADLRKRLDDDQAKLYELIWTRTIASQMESAELERTTVDIIAKAGGRTLELR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ V+F GF A Y+ E +++ E L + +PL + + QH
Sbjct: 414 ATGQVVKFDGFLALYQ----------EGRDDEEDEDSRRLPQMSPNEPLKRQNLAVTQHF 463
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP R+SE SLVK++EELGIGRPSTYAS L VL+ R YV ++ + L+ E +GR+V AFL
Sbjct: 464 TEPPPRFSEASLVKRMEELGIGRPSTYASILDVLKARGYVKLEKKRLHGEDKGRVVIAFL 523
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F +Y FTAD+E +LD +S W+ +L D+W+ F + L + QV L
Sbjct: 524 ENFFRRYVEYDFTADLEEQLDRISNNEIAWQQVLKDFWTGFIGAVDDIKDLRVAQVLDAL 583
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
++ G ++ P D R CP CG G L K +FGA F+GC+ +P C Y
Sbjct: 584 DEMLGPHIYP--PRADGGDVRQCPTCGTGRLNLKAGKFGA--FVGCSNYPECRYTR---- 635
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRAS 1061
L ++ +++G P S V +K+G +G Y+QLGE + G PKRA
Sbjct: 636 -------PLAADSEAAADRILGQDPDSGLDVAVKAGRFGPYIQLGEQKDYAEGEKPKRAG 688
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + L+ AL+LL P +G HP+ G PI L R G V+H +T AS+ +
Sbjct: 689 IPKGTQPSDVDLDLALKLLSLPREIGKHPETGLPITAGLGRFGPFVKHDKTYASLEAGDE 748
Query: 1122 PNDVTLEKALEFLSGK 1137
D+ L +A+ ++ K
Sbjct: 749 VFDIGLNRAVTLIAEK 764
>gi|374319151|ref|YP_005065650.1| DNA topoisomerase I [Rickettsia slovaca 13-B]
gi|383751096|ref|YP_005426197.1| DNA topoisomerase I [Rickettsia slovaca str. D-CWPP]
gi|360041700|gb|AEV92082.1| DNA topoisomerase I [Rickettsia slovaca 13-B]
gi|379774110|gb|AFD19466.1| DNA topoisomerase I [Rickettsia slovaca str. D-CWPP]
Length = 776
Score = 620 bits (1599), Expect = e-174, Method: Compositional matrix adjust.
Identities = 328/784 (41%), Positives = 479/784 (61%), Gaps = 23/784 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGESISWHVAEVIKEKNQVKSDDFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTHVNDQKLEKFSIINEKNAKDLTKK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQKFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y K+KNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKSYGDKYLP-TSPRIYKSKIKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L LD+D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLDKDYYKLYELIWKRTIACQMENVIMDLVVANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK +PL EV QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESMDDEAEEENKMLPPLKEQEPLKTKEVIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 526 FKKYVEYDFTAGLENELDAIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKICPSCNTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ + E K++G E + LK GPYG Y+QLG+ PKR+ V + +
Sbjct: 642 NEGEPAAMPSENKVLGTDKDGVE-IYLKKGPYGPYIQLGKQEGKVKPKRSPVPASLNQND 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITL+ AL+LL P+ +G H + IM+ + G +++ SV K +++L+ A
Sbjct: 701 ITLDIALKLLSLPLKIGIHKDSDEEIMIGYGKFGPYIKYMGQFISVQKKYDFLNLSLDDA 760
Query: 1131 LEFL 1134
++ +
Sbjct: 761 MKLI 764
>gi|150396155|ref|YP_001326622.1| DNA topoisomerase I [Sinorhizobium medicae WSM419]
gi|150027670|gb|ABR59787.1| DNA topoisomerase I [Sinorhizobium medicae WSM419]
Length = 914
Score = 620 bits (1598), Expect = e-174, Method: Compositional matrix adjust.
Identities = 342/795 (43%), Positives = 483/795 (60%), Gaps = 35/795 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES +KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF M WEV A+
Sbjct: 22 NVVVVESPSKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVRPDEDFEMSWEVDGASAKR 81
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ LILA+DPDREGEAI+WH++++L+++ L + V RVVF+ IT+ ++
Sbjct: 82 MKDIADAVKASDGLILATDPDREGEAISWHVLDLLRKKKVLGDK-PVKRVVFNAITKKAV 140
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+IDA+LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 141 LDAMAQPRDIDASLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 200
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +IG+ EA ++
Sbjct: 201 ESEIERFVTEEYWNISALLKTPRGDE-----FEARLVSADGKRLPAKAIGNGEEANRLKT 255
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++ A++ V+++ + V++NP+P + TSTLQQ A++KL FSA+ TM++AQKLYEG+ +
Sbjct: 256 LLDGASY-VVESVEAKPVKRNPSPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGIDI- 313
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R I ++G + PE+ PR Y K KNAQEAHEA
Sbjct: 314 GGETVGLITYMRTDGVQMAPEAIDAARQAIGSQFGERYLPEK-PRFYSTKAKNAQEAHEA 372
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D L+LY L+W R +A QM A + + +I NA +
Sbjct: 373 IRPTDFNRTPDQVRRFLDGDMLRLYDLVWKRGIASQMASAEIERTTAEIVADNAGKRAGL 432
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S + F GF AAY D+ + + +E+ R L + + L ++ QH
Sbjct: 433 RATGSVIRFDGFIAAYTDMKEDGEQTDDGDEDGR------LPEINARENLAKQKINASQH 486
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE +L+KK+EELGIGRPSTYA+T+ L DR+YV + R L P+ +GR+V+AF
Sbjct: 487 FTEPPPRYSEATLIKKMEELGIGRPSTYAATVTTLIDRDYVEIDKRKLLPQAKGRLVTAF 546
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F+ +Y FTA +E +LD +SAG WK +L D+W F S + L + V
Sbjct: 547 LESFFTRYVEYDFTASLEEKLDRISAGELNWKDVLRDFWKDFFSQIEDTKELRVTNVLDA 606
Query: 948 LEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
L + +F P ++ R C VCG G L K+ ++GA F+GC+ +P CNY +
Sbjct: 607 LNEELAPLVF---PKREDGGDPRICQVCGTGKLSLKLGKYGA--FVGCSNYPECNYTRQ- 660
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
D D +N EP+ +G P + E++ L++G +G YVQ G+ G KRAS+
Sbjct: 661 -LSSDSSGDAEAAASN--EPQSLGKDPHTGEEITLRNGRFGPYVQRGD---GKEAKRASL 714
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+I E AL LL P +LG HP+ G+ I + R G V H T A++
Sbjct: 715 PKGWTPATIDHEKALALLSLPRDLGPHPETGKMISAGIGRYGPFVLHNGTYANLESVEDV 774
Query: 1123 NDVTLEKALEFLSGK 1137
+ L +A L+ K
Sbjct: 775 FSIGLNRATSVLADK 789
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 26/144 (18%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
P+ +G HP + + + G YG +V + A++ ++DV SI L A +L
Sbjct: 735 PRDLGPHPETGKMISAGIGRYGPFVL-------HNGTYANLESVEDVFSIGLNRATSVLA 787
Query: 1081 ----------------RYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
LG HP DG I +R R G V + A++P+ P
Sbjct: 788 DKQSKGAGGAGGRTGAAAVKELGEHP-DGGAITVRDGRYGPYVNWGKVNATLPRGKDPQS 846
Query: 1125 VTLEKALEFLSGKDVRRCGRPKGK 1148
VT+E+AL F++ + + G KGK
Sbjct: 847 VTVEEALAFIAER-AAKGGVTKGK 869
>gi|319404287|emb|CBI77880.1| DNA topoisomerase I [Bartonella rochalimae ATCC BAA-1498]
Length = 867
Score = 620 bits (1598), Expect = e-174, Method: Compositional matrix adjust.
Identities = 342/802 (42%), Positives = 486/802 (60%), Gaps = 29/802 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG Y+V+ S+GHVRDL+A+ GSV PD DF+M W++ +A+ L
Sbjct: 3 IVIVESPAKAKTINKYLGSQYKVIASFGHVRDLSAKDGSVLPDKDFAMKWDIDTASAKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A++LILA+DPDREGEAI+WHI+++L+Q+ L++ V RVVF+ IT+ S+
Sbjct: 63 NEIAKAVKEADSLILATDPDREGEAISWHILDVLKQKKVLNDQ-RVKRVVFNAITKKSVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +IC+RE
Sbjct: 122 DAMKNPRDIDISLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICNRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++F ++YW++ L +L F A L F +L +L I S +A I
Sbjct: 182 SEIEQFIKEDYWSITTYL-----KTLQNNIFHARLIEFNHNKLGKLDIQSQEQADQILSM 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ AN++ + + + R P+ TSTLQQ A++KL FSA+ TM++AQKLYEGV++ +G
Sbjct: 237 LEKANYRTLSIEAKPIKRNPSPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVEI-NG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AGLITYMRTDG+ ++ EA R I + +G ++ PE+ PR Y K KNAQEAHEAIR
Sbjct: 296 ETAGLITYMRTDGVQMASEAIDAARKAIIDSFGRNYLPEK-PRFYSTKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES--IVFRS 769
PTD R P + LD D KLY LIW R +A QM A + + V+I + E R+
Sbjct: 355 PTDFTRHPNQVCNFLDSDQAKLYELIWKRAIASQMCSAEIERTTVEIEASQEENHAHLRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S + F GF +AY D + EEN + L + G+ L +VE +H T
Sbjct: 415 TGSVIRFDGFISAYTD--------PKEEENSDEDESTRLPQINVGESLTKEKVESVKHTT 466
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE +L+KKLEELGIGRPSTYASTL L DR Y+ R L P+ +GR+V+AFL
Sbjct: 467 EPPPRYSESALIKKLEELGIGRPSTYASTLSTLCDRGYIITDKRKLIPDVKGRIVTAFLE 526
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
++F+ +Y FTA +E +LD +S G WK +L D+W F++ T Q L I V +L
Sbjct: 527 NFFNRYVEYGFTAALEEKLDLISDGKLSWKDVLRDFWDEFNASITSIQELRIMNVLDVLN 586
Query: 950 KTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
T F + + RSCP+C G L K+ R+GA F+GC+ +P C Y + G D
Sbjct: 587 VTLAPLAFPTREDGSDCRSCPLCTNGQLSLKLGRYGA--FVGCSNYPECKYTRQ--LGSD 642
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKD 1067
EE + + + DEP ++G P + + + L+ G +G Y+QLGE G KRAS+
Sbjct: 643 TEEQS--KAVHNDEPVMLGIDPETGKDISLRHGRFGPYIQLGE---GKEIKRASLPKGWH 697
Query: 1068 VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
+++I + AL LL P +G HP+ G+ I + R G + H ++ + D+ +
Sbjct: 698 IENIDFDKALALLSLPREVGIHPETGKIITAAIGRYGPYLAHDGQYTNLFSTDEVFDIGI 757
Query: 1128 EKALEFLSGKDVRRCGRPKGKP 1149
+A+ L+ K R K P
Sbjct: 758 NRAVTILAEKKESTTNRRKITP 779
>gi|323138636|ref|ZP_08073703.1| DNA topoisomerase I [Methylocystis sp. ATCC 49242]
gi|322396124|gb|EFX98658.1| DNA topoisomerase I [Methylocystis sp. ATCC 49242]
Length = 961
Score = 620 bits (1598), Expect = e-174, Method: Compositional matrix adjust.
Identities = 337/803 (41%), Positives = 483/803 (60%), Gaps = 34/803 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VV+VES KA+ I YLG + V+ YGHVRDL + GSV PD DF+M+WE+ +
Sbjct: 2 NVVIVESAAKAQTINKYLGRDFNVIACYGHVRDLPPKDGSVDPDADFAMIWEMDAKGAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +I A+ GA+ +ILA+DPDREGEAI+WH++++L ++ L + + RVVF+ +T+ +I
Sbjct: 62 VSAIADAVKGADKVILATDPDREGEAISWHLLDILNKKRVLKDK-KIERVVFNAVTKDAI 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A+ REID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 KEAMAHPREIDQALVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F P+EYW++ A L K F A L K++++L IG+ EA+D ++
Sbjct: 181 ELEIEKFVPREYWSLVAHLKTKAGEP-----FTARLVGADGKKISRLDIGAGQEAEDFKK 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+++A F V + + R P+ TSTLQQ+A+ KL F+ TM++AQ+LYEGV +
Sbjct: 236 SLDAATFTVRSVEAKPVKRHPYAPFTTSTLQQEASRKLGFAPAITMRIAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ ++ EA +R +I + YG P PRKY K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVDMAPEAVASVRRVIAKEYGDRFVPG-APRKYTAKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFR 768
RPTD RLP ++ L+ D +LY LIW+RT+A QM+ A + + VDI + R
Sbjct: 354 RPTDAARLPKQIARYLEPDQARLYELIWTRTIASQMESAELERTTVDIDARAGARMLELR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ V F GF Y+ E ++D+ E L ++ G+P +++ QH
Sbjct: 414 ATGQVVRFPGFLELYQ----------EGRDDDQDEDGGRLPAMAQGEPCAREKIDATQHF 463
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP R++E +LVK++EELGIGRPSTYASTL L+DR+YV + + L PE +GR+V AFL
Sbjct: 464 TEPPPRFTEATLVKRMEELGIGRPSTYASTLATLRDRDYVRLDKKRLMPEDKGRLVVAFL 523
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+FS ++ FTA +E +LD VS +WK +L D+W FS+ + L QV L
Sbjct: 524 ESFFSRYVEFDFTASLEEKLDLVSNNEIDWKQVLRDFWQDFSAAVNETKDLRTTQVLDSL 583
Query: 949 EKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
G +F + + R CP C G L KV +FGA FIGC+ +P C Y
Sbjct: 584 NDLLGPHIFPAKEDGSDPRLCPACNSGQLSLKVGKFGA--FIGCSNYPECRYTRTLSPPT 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYL-PKRASVSHI 1065
D ++ + K++G +P + +V L+ G +G YVQ GE G PKRASV
Sbjct: 642 GDAAESARPGV-----KVLGVNPETGAEVTLRDGRFGAYVQEGEQEEGAEKPKRASVPKT 696
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
D +TL+ A+ LL P + HP G+PI++ + R G V+H +T A+V ++ +
Sbjct: 697 IKPDDLTLQQAIGLLSLPREVARHPTTGEPIVVNIGRFGPYVQHGKTYANVGRDDDVLTI 756
Query: 1126 TLEKALEFL----SGKDVRRCGR 1144
+A++ + SG R GR
Sbjct: 757 GANRAIDLIVQKESGAGGSRFGR 779
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 91/208 (43%), Gaps = 55/208 (26%)
Query: 959 SLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL--YGDDDEEDTLQRN 1016
SLP + P GE ++ + RFG Y QH KT G DD+ T+ N
Sbjct: 712 SLPREVARHPTTGE-PIVVNIGRFGP-YV----QH------GKTYANVGRDDDVLTIGAN 759
Query: 1017 TNVD------------------EP-KLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLP 1057
+D EP + +G HP V +KSG +G YV
Sbjct: 760 RAIDLIVQKESGAGGSRFGRASEPGRTLGDHPEGG-GVTVKSGRFGPYVNW--------- 809
Query: 1058 KRASVSHIKDVD--SITLEDALELL---------RYPVNLGNHPKDGQPIMLRLARAGFS 1106
K+ + + KD+D ++TLE ALE++ LG HP DG I +R R G
Sbjct: 810 KKVNATIPKDIDPATLTLEQALEMISAKAAGGGATGGRALGEHP-DGGTITVRAGRFGPY 868
Query: 1107 VRHRRTIASVPKNMKPNDVTLEKALEFL 1134
V + A++PK+M DVTL++A++ +
Sbjct: 869 VNLGKINATLPKSMSAEDVTLDEAIKLI 896
>gi|365858846|ref|ZP_09398752.1| DNA topoisomerase I [Acetobacteraceae bacterium AT-5844]
gi|363713574|gb|EHL97177.1| DNA topoisomerase I [Acetobacteraceae bacterium AT-5844]
Length = 904
Score = 620 bits (1598), Expect = e-174, Method: Compositional matrix adjust.
Identities = 341/800 (42%), Positives = 466/800 (58%), Gaps = 35/800 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG + VL S+GHVRDL A+ GSVRPD+DF+M W +
Sbjct: 4 VVVVESPAKAKTINKYLGSDFTVLASFGHVRDLPAKDGSVRPDEDFAMDWSAEDRGEKQV 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ GA L LA+DPDREGEAI+WH+ EML+Q+ AL + + V R+ F+EIT+ +++
Sbjct: 64 AAIAKAVKGARRLFLATDPDREGEAISWHVQEMLRQKGAL-KGVEVHRITFNEITKRAVQ 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
AL R++D L+ AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 HALAHPRDLDTPLIDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYWTVE +++ F A LT+ K+L Q + A +
Sbjct: 183 AEIEIFKAREYWTVEGKF-----LTVNGAPFTARLTYLDGKKLEQFDLPDEASALRAKAA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + +F V + K+ + R P P+ TSTLQQ+++ KL F A TM+LAQ+LYEGV + G
Sbjct: 238 VEAGSFTVAQLEKKRVRRNPPPPFTTSTLQQESSRKLGFGAQQTMRLAQQLYEGVDI-QG 296
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA IR + + +G + P PR+Y K KNAQEAHEA+R
Sbjct: 297 ETVGLITYMRTDGVQMAREAMFAIRDHVKDEFGPDYIPA-APREYSSKAKNAQEAHEAVR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+RR P ++ L + +LY L+W R +A QMQ A + Q VD+ + R++
Sbjct: 356 PTDVRRTPEKVARFLSPEQRRLYELVWKRAVASQMQSAELDQTSVDLADGPGKTKLRATG 415
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF Y EDVD A ++EE L ++ DP L + QH TQ
Sbjct: 416 SVIAFDGFLKLYREDVDDSA---GDDEEG------RTLPPMRQNDPSKLTAAQADQHFTQ 466
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKK+EELGIGRPSTYAS L+ LQDR+YV + R PE RGR+V+ FL
Sbjct: 467 PPPRYSEASLVKKMEELGIGRPSTYASILQTLQDRDYVKLDKRRFVPEDRGRLVTTFLVS 526
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F D FTA +E +LD++S G W+ ++ +W F++ + L I V L++
Sbjct: 527 FFERYVDPHFTAGLEEQLDDISGGRANWREVMRAFWEEFNAAVGATKDLTITAVIDALDE 586
Query: 951 TFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
G F P K+ R+CP C G L ++ R GA FIGC+ +P C Y
Sbjct: 587 ELGPHFF---PQKEDGGDPRACPSCASGRLGLRLGRNGA--FIGCSNYPECRYTRPLAVP 641
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTG-----YLPKRA 1060
+ E K +G P + + + L+ GPYG YVQLGE T PKR
Sbjct: 642 GAEGEAEAGGLAGGQ--KELGVDPETGQDITLRRGPYGVYVQLGEGGTDAKGKPTKPKRT 699
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
S++ D DS+TLE AL LL P +G HP+ G+ I + R G V+ S+ ++
Sbjct: 700 SLARGMDPDSMTLERALALLSLPRVVGVHPETGEEITAAIGRFGPYVKMGSIFKSLDRDD 759
Query: 1121 KPNDVTLEKALEFLSGKDVR 1140
V + +A+ L+ R
Sbjct: 760 DVLTVGINRAVSLLADAAAR 779
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 12/138 (8%)
Query: 1005 GDDDEEDTLQRNTNV-DEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
G D + TL+R + P+++G HP + E++ G +G YV++G S+
Sbjct: 704 GMDPDSMTLERALALLSLPRVVGVHPETGEEITAAIGRFGPYVKMGS-------IFKSLD 756
Query: 1064 HIKDVDSITLEDALELLRYPVN----LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKN 1119
DV ++ + A+ LL LG HPKDG+P+ ++ R G +H +AS+P+N
Sbjct: 757 RDDDVLTVGINRAVSLLADAAARVRALGPHPKDGEPVEVKKGRFGPFAQHAGFVASLPRN 816
Query: 1120 MKPNDVTLEKALEFLSGK 1137
M ++TL++A+ L+ K
Sbjct: 817 MTMEEITLDQAVALLAEK 834
>gi|315500177|ref|YP_004088980.1| DNA topoisomerase i [Asticcacaulis excentricus CB 48]
gi|315418189|gb|ADU14829.1| DNA topoisomerase I [Asticcacaulis excentricus CB 48]
Length = 873
Score = 620 bits (1598), Expect = e-174, Method: Compositional matrix adjust.
Identities = 358/800 (44%), Positives = 487/800 (60%), Gaps = 37/800 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y VL SYGHVRDL ++ GSV+PD+DF+M WEV + A
Sbjct: 2 NLVIVESPAKAKTINKYLGKDYTVLASYGHVRDLPSKDGSVKPDEDFAMSWEVDAKASKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A +E +ILA+DPDREGEAI+WH++E+L ++ + + V RV F+ IT+AS+
Sbjct: 62 LSDIADAARKSERVILATDPDREGEAISWHVLEVLNKK-KVLKEKVVERVTFNAITKASV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A+ A R+ID LV+AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +I DR
Sbjct: 121 QEAMAAPRQIDMELVEAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALKIIVDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++FK +EYWTV+A + S ++ F A L K+L + + + +A+ +
Sbjct: 181 ELEIEKFKSEEYWTVDAEV------SANSPPFTARLNVLNGKKLAKFDLENAEKAEAARK 234
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I+ + F V ++ R P P+ TSTLQQ+AA KL FSA TM+ AQKLYEGV +
Sbjct: 235 AISLSKFAVESVEQKPGKRTPPPPFTTSTLQQEAARKLGFSAQRTMQTAQKLYEGVDI-G 293
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I A EIR + ER+GS + P E PR Y K KNAQEAHEAI
Sbjct: 294 GETTGLITYMRTDGVFIDPAAIGEIRKAVGERFGSAYVPSE-PRLYKVKAKNAQEAHEAI 352
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT I R P L L+ D +LY LIW RTMA QM+ A V + +D+ N D+SI RS+
Sbjct: 353 RPTSIFRRPETLR--LEGDQARLYELIWKRTMAAQMEAARVEKTTIDLLNHDKSIGLRST 410
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
+ F G+ A YE E ++++ E L L+TG + + +++ QH T+
Sbjct: 411 GQVITFDGYLALYE----------EGKDDETDEDGGRLPQLRTGTLVDVHDIKPAQHFTE 460
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVK++EELGIGRPSTYAS L VL+DR+YV + PE +GR+V+AFL
Sbjct: 461 PPPRYSEASLVKRMEELGIGRPSTYASILSVLRDRDYVRMDKNRFIPEDKGRLVTAFLDQ 520
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+FS Y FTAD+E +LD VSAG WK LL ++W F + + +V L
Sbjct: 521 FFSRYVQYDFTADLEEKLDLVSAGDLNWKALLREFWQDFHAKAGEISEFRVSEVLDRLND 580
Query: 951 TFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
+F P+K R+CP CG G L K SRFGA F+GC+ +P C Y G
Sbjct: 581 ALAPHIF---PDKGDGSNPRACPTCGTGQLSLKTSRFGA--FVGCSNYPECKYTRPV--G 633
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSH 1064
+ + + + E +G P + + V LK G +G YVQLGE + PKR+S+
Sbjct: 634 NPENASEVAAASGDRE---LGRDPETGKVVALKIGRFGPYVQLGEAESKDDKPKRSSLPK 690
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
SI L+ AL+LL P +G+HP+DG+PI L R G + H +T A++P + +
Sbjct: 691 AWPPASIDLDRALKLLSLPRKVGDHPEDGKPITAALGRFGPFIEHEKTYANLPSFDEIFE 750
Query: 1125 VTLEKALEFLSGKDVRRCGR 1144
V L +A+ L+ K G+
Sbjct: 751 VGLNRAVVLLAEKRANAKGK 770
Score = 45.4 bits (106), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ +G HP + + G +G ++ E Y A++ ++ + L A+ LL
Sbjct: 709 PRKVGDHPEDGKPITAALGRFGPFI---EHEKTY----ANLPSFDEIFEVGLNRAVVLLA 761
Query: 1082 YP--------------VNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
LG HP+ G I + R G V+ + A++PK+ P DVTL
Sbjct: 762 EKRANAKGKASTVATLKELGAHPESGDAIQVMAGRYGPYVKCGKVNATIPKDTAPEDVTL 821
Query: 1128 EKALEFLSGK 1137
E+AL + K
Sbjct: 822 EQALALIEAK 831
>gi|384261548|ref|YP_005416734.1| DNA topoisomerase [Rhodospirillum photometricum DSM 122]
gi|378402648|emb|CCG07764.1| DNA topoisomerase [Rhodospirillum photometricum DSM 122]
Length = 914
Score = 619 bits (1597), Expect = e-174, Method: Compositional matrix adjust.
Identities = 352/795 (44%), Positives = 471/795 (59%), Gaps = 31/795 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y+VL SYGHVRDL + GSVRPD+ F+M WEV + HL
Sbjct: 3 VVVVESPAKAKTINKYLGKNYKVLASYGHVRDLPPKDGSVRPDEGFAMDWEVDERSERHL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+ I AL A+ L+LA+DPDREGEAI+WH+ E+L+ + AL +V R+ F+ IT ++++
Sbjct: 63 REIIQALEHADALLLATDPDREGEAISWHVREVLESRKALVGK-SVQRITFNAITRSAVE 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
AL AR++D LV+AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+C+RE
Sbjct: 122 EALNNARDLDHPLVEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLVCERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F +EYW+VEA+L + F A LTH +L++ + T A
Sbjct: 182 QEIERFVTREYWSVEALLATEAGQP-----FKARLTHLNGHKLDKFDLPDKTAADAALAA 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ +A V ++ R P+ TSTLQQ+A+ KL FSA TM +AQKLYEGV L G
Sbjct: 237 VEAARLSVATVERKQAKRHPAAPFTTSTLQQEASRKLYFSARQTMTVAQKLYEGVDL-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ I+ EA R+LI + +G + P++ PR Y K KNAQEAHEAIR
Sbjct: 296 ETVGLITYMRTDGVSIAPEAVTATRALIQDEFGRDYLPDQ-PRVYKTKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ R PA ++ L ++ KLY LIW RT+A QM A + Q+ VDI + ++V R++
Sbjct: 355 PTDVSRSPAEVAPFLTQEQRKLYELIWKRTVASQMASAILDQVVVDITDPARTVVLRATG 414
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S V F GF Y ED D R + +D E +L L G+ L QH TQ
Sbjct: 415 SVVRFDGFLKVYREDHDD---RPDTGDSSDDDEN-RLLPPLAEGEALTRESARADQHFTQ 470
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E SLVK++EELGIGRPSTYAS L VLQDR YV + +R PE RGR+V+ FL +
Sbjct: 471 PPPRYTEASLVKRMEELGIGRPSTYASILSVLQDREYVRLDNRRFVPEDRGRLVTTFLEN 530
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+FS YSFTAD+E +LD +S G WK +L +W F + +L + +V L+
Sbjct: 531 FFSRYVQYSFTADLENQLDEISDGALGWKTVLEAFWRDFKAAIDDTATLRVSEVLDALDA 590
Query: 951 TFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
G LF P D R CPVC G L ++ +FGA F+GC+ +P C + +
Sbjct: 591 ELGPHLFP--PTADGRDPRVCPVCNSGKLGLRIGKFGA--FVGCSGYPECKFTRPXVAKG 646
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYL------PKRA 1060
D E V K++G P E+V L+ GPYG YVQ GE P R
Sbjct: 647 DGEGQATGLEDGV---KVLGLAP-DGEEVTLRKGPYGPYVQKGEAAKAEKGKKAVKPPRV 702
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
S+ + + I L+ AL+LL P ++G HP+ I + R G ++H SVPK+
Sbjct: 703 SIPNTMEPAGIDLDIALKLLALPRDIGEHPETHAMITAGIGRFGPYLKHGDIYKSVPKDE 762
Query: 1121 KPNDVTLEKALEFLS 1135
+ L +A+ L+
Sbjct: 763 DILSIGLNRAVVLLA 777
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
P+ IG HP + + G +G Y++ G+ SV +D+ SI L A+ LL
Sbjct: 725 PRDIGEHPETHAMITAGIGRFGPYLKHGD-------IYKSVPKDEDILSIGLNRAVVLLA 777
Query: 1081 --------RYPV-NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKAL 1131
R P +LG+HP+D +P+ + R G V+H T A++PK P +TLE+AL
Sbjct: 778 ESARGGRARQPAKSLGDHPEDAKPVTIHDGRFGPYVQHGATRATLPKGEDPAGLTLERAL 837
Query: 1132 EFLSGKDVRRCGRP 1145
E L + + G P
Sbjct: 838 EVLKARLAKDAGAP 851
>gi|379714031|ref|YP_005302369.1| DNA topoisomerase I [Rickettsia massiliae str. AZT80]
gi|376334677|gb|AFB31909.1| DNA topoisomerase I [Rickettsia massiliae str. AZT80]
Length = 776
Score = 619 bits (1597), Expect = e-174, Method: Compositional matrix adjust.
Identities = 328/784 (41%), Positives = 480/784 (61%), Gaps = 23/784 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGESISWHVAEVIKEKNQVKSDDFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTHVNDQKLEKFSIINEKNAKDLIEK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V K K+ R+ P+ITS+LQQDAA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQKFHVDKIEKKQQKRQPQPPFITSSLQQDAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKSYGDKYLP-TSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L L++D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLEKDYYKLYELIWKRTIACQMENVIMNLVVANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK +PL EV QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESVDDEAEEENKMLPPLKEQEPLKTKEVIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F++ +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 526 FTKYVEYDFTAGLENELDEIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + C C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKVCASCNTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ + +E K++G E + LK GPYG Y+QLGE PKR+ V + +
Sbjct: 642 NEGEPAAMPNENKVLGTDKDGVE-IYLKKGPYGPYIQLGEQEGKVKPKRSPVPASLNQND 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITL+ AL+LL P+ +G H + IM+ + G +++ +V K +++L+ A
Sbjct: 701 ITLDIALKLLSLPLKIGIHKDSDEEIMIGYGKFGPYIKYMGKFIAVQKKYDFLNLSLDDA 760
Query: 1131 LEFL 1134
++ +
Sbjct: 761 MKLI 764
>gi|46200755|ref|ZP_00056434.2| COG0550: Topoisomerase IA [Magnetospirillum magnetotacticum MS-1]
Length = 895
Score = 619 bits (1597), Expect = e-174, Method: Compositional matrix adjust.
Identities = 352/806 (43%), Positives = 482/806 (59%), Gaps = 48/806 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG + VL SYGH+RDL + GSVRPD+ F+M WE + + +
Sbjct: 3 VVVVESPAKAKTINKYLGSDFHVLASYGHIRDLPPKDGSVRPDEGFAMDWETDAKSERQI 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K I A+ GA+ L LA+DPDREGEAI+WH+ ++L+ + AL + + V RVVF+EIT++++
Sbjct: 63 KEIVAAVKGADKLFLATDPDREGEAISWHVRQVLEARKAL-KGVEVKRVVFNEITKSAVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ REI LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 122 DAMRNPREIHQELVDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+P+EYWT+ A + L A LTH K+L++ + S A+D E+K
Sbjct: 182 SEIESFRPREYWTIAADFLTPKGALLS-----AGLTHLGGKKLDKFDLSSEALARDAEKK 236
Query: 592 INSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
SA + V + +R ++NP P+ TSTLQQ+A+ KL F+A TM+LAQ+LYEGV +
Sbjct: 237 AASARYSV-ASVERKRTKRNPYPPFTTSTLQQEASRKLYFAAARTMQLAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA R++I E +G + P+ PR Y K KNAQEAHEAI
Sbjct: 295 GETVGLITYMRTDGVQMAAEAIAGARAVIAEDFGKAYVPD-APRLYKTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ R P ++ LD+D L+LY LIW RT+A QM A + Q+ VDI IVFR++
Sbjct: 354 RPTDLARRPEDVARYLDKDQLRLYELIWKRTLASQMAAAELDQVGVDIAGDQHGIVFRAT 413
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S V F GF Y ++ +++D +A +L + D + + +QH TQ
Sbjct: 414 GSVVVFDGFMKVYR---------EDKDDSDDEDAEKLLPDVNEKDSMDRKAMRTEQHFTQ 464
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP R+SE SLVK++EELGIGRPSTYAS L VLQ+RNYV + R PE RGR+V+AFL
Sbjct: 465 PPPRFSEASLVKRMEELGIGRPSTYASILSVLQERNYVRLDQRRFIPEDRGRLVTAFLES 524
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F +Y+FTAD+E +LD++S G EW+ +L +W FS + L + QV L++
Sbjct: 525 FFGRYVEYNFTADLENQLDDISGGRDEWRKVLDRFWRDFSGAVDETKDLRVAQVLDALDE 584
Query: 951 TFGDSLFA--SLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
G F + RSCP C G L K+ +FGA FIGC+ +P C +
Sbjct: 585 LLGPHFFPDNGTGHDPRSCPTCNAGRLSLKLGKFGA--FIGCSAYPECRFTRPL------ 636
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT--------------- 1053
+ PK +G+ PAS V L+ GPYG YVQLG++ T
Sbjct: 637 TTGGEGEEEVREGPKELGNDPASGLPVSLRKGPYGHYVQLGDESTMKAEPAPVPEKGKKA 696
Query: 1054 ----GYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
PKR S+ + +TL+ A LL P +G HP+ G+ I + R G V H
Sbjct: 697 KAAKTPKPKRVSLYKGLEPADVTLDIACRLLELPRLVGTHPETGKSISAGVGRFGPYVVH 756
Query: 1110 RRTIASVPKNMKPNDVTLEKALEFLS 1135
T S+ K+ + + +A+E LS
Sbjct: 757 DGTYKSLAKDDDVLVIGMNRAMELLS 782
Score = 40.8 bits (94), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 18/122 (14%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+L+G HP + + + G +G YV D T S++ DV I + A+ELL
Sbjct: 730 PRLVGTHPETGKSISAGVGRFGPYVV--HDGT-----YKSLAKDDDVLVIGMNRAMELLS 782
Query: 1082 Y--------PV-NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALE 1132
P+ LG H +G+P+ L R G V A++PK+ + VTLE AL
Sbjct: 783 QAKGRGGSGPLKTLGEH--EGKPVTLHEGRYGPYVSRDGVHATLPKDSSVDTVTLEAALV 840
Query: 1133 FL 1134
+
Sbjct: 841 LI 842
>gi|384218294|ref|YP_005609460.1| DNA topoisomerase I [Bradyrhizobium japonicum USDA 6]
gi|354957193|dbj|BAL09872.1| DNA topoisomerase I [Bradyrhizobium japonicum USDA 6]
Length = 915
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 344/811 (42%), Positives = 487/811 (60%), Gaps = 46/811 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL S+GHVRDL A++GSV PD +F M+WEV A
Sbjct: 2 NIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDANFKMIWEVDPKAAGR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I +L GA+ LILA+DPDREGEAI+WH++E+L+++ AL + + RVVF+ IT+ ++
Sbjct: 62 LNDIAKSLKGADRLILATDPDREGEAISWHVLEVLKEKRALKDQ-KIERVVFNAITKQAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 TDAMKNPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F P+EYW++ A L + F A L K++ +L +GS EA+D ++
Sbjct: 181 ELEIEKFVPREYWSLIATLLTPRGDA-----FEARLVGADGKKIQRLDVGSGAEAEDFKK 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +A + V + R P+ TSTLQQ+A+ K F+ +TM++AQ+LYEG+ +
Sbjct: 236 ALEAAAYAVTAVDAKPARRNPQAPFTTSTLQQEASRKYGFAPAHTMRIAQRLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I A + R +I E YG+ + PE PR+Y K KNAQEAHEAI
Sbjct: 295 GETTGLITYMRTDGVQIDPSAITQARKVIGEDYGNAYVPE-APRQYQAKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFR 768
RPTD+ R P +S LD D +LY LIW RT+A QM+ A + + VDI ++ R
Sbjct: 354 RPTDMSRRPDSMSRKLDADQARLYELIWKRTIASQMESAELERTTVDITAKAGSRTLELR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ V+F GF A Y+ E +++ E L ++ D L + + QH
Sbjct: 414 ATGQVVKFDGFLALYQ----------EGRDDEEDEDSRRLPAMSPNDALKRQSLAVTQHF 463
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP R+SE SLVK++EELGIGRPSTYAS L+VL+DR YV ++ + L+ E +GR+V AFL
Sbjct: 464 TEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVKLEKKRLHGEDKGRVVVAFL 523
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F+ +Y FTA++E +LD +S W+ +L D+W+ F + L + QV +L
Sbjct: 524 ESFFNRYVEYDFTANLEEQLDRISNNEISWQQVLKDFWTGFIGAVDEIKDLRVAQVLDVL 583
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
+ G ++ P D R CP CG G L K +FGA F+GC+ +P C Y +
Sbjct: 584 DDMLGQHIYP--PRADGGDIRQCPSCGNGRLNLKAGKFGA--FVGCSNYPECRYTRQLAA 639
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRAS 1061
D E T R+ +G P + V +K+G +G Y+QLGE + G PKRA
Sbjct: 640 ---DSETTADRS--------LGQDPDTGRDVWVKAGRFGPYIQLGEPKDYEEGEKPKRAG 688
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + LE AL+LL P +G HP+ GQPI L R G V+H +T AS+ +
Sbjct: 689 IPKGTSPGDVELELALKLLSLPREIGKHPETGQPITAGLGRFGPFVKHEKTYASLESGDE 748
Query: 1122 PNDVTLEKALEFLSGKDV----RRCGRPKGK 1148
D+ L +A+ ++ K RR G GK
Sbjct: 749 VFDIGLNRAVTLIAEKVAKGPSRRFGADPGK 779
>gi|254419327|ref|ZP_05033051.1| DNA topoisomerase I [Brevundimonas sp. BAL3]
gi|196185504|gb|EDX80480.1| DNA topoisomerase I [Brevundimonas sp. BAL3]
Length = 875
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 358/803 (44%), Positives = 480/803 (59%), Gaps = 43/803 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL SYGHVRDL ++ GSV PDDDFSM WE +
Sbjct: 2 NLVIVESPAKAKTINKYLGSGYEVLASYGHVRDLPSKDGSVLPDDDFSMHWEADAKGAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A A+ +ILA+DPDREGEAI+WH++E+L ++ AL ++ V RV F+ IT++++
Sbjct: 62 LSEIAEAAKRADRVILATDPDREGEAISWHVLEVLNKKKAL-KDTHVERVTFNAITKSAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV+AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL ++ DR
Sbjct: 121 LEAMANPRQIDMELVEAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIVVDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
EMEI++FK QEYW++EA L+ D+ F A L KR+ +L I A
Sbjct: 181 EMEIEKFKAQEYWSIEADLNA------DSPPFTARLVKHAGKRVQRLDIKDEATAAAARA 234
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I++ +F I + ++ VR+NP P + TSTLQQ+A+ KL FSA TM+ AQKLYEGV
Sbjct: 235 AIDAGDF-TINSVEKKPVRRNPAPPFTTSTLQQEASRKLGFSAQRTMQAAQKLYEGVD-- 291
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTDG+ + E + R +I + +G P+E PR Y K KNAQEAHEA
Sbjct: 292 --ETGGLITYMRTDGVQTTPEGIAQAREVIAKEFGPAFVPQE-PRYYKTKAKNAQEAHEA 348
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT+I R P L L+ D +LY LIW R +A QM+ A + + V+I +D R+
Sbjct: 349 IRPTNIARHPDSLR--LESDLQRLYELIWKRMVASQMEAARMDRTTVEIETSDGLTGLRA 406
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ V F GF A YE+ G ++ E D + + L +LK G + + QH T
Sbjct: 407 TGQVVTFDGFLAVYEE---GRDEKQKGAEEDEGDDTSRLPALKEGAKAKVDAIRTDQHFT 463
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE +LVKKLEELGIGRPSTYASTL L+DR YV V YPE +GR+V+AFL
Sbjct: 464 EPPPRYSEATLVKKLEELGIGRPSTYASTLSTLRDREYVRVDKNRFYPEDKGRLVTAFLE 523
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F + +Y FTA +ET LD VSAG +WK LL ++WS F + A L + L
Sbjct: 524 QFFRKWVEYDFTAALETRLDEVSAGQLDWKVLLREFWSDFHAATQAAGELRTTAILDALN 583
Query: 950 KTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYI--AKT 1002
++ G +F P K+ R CP+C +G L K SRFGA FIGC ++P C Y +
Sbjct: 584 ESLGAHIF---PAKEDGSDPRECPLCHQGQLSLKTSRFGA--FIGCERYPDCKYTRPVAS 638
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
+D ++ R +G P + + V LK G +G YV++ G PKR+S+
Sbjct: 639 PSAEDGSAESGDRE--------LGMDPETGQPVQLKIGRFGPYVEITPPE-GDKPKRSSL 689
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
S+TL+ AL LL P +G HP+DG+ I L R G V H T A+V +
Sbjct: 690 PKGWSPASLTLDQALRLLALPREVGVHPEDGKMITAGLGRYGPFVLHAGTYANVSDIDEV 749
Query: 1123 NDVTLEKALEFLSGKDVRRCGRP 1145
+V L +A+ L+ K R GRP
Sbjct: 750 FEVGLNRAVALLAEK---RAGRP 769
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 21/127 (16%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
P+ +G HP + + G YG +V + A+VS I +V + L A+ LL
Sbjct: 710 PREVGVHPEDGKMITAGLGRYGPFVL-------HAGTYANVSDIDEVFEVGLNRAVALLA 762
Query: 1081 ------------RYPV-NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
P+ +LG HP+ G+PI + R G V+ + A++PK + P D+T+
Sbjct: 763 EKRAGRPGRGAATAPLKDLGAHPETGEPIHVMAGRFGPYVKSGKINATLPKGVAPEDLTV 822
Query: 1128 EKALEFL 1134
E AL L
Sbjct: 823 EDALPLL 829
>gi|51473522|ref|YP_067279.1| DNA topoisomerase I [Rickettsia typhi str. Wilmington]
gi|383752296|ref|YP_005427396.1| DNA topoisomerase I [Rickettsia typhi str. TH1527]
gi|383843133|ref|YP_005423636.1| DNA topoisomerase I [Rickettsia typhi str. B9991CWPP]
gi|81390168|sp|Q68X45.1|TOP1_RICTY RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase I;
AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName: Full=Untwisting
enzyme
gi|51459834|gb|AAU03797.1| DNA topoisomerase I [Rickettsia typhi str. Wilmington]
gi|380758939|gb|AFE54174.1| DNA topoisomerase I [Rickettsia typhi str. TH1527]
gi|380759780|gb|AFE55014.1| DNA topoisomerase I [Rickettsia typhi str. B9991CWPP]
Length = 779
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 333/784 (42%), Positives = 483/784 (61%), Gaps = 23/784 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD +F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDKNFAMEYDISDKASKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AE + LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKYARKAEAVYLATDPDREGESISWHVAEVIKEKNKVESDDFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LICDRE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICDRE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + EAKD+ +K
Sbjct: 183 DEIERFKAEEYWDISLKMQNSNNE-----LFTAKLTHVNDQKLKKFSIINEKEAKDLTRK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ F V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKLQKFYVEKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG+ + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKNYGNKYLP-INPRIYQSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L L++D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDNLKQKLEKDYYKLYELIWQRTIACQMENVIMDLVIANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK + + EV +H T+P
Sbjct: 416 SIIAFDGFYKV----------YRESLDDEDEEDNKMLPPLKAQEHIKTKEVIPNKHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YVT++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVTLEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F++ I ++ L+K
Sbjct: 526 FKKYVEYDFTAGLENELDEIAAGKLEWKTSLNNFWSGFNNNIESVNEQKITEIINYLQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKVCPSCKTGQLSLKLGKFGA--FLACSNYPECTFKKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
D +T +++ K++G E + LK+GPYG Y+QLGE PKR V
Sbjct: 642 DEGNLSTILNDNKILGTDKDGVE-IYLKTGPYGPYIQLGEQCGKVKPKRTPVPTNLKQSE 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITLE AL+LL P+ +G H G+ I++ ++ G +++ SVPK ++ L+ A
Sbjct: 701 ITLEVALKLLSLPLKIGIHKDSGEEIIIGYSKFGPYIKYMCKFISVPKKYDFLNLNLDDA 760
Query: 1131 LEFL 1134
++ +
Sbjct: 761 IKLI 764
>gi|254294346|ref|YP_003060369.1| DNA topoisomerase I [Hirschia baltica ATCC 49814]
gi|254042877|gb|ACT59672.1| DNA topoisomerase I [Hirschia baltica ATCC 49814]
Length = 865
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 338/801 (42%), Positives = 475/801 (59%), Gaps = 48/801 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGH+RDL ++ GSV PD DF+M WE S + +
Sbjct: 3 VVVVESPAKAKTINNYLGKDYIVLASYGHIRDLPSKDGSVDPDADFAMKWEGDSKSNKRI 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K I AL GA+ LILA+DPDREGEAI+WH++++L ++ L ++ + RVVF+ IT+ SI
Sbjct: 63 KDIADALKGADGLILATDPDREGEAISWHVLDVLSKKRGLMKDKKIERVVFNAITKKSIL 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+Q R +D LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 123 EAMQNPRSLDQELVDAYLARRALDYLVGFNLSPVLWRKLPGSRSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
+EI+ FKP+EYWT++ ++D S+ F A L + K+ + S + EA D +
Sbjct: 183 VEIEAFKPEEYWTIKGLMD-----SVSKTEFEARLYELEGKKTQKFSF-PNKEAADKALE 236
Query: 592 INSANFQVIKNSKRSMVRKN-PTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +++ + V+ N P P+ TSTLQQ+A+ KL F+A+ TM AQKLYE
Sbjct: 237 VVRVGGYTVQSVEAKPVKSNPPPPFTTSTLQQEASRKLGFNASRTMGAAQKLYE------ 290
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
AGLITYMRTDG+ ++ EA R I ERYG+ + P PR Y K KNAQEAHEA+
Sbjct: 291 ---AGLITYMRTDGVEMAQEAIHAARDAIKERYGAPYVP-SSPRIYTSKAKNAQEAHEAV 346
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD + P+ + L+ D +LY L+W R +A QM A + + D+ + D + R++
Sbjct: 347 RPTDFLKHPSEVR--LEADLQRLYDLVWKRAVASQMATAQLERTTADLKSKDGQAILRAT 404
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
V+F GF Y++ G +E+ R L ++ GD + L + + Q TQ
Sbjct: 405 GQVVKFDGFLTLYQE---GKDDANGDEDAKR------LPAMSVGDVIDLKKADANQSFTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP R++E SLVKK+EELGIGRPSTYASTL L+DR+YV + P +GR+V+ FL +
Sbjct: 456 PPPRFTEASLVKKMEELGIGRPSTYASTLATLRDRDYVEMDKNRFVPADKGRLVTIFLEN 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF++ Y FTA++E +LD VS G EWK L ++W +FS L + V +L
Sbjct: 516 YFNQYVQYDFTAELEEKLDLVSDGKLEWKVFLAEFWKQFSLKIAEVMELRVTNVLDLLND 575
Query: 951 TFGDSLFASLPNKD-----------RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYI 999
G +F P D R CP+C EG L K+ R GA FIGC+ +P C +
Sbjct: 576 VLGPKIFP--PKLDEKTGEPTGEDPRLCPLCKEGQLSMKLGRNGA--FIGCSNYPECKHT 631
Query: 1000 AKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKR 1059
D ED + + KL+G P + + + L++G +G YVQLGE PKR
Sbjct: 632 RPFTTDGSDAEDAVSPDG-----KLLGQDPETGKDISLRTGRFGPYVQLGEGIGKEKPKR 686
Query: 1060 ASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKN 1119
S+ D +TL A++L+ P +G HP+DG+ + R G V+H++T A++P
Sbjct: 687 GSIPKGWKADELTLAQAIQLINLPREIGPHPEDGEMMYANFGRYGPYVQHQKTYANLPDP 746
Query: 1120 MKPNDVTLEKALEFLSGKDVR 1140
M +V L +A+ ++ K+ +
Sbjct: 747 MDVFEVGLNRAVALIAEKNAK 767
>gi|383483228|ref|YP_005392142.1| DNA topoisomerase I [Rickettsia montanensis str. OSU 85-930]
gi|378935582|gb|AFC74083.1| DNA topoisomerase I [Rickettsia montanensis str. OSU 85-930]
Length = 776
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 329/784 (41%), Positives = 479/784 (61%), Gaps = 23/784 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGESISWHVAEVIKEKNQVKSDDFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
I+ FK +EYW + + + F A LTH ++L Q SI + AKD+ +K
Sbjct: 183 DAIERFKSEEYWDISLKMQNSNNE-----LFTAKLTHVNDQKLEQFSIINEKNAKDLTEK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQKFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKSYGDKYLP-ISPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L L++D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLEKDYYKLYELIWKRTIACQMENVIMDLVVANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ ++D E +L LK + L EV QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESVDDDAEEENKMLPPLKEQESLKTKEVIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F++ +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 526 FTKYVEYDFTAGLENELDEIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKVCPSCNTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ + T +E K++G + LK GPYG Y+QLGE PKR+ V + +
Sbjct: 642 NEGEPATMPNENKVLGTDKDGV-GIYLKKGPYGPYIQLGEQEGKVKPKRSPVPASLNQND 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITL+ AL+LL P+ +G H + IM+ + G +++ SV K +++L+ A
Sbjct: 701 ITLDIALKLLSLPLKIGIHKDSDEEIMIGYGKFGPYIKYMGKFISVQKKYDFLNLSLDDA 760
Query: 1131 LEFL 1134
++ +
Sbjct: 761 MKLI 764
>gi|319405730|emb|CBI79353.1| DNA topoisomerase I [Bartonella sp. AR 15-3]
Length = 864
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 340/790 (43%), Positives = 481/790 (60%), Gaps = 29/790 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG Y+V+ S+GHVRDL+A+ GSV PD DF+M W++ +A+ L
Sbjct: 3 IVIVESPAKAKTINKYLGSQYKVIASFGHVRDLSAKDGSVLPDKDFAMKWDINTASAKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A+ LILA+DPDREGEAI+WHI+++L+Q+ L++ + V RVVF+ IT+ S+
Sbjct: 63 NEIAKAVKDADTLILATDPDREGEAISWHILDVLKQKKVLNDQL-VKRVVFNAITKKSVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +IC+RE
Sbjct: 122 DAMKNPRDIDISLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIICNRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++F ++YW++ L +L F A L F K+L +L I S +A I
Sbjct: 182 SEIEQFIKEDYWSIRTYL-----KTLQNNIFHARLIEFNHKKLGKLDIQSQEQADQILFM 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ AN++ + + + R P+ TSTLQQ A++KL FSA+ TM++AQKLYEGV++ +G
Sbjct: 237 LEKANYRTLSIEAKPIKRNPSPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVEI-NG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AGLITYMRTDG+ + EA R I + +G H+ PE+ PR Y K KNAQEAHEAIR
Sbjct: 296 ETAGLITYMRTDGVQMVSEAIDAARKAIIDSFGKHYVPEK-PRFYSTKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVFRS 769
PTD R P + +LD D KLY LIW R +A QM A + + V+I + R+
Sbjct: 355 PTDFTRHPNQVRNVLDSDQAKLYELIWKRAIASQMCSAEIERTTVEIEALQKENHAHLRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S + F GF +AY D + EEN + L + G+ L +VE QH T
Sbjct: 415 IGSVICFDGFISAYTD--------PKEEENSEEDETGRLPQINVGESLIKEKVESIQHTT 466
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE +L+KKLEELGIGRPSTYAS L L DR Y+ R L P+ +GR+V+AFL
Sbjct: 467 EPPPRYSESALIKKLEELGIGRPSTYASILSTLCDRGYIITDKRKLIPDVKGRIVTAFLE 526
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
++F+ + FTA +E +LD +S G WK +L D+W F++ T Q L I V +L
Sbjct: 527 NFFNRYVECGFTAALEEKLDLISDGKLSWKDVLRDFWDEFNASVTNIQELRIMNVLDVLN 586
Query: 950 KTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
F + + RSCP+C G L K+ R+GA FIGC+ +P C Y + G D
Sbjct: 587 IALASFAFPTREDGSDCRSCPLCTNGQLSLKLGRYGA--FIGCSNYPECKYTCQ--LGSD 642
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKD 1067
EE + + + DEP ++G P + + + L++G +G Y+QLGE G KRAS+
Sbjct: 643 TEEQS--KAMHNDEPVMLGIDPETGKDISLRNGRFGPYIQLGE---GKEIKRASLPKGWQ 697
Query: 1068 VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
+++I + AL LL P +G HP+ G+ I + R G + H ++ K + D+ +
Sbjct: 698 IENIDFDKALALLSLPREVGTHPETGKIITAAIGRYGPYLAHDGQYTNLFKTDEVFDIGI 757
Query: 1128 EKALEFLSGK 1137
+A+ L+ K
Sbjct: 758 NRAVTILAEK 767
>gi|90417727|ref|ZP_01225639.1| DNA topoisomerase I [Aurantimonas manganoxydans SI85-9A1]
gi|90337399|gb|EAS51050.1| DNA topoisomerase I [Aurantimonas manganoxydans SI85-9A1]
Length = 923
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 346/809 (42%), Positives = 480/809 (59%), Gaps = 40/809 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VV+VES KAK I YLG Y+V+ SYGHVRDL A+ GSVRPD+DF+M WEV + +
Sbjct: 3 VVIVESPAKAKTINKYLGGNYQVIASYGHVRDLPAKDGSVRPDEDFAMSWEVGKPSVKRI 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A+ L+LA+DPDREGEAI+WH++E+L+Q+ + V+RVVF+ IT+ ++
Sbjct: 63 SEIAQAVKKADGLVLATDPDREGEAISWHVLEVLRQKKVIGTK-PVSRVVFNAITKKAVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDRE
Sbjct: 122 DAMANPRAIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + A+L F A LT F +L ++SIG+ +A+ I
Sbjct: 182 AEIERFKKEEYWQIAAMLATPRGDD-----FRARLTGFGGDKLQKMSIGNGDKAETIRAM 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
++ A ++V + R P+ TSTLQQ A+ KL FSA+ TM++AQ+LYEGV + G
Sbjct: 237 LDGATYRVDSVQAKPTKRNPGPPFTTSTLQQAASAKLGFSASRTMQVAQRLYEGVDV-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA + R I +G + PE+ PR Y K KNAQEAHEAIR
Sbjct: 296 ETVGLITYMRTDGVQMAPEAIADARKSIGASFGERYVPEK-PRYYSSKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFRS 769
PT+ R P + LD D +LY LIW R +A QM A + + +I N E+ R+
Sbjct: 355 PTEFGRAPKDVERYLDRDQARLYDLIWKRCIASQMASAEIERTTAEIVATNGGETATLRA 414
Query: 770 SCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ ++F GF AY E D +E++DR A L + + L +E QH
Sbjct: 415 TGQVIKFDGFIGAYVEHRDDSKASDPGDEDDDR----ARLPEILADEDLAKRAIEASQHF 470
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KK+EELGIGRPSTYASTL+ L+DR YV ++R L P+ +GR+V+AFL
Sbjct: 471 TEPPPRYSEASLIKKMEELGIGRPSTYASTLQTLEDRGYVVQEARKLLPDAKGRLVTAFL 530
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F +Y FTA +E +LD +SAG WK +L ++W FS+ + L + V L
Sbjct: 531 HNFFERYVEYDFTAALEEKLDLISAGQLAWKDVLREFWQNFSAQVDGTKELRVTNVLDAL 590
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY---IAK 1001
G +F P +D R+CP CG G L K+ +FGA F+GC+ +P C Y +
Sbjct: 591 NVELGPLVFP--PKEDGTEPRACPRCGNGQLSLKLGKFGA--FVGCSNYPDCGYTRQLGT 646
Query: 1002 TLYGDDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRA 1060
+ GD +DE P +G P + E V L++G +G YVQ GE G KR+
Sbjct: 647 NMSGD---------GAAMDEGPSDLGVDPETGEPVTLRTGRFGPYVQRGE---GKEAKRS 694
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
S+ + L+ AL LL P +G HP+ G+PI+ L R G + H A++
Sbjct: 695 SLPKGWQASEMDLDKALRLLSLPREVGLHPESGKPILAGLGRYGPFLNHDGMYANLETIE 754
Query: 1121 KPNDVTLEKALEFLSGKDVRRCGRPKGKP 1149
+V L +A+ ++ K + GR +G P
Sbjct: 755 DVFEVGLNRAVTVIAEKK-EKGGRGRGTP 782
>gi|341583677|ref|YP_004764168.1| DNA topoisomerase I [Rickettsia heilongjiangensis 054]
gi|340807903|gb|AEK74491.1| DNA topoisomerase I [Rickettsia heilongjiangensis 054]
Length = 776
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 327/795 (41%), Positives = 482/795 (60%), Gaps = 23/795 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGE+I+WH+ E++++++ + + R+ F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGESISWHVAEVIKEKNQVKSDDFFKRIAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDNNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTHVNDQKLEKFSIINEKNAKDLTEK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V K K+ R+ P+IT++LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQKFHVDKIEKKQQKRQPQPPFITASLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKSYGDKYLP-TSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L L++D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLEKDYYKLYELIWKRTIACQMENVIMDLVVANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ ++ E +L LK +PL +V QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESMDDKAEEENKMLPPLKEQEPLKTKKVIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 526 FKKYVEYDFTAGLENELDAIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKVCPSCNTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ + +E K++G E + LK GPYG Y+QLGE PKR+ V + +
Sbjct: 642 NEGEPAAMPNENKVLGTDKDGVE-IYLKKGPYGPYIQLGEQEGKVKPKRSPVPASLNQND 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITL+ AL+LL P+ +G H + IM+ + G +++ SV K +++L+ A
Sbjct: 701 ITLDIALKLLSLPLKIGIHKDSDEEIMIGYGKFGPYIKYMGKFISVQKKYDFLNLSLDDA 760
Query: 1131 LEFLSGKDVRRCGRP 1145
++ + + +P
Sbjct: 761 MKLIEENKAKLEKKP 775
>gi|227821655|ref|YP_002825625.1| DNA topoisomerase I [Sinorhizobium fredii NGR234]
gi|227340654|gb|ACP24872.1| DNA topoisomerase I [Sinorhizobium fredii NGR234]
Length = 890
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 338/795 (42%), Positives = 483/795 (60%), Gaps = 35/795 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES +KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF M WEV A+
Sbjct: 2 NVVVVESPSKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVRPDEDFEMSWEVDGASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ LILA+DPDREGEAI+WH++++L+++ + + V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSSDGLILATDPDREGEAISWHVLDLLKKKKVIGDK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID +LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMADPRDIDISLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL ++G+ EA ++
Sbjct: 181 EAEIERFVTEEYWNISALLKTPRGDE-----FEARLVSADGKRLQPKAVGNGEEANRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++ A++ V+++ + V++NP P+ TSTLQQ A++KL FSA+ TM++AQKLYEGV +
Sbjct: 236 LLDGASY-VVESVEAKPVKRNPGPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVDV- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R I ++G+ + PE+ PR Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARRAIGSQFGTRYLPEK-PRFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVF 767
IRPTD R P + LD D LKLY LIW R +A QM A + + +I N +
Sbjct: 353 IRPTDFNRTPDEVRRFLDGDMLKLYDLIWKRGIASQMASAEIERTTAEIAADNGGKKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S + F GF AAY D+ ++ E+ D + L + + L ++ QH
Sbjct: 413 RATGSVIRFDGFIAAYTDMK------EDGEQADDGDESGRLPEINARENLAKQKINATQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE +L+KK+EELGIGRPSTYA+T+ L DR+YV + R L P+ +GR+V+AF
Sbjct: 467 FTEPPPRYSEATLIKKMEELGIGRPSTYAATISTLVDRDYVEIDKRKLMPQAKGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F+ +Y FTA +E +LD +SAG WK +L ++W F S + L + V
Sbjct: 527 LESFFTRYVEYDFTASLEEKLDQISAGELNWKDVLREFWKDFFSQIEDTKELRVTNVLDA 586
Query: 948 LEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
L + +F P ++ R+C VCG G L K+ ++GA F+GC+ +P CNY +
Sbjct: 587 LNEELAPLVF---PKREDGGDPRTCQVCGTGKLSLKLGKYGA--FVGCSNYPECNYTRQL 641
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
+ + + N EP+ +G P + E++ L+SG +G YVQ G+ G KRAS+
Sbjct: 642 SSDSNGDAEAAVSN----EPQSLGKDPHTGEEITLRSGRFGPYVQRGD---GKDAKRASL 694
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+I E AL LL P ++G HP+ G+ I + R G V H T A++
Sbjct: 695 PKGWTPATIDHEKALALLSLPRDIGKHPETGKMISTGIGRYGPFVLHDGTYANLESVEDV 754
Query: 1123 NDVTLEKALEFLSGK 1137
+ L +A+ L+ K
Sbjct: 755 FSIGLNRAVSALADK 769
>gi|15892372|ref|NP_360086.1| DNA topoisomerase I [Rickettsia conorii str. Malish 7]
gi|20140670|sp|Q92IH1.1|TOP1_RICCN RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase I;
AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName: Full=Untwisting
enzyme
gi|15619520|gb|AAL02987.1| DNA topoisomerase I [Rickettsia conorii str. Malish 7]
Length = 776
Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust.
Identities = 328/784 (41%), Positives = 479/784 (61%), Gaps = 23/784 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGESISWHVAEVIKEKNQVKSDDFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTHVNDQKLEKFSIINEKNAKDLTKK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSHKFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKSYGDKYLP-TSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L LD+D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLDKDYYKLYELIWKRTIACQMENVIMDLVVANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK +PL V QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESMDDEAEEENKMLPPLKEQEPLKTKAVIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 526 FKKYVEYDFTAGLENELDAIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKICPSCNTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ + +E K++G E + LK GPYG Y+QLG+ PKR+ V + +
Sbjct: 642 NEGEPAAMPNENKVLGTDKDGVE-IYLKKGPYGPYIQLGKQEGKVKPKRSPVPASLNQND 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITL+ AL+LL P+ +G H + IM+ + G +++ SV K +++L+ A
Sbjct: 701 ITLDIALKLLSLPLKIGIHKDSDEEIMIGYGKFGPYIKYMGQFISVQKKYDFLNLSLDDA 760
Query: 1131 LEFL 1134
++ +
Sbjct: 761 MKLI 764
>gi|424874814|ref|ZP_18298476.1| DNA topoisomerase I, bacterial [Rhizobium leguminosarum bv. viciae
WSM1455]
gi|393170515|gb|EJC70562.1| DNA topoisomerase I, bacterial [Rhizobium leguminosarum bv. viciae
WSM1455]
Length = 884
Score = 617 bits (1592), Expect = e-173, Method: Compositional matrix adjust.
Identities = 343/805 (42%), Positives = 485/805 (60%), Gaps = 30/805 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M+WEV SA+
Sbjct: 2 NVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDSASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ A+ L LA+DPDREGEAI+WH+++ML ++ L+ V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSADGLFLATDPDREGEAISWHVLDMLNKKRVLNGK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMADPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +IG+ +A ++
Sbjct: 181 ESEIERFISEEYWNISALLKTPRGDE-----FEAKLVSANGKRLQPRAIGNGEDAGRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A++ V+ + + V++NP P+ TSTLQQ A++ L FSA+ TM++AQKLYEGV +
Sbjct: 236 LLEGASY-VVDSVEAKPVKRNPGPPFTTSTLQQAASSNLGFSASRTMQVAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA RS I +++G + PE+ PR Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARSAIVDQFGERYMPEK-PRFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D ++LY LIW R +A QM A + + +I N E
Sbjct: 353 IRPTDFDRSPDRVRKFLDADQIRLYELIWKRGIASQMASAEIERTTAEITADNKGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDEDGRLPEINAREALAKQKINSTQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TL L+DR+YVT+ R L P+ +GR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLATLRDRDYVTIDKRKLIPQPKGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTAD+E +LD +SAG WK +L D+W F + + L + V
Sbjct: 527 LESFFTKYVEYDFTADLEEKLDRISAGELNWKQVLRDFWKDFFAQIEDTKELRVTNVLDS 586
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L + +F + R C VCG G L K+ ++GA F+GC+ +P CNY +
Sbjct: 587 LNEALAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPDCNYTRQLSSE 644
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+ E D ++EPK +G P + E++ L+SG +G Y+Q G+ G KRAS+
Sbjct: 645 NGGEAD----GAALNEPKNLGTDPTTGEELTLRSGRFGPYIQRGD---GKEAKRASLPKG 697
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ I E A+ L+ P ++G HP+ G+ I + R G + H + A++ V
Sbjct: 698 WKPEDIDYEKAMALISLPRDIGKHPESGKMISSGIGRYGPFLLHDGSYANLETVEDVFSV 757
Query: 1126 TLEKALEFLSGKDVRRCGR-PKGKP 1149
L +A+ ++ K + GR +G P
Sbjct: 758 GLNRAVTVIAEKAKQAPGRGARGTP 782
>gi|350273393|ref|YP_004884706.1| DNA topoisomerase I [Rickettsia japonica YH]
gi|348592606|dbj|BAK96567.1| DNA topoisomerase I [Rickettsia japonica YH]
Length = 776
Score = 617 bits (1591), Expect = e-173, Method: Compositional matrix adjust.
Identities = 327/795 (41%), Positives = 483/795 (60%), Gaps = 23/795 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV P+++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPNENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGE+I+WH+ E++++++ + + R+ F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGESISWHVAEVIKEKNQVKSDDFFKRIAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDNNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTHVNDQKLEKFSIINEKNAKDLTEK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V K K+ R+ P+IT++LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQKFHVDKIEKKQQKRQPQPPFITASLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKSYGDKYLP-TSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L L++D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLEKDYYKLYELIWKRTIACQMENVIMDLVVANLASENKEYLAQANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ ++ EA +L LK +PL +V QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESMDDKAEEANKMLPPLKEQEPLKTKKVIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 526 FKKYVEYDFTAGLENELDAIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKVCPSCNTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ + +E K++G E + LK GPYG Y+QLGE PKR+ V + +
Sbjct: 642 NEGEPAAMPNENKVLGTDKDGVE-IYLKKGPYGPYIQLGEQEGKVKPKRSPVPASLNQND 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITL+ AL+LL P+ +G H + IM+ + G +++ SV K +++L+ A
Sbjct: 701 ITLDIALKLLSLPLKIGIHKDSDEEIMIGYGKFGPYIKYMGKFISVQKKYDFLNLSLDDA 760
Query: 1131 LEFLSGKDVRRCGRP 1145
++ + + +P
Sbjct: 761 MKLIEENKAKLEKKP 775
>gi|402486121|ref|ZP_10832953.1| DNA topoisomerase I subunit omega [Rhizobium sp. CCGE 510]
gi|401814777|gb|EJT07107.1| DNA topoisomerase I subunit omega [Rhizobium sp. CCGE 510]
Length = 884
Score = 617 bits (1591), Expect = e-173, Method: Compositional matrix adjust.
Identities = 341/805 (42%), Positives = 485/805 (60%), Gaps = 30/805 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M+WEV SA+
Sbjct: 2 NVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDSASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH+++ML ++ L+ V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSSDGLFLATDPDREGEAISWHVLDMLNKKRVLNGK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS +L L+CDR
Sbjct: 121 LDAMADPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVSLRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +IG+ +A ++
Sbjct: 181 ESEIERFISEEYWNISALLKTPRGDD-----FEARLVSANGKRLQPRAIGNGEDAGRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++ A++ V+ + V++NP P+ TSTLQQ A++ L FSA+ TM++AQKLYEGV +
Sbjct: 236 LLDGASY-VVDTIEAKPVKRNPGPPFTTSTLQQAASSNLGFSASRTMQIAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA RS I +++G + PE+ PR Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARSAIVDQFGERYMPEK-PRFYSAKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D ++LY LIW R +A QM A + + +I N E
Sbjct: 353 IRPTDFYRSPDRVRKFLDADQIRLYDLIWKRGIASQMASAEIERTTAEITADNKGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDEDGRLPEINARETLAKQKINSTQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TL L+DR+YVT+ R L P+ +GR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLATLRDRDYVTIDKRKLIPQAKGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTAD+E +LD +SAG WK +L D+W F + + L + V
Sbjct: 527 LESFFTKYVEYDFTADLEEKLDRISAGELNWKQVLRDFWKDFFAQIEDTKELRVTNVLDS 586
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L + +F + R C VCG G L K+ ++GA F+GC+ +P CNY +
Sbjct: 587 LNEALAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNYTRQLSSE 644
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+ E D ++EPK +G P + E++ L+SG +G Y+Q G+ G KRAS+
Sbjct: 645 NGGEAD----GAGLNEPKNLGTDPTTGEELTLRSGRFGPYIQRGD---GKEAKRASLPKG 697
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ I E A+ L+ P ++G HP+ G+ I + R G + H + A++ V
Sbjct: 698 WKPEEIDYEKAMALISLPRDIGKHPESGKMISSGIGRYGPFLLHDGSYANLETIEDVFSV 757
Query: 1126 TLEKALEFLSGKDVRRCGR-PKGKP 1149
L +A+ ++ K + GR +G P
Sbjct: 758 GLNRAVTVIAEKANQPPGRGSRGTP 782
>gi|402773727|ref|YP_006593264.1| DNA topoisomerase [Methylocystis sp. SC2]
gi|401775747|emb|CCJ08613.1| DNA topoisomerase [Methylocystis sp. SC2]
Length = 973
Score = 617 bits (1590), Expect = e-173, Method: Compositional matrix adjust.
Identities = 339/797 (42%), Positives = 488/797 (61%), Gaps = 38/797 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VV+VES KA+ I YLG + VL YGHVRDL A+ GSV PD DFSMVWE+ +
Sbjct: 2 NVVIVESAAKAQTINKYLGKNFNVLACYGHVRDLPAKDGSVDPDQDFSMVWEMDAKGAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +I A+ GA+ +ILA+DPDREGEAI+WH++++L ++ AL + + RVVF+ +T+A+I
Sbjct: 62 VAAIAEAVKGADKVILATDPDREGEAISWHLLDILNKKRALKDK-KIERVVFNAVTKAAI 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 QEAMAHPRQIDQALVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F +EYW++ A L K F A L K++ +L IG+ EA+D ++
Sbjct: 181 ELEIEKFVAREYWSLVAHLKTKAGEP-----FTARLVGADGKKIQRLDIGAGQEAEDFKK 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ +A F V+++ + V+++P P+ TSTLQQ+A+ KL + TM++AQ+LYEGV +
Sbjct: 236 ALETAAF-VVRSVEAKPVKRHPYAPFTTSTLQQEASRKLGLAPAITMRIAQRLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G AGLITYMRTDG+ ++ EA +R +I YG P+ PRKY K KNAQEAHEA
Sbjct: 294 GGETAGLITYMRTDGVDMAPEAVASVRGVIGREYGERFVPKV-PRKYTTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVF 767
IRPTD RLP ++ L+ + KLY LIW+RT+A QM+ A + + VDI ++
Sbjct: 353 IRPTDPARLPKEVAKYLEPEQAKLYELIWTRTIASQMESAEMERTTVDIDAKAGARALEL 412
Query: 768 RSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
R++ V F GF Y E D G E+E+ R L ++ G+P +++ Q
Sbjct: 413 RATGQVVRFPGFLELYQEGRDDG-----EDEDGGR------LPAMAQGEPCTREKIDATQ 461
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP R++E +LVK++EELGIGRPSTYASTL VL+DR+YV + + L PE +GR+V A
Sbjct: 462 HFTEPPPRFTEATLVKRMEELGIGRPSTYASTLAVLRDRDYVRIDKKRLVPEDKGRLVVA 521
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL +FS ++ FTAD+E +LD VS +WK +L D+W FS+ + L + +V
Sbjct: 522 FLESFFSRYVEFDFTADLEEKLDLVSNNEIDWKQVLRDFWRDFSTAVDGTKDLRVSEVLD 581
Query: 947 MLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
L + G +F P +D R CP C G L K+ +FGA F+GC+ +P C Y
Sbjct: 582 SLNELLGPHVFP--PKEDGSDPRLCPACNSGQLSLKIGKFGA--FVGCSNYPECRYTRTL 637
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYL-PKRAS 1061
D D + K++G +P + +V L+ G +G YVQ GE G PKRAS
Sbjct: 638 SPPTGDAADAARPGV-----KVLGVNPETGAEVTLRDGRFGAYVQEGEQEEGGEKPKRAS 692
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ D +TL A+ LL P + HP G PI+ + R G V+H +T A++ ++
Sbjct: 693 LPKSIRPDDLTLTQAIALLALPREVAKHPTSGDPIVAGIGRFGPYVQHGKTYANIGRDDD 752
Query: 1122 PNDVTLEKALEFLSGKD 1138
+ +A++ + K+
Sbjct: 753 VLSIGANRAIDLIVQKE 769
Score = 46.6 bits (109), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 25/133 (18%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
P+ + HP S + ++ G +G YVQ G+ A++ DV SI A++L+
Sbjct: 714 PREVAKHPTSGDPIVAGIGRFGPYVQHGK-------TYANIGRDDDVLSIGANRAIDLIV 766
Query: 1081 ------------RYPVN----LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
R P LG+HP+ G + ++ R G V + A++P+ + P
Sbjct: 767 QKESGGGGSRFSRGPAEPARALGDHPEGGA-VSVKSGRFGPYVNWGKVNATIPRAVDPAS 825
Query: 1125 VTLEKALEFLSGK 1137
+TLE+ALE ++ K
Sbjct: 826 LTLEQALELIAEK 838
>gi|34580624|ref|ZP_00142104.1| DNA topoisomerase I [Rickettsia sibirica 246]
gi|28262009|gb|EAA25513.1| DNA topoisomerase I [Rickettsia sibirica 246]
Length = 776
Score = 617 bits (1590), Expect = e-173, Method: Compositional matrix adjust.
Identities = 327/784 (41%), Positives = 479/784 (61%), Gaps = 23/784 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGE+I+WH+ E++++++ + + R+ F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGESISWHVAEVIKEKNQVKSDDFFKRIAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTHVNDQKLEKFSIINEKNAKDLTKK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQKFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRRLIDKSYGDKYLP-TSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L LD+D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLDKDYYKLYELIWKRTIACQMENVIMDLVVANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK + L EV QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESMDDEAEEENKMLPPLKEQELLKTKEVIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 526 FKKYVEYDFTAGLENELDAIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKICPSCNTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ + +E K++G E + LK GPYG Y+QLG+ PKR+ V + +
Sbjct: 642 NEGEPAAMPNENKVLGTDKDGVE-IYLKKGPYGPYIQLGKQEGKVKPKRSPVPASLNQND 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITL+ AL+LL P+ +G H + IM+ + G +++ SV K +++L+ A
Sbjct: 701 ITLDIALKLLSLPLKIGIHKDSDEEIMIGYGKFGPYIKYMDQFISVQKKYDFLNLSLDDA 760
Query: 1131 LEFL 1134
++ +
Sbjct: 761 MKLI 764
>gi|379712197|ref|YP_005300536.1| DNA topoisomerase I [Rickettsia philipii str. 364D]
gi|376328842|gb|AFB26079.1| DNA topoisomerase I [Rickettsia philipii str. 364D]
Length = 776
Score = 617 bits (1590), Expect = e-173, Method: Compositional matrix adjust.
Identities = 328/790 (41%), Positives = 481/790 (60%), Gaps = 23/790 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I + A+ + LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKDATKADAVYLATDPDREGESISWHVAEVIKEKNQVKSDDFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LT ++L + SI + AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTQVNDQKLEKFSIINEKNAKDLTKK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQKFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKSYGDKYLP-TSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L LD+D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLDKDYYKLYELIWKRTIACQMENVIMDLVVANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK +PL V QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESMDDEAEEENKMLPPLKEQEPLKTKAVIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 526 FKKYVEYDFTAGLENELDAIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKICPSCHTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ + +E K++G E + LK GPYG Y+QLG+ PKR+ V + +
Sbjct: 642 NEGEPAAMPNENKVLGTDKDGVE-IYLKKGPYGPYIQLGKQEGKVKPKRSPVPASLNQND 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITL+ AL+LL P+ +G H + IM+ + G +++ SV K +++L+ A
Sbjct: 701 ITLDIALKLLSLPLKIGIHKDSDEEIMIGYGKFGPYIKYMGKFISVQKKYDFLNLSLDDA 760
Query: 1131 LEFLSGKDVR 1140
++ + V+
Sbjct: 761 MKLIEENKVK 770
>gi|359407678|ref|ZP_09200153.1| DNA topoisomerase I, bacterial [SAR116 cluster alpha proteobacterium
HIMB100]
gi|356677311|gb|EHI49657.1| DNA topoisomerase I, bacterial [SAR116 cluster alpha proteobacterium
HIMB100]
Length = 863
Score = 616 bits (1589), Expect = e-173, Method: Compositional matrix adjust.
Identities = 344/788 (43%), Positives = 473/788 (60%), Gaps = 27/788 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD Y VL SYGHVRDL ++ GSV+PD DF M W++ + +
Sbjct: 3 VVVVESPAKAKTINRYLGDGYTVLASYGHVRDLPSKDGSVKPDQDFEMSWQISDSGGLRI 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+ I AL GA+ LILA+DPDREGEAI+WH+ E+L++ ++ +I RVVF+EIT+ +I
Sbjct: 63 RDISKALKGADRLILATDPDREGEAISWHVCELLKE-NSKTRDIPYERVVFNEITKTAIL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R +D +L++AYLARRALD+LIGF++SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 122 KAIETPRCLDIDLIEAYLARRALDHLIGFSLSPVLWRKLPGSRSAGRVQSVALRLICERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+ E+W+V+ E + A LTH ++L +LS+GS +A +Q+
Sbjct: 182 AEIEAFRTDEFWSVDTDFTTTEGAQI-----MARLTHLDGEKLGKLSLGSEADALAAQQR 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I +A++QV + + R+ P+ TSTLQQ+A+ KL FSA+ TM++AQKLYEG+ L
Sbjct: 237 IQAASWQVSSIETKRVRRRPAPPFTTSTLQQEASRKLGFSASRTMQIAQKLYEGINLGSE 296
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S EA +IR I E G+ PE+ PR Y K NAQEAHEAIR
Sbjct: 297 TT-GLITYMRTDGVQMSFEAIGQIRDAIGETIGAEFVPEK-PRLYKSKAANAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT I R P + LD D +LY LIW R +A QM A + Q D+ + + R++
Sbjct: 355 PTSIWRHPDAVRKRLDFDQFRLYELIWKRAIASQMADAQLDQTAADLSATTDHLTMRANG 414
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF Y ED D + E+ IL L G L + +V +QH TQ
Sbjct: 415 SVIVFDGFMKIYREDRD-------DQEDKAADPQSRILPPLSQGQDLRVEQVHPEQHFTQ 467
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY++ SLVK++EELGIGRPSTYAS ++V++ R YV + PE RGR+VS FL +
Sbjct: 468 PPPRYTDASLVKRMEELGIGRPSTYASIMQVIEKRGYVLKDGKRFIPEHRGRIVSTFLEN 527
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+FS +Y FTA +E+ LD VS G +W+ LL +W F++ A L + V K L+
Sbjct: 528 FFSRYVEYDFTAALESRLDEVSDGKLDWRSLLRQFWVDFAAAIDQAMELSVPDVMKTLDS 587
Query: 951 TFGDSLFASLPNK--DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
F N R C CG G L K+ +FG FIGCN +P C + + + +
Sbjct: 588 ELEKLFFTPDENGQIQRVCSKCGSGHLELKLGKFGP--FIGCNNYPDCRF-TRQIVAAGE 644
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQL-GEDRTGYLPKRASVSHIKD 1067
ED+ Q +D+ +L+G S V LK GPYG YVQL GED PKR+SV K
Sbjct: 645 SEDSSQ---ELDDDRLLGTDEVSGLPVYLKKGPYGSYVQLGGEDEKK--PKRSSVPKGKP 699
Query: 1068 VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
+ + L AL LL P ++G HP+ I L R G ++++ S+ V +
Sbjct: 700 LAEVDLVYALGLLSLPRDIGLHPQSSDMIQAGLGRYGPYLKYQGKFTSLKDGDDVLSVGI 759
Query: 1128 EKALEFLS 1135
+A++ L+
Sbjct: 760 NRAVDLLA 767
>gi|157964407|ref|YP_001499231.1| DNA topoisomerase I [Rickettsia massiliae MTU5]
gi|157844183|gb|ABV84684.1| DNA topoisomerase I [Rickettsia massiliae MTU5]
Length = 776
Score = 616 bits (1589), Expect = e-173, Method: Compositional matrix adjust.
Identities = 328/784 (41%), Positives = 478/784 (60%), Gaps = 23/784 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGESISWHVAEVIKEKNQVKSDDFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH + L + SI + AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTHVNDQTLEKFSIINEKNAKDLIEK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V K K+ R+ P+ITS+LQQDAA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQKFHVDKIEKKQQKRQPQPPFITSSLQQDAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKSYGDKYLP-TSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L L++D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLEKDYYKLYELIWKRTIACQMENVIMNLVVANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK +PL EV QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESVDDEAEEENKMLPPLKEQEPLKTKEVIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 526 FKKYVEYDFTAGLENELDEIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + C C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKVCTSCNTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ + +E K++G E + LK GPYG Y+QLGE PKR+ V + +
Sbjct: 642 NEGEPAAMPNENKVLGTDKDGVE-IYLKKGPYGPYIQLGEQEGKVKPKRSPVPASLNQND 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITL+ AL+LL P+ +G H + IM+ + G +++ +V K +++L+ A
Sbjct: 701 ITLDIALKLLSLPLKIGIHKDSDEEIMVGYGKFGPYIKYMGKFIAVQKKYDFLNLSLDDA 760
Query: 1131 LEFL 1134
++ +
Sbjct: 761 MKLI 764
>gi|424881092|ref|ZP_18304724.1| DNA topoisomerase I, bacterial [Rhizobium leguminosarum bv. trifolii
WU95]
gi|392517455|gb|EIW42187.1| DNA topoisomerase I, bacterial [Rhizobium leguminosarum bv. trifolii
WU95]
Length = 884
Score = 616 bits (1589), Expect = e-173, Method: Compositional matrix adjust.
Identities = 341/805 (42%), Positives = 486/805 (60%), Gaps = 30/805 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M+WEV SA+
Sbjct: 2 NVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDQDFEMIWEVDSASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ A+ L LA+DPDREGEAI+WH+++ML ++ L+ V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSADGLFLATDPDREGEAISWHVLDMLNKKRVLNGK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMADPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +IG+ +A ++
Sbjct: 181 ESEIERFISEEYWNISALLKTPRGDE-----FEARLVSANGKRLQPRAIGNGEDAGRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A++ V+ + + V++NP P+ TSTLQQ A++ L FSA+ TM++AQKLYEGV +
Sbjct: 236 LLEGASY-VVDSVEAKPVKRNPGPPFTTSTLQQAASSNLGFSASRTMQVAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA RS I +++G+ + PE+ PR Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARSAIVDQFGARYMPEK-PRFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D ++LY LIW R +A QM A + + +I N E
Sbjct: 353 IRPTDFYRSPDRVRKFLDADQIRLYELIWKRGIASQMASAEIERTTAEITADNKSEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDEDGRLPEIIAREALAKQKINSTQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR+YVT+ R L P+ +GR+V+AF
Sbjct: 467 FTEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDRDYVTIDKRKLIPQAKGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTAD+E +LD +SAG WK +L D+W F + + L + V
Sbjct: 527 LESFFTKYVEYDFTADLEEKLDRISAGELNWKQVLRDFWKDFFAQIEDTKELRVTNVLDS 586
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L + +F + R C VCG G L K+ ++GA F+GC+ +P CNY +
Sbjct: 587 LNEALAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPDCNYTRQLSSE 644
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+ + D ++EPK +G P + E++ L+SG +G Y+Q G+ G KRAS+
Sbjct: 645 NGGDAD----GAALNEPKNLGTDPTTGEELTLRSGRFGPYIQRGD---GKEAKRASLPKG 697
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ I E A+ L+ P ++G HP+ G+ I + R G + H + A++ V
Sbjct: 698 WKPEDIDYEKAMALISLPRDIGKHPESGKMISSGIGRYGPFLLHDGSYANLETVEDVFSV 757
Query: 1126 TLEKALEFLSGKDVRRCGR-PKGKP 1149
L +A+ ++ K + GR +G P
Sbjct: 758 GLNRAVTVIAEKANQAPGRGARGTP 782
>gi|374332126|ref|YP_005082310.1| DNA topoisomerase I [Pseudovibrio sp. FO-BEG1]
gi|359344914|gb|AEV38288.1| DNA topoisomerase I [Pseudovibrio sp. FO-BEG1]
Length = 926
Score = 616 bits (1589), Expect = e-173, Method: Compositional matrix adjust.
Identities = 352/803 (43%), Positives = 482/803 (60%), Gaps = 54/803 (6%)
Query: 355 VESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSI 414
+ES KAK I YLG Y VL SYGHVRDL + GSV PDDDF+M W V S + L I
Sbjct: 1 MESPAKAKTINKYLGKDYTVLASYGHVRDLPPKDGSVLPDDDFAMSWSVDSKSQKRLSDI 60
Query: 415 KVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVAL 474
A+ A+ LILA+DPDREGEAI+WH++E+L+++ + ++ V RVVF+ IT++SI A+
Sbjct: 61 ASAVKEADRLILATDPDREGEAISWHVLEVLKKK-RVLKDKKVERVVFNAITKSSILEAM 119
Query: 475 QAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEI 534
+ RE+D LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+C RE EI
Sbjct: 120 KNPRELDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCQRENEI 179
Query: 535 DEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINS 594
+ F QEYW++ A L+ E+ + A LT F +++ +L I + EA I+Q ++
Sbjct: 180 ETFLSQEYWSILANLNTPENAPVQ-----ARLTGFDGQKITRLDIKNEQEATTIKQMLDG 234
Query: 595 ANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTA 653
ANF V N + R+NP P+ TSTLQQ+A+ KL F+A TM++AQKLYEG + G
Sbjct: 235 ANFSV-SNVESKPQRRNPYAPFTTSTLQQEASRKLGFAAARTMQVAQKLYEGANI-GGET 292
Query: 654 AGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPT 713
GLITYMRTDG+ I+ EA R +I RYG + PE+ PR Y K KNAQEAHEAIRPT
Sbjct: 293 TGLITYMRTDGVQIAPEAITSARGVIASRYGDEYVPEK-PRMYSSKAKNAQEAHEAIRPT 351
Query: 714 DIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVFRSSC 771
D+ R P ++ LDED +LY LIW RT+A QM+ A + + VDI N + R+S
Sbjct: 352 DLTRHPRDMAKFLDEDGARLYELIWKRTIASQMESAVLERTTVDIDAVNGAKKAALRASG 411
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S V F GF Y+ E ++++ E L + GD L +E QH T+P
Sbjct: 412 SVVRFDGFLTLYQ----------EGKDDEEDEESKRLPPMTRGDSLGRKGIEANQHFTEP 461
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P R++E +LVKK+EELGIGRPSTYA+TL+ L+DR YV + + L P+ +GR+V+AFL +
Sbjct: 462 PPRFTEATLVKKMEELGIGRPSTYAATLQTLRDRGYVELDKKRLIPQDKGRLVTAFLEDF 521
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F+ +Y FTA +E +LD +SAG EWK +L D+W+ F C +V L +T
Sbjct: 522 FNRYVEYDFTASLEDQLDKISAGDLEWKAVLRDFWNPFHEICDEVIKRSNTEVLDALNET 581
Query: 952 FGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQH------------- 993
+F P+K+ R CP C G L KVSRFGA F+GC+ +
Sbjct: 582 LKAHVF---PDKEDGSDPRKCPKCDTGRLSLKVSRFGA--FVGCSNYNKDKKDGKEPNEN 636
Query: 994 -PRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDR 1052
P C+Y + G D + D P+++G P + +V L++G +G YVQLGE+
Sbjct: 637 PPHCDYTRQLTSGGDSDA-----GAAADGPQVLGIDPETGLEVSLRTGRFGPYVQLGEEA 691
Query: 1053 TGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRT 1112
PKR+S+ + LE AL+LL P +G HP+DG+ I L R G V H T
Sbjct: 692 K---PKRSSLPRGWSTADLDLEKALQLLSLPREVGTHPEDGKTISAGLGRFGPFVLHDGT 748
Query: 1113 IASVPKNMKPNDVTLEKALEFLS 1135
A++ + V + +A+ L+
Sbjct: 749 YANLDSPDEVFSVGINRAVTLLA 771
Score = 44.7 bits (104), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 26/174 (14%)
Query: 977 FKVSRFGAGYFIGCNQHPRCNYIAKTL-YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKV 1035
+ RFG +G P+ + + + D D E LQ + P+ +G HP + +
Sbjct: 676 LRTGRFGPYVQLGEEAKPKRSSLPRGWSTADLDLEKALQL---LSLPREVGTHPEDGKTI 732
Query: 1036 LLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL-------------RY 1082
G +G +V D T A++ +V S+ + A+ LL
Sbjct: 733 SAGLGRFGPFVL--HDGT-----YANLDSPDEVFSVGINRAVTLLAEKRAKGGGRGAAAK 785
Query: 1083 PV-NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLS 1135
P+ LGNHP DG I + R G V+ + A++PK++ P VTLE+A+E ++
Sbjct: 786 PLKELGNHP-DGGAINVYSGRYGPYVKWEKINATLPKDVAPEAVTLEQAIELVN 838
>gi|319408532|emb|CBI82185.1| DNA topoisomerase I [Bartonella schoenbuchensis R1]
Length = 849
Score = 616 bits (1589), Expect = e-173, Method: Compositional matrix adjust.
Identities = 340/808 (42%), Positives = 491/808 (60%), Gaps = 39/808 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG Y+V+ S+GHVRDL+A+ GSV PD DF+M W+V +A+ L
Sbjct: 3 IVIVESPAKAKTINKYLGPQYKVVASFGHVRDLSAKDGSVLPDQDFAMKWDVDTASAKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A++LILA+DPDREGEAI+WHI+++L Q+ L + V RVVF+ IT+ S+
Sbjct: 63 NEIAKAVKEADSLILATDPDREGEAISWHILDVLNQKKVLKDK-PVKRVVFNAITKKSVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL +ICDRE
Sbjct: 122 DAMNNPRDIDISLVDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRIICDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F ++YW++ L ++ +F A L F ++L +L I S +A+ I
Sbjct: 182 SEIEHFIKEDYWSITTSL-----KTIRDDNFYARLVAFNQEKLGKLDIKSLEQAEKIRSM 236
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A ++ + N + +++NP+P + TSTLQQ A++KL FS + TM++AQKLYEGV++ +
Sbjct: 237 LEEAEYRTL-NVEAKPIKRNPSPPFTTSTLQQAASSKLGFSPSRTMRIAQKLYEGVEI-N 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G +GLITYMRTDG+ ++ EA R +I E +G+++ PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETSGLITYMRTDGVQMATEAIDSARKVIKESFGNNYVPEK-PRFYSTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI------GNADES 764
RPTD +R P + LD D KLY LIW R +A QM A + + V+I NA+
Sbjct: 354 RPTDFQRNPNQIRNFLDSDQAKLYELIWKRAIASQMCSAEIERTTVEIQAIQGKNNAN-- 411
Query: 765 IVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVEL 824
R++ S + F GF +AY D + +EEN + A L + + L +VE+
Sbjct: 412 --LRATGSVIRFDGFISAYTD--------QRDEENSEDDESARLPHINANEALTKEKVEV 461
Query: 825 KQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMV 884
QH T+PP RYSE SL+KKLEELGIGRPSTYAS L +L +R Y R L P+ +GR+V
Sbjct: 462 TQHTTEPPPRYSEASLIKKLEELGIGRPSTYASILAILSERGYTVTDKRKLVPDAKGRIV 521
Query: 885 SAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV 944
+AFL +F+ +Y FTA++E +LD +S G WK +L D+W+ F++ T Q L I V
Sbjct: 522 TAFLESFFNRYVEYDFTANLEEKLDLISDGKLAWKDVLHDFWNEFNASVTDIQKLRITHV 581
Query: 945 EKMLEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
L F + + RSCP+C G L K+ R+GA F+GC+ +P C Y +
Sbjct: 582 LDALNVILAPLAFPTREDGSDPRSCPLCTNGQLSLKLGRYGA--FVGCSNYPECKY-TRQ 638
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
L D +EE R+ DEP ++G + + + L +G +G Y+QLG+D+ KR +
Sbjct: 639 LGIDTEEESEAVRS---DEPLVLGVDHETGKDIFLCTGRFGSYIQLGQDKGA---KRVGL 692
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+I L AL LL P +G HP+ G+ I + R G + H A++ +
Sbjct: 693 PKEWARKNIDLNQALSLLSLPREIGVHPETGKIITATIGRYGPYLSHDGKSANLSDINEV 752
Query: 1123 NDVTLEKALEFLSGKDVRRCGRPKGKPK 1150
++ + +A+ L+ K + R + P+
Sbjct: 753 FEIGINRAVTVLAEKQENKTKRGRITPE 780
>gi|407777645|ref|ZP_11124913.1| DNA topoisomerase I subunit omega [Nitratireductor pacificus pht-3B]
gi|407300445|gb|EKF19569.1| DNA topoisomerase I subunit omega [Nitratireductor pacificus pht-3B]
Length = 872
Score = 616 bits (1589), Expect = e-173, Method: Compositional matrix adjust.
Identities = 342/803 (42%), Positives = 477/803 (59%), Gaps = 31/803 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF+M W V + L
Sbjct: 3 LVIVESPAKAKTINKYLGANYKVLASFGHVRDLPAKDGSVRPDEDFAMSWAVDGPSSKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A+ LILA+DPDREGEAI+WH++E+L+Q+ L + + RVVF+ IT+ ++
Sbjct: 63 SDIAKAMKDADTLILATDPDREGEAISWHVLEVLKQKRVLKDK-PIRRVVFNAITKKAVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ A RE+DA LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDRE
Sbjct: 122 DAMAAPREVDAPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F +EYW + A L + + F A LT +L +L I + +A I+
Sbjct: 182 AEIERFVREEYWQIAAQLATPRAET-----FEARLTAVDGNKLQKLDIKNKEQADGIKAM 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A+F+ + + R P+ TSTLQQ A+++L F A+ TM++AQ+LYEG+ + G
Sbjct: 237 LEGASFKALSVEAKPTRRNPAPPFTTSTLQQAASSRLGFGASRTMQVAQRLYEGIDI-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AGLITYMRTDG+ ++ EA + R+ I + +G PE+ PR Y K KNAQEAHEAIR
Sbjct: 296 ETAGLITYMRTDGVQMAPEALDQARAAIGKEFGEKFLPEK-PRFYSVKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVFRS 769
PTD R P + LD D +LY +IW R +A QMQ A + + V++ N + R+
Sbjct: 355 PTDFSRTPDQVRKYLDADQARLYEIIWKRAIASQMQAAEIERTTVELEAVNGARNANLRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S + F GF AAY VD EE E L + G+ +E QH T
Sbjct: 415 VGSVIRFEGFLAAY-GVD--------KEETPDDEESRRLPQILEGETQTCQGIEATQHST 465
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE SL+KK+EELGIGRPSTYA+TLK L+DR+YVT+ R L P+ +GR+V+AFL
Sbjct: 466 EPPPRYSEASLIKKMEELGIGRPSTYAATLKTLEDRDYVTIDKRRLMPQAKGRLVTAFLE 525
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
++F +Y FTA +E +LD +S G WK +L D+W+ FS + + L + V L
Sbjct: 526 NFFERYVEYDFTAGLEEKLDKISDGQLSWKDVLRDFWADFSGHVDEIKELRVTNVLDALN 585
Query: 950 KTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
+ F S + R CP CG G L K+ R GA F+GC+ +P C + + +G+
Sbjct: 586 EELAPLAFPSREDGSDPRVCPRCGTGQLSLKLGRHGA--FVGCSNYPECGFTRQ--FGEA 641
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKD 1067
+ N D K++G P + E++ L+SG +G YVQ GE G KR+S+
Sbjct: 642 GNGEDGDNGLNGD--KVLGKDPHTSEEITLRSGRFGPYVQRGE---GKEAKRSSLPKGWT 696
Query: 1068 VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
DSI +E AL LL P ++G HP+ G+ I L R G + H A++ + L
Sbjct: 697 PDSIDIEKALALLSLPRDIGKHPESGKMISAGLGRYGPFLLHDGGYANLETIEDVFSIGL 756
Query: 1128 EKALEFLSGKDVRRC-GRPKGKP 1149
+A+ ++ K + GR +G P
Sbjct: 757 NRAVTVIAEKKAKGANGRGRGTP 779
>gi|452965258|gb|EME70283.1| DNA topoisomerase I subunit omega [Magnetospirillum sp. SO-1]
Length = 902
Score = 616 bits (1588), Expect = e-173, Method: Compositional matrix adjust.
Identities = 355/828 (42%), Positives = 483/828 (58%), Gaps = 56/828 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG + VL SYGH+RDL + GSVRPD+ F+M WE + +
Sbjct: 3 VVVVESPAKAKTINKYLGSDFHVLASYGHIRDLPPKDGSVRPDEGFAMDWETDGKSERQI 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K I A+ GA+ L LA+DPDREGEAI+WH+ ++L+++ AL + + V RVVF+EIT++++
Sbjct: 63 KEIVAAVKGADKLFLATDPDREGEAISWHVRQVLEERRAL-KGVEVKRVVFNEITKSAVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R+I LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 122 DAMRNPRDIHQELVDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F P+EYWT+ A + L A LTH K+L++ + S A+D E K
Sbjct: 182 SEIESFNPREYWTIAADFLTPKGALLS-----AGLTHLGGKKLDKFDLSSEALARDAETK 236
Query: 592 INSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
SA + V +R R+NP P+ TST+QQ+A+ KL F+A TM+LAQ+LYEGV +
Sbjct: 237 AASARYSV-AAVERKRTRRNPYPPFTTSTVQQEASRKLYFAAARTMQLAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA R++I E +G + PE PR Y K KNAQEAHEAI
Sbjct: 295 GETVGLITYMRTDGVQMAAEAIAGARAVIAEDFGKAYVPE-APRLYKTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ R P ++ LD D L+LY LIW RT+A QM A + Q+ VDI IVFR++
Sbjct: 354 RPTDLARRPEDVARYLDRDQLRLYELIWKRTIASQMAAAELDQVGVDIAGDRHGIVFRAT 413
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S V F GF Y + + +++D EA +L + D + + +QH TQ
Sbjct: 414 GSVVVFDGFLKVYRE---------DKDDSDDDEAEKLLPDVTEKDAMERKAMRTEQHFTQ 464
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP R+SE SLVK++EELGIGRPSTYAS L VLQ+RNYV + R PE RGR+V+AFL
Sbjct: 465 PPPRFSEASLVKRMEELGIGRPSTYASILSVLQERNYVRLDQRRFIPEDRGRLVTAFLES 524
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F +Y+FTAD+E +LD++S G +WK +L +W FS + L + QV L++
Sbjct: 525 FFGRYVEYNFTADLENQLDDISGGRIDWKKVLEVFWKDFSGAVDGTKDLRVGQVLDALDE 584
Query: 951 TFGDSLFA--SLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
G F + RSCP C G L K+ +FGA FIGC+ +P C +
Sbjct: 585 LLGPHFFPDDGSGHDPRSCPTCNAGRLSLKLGKFGA--FIGCSAYPECRFTRPL------ 636
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT-----GYLPK----- 1058
+ PK +G+ P S V L+ GPYG YVQLG++ T +P+
Sbjct: 637 TTGGEGEEEVREGPKDLGNDPESGLPVTLRKGPYGHYVQLGDETTLKAEPAPVPEKGKKA 696
Query: 1059 ----------RASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVR 1108
R S+ + +TL+ A LL P +G HP+ + I + R G V
Sbjct: 697 AKAVKAPKPKRVSLYKGLEPGGVTLDIACRLLALPRLIGTHPETAKSISAGVGRFGPYVV 756
Query: 1109 HRRTIASVPKNMKPNDVTLEKALEFLS-------GKDVRRCGRPKGKP 1149
H S+ K+ V + +A+E LS +R G +GKP
Sbjct: 757 HDGVYKSLAKDDDVLVVGMNRAMELLSQAKGRGGNGPLRTLGEHEGKP 804
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+LIG HP + + + G +G YV G S++ DV + + A+ELL
Sbjct: 731 PRLIGTHPETAKSISAGVGRFGPYVV----HDGVY---KSLAKDDDVLVVGMNRAMELLS 783
Query: 1082 Y--------PV-NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALE 1132
P+ LG H +G+P+ L R G V A++PK+ + VTLE AL
Sbjct: 784 QAKGRGGNGPLRTLGEH--EGKPVTLHEGRYGPYVSRDGVHATLPKDSAIDTVTLEAALV 841
Query: 1133 FLSGKDVRRCGRP 1145
++ K + +P
Sbjct: 842 LIAAKAAKGPSKP 854
>gi|398353193|ref|YP_006398657.1| DNA topoisomerase 1 [Sinorhizobium fredii USDA 257]
gi|390128519|gb|AFL51900.1| DNA topoisomerase 1 [Sinorhizobium fredii USDA 257]
Length = 888
Score = 615 bits (1587), Expect = e-173, Method: Compositional matrix adjust.
Identities = 338/794 (42%), Positives = 474/794 (59%), Gaps = 33/794 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES +KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF M WEV A+
Sbjct: 4 NVVVVESPSKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVRPDEDFEMSWEVDGASAKR 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH++++L+++ + + V RVVF+ IT+ ++
Sbjct: 64 MKDIADAVKSSDGLFLATDPDREGEAISWHVLDLLKKKKVIGDK-PVKRVVFNAITKKAV 122
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID +LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 123 LDAMADPRDIDISLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 182
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL SIG+ EA ++
Sbjct: 183 EGEIERFVTEEYWNISALLKTPRGDE-----FEARLVSADGKRLQPRSIGNGEEANRLKA 237
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ A++ V + + R P+ TSTLQQ A++KL FSA+ TM++AQKLYEGV +
Sbjct: 238 LLDGASYVVASVEAKPVKRHPAPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVDI-G 296
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA R I ++G + PE+ PR Y K KNAQEAHEAI
Sbjct: 297 GETVGLITYMRTDGVQMAPEAIDAARRAIGSQFGPRYLPEK-PRFYSTKAKNAQEAHEAI 355
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P + LD D LKLY L+W R +A QM A + + +I N + R
Sbjct: 356 RPTDFNRTPDQVRRFLDGDMLKLYDLVWKRGIASQMASAEIERTTAEILADNGGKKAGLR 415
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S + F GF AAY D+ + + +E+ R L + + L ++ QH
Sbjct: 416 ATGSVIRFDGFIAAYTDMKEDGEQADDGDEDGR------LPEINARENLAKQKINATQHF 469
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE +L+KK+EELGIGRPSTYA+T+ L DR+YV + R L P+ +GR+V+AFL
Sbjct: 470 TEPPPRYSEATLIKKMEELGIGRPSTYAATISTLVDRDYVEIDKRKLVPQAKGRLVTAFL 529
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F+ +Y FTA +E +LD +SAG WK +L ++W F S + L + V L
Sbjct: 530 ESFFARYVEYDFTASLEAKLDQISAGELNWKDVLREFWKDFFSQIEDTKELRVTNVLDAL 589
Query: 949 EKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
+ +F P ++ R C VCG G L K+ ++GA F+GC+ +P CNY +
Sbjct: 590 NEELAPLVF---PKREDGGDPRICQVCGTGKLSLKLGKYGA--FVGCSNYPECNYTRQLS 644
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
+ E + N EP+ +G P + E++ L+SG +G YVQ G+ G KRAS+
Sbjct: 645 SESNGEAEAAASN----EPQSLGKDPHTGEEITLRSGRFGPYVQRGD---GKDAKRASLP 697
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
+I E AL LL P ++G HP+ G+ I L R G V H T A++
Sbjct: 698 KGWTPATIDHEKALALLSLPRDIGKHPETGKMISTGLGRYGPFVLHDGTYANLESVEDVF 757
Query: 1124 DVTLEKALEFLSGK 1137
+ L +A+ L+ K
Sbjct: 758 SIGLNRAVSALADK 771
>gi|16126690|ref|NP_421254.1| DNA topoisomerase I [Caulobacter crescentus CB15]
gi|221235471|ref|YP_002517908.1| DNA topoisomerase I [Caulobacter crescentus NA1000]
gi|13423998|gb|AAK24422.1| DNA topoisomerase I [Caulobacter crescentus CB15]
gi|220964644|gb|ACL96000.1| DNA topoisomerase I [Caulobacter crescentus NA1000]
Length = 899
Score = 615 bits (1587), Expect = e-173, Method: Compositional matrix adjust.
Identities = 354/809 (43%), Positives = 479/809 (59%), Gaps = 48/809 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y VL SYGH+RDL ++ GSV PD+DF+M WEV + A
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYTVLASYGHIRDLPSKDGSVEPDNDFAMSWEVDAKASKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ I A+ A+ LILA+DPDREGEAI+WH++E+L ++ AL + TV RV F+ IT+ ++
Sbjct: 62 VSDIVDAMKKADRLILATDPDREGEAISWHVLEVLNKKKALKDK-TVQRVTFNAITKTAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++A R++D LV+AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ DR
Sbjct: 121 TEAMKAPRDLDMELVEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLVVDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI+ FK QEYWTV+A + S + F A L + K+L + +G+ T A +
Sbjct: 181 ELEIERFKTQEYWTVDADV------SAGSDPFLARLVKHEGKKLTKFDLGNETSALTAKA 234
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +A F+V K+ R P+ TSTLQQ+AA KL FSA TM+ AQKLYEGV +
Sbjct: 235 AVEAAVFKVEAVEKKPGKRSPAPPFTTSTLQQEAARKLGFSAQRTMQAAQKLYEGVDI-G 293
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA E R +I YG + P+ PR Y K KNAQEAHEAI
Sbjct: 294 GETVGLITYMRTDGVSMAPEAIFEARDVIGAVYGKEYVPDS-PRMYKSKAKNAQEAHEAI 352
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT + R P L L+ + +LY LIW RT+A QM+ A + + VD+ +AD R++
Sbjct: 353 RPTAMGRNPGSLR--LEPELGRLYELIWKRTIASQMESARIERTTVDLTSADGQTGLRAT 410
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
V+F G+ A YE E +++ E A L ++ G + + QH T+
Sbjct: 411 GQVVQFPGYLAVYE----------EGRDDEGDEDSARLPAITEGASAKVLKSRADQHFTE 460
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKK+EELGIGRPSTYAS L VL+DR YV ++ + PE +GR+V+AFL
Sbjct: 461 PPPRYSEASLVKKMEELGIGRPSTYASVLGVLRDREYVRMEKQRFIPEDKGRLVTAFLEQ 520
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F +Y FTA +E +LD VS G +WK L ++W F + L V L +
Sbjct: 521 FFKRYVEYDFTAALEEKLDLVSDGKLDWKEFLREFWKDFHAAVGEIAELRTTNVLDALNE 580
Query: 951 TFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK--TL 1003
G +F P+K R CP CG G L K +FGA FIGC+ +P C Y +
Sbjct: 581 ALGPHIF---PDKGDGSNPRLCPTCGSGQLSLKTGKFGA--FIGCSNYPECRYTRQLGVS 635
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYV-QLGEDRTGYLPKRASV 1062
GD D E K +G +PA+ V LK+G +G YV +L + + PKR+S+
Sbjct: 636 EGDGDAESA---------DKQLGLNPATGLAVWLKNGRFGPYVEELAAEGSSDKPKRSSL 686
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
++ +E AL LL P +G HP DG+ I L R G V H T A++ +
Sbjct: 687 PKGWIASAMDMEKALRLLSLPREVGKHPDDGKVITAGLGRFGPFVLHDGTYANLENADEV 746
Query: 1123 NDVTLEKALEFLSGKDVRRCGRPKGKPKR 1151
DV L +A+ L+ K R G G+P+R
Sbjct: 747 FDVGLNRAVAILADK---RAG--GGRPQR 770
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 22/129 (17%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
P+ +G HP + + G +G +V D T A++ + +V + L A+ +L
Sbjct: 707 PREVGKHPDDGKVITAGLGRFGPFVL--HDGT-----YANLENADEVFDVGLNRAVAILA 759
Query: 1081 --------------RYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
LGNHP+DG+PI + R G ++H T A+VPK P +T
Sbjct: 760 DKRAGGGRPQRGAAAALAELGNHPEDGKPIRVLSGRFGPYIKHGDTNANVPKGKDPAAIT 819
Query: 1127 LEKALEFLS 1135
LE+AL ++
Sbjct: 820 LEEALALIA 828
>gi|424914522|ref|ZP_18337886.1| DNA topoisomerase I, bacterial [Rhizobium leguminosarum bv. trifolii
WSM597]
gi|392850698|gb|EJB03219.1| DNA topoisomerase I, bacterial [Rhizobium leguminosarum bv. trifolii
WSM597]
Length = 884
Score = 615 bits (1587), Expect = e-173, Method: Compositional matrix adjust.
Identities = 341/805 (42%), Positives = 483/805 (60%), Gaps = 30/805 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M+WEV A+
Sbjct: 2 NVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDGASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH+++ML ++ L+ V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSSDGLFLATDPDREGEAISWHVLDMLNKKRVLNGK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMADPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +IG+ +A ++
Sbjct: 181 ESEIERFISEEYWNISALLKTPRGDE-----FEARLVSANGKRLQPRAIGNGEDAGRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++ A++ V+ + V++NP P+ TSTLQQ A++ L FSA+ TM++AQKLYEGV +
Sbjct: 236 LLDGASY-VVDTVEAKPVKRNPGPPFTTSTLQQAASSNLGFSASRTMQIAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ I+ EA RS I +++G + PE+ R Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQIAPEAIDAARSAIVDQFGERYMPEKA-RFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D ++LY LIW R +A QM A + + +I N E
Sbjct: 353 IRPTDFYRSPDRVRQFLDADQIRLYDLIWKRGIASQMASAEIERTTAEITADNKGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDEDGRLPEINARETLAKQKINSTQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TL L+DR+YVT+ R L P+ +GR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLATLRDRDYVTIDKRKLIPQAKGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTAD+E +LD +SAG WK +L D+W F + + L + V
Sbjct: 527 LESFFTKYVEYDFTADLEEKLDRISAGELNWKQVLRDFWRDFFAQIEDTKELRVTNVLDS 586
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L + +F + R C VCG G L K+ ++GA F+GC+ +P CNY +
Sbjct: 587 LNEALAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNYTRQLSSE 644
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+ E D ++EPK +G P + E++ L+SG +G Y+Q G+ G KRAS+
Sbjct: 645 NSGEAD----GAALNEPKNLGTDPTTGEELTLRSGRFGPYIQRGD---GKEAKRASLPKG 697
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ I E A+ L+ P ++G HP+ G+ I + R G + H + A++ V
Sbjct: 698 WKPEDIDYEKAMALISLPRDIGKHPESGKMISSGIGRYGPFLLHDGSYANLETIEDVFSV 757
Query: 1126 TLEKALEFLSGKDVRRCGR-PKGKP 1149
L +A+ ++ K + GR +G P
Sbjct: 758 GLNRAVTVIAEKANQAPGRGSRGTP 782
>gi|405381823|ref|ZP_11035646.1| DNA topoisomerase I, bacterial [Rhizobium sp. CF142]
gi|397321710|gb|EJJ26125.1| DNA topoisomerase I, bacterial [Rhizobium sp. CF142]
Length = 885
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 345/809 (42%), Positives = 487/809 (60%), Gaps = 38/809 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M+WEV SA+
Sbjct: 2 NVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDSASSKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH++++L ++ ++ V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSSDALFLATDPDREGEAISWHVLDLLNKKRVINGK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMADPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL SIG+ EA ++
Sbjct: 181 ESEIERFISEEYWNLSALLKTPRGDE-----FEARLVAANGKRLQPRSIGNGEEAGRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A++ V+++ + V++NP P + TSTLQQ A++KL FSA+ TM++AQKLYEGV +
Sbjct: 236 LLEGASY-VVESVEAKPVKRNPAPPFTTSTLQQAASSKLGFSASRTMQIAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA RS I E++G + PE+ R Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARSAIGEQFGERYLPEKA-RFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D ++LY LIW R +A QM A + + +I N +
Sbjct: 353 IRPTDFNRSPDRVRKFLDADQIRLYDLIWKRGIASQMASAEIERTTAEIIADNNGQKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEE--NDRHEAFAILNSLKTGDPLYLGEVELK 825
R+ S + F GF AAY D KE+ E +D + L + + L ++
Sbjct: 413 RAVGSVIRFDGFIAAYTD-------QKEDGEQSDDADDEDGRLPEINARENLAKQKINST 465
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PP RYSE SL+KK+EELGIGRPSTYA+TL L+DR+YVT+ R L P+ +GR+V+
Sbjct: 466 QHFTEPPPRYSEASLIKKMEELGIGRPSTYAATLATLRDRDYVTIDKRKLIPQAKGRLVT 525
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
AFL +F++ +Y FTAD+E +LD +SAG WK +L D+W F S + L + V
Sbjct: 526 AFLESFFTKYVEYDFTADLEEKLDRISAGELNWKQVLRDFWKDFFSQIEDTKELRVTNVL 585
Query: 946 KMLEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
L + +F P ++ R C VCG G L K+ ++GA F+GC+ +P CNY
Sbjct: 586 DSLNEALAPLVF---PKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNY-T 639
Query: 1001 KTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRA 1060
+ L ++ E ++EPK +G P + E++ L+SG +G Y+Q G+ + KR+
Sbjct: 640 RQLSSENGGE---AEGAALNEPKNLGTDPTTGEELTLRSGRFGPYIQRGDGKDA---KRS 693
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
S+ + I E A+ L+ P ++G HP+ G+ I L R G + H T A++
Sbjct: 694 SLPKGWKPEDIDYEKAMALISLPRDIGKHPESGKMISSGLGRYGPFLLHDGTYANLESIE 753
Query: 1121 KPNDVTLEKALEFLSGKDVRRCGRPKGKP 1149
V L +A+ ++ K + G +G P
Sbjct: 754 DVFSVGLNRAVTLIAEKQAKAPGGNRGTP 782
>gi|399036652|ref|ZP_10733658.1| DNA topoisomerase I, bacterial [Rhizobium sp. CF122]
gi|398065821|gb|EJL57437.1| DNA topoisomerase I, bacterial [Rhizobium sp. CF122]
Length = 883
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 341/795 (42%), Positives = 476/795 (59%), Gaps = 35/795 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M+WEV SA+
Sbjct: 2 NVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDSASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK I A+ +++L LA+DPDREGEAI+WH+++ML ++ L+ TV RVVF+ IT+ ++
Sbjct: 62 LKDIADAVKSSDSLFLATDPDREGEAISWHVLDMLNKKRVLNGK-TVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMADPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL SI + EA ++
Sbjct: 181 ESEIERFISEEYWNLSALLKTPRGDE-----FEARLVAANGKRLQARSIANGEEAGKLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A + V+ + V++NP P+ TSTLQQ A++KL FSA+ TM++AQKLYEGV +
Sbjct: 236 LLEGATY-VVDTVEAKPVKRNPGPPFTTSTLQQAASSKLGFSASRTMQIAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R I +++G + PE+ R Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARKAIVDQFGQRYMPEKA-RVYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D +KLY LIW R +A QM A + + +I N E
Sbjct: 353 IRPTDFNRSPDRVRQFLDADQIKLYDLIWKRGIASQMASAEIERTTAEITADNNGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDEDGRLPEINARENLAKQKINSTQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TL LQDR YVT+ R L P+ +GR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLATLQDREYVTIDKRKLIPQAKGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTAD+E +LD +SAG WK +L D+W F S + L + V
Sbjct: 527 LESFFTKYVEYDFTADLEEKLDRISAGELNWKQVLRDFWKDFFSQIEDTKELRVTNVLDS 586
Query: 948 LEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
L + +F P ++ R C VCG G L K+ ++GA F+GC+ +P CNY +
Sbjct: 587 LNEALAPLVF---PKREDGGDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNYTRQL 641
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
E + ++EPK +G P + E++ L+SG +G Y+Q G+ G KR+S+
Sbjct: 642 ----SSEGGSEAEGVALNEPKNLGADPVTGEELTLRSGRFGPYIQRGD---GKDAKRSSL 694
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+ I E A+ L+ P ++G HP+ G+ I + R G + H A++
Sbjct: 695 PKGWKPEDIDYEKAMALISLPRDIGKHPETGKMISSGIGRYGPFLLHDGGYANLESVEDV 754
Query: 1123 NDVTLEKALEFLSGK 1137
+ L +A+ ++ K
Sbjct: 755 FSIGLNRAVTVIAEK 769
>gi|238651065|ref|YP_002916922.1| DNA topoisomerase I [Rickettsia peacockii str. Rustic]
gi|238625163|gb|ACR47869.1| DNA topoisomerase I [Rickettsia peacockii str. Rustic]
Length = 776
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 326/784 (41%), Positives = 478/784 (60%), Gaps = 23/784 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKTGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGESISWHVAEVIKEKNQVKSDDFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LT ++L + SI + AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTQVNDQKLEKFSIINEKNAKDLTKK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V K K+ R+ P+ITS+LQQ+A KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQKFHVDKIEKKQQKRQPQPPFITSSLQQEAVRKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKSYGDKYLP-TSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L LD+D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLDKDYYKLYELIWKRTIACQMENVIMDLVVANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK +PL EV QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESMDDEAEEENKMLPPLKEQEPLKTKEVIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F+ +I ++ ++K
Sbjct: 526 FKKYVEYDFTAGLENELDAIAAGTLEWKAALNNFWSGFNHNIESVNEQNITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKICPSCHTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ + +E K++G E + LK GPYG Y+QLG+ PKR+ V + +
Sbjct: 642 NEGEPAAMPNENKVLGTDKDGVE-IYLKKGPYGPYIQLGKQEGKVKPKRSPVPASLNQND 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITL+ AL+LL P+ +G H + IM+ + G +++ SV K +++L+ A
Sbjct: 701 ITLDIALKLLSLPLKIGIHKDSDEEIMIGYGKFGPYIKYMGKFISVQKKYDFLNLSLDDA 760
Query: 1131 LEFL 1134
++ +
Sbjct: 761 MKLI 764
>gi|398377976|ref|ZP_10536145.1| DNA topoisomerase I, bacterial [Rhizobium sp. AP16]
gi|397725903|gb|EJK86347.1| DNA topoisomerase I, bacterial [Rhizobium sp. AP16]
Length = 888
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 342/809 (42%), Positives = 486/809 (60%), Gaps = 39/809 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y VL S+GHVRDL A+ GSV PD DF M+WEV A+
Sbjct: 2 NVVVVESPAKAKTINKYLGPGYTVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDPASQKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH++++L ++ ++ V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSSDGLFLATDPDREGEAISWHVLDLLNKKRVINGK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMADPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +IG+ EA +++
Sbjct: 181 ESEIERFISEEYWNLSAILKTPRGDE-----FEARLVAANGKRLQPRAIGNGEEAGNLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A++ V+ + V++NP+P + TSTLQQ A++KL FSA+ TM++AQKLYEGV +
Sbjct: 236 LLEGASY-VVDTVEAKPVKRNPSPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R+ I +++G+ + PE+ R Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARTAIADQFGNRYLPEKA-RLYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D L+LY L+W R +A QM A + + V+I N +
Sbjct: 353 IRPTDFDRTPDRVRKYLDADQLRLYDLVWKRGIASQMASAEIERTTVEILADNGGQKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEE--NDRHEAFAILNSLKTGDPLYLGEVELK 825
R+ S + F GF AAY D KE+ E +D + L + + L ++
Sbjct: 413 RAVGSVIRFDGFIAAYTD-------QKEDGEQSDDADDEDGRLPEINARENLAKQKINST 465
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PP RYSE SL+KK+EELGIGRPSTYA+TL L+DR+YVT+ R L P+ +GR+V+
Sbjct: 466 QHFTEPPPRYSEASLIKKMEELGIGRPSTYAATLATLRDRDYVTIDKRKLLPQAKGRLVT 525
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
AFL +F++ +Y FTAD+E +LD +SAG WK +L D+W F + + L + V
Sbjct: 526 AFLESFFTKYVEYDFTADLEEKLDRISAGELNWKDVLRDFWRDFFAQIEDTKELRVTNVL 585
Query: 946 KMLEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
L + +F P ++ R C VCG G L K+ ++GA F+GC+ +P CNY
Sbjct: 586 DALNEALAPLVF---PKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNYTR 640
Query: 1001 KTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRA 1060
+ E T + ++EPK +G P + E++ L+SG +G Y+Q G+ G KRA
Sbjct: 641 QL----SSEGGTEAEASGLNEPKALGTDPVTNEELTLRSGRFGPYIQRGD---GKEAKRA 693
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
S+ + I E A+ L+ P ++G HP+ G+ I + R G + H + A++
Sbjct: 694 SLPKGWKPEDIDYEKAMALISLPRDIGKHPESGKMISSGIGRYGPFLLHDGSYANLETVE 753
Query: 1121 KPNDVTLEKALEFLSGKDVRRCGRPKGKP 1149
V L +A+ L+ K + G +G P
Sbjct: 754 DVFTVGLNRAVTVLAEKQ-SKAGGGRGTP 781
>gi|57239068|ref|YP_180204.1| DNA topoisomerase I [Ehrlichia ruminantium str. Welgevonden]
gi|58579011|ref|YP_197223.1| DNA topoisomerase I [Ehrlichia ruminantium str. Welgevonden]
gi|57161147|emb|CAH58060.1| DNA topoisomerase I [Ehrlichia ruminantium str. Welgevonden]
gi|58417637|emb|CAI26841.1| DNA topoisomerase I [Ehrlichia ruminantium str. Welgevonden]
Length = 819
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 340/789 (43%), Positives = 479/789 (60%), Gaps = 39/789 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+++VES +KAK I YLG Y+V+ S+GH+RD A+SGSV PD DF+M +E+ + + +
Sbjct: 2 SLIIVESPSKAKTIGKYLGSKYKVVASFGHIRDFPAKSGSVDPDKDFAMTYEIIAKSEKY 61
Query: 411 L-KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ K ++VA + + LA+DPDREGEAIAWHIVE+L++++A++ NI + R+VF+EIT+ +
Sbjct: 62 VSKLVQVANKETKEIYLATDPDREGEAIAWHIVEVLREKNAINNNIVINRMVFNEITKNA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I +++ R I+ +LV A ARRALDYL+GF +SPLLWRKLPG +SAGRVQS AL LICD
Sbjct: 122 ILASVKNPRNINMDLVYAQQARRALDYLVGFTLSPLLWRKLPGSKSAGRVQSVALRLICD 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI++F QEYW +EA L E F A+L + +L + I + +A +
Sbjct: 182 RENEIEKFITQEYWDIEAKLQNVEGR-----EFSAYLKCYSGNKLEKFDIKNEEDANRLS 236
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I ++ V K+ R P+ITS+LQQ+A+ KL FSA TM +AQKLYEGV +
Sbjct: 237 AEIRQRSYSVSSVEKKHTKRNPYPPFITSSLQQEASTKLGFSAKSTMLIAQKLYEGVDI- 295
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG++ISDEA + IRS+I +G + P E PRKY KK+KNAQEAHEA
Sbjct: 296 GGEIVGLITYMRTDGVYISDEAVEHIRSVISSMFGKEYLP-ESPRKYVKKIKNAQEAHEA 354
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT+I P L L ++ LKLY LIW RT+A QM A + Q+ V++ + D ++ R+
Sbjct: 355 IRPTNITITPDSLVSYLTQEQLKLYDLIWKRTVASQMNSAVLDQVIVELSSLDGIVILRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S + F GF Y +D +IL L D L +V QH T
Sbjct: 415 LGSSLSFDGFYKVY--------------GHDDDSKNSILPLLNENDHCPLNDVIPNQHFT 460
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
PPARYSE SLVKK+EE+GIGRPSTYAS + VLQDR YV + + +P RGR+V+ FL
Sbjct: 461 NPPARYSEASLVKKMEEIGIGRPSTYASIISVLQDRQYVVLNQKRFFPTERGRVVNIFLV 520
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
++F+ +Y FTAD+E +LD +S G WK +L +W F + L Q+ +
Sbjct: 521 NFFNRYVEYDFTADLEEKLDLISNGKIGWKEVLHQFWFLFIDNVNSVKKLEFTQILNAIS 580
Query: 950 KTFGDSLFAS-LPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
+F S + D+ CPVC GTL +S+ G F+GC+Q+P C Y
Sbjct: 581 SEMESHIFPSDVSEVDKMCPVCNVGTLSLNISK--NGVFLGCSQYPECKYTKNI------ 632
Query: 1009 EEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKD 1067
D+ NT V + P+++G AS E + LK GPYG Y+Q+G + G KRA++ D
Sbjct: 633 -GDSTVDNTEVSQYPRVLGSDAASGEDIYLKKGPYGIYLQIGSGKDG---KRATLPKDID 688
Query: 1068 VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN--DV 1125
++ + LE A ++L P++LG +P I L L + G + + S+ K + N D+
Sbjct: 689 LNLLDLEMAKKILSLPISLGMYPDTNSEIKLGLGKFGAYIFYEGKYFSI-KKFEGNFLDI 747
Query: 1126 TLEKALEFL 1134
TLE A+ +
Sbjct: 748 TLENAIAII 756
>gi|402703770|ref|ZP_10851749.1| DNA topoisomerase I [Rickettsia helvetica C9P9]
Length = 774
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 322/784 (41%), Positives = 480/784 (61%), Gaps = 23/784 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGESISWHVAEVIKEKNKVKSDNFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + +AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNNNNE-----LFTAKLTHINDQKLEKFSIINEKDAKDLTEK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V + K+ R+ P+ITS+LQQ+AA KL FSA T+++AQKLYEGV +
Sbjct: 238 LKSQKFHVDRIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTIQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKSYGDKYLP-TNPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L L++D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLEKDYYKLYELIWKRTIACQMENVIMNLVVANLASDNKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK + L EV QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESVDDEAEEENKMLPPLKEQEQLKTKEVIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEE G+GRPSTYAS L VLQDR YV+++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEEFGLGRPSTYASILSVLQDRKYVSLEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 526 FKKYVEYDFTAGLENELDEIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKICPSCKTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ + + +E K++G E + LK GPYG Y+Q GE PKR+ + +
Sbjct: 642 NEGEPSATPNENKVLGTDKDGIE-IYLKKGPYGPYIQHGEQEGKVKPKRSPIPASLNQSD 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITL+ AL+LL P+ +G H + IM+ + G +++ S+PK +++L+ A
Sbjct: 701 ITLDIALKLLSLPLKIGIHKDSSEEIMIGYGKFGPYIKYTGKFISIPKKYDFLNLSLDDA 760
Query: 1131 LEFL 1134
++ +
Sbjct: 761 MQLI 764
>gi|222085613|ref|YP_002544143.1| DNA topoisomerase I [Agrobacterium radiobacter K84]
gi|221723061|gb|ACM26217.1| DNA topoisomerase I [Agrobacterium radiobacter K84]
Length = 889
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 342/809 (42%), Positives = 486/809 (60%), Gaps = 39/809 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y VL S+GHVRDL A+ GSV PD DF M+WEV A+
Sbjct: 3 NVVVVESPAKAKTINKYLGPGYTVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDPASQKR 62
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH++++L ++ ++ V RVVF+ IT+ ++
Sbjct: 63 MKDIADAVKSSDGLFLATDPDREGEAISWHVLDLLNKKRVINGK-PVKRVVFNAITKKAV 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 122 LDAMADPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +IG+ EA +++
Sbjct: 182 ESEIERFISEEYWNLSAILKTPRGDE-----FEARLVAANGKRLQPRAIGNGEEAGNLKA 236
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A++ V+ + V++NP+P + TSTLQQ A++KL FSA+ TM++AQKLYEGV +
Sbjct: 237 LLEGASY-VVDTVEAKPVKRNPSPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVDI- 294
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R+ I +++G+ + PE+ R Y K KNAQEAHEA
Sbjct: 295 GGETVGLITYMRTDGVQMAPEAIDAARTAIADQFGNRYLPEKA-RLYSTKAKNAQEAHEA 353
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D L+LY L+W R +A QM A + + V+I N +
Sbjct: 354 IRPTDFDRTPDRVRKYLDADQLRLYDLVWKRGIASQMASAEIERTTVEILADNGGQKAGL 413
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEE--NDRHEAFAILNSLKTGDPLYLGEVELK 825
R+ S + F GF AAY D KE+ E +D + L + + L ++
Sbjct: 414 RAVGSVIRFDGFIAAYTD-------QKEDGEQSDDADDEDGRLPEINARENLAKQKINST 466
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PP RYSE SL+KK+EELGIGRPSTYA+TL L+DR+YVT+ R L P+ +GR+V+
Sbjct: 467 QHFTEPPPRYSEASLIKKMEELGIGRPSTYAATLATLRDRDYVTIDKRKLLPQAKGRLVT 526
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
AFL +F++ +Y FTAD+E +LD +SAG WK +L D+W F + + L + V
Sbjct: 527 AFLESFFTKYVEYDFTADLEEKLDRISAGELNWKDVLRDFWRDFFAQIEDTKELRVTNVL 586
Query: 946 KMLEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
L + +F P ++ R C VCG G L K+ ++GA F+GC+ +P CNY
Sbjct: 587 DALNEALAPLVF---PKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNYTR 641
Query: 1001 KTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRA 1060
+ E T + ++EPK +G P + E++ L+SG +G Y+Q G+ G KRA
Sbjct: 642 QL----SSEGGTEAEASGLNEPKALGTDPVTNEELTLRSGRFGPYIQRGD---GKEAKRA 694
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
S+ + I E A+ L+ P ++G HP+ G+ I + R G + H + A++
Sbjct: 695 SLPKGWKPEDIDYEKAMALISLPRDIGKHPESGKMISSGIGRYGPFLLHDGSYANLETVE 754
Query: 1121 KPNDVTLEKALEFLSGKDVRRCGRPKGKP 1149
V L +A+ L+ K + G +G P
Sbjct: 755 DVFTVGLNRAVTVLAEKQ-SKAGGGRGTP 782
>gi|209548898|ref|YP_002280815.1| DNA topoisomerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209534654|gb|ACI54589.1| DNA topoisomerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 884
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 340/805 (42%), Positives = 483/805 (60%), Gaps = 30/805 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M+WEV A+
Sbjct: 2 NVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDGASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH+++ML ++ L+ V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSSDGLFLATDPDREGEAISWHVLDMLNKKRVLNGK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMADPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +IG+ +A ++
Sbjct: 181 ESEIERFISEEYWNISALLKTPRGDE-----FEARLVSANGKRLQPRAIGNGEDAGRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++ A++ V+ + V++NP P+ TSTLQQ A++ L FSA+ TM++AQKLYEGV +
Sbjct: 236 LLDGASY-VVDTVEAKPVKRNPGPPFTTSTLQQAASSNLGFSASRTMQIAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA RS I +++G + PE+ R Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARSAIVDQFGERYMPEKA-RFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D ++LY LIW R +A QM A + + +I N E
Sbjct: 353 IRPTDFYRSPDRVRQFLDADQIRLYDLIWKRGIASQMASAEIERTTAEITADNKGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDEDGRLPEINARETLAKQKINSTQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TL L+DR+YVT+ R L P+ +GR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLATLRDRDYVTIDKRKLIPQAKGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTAD+E +LD +SAG WK +L D+W F + + L + V
Sbjct: 527 LESFFTKYVEYDFTADLEEKLDRISAGELNWKQVLRDFWKDFFAQIEDTKELRVTNVLDS 586
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L + +F + R C VCG G L K+ ++GA F+GC+ +P CNY +
Sbjct: 587 LNEALAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNYTRQLSSE 644
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+ E D ++EPK +G P + E++ L+SG +G Y+Q G+ G KRAS+
Sbjct: 645 NGGEAD----GAAINEPKNLGTDPTTGEELTLRSGRFGPYIQRGD---GKEAKRASLPKG 697
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ I E A+ L+ P ++G HP+ G+ I + R G + H + A++ V
Sbjct: 698 WKPEDIDYEKAMALISLPRDIGKHPESGKMISSGIGRYGPFLLHDGSYANLETIEDVFSV 757
Query: 1126 TLEKALEFLSGKDVRRCGR-PKGKP 1149
L +A+ ++ K + GR +G P
Sbjct: 758 GLNRAVTVIAEKANQAPGRGSRGTP 782
>gi|58617070|ref|YP_196269.1| DNA topoisomerase I [Ehrlichia ruminantium str. Gardel]
gi|58416682|emb|CAI27795.1| DNA topoisomerase I [Ehrlichia ruminantium str. Gardel]
Length = 819
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 340/789 (43%), Positives = 479/789 (60%), Gaps = 39/789 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+++VES +KAK I YLG Y+V+ S+GH+RD A+SGSV PD DF+M +E+ + + +
Sbjct: 2 SLIIVESPSKAKTIGKYLGSKYKVVASFGHIRDFPAKSGSVDPDKDFAMTYEIIAKSEKY 61
Query: 411 L-KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ K ++VA + + LA+DPDREGEAIAWHIVE+L++++A++ NI + R+VF+EIT+ +
Sbjct: 62 VSKLVQVANKETKEIYLATDPDREGEAIAWHIVEVLREKNAINNNIVINRMVFNEITKNA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I +++ R I+ +LV A ARRALDYL+GF +SPLLWRKLPG +SAGRVQS AL LICD
Sbjct: 122 ILASVKNPRNINMDLVYAQQARRALDYLVGFTLSPLLWRKLPGSKSAGRVQSVALRLICD 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI++F QEYW +EA L E F A+L + +L + I + +A +
Sbjct: 182 RENEIEKFITQEYWDIEAKLQNVEGR-----EFSAYLKCYSGNKLEKFDIKNEEDANRLS 236
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I ++ V K+ R P+ITS+LQQ+A+ KL FSA TM +AQKLYEGV +
Sbjct: 237 AEIRQRSYSVSSVEKKHTKRNPYPPFITSSLQQEASTKLGFSAKSTMLIAQKLYEGVDI- 295
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG++ISDEA + IRS+I +G + P E PRKY KK+KNAQEAHEA
Sbjct: 296 GGEIVGLITYMRTDGVYISDEAVEHIRSVISSMFGKEYLP-ESPRKYVKKIKNAQEAHEA 354
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT+I P L L ++ LKLY LIW RT+A QM A + Q+ V++ + D ++ R+
Sbjct: 355 IRPTNITITPDSLVSYLTQEQLKLYDLIWKRTVASQMNSAVLDQVIVELSSLDGIVILRA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S + F GF Y +D +IL L D L +V QH T
Sbjct: 415 LGSSLSFDGFYKVY--------------GHDDDSKNSILPLLNENDHCPLNDVIPNQHFT 460
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
PPARYSE SLVKK+EE+GIGRPSTYAS + VLQDR YV + + +P RGR+V+ FL
Sbjct: 461 NPPARYSEASLVKKMEEIGIGRPSTYASIISVLQDRQYVVLNQKRFFPTERGRVVNIFLV 520
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
++F+ +Y FTAD+E +LD +S G WK +L +W F + L Q+ +
Sbjct: 521 NFFNRYVEYDFTADLEEKLDLISNGKIGWKEVLHQFWFLFIDNVNSVKKLEFTQILNAIS 580
Query: 950 KTFGDSLFAS-LPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
+F S + D+ CPVC GTL +S+ G F+GC+Q+P C Y
Sbjct: 581 SEMESHIFPSDVSEVDKMCPVCNVGTLSLNISK--NGVFLGCSQYPECKYTKNI------ 632
Query: 1009 EEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKD 1067
D+ NT V + P+++G AS E + LK GPYG Y+Q+G + G KRA++ D
Sbjct: 633 -GDSTVDNTEVSQYPRVLGSDAASGEDIYLKKGPYGIYLQIGGGKDG---KRATLPKDID 688
Query: 1068 VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN--DV 1125
++ + LE A ++L P++LG +P I L L + G + + S+ K + N D+
Sbjct: 689 LNLLDLEMAKKILSLPISLGMYPDTNSEIKLGLGKFGAYIFYEGKYFSI-KKFEGNFLDI 747
Query: 1126 TLEKALEFL 1134
TLE A+ +
Sbjct: 748 TLENAIAII 756
>gi|165933029|ref|YP_001649818.1| DNA topoisomerase I [Rickettsia rickettsii str. Iowa]
gi|378722484|ref|YP_005287370.1| DNA topoisomerase I [Rickettsia rickettsii str. Arizona]
gi|378723840|ref|YP_005288724.1| DNA topoisomerase I [Rickettsia rickettsii str. Hauke]
gi|379017629|ref|YP_005293864.1| DNA topoisomerase I [Rickettsia rickettsii str. Hino]
gi|165908116|gb|ABY72412.1| DNA topoisomerase I [Rickettsia rickettsii str. Iowa]
gi|376327508|gb|AFB24746.1| DNA topoisomerase I [Rickettsia rickettsii str. Arizona]
gi|376330195|gb|AFB27431.1| DNA topoisomerase I [Rickettsia rickettsii str. Hino]
gi|376332855|gb|AFB30088.1| DNA topoisomerase I [Rickettsia rickettsii str. Hauke]
Length = 776
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 326/784 (41%), Positives = 479/784 (61%), Gaps = 23/784 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I + A+ + LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKDATKADAVYLATDPDREGESISWHVAEVIKEKNQVKSDDFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LT ++L + SI + AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTQVNDQKLEKFSIINEKNAKDLTKK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQKFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKSYGDKYLP-TSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L LD+D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLDKDYYKLYELIWKRTIACQMENVIMDLVVANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK +PL V QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESMDDEAEEENKMLPPLKEQEPLKTKAVIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 526 FKKYVEYDFTAGLENELDAIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKICPSCHTGKLSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ + +E K++G E + LK GPYG Y+QLG+ PKR+ V + +
Sbjct: 642 NEGEPAAMPNENKVLGTDKDGVE-IYLKKGPYGPYIQLGKQEGKVKPKRSPVPASLNQND 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITL+ AL+LL P+ +G H + I++ + G +++ SV K +++L+ A
Sbjct: 701 ITLDIALKLLSLPLKIGIHKDSDEEIIIGYGKFGPYIKYMGKFISVQKKYDFLNLSLDDA 760
Query: 1131 LEFL 1134
++ +
Sbjct: 761 MKLI 764
>gi|383501883|ref|YP_005415242.1| DNA topoisomerase I [Rickettsia australis str. Cutlack]
gi|378932894|gb|AFC71399.1| DNA topoisomerase I [Rickettsia australis str. Cutlack]
Length = 776
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 333/785 (42%), Positives = 474/785 (60%), Gaps = 25/785 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M + + A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYGISDKASKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGE+I+WH+ E++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGESISWHVAEVIKETTKVKSDDFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
+I+ FK +EYW + + + F A LTH ++L + SI + +AKD+ +K
Sbjct: 183 DKIERFKSEEYWDISLKIQNSNNE-----LFTAKLTHVNDQKLEKFSIINEKDAKDLTEK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V K K R P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQKFHVDKIEKTQQKRAPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDTSYGDKYLP-SSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L L++D KLY LIW RT+ACQM+ + + + + ++ + +++
Sbjct: 356 PTNITYTPDNLKEQLEKDYYKLYELIWKRTIACQMENVIMDVVVASLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF Y E VD A EEN +L LK +PL + QH T+
Sbjct: 416 STITFDGFYKIYRESVDDEA-----EEEN------KMLPPLKEQEPLKTKAIIPSQHFTE 464
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKKLEELGIGRPSTYAS L VLQDR YVT++ + PE GR+V+ FL
Sbjct: 465 PPPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVTLEKKRFIPEELGRLVTVFLVG 524
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 525 FFRKYVEYDFTASLENELDEIAAGKLEWKASLNNFWSGFNHNIESVNEQKITEIISYVQK 584
Query: 951 TFGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDE 1009
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+D+
Sbjct: 585 ALDYHLFGE--NKESKVCPSCKTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNN 640
Query: 1010 EDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVD 1069
E+ + + E K++G E + LK GPYG Y+Q GE PKR+ V +
Sbjct: 641 ENEGELSAIPHENKILGTDKDGIE-IYLKKGPYGPYIQHGEQEGKVKPKRSPVPASLNQH 699
Query: 1070 SITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEK 1129
ITLE AL+LL P+ +G H G+ IM+ + G +++ S+PK +++L+
Sbjct: 700 DITLEMALKLLSLPLKIGIHKDSGEEIMIGYGKFGPYIKYMSKFISIPKKYDFLNLSLDD 759
Query: 1130 ALEFL 1134
A++ +
Sbjct: 760 AMKLI 764
>gi|15604194|ref|NP_220709.1| DNA topoisomerase I [Rickettsia prowazekii str. Madrid E]
gi|383487742|ref|YP_005405421.1| DNA topoisomerase I [Rickettsia prowazekii str. Chernikova]
gi|383488589|ref|YP_005406267.1| DNA topoisomerase I [Rickettsia prowazekii str. Katsinyian]
gi|383489430|ref|YP_005407107.1| DNA topoisomerase I [Rickettsia prowazekii str. Dachau]
gi|383499567|ref|YP_005412928.1| DNA topoisomerase I [Rickettsia prowazekii str. BuV67-CWPP]
gi|386082165|ref|YP_005998742.1| DNA topoisomerase I [Rickettsia prowazekii str. Rp22]
gi|6686044|sp|Q9ZDK2.1|TOP1_RICPR RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase I;
AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName: Full=Untwisting
enzyme
gi|3860886|emb|CAA14786.1| DNA TOPOISOMERASE I (topA) [Rickettsia prowazekii str. Madrid E]
gi|292571929|gb|ADE29844.1| DNA topoisomerase I [Rickettsia prowazekii str. Rp22]
gi|380760621|gb|AFE49143.1| DNA topoisomerase I [Rickettsia prowazekii str. Chernikova]
gi|380761468|gb|AFE49989.1| DNA topoisomerase I [Rickettsia prowazekii str. Katsinyian]
gi|380762313|gb|AFE50833.1| DNA topoisomerase I [Rickettsia prowazekii str. BuV67-CWPP]
gi|380763153|gb|AFE51672.1| DNA topoisomerase I [Rickettsia prowazekii str. Dachau]
Length = 776
Score = 614 bits (1583), Expect = e-172, Method: Compositional matrix adjust.
Identities = 332/783 (42%), Positives = 480/783 (61%), Gaps = 21/783 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD +F M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDKNFLMEYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AE + LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKEARKAEVVYLATDPDREGESISWHVAEVIKEKNKVESDDFFKRVAFNEITKKAIM 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LICDRE
Sbjct: 123 NAVANPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICDRE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + K ++ + D F+ A LTH ++L + SI + EAKD+ QK
Sbjct: 183 DEIERFKSEEYWDISL---KMQNSNNDLFT--AKLTHVNDQKLKKFSIINEKEAKDLTQK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ F V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKLQKFYVEKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG+ + P + PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKNYGNQYLPIK-PRIYQSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L L++D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKQKLEKDYYKLYELIWHRTIACQMENVIMDLVIANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK + + EV +H T+P
Sbjct: 416 SIIAFDGFYKV----------YRESLDDEDEEDNKMLPPLKEQEHIKTKEVIPNKHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++W F+ I ++ L+K
Sbjct: 526 FKKYVEYDFTAGLENELDEIAAGKLEWKTALNNFWRGFNHNIESVNEQKITEIINYLQKA 585
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEED 1011
LF + + CP C G L K+ +FGA F+ C+ +P C + + G+D+ ED
Sbjct: 586 LDYHLFGE-DKESKVCPSCKTGQLSLKLGKFGA--FLACSNYPECTFKKSIVSGNDNNED 642
Query: 1012 TLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSI 1071
+T +++ K++G E + LK GPYG Y+QLGE PKR V I
Sbjct: 643 EGDPSTILNDNKILGTDQDGVE-IYLKKGPYGPYIQLGEQCGKVKPKRTPVPANLKQSEI 701
Query: 1072 TLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKAL 1131
TLE AL+LL P+ +G H G+ I++ ++ G +++ SVPK +++L A+
Sbjct: 702 TLEIALKLLNLPLKIGIHKDSGEEIIIGYSKFGPYIKYMCKFISVPKKYDFLNLSLNDAM 761
Query: 1132 EFL 1134
+ +
Sbjct: 762 KLI 764
>gi|383483788|ref|YP_005392701.1| DNA topoisomerase I [Rickettsia parkeri str. Portsmouth]
gi|378936142|gb|AFC74642.1| DNA topoisomerase I [Rickettsia parkeri str. Portsmouth]
Length = 776
Score = 614 bits (1583), Expect = e-172, Method: Compositional matrix adjust.
Identities = 325/784 (41%), Positives = 478/784 (60%), Gaps = 23/784 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGE+I+WH+ E++++++ + + R+ F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGESISWHVAEVIKEKNQVKSDDFFKRIAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTHVNDQKLEKFSIINEKNAKDLTKK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V K K+ R+ P+ITS+LQQ+AA KL F+A TM++AQKLYEGV +
Sbjct: 238 LKSQKFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFNAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKSYGDKYLP-TSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L LD+D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLDKDYYKLYELIWKRTIACQMENVIMDLVVANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L L + L EV QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESMDDEAEEENKMLPPLTEQEQLKTKEVIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 526 FKKYVEYDFTAGLENELDAIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKICPSCNTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ + +E K++G E + LK GPYG Y+QLG+ PKR+ V + +
Sbjct: 642 NEGEPAAMPNENKVLGTDKDGVE-IYLKKGPYGPYIQLGKQEGKVKPKRSPVPASLNQND 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITL+ AL+LL P+ +G H + IM+ + G +++ SV K +++L+ A
Sbjct: 701 ITLDIALKLLSLPLKIGIHKDSDEEIMIGYGKFGPYIKYMDQFISVQKKYDFLNLSLDDA 760
Query: 1131 LEFL 1134
++ +
Sbjct: 761 MKLI 764
>gi|241204122|ref|YP_002975218.1| DNA topoisomerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240858012|gb|ACS55679.1| DNA topoisomerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 884
Score = 614 bits (1583), Expect = e-172, Method: Compositional matrix adjust.
Identities = 341/805 (42%), Positives = 485/805 (60%), Gaps = 30/805 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M+WEV SA+
Sbjct: 2 NVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDSASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ A+ L LA+DPDREGEAI+WH+++ML ++ L+ V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSADGLFLATDPDREGEAISWHVLDMLNKKRVLNGK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMADPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +IG+ +A ++
Sbjct: 181 ESEIERFISEEYWNISALLKTPRGDE-----FEARLVSANGKRLQPRAIGNGEDAGRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A++ V+ + + V++NP P+ TSTLQQ A++ L FSA+ TM++AQKLYEGV +
Sbjct: 236 LLEGASY-VVDSVEAKPVKRNPGPPFTTSTLQQAASSNLGFSASRTMQVAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA RS I +++G + PE+ PR Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARSAIVDQFGERYMPEK-PRFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D ++LY LIW R +A QM A + + +I N E
Sbjct: 353 IRPTDFDRSPDRVRKFLDADQIRLYELIWKRGIASQMASAEIERTTAEITADNKGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDEDGRLPEIIAREALAKQKINSTQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR+YVT+ R L P+ +GR+V+AF
Sbjct: 467 FTEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDRDYVTIDKRKLIPQAKGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTAD+E +LD +SAG WK +L D+W F + + L + V
Sbjct: 527 LESFFTKYVEYDFTADLEEKLDRISAGELNWKQVLRDFWKDFFAQIEDTKELRVTNVLDS 586
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L + +F + R C VCG G L K+ ++GA F+GC+ +P CNY +
Sbjct: 587 LNEALAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPDCNYTRQLSSE 644
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+ + D ++EPK +G P + E++ L+SG +G Y+Q G+ G KRAS+
Sbjct: 645 NGGDAD----GAALNEPKNLGTDPTTGEELTLRSGRFGPYIQRGD---GKEAKRASLPKG 697
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ I E A+ L+ P ++G HP+ G+ I + R G + H + A++ V
Sbjct: 698 WKPEDIDYEKAMALISLPRDIGKHPESGKMISSGIGRYGPFLLHDGSYANLETVEDVFSV 757
Query: 1126 TLEKALEFLSGKDVRRCGR-PKGKP 1149
L +A+ ++ K + GR +G P
Sbjct: 758 GLNRAVTVIAEKANQAPGRGARGTP 782
>gi|157828321|ref|YP_001494563.1| DNA topoisomerase I [Rickettsia rickettsii str. 'Sheila Smith']
gi|378721130|ref|YP_005286017.1| DNA topoisomerase I [Rickettsia rickettsii str. Colombia]
gi|379016607|ref|YP_005292842.1| DNA topoisomerase I [Rickettsia rickettsii str. Brazil]
gi|379019208|ref|YP_005295442.1| DNA topoisomerase I [Rickettsia rickettsii str. Hlp#2]
gi|157800802|gb|ABV76055.1| DNA topoisomerase I [Rickettsia rickettsii str. 'Sheila Smith']
gi|376325131|gb|AFB22371.1| DNA topoisomerase I [Rickettsia rickettsii str. Brazil]
gi|376326154|gb|AFB23393.1| DNA topoisomerase I [Rickettsia rickettsii str. Colombia]
gi|376331788|gb|AFB29022.1| DNA topoisomerase I [Rickettsia rickettsii str. Hlp#2]
Length = 776
Score = 614 bits (1583), Expect = e-172, Method: Compositional matrix adjust.
Identities = 326/784 (41%), Positives = 479/784 (61%), Gaps = 23/784 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I + A+ + LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKDATKADAVYLATDPDREGESISWHVAEVIKEKNQVKSDDFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LT ++L + SI + AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTQVNDQKLEKFSIINEKNAKDLTKK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQKFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKSYGDKYLP-TSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L LD+D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLDKDYYKLYELIWKRTIACQMENVIMDLVVANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK +PL V QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESMDDEAEEENKMLPPLKEQEPLKTKAVIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 526 FKKYVEYDFTAGLENELDAIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKICPSCHTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ + +E K++G E + LK GPYG Y+QLG+ PKR+ V + +
Sbjct: 642 NEGEPAAMPNENKVLGTDKDGVE-IYLKKGPYGPYIQLGKQEGKVKPKRSPVPASLNQND 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITL+ AL+LL P+ +G H + I++ + G +++ SV K +++L+ A
Sbjct: 701 ITLDIALKLLSLPLKIGIHKDSDEEIIIGYGKFGPYIKYMGKFISVQKKYDFLNLSLDDA 760
Query: 1131 LEFL 1134
++ +
Sbjct: 761 MKLI 764
>gi|378825614|ref|YP_005188346.1| putative DNA topoisomerase I [Sinorhizobium fredii HH103]
gi|365178666|emb|CCE95521.1| putative DNA topoisomerase I [Sinorhizobium fredii HH103]
Length = 887
Score = 614 bits (1583), Expect = e-172, Method: Compositional matrix adjust.
Identities = 337/795 (42%), Positives = 482/795 (60%), Gaps = 35/795 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES +KAK I YLG Y+VL S+GHVRDL A+ GSVRPD+DF M WEV A+
Sbjct: 4 NVVVVESPSKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVRPDEDFEMSWEVDGASAKR 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH++++L+++ + + V RVVF+ IT+ ++
Sbjct: 64 MKDIADAVKSSDGLFLATDPDREGEAISWHVLDLLKKKKVIGDK-PVKRVVFNAITKKAV 122
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID +LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 123 LDAMADPRDIDISLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 182
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL SIG+ +A ++
Sbjct: 183 EAEIERFVTEEYWNIVALLKTPRGDE-----FEARLVSADGKRLQPKSIGNGEDANRLKA 237
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++ A++ V+++ + V++NP P+ TSTLQQ A++KL FSA+ TM++AQKLYEGV +
Sbjct: 238 LLDGASY-VVESVEAKPVKRNPGPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVDV- 295
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R I ++G + PE+ PR Y K KNAQEAHEA
Sbjct: 296 GGETVGLITYMRTDGVQMAPEAIDAARRAIGSQFGPRYLPEK-PRFYSTKAKNAQEAHEA 354
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVF 767
IRPTD R P + +LD D LKLY LIW R +A QM A + + +I N +
Sbjct: 355 IRPTDFNRTPDQVRRVLDGDMLKLYDLIWKRGIASQMASAEIERTTAEIAADNGGKKAGL 414
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S + F GF AAY D+ + + +E+ R L + + L ++ QH
Sbjct: 415 RATGSVIRFDGFIAAYTDMKEDGEQADDGDEDGR------LPEINARENLAKQKINATQH 468
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE +L+KK+EELGIGRPSTYA+T+ L DR+YV + R L P+ +GR+V+AF
Sbjct: 469 FTEPPPRYSEATLIKKMEELGIGRPSTYAATISTLVDRDYVEIDKRKLMPQAKGRLVTAF 528
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F+ +Y FTA +E +LD +SAG WK +L ++W F S + L + V
Sbjct: 529 LESFFTRYVEYDFTASLEEKLDQISAGELNWKDVLREFWKDFFSQIEDTKELRVTNVLDA 588
Query: 948 LEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
L + +F P ++ R+C VCG G L K+ ++GA F+GC+ +P CNY +
Sbjct: 589 LNEELAPLVF---PKREDGGDPRTCQVCGTGKLSLKLGKYGA--FVGCSNYPDCNYTRQL 643
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
+ + + N EP+ +G P + E++ L+SG +G YVQ G+ G KRAS+
Sbjct: 644 SSDSNGDAEAAVSN----EPQSLGKDPHTGEEITLRSGRFGPYVQRGD---GKDAKRASL 696
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+I E A+ LL P ++G HP+ G+ I + R G V H T A++
Sbjct: 697 PKGWTPATIDHEKAIALLSLPRDIGKHPETGKMISTGIGRYGPFVLHDGTYANLESVEDV 756
Query: 1123 NDVTLEKALEFLSGK 1137
+ L +A+ L+ K
Sbjct: 757 FSIGLNRAVSALADK 771
>gi|300022162|ref|YP_003754773.1| DNA topoisomerase I [Hyphomicrobium denitrificans ATCC 51888]
gi|299523983|gb|ADJ22452.1| DNA topoisomerase I [Hyphomicrobium denitrificans ATCC 51888]
Length = 920
Score = 613 bits (1582), Expect = e-172, Method: Compositional matrix adjust.
Identities = 344/786 (43%), Positives = 465/786 (59%), Gaps = 42/786 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VV+VES KAK I YLG Y+V+ SYGHVRDL A+ GSV PD DF+M WEV S +
Sbjct: 2 NVVIVESAAKAKTINKYLGSGYKVIASYGHVRDLPAKDGSVEPDHDFAMQWEVDSKSQKI 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
++ I AL A+ LILA+DPDREGEAI+WHI+E+L + AL + V RV F+ IT+ SI
Sbjct: 62 MREIADALKNADKLILATDPDREGEAISWHILEILNNKKALKKGTEVERVAFNAITKQSI 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
AL+ R+ID LV+AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 122 LAALKEPRKIDEPLVEAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ FK EYWT+EA+L + T L + L +L I A I+
Sbjct: 182 EAEIEAFKTDEYWTIEALLTTSRGDDVKT-----RLVAIEGTALKKLDIKDEASATAIKA 236
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +F+V K++ R P+ TSTLQ DA+ KL FSA TM++AQ+LYEGV +
Sbjct: 237 ALEGRDFRVASIEKKAAKRNPYPPFTTSTLQMDASRKLGFSAKQTMQIAQRLYEGVDI-G 295
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I EA +IR +I YG + P R+Y K KNAQEAHEAI
Sbjct: 296 GETVGLITYMRTDGVQIVPEAVSQIRDVISAEYGKQYTP--FAREYKTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI---GNADESIVF 767
RPTD RR P + L++D LY LIW R +A QM PA + Q V+I G+ ++
Sbjct: 354 RPTDPRRKPDQVRKYLEKDQAALYDLIWKRAIASQMAPADMEQTAVEIEAKGSDGKNYGL 413
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRY-------KENEENDRHEAFAILNSLKTGDPLYLG 820
R++ S + F GF YE+ RY E E+ DR L +L GD L
Sbjct: 414 RANGSVLLFDGFLKVYEEGRDDRFRYIEKGKDDPEGEDEDRR-----LPALAEGDHLKDK 468
Query: 821 EVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFR 880
E+ QH TQPP R+SE +LVK++EELGIGRPSTYAST+ VL DR+YV ++ + L PE +
Sbjct: 469 EISADQHFTQPPPRFSEATLVKRMEELGIGRPSTYASTMAVLVDRDYVRIEKKRLVPEDK 528
Query: 881 GRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLH 940
GR+V AFL +F +Y FTA++E +LD +S +K +L D+W +F + + L
Sbjct: 529 GRLVIAFLESFFKRYVEYDFTAELEEKLDLISNNELAYKEVLRDFWRQFIASVGEIKDLR 588
Query: 941 IHQVEKMLEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVS-RFGAGYFIGCNQHP 994
+ V + L + G +F P+K R CP C +G L K+S ++GA FIGC +P
Sbjct: 589 VGDVLEALNEMLGPHVF---PDKGDGSDPRLCPKCNQGRLSLKISGKYGA--FIGCGNYP 643
Query: 995 RCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTG 1054
CNY + ++ E L + K++G++ V L++G +G Y+QLGE
Sbjct: 644 ECNYTRQLSQSANNGEAAL-------DGKVLGYNDDGI-AVALRTGRFGPYIQLGEATGD 695
Query: 1055 YLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIA 1114
PKR+S+ D ++ E A++LL P ++G HP +G I L R G + H A
Sbjct: 696 EKPKRSSIPKGIDAATLDFEKAMQLLSLPRDVGVHPTEGGMITASLGRFGPFILHEHDGA 755
Query: 1115 SVPKNM 1120
N+
Sbjct: 756 KTYVNL 761
>gi|379023084|ref|YP_005299745.1| DNA topoisomerase I [Rickettsia canadensis str. CA410]
gi|376324022|gb|AFB21263.1| DNA topoisomerase I [Rickettsia canadensis str. CA410]
Length = 777
Score = 613 bits (1582), Expect = e-172, Method: Compositional matrix adjust.
Identities = 329/786 (41%), Positives = 481/786 (61%), Gaps = 26/786 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F++ +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAIKYDISDKASKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGE+I+WH+ E++++++ + RV F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGESISWHVAEVIKEKNKVKAADFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH +++L + SI + +AKD+ +K
Sbjct: 183 DEIERFKAEEYWDISLKMQNSNNE-----LFTAKLTHINNQKLERFSITNKKDAKDLTKK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S NF + + K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQNFHIDQIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y VKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAVADIRKLIDKNYGDKYLP-SSPRIYKSTVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L L +D +LY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLAKDYYRLYELIWKRTIACQMENVIMDLVVANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF Y E VD A EEN +L LK + L E+ QH T+
Sbjct: 416 STIAFDGFYKVYRESVDDEA-----EEEN------KMLPLLKENEQLNTKEIIPNQHFTE 464
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKKLEELGIGRPSTYA+ L VLQDR YV++K + PE GR+V+ FL
Sbjct: 465 PPPRYSEASLVKKLEELGIGRPSTYATILSVLQDRKYVSLKKKRFMPEELGRLVTVFLVG 524
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 525 FFKKYVEYDFTAGLENELDEIAAGKLEWKSALSNFWSGFNHNIKSVNEQKITEIISYVQK 584
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG--DDD 1008
LF + ++CP C G L K+ +FGA F+ CN +P+C + + G +++
Sbjct: 585 ALDYHLFGE-NQESKACPSCKTGELSLKLGKFGA--FLACNNYPKCTFRKSIVSGNNNNE 641
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDV 1068
ED L NT DE K++G E + LK GPYG Y+Q GE KR+ V +
Sbjct: 642 NEDKLS-NTPNDENKVLGTDKDGIE-IYLKKGPYGPYIQRGEHEDKVKLKRSPVPASLNQ 699
Query: 1069 DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
ITL+ AL+LL P+ +G H + IM+ + G +++ S+PK +++L+
Sbjct: 700 SDITLDIALKLLSLPLKIGTHKDTHKEIMIGYGKFGPYIKYIGKFISIPKKYDFLNLSLD 759
Query: 1129 KALEFL 1134
+A++ +
Sbjct: 760 EAIQLI 765
>gi|383487165|ref|YP_005404845.1| DNA topoisomerase I [Rickettsia prowazekii str. GvV257]
gi|383500404|ref|YP_005413764.1| DNA topoisomerase I [Rickettsia prowazekii str. RpGvF24]
gi|380757530|gb|AFE52767.1| DNA topoisomerase I [Rickettsia prowazekii str. GvV257]
gi|380758101|gb|AFE53337.1| DNA topoisomerase I [Rickettsia prowazekii str. RpGvF24]
Length = 776
Score = 613 bits (1582), Expect = e-172, Method: Compositional matrix adjust.
Identities = 332/783 (42%), Positives = 481/783 (61%), Gaps = 21/783 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD +F M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDKNFLMEYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AE + LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKEARKAEVVYLATDPDREGESISWHVAEVIKEKNKVESDDFFKRVAFNEITKKAIM 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LICDRE
Sbjct: 123 NAVANPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICDRE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + K ++ + D F+ A LTH ++L + SI + EAKD+ QK
Sbjct: 183 DEIERFKSEEYWDISL---KMQNSNNDLFT--AKLTHVNDQKLKKFSIINEKEAKDLTQK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ F V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKLQKFYVEKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG+ + P + PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKNYGNQYLPIK-PRIYQSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L L++D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKQKLEKDYYKLYELIWHRTIACQMENVIMDLVIANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK + + EV +H T+P
Sbjct: 416 SIIAFDGFYKV----------YRESLDDEDEEDNKMLPPLKEQEHIKTKEVIPNKHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++W F+ I ++ L+K
Sbjct: 526 FKKYVEYDFTAGLENELDEIAAGKLEWKTALNNFWRGFNHNIESVNEQKITEIINYLQKA 585
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEED 1011
LF + + CP C G L K+ +FGA F+ C+ +P C + + G+D+ ED
Sbjct: 586 LDYHLFGE-DKESKVCPSCKTGQLSLKLGKFGA--FLACSNYPECTFKKSIVSGNDNNED 642
Query: 1012 TLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSI 1071
+T +++ K++G E + LK GPYG Y+QLGE PKR V I
Sbjct: 643 EGDPSTILNDNKILGTDQDGVE-IYLKKGPYGPYIQLGEQCGKVKPKRTPVPANLKQSEI 701
Query: 1072 TLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKAL 1131
TLE AL+LL P+ +G H G+ I++ ++ G +++ SVPK +++L+ A+
Sbjct: 702 TLEIALKLLNLPLKIGIHKDSGEEIIIGYSKFGPYIKYMCKFISVPKKYDFLNLSLDDAI 761
Query: 1132 EFL 1134
+ +
Sbjct: 762 KLI 764
>gi|383481377|ref|YP_005390292.1| DNA topoisomerase I [Rickettsia rhipicephali str. 3-7-female6-CWPP]
gi|378933716|gb|AFC72219.1| DNA topoisomerase I [Rickettsia rhipicephali str. 3-7-female6-CWPP]
Length = 776
Score = 613 bits (1581), Expect = e-172, Method: Compositional matrix adjust.
Identities = 330/784 (42%), Positives = 480/784 (61%), Gaps = 23/784 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG+ ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGNEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGESISWHVAEVIKEKNQVKSDDFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + +AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTHINDQKLEKFSIINEKKAKDLTEK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V K K+ R+ P+ITS+LQQDAA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQKFHVDKIEKKQQKRQPQPPFITSSLQQDAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKSYGDKYLP-TSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L L++D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLEKDYYKLYELIWKRTIACQMENVIMNLVVANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ E++ E IL LK +PL EV QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESVEDEAEEENKILPPLKEQEPLKTKEVIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 526 FKKYVEYDFTAGLENELDEIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + C C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKVCTSCNTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ + +E K++G E + LK GPYG Y+QLGE PKR+ V + +
Sbjct: 642 NEGEPAAMPNENKVLGTDKNGVE-IYLKKGPYGPYIQLGEQGGKVKPKRSPVPASLNQND 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITL+ AL+LL P+ +G H + IM+ + G +++ SV K +++L+ A
Sbjct: 701 ITLDIALKLLSLPLKIGIHKDSDEEIMIGYGKFGPYIKYMGKFISVQKKYDFLNLSLDDA 760
Query: 1131 LEFL 1134
++ +
Sbjct: 761 MKLI 764
>gi|407973395|ref|ZP_11154307.1| DNA topoisomerase I subunit omega [Nitratireductor indicus C115]
gi|407431236|gb|EKF43908.1| DNA topoisomerase I subunit omega [Nitratireductor indicus C115]
Length = 872
Score = 613 bits (1581), Expect = e-172, Method: Compositional matrix adjust.
Identities = 344/791 (43%), Positives = 482/791 (60%), Gaps = 32/791 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG Y+VL S+GHVRDL A+ GSV PD+DF+M W V SA+ L
Sbjct: 3 LVIVESPAKAKTINKYLGSNYKVLASFGHVRDLPAKDGSVLPDEDFAMSWAVDSASSKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A+ L LA+DPDREGEAI+WH++E+L+Q+ AL + +V RVVF+ IT+ ++
Sbjct: 63 SDITKAVKDADTLFLATDPDREGEAISWHVLEVLRQKKALKDK-SVRRVVFNAITKKAVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDRE
Sbjct: 122 DAMAHPRDVDVPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F +EYW + A L + D F A LT K+L +L I + +A I+
Sbjct: 182 AEIERFVREEYWQIAAKL----ATPRDDL-FEARLTALDGKKLQKLDIKNKEQADGIKAM 236
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A+F+ + + R+NP P + TSTLQQ A+++L+F A+ TM++AQ+LYEG+ +
Sbjct: 237 LQGASFRALSVEAKP-TRRNPAPPFTTSTLQQAASSRLSFGASRTMQIAQRLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ ++ EA + R+ I + +G PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVQMAPEALDQARAAIGKEFGDKFLPEK-PRFYSAKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVFR 768
RPTD R PA + LD D +LY +IW R +A QM+ A + + V+I N D R
Sbjct: 354 RPTDFSRTPAAMRKYLDADQARLYEMIWKRAIASQMEAAEIERTTVEIEAVNGDRKANLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ S + F GF AAY VD + E L ++ G+ E++ QH
Sbjct: 414 AIGSVIRFEGFLAAY-GVDKEEENSDDEESRR-------LPEIREGETQACREIDATQHS 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KK+EELGIGRPSTYA+TLK L+DR+YVT+ R L P+ +GR+V+AFL
Sbjct: 466 TEPPPRYSEASLIKKMEELGIGRPSTYAATLKTLEDRDYVTIDKRRLIPQAKGRLVTAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F +Y FTAD+E +LD +S G WK +L D+W+ FSS+ + L + V L
Sbjct: 526 ENFFERYVEYDFTADLEEKLDKISDGQLSWKEVLRDFWTDFSSHVDGTKELRVTDVLNAL 585
Query: 949 EKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+F + + R+CP CG G L K+ R GA F+GC+ +P C Y + +G+
Sbjct: 586 NDELAPLVFPAREDGGDPRACPRCGSGQLSLKLGRHGA--FVGCSNYPECGYTRQ--FGE 641
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ ED D K++G P ++E++ L+SG +G YVQ GE G KRAS+
Sbjct: 642 GNGEDG---ENGADGDKVLGKDPHTEEEITLRSGRFGPYVQRGE---GKEAKRASLPKGW 695
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
SI LE AL LL P ++G HP+ G+ I + R G + H A++ +
Sbjct: 696 APASIDLEKALALLALPRDIGKHPESGKMISAGIGRYGPFLLHDGGYANLESVEDVFSIG 755
Query: 1127 LEKALEFLSGK 1137
L +A+ ++ K
Sbjct: 756 LNRAVTVIAEK 766
>gi|27380222|ref|NP_771751.1| DNA topoisomerase I [Bradyrhizobium japonicum USDA 110]
gi|27353376|dbj|BAC50376.1| DNA topoisomerase I [Bradyrhizobium japonicum USDA 110]
Length = 828
Score = 613 bits (1580), Expect = e-172, Method: Compositional matrix adjust.
Identities = 343/811 (42%), Positives = 486/811 (59%), Gaps = 46/811 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL S+GHVRDL A++GSV PD +F M+WEV A
Sbjct: 2 NIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDANFKMIWEVDPKAAGR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I +L A+ LILA+DPDREGEAI+WH++E+L+++ AL + + RVVF+ IT+ ++
Sbjct: 62 LNDIAKSLKNADRLILATDPDREGEAISWHVLEVLKEKRALKDQ-KIERVVFNAITKQAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 TDAMKHPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F +EYW++ A L + F A L K++ +L IG+ EA++ ++
Sbjct: 181 ELEIEKFVAREYWSLVATLLTPRGDA-----FEARLVGADGKKIQRLDIGTGAEAENFKK 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +A + V + R P+ TSTLQQ+A+ K F+ +TM++AQ+LYEG+ +
Sbjct: 236 ALEAAAYAVTAVDAKPARRNPQAPFTTSTLQQEASRKYGFAPAHTMRIAQRLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I A + R +I E YG+ + PE PR+Y K KNAQEAHEAI
Sbjct: 295 GETTGLITYMRTDGVQIDPSAITQARKVIGEDYGNAYVPE-APRQYQAKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFR 768
RPTD+ R P +S LD D +LY LIW RT+A QM+ A + + VDI ++ R
Sbjct: 354 RPTDMSRRPDSMSRKLDSDQARLYELIWKRTIASQMEAAELERTTVDITAKAGGRTLELR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ V+F GF A Y+ E +++ E L ++ GD L + + QH
Sbjct: 414 ATGQVVKFDGFLALYQ----------EGRDDEEDEDSRRLPAMSAGDGLKRQSLAVTQHF 463
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP R+SE SLVK++EELGIGRPSTYAS L+VL+DR YV ++ + L+ E +GR+V AFL
Sbjct: 464 TEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVKLEKKRLHGEDKGRVVVAFL 523
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+FS +Y FTA++E +LD +S W+ +L D+W+ F + L + QV +L
Sbjct: 524 ESFFSRYVEYDFTANLEEQLDRISNNEISWQQVLKDFWNGFIGAVDEIKDLRVAQVLDVL 583
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
+ G ++ P D R CP CG G L K +FGA F+GC+ +P C Y +
Sbjct: 584 DDMLGQHIYP--PRADGGDIRQCPSCGNGRLNLKAGKFGA--FVGCSNYPECRYTRQLAA 639
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRAS 1061
D E T R+ +G P + V +K+G +G Y+QLGE + G PKRA
Sbjct: 640 ---DSEATADRS--------LGQDPDTGRDVWVKAGRFGPYIQLGEQKDYEEGEKPKRAG 688
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + LE AL+LL P +G HP+ GQPI L R G V+H +T AS+ +
Sbjct: 689 IPKGTSPGDVELELALKLLSLPREIGKHPETGQPITAGLGRFGPFVKHEKTYASLEAGDE 748
Query: 1122 PNDVTLEKALEFLSGKDV----RRCGRPKGK 1148
D+ L +A+ ++ K RR G GK
Sbjct: 749 VFDIGLNRAVTLIAEKVAKGPSRRFGADPGK 779
>gi|424894598|ref|ZP_18318172.1| DNA topoisomerase I, bacterial [Rhizobium leguminosarum bv. trifolii
WSM2297]
gi|393178825|gb|EJC78864.1| DNA topoisomerase I, bacterial [Rhizobium leguminosarum bv. trifolii
WSM2297]
Length = 884
Score = 613 bits (1580), Expect = e-172, Method: Compositional matrix adjust.
Identities = 341/811 (42%), Positives = 485/811 (59%), Gaps = 30/811 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M+WEV A+
Sbjct: 2 NVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDGASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH+++ML ++ L+ V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSSDGLFLATDPDREGEAISWHVLDMLNKKRVLNGK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMADPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +IG+ EA ++
Sbjct: 181 ESEIERFISEEYWNISALLKTPRGDE-----FEAKLVSANGKRLQPRAIGNGEEAGRLKT 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++ A++ V+ + V++NP P+ TSTLQQ A++ L FSA+ TM++AQKLYEGV +
Sbjct: 236 LLDGASY-VVDTVEAKPVKRNPGPPFTTSTLQQAASSNLGFSASRTMQVAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R I +++G + P++ R Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARRAIVDQFGERYMPDKA-RFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D ++LY LIW R +A QM A + + +I N E
Sbjct: 353 IRPTDFDRTPDRVRKFLDADQIRLYDLIWKRGIASQMASAEIERTTAEITADNKGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDEDGRLPEINARENLAKQKINSTQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TL L+DR+YVT+ R L P+ +GR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLATLRDRDYVTIDKRKLIPQAKGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTAD+E +LD +SAG WK +L D+W F + + L + V
Sbjct: 527 LESFFTKYVEYDFTADLEEKLDRISAGELNWKQVLRDFWKDFFAQIEDTKELRVTNVLDS 586
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L + +F + R C VCG G L K+ ++GA F+GC+ +P CNY +
Sbjct: 587 LNEALAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNYTRQLSSE 644
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+ E D ++EPK +G P + E++ L+SG +G Y+Q G+ G KRAS+
Sbjct: 645 NGGEAD----GAALNEPKNLGTDPTTGEELTLRSGRFGPYIQRGD---GKEAKRASLPKG 697
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ I E A+ L+ P ++G HP+ G+ I + R G + H + A++ V
Sbjct: 698 WKPEDIDYEKAMALISLPRDIGKHPESGKMISSGIGRYGPFLLHDGSYANLESIEDVFSV 757
Query: 1126 TLEKALEFLSGKDVRRCGR-PKGKPKREEAL 1155
L +A+ ++ K + GR +G P +AL
Sbjct: 758 GLNRAVTVIAEKANQAPGRGSRGTPAALKAL 788
>gi|430003239|emb|CCF19024.1| DNA topoisomerase I [Rhizobium sp.]
Length = 885
Score = 613 bits (1580), Expect = e-172, Method: Compositional matrix adjust.
Identities = 342/795 (43%), Positives = 483/795 (60%), Gaps = 36/795 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M WEV SA+
Sbjct: 2 NVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDQDFEMSWEVDSASQKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ G++ L LA+DPDREGEAI+WH++++L+++ L + V RVVF+ IT+ ++
Sbjct: 62 IKDIADAVKGSDGLFLATDPDREGEAISWHVLDLLKKRRVLGDK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ A R+IDA LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMAAPRDIDAPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL SI + +A ++
Sbjct: 181 EAEIERFVSEEYWNISALLSTPRGDQ-----FEARLVSADGKRLQNRSIKTGDDANRLKT 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A++ V+++ + V++NP P+ TSTLQQ A++ L F+A+ TM++AQKLYEGV +
Sbjct: 236 LLEGASY-VVESVEAKPVKRNPGPPFTTSTLQQAASSNLGFNASRTMQVAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R + E++G + PE+ PR Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDGARRAVQEQFGDRYVPEK-PRFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D +LY LIW R +A QM A + + V+I N E
Sbjct: 353 IRPTDFNRTPEKVRRHLDADQARLYELIWKRGIASQMASAEIERTTVEILADNNGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AY D + ++++E+ R L + + L V QH
Sbjct: 413 RAVGSVIRFDGFLGAYMDQREEGDKGEDDDEDGR------LPEINAREKLDKNNVNASQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TLK L DR YVT + R L P+ +GR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLKTLSDREYVTTEKRKLIPQAKGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L ++F++ +Y FTAD+E +LD +SAG +WK +L D+W F + + L + V
Sbjct: 527 LENFFTKYVEYDFTADLEEKLDRISAGELDWKQVLRDFWKDFFAQIEDTKELRVTNVLDA 586
Query: 948 LEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
L + +F P ++ R+C VCG G L K+ ++GA F+GC+ +P CN+ +
Sbjct: 587 LNEALAPLVF---PKREDGSDPRTCQVCGTGKLSLKLGKYGA--FVGCSNYPECNFTRQL 641
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
+E + ++EPK +G P + E++ L+SG +G Y+Q GE G KR+S+
Sbjct: 642 -----SQEGAEAEASGLNEPKSLGADPHTGEELTLRSGRFGPYIQRGE---GKDAKRSSL 693
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+ I E AL L+ P ++G HP+ G+ I L R G + H T A++
Sbjct: 694 PKGWKPEEIDHEKALALINLPRDIGKHPESGKMISAGLGRYGPFLLHDGTYANLESVEDV 753
Query: 1123 NDVTLEKALEFLSGK 1137
+ L +A+ L+ K
Sbjct: 754 FTIGLNRAVTVLAEK 768
>gi|86357272|ref|YP_469164.1| DNA topoisomerase I [Rhizobium etli CFN 42]
gi|86281374|gb|ABC90437.1| DNA topoisomerase I protein [Rhizobium etli CFN 42]
Length = 884
Score = 613 bits (1580), Expect = e-172, Method: Compositional matrix adjust.
Identities = 339/808 (41%), Positives = 484/808 (59%), Gaps = 36/808 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M+WEV A+
Sbjct: 2 NVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDGASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH+++ML ++ L+ +V RVVF+ IT+ ++
Sbjct: 62 MKDIAEAVKSSDGLFLATDPDREGEAISWHVLDMLNKKRVLNGK-SVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMADPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +IG+ +A ++
Sbjct: 181 ESEIERFISEEYWNISALLKTPRGDE-----FEARLVSAHGKRLPPRAIGNGEDAGRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A++ ++ + +++NP P+ TSTLQQ A++ L FSA+ TM++AQKLYEGV +
Sbjct: 236 LLEGASY-IVDTVEAKPIKRNPGPPFTTSTLQQAASSNLGFSASRTMQIAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R I +++G + PE+ R Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARRAILDQFGERYLPEKA-RFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG--NADESIVF 767
IRPTD R P + LD D ++LY LIW R +A QM A + + +I N E
Sbjct: 353 IRPTDFNRSPDRVRKFLDADQIRLYELIWKRGIASQMASAEIERTTAEITAENKGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDEDGRLPEINARETLAKQKINSTQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TL L+DR+YVT+ R L P+ +GR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLATLRDRDYVTIDKRKLIPQAKGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTAD+E +LD +SAG WK +L D+W F + + L + V
Sbjct: 527 LESFFTKYVEYDFTADLEEKLDRISAGELNWKQVLRDFWKDFFAQIEDTKELRVTNVLDS 586
Query: 948 LEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
L + +F P ++ R C VCG G L K+ R+GA F+GC+ +P CNY +
Sbjct: 587 LNEALAPLVF---PKREDGGDPRICQVCGTGNLSLKLGRYGA--FVGCSNYPECNYTRQL 641
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
+ E + + N EPK +G P + E++ L+SG +G Y+Q G+ G KRAS+
Sbjct: 642 SSENGGEAEGVALN----EPKSLGTDPTTGEELTLRSGRFGPYIQRGD---GKEAKRASL 694
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+ I E A+ L+ P ++G HP+ G+ I + R G + H + A++
Sbjct: 695 PKGWKPEDIDYEKAMALISLPRDIGRHPETGKMISSGIGRYGPFLLHDGSYANLETVEDV 754
Query: 1123 NDVTLEKALEFLSGKDVRRCGR-PKGKP 1149
V L +A+ ++ K + GR +G P
Sbjct: 755 FSVGLNRAVTLIAEKASKAPGRGARGTP 782
>gi|409436936|ref|ZP_11264095.1| DNA topoisomerase 1 [Rhizobium mesoamericanum STM3625]
gi|408751410|emb|CCM75249.1| DNA topoisomerase 1 [Rhizobium mesoamericanum STM3625]
Length = 885
Score = 612 bits (1579), Expect = e-172, Method: Compositional matrix adjust.
Identities = 339/795 (42%), Positives = 475/795 (59%), Gaps = 35/795 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M+WEV A+
Sbjct: 2 NVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDGASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK I A+ ++ L LA+DPDREGEAI+WH+++ML ++ L+ TV RVVF+ IT+ ++
Sbjct: 62 LKDIADAVKSSDGLFLATDPDREGEAISWHVLDMLNKKRVLNGK-TVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMADPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL SI + EA ++
Sbjct: 181 ESEIERFISEEYWNLSALLKTPRGDE-----FEAKLVAANGKRLQPRSIANGEEAGTLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A + V+ + V++NP P+ TSTLQQ A++KL FSA+ TM++AQKLYEGV +
Sbjct: 236 LLEGATY-VVDTVEAKPVKRNPGPPFTTSTLQQAASSKLGFSASRTMQIAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R I +++G + PE+ R Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARKAIVDQFGQRYMPEKA-RFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P ++ LD D L+LY LIW R +A QM A + + +I N E
Sbjct: 353 IRPTDFNRSPDLVRQFLDADQLRLYDLIWKRGIASQMASAEIERTTAEITADNKGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDEDGRLPEINARENLAKQKINSTQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TL L+DR YVT+ R L P+ +GR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLATLRDREYVTIDKRKLIPQAKGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTAD+E +LD +SAG WK +L D+W F S + L + V
Sbjct: 527 LESFFTKYVEYDFTADLEEKLDRISAGELNWKQVLRDFWKDFFSQIEDTKELRVTNVLDS 586
Query: 948 LEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
L + +F P ++ R C VCG G L K+ ++GA F+GC+ +P CNY +
Sbjct: 587 LNEALAPLVF---PKREDGGDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNYTRQL 641
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
E + ++EPK +G P + E++ L+SG +G Y+Q G+ G KR+S+
Sbjct: 642 ----SSEGGSEAEGVALNEPKNLGVDPVTGEELTLRSGRFGPYIQRGD---GKEAKRSSL 694
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+ I E A+ L+ P ++G HP+ G+ I + R G + H A++
Sbjct: 695 PKGWKPEDIDYEKAMALISLPRDIGKHPETGKMISSGIGRYGPFLLHDGGYANLESVEDV 754
Query: 1123 NDVTLEKALEFLSGK 1137
+ L +A+ ++ K
Sbjct: 755 FSIGLNRAVTVIAEK 769
>gi|157803936|ref|YP_001492485.1| DNA topoisomerase I [Rickettsia canadensis str. McKiel]
gi|157785199|gb|ABV73700.1| DNA topoisomerase I [Rickettsia canadensis str. McKiel]
Length = 777
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 328/786 (41%), Positives = 480/786 (61%), Gaps = 26/786 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F++ +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAIKYDISDKASKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGE+I+WH+ E++++++ + RV F+EIT+ +I
Sbjct: 63 DAIVKDAQKADAVYLATDPDREGESISWHVAEVIKEKNKVKAADFFKRVAFNEITQKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH +++L + SI + +AKD+ +K
Sbjct: 183 DEIERFKAEEYWDISLKMQNSNNE-----LFTAKLTHINNQKLERFSITNKKDAKDLTKK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S NF + + K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQNFHIDQIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y VKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAVADIRKLIDKNYGDKYLP-SSPRIYKSTVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L L +D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLAKDYYKLYELIWKRTIACQMENVIMDLVVANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF Y E VD A EEN +L LK + L E+ QH T+
Sbjct: 416 STIAFDGFYKVYRESVDDEA-----EEEN------KMLPLLKENEQLNTKEIIPNQHFTE 464
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKKLEELGIGRPSTYA+ L VLQDR YV++K + PE GR+V+ FL
Sbjct: 465 PPPRYSEASLVKKLEELGIGRPSTYATILSVLQDRKYVSLKKKRFMPEELGRLVTVFLVG 524
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 525 FFKKYVEYDFTAGLENELDEIAAGKLEWKSALSNFWSGFNHNIKSVNEQKITEIISYVQK 584
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG--DDD 1008
LF + ++CP C G L K+ +FGA F+ CN +P+C + + G +++
Sbjct: 585 ALDYHLFGE-NQESKACPSCKTGELSLKLGKFGA--FLACNNYPKCTFRKSIVSGNNNNE 641
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDV 1068
ED L N +E K++G E + LK GPYG Y+Q GE KR+ V +
Sbjct: 642 NEDKLSTTPN-EENKVLGTDKDGIE-IYLKKGPYGPYIQRGEHEGTVKLKRSPVPASLNQ 699
Query: 1069 DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
ITL+ AL+LL P+ +G H + IM+ + G +++ S+PK +++L+
Sbjct: 700 SDITLDIALKLLSLPLKIGTHKDTHEEIMIGYGKFGPYIKYIGKFISIPKKYDFLNLSLD 759
Query: 1129 KALEFL 1134
+A++ +
Sbjct: 760 EAIQLI 765
>gi|190891321|ref|YP_001977863.1| DNA topoisomerase I [Rhizobium etli CIAT 652]
gi|190696600|gb|ACE90685.1| DNA topoisomerase I protein [Rhizobium etli CIAT 652]
Length = 884
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 339/805 (42%), Positives = 482/805 (59%), Gaps = 30/805 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M+WEV A+
Sbjct: 2 NVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDGASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH+++ML ++ L+ +V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSSDGLFLATDPDREGEAISWHVLDMLNKKRVLNGK-SVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMADPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +IG+ +A ++
Sbjct: 181 ESEIERFISEEYWNLSALLKTPRGDE-----FEARLVSANGKRLPPRAIGNGEDAGRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A++ ++ + V++NP P+ TSTLQQ A++ L FSA+ TM++AQKLYEGV +
Sbjct: 236 LLEGASY-IVDTVEAKPVKRNPGPPFTTSTLQQAASSNLGFSASRTMQIAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R I +++G + PE+ R Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARRAILDQFGERYLPEKA-RFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P L LD D ++LY LIW R +A QM A + + +I N E
Sbjct: 353 IRPTDFYRSPDRLRKFLDADQIRLYELIWKRGIASQMASAEIERTTAEITADNKGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDEDGRLPEINARETLAKQKINSTQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TL L+DR+YVT+ R L P+ +GR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLATLRDRDYVTIDKRKLIPQAKGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTAD+E +LD +SAG WK +L D+W F + + L + V
Sbjct: 527 LESFFTKYVEYDFTADLEEKLDRISAGELNWKQVLRDFWKDFFAQIEDTKELRVTNVLDS 586
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L + +F + R C VCG G L K+ ++GA F+GC+ +P CNY +
Sbjct: 587 LNEALAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNYTRQLSSE 644
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+ E + + N EPK +G P + E++ L+SG +G Y+Q G+ G KRAS+
Sbjct: 645 NGGEAEGVALN----EPKNLGTDPTTGEELTLRSGRFGPYIQRGD---GKEAKRASLPKG 697
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ I E A+ L+ P ++G HP+ G+ I + R G + H + A++ V
Sbjct: 698 WKPEDIDYEKAMALISLPRDIGKHPETGKMISSGIGRYGPFLLHDGSYANLETVEDVFSV 757
Query: 1126 TLEKALEFLSGKDVRRCGR-PKGKP 1149
L +A+ ++ K + GR +G P
Sbjct: 758 GLNRAVTVIAEKANKAPGRGARGTP 782
>gi|398824441|ref|ZP_10582772.1| DNA topoisomerase I, bacterial [Bradyrhizobium sp. YR681]
gi|398224888|gb|EJN11179.1| DNA topoisomerase I, bacterial [Bradyrhizobium sp. YR681]
Length = 938
Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust.
Identities = 340/811 (41%), Positives = 484/811 (59%), Gaps = 46/811 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL S+GHVRDL A++GSV PD +F M+WEV A
Sbjct: 27 NIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDANFKMIWEVDPKAAGR 86
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I +L A+ LILA+DPDREGEAI+WH++E+++++ AL + + RVVF+ IT+ ++
Sbjct: 87 LNDIAKSLKNADRLILATDPDREGEAISWHVLEVMKEKRALKDQ-KIERVVFNAITKQAV 145
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 146 TDAMKNPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 205
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F +EYW++ A L + F A L K++ +L IG+ EA+D ++
Sbjct: 206 ELEIEKFVAREYWSLVATLLTPRGDA-----FEARLVGADGKKIQRLDIGTGAEAEDFKK 260
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +A + V + R P+ TSTLQQ+A+ K F+ +TM++AQ+LYEG+ +
Sbjct: 261 ALETAAYAVTAVDAKPARRNPQAPFTTSTLQQEASRKYGFAPAHTMRIAQRLYEGIDI-G 319
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I A + R +I E YG+ + PE PR+Y K KNAQEAHEAI
Sbjct: 320 GETTGLITYMRTDGVQIDPSAITQARKVIGEDYGNAYVPE-APRQYQAKAKNAQEAHEAI 378
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFR 768
RPTD+ R P +S LD D +LY LIW RT+A QM+ A + + VDI ++ R
Sbjct: 379 RPTDLSRRPDSMSRKLDADQARLYELIWKRTIASQMESAELERTTVDITAKAGGRTLELR 438
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ V+F GF A Y+ E +++ E L ++ D L + + QH
Sbjct: 439 ATGQVVKFDGFLALYQ----------EGRDDEEDEDSRRLPAMSPNDALKRQSLAVTQHF 488
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP R+SE SLVK++EELGIGRPSTYAS L+VL+DR YV ++ + L+ E +GR+V AFL
Sbjct: 489 TEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVKLEKKRLHGEDKGRVVVAFL 548
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F+ +Y FTA +E +LD +S W+ +L D+W+ F + L + QV +L
Sbjct: 549 ESFFARYVEYDFTAGLEEQLDRISNNEISWQQVLKDFWTGFIGAVDEIKDLRVAQVLDVL 608
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
+ G ++ P D R CP CG G L K +FGA F+GC+ +P C Y +
Sbjct: 609 DDMLGQHIYP--PRADGGDIRQCPSCGNGRLNLKAGKFGA--FVGCSNYPECRYTRQLAA 664
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRAS 1061
D E T R+ +G P + V +K+G +G Y+QLGE + G PKRA
Sbjct: 665 ---DSEQTADRS--------LGQDPVTGRDVWVKAGRFGPYIQLGEQKDYEEGEKPKRAG 713
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + LE AL+LL P +G HP+ G+PI L R G V+H +T AS+ +
Sbjct: 714 IPKGTSPGDVELELALKLLSLPREIGKHPETGEPITAGLGRFGPFVKHEKTYASLEAGDE 773
Query: 1122 PNDVTLEKALEFLSGKDV----RRCGRPKGK 1148
D+ L +A+ ++ K RR G GK
Sbjct: 774 VFDIGLNRAVTLIAEKVAKGPSRRFGADPGK 804
>gi|83309781|ref|YP_420045.1| DNA topoisomerase I [Magnetospirillum magneticum AMB-1]
gi|82944622|dbj|BAE49486.1| DNA topoisomerase I [Magnetospirillum magneticum AMB-1]
Length = 898
Score = 611 bits (1575), Expect = e-171, Method: Compositional matrix adjust.
Identities = 351/810 (43%), Positives = 476/810 (58%), Gaps = 52/810 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG + VL SYGH+RDL + GSVRPD+ F+M WE + +
Sbjct: 5 VVVVESPAKAKTINKYLGSDFHVLASYGHIRDLPPKDGSVRPDEGFAMDWETDPKSERQI 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K I A+ GA+ L LA+DPDREGEAI+WH+ ++L+ + AL + + V RVVF+EIT++++
Sbjct: 65 KEIVAAVKGADKLFLATDPDREGEAISWHVRQVLEARKAL-KGVEVKRVVFNEITKSAVL 123
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ REI LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 124 DAMRNPREIHQELVDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERE 183
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKP+EYWT+ A + L A LTH K+L++ + S A+D E K
Sbjct: 184 SEIESFKPREYWTIAADFLTPKGALLS-----AGLTHLGGKKLDKFDLSSEALARDAESK 238
Query: 592 INSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
SA + +R R+NP P+ TSTLQQ+A+ KL F+A TM+LAQ+LYEGV +
Sbjct: 239 AASAR-YAVAAVERKRTRRNPYPPFTTSTLQQEASRKLYFAAARTMQLAQRLYEGVDI-G 296
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA R++I + +G + PE PR Y K KNAQEAHEAI
Sbjct: 297 GETVGLITYMRTDGVQMAAEAIAGARAVIAQDFGKVYVPE-APRVYKTKAKNAQEAHEAI 355
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ R P ++ LD+D L+LY LIW RT+A QM A + Q+ VDI IVFR++
Sbjct: 356 RPTDLARRPEDVARYLDKDQLRLYELIWKRTLASQMAAAELDQVGVDIAGDQHGIVFRAT 415
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S V F GF Y ++ +++D +A +L + D + + +QH TQ
Sbjct: 416 GSVVVFDGFLKVYR---------EDKDDSDDEDAEKLLPDVTEKDAMDRKAMRTEQHFTQ 466
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP R+SE SLVK++EELGIGRPSTYAS L VLQ+RNYV + R PE RGR+V+AFL
Sbjct: 467 PPPRFSEASLVKRMEELGIGRPSTYASILSVLQERNYVRLDQRRFIPEDRGRLVTAFLES 526
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F +Y+FTAD+E +LD+VS G +W+ +L +W FS + L + QV L++
Sbjct: 527 FFGRYVEYNFTADLENQLDDVSGGRDDWRKVLDRFWRDFSGAVDETKDLRVAQVLDALDE 586
Query: 951 TFGDSLFA--SLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
G F + RSCP C G L K+ +FGA FIGC+ +P C +
Sbjct: 587 LLGPHFFPDNGTGHDPRSCPTCNAGRLSLKLGKFGA--FIGCSAYPECRFTRPL------ 638
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT--------------- 1053
+ PK +G+ P S V L+ GPYG YVQLG++ T
Sbjct: 639 TTGGEGEEEVREGPKELGNDPESGLPVTLRKGPYGHYVQLGDETTLKAEPAPVPEKGKKA 698
Query: 1054 --------GYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGF 1105
PKR S+ + +TL+ A LL P +G HP+ G+ I + R G
Sbjct: 699 PKTAKAVKAPKPKRVSLYKGLEPAGVTLDIACRLLALPRLVGTHPETGKSISAGVGRFGP 758
Query: 1106 SVRHRRTIASVPKNMKPNDVTLEKALEFLS 1135
V H S+ K+ + + +A+E LS
Sbjct: 759 YVVHDGVYKSLAKDDDVLVIGMNRAMELLS 788
>gi|338737969|ref|YP_004674931.1| DNA topoisomerase I [Hyphomicrobium sp. MC1]
gi|337758532|emb|CCB64357.1| DNA topoisomerase I [Hyphomicrobium sp. MC1]
Length = 930
Score = 610 bits (1574), Expect = e-171, Method: Compositional matrix adjust.
Identities = 347/817 (42%), Positives = 485/817 (59%), Gaps = 40/817 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VV+VES KAK I YLG Y+V+ SYGHVRDL A+ GSV PD DF+M WEV + +
Sbjct: 2 NVVIVESAAKAKTINKYLGSGYKVIASYGHVRDLPAKDGSVEPDHDFNMHWEVDTKSQKI 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
++ I A+ A+ LILA+DPDREGEAI+WHI+++L Q+ AL ++ V RV F+ IT+ SI
Sbjct: 62 MREIAEAVKKADKLILATDPDREGEAISWHILQILNQKKALGKDTEVERVAFNAITKQSI 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
AL+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 122 LAALKEPRKIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLVCDR 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ FK +EYWT+EA+L ++ + + L L +L I A I +
Sbjct: 182 EAEIEAFKTEEYWTIEALLSTAKNEDVRS-----RLVAIDGTALKKLDIKDEATATAIRK 236
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +F++ K++ R P+ TSTLQ DA+ KL FSA TM++AQ+LYEGV +
Sbjct: 237 ALLGQDFRIASVEKKATKRNPFPPFTTSTLQMDASRKLGFSAKQTMQIAQRLYEGVDI-G 295
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I EA +IR +I YG ++ P R+Y K KNAQEAHEAI
Sbjct: 296 GETVGLITYMRTDGVQIVPEAVSQIRDVISAEYGKNYTP--FAREYKTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQI--QVDIGNAD-ESIVF 767
RPTD RR P + L++D LY LIW RT+A QM A + Q ++D+ +D ++
Sbjct: 354 RPTDPRRKPDQVRKHLEKDQAALYDLIWKRTIASQMAAADIEQTTAEIDVKGSDGKAYGL 413
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAI---LNSLKTGDPLYLGEVEL 824
R++ S + F GF YE+ +R E ++D + L L GD L E+
Sbjct: 414 RANGSVLMFDGFLKVYEEGRDDRVRTIEKGKDDTADEDDDSRRLPPLAVGDRLKDKEISA 473
Query: 825 KQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMV 884
QH TQPP R+SE +LVK++EELGIGRPSTYAST+ VL DR+YV ++ + L PE +GR+V
Sbjct: 474 DQHFTQPPPRFSEATLVKRMEELGIGRPSTYASTMAVLVDRDYVRIEKKRLIPEDKGRLV 533
Query: 885 SAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV 944
AFL +F +Y FTAD+E +LD +S E+K +L D+W F + + L + V
Sbjct: 534 IAFLESFFKRYVEYDFTADLEEKLDLISNDELEYKQVLRDFWRDFMAAVGEIKDLRVGDV 593
Query: 945 EKMLEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVS-RFGAGYFIGCNQHPRCNY 998
+ L + G +F P+K R CP CG G L K+S ++GA FIGC +P CNY
Sbjct: 594 LEALNEMLGPHVF---PDKGDGSDPRLCPKCGTGRLSLKISGKYGA--FIGCGNYPECNY 648
Query: 999 IAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPK 1058
+ D + L + K++G++ V +K+G +G Y+QLGE PK
Sbjct: 649 TRQLTQSSDGDAAAL-------DGKILGYNDDGL-AVTMKTGRFGPYIQLGEAEGDEKPK 700
Query: 1059 RASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPK 1118
R+S+ D ++ E A++LL P ++G HP +G I L R G + H + A
Sbjct: 701 RSSIPRGIDAATLDFERAMQLLSLPRDVGEHPDEGGMITAGLGRFGPFIVHEKDGAKTYV 760
Query: 1119 NMKPND----VTLEKALEFLSGKDVRRCGRPKGKPKR 1151
N++ + V L +A+ ++ K R G K + +R
Sbjct: 761 NLESLEDVFTVGLNRAVTLIAEK---RAGGGKSRFQR 794
>gi|83945521|ref|ZP_00957868.1| DNA topoisomerase I [Oceanicaulis sp. HTCC2633]
gi|83851097|gb|EAP88955.1| DNA topoisomerase I [Oceanicaulis alexandrii HTCC2633]
Length = 884
Score = 610 bits (1573), Expect = e-171, Method: Compositional matrix adjust.
Identities = 348/801 (43%), Positives = 479/801 (59%), Gaps = 43/801 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y VL S+GHVRDL + GSVRP++DF+M W V +
Sbjct: 2 NVVVVESPAKAKTINKYLGSDYTVLASFGHVRDLPPKDGSVRPEEDFAMDWTVEGKSKER 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K+I AL A+ LILA+DPDREGEAI+WH++E LQ++ L + V RV F+ IT+ ++
Sbjct: 62 IKAIADALKDADTLILATDPDREGEAISWHLLEALQKRKVLKDK-HVQRVAFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ RE+D LV+AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LI +R
Sbjct: 121 SDAMANPRELDMELVEAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLITER 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F QEYW+V+A + + + L + LT F+ +++ +L+IG A+ E
Sbjct: 181 ETEIERFVSQEYWSVDAEVKAEGADQL----IASKLTRFEGEKITRLTIGEEKRARAAEA 236
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I SA+F V + R P P+ TSTLQQ+AA KL F A TM+ AQ+LYEGV L
Sbjct: 237 AIKSASFTVAAVEAKPTKRNPPPPFTTSTLQQEAARKLGFDAQRTMRTAQRLYEGVNL-G 295
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ + A + R +I ER+GS PE+ PR Y K KNAQEAHEAI
Sbjct: 296 GETVGLITYMRTDGVSMDMGAMMQARDVISERHGSDFVPEK-PRFYSTKAKNAQEAHEAI 354
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L+ D KLY+LIW R +A QM+ A + + +D NAD+S+ R++
Sbjct: 355 RPTSFTRHPDEMR--LEADQAKLYALIWKRAVASQMEAAQLERTTIDFENADQSLALRAT 412
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
+ V F GF A Y+ E +++ E L ++K G +QH TQ
Sbjct: 413 GTVVTFPGFFALYQ----------EGRDDEEDEGENRLPAVKQGASAKAETTLAEQHFTQ 462
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E SLVKK+EELGIGRPSTYASTL VL+DR+YV ++ + PE +GR+V AFL +
Sbjct: 463 PPPRYTEASLVKKMEELGIGRPSTYASTLSVLRDRDYVRMEDKRFKPEDKGRVVIAFLEN 522
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F+ Y FTA +E +LD VSAG E+K LL D+W F + L I V +
Sbjct: 523 FFARYVQYDFTASLEDQLDKVSAGDLEYKQLLRDFWKDFHASIEDIADLRIGDVIDAMNV 582
Query: 951 TFGDSLFASLPNKDRS----CPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+F P +D S CP C EG L ++ + GA F+GC+ +P C Y + L G
Sbjct: 583 ALAPLIFP--PREDGSDPKVCPKCNEGALSLRLGKHGA--FVGCSNYPDCRY-TRPLGG- 636
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQL---GEDRTGYLPKRASVS 1063
E D + + +G HP + ++LK G +G Y+++ ED+ P+R S+
Sbjct: 637 -GELDAVAGDGE------LGEHPETGAMIVLKDGRFGPYLEMQVEDEDK----PRRGSIP 685
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
D SITLE A+ L+ P +G HP+DG+ I + R G V+H +T A++ +
Sbjct: 686 KGWDPASITLEKAVALIDLPRKVGPHPEDGEMIEAGIGRYGPFVKHGKTYANLANADEVF 745
Query: 1124 DVTLEKALEFLSGKDVRRCGR 1144
+V L +A++ + K GR
Sbjct: 746 EVGLNRAVDLIEQKKANPRGR 766
>gi|383771359|ref|YP_005450424.1| DNA topoisomerase I [Bradyrhizobium sp. S23321]
gi|381359482|dbj|BAL76312.1| DNA topoisomerase I [Bradyrhizobium sp. S23321]
Length = 940
Score = 610 bits (1573), Expect = e-171, Method: Compositional matrix adjust.
Identities = 338/811 (41%), Positives = 485/811 (59%), Gaps = 46/811 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL S+GHVRDL A++GSV PD +F M+WE+ A
Sbjct: 27 NIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDANFKMIWEIDPKAAGR 86
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I +L A+ LILA+DPDREGEAI+WH++E+L+++ AL + + RVVF+ IT+ ++
Sbjct: 87 LNDIAKSLKNADRLILATDPDREGEAISWHVLEVLKEKRALKDQ-KIERVVFNAITKQAV 145
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 146 TDAMKHPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 205
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F +EYW++ A L + F A L K++ +L IG+ EA+D ++
Sbjct: 206 ELEIEKFVAREYWSLIATLLTPRGDA-----FEARLVGADGKKIQRLDIGTGAEAEDFKK 260
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +A++ V + R P+ TSTLQQ+A+ K F+ +TM++AQ+LYEG+ +
Sbjct: 261 ALEAASYAVTAVDAKPARRNPQAPFTTSTLQQEASRKYGFAPAHTMRIAQRLYEGIDI-G 319
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I A + R +I E YG + P+ PR+Y K KNAQEAHEAI
Sbjct: 320 GETTGLITYMRTDGVQIDPSAITQARQVIGEDYGKAYVPD-APRQYQAKAKNAQEAHEAI 378
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFR 768
RPTD+ R P ++ LD D +LY LIW RT+A QM+ A + + VDI ++ R
Sbjct: 379 RPTDMSRRPDTMNRKLDADQARLYELIWKRTIASQMESAELERTTVDITAKAGSRTLELR 438
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ V+F GF A Y+ E +++ E L ++ D L + + QH
Sbjct: 439 ATGQVVKFDGFLALYQ----------EGRDDEEDEDSRRLPAMSPSDALKRQSLAVTQHF 488
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP R+SE SLVK++EELGIGRPSTYAS L+VL+DR YV ++ + L+ E +GR+V AFL
Sbjct: 489 TEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVKLEKKRLHGEDKGRVVVAFL 548
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F+ +Y FTA++E +LD +S W+ +L D+W+ F + L + QV +L
Sbjct: 549 ESFFARYVEYDFTANLEEQLDRISNNEISWQQVLKDFWTGFIGAVDEIKDLRVAQVLDVL 608
Query: 949 EKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
+ G ++ P D R CP CG G L K +FGA F+GC+ +P C Y +
Sbjct: 609 DDMLGQHIYP--PRADGGDIRQCPSCGNGRLNLKAGKFGA--FVGCSNYPECRYTRQLAA 664
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRAS 1061
D E T R+ +G P + V +K+G +G Y+QLGE + G PKRA
Sbjct: 665 ---DSETTADRS--------LGQDPDTGRDVWVKAGRFGPYIQLGEQKDYAEGEKPKRAG 713
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + LE AL+LL P +G HP+ G+PI L R G V+H +T AS+ +
Sbjct: 714 IPKGTSPGDVELELALKLLSLPREIGKHPETGEPITAGLGRFGPFVKHEKTYASLEAGDE 773
Query: 1122 PNDVTLEKALEFLSGKDV----RRCGRPKGK 1148
D+ L +A+ ++ K RR G GK
Sbjct: 774 VFDIGLNRAVTLIAEKVAKGPSRRFGADPGK 804
>gi|383312393|ref|YP_005365194.1| DNA topoisomerase I [Candidatus Rickettsia amblyommii str. GAT-30V]
gi|378931053|gb|AFC69562.1| DNA topoisomerase I [Candidatus Rickettsia amblyommii str. GAT-30V]
Length = 779
Score = 610 bits (1573), Expect = e-171, Method: Compositional matrix adjust.
Identities = 332/785 (42%), Positives = 480/785 (61%), Gaps = 25/785 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DTIVKDAKKADAVYLATDPDREGESISWHVAEVIKEKNQVKSDDFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTHVNDQKLEKFSIINEKNAKDLTEK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQKFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGITLSNDAIADIRKLIDKSYGDKYLP-TSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L L++D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLEKDYYKLYELIWKRTIACQMKNVIMDLVVANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF Y E VD A EEN +L LK +PL EV QH T+
Sbjct: 416 STIAFDGFYKVYRESVDDEA-----EEEN------KMLPPLKEQEPLKTKEVIPNQHFTE 464
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL
Sbjct: 465 PPPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVG 524
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 525 FFKKYVEYDFTAGLENELDEIAAGKLEWKAALNNFWSSFNHNIESVNEQKITEIISYVQK 584
Query: 951 TFGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDE 1009
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+++
Sbjct: 585 ALDYHLFGE--NKESKVCPSCNTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNNNN 640
Query: 1010 EDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVD 1069
E+ + +E K++G E + LK GPYG Y+QLGE PKR+ V + +
Sbjct: 641 ENEGEPTAMPNENKVLGTDKDGVE-IYLKKGPYGPYIQLGEQEGKVKPKRSPVPASLNQN 699
Query: 1070 SITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEK 1129
ITL+ AL+LL P+ +G H + I++ + G +++ SV K +++L+
Sbjct: 700 DITLDIALKLLSLPLKIGIHKDSDEEIIIGYGKFGPYIKYMGKFISVQKKYDFLNLSLDD 759
Query: 1130 ALEFL 1134
A++ +
Sbjct: 760 AMKLI 764
>gi|329851388|ref|ZP_08266145.1| DNA topoisomerase I [Asticcacaulis biprosthecum C19]
gi|328840234|gb|EGF89806.1| DNA topoisomerase I [Asticcacaulis biprosthecum C19]
Length = 870
Score = 610 bits (1572), Expect = e-171, Method: Compositional matrix adjust.
Identities = 346/793 (43%), Positives = 479/793 (60%), Gaps = 37/793 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VV+VES KAK I YLG Y VL SYGH+RDL ++ GSV+PD+DF+M W++ +
Sbjct: 2 TVVIVESPAKAKTINKYLGKGYTVLASYGHIRDLPSKDGSVKPDEDFAMTWDMDPKSSKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I A+ A+ +ILA+DPDREGEAI+WH++E+L ++ L + + V RV F+ IT++++
Sbjct: 62 LSDIADAVKSADRVILATDPDREGEAISWHVLEVLTKKRVLKDKV-VQRVTFNAITQSAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A+ A RE+D LV+AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL ++ DR
Sbjct: 121 QAAMAAPRELDMELVEAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALKIVVDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F+ +EYWTVE+ + S ++ F A L K+L + + S A
Sbjct: 181 EIEIEKFRTEEYWTVESEV------SAESPPFTARLVQLAGKKLAKFDLNSEVLAHAARD 234
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I +++F + ++ + P P+ TSTLQQ+AA KL FSA+ TM+ AQKLYEGV +
Sbjct: 235 TIQTSSFSIEDVEQKPGRKTPPPPFTTSTLQQEAARKLGFSASRTMQTAQKLYEGVDI-G 293
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I A E R +I ER+G+ + P E PR Y K KNAQEAHEAI
Sbjct: 294 GETTGLITYMRTDGVFIEPNAIAENRRMIGERFGAAYVPAE-PRHYKVKAKNAQEAHEAI 352
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT + R P L L D D +LY LIW RT+A QM+ A V + I ++D+ R++
Sbjct: 353 RPTSMFRRPDTLRHL-DPDQARLYELIWKRTVASQMEAARVENTVISILSSDKQTGLRAT 411
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
+ F G+ A YE E ++ E L +++ G + E++ QH T+
Sbjct: 412 GQVITFDGYLAVYE----------EGKDEVEDEDGGRLPAVRAGTATQVHEIKPAQHFTE 461
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PPARYSE +LVKKLEELGIGRPSTYAS L VL+DR YV + PE +GR+V+AFL
Sbjct: 462 PPARYSEATLVKKLEELGIGRPSTYASILTVLRDRAYVRMDKNRFIPEDKGRLVTAFLDQ 521
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + Y FTAD+E +LD VSAG WK LL D+W+ F + L + QV L +
Sbjct: 522 FFHKYVQYDFTADLEEKLDLVSAGELNWKQLLRDFWTDFHAAADGMTELRVTQVLDTLNE 581
Query: 951 TFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
G +F P+K R+CP C G L K SRFGA FIGC+ +P C + G
Sbjct: 582 ALGPHIF---PDKGDGSNPRACPTCSTGLLSLKTSRFGA--FIGCSNYPECKFTRPV--G 634
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGY-LPKRASVSH 1064
D E + + + D +G P + + V LK G +G YVQLGE + PKR+S+
Sbjct: 635 SPDSEGNSEASGDRD----LGADPETGKMVSLKIGRFGPYVQLGEAESKEDKPKRSSLPK 690
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
+I LE AL+LL P +G +P+DG+PI L R G V T A++ + +
Sbjct: 691 AWPPATIDLERALKLLSLPRTVGVNPEDGKPITAGLGRFGPFVASDGTFANLSGFEEIFE 750
Query: 1125 VTLEKALEFLSGK 1137
V L +A+ ++ K
Sbjct: 751 VGLNRAVTLIAEK 763
>gi|408379523|ref|ZP_11177117.1| DNA topoisomerase I subunit omega [Agrobacterium albertimagni AOL15]
gi|407747007|gb|EKF58529.1| DNA topoisomerase I subunit omega [Agrobacterium albertimagni AOL15]
Length = 899
Score = 610 bits (1572), Expect = e-171, Method: Compositional matrix adjust.
Identities = 339/802 (42%), Positives = 474/802 (59%), Gaps = 35/802 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M WEV +A+
Sbjct: 2 NVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDQDFEMFWEVDTASQKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
++ I A+ ++ L LA+DPDREGEAI+WH++++L+++ + + V RVVF+ IT+ ++
Sbjct: 62 MRDIADAVKSSDGLFLATDPDREGEAISWHVLDLLKKKKVIGDK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMANPRDIDTPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L Q KR+ + S+ + +A I+
Sbjct: 181 ETEIERFVAEEYWNISALLKTPRGDE-----FEARLVSHQGKRMQRNSVTNGDQAAGIKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A F V + + R P+ TSTLQQ A++KL FSA+ TM++AQKLYEG+ +
Sbjct: 236 LLEGAAFAVDSVEAKPVKRNPGPPFTTSTLQQAASSKLGFSASRTMQIAQKLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA + R+ + +++G + PE+ R Y K KNAQEAHEAI
Sbjct: 295 GETVGLITYMRTDGVQMAPEAIEAARAAVLDQFGPRYVPEKA-RLYSTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P L LD D ++LY LIW R +A QM A + + V+I N E R
Sbjct: 354 RPTDFNRSPDKLRRFLDSDQMRLYDLIWKRGIASQMASAEIERTTVEILADNNGEKAGLR 413
Query: 769 SSCSRVEFLGFQAAYEDV-DAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
+ S + F GF AAY D + G ++E+ R L + + L +V QH
Sbjct: 414 AVGSVIRFDGFIAAYTDQREEGEAPEDGDDEDGR------LPEINAREALAKQKVNASQH 467
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TLK L DR YV + R L P +GR+V+AF
Sbjct: 468 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLKTLSDREYVVMDKRKLIPHSKGRLVTAF 527
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L ++F++ +Y FTAD+E +LD +SAG WK +L +W F + + L + V
Sbjct: 528 LENFFNKYVEYDFTADLEEKLDKISAGELNWKDVLRAFWQDFFAQIEDTKELRVTNVLDA 587
Query: 948 LEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
L + +F P ++ R C VCG G L K+ ++GA F+GC+ +P CN+ +
Sbjct: 588 LNEALAPLVF---PKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNFTRQL 642
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
E + +EP+ +G P ++E++ L+SG +G YVQ GE G KR+S+
Sbjct: 643 T-----SEGGAEAEAGGNEPRALGKDPVTEEEITLRSGRFGPYVQRGE---GKEAKRSSL 694
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
I E AL LL P ++G HP+ G+ I L R G V H T A++
Sbjct: 695 PKGWAPADIDFEKALSLLSLPRDVGAHPETGKMISAGLGRYGPFVLHDGTYANLEGIEDV 754
Query: 1123 NDVTLEKALEFLSGKDVRRCGR 1144
+ L +A+ L+ K GR
Sbjct: 755 LSIGLNRAVTVLAEKKANPGGR 776
>gi|354593603|ref|ZP_09011646.1| DNA topoisomerase I [Commensalibacter intestini A911]
gi|353672714|gb|EHD14410.1| DNA topoisomerase I [Commensalibacter intestini A911]
Length = 842
Score = 610 bits (1572), Expect = e-171, Method: Compositional matrix adjust.
Identities = 330/757 (43%), Positives = 462/757 (61%), Gaps = 33/757 (4%)
Query: 391 VRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDA 450
+RPD+DF+M W +K+I AL GA+NL LA+DPDREGEAI+WH+ ML+ +
Sbjct: 1 MRPDEDFAMDWSSDERGTKQIKAISQALKGAKNLYLATDPDREGEAISWHVRAMLEDKKL 60
Query: 451 LHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKL 510
L +NI V RV F+EIT+ +++ A+Q RE+D L++AYLARRALDYL+GF +SP+LWRKL
Sbjct: 61 L-KNINVERVTFNEITKQAVQHAMQNPRELDQPLIEAYLARRALDYLVGFTLSPILWRKL 119
Query: 511 PGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQ 570
PG +SAGRVQS AL LIC+RE EI+ FK +EYWT+ E+ + F A LT FQ
Sbjct: 120 PGSRSAGRVQSVALRLICEREAEIEVFKSKEYWTISGTFLTSENAA-----FTAKLTQFQ 174
Query: 571 SKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLN 629
K+L Q + + A+ + +F V + +R ++NP P + TSTLQQDA+ KL+
Sbjct: 175 GKKLEQFDLNNEELAQQAVNLLQKEHFAV-QAVERKKTKRNPAPPFTTSTLQQDASRKLH 233
Query: 630 FSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAP 689
SA TM+ AQ+LYEGV + G GLITYMRTDG+ +++EA IR I +++G ++ P
Sbjct: 234 MSAQNTMRTAQQLYEGVDV-GGETVGLITYMRTDGVQMANEAITAIRQHIGDKFGDNYLP 292
Query: 690 EEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPA 749
+ PR Y K KNAQEAHEAIRPT+I P ++ L D KLY LIW R +A QMQ A
Sbjct: 293 SK-PRHYTSKAKNAQEAHEAIRPTNISYTPDQVAAYLTPDQKKLYELIWKRAVASQMQSA 351
Query: 750 TVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEEND--RHEAFAI 807
+ Q+ V + N + +FR++ S + F GF Y+D+ +++E D + + +
Sbjct: 352 ELDQVAVTLANPSKEHLFRATGSMIAFDGFLKLYKDI-------VDDQEKDPSKQDISTM 404
Query: 808 LNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNY 867
L S+K G+ + +QH TQPP RYSE SLVKK+EELGIGRPSTYAS L VL+DR Y
Sbjct: 405 LPSMKEGEETQTKAILPEQHFTQPPPRYSEASLVKKMEELGIGRPSTYASILGVLRDREY 464
Query: 868 VTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWS 927
VT+++R P+ RGR+V+AFL+ +F D FTA++E +LD++S T WK +L D+W
Sbjct: 465 VTLENRYFIPQDRGRLVTAFLTSFFKRYVDVDFTANLEEKLDDISDSKTNWKTVLRDFWD 524
Query: 928 RFSSYCTCAQSLHIHQVEKMLEKTFGDSLFA-SLPNKD-RSCPVCGEGTLIFKVSRFGAG 985
FS + L I V L+ G+ FA S D R CP C G L K+ R+GA
Sbjct: 525 DFSKAIEQTKDLKISDVIDALDHDLGNHFFAESTDGSDPRKCPSCDTGKLHLKLGRYGA- 583
Query: 986 YFIGCNQHPRCNYIAKTLY--GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYG 1043
F+GC +P C Y + + +E+DTL+ + + +G+HP + E ++LK GPYG
Sbjct: 584 -FVGCTNYPECQYTRRLGVDGANPEEDDTLKEGS-----RTLGNHPETDEAIVLKRGPYG 637
Query: 1044 FYVQLGE---DRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRL 1100
Y+Q GE + PKRA++ D ++ITL+DA+ LL P LG +P G+ I L
Sbjct: 638 LYIQCGEADPENKKKKPKRATIPKGMDGNAITLQDAVGLLSLPRTLGEYPTTGEAIQAGL 697
Query: 1101 ARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGK 1137
G ++ AS+ K V L +ALE + K
Sbjct: 698 GPFGPYIKVGNIFASLDKTDNVLTVDLPRALEVVEKK 734
>gi|417093793|ref|ZP_11957725.1| DNA topoisomerase I protein [Rhizobium etli CNPAF512]
gi|327194843|gb|EGE61677.1| DNA topoisomerase I protein [Rhizobium etli CNPAF512]
Length = 884
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 339/805 (42%), Positives = 483/805 (60%), Gaps = 30/805 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M+WEV A+
Sbjct: 2 NVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDGASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH+++ML ++ L+ +V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSSDGLFLATDPDREGEAISWHVLDMLNKKRVLNGK-SVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMADPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +IG+ +A ++
Sbjct: 181 ESEIERFISEEYWNLSALLKTPRGDE-----FEARLVSANGKRLPPRAIGNGEDAGRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A++ ++ + V++NP P+ TSTLQQ A++ L FSA+ TM++AQKLYEGV +
Sbjct: 236 LLEGASY-IVDTVEAKPVKRNPGPPFTTSTLQQAASSNLGFSASRTMQIAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R I +++G + PE+ R Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARRAILDQFGERYLPEKA-RFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P L LD D ++LY LIW R +A QM A + + +I N E
Sbjct: 353 IRPTDFYRSPDRLRKFLDADQIRLYELIWKRGIASQMASAEIERTTAEITADNKGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAIGSVIRFDGFIAAYTD------QKEDGEQSDDGDEDGRLPEINARETLAKQKINSTQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TL L+DR+YVT+ R L P+ +GR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLATLRDRDYVTIDKRKLIPQAKGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTAD+E +LD +SAG WK +L D+W F + + L + V
Sbjct: 527 LESFFTKYVEYDFTADLEEKLDRISAGELNWKQVLRDFWKDFFAQIEDTKELRVTNVLDS 586
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L + +F + R C VCG G L K+ ++GA F+GC+ +P CNY + L
Sbjct: 587 LNEALAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNY-TRQLSS 643
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
++ E ++EPK +G P + E++ L+SG +G Y+Q G+ G KRAS+
Sbjct: 644 ENGGE---TEGGALNEPKNLGTDPTTGEELTLRSGRFGPYIQRGD---GKEAKRASLPKG 697
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ I E A+ L+ P ++G HP+ G+ I + R G + H + A++ V
Sbjct: 698 WKPEDIDYEKAMALISLPRDIGKHPETGKMISSGIGRYGPFLLHDGSYANLETVEDVFSV 757
Query: 1126 TLEKALEFLSGKDVRRCGR-PKGKP 1149
L +A+ ++ K + GR +G P
Sbjct: 758 GLNRAVTVIAEKANQAPGRGARGTP 782
>gi|114799315|ref|YP_760971.1| DNA topoisomerase I [Hyphomonas neptunium ATCC 15444]
gi|114739489|gb|ABI77614.1| DNA topoisomerase I [Hyphomonas neptunium ATCC 15444]
Length = 859
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 330/802 (41%), Positives = 474/802 (59%), Gaps = 49/802 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+VVVES KAK I YLG Y+VL SYGH+RDL +++GSV P++DF MVWE S + +
Sbjct: 3 LVVVESPAKAKTINKYLGKDYKVLASYGHIRDLPSKNGSVDPENDFEMVWEADSKSAKRI 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I AL A+ LILA+DPDREGEAI+WH+VE L+++ AL +++ + RVVF+ IT++++
Sbjct: 63 SDIANALKDADTLILATDPDREGEAISWHLVEALRKRRALKKDVAIERVVFNAITKSAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R IDA LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL ++CDRE
Sbjct: 123 QAMEHPRAIDAELVDAYLARRALDYLVGFNLSPVLWRKLPGSRSAGRVQSVALRIVCDRE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+ QEYW + A E + D +F A L + L + ++G+ +A +
Sbjct: 183 NEIESFRAQEYWNIVA-----ELRAPDGTAFEARLHSLDGETLKKFTLGNQGDANRALEI 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V+ + + R P P+ITSTLQQ+A+ KL F+A TM+ AQKLYE
Sbjct: 238 VKVGGYSVVSVEAKPVKRNPPPPFITSTLQQEASRKLGFNAKRTMQAAQKLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G ITYMRTDG+++++EA R++I YG+ + P E R+Y K KNAQEAHEAIR
Sbjct: 291 --EGRITYMRTDGVNMAEEAYVAARTMIQSNYGARYLP-ENTRRYSSKAKNAQEAHEAIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD P G D D KLY+L+W R +A QM+ A + +D+ + D+ R++
Sbjct: 348 PTDFNLRPEDYHG--DGDLKKLYTLVWRRAVASQMETALFERTTIDLASKDKRAGLRATG 405
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
+ F GF Y + + E L + G L + + Q TQP
Sbjct: 406 QVLVFDGFIKLYTEGHDAGDDDDDAEGR--------LPKMAEGQHADLLKADANQSFTQP 457
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E SLVK+LEELGIGRPSTYAST+ L+DR YV ++ + L PE +GR+V+AFL ++
Sbjct: 458 PPRYTEASLVKRLEELGIGRPSTYASTMSTLEDRGYVRIEGKALVPEDKGRLVTAFLENF 517
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
FS +Y FTA +E +LD +S G +WK L ++W +F++ + L + V L +
Sbjct: 518 FSRYVEYDFTAGLEEKLDVISDGKLDWKAFLREFWQQFAADIDGTKDLRVSAVLDALNEA 577
Query: 952 FGDSLFASLPNKD---------RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
G +F P +D R CP+C EG L K+ +FGA F+GC++HP C Y +
Sbjct: 578 LGAYVF---PRQDAEGNPIENPRQCPLCKEGELSMKLGKFGA--FVGCSRHPECKYTRQ- 631
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
+ + + + + N IG HP + +LLKSG +G YV++ G PKRAS+
Sbjct: 632 -FSSEGGDAAINPDGNE-----IGIHPDTGAMILLKSGRFGPYVEMA---NGEKPKRASL 682
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+ + +TLE A+ELL P +G HP+DG+ I+ R G V+H +T A++
Sbjct: 683 AKADNAAELTLERAVELLSLPREVGPHPEDGEMILANFGRFGPYVQHGKTYANLKDPRDV 742
Query: 1123 NDVTLEKALEFLSGKDVRRCGR 1144
+ + A+ + K R R
Sbjct: 743 FTIGVNHAVSLIEDKKARGSAR 764
>gi|420243244|ref|ZP_14747190.1| DNA topoisomerase I, bacterial, partial [Rhizobium sp. CF080]
gi|398062798|gb|EJL54564.1| DNA topoisomerase I, bacterial, partial [Rhizobium sp. CF080]
Length = 785
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 342/812 (42%), Positives = 486/812 (59%), Gaps = 42/812 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M+WEV A+
Sbjct: 2 NVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDPASQKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ G++ + LA+DPDREGEAI+WH++++L+++ + + V RVVF+ IT+ ++
Sbjct: 62 MKDISDAVKGSDAVFLATDPDREGEAISWHVLDLLRKKKVIGDK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ + R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMASPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL SI + +A ++
Sbjct: 181 ESEIERFVSEEYWNLSALLRTPRGDE-----FEARLVSADGKRLQGRSIKNGEDANRLKT 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++ A + ++ + V++NP P+ TSTLQQ A++ + F+A+ TM++AQKLYEGV +
Sbjct: 236 LLDGATY-LVDTVEAKPVKRNPGPPFTTSTLQQAASSNIGFNASRTMQVAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA RS I ++G + PE+ PR Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARSAIVGQFGQRYLPEK-PRFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D +LY LIW R +A QM A + + VDI N E
Sbjct: 353 IRPTDFNRTPDQVRRYLDADQARLYELIWKRGIASQMASAEIERTTVDILADNKGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AY D A + ++++E+ R L + + L +V QH
Sbjct: 413 RAVGSVIRFDGFLGAYVDSREDAEKSEDDDEDGR------LPEINAREKLDKNKVNASQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TLK L DR YVT+ R L P +GR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLKTLSDREYVTMDKRKLIPHSKGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTAD+E +LD +SAG +WK +L ++W F + + L + V
Sbjct: 527 LESFFTKYVEYDFTADLEEKLDKISAGELDWKQVLREFWQDFFAQIEDTKELRVTNVLDA 586
Query: 948 LEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK- 1001
L +T +F P ++ R C VCG G L K+ ++GA F+GC+ +P CN+ +
Sbjct: 587 LNETLAPLVF---PKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPDCNFTRQL 641
Query: 1002 -TLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRA 1060
+ G D E + L EPK +G P + E++ L+SG +G Y+Q G+ G KR+
Sbjct: 642 SSEGGADAEANALS------EPKALGADPHTGEELTLRSGRFGPYIQRGD---GKEAKRS 692
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
S+ + I E AL L+ P ++G HP+ + I L R G + H + A++
Sbjct: 693 SLPKGWKPEDIDHEKALALINLPRDVGKHPESAKMISAGLGRYGPFLLHDGSYANLESIE 752
Query: 1121 KPNDVTLEKALEFLSGKDVRRC---GRPKGKP 1149
+ L +A+ L+ K + GR +G P
Sbjct: 753 DVFSIGLNRAVTVLAEKQSKVAAGGGRTRGAP 784
>gi|424910161|ref|ZP_18333538.1| DNA topoisomerase I, bacterial [Rhizobium leguminosarum bv. viciae
USDA 2370]
gi|392846192|gb|EJA98714.1| DNA topoisomerase I, bacterial [Rhizobium leguminosarum bv. viciae
USDA 2370]
Length = 894
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 335/799 (41%), Positives = 477/799 (59%), Gaps = 30/799 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M WEV SA+
Sbjct: 2 NVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLPAKDGSVLPDQDFEMSWEVDSASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH++++L+++ L + V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSSDGLFLATDPDREGEAISWHVLDLLKKKRVLGDK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMANPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +I + +A ++
Sbjct: 181 ESEIERFVSEEYWNISALLKTPRGDE-----FEARLVSADGKRLQNRAIKTGDDANRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A + V+ + + V++NP+P + TSTLQQ A++++ F A+ TM++AQKLYEG+ +
Sbjct: 236 LLEGATY-VVDSVEAKPVKRNPSPPFTTSTLQQAASSRMGFGASRTMQVAQKLYEGIDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R I E++G + PE+ R Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARKAIGEQFGGRYVPEKA-RFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D L+LY LIW R +A QM A + + V+I N E
Sbjct: 353 IRPTDFNRTPDQVKRYLDADQLRLYELIWKRGIASQMASAEIERTTVEILASNGGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDDEGRLPPINERENLAKQKINASQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TLK L DR Y+ + R L P RGR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLKTLSDREYIVIDKRKLVPHSRGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTA +E +LD +SAG +WK +L D+W F + + L + V
Sbjct: 527 LESFFTKYVEYDFTAALEEKLDRISAGELDWKQVLRDFWKDFFAQIEDTKELRVTNVLDA 586
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L + +F + R C VCG G L K+ ++GA F+GC+ +P CNY + L
Sbjct: 587 LNEVLAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNY-TRQLTS 643
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
D + ++EPK +G P + E++ L+SG +G Y+Q G+ G KR+S+
Sbjct: 644 D----GAVAEAAALNEPKALGADPMTGEELTLRSGRFGPYIQRGD---GKEAKRSSLPKG 696
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ I E AL L+ P ++G HP+ G+ I L R G + H + A++ +
Sbjct: 697 WKPEDIDHEKALALINLPRDIGKHPETGKMISAGLGRYGPFLLHDGSYANLESIEDVFSI 756
Query: 1126 TLEKALEFLSGKDVRRCGR 1144
L +A+ ++ K + GR
Sbjct: 757 GLNRAVTVIAEKQSKGPGR 775
>gi|15888629|ref|NP_354310.1| DNA topoisomerase I [Agrobacterium fabrum str. C58]
gi|335035063|ref|ZP_08528406.1| DNA topoisomerase I [Agrobacterium sp. ATCC 31749]
gi|15156355|gb|AAK87095.1| DNA topoisomerase I [Agrobacterium fabrum str. C58]
gi|333793494|gb|EGL64848.1| DNA topoisomerase I [Agrobacterium sp. ATCC 31749]
Length = 892
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 338/799 (42%), Positives = 473/799 (59%), Gaps = 30/799 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M WEV SA+
Sbjct: 2 NVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLPAKDGSVLPDQDFEMSWEVDSASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH++++L+++ L + V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSSDGLFLATDPDREGEAISWHVLDLLKKKRVLGDK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMANPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL I + +A ++
Sbjct: 181 ESEIERFVSEEYWNISALLKTPRGDE-----FEAKLVSADGKRLQSRGIKTGEDANRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A + V+ + V++NP P+ TSTLQQ A++++ F A+ TM++AQKLYEG+ +
Sbjct: 236 LLEGATY-VVDTVEAKPVKRNPGPPFTTSTLQQAASSRMGFGASRTMQVAQKLYEGIDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ I+ EA R I E++G + PE+ R Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQIAPEAIDAARLAIGEQFGERYVPEKA-RFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D L+LY LIW R +A QM A + + V+I E
Sbjct: 353 IRPTDFTRTPDQVKRYLDADQLRLYDLIWKRGIASQMASAEIERTTVEILADKNGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDDEGRLPQINARENLAKQKINASQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TLK L DR Y+ + R L P RGR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLKTLSDREYIVIDKRKLIPHSRGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTA +E +LD +SAG +WK +L D+W F + + L + V
Sbjct: 527 LESFFTKYVEYDFTAALEEKLDRISAGELDWKQVLRDFWKDFFAQIEDTKELRVTNVLDA 586
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L + +F + R C VCG G L K+ ++GA F+GC+ +P CNY + L
Sbjct: 587 LNEVLAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNY-TRQLTS 643
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
D E D N EPK +G P + E++ L+SG +G Y+Q G+ G KR+S+
Sbjct: 644 DGAEADAAASN----EPKALGADPMTGEELTLRSGRFGPYIQRGD---GKEAKRSSLPKG 696
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ I E AL L+ P ++G HP+ G+ I L R G + H + A++ +
Sbjct: 697 WKPEDIDHEKALALINLPRDIGKHPETGKMISAGLGRYGPFLLHDGSYANLESIEDVFSI 756
Query: 1126 TLEKALEFLSGKDVRRCGR 1144
L +A+ ++ K + GR
Sbjct: 757 GLNRAVTVIAEKQAKGPGR 775
>gi|424890815|ref|ZP_18314414.1| DNA topoisomerase I, bacterial [Rhizobium leguminosarum bv. trifolii
WSM2012]
gi|393173033|gb|EJC73078.1| DNA topoisomerase I, bacterial [Rhizobium leguminosarum bv. trifolii
WSM2012]
Length = 884
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 339/811 (41%), Positives = 485/811 (59%), Gaps = 30/811 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M+WEV SA+
Sbjct: 2 NVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDSASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ +++L LA+DPDREGEAI+WH+++ML ++ L+ V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSSDSLFLATDPDREGEAISWHVLDMLNKKRVLNGK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMADPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +IG+ EA ++
Sbjct: 181 ESEIERFISEEYWNISALLKTPRGDE-----FEARLVSANGKRLQPRAIGNGEEAGRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++ A++ ++ + V++NP P+ TSTLQQ A++ FSA+ TM++AQKLYEGV +
Sbjct: 236 LLDGASY-IVDTVEAKPVKRNPGPPFTTSTLQQAASSNPGFSASRTMQVAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R I +++G + PE+ R Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARRAIVDQFGERYMPEKA-RFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D ++LY LIW R +A QM A + + +I N E
Sbjct: 353 IRPTDFDRTPDRVRKFLDADQIRLYDLIWKRGIASQMASAEIERTTAEITADNKGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDEDGRLPEINARENLAKQKINSTQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TL L+DR+YVT+ R L P+ +GR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLATLRDRDYVTIDKRKLIPQAKGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTA +E +LD +SAG WK +L D+W F + + L + V
Sbjct: 527 LESFFTKYVEYDFTAALEEKLDRISAGELNWKQVLRDFWKDFFAQIEDTKELRVTNVLDS 586
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L + +F + R C VCG G L K+ ++GA F+GC+ +P CNY +
Sbjct: 587 LNEALAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNYTRQLSSE 644
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+ E D ++EPK +G P + E++ L+SG +G Y+Q G+ G KRAS+
Sbjct: 645 NGGEAD----GAALNEPKNLGTDPTTGEELTLRSGRFGPYIQRGD---GKEAKRASLPKG 697
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ I E A+ L+ P ++G HP+ G+ I + R G + H + A++ V
Sbjct: 698 WKPEDIDYEKAMALISLPRDIGKHPESGKMISSGIGRYGPFLLHDGSYANLETIEDVFSV 757
Query: 1126 TLEKALEFLSGKDVRRCGR-PKGKPKREEAL 1155
L +A+ ++ + + GR +G P +AL
Sbjct: 758 GLNRAVTVIAERANQAPGRGSRGTPAALKAL 788
>gi|58696782|ref|ZP_00372316.1| DNA topoisomerase I [Wolbachia endosymbiont of Drosophila simulans]
gi|225630766|ref|YP_002727557.1| DNA topoisomerase I [Wolbachia sp. wRi]
gi|58537023|gb|EAL60165.1| DNA topoisomerase I [Wolbachia endosymbiont of Drosophila simulans]
gi|225592747|gb|ACN95766.1| DNA topoisomerase I [Wolbachia sp. wRi]
Length = 816
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 326/776 (42%), Positives = 475/776 (61%), Gaps = 42/776 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++++VES KAK I YLG ++V S+GHVRDL A++GSV PD+DF++ +E A +
Sbjct: 2 ALLIVESPAKAKTIGKYLGKEFKVAASFGHVRDLPAKNGSVDPDNDFAIKYETIEKAEKY 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K + A S ++ LA+DPDREGEA+AWH++E L+++ A+ + RVVF+EIT+ ++
Sbjct: 62 IKELVKAASKTSDIYLATDPDREGEAMAWHVIETLKEKKAISNENNIYRVVFNEITKRAV 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A++ REI+ +LV+A ARRALDYL+GF++SPLLW KL G +SAGRVQS AL +IC+R
Sbjct: 122 QEAIKNPREINMDLVRAQQARRALDYLVGFSLSPLLWTKLSGSKSAGRVQSVALKIICER 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI +F QEYW+++A + + +F A L+H+ +K+L + I + EAK++ +
Sbjct: 182 EDEISKFITQEYWSIKAEMQNSKDE-----AFFAMLSHYDNKKLEKFDIKNEEEAKNLVR 236
Query: 591 KINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I S + V +R V++NP P+ITS+LQQDA NKL F+ M++AQ LYEG+ +
Sbjct: 237 EIESRQYAV-STVERKQVKRNPLPPFITSSLQQDAVNKLYFNVKSVMRIAQNLYEGIDI- 294
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG HI+DEA IR I YG + P + PRKY KKVKNAQEAHEA
Sbjct: 295 GGETVGLITYMRTDGFHIADEAINSIRGSIKSLYGDKYLP-QSPRKYVKKVKNAQEAHEA 353
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPTDI R P + L + KLY LIW RT+A QM+ A + Q+ V+I + D+ +V R+
Sbjct: 354 IRPTDINRTPGSIKDYLTPEQFKLYDLIWKRTIASQMESAILDQVVVEISSTDQKVVLRA 413
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S S + F GF Y+D N E +L ++K G+ L VE KQH T
Sbjct: 414 SGSSIFFDGFYRVYQD-------------NMEAENEGLLPAMKEGEACKLISVEPKQHFT 460
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RYSE S+VKK+EE+GIGRPSTYA+ + VLQDR YV++ S+ P RG++V+ FL
Sbjct: 461 QPPPRYSEASIVKKMEEIGIGRPSTYATIISVLQDREYVSLDSKRFIPSSRGKIVTIFLE 520
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F +Y FTA ME +LD +S G +WK L +W F + + + +V +
Sbjct: 521 TFFQRCVEYDFTAQMEEKLDLISNGHADWKKELGHFWVPFFGHVNSVKQMTHDEVFSGIH 580
Query: 950 KTFGDSLFASLPNKDRS--CPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
D + K+ + CP C G I K++ AG F+GC+ +P CN+ K + G +
Sbjct: 581 NLVVDWFCSEEGRKEVNTKCPACLGG--ILKLNFGKAGVFLGCSNYPECNH-TKEITGSN 637
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKD 1067
D N + PK +G + ++V++K GP+G Y++ + L K+ +VS KD
Sbjct: 638 D---------NSEYPKSLGVDGITNQEVMIKKGPFGLYLEFNNE----LKKKKTVSIPKD 684
Query: 1068 --VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
V+ I L A +LL P +G HP+ G+ + + L R G+ + + S+ K+ K
Sbjct: 685 INVNEIDLSTATQLLSLPKVIGEHPETGKEVKIGLGRFGYYIFYDGKYFSLKKSSK 740
>gi|408786007|ref|ZP_11197747.1| DNA topoisomerase I subunit omega [Rhizobium lupini HPC(L)]
gi|408488196|gb|EKJ96510.1| DNA topoisomerase I subunit omega [Rhizobium lupini HPC(L)]
Length = 894
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 335/799 (41%), Positives = 477/799 (59%), Gaps = 30/799 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M WEV SA+
Sbjct: 2 NVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLPAKDGSVLPDQDFEMSWEVDSASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH++++L+++ L + V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSSDGLFLATDPDREGEAISWHVLDLLKKKRVLGDK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMANPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L + F A L KRL +I + +A ++
Sbjct: 181 ESEIERFVSEEYWNISALLKTPRADE-----FEARLVSADGKRLQNRAIKTGDDANRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A + V+ + + V++NP+P + TSTLQQ A++++ F A+ TM++AQKLYEG+ +
Sbjct: 236 LLEGATY-VVDSVEAKPVKRNPSPPFTTSTLQQAASSRMGFGASRTMQVAQKLYEGIDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R I E++G + PE+ R Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARKAIGEQFGDRYVPEKA-RFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D L+LY LIW R +A QM A + + V+I N E
Sbjct: 353 IRPTDFNRTPDQVKRYLDADQLRLYELIWKRGIASQMASAEIERTTVEILASNGGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDDEGRLPPINERENLAKQKINASQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TLK L DR Y+ + R L P RGR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLKTLSDREYIVIDKRKLVPHSRGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTA +E +LD +SAG +WK +L D+W F + + L + V
Sbjct: 527 LESFFTKYVEYDFTAALEEKLDRISAGELDWKQVLRDFWKDFFAQIEDTKELRVTNVLDA 586
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L + +F + R C VCG G L K+ ++GA F+GC+ +P CNY + L
Sbjct: 587 LNEVLAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNY-TRQLTS 643
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
D ++EPK +G P + E++ L+SG +G Y+Q G+ G KR+S+
Sbjct: 644 D----GAEAEAAALNEPKALGADPMTGEELTLRSGRFGPYIQRGD---GKEAKRSSLPKG 696
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ I E AL L+ P ++G HP+ G+ I L R G + H + A++ +
Sbjct: 697 WKPEDIDHEKALALINLPRDIGKHPETGKMISAGLGRYGPFLLHDGSYANLESIEDVFSI 756
Query: 1126 TLEKALEFLSGKDVRRCGR 1144
L +A+ ++ K + GR
Sbjct: 757 GLNRAVTVIAEKQSKGPGR 775
>gi|417860246|ref|ZP_12505302.1| DNA topoisomerase I [Agrobacterium tumefaciens F2]
gi|338823310|gb|EGP57278.1| DNA topoisomerase I [Agrobacterium tumefaciens F2]
Length = 894
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 339/799 (42%), Positives = 474/799 (59%), Gaps = 30/799 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M WEV SA+
Sbjct: 2 NVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDQDFEMSWEVDSASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH++++L+++ L + V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSSDGLFLATDPDREGEAISWHVLDLLKKKRVLGDK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMANPRDIDIPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL SI + +A ++
Sbjct: 181 ESEIERFVSEEYWNISALLKTPRGDE-----FEAKLVSADGKRLQSRSIKTGEDANRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A + V+ + V++NP P+ TSTLQQ A++++ FSA+ TM++AQKLYEG+ +
Sbjct: 236 LLEGATY-VVDTVEAKPVKRNPGPPFTTSTLQQAASSRMGFSASRTMQVAQKLYEGIDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R I E++G + PE+ R Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARRAIGEQFGDRYVPEKA-RFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D L+LY LIW R +A QM A + + V+I E
Sbjct: 353 IRPTDFNRTPDQVKRYLDADQLRLYDLIWKRGIASQMASAEIERTTVEILADKNGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDDEGRLPQINARENLAKQKINASQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TLK L DR Y+ V R L P RGR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLKTLSDREYIIVDKRKLIPHSRGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +FS+ +Y FTA +E +LD +SAG +WK +L D+W F + + L + V
Sbjct: 527 LESFFSKYVEYDFTAALEEKLDRISAGELDWKQVLRDFWKDFFAQIEDTKELRVTNVLDA 586
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L + +F + R C VCG G L K+ ++GA F+GC+ +P CNY + L
Sbjct: 587 LNEVLAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNY-TRQLTS 643
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
D E + N EPK +G P + E++ L+SG +G Y+Q G+ G KR+S+
Sbjct: 644 DGSEAEAAASN----EPKALGADPMTGEELTLRSGRFGPYIQRGD---GKEAKRSSLPKG 696
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ I E AL L+ P ++G HP+ + I L R G + H + A++ +
Sbjct: 697 WKPEDIDHEKALALINLPRDIGKHPETAKMISAGLGRYGPFLLHDGSYANLESIEDVFSI 756
Query: 1126 TLEKALEFLSGKDVRRCGR 1144
L +A+ ++ K + GR
Sbjct: 757 GLNRAVTVIAEKQSKGPGR 775
>gi|296445281|ref|ZP_06887240.1| DNA topoisomerase I [Methylosinus trichosporium OB3b]
gi|296257236|gb|EFH04304.1| DNA topoisomerase I [Methylosinus trichosporium OB3b]
Length = 968
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 331/796 (41%), Positives = 485/796 (60%), Gaps = 36/796 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KA+ I YLG + VL YGHVRDL + GSV P +DF+M WE + +
Sbjct: 2 NLVIVESAAKAQTINKYLGRDFNVLACYGHVRDLPPKDGSVDPAEDFAMKWESDAKSAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +I A+ A+ +ILA+DPDREGEAI+WH++++L+++ AL+ +V RVVF+ +T+ +I
Sbjct: 62 ISAIADAVKSADKVILATDPDREGEAISWHLLDILKKKKALNGK-SVERVVFNAVTKDAI 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A+ REID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 KHAMAHPREIDQALVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F +EYW++ A L K F A L+ K++ +L IGS EA+D ++
Sbjct: 181 ELEIEKFVTREYWSLIAHLKTKAGEP-----FTARLSGADGKKITRLDIGSGQEAEDFKK 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ +A+F I++ + V+++P P+ TSTLQQ+A+ KL + TM++AQ+LYEGV +
Sbjct: 236 ALETASF-TIRSVEAKPVKRHPYAPFTTSTLQQEASRKLGLAPAQTMRIAQRLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G AGLITYMRTDG+ ++ EA R +I + YG P+ PRKY K KNAQEAHEA
Sbjct: 294 GGETAGLITYMRTDGVDMAPEAIASARKVIAKEYGERFVPK-APRKYTVKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI----GNADESI 765
IRPTD+ RLP ++ L+ + KLY LIW+RT+A QM+ A + + VDI G D +
Sbjct: 353 IRPTDLSRLPKQMAKHLEPEQAKLYELIWTRTIASQMESAELERTTVDIDAKAGKRD--L 410
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
R++ V F GF Y+ E ++D E L ++ G+P +++
Sbjct: 411 ELRATGQVVRFSGFLELYQ----------EGRDDDADEDGGRLPPMQPGEPATREKIDAS 460
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PP RY+E +LVK++EELGIGRPSTYASTL VL++R+YV + + L PE +GR+V+
Sbjct: 461 QHFTEPPPRYTEATLVKRMEELGIGRPSTYASTLAVLRERDYVRLDKKRLVPEDKGRIVT 520
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
AFL +F+ ++ FTA +E +LD VS +WK +L D+W+ FS + L QV
Sbjct: 521 AFLESFFTRYVEFDFTAGLEEKLDKVSNNEIDWKEVLRDFWADFSGAVDGTKELRTTQVL 580
Query: 946 KMLEKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
L G +F + + R+CP C G L K+ +FGA FIGC+ +P C +
Sbjct: 581 DSLNDLLGPHIFPAKADGSNPRACPACSAGQLSLKLGKFGA--FIGCSNYPECRFTRTLS 638
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYL-PKRASV 1062
D + + V +G P S ++ L+ G +G YVQ GE PKR+S+
Sbjct: 639 PPTGDAAEGARPGVRV-----LGQDPESGAEITLRDGRFGTYVQEGEAAEEGEKPKRSSI 693
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
D +TLE A+ LL P + HP+ G+PI+ + R G V+H +T A++ K+
Sbjct: 694 PKTIRPDELTLEQAIRLLSLPREVAKHPESGEPIVAGVGRFGPYVQHGKTYANLGKDDDI 753
Query: 1123 NDVTLEKALEFLSGKD 1138
+ +A++ + K+
Sbjct: 754 LSIGGNRAIDLIVTKE 769
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 18/127 (14%)
Query: 1020 DEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALEL 1079
D + +G HP V +KSG +G YV G+ A+++ D S+TLE A+EL
Sbjct: 782 DPGRALGDHPQGG-AVTVKSGRFGPYVNWGK-------INATIAKATDPASLTLEQAVEL 833
Query: 1080 LRYPVN---------LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
L + LG HP G I LR + G V + A++PK+M P DVTL++A
Sbjct: 834 LAAKASGGPSGGGRVLGEHPSGGA-ITLRDGKYGPYVNLGKVNATLPKDMSPEDVTLDEA 892
Query: 1131 LEFLSGK 1137
+ + K
Sbjct: 893 IRLIEEK 899
>gi|325292665|ref|YP_004278529.1| DNA topoisomerase I [Agrobacterium sp. H13-3]
gi|325060518|gb|ADY64209.1| DNA topoisomerase I [Agrobacterium sp. H13-3]
Length = 905
Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust.
Identities = 336/799 (42%), Positives = 478/799 (59%), Gaps = 30/799 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M WEV SA+
Sbjct: 13 NVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDQDFEMSWEVDSASAKR 72
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH++++L+++ L + V RVVF+ IT+ ++
Sbjct: 73 MKDIADAVKSSDGLFLATDPDREGEAISWHVLDLLKKKRVLGDK-PVKRVVFNAITKKAV 131
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS +L L+CDR
Sbjct: 132 LDAMANPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVSLRLVCDR 191
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L K+L SI + +A ++
Sbjct: 192 EAEIERFVSEEYWNISALLKTPRGDE-----FEAKLVSADGKKLQGRSIKTGDDANRLKA 246
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A + ++ + V++NP P+ TSTLQQ A++++ FSA+ TM++AQKLYEG+ +
Sbjct: 247 LLEGATY-IVDTVEAKPVKRNPGPPFTTSTLQQAASSRMGFSASRTMQVAQKLYEGIDI- 304
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R I E++G + PE+ R Y K KNAQEAHEA
Sbjct: 305 GGETVGLITYMRTDGVQMAPEAIDAARRAIGEQFGDRYVPEKA-RFYSTKAKNAQEAHEA 363
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI-GNAD-ESIVF 767
IRPTD R P + LD D L+LY LIW R +A QM A + + V+I + D E
Sbjct: 364 IRPTDFNRTPDQVKRYLDADQLRLYDLIWKRGIASQMASAEIERTTVEILADKDGEKAGL 423
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 424 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDDEGRLPQINARENLAKQKINASQH 477
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TLK L DR Y+ + R L P RGR+V+AF
Sbjct: 478 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLKTLSDREYIIIDKRKLIPHSRGRLVTAF 537
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTAD+E +LD +SAG +WK +L D+W F + + L + V
Sbjct: 538 LESFFAKYVEYDFTADLEEKLDRISAGELDWKQVLRDFWKDFFAQIEDTKELRVTNVLDA 597
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L + +F + R C VCG G L K+ ++GA F+GC+ +P CN+ + L
Sbjct: 598 LNEVLAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNF-TRQLTS 654
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
D E + N EPK +G P + E++ L+SG +G Y+Q G+ G KR+S+
Sbjct: 655 DGSEAEASVSN----EPKALGADPMTGEELTLRSGRFGPYIQRGD---GKEAKRSSLPKG 707
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ I E AL L+ P ++G HP+ G+ I L R G + H + A++ +
Sbjct: 708 WKPEEIDHEKALALINLPRDIGKHPETGKMISAGLGRYGPFLLHDGSYANLESIEDVFSI 767
Query: 1126 TLEKALEFLSGKDVRRCGR 1144
L +A+ ++ K + GR
Sbjct: 768 GLNRAVTVIAEKQSKGPGR 786
>gi|418296110|ref|ZP_12907954.1| DNA topoisomerase I subunit omega [Agrobacterium tumefaciens
CCNWGS0286]
gi|355539542|gb|EHH08780.1| DNA topoisomerase I subunit omega [Agrobacterium tumefaciens
CCNWGS0286]
Length = 894
Score = 607 bits (1565), Expect = e-170, Method: Compositional matrix adjust.
Identities = 338/799 (42%), Positives = 476/799 (59%), Gaps = 30/799 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M WEV SA+
Sbjct: 2 NVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDQDFEMSWEVDSASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH++++L+++ L + V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSSDGLFLATDPDREGEAISWHVLDLLKKKRVLGDK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMANPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +I + +A ++
Sbjct: 181 ESEIERFVSEEYWNISALLKTPRGDE-----FEAKLVSADGKRLQNRAIKTGEDANRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A + V+ + + V++NP P+ TSTLQQ A++++ FSA+ TM++AQKLYEG+ +
Sbjct: 236 LLEGATY-VVDSVEAKPVKRNPGPPFTTSTLQQAASSRMGFSASRTMQVAQKLYEGIDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R I E++G + PE+ R Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARLAIGEQFGDRYVPEKA-RFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P + LD D L+LY LIW R +A QM A + + V+I E
Sbjct: 353 IRPTDFNRTPDQVKRYLDPDQLRLYDLIWKRGIASQMASAEIERTTVEILADKNGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDDEGRLPPINERENLAKQKINASQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TLK L DR Y+ V R L P RGR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLKTLSDREYIVVDKRKLIPHSRGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTA +E +LD +SAG +WK +L D+W F + + L + V
Sbjct: 527 LESFFTKYVEYDFTAALEEKLDRISAGELDWKQVLRDFWKDFFAQIEDTKELRVTNVLDA 586
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L + +F + R C VCG G L K+ ++GA F+GC+ +P CNY + L
Sbjct: 587 LNEVLAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNY-TRQLTS 643
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
D E + N EPK +G P + E++ L+SG +G Y+Q G+ G KR+S+
Sbjct: 644 DGSEAEAAASN----EPKALGADPMTGEELTLRSGRFGPYIQRGD---GKEAKRSSLPKG 696
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ I E AL L+ P ++G HP+ G+ I L R G + H + A++ +
Sbjct: 697 WKPEDIDHEKALALINLPRDIGKHPETGKMISAGLGRYGPFLLHDGSYANLESIEDVFAI 756
Query: 1126 TLEKALEFLSGKDVRRCGR 1144
L +A+ ++ K + GR
Sbjct: 757 GLNRAVTVIAEKQSKGPGR 775
>gi|386402387|ref|ZP_10087165.1| DNA topoisomerase I, bacterial [Bradyrhizobium sp. WSM1253]
gi|385743013|gb|EIG63209.1| DNA topoisomerase I, bacterial [Bradyrhizobium sp. WSM1253]
Length = 914
Score = 607 bits (1564), Expect = e-170, Method: Compositional matrix adjust.
Identities = 335/809 (41%), Positives = 488/809 (60%), Gaps = 42/809 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL S+GHVRDL A++GSV PD +F M+WE+ A
Sbjct: 2 NIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDANFKMIWEIDPKAAGR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I +L A+ LILA+DPDREGEAI+WH++E+L+++ AL ++ + RVVF+ IT+ ++
Sbjct: 62 LNDIAKSLKNADRLILATDPDREGEAISWHVLEVLKEKRALKDH-KIERVVFNAITKQAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 TDAMKHPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F +EYW++ A L + F A L K++ +L IG+ EA+D ++
Sbjct: 181 ELEIEKFVAREYWSLIATLLTPRGDA-----FEARLVGADGKKIQRLDIGTGAEAEDFKK 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +A++ V + R P+ TSTLQQ+A+ K F+ +TM++AQ+LYEG+ +
Sbjct: 236 ALEAASYAVTTVDAKPARRNPQAPFTTSTLQQEASRKYGFAPAHTMRIAQRLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I A + R +I E YG+ + P+ PR+Y K KNAQEAHEAI
Sbjct: 295 GETTGLITYMRTDGVQIDPSAITQARKVIGEDYGNAYVPDS-PRQYQAKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFR 768
RPTD+ R P +S L+ D +LY LIW RT+A QM+ A + + VDI ++ R
Sbjct: 354 RPTDMSRRPDSMSRKLESDQARLYELIWKRTIASQMESAELERTTVDITAKVGGRTLDLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ V+F GF A Y+ E +++ E L ++ D L + + QH
Sbjct: 414 ATGQVVKFDGFLALYQ----------EGRDDEEDEDSRRLPAMSPNDALKRQSLAVTQHF 463
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP R+SE SLVK++EELGIGRPSTYAS L+VL+DR YV ++ + L+ E +GR+V AFL
Sbjct: 464 TEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVKLEKKRLHGEDKGRVVVAFL 523
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F+ +Y FTA++E +LD VS W+ +L D+W+ F + L + QV +L
Sbjct: 524 ESFFARYVEYDFTANLEEQLDRVSNNEISWQQVLKDFWTGFIGAVDEIKDLRVAQVLDVL 583
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
++ G ++ + + R CP CG G L K +FGA F+GC+ +P C Y +
Sbjct: 584 DEMLGQHIYPARTDGGDIRQCPSCGNGRLNLKAGKFGA--FVGCSNYPECRYTRQLAA-- 639
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRASVS 1063
D E T R+ +G P + V +K+G +G Y+QLGE + G PKRA +
Sbjct: 640 -DGEATADRS--------LGQDPDTGRDVWVKAGRFGPYIQLGEQKDYAEGEKPKRAGIP 690
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
+ L+ AL+LL P +G HP+ G+PI L R G V+H +T AS+ +
Sbjct: 691 KGTSPGDVELDLALKLLSLPREIGKHPETGEPITAGLGRFGPFVKHEKTYASLEAGDEVF 750
Query: 1124 DVTLEKALEFLSGKDV----RRCGRPKGK 1148
D+ + +A+ ++ K RR G GK
Sbjct: 751 DIGINRAVTLIAEKIAKGPSRRFGADPGK 779
>gi|418406818|ref|ZP_12980137.1| DNA topoisomerase I subunit omega [Agrobacterium tumefaciens 5A]
gi|358007311|gb|EHJ99634.1| DNA topoisomerase I subunit omega [Agrobacterium tumefaciens 5A]
Length = 894
Score = 606 bits (1562), Expect = e-170, Method: Compositional matrix adjust.
Identities = 336/799 (42%), Positives = 478/799 (59%), Gaps = 30/799 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M WEV SA+
Sbjct: 2 NVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDQDFEMSWEVDSASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH++++L+++ L + V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSSDGLFLATDPDREGEAISWHVLDLLKKKRVLGDK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS +L L+CDR
Sbjct: 121 LDAMANPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVSLRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L K+L SI + +A ++
Sbjct: 181 EAEIERFVSEEYWNISALLKTPRGDE-----FEAKLVSADGKKLQGRSIKTGDDANRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A + ++ + V++NP P+ TSTLQQ A++++ FSA+ TM++AQKLYEG+ +
Sbjct: 236 LLEGATY-IVDTVEAKPVKRNPGPPFTTSTLQQAASSRMGFSASRTMQVAQKLYEGIDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R I E++G + PE+ R Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARRAIGEQFGDRYVPEKA-RFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI-GNAD-ESIVF 767
IRPTD R P + LD D L+LY LIW R +A QM A + + V+I + D E
Sbjct: 353 IRPTDFNRTPDQVKRYLDADQLRLYDLIWKRGIASQMASAEIERTTVEILADKDGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDDEGRLPQINARENLAKQKINASQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EELGIGRPSTYA+TLK L DR Y+ + R L P RGR+V+AF
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLKTLSDREYIIIDKRKLIPHSRGRLVTAF 526
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F++ +Y FTAD+E +LD +SAG +WK +L D+W F + + L + V
Sbjct: 527 LESFFAKYVEYDFTADLEEKLDRISAGELDWKQVLRDFWKDFFAQIEDTKELRVTNVLDA 586
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
L + +F + R C VCG G L K+ ++GA F+GC+ +P CN+ + L
Sbjct: 587 LNEVLAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNF-TRQLTS 643
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
D E + N EPK +G P + E++ L+SG +G Y+Q G+ G KR+S+
Sbjct: 644 DGSEAEASVSN----EPKALGADPMTGEELTLRSGRFGPYIQRGD---GKEAKRSSLPKG 696
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ I E AL L+ P ++G HP+ G+ I L R G + H + A++ +
Sbjct: 697 WKPEDIDHEKALALINLPRDIGKHPETGKMISAGLGRYGPFLLHDGSYANLESIEDVFSI 756
Query: 1126 TLEKALEFLSGKDVRRCGR 1144
L +A+ ++ K + GR
Sbjct: 757 GLNRAVTVIAEKQSKGPGR 775
>gi|399088348|ref|ZP_10753498.1| DNA topoisomerase I, bacterial [Caulobacter sp. AP07]
gi|398031094|gb|EJL24490.1| DNA topoisomerase I, bacterial [Caulobacter sp. AP07]
Length = 894
Score = 606 bits (1562), Expect = e-170, Method: Compositional matrix adjust.
Identities = 351/811 (43%), Positives = 471/811 (58%), Gaps = 48/811 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGH+RDL ++ GSV PD+DF+M WE + +
Sbjct: 3 VVVVESPAKAKTINKYLGSGYTVLASYGHIRDLPSKDGSVEPDNDFAMHWEADAKGAKRI 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ GA+ +ILA+DPDREGEAI+WH++E+LQ++ A+ + TV RV F+ IT+ S+
Sbjct: 63 GDIVDAVKGADGVILATDPDREGEAISWHVLEVLQKKKAIKDK-TVQRVTFNAITKTSVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+ID LV+AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS L LI DRE
Sbjct: 122 DAMAHPRDIDMELVEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVCLRLIVDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
+EI+ FK QEYW+VEA + + F L + K+L + + + A +
Sbjct: 182 LEIERFKTQEYWSVEADV------TAGAEPFVGRLVKHEGKKLTKFDLNNEGSALAAKAA 235
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A F+V K+ R P+ TSTLQQ+A+ KL FSA TM+ AQKLYEG+ + G
Sbjct: 236 VEKATFKVAAVEKKPGKRSPAPPFTTSTLQQEASRKLGFSAQRTMQAAQKLYEGIDI-GG 294
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ + E E RS+I YG+ + PE PR Y K KNAQEAHEAIR
Sbjct: 295 ETVGLITYMRTDGVSVEPEGIAEARSVIGNVYGAPYVPET-PRYYKAKAKNAQEAHEAIR 353
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R PA L L+ D +LY LIW R +A QM+ A + + VD+ +AD R++
Sbjct: 354 PTSLNRNPASLR--LEPDLARLYELIWKRMIASQMESARIERTTVDLESADGQTGLRATG 411
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F G+ A YE E +++ E A L ++ G + + QH T+P
Sbjct: 412 QVVLFPGYLAVYE----------EGRDDEGDEDSARLPIIEEGATAKVLDARADQHFTEP 461
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKK+EELGIGRPSTYAS L VL+DR YV + + PE +GR+V+AFL +
Sbjct: 462 PPRYSEASLVKKMEELGIGRPSTYASVLTVLRDREYVRMDKQRFIPEDKGRLVTAFLEQF 521
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F +Y FTA +E +LD VS G +WK L D+W F + L V L ++
Sbjct: 522 FRRYVEYDFTAALEEQLDLVSDGKLDWKQFLRDFWKDFHAAVGEIAELRTTNVLDALNES 581
Query: 952 FGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK--TLY 1004
G +F P+K R CP CG G L KV +FGA FIGC+ +P C + + T
Sbjct: 582 LGPHIF---PDKGDGSDPRLCPTCGTGMLSLKVGKFGA--FIGCSNYPECRFTRQLATSE 636
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYV-QLGEDRTGYLPKRASVS 1063
GD + E K +G +PA+ V LK+G +G YV + +G PKR+S+
Sbjct: 637 GDGEAEAA---------DKELGINPATGRAVWLKNGRFGPYVEEPPAADSGDKPKRSSLP 687
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
+ LE AL LL P +G HP DG+ I L R G V H T A++ +
Sbjct: 688 KGWTPAGLDLEKALRLLSLPREVGKHPDDGKVITAGLGRFGPFVLHDGTYANLENPEEVF 747
Query: 1124 DVTLEKALEFLSGKDVRRCGRPKGKPKREEA 1154
D+ L +A+ L+ K R G G+P+R +A
Sbjct: 748 DIGLNRAVVLLADK---RAG--GGRPQRGQA 773
Score = 47.8 bits (112), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 22/131 (16%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ +G HP + + G +G +V D T A++ + ++V I L A+ LL
Sbjct: 707 PREVGKHPDDGKVITAGLGRFGPFVL--HDGT-----YANLENPEEVFDIGLNRAVVLLA 759
Query: 1082 YP---------------VNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
LGNHP+DG+P+ + R G ++H T A+VPK P +T
Sbjct: 760 DKRAGGGRPQRGQAAALAELGNHPEDGKPVRVLSGRFGPYIKHGDTNANVPKGADPAALT 819
Query: 1127 LEKALEFLSGK 1137
+++A+ L+ +
Sbjct: 820 MDEAVVLLADR 830
>gi|158423485|ref|YP_001524777.1| DNA topoisomerase I [Azorhizobium caulinodans ORS 571]
gi|158330374|dbj|BAF87859.1| DNA topoisomerase I [Azorhizobium caulinodans ORS 571]
Length = 892
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 351/809 (43%), Positives = 491/809 (60%), Gaps = 43/809 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VV+VES KAK I YLG YEV+ SYGH+RDL ++ GSV P+ DF M+WEV A L
Sbjct: 3 VVIVESPAKAKTINKYLGPGYEVIASYGHIRDLPSKDGSVDPEADFRMLWEVDPKAQKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A+ LILA+DPDREGEAI+WH++E+L+++ AL + V RVVF+ IT+ ++
Sbjct: 63 NDIAKAVKVADGLILATDPDREGEAISWHVLEVLREKKAL-KGQKVERVVFNAITKQAVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++A R +D LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDRE
Sbjct: 122 EAMKAPRAVDVALVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F +EYW++ A L DTF A L+ K++ +LS+G+ EA
Sbjct: 182 REIELFVAKEYWSIAATLATPRG---DTFE--ARLSGADGKKITRLSVGTAEEAAAFRAA 236
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+++A F V +N + VR++P P + TSTLQQ+A+ KL + TM++AQ+LYEGV +
Sbjct: 237 LDTAAFSV-RNVEAKPVRRHPQPPFTTSTLQQEASRKLGLAPARTMQIAQRLYEGVDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G AGLITYMRTDG+ ++ EA R+ I +YG+ + P PRKY K KNAQEAHEAI
Sbjct: 295 GETAGLITYMRTDGVDMAPEAVTATRNAISAQYGARYLPGT-PRKYTTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPTD R P ++ LD + +LY LIW+RT+A QM+ A + + DI A +
Sbjct: 354 RPTDPSRHPREMARHLDAEQARLYELIWTRTIASQMESAELERTTADIIAKAAGRELELT 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ + V+F GF Y + G ++EE+ R L ++ G+ L E++ QH
Sbjct: 414 ATGTVVKFDGFLTLYRE---GKDDEDDDEESRR------LPAMSAGEALDKREIKTDQHF 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SLVK++EELGIGRPSTYA+ L VL+DR YV ++ + L PE +GR+V+AFL
Sbjct: 465 TEPPPRYSEASLVKRMEELGIGRPSTYAAVLAVLRDREYVKLEKKRLVPEDKGRLVTAFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F + +Y FTAD+E +LD +SA +WK +L D+W+ FS + L + QV L
Sbjct: 525 QSFFKKYVEYDFTADLEEKLDEISAAEIDWKQVLRDFWNDFSLAVDATKELRVSQVIDAL 584
Query: 949 EKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
++ LF P K+ R CP CG G L K+ +FGA FIGC+ +P C Y
Sbjct: 585 DEILTAHLF---PAKEDGSDPRLCPTCGSGRLSLKMGKFGA--FIGCSNYPECRYTRPLS 639
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
G+ + R +G P + +V L+ G +G Y+QLGE G PKR+S+
Sbjct: 640 GGEGEAGGDGVRK--------LGTDPETGLEVTLRDGRFGAYLQLGEAVDGEKPKRSSLP 691
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
+ LE AL LL P +G HP+DG+PI+ + R G ++H + A++
Sbjct: 692 KGLAPADVDLETALALLALPRRVGTHPEDGEPILAGIGRFGPYIQHGKVYANLEAADDVL 751
Query: 1124 DVTLEKALEFLSGKDVR-RCGR---PKGK 1148
V L +A+ L+ K R R GR P G+
Sbjct: 752 TVGLNRAVVLLAEKQSRGRGGRGAAPAGR 780
>gi|99036020|ref|ZP_01315059.1| hypothetical protein Wendoof_01000097 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 760
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 324/776 (41%), Positives = 474/776 (61%), Gaps = 42/776 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++++VES KAK I YL ++V S+GHVRDL A++GSV PD+DF++ +E A +
Sbjct: 2 ALLIVESPAKAKTIGKYLSKEFKVAASFGHVRDLPAKNGSVDPDNDFTIKYETIEKAEKY 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K + A S ++ LA+DPDREGEA+AWH++E L+++ A+ + RVVF+EIT+ ++
Sbjct: 62 IKELVKAASKTSDIYLATDPDREGEAMAWHVIETLKEKKAISNENNIYRVVFNEITKRAV 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A++ REI+ +LV+A ARRALDYL+GF++SPLLW KL G +SAGRVQS AL +IC+R
Sbjct: 122 QEAIKNPREINMDLVRAQQARRALDYLVGFSLSPLLWTKLSGSKSAGRVQSVALKIICER 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI +F QEYW+++A + + +F A L+H+ +K+L + I + EAK++ +
Sbjct: 182 EDEISKFITQEYWSIKAEMQNSKDE-----AFFAMLSHYDNKKLEKFDIKNEEEAKNLVR 236
Query: 591 KINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I S + V +R V++NP P+ITS+LQQDA NKL F+ M++AQ LYEG+ +
Sbjct: 237 EIESRQYAV-STVERKQVKRNPLPPFITSSLQQDAVNKLYFNVKSVMRIAQNLYEGIDI- 294
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG HI+DEA IR I YG + P + PRKY KKVKNAQEAHEA
Sbjct: 295 GGETVGLITYMRTDGFHIADEAINSIRGSIKSLYGDKYLP-QSPRKYVKKVKNAQEAHEA 353
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPTDI R P + L + KLY LIW RT+A QM+ A + Q+ V+I + D+ ++ R+
Sbjct: 354 IRPTDINRTPGSIKDYLTPEQFKLYDLIWKRTIASQMESAILDQVVVEISSTDQKVILRA 413
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S S + F GF Y+D N E +L ++K G+ L VE KQH T
Sbjct: 414 SGSSIFFDGFYRVYQD-------------NIEAENEGLLPAMKEGEACKLISVEPKQHFT 460
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RYSE S+VKK+EE+GIGRPSTYA+ + VLQDR YV++ S+ P RG++V+ FL
Sbjct: 461 QPPPRYSEASIVKKMEEIGIGRPSTYATIISVLQDREYVSLDSKRFIPSSRGKIVTIFLE 520
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F +Y FTA ME +LD +S G +WK L +W F + + + +V +
Sbjct: 521 TFFQRCVEYDFTAQMEEKLDLISNGHADWKKELGHFWVPFFGHVNSVKQMTHDEVFSGIH 580
Query: 950 KTFGDSLFASLPNKDRS--CPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
D + K+ + CP C G I K++ AG F+GC+ +P CN+ K + G +
Sbjct: 581 DLVIDWFCSEEGRKEVNTKCPACLGG--ILKLNFGKAGVFLGCSNYPECNH-TKEITGSN 637
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKD 1067
D N + PK +G + ++V++K GP+G Y++ + L K+ +VS KD
Sbjct: 638 D---------NSEYPKSLGIDDITNQEVMIKKGPFGLYLEFNNE----LKKKKTVSIPKD 684
Query: 1068 --VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
V+ I L A +LL P +G HP+ G+ + + L R G+ + + S+ K+ K
Sbjct: 685 INVNEIDLSTATQLLSLPKVIGEHPETGKEVKIGLGRFGYYIFYDGRYFSLKKSSK 740
>gi|42520935|ref|NP_966850.1| DNA topoisomerase I [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42410676|gb|AAS14784.1| DNA topoisomerase I [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 816
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 324/776 (41%), Positives = 474/776 (61%), Gaps = 42/776 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++++VES KAK I YL ++V S+GHVRDL A++GSV PD+DF++ +E A +
Sbjct: 2 ALLIVESPAKAKTIGKYLSKEFKVAASFGHVRDLPAKNGSVDPDNDFTIKYETIEKAEKY 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K + A S ++ LA+DPDREGEA+AWH++E L+++ A+ + RVVF+EIT+ ++
Sbjct: 62 IKELVKAASKTSDIYLATDPDREGEAMAWHVIETLKEKKAISNENNIYRVVFNEITKRAV 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A++ REI+ +LV+A ARRALDYL+GF++SPLLW KL G +SAGRVQS AL +IC+R
Sbjct: 122 QEAIKNPREINMDLVRAQQARRALDYLVGFSLSPLLWTKLSGSKSAGRVQSVALKIICER 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI +F QEYW+++A + + +F A L+H+ +K+L + I + EAK++ +
Sbjct: 182 EDEISKFITQEYWSIKAEMQNSKDE-----AFFAMLSHYDNKKLEKFDIKNEEEAKNLVR 236
Query: 591 KINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I S + V +R V++NP P+ITS+LQQDA NKL F+ M++AQ LYEG+ +
Sbjct: 237 EIESRQYAV-STVERKQVKRNPLPPFITSSLQQDAVNKLYFNVKSVMRIAQNLYEGIDI- 294
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG HI+DEA IR I YG + P + PRKY KKVKNAQEAHEA
Sbjct: 295 GGETVGLITYMRTDGFHIADEAINSIRGSIKSLYGDKYLP-QSPRKYVKKVKNAQEAHEA 353
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPTDI R P + L + KLY LIW RT+A QM+ A + Q+ V+I + D+ ++ R+
Sbjct: 354 IRPTDINRTPGSIKDYLTPEQFKLYDLIWKRTIASQMESAILDQVVVEISSTDQKVILRA 413
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S S + F GF Y+D N E +L ++K G+ L VE KQH T
Sbjct: 414 SGSSIFFDGFYRVYQD-------------NIEAENEGLLPAMKEGEACKLISVEPKQHFT 460
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RYSE S+VKK+EE+GIGRPSTYA+ + VLQDR YV++ S+ P RG++V+ FL
Sbjct: 461 QPPPRYSEASIVKKMEEIGIGRPSTYATIISVLQDREYVSLDSKRFIPSSRGKIVTIFLE 520
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F +Y FTA ME +LD +S G +WK L +W F + + + +V +
Sbjct: 521 TFFQRCVEYDFTAQMEEKLDLISNGHADWKKELGHFWVPFFGHVNSVKQMTHDEVFSGIH 580
Query: 950 KTFGDSLFASLPNKDRS--CPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
D + K+ + CP C G I K++ AG F+GC+ +P CN+ K + G +
Sbjct: 581 DLVIDWFCSEEGRKEVNTKCPACLGG--ILKLNFGKAGVFLGCSNYPECNH-TKEITGSN 637
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKD 1067
D N + PK +G + ++V++K GP+G Y++ + L K+ +VS KD
Sbjct: 638 D---------NSEYPKSLGIDDITNQEVMIKKGPFGLYLEFNNE----LKKKKTVSIPKD 684
Query: 1068 --VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
V+ I L A +LL P +G HP+ G+ + + L R G+ + + S+ K+ K
Sbjct: 685 INVNEIDLSTATQLLSLPKVIGEHPETGKEVKIGLGRFGYYIFYDGRYFSLKKSSK 740
>gi|431805750|ref|YP_007232651.1| DNA topoisomerase I [Liberibacter crescens BT-1]
gi|430799725|gb|AGA64396.1| DNA topoisomerase I [Liberibacter crescens BT-1]
Length = 840
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 326/769 (42%), Positives = 466/769 (60%), Gaps = 36/769 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES TKAK I YLG Y+VL S+GHVRDL A++GSV P DF M WEV ++ H+
Sbjct: 3 VVVVESPTKAKTISKYLGSDYKVLSSFGHVRDLPAKNGSVIPQKDFEMTWEVDKSSKKHM 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+ I A+ +E+LILA+DPDREGEAI+WH++ +LQ ++ + +N ++ RVVF+ +T+ ++
Sbjct: 63 EMIANAVKSSESLILATDPDREGEAISWHVLSLLQNKN-ITDNKSIKRVVFNAVTKQAVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 122 DAIKHPRDIDLALVSAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLICNRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
++I+ F P+EYW + +L+ ++ F A L SKR+ + SI + +A +
Sbjct: 182 LDIERFIPKEYWLLSVLLETQKGE-----LFEAQLVSVNSKRIEKNSICNQHDANVLTSL 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A+++V K K+ + R P+ TSTLQQ A+++L FSA+ +MK+AQKLYEG+ L DG
Sbjct: 237 LTGASYKVEKIEKKPIKRNPSPPFTTSTLQQSASSRLGFSASKSMKIAQKLYEGINL-DG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ I+ EA + R I +G + PE+ PR Y K KNAQEAHEAIR
Sbjct: 296 ETVGLITYMRTDGVQIAAEAIEAARHSIKTHFGDQYVPEK-PRVYSTKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI---GNADESIVFR 768
PTD R P ++ L+ D L+LY LIW R++A QM A + + I N D++ + R
Sbjct: 355 PTDFNRFPNKIAKFLESDQLRLYELIWKRSIASQMSSAEFERTTITIQAKNNHDDTAILR 414
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
S S + F GF A+++D + +L +K + L ++ QH
Sbjct: 415 KSGSTLCFDGFLASWKDYTDTE---------KDDDEDTLLPYMKQNEVLLEKKINASQHF 465
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+K LEELGIGRPSTY + L L DR+Y+ + R L P+ +GR+V+AFL
Sbjct: 466 TEPPPRYSEASLIKNLEELGIGRPSTYTAILTTLCDRDYIVIDKRQLLPQNKGRLVTAFL 525
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F + +Y FTA++E +LD +S+G WK +L ++W F + L + V L
Sbjct: 526 ESFFRQYVEYDFTAELEEKLDMISSGALNWKDVLREFWQEFIIKIDNTKKLCVSDVIDTL 585
Query: 949 EKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
LF P KD R C C G L K+S++GA FIGC +P+CNY
Sbjct: 586 NNLLAPLLF---PQKDDVIDSRKCLACNTGQLSLKLSKYGA--FIGCTNYPKCNYTRLFS 640
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
Y E L + EPK++G P + E + L+SG +GFYVQ GE++ R S+
Sbjct: 641 Y----ENQLLTAPSTTIEPKILGSDPLTNETITLRSGRFGFYVQRGEEKNKM--SRCSLP 694
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRT 1112
+ + + E A+ LL P ++G HP+ + I + R G +++ T
Sbjct: 695 KSWNANDVDYEKAVALLSLPRSVGTHPETDKIISTGIGRYGPYLKYDDT 743
>gi|402820997|ref|ZP_10870557.1| hypothetical protein IMCC14465_17910 [alpha proteobacterium
IMCC14465]
gi|402510229|gb|EJW20498.1| hypothetical protein IMCC14465_17910 [alpha proteobacterium
IMCC14465]
Length = 853
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 345/855 (40%), Positives = 483/855 (56%), Gaps = 97/855 (11%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG+ Y+VL S+GHVRDL ++GSV PD++FSM+WEV SA+ L
Sbjct: 3 LVIVESPAKAKTINKYLGNDYKVLASFGHVRDLPEKNGSVDPDEEFSMIWEVQSASGKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I L ++ LILA+DPDREGEAI+WH++E+++++ L + + RVVF+ IT ++
Sbjct: 63 NEIADYLKKSDRLILATDPDREGEAISWHVLEVMREKGVL-DGKQIQRVVFNAITRNAVT 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ RE+D LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 122 EAMNHPRELDEKLVHAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALKLICERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
+EI++F P+EYW+V A + L P LT ++ + ++ + A +
Sbjct: 182 LEIEKFIPREYWSVSADFKTQNGDKL-----PTRLTLLNGGKVEKFTLTNEAAAMAAKDA 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I S NF+V + + R P+ TSTLQQ+AA KL F+A TM++AQ LY+G+ + DG
Sbjct: 237 IESGNFKVSRIESKPGQRNPSAPFTTSTLQQEAARKLGFNAKRTMQIAQLLYQGIDI-DG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
A GLITYMRTDG I+ EA E R +I E +G + PE+ R+Y K NAQEAHEAIR
Sbjct: 296 EATGLITYMRTDGTQIAPEAVTETRDVIKEDFGPDYLPEKA-REYQTKAANAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R P ++ LD D KLY LIW RTMA QM+ A V + +DI + + R+S
Sbjct: 355 PTSLARRPEYITSTLDADQAKLYELIWKRTMASQMENARVQRTSIDITDEAGTTGLRASG 414
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
+ + F GF YE+ K++E+ D+ E L + G L L +V QH T+P
Sbjct: 415 TVITFPGFLKLYEE-------GKDDEKADKEEE-QTLPQVTEGMSLDLQKVSPDQHFTEP 466
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P R+SE +LVKK+EELGIGRPSTYAS L VL+DR+YV + +P +GR+V++FL +
Sbjct: 467 PPRFSEATLVKKMEELGIGRPSTYASVLSVLRDRDYVFMDRNRFHPHDKGRLVTSFLESF 526
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F++ +Y FTA +E +LD VS G ++K +L +W FS+ + Q+ + +
Sbjct: 527 FNQYVEYDFTAALEGDLDKVSNGDLDYKDVLRKFWENFSTSVDSTMEIRNTQILDKMNEV 586
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
G +F + D R CP C EG L K +FGA F+GC ++P C + + E
Sbjct: 587 LGPHIFKDTGDGDPRICPKCSEGELSLKTGKFGA--FVGCTRYPECRFTRPFAQAEGREG 644
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE--------DRTGYLPK---- 1058
D ++R +G P S V LK G +G Y+QLG+ R+G LPK
Sbjct: 645 D-IERE--------LGTDPESGLLVHLKDGRFGPYIQLGDPGEDNEKPKRSG-LPKDMMP 694
Query: 1059 ---------------RASVSHIKDVDSIT------------------LEDALELLRYPVN 1085
R H + D IT LE EL VN
Sbjct: 695 ADMTLDYALRLLSLPRVVGQHPETGDDITADLGRYGPYLKHGKQSASLETVDELFEIGVN 754
Query: 1086 -----------------------LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
LG HP DG+P+ + R G V+H + A++PK+ +P
Sbjct: 755 RAVTVIAEKKSKAPARGSSVIKELGEHPDDGKPVNVMNGRYGPYVKHNKINATIPKDEEP 814
Query: 1123 NDVTLEKALEFLSGK 1137
+ VTLE+ALE + +
Sbjct: 815 DSVTLERALELIVAR 829
>gi|374576008|ref|ZP_09649104.1| DNA topoisomerase I, bacterial [Bradyrhizobium sp. WSM471]
gi|374424329|gb|EHR03862.1| DNA topoisomerase I, bacterial [Bradyrhizobium sp. WSM471]
Length = 919
Score = 604 bits (1557), Expect = e-169, Method: Compositional matrix adjust.
Identities = 334/809 (41%), Positives = 486/809 (60%), Gaps = 42/809 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEVL S+GHVRDL A++GSV PD +F M+WEV A
Sbjct: 2 NIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDANFKMIWEVDPKAAGR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L I +L A+ LILA+DPDREGEAI+WH++E+L+++ A+ ++ + RVVF+ IT+ ++
Sbjct: 62 LNDIAKSLKNADRLILATDPDREGEAISWHVLEVLKEKRAIKDH-KIERVVFNAITKQAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 TDAMKHPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++F +EYW++ A L + F A L K++ +L IG+ EA+D ++
Sbjct: 181 ELEIEKFVAREYWSLIATLLTPRGDA-----FEARLVGADGKKIQRLDIGTGAEAEDFKK 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +A + V + R P+ TSTLQQ+A+ K F+ +TM++AQ+LYEG+ +
Sbjct: 236 ALEAAAYAVTAVDAKPARRNPQAPFTTSTLQQEASRKYGFAPAHTMRIAQRLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I A + R +I E YG+ + P+ PR+Y K KNAQEAHEAI
Sbjct: 295 GETTGLITYMRTDGVQIDPSAITQARKVIGEDYGNAYVPD-APRQYQAKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN--ADESIVFR 768
RPTD+ R P +S L+ D +LY LIW RT+A QM+ A + + VDI ++ R
Sbjct: 354 RPTDMSRRPDSMSRKLESDQARLYELIWKRTIASQMESAELERTTVDITAKVGGRTLDLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ V+F GF A Y+ E +++ E L ++ D L + + QH
Sbjct: 414 ATGQVVKFDGFLALYQ----------EGRDDEEDEDSRRLPAMSPNDALKRQSLAVTQHF 463
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP R+SE SLVK++EELGIGRPSTYAS L+VL+DR YV ++ + L+ E +GR+V AFL
Sbjct: 464 TEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVKLEKKRLHGEDKGRVVVAFL 523
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F+ +Y FTA++E +LD +S W+ +L D+W+ F + L + QV +L
Sbjct: 524 ESFFARYVEYDFTANLEEQLDRISNNEISWQQVLKDFWTGFIGAVDEIKDLRVAQVLDVL 583
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ G ++ + + R CP CG G L K +FGA F+GC+ +P C Y +
Sbjct: 584 DDMLGQHIYPARTDGGDIRQCPSCGNGRLNLKAGKFGA--FVGCSNYPECRYTRQLAA-- 639
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT---GYLPKRASVS 1063
D E T R+ +G P + V +K+G +G Y+QLGE + G P+RA +
Sbjct: 640 -DGEATADRS--------LGQDPDTGRDVWVKAGRFGPYIQLGEQKDYAEGEKPRRAGIP 690
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
+ LE AL+LL P +G HP+ G+PI L R G V+H +T AS+ +
Sbjct: 691 KGTSPGDVELELALKLLSLPREIGKHPETGEPITAGLGRFGPFVKHEKTYASLEAGDEVF 750
Query: 1124 DVTLEKALEFLSGKDV----RRCGRPKGK 1148
D+ + +A+ ++ K RR G GK
Sbjct: 751 DIGINRAVTLIAEKIAKGPSRRFGADPGK 779
>gi|304321606|ref|YP_003855249.1| DNA topoisomerase I [Parvularcula bermudensis HTCC2503]
gi|303300508|gb|ADM10107.1| DNA topoisomerase I [Parvularcula bermudensis HTCC2503]
Length = 876
Score = 603 bits (1554), Expect = e-169, Method: Compositional matrix adjust.
Identities = 338/814 (41%), Positives = 485/814 (59%), Gaps = 49/814 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VV+VES +KAK I YLG Y+VL SYGH+RDL +++GSV P+ DFSM+WE + + H+
Sbjct: 3 VVIVESPSKAKTINKYLGSDYKVLASYGHIRDLPSKNGSVDPEADFSMIWESDARSKKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ A+ +ILA+DPDREGEAI+WH++E+L ++ ++ ++ RV F+ IT+ +++
Sbjct: 63 SDIVDAVKAADGVILATDPDREGEAISWHLLEVLDKK-KALKDKSIQRVAFNAITKRAVE 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R ID +LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC+RE
Sbjct: 122 EAIANPRTIDQDLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLICERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
+EI++F +E+WT+EA + D+ F A L ++ + ++ + + ++
Sbjct: 182 LEIEKFIAEEFWTLEANVSAD-----DSPQFAARLVKLDGTKVEKFTLTTEEDGSRAKKA 236
Query: 592 INSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A F +IK+ + R+NP P+ TSTLQQ+A+ KL F+A TM+ AQ+LYEG+ +
Sbjct: 237 VEDAQF-LIKSVEAKPTRRNPAAPFTTSTLQQEASRKLGFNARRTMQTAQRLYEGITI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA +R I +G+ + P PR Y K KNAQEAHE I
Sbjct: 295 GETTGLITYMRTDGIDMAPEAVMAVRDEIKSTFGADYLPS-SPRMYKSKQKNAQEAHECI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT+ R P L L D+D +LY LIW R MACQM+ A + Q +DI + D R++
Sbjct: 354 RPTNFARHPDALKQL-DQDQYRLYDLIWKRAMACQMETARLEQTTIDIESRDGKTGLRAT 412
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S V F GF Y + R +E DR L + G + + +QH TQ
Sbjct: 413 GSVVVFDGFLKLYAEG-----RDDTEDEKDRS-----LPKVSEGSDAQVTDPTPEQHFTQ 462
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP R++E SLVK+LEELGIGRPSTYAS + LQDR+YVT+ P+ +GR+V+AFL +
Sbjct: 463 PPPRFTEASLVKRLEELGIGRPSTYASIISTLQDRSYVTMDKNRFIPDDKGRIVTAFLEN 522
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F +Y FTA +E LD++S G WK L +W F + L I +V L +
Sbjct: 523 FFGRYVEYDFTAKLEETLDDISNGEMAWKAFLRRFWDEFHARVEDMSDLRISEVLDALNE 582
Query: 951 TFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY---IAKT 1002
G +F P ++ R CP CGEG L KV R+GA FIGC+++P C + + ++
Sbjct: 583 ALGPHIF---PQREDGRPPRECPTCGEGELSLKVGRYGA--FIGCSRYPECKHTRPLGQS 637
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDR--TGYLPKRA 1060
G+ ED + +G P + + V LKSG +G YVQLGE T PKR+
Sbjct: 638 EQGNAPAED-----------RQLGVDPDTSQAVWLKSGRFGPYVQLGEPDPDTKEKPKRS 686
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
S+ D S+ + A++LL P ++G HP+DG+ I L R G V+H + A++
Sbjct: 687 SIPKSWDAASLDFDKAMKLLALPRDVGPHPEDGEMIEASLGRYGPYVKHGKLYANLESID 746
Query: 1121 KPNDVTLEKALEFLSGK--DVRRCGRPKGKPKRE 1152
D+ + +A+ L K + R GR KP+RE
Sbjct: 747 DVFDIGINRAVAVLEDKKANPRGRGRSAAKPQRE 780
>gi|426401927|ref|YP_007020899.1| DNA topoisomerase I [Candidatus Endolissoclinum patella L2]
gi|425858595|gb|AFX99631.1| DNA topoisomerase I [Candidatus Endolissoclinum patella L2]
Length = 872
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 332/799 (41%), Positives = 474/799 (59%), Gaps = 38/799 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++VVVES KA+ I YLG Y VL SYGH+ DL + GSV P+ DF M+W+ +
Sbjct: 3 NIVVVESPAKARTINNYLGKEYYVLASYGHICDLPPKKGSVNPEHDFHMIWQTDQRSEKQ 62
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ GA+ LILA+DPDREGEAI+WHI L + L + V RV F+ IT+ ++
Sbjct: 63 IKIIAKAVKGAKQLILATDPDREGEAISWHICNELDARKVL-TGVKVQRVAFNAITKDAV 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R ++ +L+ AY ARRALDYL+GF +SPLLWRKLPG +SAGRVQS AL L+C+R
Sbjct: 122 MTAIANPRSLNQDLINAYRARRALDYLVGFTLSPLLWRKLPGARSAGRVQSVALRLVCER 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
EI++F +EYW+++A+ KE+ DTFS A LT+ + + I S EA
Sbjct: 182 NSEIEKFVAKEYWSIKAIFRTKEN---DTFS--ALLTNLNGNSIKRFDIKSEDEANAAMA 236
Query: 591 KINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ F +I + ++ +V++NP+ P+ TSTLQQ+A+NKL F T TM++AQ LY+GV +
Sbjct: 237 IVEKGMF-LIDSVEKRLVKRNPSKPFTTSTLQQEASNKLGFRTTRTMQVAQSLYDGVNI- 294
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITY+RTDG+HIS E +IR I YG ++ P+ P Y K KNAQEAHEA
Sbjct: 295 GGETTGLITYIRTDGIHISAEGITQIRQTISCEYGEYYLPKT-PIIYTSKAKNAQEAHEA 353
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPTDI R P ML L+ D KLYSLIW R +A QM + Q +D+ + ++ I+ ++
Sbjct: 354 IRPTDIARTPNMLCAYLNHDQWKLYSLIWKRAVASQMASTELSQTTIDVRDKNKLIILQA 413
Query: 770 SCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ S + F GF Y E+ + KE + D E+ L +L GD + V QH
Sbjct: 414 TSSFITFDGFLKLYRENCETN----KETNQID-SESNKSLPNLNNGDIVTQQNVIPTQHF 468
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP YSE SLVKK+E+LGIGRPSTYA+ L+VL DR YV + R PE RGR+V+ FL
Sbjct: 469 TQPPTHYSEASLVKKMEDLGIGRPSTYANILQVLHDREYVRLDRRRFMPEDRGRLVTTFL 528
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
S +F +YSFTAD+E +LDN+S G +W+ +L ++W F L I +V + L
Sbjct: 529 SSFFKHYVEYSFTADLENQLDNISDGQLDWRQVLREFWKTFKCLVDDINKLSISEVLEKL 588
Query: 949 EKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY-------- 998
+ D F + N + R C C +GTL ++S+FGA FIGC+ +P C +
Sbjct: 589 DDALADYFFPNGNNEHQTRKCQNCLDGTLSLRLSKFGA--FIGCSNYPGCKFTRQLSERR 646
Query: 999 IAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE--DRTGYL 1056
IA D+ E +TL P+++G+ P + +KV + +GPYG Y+QL + +R+
Sbjct: 647 IASKAIDDEKEYNTL--------PRILGNDPETGKKVSINNGPYGVYLQLDQSKERSKDK 698
Query: 1057 PKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASV 1116
PKR + + I L+ AL L P + HP+ + I + R G ++H +
Sbjct: 699 PKRTPLPKQIALADIDLDTALAFLSLPRLICEHPETKEIIQAGIGRFGPYLKHGEHYFKL 758
Query: 1117 PKNMKPNDVTLEKALEFLS 1135
P + + + +A++ +S
Sbjct: 759 PSDHTVLTIGINQAVQLIS 777
Score = 43.5 bits (101), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Query: 1017 TNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDA 1076
+ ++ +L+G+HP + V++++G +G Y Q G RA++S +++D ITLE
Sbjct: 781 SKINIKRLLGYHPNDGKPVIIQTGRFGLYAQHGS-------LRANLSKKEEIDKITLEKV 833
Query: 1077 LELL 1080
++LL
Sbjct: 834 IDLL 837
>gi|167645470|ref|YP_001683133.1| DNA topoisomerase I [Caulobacter sp. K31]
gi|167347900|gb|ABZ70635.1| DNA topoisomerase I [Caulobacter sp. K31]
Length = 896
Score = 599 bits (1545), Expect = e-168, Method: Compositional matrix adjust.
Identities = 346/809 (42%), Positives = 469/809 (57%), Gaps = 44/809 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGH+RDL ++ GSV PD+DF+M WE + +
Sbjct: 3 VVVVESPAKAKTINKYLGSGYTVLASYGHIRDLPSKDGSVEPDNDFAMHWEADAKGAKRI 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
I A+ GA+ +ILA+DPDREGEAI+WH++E+LQ++ A+ + +V RV F+ IT+ S+
Sbjct: 63 GDIVDAMKGADGVILATDPDREGEAISWHVLEVLQKKKAIKDK-SVQRVTFNAITKTSVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+ID LV+AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS L LI DRE
Sbjct: 122 EAMAHPRDIDMELVEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVCLRLIVDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
+EI+ FK QEYW+VEA + + F A L ++K+L + + + + A +
Sbjct: 182 LEIERFKTQEYWSVEADV------TAGAEPFVARLVKHENKKLTKFDLNNESSALAAKAA 235
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A F+V K+ R P+ TSTLQQ+A+ KL FSA TM+ AQKLYEG+ + G
Sbjct: 236 VEKAVFKVAAVEKKPGKRSPAPPFTTSTLQQEASRKLGFSAQRTMQAAQKLYEGIDI-GG 294
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ + E E RS+I YG + PE PR Y K KNAQEAHEAIR
Sbjct: 295 ETVGLITYMRTDGVSVEPEGIAEARSVIGSVYGETYVPET-PRYYKAKAKNAQEAHEAIR 353
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT ++R P L L+ D +LY LIW R +A QM+ A + + VD+ +AD R++
Sbjct: 354 PTSLKRNPGSLR--LESDLGRLYELIWKRMIASQMESARIERTTVDLESADGQTGMRATG 411
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F G+ A YE E +++ E A L ++ G + + QH T+P
Sbjct: 412 QVVLFPGYLAVYE----------EGRDDEGDEDSARLPMIEEGAAAKVLDARADQHFTEP 461
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKK+EELGIGRPSTYAS L VL+DR YV + + PE +GR+V+AFL +
Sbjct: 462 PPRYSEASLVKKMEELGIGRPSTYASVLTVLRDREYVRMDKQRFIPEDKGRLVTAFLEQF 521
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F +Y FTA +E +LD VS G +WK L D+W F + L V L ++
Sbjct: 522 FRRYVEYDFTAALEEQLDLVSDGKLDWKQFLRDFWKDFHAAVGEIAELRTTNVLDALNES 581
Query: 952 FGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
G +F P+K R CP CG G L KV +FGA FIGC+ +P C + +
Sbjct: 582 LGPHIF---PDKGDGSDPRLCPTCGTGQLSLKVGKFGA--FIGCSNYPECRFTRQL---- 632
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYV-QLGEDRTGYLPKRASVSHI 1065
K +G +PA+ V LK+G +G YV + + +G PKR+S+
Sbjct: 633 ---ATAEGEGEAEAADKELGINPATGRAVWLKNGRFGPYVEEPAAEGSGDKPKRSSLPKG 689
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ LE AL LL P +G HP DG+ I L R G V H T A++ + D+
Sbjct: 690 WTPAGLDLEKALRLLALPREVGMHPDDGKKITAGLGRFGPFVLHEGTYANLENPEEVFDI 749
Query: 1126 TLEKALEFLSGKDVRRCGRPKGKPKREEA 1154
L +A+ L+ K R G G+P+R +A
Sbjct: 750 GLNRAVALLADK---RAG--GGRPQRGQA 773
Score = 47.0 bits (110), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 22/131 (16%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ +G HP +K+ G +G +V L E A++ + ++V I L A+ LL
Sbjct: 707 PREVGMHPDDGKKITAGLGRFGPFV-LHEG------TYANLENPEEVFDIGLNRAVALLA 759
Query: 1082 YP---------------VNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+LG HP+DG+P+ + R G ++H T A+VPK P +T
Sbjct: 760 DKRAGGGRPQRGQAAALADLGVHPEDGKPVKVLSGRFGPYIKHGDTNANVPKGADPAALT 819
Query: 1127 LEKALEFLSGK 1137
L +A+ L+ +
Sbjct: 820 LAEAVVLLADR 830
>gi|384252302|gb|EIE25778.1| DNA topoisomerase I [Coccomyxa subellipsoidea C-169]
Length = 986
Score = 599 bits (1545), Expect = e-168, Method: Compositional matrix adjust.
Identities = 334/814 (41%), Positives = 472/814 (57%), Gaps = 53/814 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+V++VES KAK IQ +LG Y+VL SYGHVRDL A+SGSV P+ DF+M+WE +A+
Sbjct: 18 TVILVESPAKAKKIQQFLGTEYQVLASYGHVRDLPAKSGSVLPEQDFTMLWEQSAASRPR 77
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L+ + A+ ++ L+LA+DPDREGEAI+WH+ E LQ AL + V R+ F E+T ++
Sbjct: 78 LRELAAAVKQSDVLVLATDPDREGEAISWHVQEELQAAKALR-GVAVQRITFTEVTSKAV 136
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ AL A R I LV AYLARRALDYL GF +SPLLWRKLPG +SAGRVQS AL L+C+R
Sbjct: 137 QDALAAPRTISQALVDAYLARRALDYLFGFTLSPLLWRKLPGSRSAGRVQSVALRLVCER 196
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E +I+ F QEYW+V A L ++ F A L K + Q + A +E
Sbjct: 197 EAQIEVFTRQEYWSVTAQLQSEKGPQ-----FEARLVA--GKSIPQEGLDQEAAASAVE- 248
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
K+ S QV S++++ R P+ITSTLQQDA+ KL ++ + +M+LAQ+LYEG +
Sbjct: 249 KLQSVPLQVASLSQKTVTRNPQPPFITSTLQQDASVKLGYNPSTSMQLAQQLYEGPEASG 308
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G G+ITYMRTDGL +S EA +EIRS + + +G + P + PR Y K KNAQEAHEAI
Sbjct: 309 GE--GMITYMRTDGLQMSAEAVQEIRSAVQDMHGKEYLPAQ-PRIYKSKAKNAQEAHEAI 365
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNA-DESIVFRS 769
RPT LP + +LY+LIW+R +A QM A + Q+ D+ ++ D + RS
Sbjct: 366 RPTKAALLPQKTALQPASQLYRLYALIWARAIASQMASAKLLQVSADVADSSDLGFLLRS 425
Query: 770 SCSRVEFLGFQAAYE----------DVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYL 819
+ + V+F G+ A Y + D+ + +E +++ +L L G P+ L
Sbjct: 426 TSTSVKFPGYLAVYPPKRPSGEAAAEADSEQVSTEEGQQS-------VLLGLAQGQPVRL 478
Query: 820 GEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEF 879
V +QH T+PP RY+E SLVK LEE GIGRPSTYA LKVLQ+R YV + + L PE
Sbjct: 479 LSVTPEQHFTKPPPRYTEASLVKALEEHGIGRPSTYAPILKVLQERGYVMKEGKALKPES 538
Query: 880 RGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSL 939
RGR+++ FL YF DY FTA +E +LD VS G WK +L D+W F ++
Sbjct: 539 RGRVLTEFLQAYFPRYVDYGFTASLEDDLDEVSGGNGVWKEVLRDFWGPFQQLVQQTSNI 598
Query: 940 HIHQVEKMLEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
I +V +L+ G F +++ R CP CG G L ++++ G FIGC+ +P C
Sbjct: 599 SITEVIDVLDPLIGRHFFTEGQSEEDARRCPECG-GRLGLRLAKHGG--FIGCSGYPACT 655
Query: 998 YIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQL--------- 1048
Y+ + E +++G PA+ ++ L GPYG+Y++
Sbjct: 656 YLRPLQLHEPGETPAGPGEGE----RVLGADPANGREIRLVHGPYGWYLEQAIGPEEPKE 711
Query: 1049 -----GEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARA 1103
G PKR S+ I+L +AL+LL++P LG HP+DGQ + +
Sbjct: 712 KPPGKGRKSATAKPKRVSLGKSPQTPDISLAEALDLLQWPKELGPHPEDGQAVTAAMGPF 771
Query: 1104 GFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGK 1137
G VRH AS+PK + P ++ LE A++ L+ K
Sbjct: 772 GPYVRHNAINASLPKGLSPGEIGLEDAIKLLAEK 805
>gi|373449965|ref|ZP_09542052.1| DNA topoisomerase 1 [Wolbachia pipientis wAlbB]
gi|371932830|emb|CCE77039.1| DNA topoisomerase 1 [Wolbachia pipientis wAlbB]
Length = 816
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 327/807 (40%), Positives = 487/807 (60%), Gaps = 45/807 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++++VES KAK I YL ++V S+GHVRDL A++GSV PD+DF+M +E+ A +
Sbjct: 2 ALLIVESPAKAKTIGKYLSKEFKVAASFGHVRDLPAKNGSVDPDNDFAMKYEIIEKAEKY 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K + S ++ LA+DPDREGEAIAW+++E L+++ A+++ + RVVF+EIT+ ++
Sbjct: 62 VKELVKEASKTSDIYLATDPDREGEAIAWNVIEALKERKAINDESNIHRVVFNEITKRAV 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A++ REI+ +LV+A ARRALDYL+GF++SPLLW KL G +SAGRVQS AL LIC+R
Sbjct: 122 QEAIKNPREINMDLVRAQQARRALDYLVGFSLSPLLWTKLSGSKSAGRVQSVALKLICER 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI +F QEYW+++A + + +F A L+H+ +K+L + I + EAK++ +
Sbjct: 182 EDEISKFITQEYWSIKAEMQNSKDE-----AFFAMLSHYDNKKLEKFDIKNEEEAKNLVR 236
Query: 591 KINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I S + V +R V++NP P+ITS+LQQDA NKL F+ M++AQ LYEG+ +
Sbjct: 237 EIESRQYAV-STVERKQVKRNPLPPFITSSLQQDAVNKLYFNVKNVMRVAQNLYEGINI- 294
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG HI+DEA IR I YG + P PR+Y KKVKNAQEAHEA
Sbjct: 295 GGETVGLITYMRTDGFHIADEAINSIRGSIKSLYGDKYLP-HSPRQYVKKVKNAQEAHEA 353
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPTDI R P + L + KLY LIW RT+A QM+ A + Q+ V+I + D+ ++ R+
Sbjct: 354 IRPTDINRTPGSIKDYLTPEQFKLYDLIWKRTIASQMESAILDQVVVEISSIDQKVILRA 413
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S S + F GF Y+D N E +L ++K + L V+ KQH T
Sbjct: 414 SGSSIFFDGFYKVYQD-------------NIEAENEGLLPAMKEEEACKLISVDPKQHFT 460
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RYSE S+VKK+EE+GIGRPSTYA+ + VLQDR YV++ ++ P RG++V+ FL
Sbjct: 461 QPPPRYSEASIVKKMEEVGIGRPSTYATIISVLQDREYVSLDNKRFIPSSRGKIVTIFLE 520
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F +Y FTA ME LD++S G +WK L +W F ++ + + ++ +
Sbjct: 521 TFFQRCVEYDFTAQMEERLDSISNGHADWKKELGYFWVPFFNHVNSVKQMTHDEIFSGIH 580
Query: 950 KTFGDSLFASLPNKD---RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
D F S K+ + CP C G I K++ AG F+GC+ +P CN+ K + G
Sbjct: 581 NLVVD-WFCSEEGKEKIGKKCPNCSGG--ILKLNFGKAGVFLGCSNYPECNH-TKEITGS 636
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+D N + PK +G + ++V++K GP+G Y++ + K+ SV
Sbjct: 637 ND---------NSEYPKSLGIDDVTGQEVMIKKGPFGLYLEFNSESEK--KKKISVPKDI 685
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN-DV 1125
+V+ I L A LL P +G HP+ G+ + + L R G+ + + S+ K+ K D
Sbjct: 686 NVNDIDLNTATRLLSLPKIIGEHPETGKEVKIGLGRFGYYILYDGRYFSLKKSSKEVLDT 745
Query: 1126 TLEKALEFLSG---KDVRRCG-RPKGK 1148
L +A++ + K+++ G KGK
Sbjct: 746 QLNEAIQIIESSPRKELKSLGFNEKGK 772
>gi|413944331|gb|AFW76980.1| hypothetical protein ZEAMMB73_987965, partial [Zea mays]
Length = 680
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 292/437 (66%), Positives = 343/437 (78%), Gaps = 3/437 (0%)
Query: 343 PLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWE 402
PLYPP KSVVVVES TKAKVIQ YLGDMYEVLPSYGHVRDLA RS SVRPDDDFSMVWE
Sbjct: 246 PLYPPRAKSVVVVESATKAKVIQKYLGDMYEVLPSYGHVRDLAGRSKSVRPDDDFSMVWE 305
Query: 403 VPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVF 462
VP+AAWTHLKSIKVAL AENLILASDPDREGEAIAWHI EML+QQ L ++TVARVVF
Sbjct: 306 VPAAAWTHLKSIKVALQRAENLILASDPDREGEAIAWHIKEMLEQQGVLGFDVTVARVVF 365
Query: 463 HEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSA 522
HEI+E +IK AL + R ID +LV AYLARR+LDYLIGF ISPLLWRKLPGCQSAGRVQSA
Sbjct: 366 HEISEDAIKKALMSPRYIDMDLVNAYLARRSLDYLIGFGISPLLWRKLPGCQSAGRVQSA 425
Query: 523 ALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSH 582
AL+L+CDRE EI++FK EYWTV+ + + + P + H SK+L+QLSI S
Sbjct: 426 ALALVCDREAEIEQFKAHEYWTVQTDFKIQSADPSNATCIPFCIKHLNSKKLDQLSIPSQ 485
Query: 583 TEAKDIEQKINSANFQVIKNSKRSMVRKN-PTPYITSTLQQDAANKLNFSATYTMKLAQK 641
EA+ IE+ I+S+ F+V+ KRS + KN P PYITS+LQQDAANKL+F+A YTMK+AQ
Sbjct: 486 EEAQAIEKMIHSSTFEVL-GVKRSKIHKNPPLPYITSSLQQDAANKLHFTAGYTMKIAQN 544
Query: 642 LYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVK 701
LYEG+ L GLITY+RTDG HISD A ++IRSL+ ERYG + E+ RKY KKVK
Sbjct: 545 LYEGINLSSEETTGLITYIRTDGFHISDGAVEDIRSLVKERYGQKYVSED-IRKYLKKVK 603
Query: 702 NAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNA 761
NAQEAHEAIRPT IRR P+ L G+LD+D LKLY+LIW RTMACQM+ + IQVD+G
Sbjct: 604 NAQEAHEAIRPTSIRRPPSSLVGILDDDSLKLYTLIWKRTMACQMEASRTEMIQVDVGIP 663
Query: 762 DESIVFRSSCSRVEFLG 778
+ + F S+ S+++F G
Sbjct: 664 EGEMNFHSTASKLDFKG 680
>gi|190571637|ref|YP_001975995.1| DNA topoisomerase I [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
gi|213019040|ref|ZP_03334847.1| DNA topoisomerase I [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
gi|190357909|emb|CAQ55370.1| DNA topoisomerase I [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
gi|212995149|gb|EEB55790.1| DNA topoisomerase I [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
Length = 816
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 330/814 (40%), Positives = 489/814 (60%), Gaps = 59/814 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++++VES KAK I YL ++V S+GHVRDL A++GSV PD+DF+M +E+ A +
Sbjct: 2 ALLIVESPAKAKTIGKYLSKEFKVAASFGHVRDLPAKNGSVDPDNDFAMKYEIIEKAEKY 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K + S ++ LA+DPDREGEAIAW+++E L+++ A+++ + RVVF+EIT+ ++
Sbjct: 62 VKELVKEASKTSDIYLATDPDREGEAIAWNVIEALKERKAINDESNIHRVVFNEITKRAV 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A++ REI+ +LV+A ARRALDYL+GF++SPLLW KL G +SAGRVQS AL LIC+R
Sbjct: 122 QEAIKNPREINMDLVRAQQARRALDYLVGFSLSPLLWTKLSGSKSAGRVQSVALKLICER 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI +F QEYW+++A + + +F A L+H+ +K+L + I + EAK++ +
Sbjct: 182 EDEISKFITQEYWSIKAEMQNSKDE-----AFFAMLSHYDNKKLEKFDIKNEEEAKNLVR 236
Query: 591 KINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I S + V +R V++NP P+ITS+LQQDA NKL F+ M++AQ LYEG+ +
Sbjct: 237 EIESRQYAV-STVERKQVKRNPLPPFITSSLQQDAVNKLYFNVKNVMRVAQNLYEGINI- 294
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG HI+DEA IR I YG + P + PRKY KKVKNAQEAHEA
Sbjct: 295 GGETVGLITYMRTDGFHIADEAINSIRGSIKSLYGDKYLP-QSPRKYVKKVKNAQEAHEA 353
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPTDI R P + L + KLY LIW RT+A QM+ A + Q+ V+I + D+ ++ R+
Sbjct: 354 IRPTDINRTPGSIKDYLTPEQFKLYDLIWKRTIASQMESAILDQVVVEISSIDQKVILRA 413
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S S + F GF Y+D N E +L ++K + L V+ KQH T
Sbjct: 414 SGSSIFFDGFYKVYQD-------------NIEAENEGLLPAMKEEEACKLISVDPKQHFT 460
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RYSE S+VKK+EE+GIGRPSTYA+ + VLQDR YV++ ++ P RG++V+ FL
Sbjct: 461 QPPPRYSEASIVKKMEEVGIGRPSTYATIISVLQDREYVSLDNKRFIPSSRGKIVTIFLE 520
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F +Y FTA ME LD++S G +WK L +W F + H++ V++M
Sbjct: 521 TFFQRCVEYDFTAQMEERLDSISNGHADWKKELGYFWVPFFN--------HVNSVKQMTH 572
Query: 950 KTFGDSL-------FASLPNKD---RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYI 999
+ F S K+ + CP C G I K++ AG F+GC+ +P CN+
Sbjct: 573 DEIFSGIHDLVVNWFCSEEGKEEIGKKCPNCSGG--ILKLNFGKAGVFLGCSNYPACNH- 629
Query: 1000 AKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKR 1059
K + G +D N + PK +G + ++V++K GP+G Y++ + K+
Sbjct: 630 TKEITGSND---------NSEYPKSLGIDDVTGQEVMIKKGPFGLYLEFNSESEK--KKK 678
Query: 1060 ASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKN 1119
SV +V+ I L A LL P +G HP+ G+ + + L R G+ + + S+ K+
Sbjct: 679 ISVPKDINVNDIDLNTATRLLSLPKIIGEHPETGKEVKIGLGRFGYYILYDGRYFSLKKS 738
Query: 1120 MKPN-DVTLEKALEFLSG---KDVRRCG-RPKGK 1148
K D L +A++ + K+++ G KGK
Sbjct: 739 SKEVLDTQLNEAIQIIESSPRKELKSLGFNEKGK 772
>gi|418936586|ref|ZP_13490293.1| DNA topoisomerase I [Rhizobium sp. PDO1-076]
gi|375056715|gb|EHS52883.1| DNA topoisomerase I [Rhizobium sp. PDO1-076]
Length = 905
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 334/797 (41%), Positives = 468/797 (58%), Gaps = 27/797 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD+DF M+WEV +A+
Sbjct: 2 NVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDNDFEMLWEVDTASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH++++L+++ + + V RVVF+ IT+ ++
Sbjct: 62 MKDIADAVKSSDGLFLATDPDREGEAISWHVLDLLKKKKVIGDK-PVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMANPRDIDTPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KR+ + S+ + +A I+
Sbjct: 181 ENEIERFVAEEYWNISALLKTPRGDD-----FEARLVSHLGKRIQRNSVTNGDQAATIKT 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A + V + + R P+ TSTLQQ A++KL +SA+ TM++AQKLYEG+ +
Sbjct: 236 LLEGARYAVDSVEAKPVKRNPGPPFTTSTLQQAASSKLGYSASRTMQIAQKLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ ++ EA R+ + +++G + PE+ PR Y K KNAQEAHEAI
Sbjct: 295 GETVGLITYMRTDGVQMAPEAIDAARAAVADQFGPRYVPEK-PRIYSTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPT+ R P + LD D LKLY LIW R +A QM A + + V+I N E R
Sbjct: 354 RPTEFTRSPDKVRRYLDADQLKLYDLIWKRGIASQMASAEIERTTVEILADNNGEKAGLR 413
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ S + F GF AAY D ++ ++ D L + + L +V QH
Sbjct: 414 AVGSVIRFDGFIAAYTDQKEEGEPVEDGDDEDGR-----LPEINAREALAKQKVNASQHF 468
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SL+KK+EELGIGRPSTYA+TLK L DR YV R L P +GR+V+AFL
Sbjct: 469 TEPPPRYSEASLIKKMEELGIGRPSTYAATLKTLSDREYVITDKRKLIPHSKGRLVTAFL 528
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F+ +Y FTAD+E +LD +SAG WK +L D+W+ F + L + V L
Sbjct: 529 ESFFTRYVEYDFTADLEEKLDRISAGELNWKDVLRDFWTNFFGQIEDTKELRVTNVLDAL 588
Query: 949 EKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ +F + R C VCG G L K+ ++GA F+GC+ +P CN+ +
Sbjct: 589 NEALAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGA--FVGCSNYPECNFTRQL---- 642
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
E+ + +EPK +G P ++E++ L+SG +G YVQ G+ G KR+S+
Sbjct: 643 -SSENGAEAEAGGNEPKALGKDPVTEEEISLRSGRFGPYVQRGD---GKEAKRSSLPKGW 698
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
I + A LL P +G HP+ G+ I L R G V H T A+V +
Sbjct: 699 SPGDIDFDKAQSLLALPREVGLHPETGKVISAGLGRYGPFVLHEGTYANVESIEDVFTIG 758
Query: 1127 LEKALEFLSGKDVRRCG 1143
L +A+ L+ K + G
Sbjct: 759 LNRAVTVLAEKQSKGPG 775
>gi|353328548|ref|ZP_08970875.1| DNA topoisomerase I [Wolbachia endosymbiont wVitB of Nasonia
vitripennis]
Length = 816
Score = 597 bits (1539), Expect = e-167, Method: Compositional matrix adjust.
Identities = 330/814 (40%), Positives = 488/814 (59%), Gaps = 59/814 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++++VES KAK I YL ++V S+GHVRDL A++GSV PD+DF+M +E+ A +
Sbjct: 2 ALLIVESPAKAKTIGKYLSKEFKVAASFGHVRDLPAKNGSVDPDNDFAMKYEIIEKAEKY 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K + S ++ LA+DPDREGEAIAW+++E L+++ A+++ + RVVF+EIT+ ++
Sbjct: 62 VKELVKEASKTSDIYLATDPDREGEAIAWNVIEALKERKAINDESNIHRVVFNEITKRAV 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A++ REI+ +LV+A ARRALDYL+GF++SPLLW KL G +SAGRVQS AL LIC+R
Sbjct: 122 QEAIKNPREINMDLVRAQQARRALDYLVGFSLSPLLWTKLSGSKSAGRVQSVALKLICER 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI +F QEYW+++A + + +F A L+H+ +K+L + I + EAK++ +
Sbjct: 182 EDEISKFITQEYWSIKAEMQNSKDE-----AFFAMLSHYDNKKLEKFDIKNEEEAKNLVR 236
Query: 591 KINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I S + V +R V++NP P+ITS+LQQDA NKL F+ M++AQ LYEG+ +
Sbjct: 237 EIESRQYAV-STVERKQVKRNPLPPFITSSLQQDAVNKLYFNVKNVMRVAQNLYEGINI- 294
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG HI+DEA IR I YG + P PRKY KKVKNAQEAHEA
Sbjct: 295 GGETVGLITYMRTDGFHIADEAINSIRGSIKSLYGDKYLP-HSPRKYVKKVKNAQEAHEA 353
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPTDI R P + L + KLY LIW RT+A QM+ A + Q+ V+I + D+ ++ R+
Sbjct: 354 IRPTDINRTPGSIKDYLTPEQFKLYDLIWKRTIASQMESAILDQVVVEISSIDQKVILRA 413
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S S + F GF Y+D N E +L ++K + L V+ KQH T
Sbjct: 414 SGSSIFFDGFYKVYQD-------------NIEAENEGLLPAMKEEEACKLISVDPKQHFT 460
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RYSE S+VKK+EE+GIGRPSTYA+ + VLQDR YV++ ++ P RG++V+ FL
Sbjct: 461 QPPPRYSEASIVKKMEEVGIGRPSTYATIISVLQDREYVSLDNKRFIPSSRGKIVTIFLE 520
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F +Y FTA ME LD++S G +WK L +W F + H++ V++M
Sbjct: 521 TFFQRCVEYDFTAQMEERLDSISNGHADWKKELGYFWVPFFN--------HVNSVKQMTH 572
Query: 950 KTFGDSL-------FASLPNKD---RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYI 999
+ F S K+ + CP C G I K++ AG F+GC+ +P CN+
Sbjct: 573 DEIFSGIHDLVVNWFCSEEGKEEIGKKCPNCSGG--ILKLNFGKAGVFLGCSNYPACNH- 629
Query: 1000 AKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKR 1059
K + G +D N + PK +G + ++V++K GP+G Y++ + K+
Sbjct: 630 TKEITGSND---------NSEYPKSLGIDDVTGQEVMIKKGPFGLYLEFNSESEK--KKK 678
Query: 1060 ASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKN 1119
SV +V+ I L A LL P +G HP+ G+ + + L R G+ + + S+ K+
Sbjct: 679 ISVPKDINVNDIDLNTATRLLSLPKIIGEHPETGKEVKIGLGRFGYYILYDGRYFSLKKS 738
Query: 1120 MKPN-DVTLEKALEFLSG---KDVRRCG-RPKGK 1148
K D L +A++ + K+++ G KGK
Sbjct: 739 SKEVLDTQLNEAIQIIESSPRKELKSLGFNEKGK 772
>gi|262277129|ref|ZP_06054922.1| DNA topoisomerase I [alpha proteobacterium HIMB114]
gi|262224232|gb|EEY74691.1| DNA topoisomerase I [alpha proteobacterium HIMB114]
Length = 851
Score = 597 bits (1538), Expect = e-167, Method: Compositional matrix adjust.
Identities = 336/852 (39%), Positives = 489/852 (57%), Gaps = 95/852 (11%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG+ Y VL SYGHVRDL +++GSV +++F+M WE+ +
Sbjct: 2 NLVIVESPAKAKTINKYLGEDYIVLASYGHVRDLPSKNGSVDTENNFNMTWEIDPGSKKP 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK I A A+ +ILA+DPDREGEAIAWH V+ + L ++ V RVVF+EIT+ ++
Sbjct: 62 LKEIYDAAKDAKKIILATDPDREGEAIAWH-VKNILDDKKLLKDKQVERVVFNEITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + R I+ LV AY+ARRALDYL+GFNISP+LW KLPG +SAGRVQS AL LI R
Sbjct: 121 KNGIDNPRSINTELVDAYMARRALDYLVGFNISPILWTKLPGSKSAGRVQSVALKLIVQR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ FKP+EYW+++++ KE+ L++ +T F+S++ N+ + + K +
Sbjct: 181 ENEIELFKPEEYWSIQSLFKNKENKDLNS-----KITLFKSEKTNKFFFKNEEQTKSAVE 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+I NF++ + K+ R P+ TST+QQ+A+ KL F A+ TM++AQ+LY+G ++ D
Sbjct: 236 EIKKHNFKITQIEKKPYKRNPYAPFTTSTMQQEASKKLGFGASRTMQVAQRLYQGFEI-D 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG IS+EA + R+ I + G + PE+ KK KNAQEAHEAI
Sbjct: 295 GETVGLITYMRTDGTQISNEALQTCRTFIENKIGKEYLPEQARNYSGKKAKNAQEAHEAI 354
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTDI R PA L +LD D ++LY LIW+RT++ QMQ A + VDI N+D++I FR++
Sbjct: 355 RPTDINRDPASLKSILDRDQMRLYELIWNRTVSSQMQSAEFERTSVDIYNSDKTIGFRAN 414
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S +F GF Y++ + + + IL ++ GD L L ++ +QH T
Sbjct: 415 GSIQKFDGFLKLYQETKEEDEKKDD-----NDDDENILPNVNEGDELKLDKIIDEQHFTN 469
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKKLEELGIGRPSTYAS + VL RNYV + ++ P RG++++AFL
Sbjct: 470 PPPRYSEASLVKKLEELGIGRPSTYASIISVLSTRNYVELINKKFTPTDRGKLITAFLDK 529
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
F+ DY+FTA++E LD +++G +W +L +W +F+S + L + ML +
Sbjct: 530 LFNRYVDYNFTANLEDSLDEITSGKIKWINVLSQFWEKFNSNVNEVKELRTRTILDMLNE 589
Query: 951 TFGDSLFASLPNKD------RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
+ D +F +KD R C CG G L KV RFGA FIGC+ +P C +
Sbjct: 590 SLADIIF----DKDGEGKVLRKCQ-CG-GDLSLKVGRFGA--FIGCSNYPECKFTRPLSR 641
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT----------- 1053
+ED + EPK IG K K++LK G +G Y+Q+G D
Sbjct: 642 IKAAQEDFMS------EPKEIGETDEGK-KIMLKKGRFGPYLQVGNDEKEMKNFSIPKGI 694
Query: 1054 --------------------GYLP---------------------KRASVSHIKDVDSIT 1072
G P K A++ +D+ SI
Sbjct: 695 SPNDVDIEKAKFLSGLPKVLGKYPENNEDITLNNGRFGPYVKCANKSATLESPEDIFSIG 754
Query: 1073 LEDALELLRYP----------VNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+ A+ L+ NLG HP+D +P+ + + G ++++ A++P + P
Sbjct: 755 INKAITLIAEAKPGRRSSNEIKNLGEHPEDKKPVKVMKGQFGPYIKYKTINATIPDDKDP 814
Query: 1123 NDVTLEKALEFL 1134
ND+T+E+AL ++
Sbjct: 815 NDITMEEALVYI 826
>gi|302382940|ref|YP_003818763.1| DNA topoisomerase I [Brevundimonas subvibrioides ATCC 15264]
gi|302193568|gb|ADL01140.1| DNA topoisomerase I [Brevundimonas subvibrioides ATCC 15264]
Length = 877
Score = 596 bits (1536), Expect = e-167, Method: Compositional matrix adjust.
Identities = 344/805 (42%), Positives = 472/805 (58%), Gaps = 42/805 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG +EVL SYGH+RDL ++ GSV+PD+DF+M WEV + A T
Sbjct: 2 NLVIVESPAKAKTINKYLGSGFEVLASYGHIRDLPSKDGSVKPDEDFAMEWEVDARASTR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ I A A+ +ILA+DPDREGEAI+WH++E+L ++ A+ ++ V RV F+ IT++++
Sbjct: 62 MTEIAAAAKRADRVILATDPDREGEAISWHVLEVLNKKKAI-KDTPVERVTFNAITKSAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV+AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL ++ DR
Sbjct: 121 LEAMANPRQIDMELVEAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIVVDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI+ F+PQEYW++EA L + D+ F L KR+ +L I A
Sbjct: 181 ELEIERFRPQEYWSIEADL------AADSPPFTTRLVKHAGKRIQRLDIKDEATANAARD 234
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I + +F I++ ++ VR+ P+P + TSTLQQ+A+ KL F A TM+ AQKLYEGV
Sbjct: 235 AIQTGDF-TIRSIEKKPVRRFPSPPFTTSTLQQEASRKLGFDAQRTMRAAQKLYEGVD-- 291
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTDG+ + E + R +I E +G P E R Y K KNAQEAHEA
Sbjct: 292 --ETGGLITYMRTDGVQTTPEGIAQAREVIGETFGPAFVPAEA-RYYKTKAKNAQEAHEA 348
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT+I R P L L+ D +LY LIW R +A QM+ A + + V++ D R+
Sbjct: 349 IRPTNIARRPDSLR--LESDLQRLYELIWKRMVASQMEAARLDRTTVEVETPDGQTGLRA 406
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ V F GF A YE+ + E+EE+D A L +LK G + + QH T
Sbjct: 407 TGQVVTFDGFLAVYEEGRDEKQKGAESEEDDDT---ARLPTLKEGAKAKVEAIRTDQHFT 463
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE +LVKKLEELGIGRPSTYAS L L+DR YV + PE GR+V+AFL
Sbjct: 464 EPPPRYSEATLVKKLEELGIGRPSTYASILTTLRDREYVRMDKNRFIPEDNGRLVTAFLE 523
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F +Y FTA +E +LD VSAG +WK LL ++WS+ A L V L+
Sbjct: 524 QFFGRWVEYDFTAALENQLDEVSAGDMDWKALLREFWSKLKP--ATAAVLERQGVIDELD 581
Query: 950 KTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
G LF + R CP+C G L K S FIGC+ +P C Y G++
Sbjct: 582 TAIGPFLFPEKADGSDARLCPLCKTGHLHLKASFKMKSSFIGCSNYPECRYTRGFGAGEN 641
Query: 1008 -DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQL---GEDRTGYLPKRASVS 1063
+E R +DE A+ V LK G +G YV+ GE++ PKR+S+
Sbjct: 642 AGDEAGGDRELGIDE--------ATGLPVALKIGRFGPYVETANPGEEK----PKRSSLP 689
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
++TLE A+ LL P +G+HP+DG+PI L R G + H T A+V +
Sbjct: 690 KGWSPATLTLEQAVRLLALPRPVGDHPEDGKPITAGLGRYGPFILHAGTYANVADIDEVF 749
Query: 1124 DVTLEKALEFLSGKDVRRCGRPKGK 1148
D+ L +A+ L+ K R G+ G+
Sbjct: 750 DIGLNRAVVLLAEK---RAGKFAGR 771
>gi|402496629|ref|YP_006555889.1| topoisomerase IA TopA [Wolbachia endosymbiont of Onchocerca ochengi]
gi|398649902|emb|CCF78072.1| topoisomerase IA TopA [Wolbachia endosymbiont of Onchocerca ochengi]
Length = 816
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 319/779 (40%), Positives = 476/779 (61%), Gaps = 48/779 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++++VES KAK I YLG ++V S+GHVRDL ++GSV PD+DF++ +E+ A +
Sbjct: 2 ALLIVESPAKAKTIGKYLGKEFKVAASFGHVRDLPVKNGSVDPDNDFAIKYEIIKKAEKY 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K + S ++ LA+DPDREGEAIAW++VE L+++ A++ + RVV +EIT+ ++
Sbjct: 62 VKELVKEASKTSDIYLATDPDREGEAIAWNVVEALKERKAINNKSNIHRVVLNEITKMAV 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A++ R+I+ +LV+A ARRALDYL+GF++SPLLW KL G +SAGRVQS AL LIC+R
Sbjct: 122 QEAIKNPRKINMDLVRAQQARRALDYLVGFSLSPLLWTKLSGSKSAGRVQSVALKLICER 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI++F PQEYW+++A + + +F L+++ +K+L + I + EAK++ +
Sbjct: 182 EDEINKFIPQEYWSIKAEMQNSKDK-----TFFTMLSYYDNKKLEKFDIKNQEEAKNLVR 236
Query: 591 KINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I S + I+ + V+++P P+ITS+LQQDA NKL+F+ M++AQ LYEG+ +
Sbjct: 237 DIESKQY-AIRTVEHKQVKRSPLPPFITSSLQQDAVNKLHFNVKNVMRIAQNLYEGIDI- 294
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG +I+DEA IR LI YG+ + P + PR+Y KKVKNAQEAHEA
Sbjct: 295 GGETIGLITYMRTDGFYIADEAIISIRELIKSLYGNKYLP-KSPRQYVKKVKNAQEAHEA 353
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPTDI R P + L + KLY LIW RT+ QM+ + Q+ V+I + D+ I+ R+
Sbjct: 354 IRPTDINRTPDSIKSYLTPEQFKLYDLIWKRTIISQMKSVIIDQVAVEISSTDKKIILRA 413
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S S + F GF Y D N E +L ++K G+ L V+LKQH T
Sbjct: 414 SGSNIFFDGFYKVYND-------------NIDIEDEGLLATMKEGETCKLISVDLKQHFT 460
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RYSE S+VKK+EE+GIGRPSTYA + VLQDR YV + ++ P RG++V+ FL
Sbjct: 461 QPPLRYSEASIVKKMEEIGIGRPSTYAIIISVLQDRKYVAMNNKRFIPSSRGKIVTIFLE 520
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F +Y+FTA ME +LD +S G +WK L +W F + + + ++ +
Sbjct: 521 TFFQNCIEYNFTAQMEEKLDLISNGRADWKKELSYFWIPFFNLVNSVKQMTHDEIFDGIH 580
Query: 950 KTFGDSLFAS---LPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
D F S D+ C C +G+L K + AG F+GC+ +P CN+ K + G
Sbjct: 581 DLVVD-WFCSEEEKEEIDKKCSNCSDGSLKLKFGK--AGVFLGCSNYPICNH-TKKITGS 636
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGED----RTGYLPKRASV 1062
+D N++ PK +G + ++V++K GP+GFY++ + +T +PK
Sbjct: 637 ND---------NLEYPKSLGIDNVTGQEVVIKKGPFGFYLEFNNESEKKKTRSIPKDI-- 685
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+I D+D IT A +LL P +G HP G+ + + L R G+ + H S+ KN+K
Sbjct: 686 -NINDIDLIT---ATQLLSLPKVIGEHPNTGKEVKMGLGRFGYYIFHDGKYFSLKKNLK 740
>gi|146278351|ref|YP_001168510.1| DNA topoisomerase I [Rhodobacter sphaeroides ATCC 17025]
gi|145556592|gb|ABP71205.1| DNA topoisomerase I [Rhodobacter sphaeroides ATCC 17025]
Length = 880
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 341/798 (42%), Positives = 465/798 (58%), Gaps = 41/798 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y VL SYGHVRDL A+ GSV + +F+M WEV + + H
Sbjct: 2 AVVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPAKDGSVDTEHEFAMTWEVAADSKKH 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+++I AL + LILA+DPDREGEAI+WH+ E L +L + TV+RV F+ IT+A++
Sbjct: 62 VRAIAEALKTDDTLILATDPDREGEAISWHLQEALAS--SLKKGKTVSRVTFNAITKAAV 119
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++A R++D LV+AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS L LI +R
Sbjct: 120 TEAMKAPRQVDTALVEAYLARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVCLRLIVER 179
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
EMEI+ F+ +E+WTV AVL F A LT K+L++ + + A+ Q
Sbjct: 180 EMEIEAFRAREFWTVSAVLVTPRGQE-----FEARLTVLGGKKLDKFDLPTAEAAELAVQ 234
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +V + R P++TSTLQQ+A+ K A M AQ+LYE
Sbjct: 235 AVTSRPLKVASVEAKPASRNPSAPFMTSTLQQEASRKFGMGAKQCMSAAQRLYE------ 288
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
AG ITYMRTDG+ ++ EA R I R+G+ + P+ PR Y K KNAQEAHE I
Sbjct: 289 ---AGHITYMRTDGIDMAPEAVMAARDEIKRRFGADYVPDS-PRMYKNKAKNAQEAHECI 344
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ P L GL D D KLY LIW RT+A QM A + + V+I + D + R++
Sbjct: 345 RPTDMSASPEKL-GLTDADQRKLYELIWKRTLASQMAAARLERTTVEIASPDGQVGLRAT 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
V F GF YE+ G E +E++ L + + + + +QHHTQ
Sbjct: 404 GQVVLFDGFLKVYEE---GRDDRGEGDEDEGR-----LPQIMANEAVDKKSITPEQHHTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E +LVK++EELGIGRPSTYAS + +QDR YV L PE +GR+V+AFL++
Sbjct: 456 PPPRYTEATLVKRMEELGIGRPSTYASIVSTIQDREYVRKDKNRLIPEDKGRLVTAFLAN 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + +Y FTAD+E ELD+VSAG +K +L +W FS+ L I +V L+
Sbjct: 516 FFRKYVEYDFTADLEGELDDVSAGERNYKEVLARFWRDFSAAVAETADLRIGEVLDKLDD 575
Query: 951 TFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK-TLYGDD 1007
L+ P+ R CP CG G L K +R G G FIGC +P C Y ++ GD+
Sbjct: 576 FLAPHLYPPRPDGSDPRICPTCGSGRLHLKTAR-GGGAFIGCGNYPECRYTRPISVTGDE 634
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPK--RASVSHI 1065
D N + KL+GH + + L+SG +G YVQ GE T +PK RAS+
Sbjct: 635 D-------NAISPDGKLLGHD-EDGQPITLRSGRFGPYVQRGE-ATAEVPKPPRASLPKG 685
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
DS+ LE A LL P +G HP+DGQP+ + R G V+H T A++P +
Sbjct: 686 WAPDSVDLERARMLLNLPRLVGQHPEDGQPVEAAIGRYGPYVKHGSTYANLPDVEDVFTI 745
Query: 1126 TLEKALEFLSGKDVRRCG 1143
+ +A+E L+ K R G
Sbjct: 746 GMNRAVEVLAQKAAGRRG 763
>gi|88607358|ref|YP_505187.1| DNA topoisomerase I [Anaplasma phagocytophilum HZ]
gi|88598421|gb|ABD43891.1| DNA topoisomerase I [Anaplasma phagocytophilum HZ]
Length = 811
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 325/802 (40%), Positives = 491/802 (61%), Gaps = 45/802 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VV+VES +KAK I YLG + V+ S+GH+RD A+SGSV P +DF M++E+ + HL
Sbjct: 3 VVIVESPSKAKTISKYLGKKFNVIASFGHIRDFPAKSGSVDPSNDFKMIYEIIPKSEKHL 62
Query: 412 -KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
K +K + E + LA+DPDREGEAIAWHIVE+L+++ A+ +++TV R+VF+E+T+ ++
Sbjct: 63 DKIVKTVSAEKEAIYLATDPDREGEAIAWHIVEVLKEKCAIAKDVTVNRMVFNEVTKRAV 122
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R I+ +LV+A RR LDYL+GF +SPLLWRKLPG +SAGRVQS AL L+C+R
Sbjct: 123 TAAVDNCRPINMDLVRAQQTRRVLDYLVGFTLSPLLWRKLPGSRSAGRVQSVALRLLCER 182
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E E+++FK QEYW V L + F A L + ++L + SIG+ +AK+ +
Sbjct: 183 EYEVEQFKTQEYWDVGVDLQNQGGE-----KFEAVLKCYAGEKLEKFSIGTEEQAKEYAE 237
Query: 591 KINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ + ++ V ++ + ++NP P+ITS+LQQ+A+ KL FSA TM +AQKLYEG+ +
Sbjct: 238 TVKNQSYTV-ESVESKKTKRNPYPPFITSSLQQEASTKLGFSAKNTMMIAQKLYEGIDI- 295
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG +IS++A IR I ++G + + R Y KKVKNAQEAHEA
Sbjct: 296 GGEIVGLITYMRTDGFYISEDAVNYIRDTIKMQFGEKYLS-KSVRNYTKKVKNAQEAHEA 354
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPTDI LP LS L ++ LKLY+LIW RT+A QM+ A + Q+ VDI ++ I +
Sbjct: 355 IRPTDITMLPEQLSKYLTDEQLKLYTLIWKRTLATQMESAVIDQVAVDIKSSCGKISLHA 414
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S + F G+ Y +E++D+ +L L+ G+ L EV QH T
Sbjct: 415 TGSTLSFDGYYRVY-----------GSEDSDKRR---MLPQLREGESCELLEVHPNQHFT 460
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPPARYSE SLVKK+EE+GIGRPSTYA+ + VLQ+R Y ++ + P RGR+V+AFL+
Sbjct: 461 QPPARYSEASLVKKMEEIGIGRPSTYATIISVLQERGYTQLEQKRFIPSERGRIVNAFLT 520
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
++F + +Y FTA++E ELD +S G WK +L +W +F S + +++ ++ K +
Sbjct: 521 NFFRKYVEYDFTANLEEELDLISNGKMVWKEVLSQFWDKFISDVSSVKTIEASEILKAIT 580
Query: 950 KTFGDSLFASLPNK--DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
+ + F+S+ + R CP CG G L+ + + A F+GCN++P C Y + + GD
Sbjct: 581 RDLENYAFSSVDGESISRVCPQCGSGELMLNIGKTSA--FLGCNRYPECRY-TRGIGGDG 637
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKD 1067
+ D +++G ++E++ LK GPYG Y+QLG KR S++ K
Sbjct: 638 SA------SPADDASRILGIDEETQEEIFLKRGPYGEYLQLGNS-----TKRVSLT--KS 684
Query: 1068 VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
IT++ A ++L P+ LG +P + I L + R G + + S+ +++
Sbjct: 685 AGEITVDLAKKMLSLPLVLGCYPDTDKEIKLGIGRFGPYLFYNGVYFSIKDREDYINISH 744
Query: 1128 EKALEFL---SGKDVRRCGRPK 1146
++A+E + S K + G+ K
Sbjct: 745 QEAVEIIDKQSDKKAKLLGQNK 766
>gi|260431073|ref|ZP_05785044.1| DNA topoisomerase I [Silicibacter lacuscaerulensis ITI-1157]
gi|260414901|gb|EEX08160.1| DNA topoisomerase I [Silicibacter lacuscaerulensis ITI-1157]
Length = 871
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 351/840 (41%), Positives = 475/840 (56%), Gaps = 83/840 (9%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV PD DFSM WEV + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGPDYTVLASYGHVRDLPPKDGSVDPDHDFSMKWEVSTDSRKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L ++ ++ ++ V+RV F+ IT+ ++
Sbjct: 63 KAIADALKDDNALILATDPDREGEAISWHLQEALTKRRSIKKDTAVSRVTFNAITKDAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+Q RE+D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 KAMQNPREVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ FKP EYW+V+A+ + ++ A L K+L++ I + T+A+ Q
Sbjct: 183 MEIEAFKPVEYWSVKALFETPRGQ-----TYEARLVTLAGKKLDKHDIANATQAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I S V + R P++TSTLQQ+A+ K A +TM++AQ+LYE
Sbjct: 238 ITSRALSVTSVEAKPAARNPSAPFMTSTLQQEASRKFGMGARHTMQVAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R +I +R+G+ + P + PR Y K KNAQEAHE IR
Sbjct: 291 --AGHITYMRTDGIDMAPEAVAAARDVIKDRFGAEYVP-DSPRMYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ + A L L D+D KLY LIW RT+ACQM A + + V+IG+ D + R++
Sbjct: 348 PTDMTKDAAALK-LSDDDQRKLYDLIWKRTIACQMAAARLERTTVEIGSDDGQVGLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK------ 825
V F GF YE+ R +E+D+ L + GDP LK
Sbjct: 407 QVVLFDGFMRVYEEG-----RDDVEDEDDKR-----LPQIMQGDPARFARTTLKDQFDKA 456
Query: 826 --------------------QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDR 865
QHHTQPP RY+E +LVK++EELGIGRPSTYAS + +QDR
Sbjct: 457 TADGADKKAILSDNQAVLALQHHTQPPPRYTEATLVKRMEELGIGRPSTYASIVTTIQDR 516
Query: 866 NYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDY 925
YV L PE +GR+V+ FL ++F + Y FTA++E +LD VSAG ++K LL +
Sbjct: 517 GYVRKDKNRLIPEEKGRIVTIFLLNFFRQYVGYEFTANLEEQLDEVSAGARDYKDLLSKF 576
Query: 926 WSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSR 981
W FS+ L I +V L++ L+ P +D R CP CG G L K SR
Sbjct: 577 WRDFSAAIAETSELRISEVLDKLDEALAPQLYP--PREDGSDPRICPKCGVGRLHLKTSR 634
Query: 982 FGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGP 1041
G F+GC +P C Y + + G+ E E +L+G ++++ LKSG
Sbjct: 635 TGG--FVGCGNYPECTY-TRPIAGEGAE----------GEERLLGVD--GEDEIWLKSGR 679
Query: 1042 YGFYVQLGEDR-TGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRL 1100
+G YVQ GE P RAS+ + D + LE AL LL P +G HP+ G I
Sbjct: 680 FGPYVQRGEATPENKKPPRASLPKGWNKDDMDLEKALTLLSLPREIGEHPEGGM-ISANF 738
Query: 1101 ARAGFSVRHRRTIASVP--KNMK-PNDV---TLEKALEFLSGKDVR--RCGRPKGKPKRE 1152
R G + H+ + P N+K PNDV + +A+E L+ K R GR KP +E
Sbjct: 739 GRFGPYIMHQLPDEAKPVYANLKDPNDVFEIGMNRAVELLAEKRANPGRRGRAAAKPLKE 798
>gi|84685605|ref|ZP_01013502.1| DNA topoisomerase I [Maritimibacter alkaliphilus HTCC2654]
gi|84666271|gb|EAQ12744.1| DNA topoisomerase I [Rhodobacterales bacterium HTCC2654]
Length = 846
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 342/798 (42%), Positives = 464/798 (58%), Gaps = 51/798 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV PD+DF M+WEV + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPPKDGSVIPDNDFEMLWEVGNDSRKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL NLILA+DPDREGEAI+WH+ E L+++ A+ ++ V+RVVF+ IT++++
Sbjct: 63 KAIADALKEDNNLILATDPDREGEAISWHLEEALRKRKAIKKDTPVSRVVFNAITKSAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D +LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMKNPRDVDGDLVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F P+EYW+V+A+L F A L + K+L++ + + +A
Sbjct: 183 MEIEAFNPREYWSVKALLQTPRGQ-----QFEARLVSYAGKKLDRYDLENEQQAGLAVAA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I + V+ + R P++TSTLQQ+A+ K F A TM AQ+LYE
Sbjct: 238 IEARELSVLSVEAKPASRNPSAPFMTSTLQQEASRKFGFGARQTMSTAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R I RYG + P E PR Y K KNAQEAHE IR
Sbjct: 291 --AGYITYMRTDGIDMAPEAVTAARDEIATRYGKDYVPAE-PRVYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLS-GLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
PT++ R P+ L+ D KLY LIW RT+ACQM A + + V+IG++D + R++
Sbjct: 348 PTEMSRDPSANDIARLEPDQRKLYDLIWKRTIACQMTGARLERTAVEIGSSDGQVGLRAT 407
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
V F GF YE+ + E++ N L + GD V +QH TQ
Sbjct: 408 GQVVLFDGFLKVYEEGRDDVVIDDEDDANR-------LPQMTEGDATKKDSVTPEQHFTQ 460
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E +LVKK+EELGIGRPSTYAS + +QDR YV L PE +GR+V+ FL +
Sbjct: 461 PPPRYTEATLVKKMEELGIGRPSTYASIVTTIQDREYVRKDKGRLIPEDKGRIVTMFLLN 520
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + Y FTAD+E ELD VSAG E+K LL +W FS+ L I +V L+K
Sbjct: 521 FFRQYVGYEFTADLEEELDKVSAGEIEYKKLLARFWRDFSAAIAETSELRISEVLDKLDK 580
Query: 951 TFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
L+ P +D R CP+CG G L K SR G F+GC+ +P C Y G+
Sbjct: 581 ALEKQLYP--PREDGSDPRKCPLCGTGDLHLKTSRSGG--FVGCSNYPECRYTRPIGGGE 636
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHI 1065
+ + D +++G + E++ L+SG +G YVQ GE P RAS+
Sbjct: 637 ETQGD-----------RILGED-ENGEEISLRSGRFGPYVQRGEVSEENKKPDRASLPKG 684
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVP--KNMK-P 1122
D + LE AL LL P +G HP+ G+ I R G V H+ + P N+K P
Sbjct: 685 WSADDMDLEKALTLLSLPRLIGQHPEGGE-IKSNFGRFGPYVMHQLPDEAKPVYANLKDP 743
Query: 1123 NDV---TLEKALEFLSGK 1137
DV + +A+E L+ K
Sbjct: 744 QDVFEIGMNRAVEMLAEK 761
>gi|312115577|ref|YP_004013173.1| DNA topoisomerase I [Rhodomicrobium vannielii ATCC 17100]
gi|311220706|gb|ADP72074.1| DNA topoisomerase I [Rhodomicrobium vannielii ATCC 17100]
Length = 929
Score = 590 bits (1520), Expect = e-165, Method: Compositional matrix adjust.
Identities = 324/767 (42%), Positives = 451/767 (58%), Gaps = 36/767 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y+V+ SYGHVRDL A+ GSV PD+DF M WEV + +
Sbjct: 2 NIVIVESAAKAKTINKYLGADYKVIASYGHVRDLPAKDGSVLPDNDFEMTWEVEADSNRI 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ I A+ GA+ LILA+DPDREGEAI+WH++++L+Q+ AL+ ++V RV F+ +T+ +I
Sbjct: 62 VNEIAKAVKGADRLILATDPDREGEAISWHLLKILEQKRALN-GVSVERVAFNAVTKDAI 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ DR
Sbjct: 121 LTAMKNPRKIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVVDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+ +EYWTVEA L + F A L K+L++ I + A
Sbjct: 181 EAEIEAFRTREYWTVEAALKNGGGDA-----FTARLVARAGKKLDKFDIPNEALAHAYRD 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I +++V + R P+ TS+LQQ+A+ KL S TM++AQKLYEG+ +
Sbjct: 236 AIKGQSYRVDSVDAKDHKRNPAPPFTTSSLQQEASRKLGLSPRQTMQIAQKLYEGIDI-G 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG+ I EA + R I ++G+ + P PR Y K KNAQEAHEAI
Sbjct: 295 GETVGLITYMRTDGVQIVGEAIAQARGQIESQFGARYVPS-APRIYKTKAKNAQEAHEAI 353
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV---F 767
RPTD R P L GL E+ +LY LIW R +A QM A + + +I + V
Sbjct: 354 RPTDFGRQPDKLRGLSAEEA-RLYKLIWQRAVASQMASADIERTTAEISVPGKDGVPYGV 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S V+F GF YE E ++ E A L LK G+ L V QH
Sbjct: 413 RATGSVVKFDGFMRLYE----------EGRDDTDDEDSARLPPLKQGEALKDSGVTAAQH 462
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RY+E +L++++E LGIGRPSTYAST+ VL++R YV ++ + L PE +GR+V+ F
Sbjct: 463 FTEPPPRYTEATLIREMERLGIGRPSTYASTMAVLREREYVKLEKKRLVPEDKGRLVTTF 522
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F +Y FTA +E LD +S G +WK LL ++W F T + L + QV
Sbjct: 523 LEAFFKRYVEYDFTAYLEDRLDQISDGKLDWKALLREFWQDFIGAVTDIKDLRVTQVLDA 582
Query: 948 LEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
L + G +F P K+ R CP+C +G L K+ +FGA F+GC+ +P C Y +
Sbjct: 583 LNELLGPHIF---PAKEDGGDPRLCPLCNQGQLSLKIGKFGA--FVGCSNYPECRYTRQL 637
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
G++ D + ++G+ P + V LK+G +G Y+QLGE G PKRAS+
Sbjct: 638 KTGENGNGDGAAPAGDT----VLGNDPETGLAVCLKNGRFGPYIQLGEGGDGEKPKRASI 693
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
+ + AL+LL P +G HP+ + IM R G V H
Sbjct: 694 PGGMGLADVDFAYALKLLALPREVGPHPETQKTIMAGFGRYGPYVEH 740
Score = 44.3 bits (103), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 23/143 (16%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
P+ +G HP +++ ++ G YG YV E Y+ A ++V +I L A+ ++
Sbjct: 714 PREVGPHPETQKTIMAGFGRYGPYV---EHDGKYVKIDA-----EEVFTIGLNRAVTVIA 765
Query: 1081 --------RYPVN-----LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
R P LG HP+ G + + R G ++ + A++PK +P DVT+
Sbjct: 766 EGGTGGKGRAPKTEPIKVLGEHPEKGGKMEVLAGRFGPYIKWGKVNATIPKGTEPQDVTV 825
Query: 1128 EKALEFLSGKDVRRCGRP-KGKP 1149
++A+ ++ + G+ +GKP
Sbjct: 826 DEAVRLIAARIEAGDGKKGRGKP 848
>gi|254464540|ref|ZP_05077951.1| DNA topoisomerase I [Rhodobacterales bacterium Y4I]
gi|206685448|gb|EDZ45930.1| DNA topoisomerase I [Rhodobacterales bacterium Y4I]
Length = 875
Score = 590 bits (1520), Expect = e-165, Method: Compositional matrix adjust.
Identities = 354/838 (42%), Positives = 482/838 (57%), Gaps = 76/838 (9%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL A+ GSV PD DF M WEV + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGPDYTVLASYGHVRDLPAKDGSVDPDADFGMTWEVANDSRKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L ++ ++ ++ V+RV F+ IT+ ++
Sbjct: 63 KAIADALKDDNALILATDPDREGEAISWHLQEALTKRRSIKKDTAVSRVTFNAITKEAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMKNPRQVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F PQEYW+V A L F A LT ++L++ S+ + T A+ Q
Sbjct: 183 MEIEAFNPQEYWSVRAQLATPRGQ-----DFEARLTVMGGEKLDKYSLKNATAAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S +V+ + R P++TSTLQQ+A+ K A TM AQ+LYE
Sbjct: 238 VASRKLKVLSVEAKPAARNPSAPFMTSTLQQEASRKFGMGARQTMNAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA + R+ I +RYG+ + P PR Y K KNAQEAHE IR
Sbjct: 291 --AGYITYMRTDGIDMAPEAVQAARAEIEKRYGAEYVP-SSPRIYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ R L + D+D KLY LIW RT++CQM+ A + + VDIG+ D+ +V R++
Sbjct: 348 PTDMGRDAKALK-VTDDDQRKLYDLIWKRTLSCQMEGARLERTTVDIGSDDQQVVLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRH-------EAFAILNSL-----KTGDPLYL 819
V F GF YE+ R +E+D+ EA ++SL K G +
Sbjct: 407 QVVLFDGFMRVYEEG-----RDDVADEDDKRLPQIMEGEALKFVSSLAAQAEKAGKEASV 461
Query: 820 ----GEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRIL 875
G V QHHTQPP RY+E +LVK++EELGIGRPSTYAS + +QDR YV L
Sbjct: 462 LSDNGAVLALQHHTQPPPRYTEATLVKRMEELGIGRPSTYASVITTIQDREYVRKDKNRL 521
Query: 876 YPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTC 935
+PE +GR+V+ FL ++F + Y FTA++E ELD+VSAG ++K LL +W FS+
Sbjct: 522 FPEDKGRIVTIFLLNFFRKYVGYEFTANLEEELDDVSAGERDYKDLLGRFWRDFSAAIAE 581
Query: 936 AQSLHIHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCN 991
L I +V +L+ L+ P +D R+CP CG+G L K SR G F+GC
Sbjct: 582 TSELRITEVLDVLDDALAPQLYP--PREDGTDPRTCPKCGQGQLHLKTSRTGG--FVGCG 637
Query: 992 QHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGED 1051
+P CNY + + G+ E +R D+ +++ LKSG +G YVQ GE
Sbjct: 638 NYPECNY-TRPISGEGAE--GYERVLGEDD----------GDEIHLKSGRFGPYVQRGEA 684
Query: 1052 R-TGYLPKRASV-SHIKDV------DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARA 1103
P R+S+ KD + ITLE AL LL P ++G HP DG I L R
Sbjct: 685 TPENKKPPRSSLPKQGKDFLPGWGPNEITLEQALTLLTLPRDIGQHP-DGGIIQSNLGRF 743
Query: 1104 GFSVRHRRTIASVP--KNMKPN----DVTLEKALEFLSGKDV---RRCGRPKGKPKRE 1152
G + H+ P N+K ++ + +A+E L+ K RR R KP +E
Sbjct: 744 GPYIAHQLPDEEKPVYVNLKETLDVFEIGMNRAVEMLAEKRANPGRRGSRAAAKPLKE 801
>gi|189184232|ref|YP_001938017.1| DNA topoisomerase I [Orientia tsutsugamushi str. Ikeda]
gi|189181003|dbj|BAG40783.1| DNA topoisomerase I [Orientia tsutsugamushi str. Ikeda]
Length = 788
Score = 589 bits (1519), Expect = e-165, Method: Compositional matrix adjust.
Identities = 309/791 (39%), Positives = 485/791 (61%), Gaps = 37/791 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+++VES KAK I YLG ++V+ SYGHVRDL A++GSV P+ DF + +E+ + H+
Sbjct: 3 LLIVESPAKAKTINKYLGSDFQVVASYGHVRDLLAKAGSVLPEQDFLIKYEINPKSTRHI 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I +E + LA+DPDREGE+I+WHIVE+L+++ R++F+EIT+ +I
Sbjct: 63 KTICDLAKKSECIYLATDPDREGESISWHIVEVLKEKKIFA---NFKRIIFNEITKKAIG 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
ALQ R+I+ NLV A ARR+LDYL+GF++SPLLWRKLPGC+SAGRVQS L LIC+RE
Sbjct: 120 DALQQPRDINLNLVNAQQARRSLDYLVGFSLSPLLWRKLPGCKSAGRVQSVGLRLICERE 179
Query: 532 MEIDEFKPQEYWTV--EAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
EI +F QEYW + + + +K E + A L F +L + SI + ++A+DI
Sbjct: 180 EEISKFISQEYWNIHIDMISNKDEIVT-------AKLIEFDGNKLEKFSITNQSQAQDIV 232
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ I + F+VI +++ + P P+ITS+LQQ+AA KL F+A TM +AQKLYEG+ L
Sbjct: 233 KNIENQQFKVIDITRKQRKKSPPPPFITSSLQQEAAGKLGFTAKKTMTIAQKLYEGIDLN 292
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
+ + A LITYMRTD + +S + E R+ I +GS++ P++ R + KVKNAQEAHEA
Sbjct: 293 NESTA-LITYMRTDSVMLSKDFIDETRNFISSSFGSNYLPKQ-IRAFKSKVKNAQEAHEA 350
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRP +I P +L +++D LKLY LIW RT+ACQM+ + ++ + ++ V ++
Sbjct: 351 IRPININLTPELLLNKIEKDYLKLYELIWQRTVACQMENVILNLESINFASFNQLHVAKA 410
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S + F GF Y+++ ND E +L +L + + + + KQH T
Sbjct: 411 TGSTIAFDGFYKVYKEI------------NDEEENKKLLPNLSQNEVMQVKNILPKQHFT 458
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE +LVK LE+LGIGRPSTYA+ + VLQ+R+YV + + P+ +GR+V+AFL+
Sbjct: 459 EPPPRYSEATLVKTLEDLGIGRPSTYATIISVLQERDYVILDQKRFIPQNKGRLVTAFLT 518
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F + +Y FTA +E +LD+++ G+ EW+ +L ++W+ F++ + I + +E
Sbjct: 519 AFFKKYVEYDFTAKLEDQLDSIAKGMIEWQEILKNFWTGFNNNVQEIEQYKITDIIPQIE 578
Query: 950 KTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
+ LF + ++ + C +C G L K+S++GA F+ C+ +P CN+ + +
Sbjct: 579 TLLSNFLFPAQNDETDHKLCTLCKVGKLSLKLSKYGA--FLACDNYPSCNF-TRNIAAAF 635
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGY--LPKRASVSHI 1065
+ D L + N K IG+ ++ + LK GP+G+Y+Q GED T PKR +S I
Sbjct: 636 ENNDNLPKGKN---NKAIGYSDDMQKTIYLKEGPFGWYIQAGEDSTNKNDKPKRVPISVI 692
Query: 1066 KDV-DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
ITLE A++LL P +G +P + I + + R G ++H S+PKN +
Sbjct: 693 SSSPQDITLETAVKLLALPKVIGLNPNTNKEITVAVGRYGPYLKHDGKFISIPKNYDYLN 752
Query: 1125 VTLEKALEFLS 1135
+++ ++ ++
Sbjct: 753 LSINDCIKIIT 763
>gi|315122270|ref|YP_004062759.1| DNA topoisomerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495672|gb|ADR52271.1| DNA topoisomerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 840
Score = 589 bits (1519), Expect = e-165, Method: Compositional matrix adjust.
Identities = 310/765 (40%), Positives = 469/765 (61%), Gaps = 35/765 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+V++VES KAK I YLG Y+VL S+GHVRDL A+ GSV P+ +F M+WE ++ H
Sbjct: 2 NVIIVESPAKAKTISKYLGPDYKVLSSFGHVRDLPAKKGSVLPEKNFEMLWETDKSSQKH 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L++I A+ + LILA+DPDREGEAI+WH++++L+Q++ + E + RV F+ IT+ +
Sbjct: 62 LENIISAVKSSTLLILATDPDREGEAISWHVLDILRQRNLIGER-KIKRVSFNAITKKVV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++ R+++ +LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL LIC R
Sbjct: 121 LNAMENTRDLNLDLVNAYLARRALDYLVGFNLSPILWRKLPGARSAGRVQSVALRLICHR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E +I+ F +EYW + +L+ F A L F +R+ + SIG+ EA +
Sbjct: 181 ENQIECFVSEEYWLLSVLLETPRGDK-----FIARLVDFNGQRIEKTSIGNKKEADKLIS 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A + ++KN++ +++NP P + TSTLQQ A+++L FS +YTM++AQKLYEG+ +
Sbjct: 236 FLEKATY-IVKNTETKPIKRNPWPAFTTSTLQQAASSRLGFSPSYTMRIAQKLYEGIDV- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
+G GLITYMRTD +H+S +A +E+R I +G+ + P++ PR Y K KNAQEAHEA
Sbjct: 294 NGEVVGLITYMRTDSVHLSLDALEEVRRSISSNFGNSYLPDK-PRIYSVKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQ--IQVDIGNADESIVF 767
IRP D LP+ + LD D +LY+LIW R++A QM A + I +D D+
Sbjct: 353 IRPNDFNFLPSEMKKFLDSDQFQLYNLIWKRSVASQMASAEFERTTISIDATYEDQIAHL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF +E+ +N++ + + +L + + L E QH
Sbjct: 413 RTVGSCLRFDGFLKVWEN---------QNDQENNSDEDKLLPCINKNEKLLAKETNASQH 463
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+ P RYSE SL+KK+EELGIGRPSTYA+ L+ L R Y+ ++ R L+P+ GR+V+AF
Sbjct: 464 FTEAPLRYSESSLIKKMEELGIGRPSTYAAILETLSKRRYIVIEKRKLFPQNTGRIVTAF 523
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L ++FS +Y FTAD+E +LD +S+G +WK +L ++W F + L V +
Sbjct: 524 LENFFSRYVEYDFTADLEEKLDKISSGKLDWKEVLHEFWKEFIEKIDSTKELRTSNVLDI 583
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKV-SRFGAGYFIGCNQHPRCNYIAKTLY 1004
L T +F + N + R+CP C + L K+ S++GA F+GC +P C Y +
Sbjct: 584 LNDTLSSVIFPAKDNNEDSRTCPSCQKNPLSIKLSSKYGA--FVGCTNYPECKYTRQLTT 641
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSH 1064
+ + ++ N EP L+G P +KE + L+SG +GFYVQ G+ + KR +
Sbjct: 642 SN---QQYIEENL---EPLLLGDDPETKEPITLRSGRFGFYVQRGDGKDA---KRCGLPK 692
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
D +SI + AL L+ P +G HP+ + I+ + + G ++H
Sbjct: 693 NWDRESIDYDKALSLISLPREIGIHPETQKSIIASMGKYGCYLKH 737
>gi|77462727|ref|YP_352231.1| DNA topoisomerase I [Rhodobacter sphaeroides 2.4.1]
gi|221638588|ref|YP_002524850.1| DNA topoisomerase I [Rhodobacter sphaeroides KD131]
gi|332557609|ref|ZP_08411931.1| DNA topoisomerase I subunit omega [Rhodobacter sphaeroides WS8N]
gi|77387145|gb|ABA78330.1| DNA topoisomerase I [Rhodobacter sphaeroides 2.4.1]
gi|221159369|gb|ACM00349.1| DNA topoisomerase I [Rhodobacter sphaeroides KD131]
gi|332275321|gb|EGJ20636.1| DNA topoisomerase I subunit omega [Rhodobacter sphaeroides WS8N]
Length = 884
Score = 589 bits (1518), Expect = e-165, Method: Compositional matrix adjust.
Identities = 338/797 (42%), Positives = 465/797 (58%), Gaps = 38/797 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y VL SYGHVRDL + GSV P+ +F+M WEV + + H
Sbjct: 2 AVVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPPKDGSVDPEHEFAMTWEVAADSKKH 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+++I AL + LILA+DPDREGEAI+WH+ E L +L + TV RV F+ IT++++
Sbjct: 62 VRAIADALKTDDTLILATDPDREGEAISWHLQEALAS--SLKKGKTVRRVTFNAITKSAV 119
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++A RE+D LV+AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS L LI +R
Sbjct: 120 TEAMKAPREVDTALVEAYLARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVCLRLIVER 179
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
EMEI+ F+ +E+WTV AVL F A LT K+L + + + A+ Q
Sbjct: 180 EMEIEAFRAREFWTVSAVLATPRGQE-----FEARLTVLGGKKLEKFDLATSEAAELAVQ 234
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +V + R P++TSTLQQ+A+ K A M AQ+LYE
Sbjct: 235 AVTSRPLKVASVEAKPASRNPSAPFMTSTLQQEASRKFGMGAKQCMSAAQRLYE------ 288
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
AG ITYMRTDG+ ++ EA R I R+G+++ P+ PR Y K KNAQEAHE I
Sbjct: 289 ---AGHITYMRTDGIDMAPEAVMAARDEIKRRFGANYVPD-SPRMYKNKAKNAQEAHECI 344
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ P L GL D D KLY LIW RT+A QM A + + V+I + D + R++
Sbjct: 345 RPTDMSASPEKL-GLTDTDQRKLYELIWKRTLASQMAAARLERTTVEIASPDGQVGLRAT 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
V F GF YE+ E++E L + + + + +QHHTQ
Sbjct: 404 GQVVLFDGFLKVYEEGRDDRSDGDEDDEGR-------LPQIMANEAVEKKSITPEQHHTQ 456
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E +LVK++EELGIGRPSTYAS + +QDR YV L PE +GR+V+AFL++
Sbjct: 457 PPPRYTEATLVKRMEELGIGRPSTYASIVSTIQDREYVRKDKNRLIPEDKGRLVTAFLAN 516
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + +Y FTAD+E ELD+VSAG +K +L +W FS+ L I +V L++
Sbjct: 517 FFRKYVEYDFTADLEGELDDVSAGERNYKEVLARFWRDFSAAVAETADLRIGEVLDKLDE 576
Query: 951 TFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
L+ P+ R CP CG G L K +R G G FIGC +P C Y + + D
Sbjct: 577 FLAPHLYPPRPDGSDPRICPTCGSGRLHLKTAR-GGGAFIGCGNYPDCRY-TRPISVTGD 634
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPK--RASVSHIK 1066
EE+ + + KL+GH + L+SG +G YVQ GE T +PK RAS+
Sbjct: 635 EENAISPDG-----KLLGHD-EDGAPISLRSGRFGPYVQKGE-VTAEVPKPPRASLPKGW 687
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
D++ L+ AL LL P +G+HP+DGQP+ + R G V+H T A++P + +
Sbjct: 688 APDTVDLDRALMLLNLPRLVGSHPEDGQPVEAAIGRYGPYVKHGSTYANLPDVEEVFTIG 747
Query: 1127 LEKALEFLSGKDVRRCG 1143
+ +A+E L+ K R G
Sbjct: 748 MNRAVEVLAQKAAGRRG 764
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 22/127 (17%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+L+G HP + V G YG YV+ G A++ +++V +I + A+E+L
Sbjct: 704 PRLVGSHPEDGQPVEAAIGRYGPYVKHGS-------TYANLPDVEEVFTIGMNRAVEVLA 756
Query: 1082 Y-------------PV-NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
P+ LG HP DG + + R G V+ + A++PK ++P +TL
Sbjct: 757 QKAAGRRGASAPAQPIKELGEHP-DGGLLAVMPGRYGPYVKWGKVNATIPKGIEPEAITL 815
Query: 1128 EKALEFL 1134
E+AL +
Sbjct: 816 EEALALV 822
>gi|429207011|ref|ZP_19198271.1| DNA topoisomerase I [Rhodobacter sp. AKP1]
gi|428190006|gb|EKX58558.1| DNA topoisomerase I [Rhodobacter sp. AKP1]
Length = 884
Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust.
Identities = 338/797 (42%), Positives = 464/797 (58%), Gaps = 38/797 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y VL SYGHVRDL + GSV P+ +F+M WEV + + H
Sbjct: 2 AVVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPPKDGSVDPEHEFAMTWEVAADSKKH 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+++I AL + LILA+DPDREGEAI+WH+ E L +L + TV RV F+ IT++++
Sbjct: 62 VRAIADALKTDDTLILATDPDREGEAISWHLQEALAS--SLKKGKTVRRVTFNAITKSAV 119
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++A RE+D LV+AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS L LI +R
Sbjct: 120 TEAMKAPREVDTALVEAYLARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVCLRLIVER 179
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
EMEI+ F+ +E+WTV AVL F A LT K+L + + + A+ Q
Sbjct: 180 EMEIEAFRAREFWTVSAVLATPRGQE-----FEARLTVLGGKKLEKFDLATSEAAELAVQ 234
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +V + R P++TSTLQQ+A+ K A M AQ+LYE
Sbjct: 235 AVTSRPLKVASVEAKPASRNPSAPFMTSTLQQEASRKFGMGAKQCMSAAQRLYE------ 288
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
AG ITYMRTDG+ ++ EA R I R+G+++ P+ PR Y K KNAQEAHE I
Sbjct: 289 ---AGHITYMRTDGIDMAPEAVMAARDEIKRRFGANYVPD-SPRMYKNKAKNAQEAHECI 344
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ P L GL D D KLY LIW RT+A QM A + + V+I + D + R++
Sbjct: 345 RPTDMSASPEKL-GLTDTDQRKLYELIWKRTLASQMAAARLERTTVEIASPDGQVGLRAT 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
V F GF YE+ E++E L + + + + +QHHTQ
Sbjct: 404 GQVVLFDGFLKVYEEGRDDRSDGDEDDEGR-------LPQIMANEAVEKKSITPEQHHTQ 456
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E +LVK++EELGIGRPSTYAS + +QDR YV L PE +GR+V+AFL++
Sbjct: 457 PPPRYTEATLVKRMEELGIGRPSTYASIVSTIQDREYVRKDKNRLIPEDKGRLVTAFLAN 516
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + +Y FTAD+E ELD+VSAG +K +L +W FS+ L I +V L+
Sbjct: 517 FFRKYVEYDFTADLEGELDDVSAGERNYKEVLARFWRDFSAAVAETADLRIGEVLDKLDD 576
Query: 951 TFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
L+ P+ R CP CG G L K +R G G FIGC +P C Y + + D
Sbjct: 577 FLAPHLYPPRPDGSDPRICPTCGSGRLHLKTAR-GGGAFIGCGNYPDCRY-TRPISVTGD 634
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPK--RASVSHIK 1066
EE+ + + KL+GH + L+SG +G YVQ GE T +PK RAS+
Sbjct: 635 EENAISPDG-----KLLGHD-EDGAPISLRSGRFGPYVQKGE-VTAEVPKPPRASLPKGW 687
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
D++ L+ AL LL P +G+HP+DGQP+ + R G V+H T A++P + +
Sbjct: 688 APDTVDLDRALMLLNLPRLVGSHPEDGQPVEAAIGRYGPYVKHGSTYANLPDVEEVFTIG 747
Query: 1127 LEKALEFLSGKDVRRCG 1143
+ +A+E L+ K R G
Sbjct: 748 MNRAVEVLAQKAAGRRG 764
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 22/127 (17%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+L+G HP + V G YG YV+ G A++ +++V +I + A+E+L
Sbjct: 704 PRLVGSHPEDGQPVEAAIGRYGPYVKHGS-------TYANLPDVEEVFTIGMNRAVEVLA 756
Query: 1082 Y-------------PV-NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
P+ LG HP DG + + R G V+ + A++PK ++P +TL
Sbjct: 757 QKAAGRRGASAPAQPIKELGEHP-DGGILAVMPGRYGPYVKWGKVNATIPKGIEPEAITL 815
Query: 1128 EKALEFL 1134
E+AL +
Sbjct: 816 EEALALV 822
>gi|259417688|ref|ZP_05741607.1| DNA topoisomerase I [Silicibacter sp. TrichCH4B]
gi|259346594|gb|EEW58408.1| DNA topoisomerase I [Silicibacter sp. TrichCH4B]
Length = 884
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 348/811 (42%), Positives = 466/811 (57%), Gaps = 72/811 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL A++GSV PDDDF+M WEV + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPAKNGSVEPDDDFAMTWEVGNDSKKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
++I AL LILA+DPDREGEAI+WH+ E L ++ ++ ++ V RV F+ IT+ ++
Sbjct: 63 RAIAEALKNDNALILATDPDREGEAISWHLQEALTKRRSIKKDTDVKRVTFNAITKDAVA 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMKNPRDVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F PQEYW+V A L SF A LT ++L++ S+ + T A+ Q
Sbjct: 183 MEIEAFNPQEYWSVRANLTTPRGQ-----SFEARLTVLGGEKLDKFSLANSTAAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
++S V+ + R P++TSTLQQ+A+ K A M AQ+LYE
Sbjct: 238 VSSRKMSVLSVEAKPAARNPSAPFMTSTLQQEASRKFGMGAKQCMNAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AGLITYMRTDG+ ++ EA R I +RYG + P E PR Y K KNAQEAHE IR
Sbjct: 291 --AGLITYMRTDGIDMAPEAVTAARDEIAKRYGKDYVPGE-PRIYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ R A L + ++D KLY LIW RT+ACQM A + + VDIG+ D+ +V R++
Sbjct: 348 PTDMSRDAASLK-VTEDDQRKLYDLIWKRTLACQMAGARLERTTVDIGSDDKQVVLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRH-------EAFAILNSL--------KTGDP 816
V F GF YE+ + +E+D+ EA SL K G
Sbjct: 407 QVVLFDGFMRVYEEGRDDVV-----DEDDKRLPQIMQGEALKFAGSLAAQAEKAGKDGSV 461
Query: 817 LYLGEVELK-QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRIL 875
L L QHHTQPP RY+E +LVK++EELGIGRPSTYAS + +QDR YV L
Sbjct: 462 LSQDGATLALQHHTQPPPRYTEATLVKRMEELGIGRPSTYASVITTIQDREYVRKDKNRL 521
Query: 876 YPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTC 935
+PE +GR+V+ FL ++F +Y FTA +E +LD+VSAG ++K LL +W FS+
Sbjct: 522 FPEDKGRIVTIFLLNFFKRYVEYDFTAALENQLDDVSAGGKDYKELLDSFWRDFSAAIAE 581
Query: 936 AQSLHIHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCN 991
L I +V +L++ L+ P +D R CP CG G L K SR G F+GC
Sbjct: 582 TSDLRISEVLDILDEALAPQLYP--PREDGGDPRLCPKCGAGQLHLKTSRTGG--FVGCG 637
Query: 992 QHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGED 1051
+P CNY + + G+ E +R DE +++ LKSG +G YVQ GE
Sbjct: 638 NYPECNY-TRPISGEGAE--GYERILGEDE----------GDEIHLKSGRFGPYVQRGEA 684
Query: 1052 R-TGYLPKRASV-SHIKDV------DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARA 1103
P R+S+ KD + ITLE A+ LL P +G HP DG + L R
Sbjct: 685 TPENKKPPRSSLPKQGKDYLPGWGPNDITLEQAVTLLTLPREIGAHP-DGGVVSSNLGRF 743
Query: 1104 GFSVRHRRTIASVPKNMKPNDVTLEKALEFL 1134
G + H+R P KP V L++ L+
Sbjct: 744 GPYIMHQR-----PDEEKPVYVNLKETLDVF 769
>gi|381168604|ref|ZP_09877798.1| DNA topoisomerase I [Phaeospirillum molischianum DSM 120]
gi|380682464|emb|CCG42616.1| DNA topoisomerase I [Phaeospirillum molischianum DSM 120]
Length = 906
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 314/702 (44%), Positives = 444/702 (63%), Gaps = 27/702 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+VVVES KAK I YLG ++V+ S+GH+RDL AR GSVRPD++F+M WE+ + H+
Sbjct: 3 IVVVESPAKAKTINKYLGSDFQVVASFGHIRDLPARDGSVRPDENFAMDWEIDPKSERHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K I + A++L LA+DPDREGEAI+WH+ +L+ + AL + + V RVVF+EIT+ ++
Sbjct: 63 KEITSLVKEADHLFLATDPDREGEAISWHVKRVLEDRKAL-KGVEVKRVVFNEITKTAVL 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LIC RE
Sbjct: 122 DAMRNPRDIDQELVDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICQRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F +EYWT+ A + L A LTH ++L++ + + A+ E +
Sbjct: 182 SEIESFIAREYWTLGADFLTPKGALLS-----AGLTHLDGRKLDKFDLPNEATARAAEAR 236
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
A ++V + ++ R P+ TSTLQQ+A+ KL+ +A TM+LAQ+LYEGV + G
Sbjct: 237 AAIATYKVSEVERKRAKRHPFPPFTTSTLQQEASRKLHLAAARTMQLAQRLYEGVDI-GG 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ ++ EA R++I +G+ + P PR Y K KNAQEAHEAIR
Sbjct: 296 ETVGLITYMRTDGVQMAAEAISSARAVIGATFGASYVPS-APRVYKTKAKNAQEAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ R P ++ LD D L+LY LIW RT+A QM A + Q+ VDI + ++VFR++
Sbjct: 355 PTDLSRRPEDVAHHLDRDQLRLYELIWKRTLASQMASAELDQVAVDIDGDNRAVVFRATG 414
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S V F GF Y ++ +++D +A +L + GD + ++ +QH TQP
Sbjct: 415 SMVVFDGFLKVYR---------EDRDDSDDEDAEKLLPDVAEGDAMERKDLRAEQHFTQP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P R++E SLVK+LEELGIGRPSTYAS + VLQDR+YV + R PE RGR+V+AFL +
Sbjct: 466 PPRFTEASLVKRLEELGIGRPSTYASIISVLQDRDYVRLDQRRFVPEDRGRLVTAFLESF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F +Y+FTA++E +LD+VS G +WK +L +W FS+ + L + QV L++
Sbjct: 526 FGRYVEYNFTAELENQLDDVSGGRIDWKTVLNGFWKAFSASVEDTRDLRVAQVLDALDEL 585
Query: 952 FGDSLFA-SLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDE 1009
G F KD R+CP C G L K+ +FGA FIGC+ +P C + G + E
Sbjct: 586 LGPHFFPDDGSGKDPRACPTCHTGRLSLKLGKFGA--FIGCSTYPECRFTRPLTSGGEGE 643
Query: 1010 EDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGED 1051
++ + PK +G+ PA+ V L+ GPYG YVQLG++
Sbjct: 644 DEVRE------GPKELGNDPATGLPVTLRKGPYGHYVQLGDE 679
>gi|149915651|ref|ZP_01904177.1| DNA topoisomerase I [Roseobacter sp. AzwK-3b]
gi|149810543|gb|EDM70386.1| DNA topoisomerase I [Roseobacter sp. AzwK-3b]
Length = 839
Score = 587 bits (1514), Expect = e-164, Method: Compositional matrix adjust.
Identities = 344/811 (42%), Positives = 477/811 (58%), Gaps = 56/811 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV P+ DF M WE+ + H+
Sbjct: 3 VVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPPKDGSVDPEHDFDMKWEIGVDSRKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL + LILA+DPDREGEAI+WH+ E L+++ A+ + V+RVVF+ IT+ ++
Sbjct: 63 KAIADALKDDDTLILATDPDREGEAISWHLEEALRKRKAIGKTTAVSRVVFNAITKTAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ REID +LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMKNPREIDGDLVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ FK +EYW+V+A+L F A LT K+L++ I + T+A+ Q
Sbjct: 183 MEIEAFKAREYWSVKALLSTPRGQ-----DFEARLTSLAGKKLDRYDIENATQAEMAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I S + V + R P++TSTLQQ+A+ K A TM AQ+LYE
Sbjct: 238 ITSRDLTVTSVEAKPASRNPSPPFMTSTLQQEASRKFGMGARQTMSAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R I E YG+ + P PR Y K KNAQEAHE IR
Sbjct: 291 --AGYITYMRTDGIDMAPEAVHAARDAIKELYGAEYVP-SSPRMYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT++ R + + D D KLY LIW RT+ACQM+ A + + V+IG+ D + R++
Sbjct: 348 PTEMTRDASAIK-TTDADQRKLYDLIWKRTLACQMESARLERTTVEIGSRDGQVGLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F GF YE+ G +++++R L + GD V +QH TQP
Sbjct: 407 QVVLFDGFLKIYEE---GRDDQAGDDDDNR------LPQITEGDKTEKRSVTPEQHFTQP 457
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVKK+EELGIGRPSTYAS + +Q+R YV L PE +GR+V+ FL ++
Sbjct: 458 PPRYTEATLVKKMEELGIGRPSTYASIVTTIQEREYVRKDKNRLIPEDKGRIVTIFLLNF 517
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + Y FTA++E ELD VSAG ++K +L +W FS+ + L I +V +L++
Sbjct: 518 FRKYVGYEFTANLEDELDKVSAGDLDYKQVLNRFWRDFSAAISETSELRITEVLDVLDEA 577
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
L+ P +D RSCP+CGEG+L K SR G F+GC+++P C + + + G+
Sbjct: 578 LAPQLYP--PREDGSDPRSCPLCGEGSLHLKTSRTGG--FVGCSRYPECRF-TRPIGGEG 632
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHIK 1066
E +++G +++ L+SG +G YVQ GE P RAS+
Sbjct: 633 AEGGD----------RVLGED--QGDEISLRSGRFGPYVQRGEVTEENKKPPRASLPKGW 680
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK-PNDV 1125
D + LE AL LL P +G HP+DG+ + + R G V+H + A N+K P+DV
Sbjct: 681 SPDDMDLEKALMLLNLPREIGPHPEDGEMVEAGIGRYGPFVKHGKLYA----NLKDPDDV 736
Query: 1126 ---TLEKALEFLSGKDVRRC-GRPKGKPKRE 1152
+ +A+E L+ K R GR KP +E
Sbjct: 737 FTIGMNRAVEELAKKAASRGQGRTAAKPIKE 767
>gi|254780306|ref|YP_003064719.1| DNA topoisomerase I [Candidatus Liberibacter asiaticus str. psy62]
gi|254039983|gb|ACT56779.1| DNA topoisomerase I [Candidatus Liberibacter asiaticus str. psy62]
Length = 837
Score = 587 bits (1514), Expect = e-164, Method: Compositional matrix adjust.
Identities = 321/805 (39%), Positives = 481/805 (59%), Gaps = 37/805 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+V++VES KAK I YLG Y+VL S+GH+RDL A+ GSV P+ +F M+W + ++ H
Sbjct: 2 NVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAKKGSVLPEKEFEMIWNIDPSSQKH 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L++I A+ + LILA+DPDREGEAI+WH++++L+Q++ L E + RV F+ IT+ +
Sbjct: 62 LQNIIHAVKSSTILILATDPDREGEAISWHVLDVLRQKN-LIEKTKIQRVSFNAITKQVV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+++ R+I+ +LV AYLARRALDYL+GFN+SP+LW+KLPG +SAGRVQS AL LIC+R
Sbjct: 121 LNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLPGARSAGRVQSVALRLICNR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E +I+ F +EYW++ +L+ + F AHLT F +R+ + SI + EA D+
Sbjct: 181 ENQIESFVSEEYWSLSVLLETPRNDK-----FTAHLTDFNGQRIEKKSISNKKEADDLIS 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A + V K + +++NP P + TSTLQQ A+++L FSA++TM++AQKLYEG+ +
Sbjct: 236 FVKKATYSVEKIENKP-IKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDV- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
+G GLITYMRTDG+H+S +A + +R I YG H+ PE+ PR Y K KNAQEAHEA
Sbjct: 294 NGEIVGLITYMRTDGVHMSPDALEAVRRSITSHYGDHYLPEK-PRIYSSKSKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRP D LP+ + LD D +LY+LIW R++A QM A + V+I D+
Sbjct: 353 IRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S + F GF +E+ ++N E D +L + + L E QH
Sbjct: 413 RTTGSLLCFDGFLKVWEN----QYDQEKNSEED-----ILLPYISANEQLIATETNASQH 463
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SL+KK+EE+GIGRPSTYA+ L+ L R YV + R + P+ GR+V+AF
Sbjct: 464 FTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAF 523
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L ++FS+ +Y FTAD+E +LD +S G WK +L ++W F + L I V +
Sbjct: 524 LENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDI 583
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKV-SRFGAGYFIGCNQHPRCNYIAKTLY 1004
L T +F N + R+CP C +L K+ S++GA F+GC +P C Y +
Sbjct: 584 LNDTLSSVIFPPKENNEDSRTCPECHTHSLSLKLSSKYGA--FVGCTNYPECKYTRQLTS 641
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSH 1064
D + + E L+G+ +KE V L+SG +G YVQ G+ + KR S+
Sbjct: 642 NPQDIPE-------MKESVLLGNDLETKESVTLRSGRFGLYVQRGDGKDA---KRCSLPK 691
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
DS+ + A+ LL P +G HP+ + I+ + G+ + H + +
Sbjct: 692 TWKSDSVDYDKAMSLLSLPREIGIHPETQKNIIAGTGKYGYYLNHDGAYTKLESIEQVLT 751
Query: 1125 VTLEKALEFLS-GKDVRRCGRPKGK 1148
+ LE+A+ ++ K + + R K
Sbjct: 752 IDLEQAISCITEKKKIEKSSRKNSK 776
>gi|310816235|ref|YP_003964199.1| DNA topoisomerase I [Ketogulonicigenium vulgare Y25]
gi|385233740|ref|YP_005795082.1| DNA topoisomerase I [Ketogulonicigenium vulgare WSH-001]
gi|308754970|gb|ADO42899.1| DNA topoisomerase I [Ketogulonicigenium vulgare Y25]
gi|343462651|gb|AEM41086.1| DNA topoisomerase I [Ketogulonicigenium vulgare WSH-001]
Length = 883
Score = 587 bits (1513), Expect = e-164, Method: Compositional matrix adjust.
Identities = 334/790 (42%), Positives = 458/790 (57%), Gaps = 40/790 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y+VL SYGHVRDL + GSV D+DF+M WEV + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGSDYQVLASYGHVRDLPPKDGSVDTDEDFAMTWEVDANSKKHI 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL NLILA+DPDREGEAI+WH+VE L + A+ ++ V+RVVF+ IT++++
Sbjct: 63 KAIADALKADPNLILATDPDREGEAISWHLVEALTDRKAIKKDTPVSRVVFNAITKSAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+Q R++DA LV+AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS L +I DRE
Sbjct: 123 EAMQNPRQVDAPLVEAYLARRALDYLVGFKLSPVLWRKLPGAKSAGRVQSVCLRVIVDRE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
+EI+ F+ QEYWTV A ++ F A L K+L++ +G+ A+ Q
Sbjct: 183 VEIEAFRAQEYWTVAAEIETPRGQ-----IFTARLVTLGGKKLDKFDLGNQVAAEMAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S V + R P++TSTLQQ+A+ K A TM AQ+LYE
Sbjct: 238 VTSRALSVQGVEAKPAQRHPSAPFMTSTLQQEASRKFGMGAKATMSAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AGLITYMRTDG+ ++ EA R I +++G+ + P PR Y K KNAQEAHE IR
Sbjct: 291 --AGLITYMRTDGIDMAPEAVMAARDAIRDKFGADYLP-ASPRMYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ R ++D D KLY LI+ RT+A QM A + + VDIG AD + R++
Sbjct: 348 PTDMTR-GVEQQKIVDADQRKLYDLIYKRTIASQMAAARLERTTVDIGAADGQVGLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F GF A YE E ++ E L + G+ L V QH TQP
Sbjct: 407 QVVLFDGFLAIYE----------EGRDDSTDEDEGRLPQMMQGEALKKLAVTPDQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVK++EELGIGRPSTYAS + +QDR YV L P+ +GR+V+AFL +Y
Sbjct: 457 PPRYTEATLVKRMEELGIGRPSTYASIVTTIQDRGYVQKDKNRLIPQDKGRLVTAFLENY 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F +Y FTA +E +LD VSAG ++K +L +W FS+ L I V + L +
Sbjct: 517 FPRYVEYDFTAGLEDQLDKVSAGDADYKDVLRQFWRDFSAALNETSELRITDVLEKLNEV 576
Query: 952 FGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDE 1009
+F P+ R+CP CG G L + +R G G FIGC+ +P C + +G +
Sbjct: 577 LSPIMFPPKPDGSDPRACPNCGNGHLSMRTARSG-GAFIGCSNYPECRFTRP--FGPPE- 632
Query: 1010 EDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPK--RASVSHIKD 1067
L + +L+GH + + L+ G +G YVQ GE T +PK RAS+
Sbjct: 633 ---LAEGAIGPDGRLLGHD--EGDPITLRDGRFGPYVQRGE-ATEEVPKPPRASLPKTWS 686
Query: 1068 VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
D +TLE A+ LL P +G HP+DG I L R G ++H T A++ + ++ +
Sbjct: 687 PDEVTLERAVSLLNLPRPVGPHPEDGVLIEAGLGRFGPFIKHGSTYANLKSIDEVFEIGM 746
Query: 1128 EKALEFLSGK 1137
A+E L+ K
Sbjct: 747 NHAVELLAQK 756
>gi|126461619|ref|YP_001042733.1| DNA topoisomerase I [Rhodobacter sphaeroides ATCC 17029]
gi|126103283|gb|ABN75961.1| DNA topoisomerase I [Rhodobacter sphaeroides ATCC 17029]
Length = 884
Score = 587 bits (1513), Expect = e-164, Method: Compositional matrix adjust.
Identities = 338/797 (42%), Positives = 464/797 (58%), Gaps = 38/797 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y VL SYGHVRDL + GSV P+ +F+M WEV + + H
Sbjct: 2 AVVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPPKDGSVDPEHEFAMTWEVAADSKKH 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+++I AL + LILA+DPDREGEAI+WH+ E L +L + TV RV F+ IT++++
Sbjct: 62 VRAIADALKTDDTLILATDPDREGEAISWHLQEALAS--SLKKGKTVRRVTFNAITKSAV 119
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++A RE+D LV+AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS L LI +R
Sbjct: 120 TEAMKAPREVDTALVEAYLARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVCLRLIVER 179
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
EMEI+ F+ +E+WTV AVL F A LT K+L + + + A+ Q
Sbjct: 180 EMEIEAFRAREFWTVSAVLATPRGQE-----FEARLTVLGGKKLEKFDLATSEAAELAVQ 234
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +V + R P++TSTLQQ+A+ K A M AQ+LYE
Sbjct: 235 AVTSRPLKVASVEAKPASRNPSAPFMTSTLQQEASRKFGMGAKQCMSAAQRLYE------ 288
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
AG ITYMRTDG+ ++ EA R I R+G+++ P+ PR Y K KNAQEAHE I
Sbjct: 289 ---AGHITYMRTDGIDMAPEAVMAARDEIKRRFGANYVPDS-PRMYKNKAKNAQEAHECI 344
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ P L GL D D KLY LIW RT+A QM A + + V+I + D + R++
Sbjct: 345 RPTDMSASPEKL-GLTDTDQRKLYELIWKRTLASQMAAARLERTTVEIASPDGQVGLRAT 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
V F GF YE+ E++E L + + + + +QHHTQ
Sbjct: 404 GQVVLFDGFLKVYEEGRDDRSDGDEDDEGR-------LPQIMANEAVEKKCITPEQHHTQ 456
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E +LVK++EELGIGRPSTYAS + +QDR YV L PE +GR+V+AFL++
Sbjct: 457 PPPRYTEATLVKRMEELGIGRPSTYASIVSTIQDREYVRKDKNRLIPEDKGRLVTAFLAN 516
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + +Y FTAD+E ELD+VSAG +K +L +W FS+ L I +V L+
Sbjct: 517 FFRKYVEYDFTADLEGELDDVSAGERNYKEVLARFWRDFSAAVAETADLRIGEVLDKLDD 576
Query: 951 TFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
L+ P+ R CP CG G L K +R G G FIGC +P C Y + + D
Sbjct: 577 FLAPHLYPPRPDGSDPRICPTCGSGRLHLKTAR-GGGAFIGCGNYPDCRY-TRPISVTGD 634
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPK--RASVSHIK 1066
EE+ + + KL+GH + L+SG +G YVQ GE T +PK RAS+
Sbjct: 635 EENAISPDG-----KLLGHD-EDGAPISLRSGRFGPYVQKGE-VTAEVPKPPRASLPKGW 687
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
D++ L+ AL LL P +G+HP+DGQP+ + R G V+H T A++P + +
Sbjct: 688 APDTVDLDRALMLLNLPRLVGSHPEDGQPVEAAIGRYGPYVKHGSTYANLPDVEEVFTIG 747
Query: 1127 LEKALEFLSGKDVRRCG 1143
+ +A+E L+ K R G
Sbjct: 748 MNRAVEVLAQKAAGRRG 764
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 22/127 (17%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+L+G HP + V G YG YV+ G A++ +++V +I + A+E+L
Sbjct: 704 PRLVGSHPEDGQPVEAAIGRYGPYVKHGS-------TYANLPDVEEVFTIGMNRAVEVLA 756
Query: 1082 Y-------------PVN-LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
P+ LG HP DG + + R G V+ + A++PK ++P +TL
Sbjct: 757 QKAAGRRGASAPAQPIKELGEHP-DGGILAVMPGRYGPYVKWGKVNATIPKGIEPEAITL 815
Query: 1128 EKALEFL 1134
E+AL +
Sbjct: 816 EEALALV 822
>gi|254486464|ref|ZP_05099669.1| DNA topoisomerase I [Roseobacter sp. GAI101]
gi|214043333|gb|EEB83971.1| DNA topoisomerase I [Roseobacter sp. GAI101]
Length = 881
Score = 587 bits (1512), Expect = e-164, Method: Compositional matrix adjust.
Identities = 338/814 (41%), Positives = 472/814 (57%), Gaps = 48/814 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV D+DF M WE+ +A+ H+
Sbjct: 3 VVVVESPAKAKTINSYLGSNYTVLASYGHVRDLPPKDGSVDTDNDFDMKWEIAAASKKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L Q+ ++ ++ V+RVVF+ IT+A++
Sbjct: 63 KAIADALKDDNELILATDPDREGEAISWHLQEALTQRKSIKKDTPVSRVVFNAITKAAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMKNPRQVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVTLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F+ +EYWTV+A++ F A L K+L++ + + T+++ Q
Sbjct: 183 MEIEAFRNREYWTVKALVATPRGQ-----EFEARLVTLAGKKLDRFDLANDTQSEMAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
INS + V + R P++TSTLQQ+A+ K A TM AQ+LYE
Sbjct: 238 INSRDLTVTSVEAKPASRNPSAPFMTSTLQQEASRKFGMGARQTMSTAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R I +R+G+ + P PR Y K KNAQEAHE IR
Sbjct: 291 --AGHITYMRTDGIDMAPEAMNMARDAIKDRFGAEYVP-SSPRIYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ + A L L + D KLY LIW RT+ACQM+ A + + V+IG+ DE + R++
Sbjct: 348 PTDMSKDAAALK-LTEPDQRKLYDLIWKRTLACQMESARLERTTVEIGSKDEQVGLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V+F GF YE+ + +E+D+ L + GD + + +QH TQP
Sbjct: 407 QVVQFDGFLRVYEEGRDDVV-----DEDDKR-----LPQISQGDKMDKRAITPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVK++EELGIGRPSTYAS + +QDR YV + L+PE +GR+V+AFL +Y
Sbjct: 457 PPRYTEATLVKRMEELGIGRPSTYASVVTTIQDREYVRKEGNRLFPEDKGRLVTAFLENY 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + Y FTAD+E +LD VSA ++K +L +W FS+ L I +V + + +
Sbjct: 517 FRKYVGYDFTADLEDQLDKVSAADADYKDVLTRFWKDFSAAIAETADLRITEVLEKINEV 576
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
LF P +D R CP C G L + +R G G FIGC+ +P C Y +G
Sbjct: 577 LEPHLFP--PTEDGKDPRLCPNCEIGRLSMRTARSG-GAFIGCSNYPECRYTRP--FGPP 631
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHIK 1066
D E + + + KL+G + +V G +G YVQ G P R SV
Sbjct: 632 DPE--AEASAIPPDGKLLGEDQGDEIRVF--KGRFGPYVQRGPVTEENKKPPRQSVPKDW 687
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIAS---VPKNMKPN 1123
+ + LE AL LL P +G HP+DG + + R G ++H + + N++
Sbjct: 688 PAEELDLERALMLLSLPREIGPHPEDGIMVWANIGRYGPYIKHAPSTSDRGGTNANLEGL 747
Query: 1124 D----VTLEKALEFLSGKDVRRCGRPK-GKPKRE 1152
D V + +A++ L+ K R GR K KP RE
Sbjct: 748 DEVFTVGMNRAVQLLAEKVASRGGRGKAAKPIRE 781
>gi|126733566|ref|ZP_01749313.1| DNA topoisomerase I, putative [Roseobacter sp. CCS2]
gi|126716432|gb|EBA13296.1| DNA topoisomerase I, putative [Roseobacter sp. CCS2]
Length = 866
Score = 587 bits (1512), Expect = e-164, Method: Compositional matrix adjust.
Identities = 344/813 (42%), Positives = 479/813 (58%), Gaps = 45/813 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I GYLG Y VL SYGHVRDL + GSV PDDDF M WE+ S + H+
Sbjct: 3 VVVVESPAKAKKINGYLGSDYTVLASYGHVRDLPPKDGSVLPDDDFDMKWEIASDSKKHI 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L + A+ ++ V+RVVF+ IT++++
Sbjct: 63 KAIVDALKNDNELILATDPDREGEAISWHLTEALTAKKAIKKDTPVSRVVFNAITKSAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L +I +RE
Sbjct: 123 DAMANPRQVDEPLVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVCLRIIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F+ QEYWTV+A+L +F A LT K+L++ +G+ T+A+ Q
Sbjct: 183 MEIEAFRNQEYWTVKALLQSARGQ-----TFEARLTTLAGKKLDKFDLGNETQAEMAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I+S + VIK+ + +NP+ P++TSTLQQ+A+ K A TM +AQ+LYE
Sbjct: 238 ISSRDL-VIKSVEAKPATRNPSPPFMTSTLQQEASRKFGMGAKQTMSVAQRLYE------ 290
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
AGLITYMRTDG+ ++ EA R I ++G + P++ PR Y K KNAQEAHE I
Sbjct: 291 ---AGLITYMRTDGIDMAPEAVTGARDAIKAKFGDKYLPDQ-PRMYKNKAKNAQEAHECI 346
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT++ + + + D D KLY LI+ RTMA QM A + + VDI +ADE +V R++
Sbjct: 347 RPTEM-SVSTEDAKIADADQRKLYDLIYKRTMASQMAAAKLERTVVDITSADEQVVLRAN 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
+ F GF A YE+ G ++++ R L L G+ V +QH TQ
Sbjct: 406 GQVMVFDGFIAIYEE---GKDDSVVDDDDKR------LPQLTEGEKADKKSVNPEQHFTQ 456
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E +LVK++EELGIGRPSTYAS + +QDR YV L P+ +GR+V+AFL++
Sbjct: 457 PPPRYTEATLVKRMEELGIGRPSTYASIVTTIQDRGYVEKDKNRLIPQDKGRLVTAFLTN 516
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF + Y FTAD+E +LD VSAG ++K +L +W FS+ L I +V + + +
Sbjct: 517 YFRKYIGYDFTADLENQLDEVSAGDADYKKVLGQFWRDFSAAIAETADLRITEVLEKINE 576
Query: 951 TFGDSLFASLP--NKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
LF + R CP CG G L + +R G G FIGC+ +P C Y +G +
Sbjct: 577 VLEPHLFPPTEGGSDPRLCPNCGAGRLSMRTARSG-GAFIGCSNYPECRYT--RAFGPPN 633
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHIKD 1067
E L + E KL+G + ++ G +G Y Q GE PKR S+ +
Sbjct: 634 PEAEL--SAIPPEGKLLGTDEGDEIRIF--KGRFGPYAQRGEVTEDNKKPKRQSIPDGWE 689
Query: 1068 VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIA---SVPKNMKPND 1124
+ +TL+ AL LL P LG HP+DG + L R G ++H + + N++ D
Sbjct: 690 PEEVTLDQALMLLSLPRELGPHPEDGVAVWANLGRYGPYLKHAESTSHRGGTNANLESID 749
Query: 1125 ----VTLEKALEFLSGKDVRRCGRPKGK-PKRE 1152
V + +A++ L+ K R R K P RE
Sbjct: 750 EVWTVGMNRAVQLLAEKVASRGQRGKAAVPVRE 782
>gi|58584298|ref|YP_197871.1| topoisomerase IA, TopA [Wolbachia endosymbiont strain TRS of Brugia
malayi]
gi|58418614|gb|AAW70629.1| Topoisomerase IA, TopA [Wolbachia endosymbiont strain TRS of Brugia
malayi]
Length = 816
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 321/809 (39%), Positives = 494/809 (61%), Gaps = 49/809 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++++VES KA+ I YL ++V S+GHVRDL ++GSV PD+DF++ +E+ A +
Sbjct: 2 ALLIVESPAKARTISKYLSKEFKVAASFGHVRDLPVKNGSVDPDNDFAIKYEIIEKAEKY 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K + S ++ LA+DPDREGEAIAW+++E L+++ A+++ + RVVF+EIT+ ++
Sbjct: 62 VKELVKEASQTSDIYLATDPDREGEAIAWNVIEALKERKAINDKSNIYRVVFNEITKRAV 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A++ REI+ +LV+A ARRALDYL+GF++SPLLW KL G +SAGRVQS AL LIC+R
Sbjct: 122 QEAVKNPREINMDLVRAQQARRALDYLVGFSLSPLLWTKLSGSKSAGRVQSVALKLICER 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI +F QEYW++ A + + +F A L+H+ +K+L + I + EAK + +
Sbjct: 182 EDEISKFVSQEYWSIRAEIKDSKGE-----TFFAMLSHYDNKKLEKFDIKNEEEAKGLVK 236
Query: 591 KINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I S + V +R V++NP P+ITS+LQQDA NKL F+ M++AQ LYEG+ +
Sbjct: 237 QIESRQYAV-STVERKQVKRNPLPPFITSSLQQDAVNKLYFNVKNVMRIAQDLYEGIDI- 294
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG +I+DEA IR I YG+ + P + R+Y KKVKNAQEAHEA
Sbjct: 295 GGETVGLITYMRTDGFYIADEAVNSIRRSIKSLYGNKYLP-KSSRQYVKKVKNAQEAHEA 353
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPTDI R P + L + KLY LIW RT+A QM+ A + Q+ V+I + D+ ++ R+
Sbjct: 354 IRPTDIDRTPDSIKDYLTPEQFKLYGLIWKRTIASQMESAILDQVVVEISSTDQKVILRA 413
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S S + F GF Y++ N E +++ ++K G+ L V+ +QH T
Sbjct: 414 SGSIIFFDGFYKVYKN-------------NVDGEDESMIPTMKEGEECKLISVDPEQHFT 460
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP+RYSE S+VKK+EE+GIGRPSTYA+ + VLQDR YVT+ ++ P RG++V+ FL
Sbjct: 461 QPPSRYSEASIVKKMEEIGIGRPSTYAAIISVLQDREYVTLDNKRFIPSSRGKIVTIFLE 520
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F +Y FTA ME +LD +S G +WK L +W F ++ + + ++ +
Sbjct: 521 TFFQRCVEYDFTAQMEEKLDLISNGRADWKKELGYFWVPFFNHVNSVKQMTHDEIFNGIR 580
Query: 950 KTFGDSLFASLPNK---DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
D F S K ++ CP C +G I K++ AG F+GC+ +P C + K + G
Sbjct: 581 DLVVD-WFCSEEGKKEVNKKCPDCPDG--ILKLNFGKAGVFLGCSNYPTCTH-TKEITGS 636
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+D N + PK +G ++++V++K GP+G Y++ + K+ +VS K
Sbjct: 637 ND---------NSEYPKSLGIDGVTEQEVVIKKGPFGLYLEFNSESE----KKKTVSIPK 683
Query: 1067 D--VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN- 1123
D V+ I L A LL P +G HP+ G+ + + L R G+ + + S+ K+ K
Sbjct: 684 DINVNDIDLSTATRLLSLPKVIGEHPETGKEVKIGLGRFGYYIFYDSKYFSLKKSFKEVL 743
Query: 1124 DVTLEKALEFLSG---KDVRRCG-RPKGK 1148
++ L++A++ ++ K+++ G KGK
Sbjct: 744 EIQLDEAVQIIANSPRKELKSLGFNEKGK 772
>gi|407799293|ref|ZP_11146186.1| DNA topoisomerase I [Oceaniovalibus guishaninsula JLT2003]
gi|407058478|gb|EKE44421.1| DNA topoisomerase I [Oceaniovalibus guishaninsula JLT2003]
Length = 904
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 341/815 (41%), Positives = 471/815 (57%), Gaps = 49/815 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG + VL SYGHVRDL + GSV ++ F M WEV S + H+
Sbjct: 3 VVVVESPAKAKKINEYLGKDFTVLASYGHVRDLPPKDGSVDTENGFDMTWEVASDSKKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ + L+Q+ AL ++ V+RVVF+ IT++++
Sbjct: 63 KAIADALKDDPVLILATDPDREGEAISWHLEQTLRQRKALKKDTPVSRVVFNAITKSAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++DA LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 QAMEKPRQVDAPLVEAYLARRALDYLVGFNLSPVLWRKLPGSKSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F+P+EYW+V A+L + +F A LT K+L++ + T+A+ Q
Sbjct: 183 MEIEAFRPREYWSVRAMLTTPRNQ-----TFEARLTTLAGKKLDRFDLADATQAEMAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
++S V + R P++TSTLQQ+A+ K A TM AQ+LYE
Sbjct: 238 VSSRALHVASVEAKPGTRNPAPPFMTSTLQQEASRKFGMGAKATMSAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AGLITYMRTDG+ ++ EA + R +I YG + P + PR Y K KNAQEAHE IR
Sbjct: 291 --AGLITYMRTDGIDMAPEAVTDARRVIGATYGDGYVP-KSPRMYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + P +GL D D +LY LIW RT+A QM+ A + + V+I + D + R++
Sbjct: 348 PTAMATRPEK-AGLTDSDQRRLYDLIWKRTIASQMESARLERTTVEIESEDGQVGLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNS--LKTG-------DPLYLGE- 821
V F GF YE+ + E+EEN R A ++ +G D YL +
Sbjct: 407 QVVTFDGFLKVYEEGRDDS----ESEENRRLPQIARGDATPFASGSYTRGEDDASYLSKD 462
Query: 822 --VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEF 879
QHHTQPP RY+E +LVK++EELGIGRPSTYAS + +QDR YV + L+PE
Sbjct: 463 AATLATQHHTQPPPRYTEATLVKRMEELGIGRPSTYASIVTTIQDRGYVRKEQNRLFPED 522
Query: 880 RGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSL 939
+GR+V+AFLS+YF +Y FTAD+E +LD+VSAG +WK LL +W FS+ L
Sbjct: 523 KGRLVTAFLSNYFRRYVEYDFTADLEDQLDHVSAGDADWKELLARFWRDFSAAIAETADL 582
Query: 940 HIHQVEKMLEKTFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
I +V + + + LF P+ R CP C +G L + +R G G FIGC+ +P C
Sbjct: 583 RIGEVLEKINEVLEPHLFPPRPDGGDPRLCPNCEKGRLSMRTARSG-GAFIGCSNYPECR 641
Query: 998 YIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYL 1056
+ +G E D + E KL+G + + L G +G YVQ GE
Sbjct: 642 FTRP--FGPPVESD--EAPVVPPEGKLLGED--QGDAIWLHDGRFGPYVQRGEVTEDVKK 695
Query: 1057 PKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRR----- 1111
P R SV ++S+ L AL LL P +G HP+DG I + R G ++H
Sbjct: 696 PPRQSVPRDWPLESVDLARALMLLNLPREIGTHPEDGVKIWATIGRYGPYLKHADDPAAK 755
Query: 1112 --TIASVPKNMKPNDVTLEKALEFLSGKDVRRCGR 1144
A +P+ ++ + +A+E L+ K R GR
Sbjct: 756 GGKTAPLPELADVFEIGMNRAVEILAQKAASRPGR 790
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ IG HP K+ G YG Y++ +D K A + + DV I + A+E+L
Sbjct: 722 PREIGTHPEDGVKIWATIGRYGPYLKHADDPAAKGGKTAPLPELADVFEIGMNRAVEILA 781
Query: 1082 Y-------------PV-NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
P+ LG+HP DG P+ + R G V+ + A++PK +P VT+
Sbjct: 782 QKAASRPGRGAAAQPIKELGDHP-DGGPVAVMPGRFGPYVKWGKINATIPKGTEPEAVTM 840
Query: 1128 EKALEFL 1134
E ALE++
Sbjct: 841 EAALEWI 847
>gi|189022794|ref|YP_001932535.1| DNA topoisomerase I [Brucella abortus S19]
gi|189021368|gb|ACD74089.1| DNA topoisomerase I [Brucella abortus S19]
Length = 828
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 328/755 (43%), Positives = 452/755 (59%), Gaps = 32/755 (4%)
Query: 399 MVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVA 458
M WEV S + L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV
Sbjct: 1 MSWEVDSNSAKRLADIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVK 59
Query: 459 RVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGR 518
RV F+ IT+ ++ A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGR
Sbjct: 60 RVAFNAITKKAVLDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGR 119
Query: 519 VQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLS 578
VQS AL L+CDRE EI+ F +EYW + A+L + S F A LT K+L +L
Sbjct: 120 VQSVALRLVCDREAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLD 174
Query: 579 IGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKL 638
I + +A I + SANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++
Sbjct: 175 IKNGEQAGAIRTMLESANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQV 234
Query: 639 AQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFK 698
AQ+LYEGV + G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y
Sbjct: 235 AQRLYEGVDI-GGETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSS 292
Query: 699 KVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI 758
K KNAQEAHEAIRPTD R P + LDED +LY LIW R +A QMQ A + + VDI
Sbjct: 293 KAKNAQEAHEAIRPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDI 352
Query: 759 --GNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDP 816
N + + R++ S +F GF AAY D EE D E A L +++G+
Sbjct: 353 EATNGSRAAMLRANGSVTKFDGFLAAYMD---------HREEEDDDEESAKLPEIRSGEA 403
Query: 817 LYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILY 876
L +++ QH T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+ + R L
Sbjct: 404 LAREKIDATQHSTEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYIIIDKRKLI 463
Query: 877 PEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCA 936
PE +GR+V+AFL +F +Y FTAD+E +LD +S G WK +L D+W FS
Sbjct: 464 PEAKGRLVTAFLESFFERYVEYDFTADLEEKLDLISDGKLSWKEILRDFWRAFSGSVEDI 523
Query: 937 QSLHIHQVEKMLEKTFGDSLF-ASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHP 994
+ L + V L + +F A +D RSCP CG GTL K+ R+GA F+GC+ +P
Sbjct: 524 KELRVTNVLDALNEELAPLVFPAREDGRDPRSCPTCGTGTLSLKLGRYGA--FVGCSNYP 581
Query: 995 RCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTG 1054
C Y + L G+ + E DEPK +G P + E++ ++G +G Y+Q GE G
Sbjct: 582 ECKYT-RQLGGEANGE-----TAASDEPKPLGKDPFTGEQITARTGRFGPYIQRGE---G 632
Query: 1055 YLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIA 1114
KRAS+ +D++ E A+ LL P ++G HP+ G+ I + R G V H T A
Sbjct: 633 KEAKRASLPKGWTLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFA 692
Query: 1115 SVPKNMKPNDVTLEKALEFLSGKDVRRCGRPKGKP 1149
++ + V L +A+ L+ K + GR + P
Sbjct: 693 NLENVEEVFSVGLNRAVSVLADKQSKGGGRGRSTP 727
>gi|89071022|ref|ZP_01158239.1| DNA topoisomerase I [Oceanicola granulosus HTCC2516]
gi|89043410|gb|EAR49627.1| DNA topoisomerase I [Oceanicola granulosus HTCC2516]
Length = 870
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 337/797 (42%), Positives = 465/797 (58%), Gaps = 53/797 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV P+ DF M WEV + H+
Sbjct: 3 VVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPPKDGSVDPEHDFEMKWEVAGDSQKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
++I AL LILA+DPDREGEAI+WH+ E L ++ ++ ++ V+RV F+ IT+ ++
Sbjct: 63 RAIAEALKADNALILATDPDREGEAISWHLQEALTKRRSIKKDTAVSRVTFNAITKKAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+IDA LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L L+ +RE
Sbjct: 123 EAMANPRDIDAPLVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLVVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F+ QEYWTV+A+L ++ A LT K+L++ + T A+ Q
Sbjct: 183 MEIEAFRAQEYWTVKALLASPRGQ-----TYEARLTTLAGKKLDKFDLKDSTAAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S + +++ + R P++TSTLQQ+A+ K + A M AQ+LYE
Sbjct: 238 VTSRDLKIVSVEAKPAGRNPAPPFMTSTLQQEASRKFSMGARACMNAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R I ++G P + PR Y K KNAQEAHE IR
Sbjct: 291 --AGHITYMRTDGIDMAPEAVSAARDAIAAKFGKEFLP-DNPRIYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ + A GL D D +LY LI+ RT+A QM A + VDI +AD + R++
Sbjct: 348 PTDM-MMSADKLGLTDSDQRRLYDLIYKRTIASQMAAARFERTSVDIASADGQVGLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F GF A YE+ G +E++ + L L G+P EV +QH TQP
Sbjct: 407 QVVLFDGFLAVYEE---GRDDTSGDEDDGKR-----LPQLAEGEPAEKREVTPEQHFTQP 458
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVKK+EELGIGRPSTYAS L +QDR YV + L+PE +GR+V+ FL ++
Sbjct: 459 PPRYTEATLVKKMEELGIGRPSTYASVLSTIQDREYVRKEGNRLFPEDKGRIVTIFLLNF 518
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + Y FTA +E LD+VSAG ++K LL +W F L I +V +L+
Sbjct: 519 FRQYVGYEFTAKLEESLDDVSAGERDYKDLLASFWRDFHRAIEETSELRITEVLDVLDDA 578
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
L+ P +D R CP+C EG L K SR G F+GC+++P C Y + + G++
Sbjct: 579 LAPQLYP--PREDGTDPRECPLCKEGRLHLKTSRTGG--FVGCSRYPECRY-TRPIGGEE 633
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHIK 1066
ED R VD+ +++ L++G +G YVQ GE P RAS+
Sbjct: 634 QSED---RVLGVDD----------GDEISLRTGRFGPYVQRGEVTEDNKKPPRASLPKGW 680
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVP--KNMK-PN 1123
D++ LE AL LL P +G HP+DGQPI R G + H++ + P N+K P+
Sbjct: 681 APDAMDLEKALRLLSLPREVGLHPEDGQPIKANFGRFGPFLIHQKPDEAKPVYANLKDPD 740
Query: 1124 DV---TLEKALEFLSGK 1137
DV + +A+E L+ K
Sbjct: 741 DVFEIGMNRAVELLAEK 757
>gi|83950057|ref|ZP_00958790.1| DNA topoisomerase I [Roseovarius nubinhibens ISM]
gi|83837956|gb|EAP77252.1| DNA topoisomerase I [Roseovarius nubinhibens ISM]
Length = 868
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 341/792 (43%), Positives = 458/792 (57%), Gaps = 48/792 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV P+ DF M WEV + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPPKDGSVDPEADFDMKWEVGNDSKKHI 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L+++ + ++ V+RVVF+ IT+A++
Sbjct: 63 KAIADALKDDNALILATDPDREGEAISWHLEEALRKRKVIKKDTPVSRVVFNAITKAAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+Q REID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMQNPREIDTALVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F +EYW+V+A+L F A L K+L++ I + T+A+ Q
Sbjct: 183 MEIEAFNAREYWSVKALLGTPRGQ-----EFEARLVTLAGKKLDKYDIENATQAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
++S + V + R P++TSTLQQ+A+ K A TM AQ+LYE
Sbjct: 238 VSSRDLSVQSVEAKPASRNPSAPFMTSTLQQEASRKFGMGARQTMSAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R I +RYG+ + P PR Y K KNAQEAHE IR
Sbjct: 291 --AGHITYMRTDGIDMAPEAVTAARDAITDRYGAEYVP-GSPRIYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ R A L L D D KLY LIW RT+ACQM+ A + + V+IG+ D + R++
Sbjct: 348 PTDMTRDAAALK-LTDADQRKLYDLIWKRTLACQMESARLERTTVEIGSQDGQVGLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F GF YE+ G +++ R L + GD + +V +QH TQP
Sbjct: 407 QVVLFDGFLRVYEE---GRDDDVTEDDDKR------LPQIAQGDAMAKRDVTPEQHFTQP 457
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVK++EELGIGRPSTYAS + +Q+R YVT L PE +GR+V+ FL ++
Sbjct: 458 PPRYTEATLVKRMEELGIGRPSTYASIVTTIQEREYVTKDKNRLIPEDKGRIVTIFLLNF 517
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + Y FTAD+E ELD VSAG ++K +L +W FS L I +V +L+
Sbjct: 518 FRKYVGYEFTADLEEELDVVSAGNADYKQVLARFWRDFSVAIAETSELRITEVLDVLDAA 577
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
+L+ P +D R CP+CGEG L K SR G F+GC +P C Y
Sbjct: 578 LAPTLYP--PREDGSDPRICPLCGEGKLHLKTSRSGG--FVGCGNYPECRYTRPIGGEAG 633
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE--DRTGYLPKRASVSHI 1065
D D + N DE + L+SG +G YVQ GE + P RAS+
Sbjct: 634 DNGDRVLGEDNGDE-------------ISLRSGRFGPYVQRGEATEENNKKPPRASLPKG 680
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ L+ AL LL P +G HP+DG+ I + R G V+H RT A++ + V
Sbjct: 681 WQPAEMDLDKALLLLSLPREVGPHPEDGELIEAGIGRYGPFVKHGRTYANLESVDEVFTV 740
Query: 1126 TLEKALEFLSGK 1137
+ +A+E L+ K
Sbjct: 741 GMNRAVEVLAQK 752
>gi|126725957|ref|ZP_01741799.1| DNA topoisomerase I [Rhodobacterales bacterium HTCC2150]
gi|126705161|gb|EBA04252.1| DNA topoisomerase I [Rhodobacterales bacterium HTCC2150]
Length = 870
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 334/799 (41%), Positives = 472/799 (59%), Gaps = 49/799 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL A++GSV PD+ F M+WEV + H+
Sbjct: 3 VVVVESPAKAKTINKYLGKDYVVLASYGHVRDLPAKNGSVDPDNGFDMLWEVGYDSRKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L ++ A+ ++ V+RVVF+ IT+ ++
Sbjct: 63 KAIADALKDDNELILATDPDREGEAISWHLQEALTKRKAIKKSTPVSRVVFNAITKNAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+Q R +D LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI DRE
Sbjct: 123 EAMQNPRAVDMELVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVDRE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F +EYW+V+A L +F A LT K++++ + + A+ Q
Sbjct: 183 MEIEAFNAREYWSVKAALTTPRGQ-----NFEARLTMLAGKKVDKFDLENSVAAEMAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S + +V + R P++TSTLQQ+A+ K A TM AQ+LYE
Sbjct: 238 VTSRDLKVASVEAKPASRNPSAPFMTSTLQQEASRKFGMGARQTMSTAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA + R+ I RYG+ + P + PR Y K KNAQEAHE IR
Sbjct: 291 --AGYITYMRTDGIDMAPEAITDARAAISSRYGAEYVP-KSPRIYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT++ + L+ L D D KLY LIW RT+A QM+ A + + VDIG+ D+ ++ R++
Sbjct: 348 PTELSKSANDLN-LTDADQRKLYDLIWKRTLASQMEGARLERTTVDIGSEDKQVMLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F GF YE+ G ++++ R L + +P+ V +QH TQP
Sbjct: 407 QVVMFDGFMKVYEE---GRDDDVVDDDDKR------LPQIMQDEPMDKRSVTPEQHFTQP 457
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVK++EELGIGRPSTYAS + +Q+R YV L+PE +GR+V+ FL +Y
Sbjct: 458 PPRYTEATLVKRMEELGIGRPSTYASIVTTIQEREYVRKDKNRLFPEDKGRIVTVFLLNY 517
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + + FTAD+E++LDNVSAG ++K +L +W FS+ L I V L+
Sbjct: 518 FRKYVGFDFTADLESQLDNVSAGDADYKVVLEQFWHDFSAAIAETSELRISDVLTKLDAA 577
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD- 1006
L+ P +D ++CP+CGEG L K SR G F+GC +P C Y + + GD
Sbjct: 578 LAPQLYP--PREDGADPKTCPLCGEGKLHLKSSRSGG--FVGCGNYPECRY-TRPIGGDA 632
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHI 1065
D D +++G + +++ L++G +G Y+Q G+ P RAS+
Sbjct: 633 ADGGD-----------RVLGED--AGDEISLRTGRFGPYIQRGQVTEEVKKPLRASLPKG 679
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
D++ LE AL LL P +G HP+D +P+ L R G V+H RT AS+ + V
Sbjct: 680 WAPDNMDLEKALMLLSLPRLIGPHPEDQEPVEAGLGRYGPYVKHGRTFASLSDAEELFTV 739
Query: 1126 TLEKALEFLSGKDVRRCGR 1144
+ +A+E ++ K + GR
Sbjct: 740 GMNRAVELIAEKIAKGPGR 758
>gi|148285004|ref|YP_001249094.1| DNA topoisomerase I [Orientia tsutsugamushi str. Boryong]
gi|146740443|emb|CAM80939.1| DNA topoisomerase I [Orientia tsutsugamushi str. Boryong]
Length = 788
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 308/791 (38%), Positives = 481/791 (60%), Gaps = 37/791 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+++VES KAK I YLG ++V+ SYGHVRDL A++GSV P+ DF + +E+ + H+
Sbjct: 3 LLIVESPAKAKTINKYLGSDFQVVASYGHVRDLLAKAGSVLPEQDFLIKYEINPKSTRHI 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I +E + LA+DPDREGE+I+WHIVE+L+++ R++F+EIT+ +I
Sbjct: 63 KTICDLAKKSECIYLATDPDREGESISWHIVEVLKEKKIFA---NFKRIIFNEITKKAIG 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
ALQ R+I+ NLV A ARR+LDYL+GF++SPLLWRKLPGC+SAGRVQS L LIC+RE
Sbjct: 120 DALQQPRDINLNLVNAQQARRSLDYLVGFSLSPLLWRKLPGCKSAGRVQSVGLRLICERE 179
Query: 532 MEIDEFKPQEYWTV--EAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
EI +F QEYW + + + +K E + A L F +L + SI + ++A+DI
Sbjct: 180 EEISKFISQEYWNIHIDMISNKDEIVT-------AKLIEFDGNKLEKFSITNQSQAQDIV 232
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ I + F+VI +++ + P P+ITS+LQQ+AA KL F+A TM +AQKLYEG+ L
Sbjct: 233 KNIENQQFKVIDITRKQRKKSPPPPFITSSLQQEAAGKLGFTAKKTMTIAQKLYEGIDLN 292
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
+ + A LITYMRTD + +S + E R+ I +G+++ P + R + KVKNAQEAHEA
Sbjct: 293 NESTA-LITYMRTDSVMLSKDFIDETRNFISSSFGNNYLPRQ-IRAFKSKVKNAQEAHEA 350
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRP +I P +L +++D LKLY LIW RT+ACQM+ + ++ + ++ V ++
Sbjct: 351 IRPININLTPELLLNKIEKDYLKLYELIWQRTVACQMENVILNLESINFASFNQLHVAKA 410
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S + F GF Y+++ ND E +L +L + + + + KQH T
Sbjct: 411 TGSTIAFDGFYKVYKEI------------NDEEENKKLLPNLSQNEVMQVKNILPKQHFT 458
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PP RYSE +LVK LE+LGIGRPSTYA+ + VLQ+R+YV + + P+ +GR+V+AFL+
Sbjct: 459 EPPPRYSEATLVKTLEDLGIGRPSTYATIISVLQERDYVILDQKRFIPQNKGRLVTAFLT 518
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F + +Y FTA +E +LD+++ G+ W+ +L ++W+ F++ + I + +E
Sbjct: 519 AFFKKYVEYDFTAKLEDQLDSIAKGMIGWQEILKNFWTGFNNNVQEIEQYKITDIIPQIE 578
Query: 950 KTFGDSLF--ASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
+ LF + + C +C G L K+S++GA F+ CN +P CN+ + +
Sbjct: 579 TLLSNFLFPVQNGETDHKLCTLCKVGKLSLKLSKYGA--FLACNNYPSCNF-TRNIAAAF 635
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGY--LPKRASVSHI 1065
+ D L + N K IG+ ++ + LK GP+G+Y+Q GED T PKR +S I
Sbjct: 636 ENNDNLPKGKN---NKAIGYSDDMQKTIYLKEGPFGWYIQAGEDSTNKNDKPKRVPISVI 692
Query: 1066 KDV-DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
ITLE A++LL P +G +P + I + + R G ++H S+PKN +
Sbjct: 693 SSSPQDITLETAVKLLALPKVIGLNPNTNKEITVAVGRYGPYLKHDGKFISIPKNYDYLN 752
Query: 1125 VTLEKALEFLS 1135
+++ ++ ++
Sbjct: 753 LSINDCIKIIT 763
>gi|56697911|ref|YP_168282.1| DNA topoisomerase I [Ruegeria pomeroyi DSS-3]
gi|56679648|gb|AAV96314.1| DNA topoisomerase I [Ruegeria pomeroyi DSS-3]
Length = 880
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 353/841 (41%), Positives = 480/841 (57%), Gaps = 78/841 (9%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL A+ GSV P+ DF M WEV + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPAKDGSVDPEHDFDMTWEVAADSRKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL+ LILA+DPDREGEAI+WH+ E L ++ ++ + V+RV F+ IT+ ++
Sbjct: 63 KAIADALAEDNELILATDPDREGEAISWHLQEALTKRRSIKKGTAVSRVTFNAITKDAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+Q R++D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 KAMQNPRQVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ FKP EYW+V+A+L+ + A L +L+++ I + T+A+ Q
Sbjct: 183 MEIEAFKPVEYWSVKALLETPRGQ-----VYEARLVTLAGNKLDKMDISNATQAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I S + + R P++TSTLQQ+A+ K A + M AQ+LYE
Sbjct: 238 ITSRALSIQSVEAKPAARNPSAPFMTSTLQQEASRKFGMGARHCMSAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R I +R+G+ + P + PR Y K KNAQEAHE IR
Sbjct: 291 --AGHITYMRTDGIDMAPEAVMATRDAIADRFGAEYVP-DSPRMYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+R+ A L L DED +LY LIW RT+ACQM A + + V+IG+AD + R++
Sbjct: 348 PTDMRKDAAALK-LKDEDQRRLYDLIWKRTIACQMAAARLERTTVEIGSADGQVGLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDR-------HEAFAILNSL------KTGD-PL 817
V F GF YE+ EN+E+ R +A SL TGD PL
Sbjct: 407 QVVLFDGFLRVYEEGRDDV----ENDEDKRLPQISMGEKAVFAKTSLADQFARATGDTPL 462
Query: 818 YLG-------------EVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQD 864
G V QHHTQPP RY+E +LVK++EELGIGRPSTYAS + +QD
Sbjct: 463 TEGAKIAKEAILSENEAVLALQHHTQPPPRYTEATLVKRMEELGIGRPSTYASVITTIQD 522
Query: 865 RNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVD 924
R YV L PE +GR+V+ FL ++F + Y FTA++E +LD+VSAG ++K LL
Sbjct: 523 REYVRKDKNRLIPEEKGRIVTIFLLNFFRQYVGYEFTANLEEQLDDVSAGSRDYKDLLGR 582
Query: 925 YWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVS 980
+W FS+ + L I +V L++ L+ P +D R CP CG G L K S
Sbjct: 583 FWRDFSAAISETSELRISEVLDKLDEALAPQLYP--PREDGSDPRICPKCGTGQLHLKTS 640
Query: 981 RFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSG 1040
R G F+GC +P C Y + + GD D D+ +R L+G +++ LK+G
Sbjct: 641 RTGG--FVGCGNYPECRY-TRPISGDAD--DSAER--------LLGED--GGDEIWLKAG 685
Query: 1041 PYGFYVQLGE-DRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLR 1099
+G YVQ GE P RAS+ + + LE AL LL P +G HP+ G I
Sbjct: 686 RFGPYVQRGEISEENKKPPRASLPRGWSAEDLDLEKALVLLSLPRQIGQHPEGGM-ISSN 744
Query: 1100 LARAGFSVRHRRTIASVP--KNMK-PNDV---TLEKALEFLSGK--DVRRCGRPKGKPKR 1151
R G + H+ + P N+K P+DV + +A+E L+ K + R GR KP +
Sbjct: 745 FGRFGPYLMHQLPDEAKPIYANLKDPSDVFEIGMNRAVELLAEKRANPRGRGRAAAKPLK 804
Query: 1152 E 1152
E
Sbjct: 805 E 805
>gi|83954520|ref|ZP_00963231.1| DNA topoisomerase I [Sulfitobacter sp. NAS-14.1]
gi|83840804|gb|EAP79975.1| DNA topoisomerase I [Sulfitobacter sp. NAS-14.1]
Length = 888
Score = 584 bits (1505), Expect = e-163, Method: Compositional matrix adjust.
Identities = 336/814 (41%), Positives = 473/814 (58%), Gaps = 48/814 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV P++ F M WEV +A+ H+
Sbjct: 3 VVVVESPAKAKTINSYLGSDYTVLASYGHVRDLPPKDGSVDPENGFDMTWEVAAASKKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L ++ ++ ++ V+RVVF++IT+ ++
Sbjct: 63 KAIADALKDDNALILATDPDREGEAISWHLQEALTKRKSIKKDTPVSRVVFNQITKKAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMANPRQVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVTLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F+ +EYW+V+A++ F A L K+L++ +G+ T+A+ Q
Sbjct: 183 MEIEAFRNREYWSVKALVATPRGQ-----EFEARLVTLAGKKLDRFDLGNETQAEMAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I S + V + R P++TSTLQQ+A+ K A TM AQ+LYE
Sbjct: 238 ITSRDLTVTSVEAKPASRNPSAPFMTSTLQQEASRKFGMGARQTMSTAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R I +R+G+ + P E PR Y K KNAQEAHE +R
Sbjct: 291 --AGHITYMRTDGIDMAPEAITMARDAISDRFGAEYVPSE-PRIYKNKAKNAQEAHECVR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ + L L + D KLY LIW RT+ACQM+ A + + V+IG+ DE + R++
Sbjct: 348 PTDMTKDAGALK-LTEPDQRKLYDLIWKRTLACQMESARLERTTVEIGSKDEQVGLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V+F GF YE+ + +E+D+ L + GD + V +QH TQP
Sbjct: 407 QVVKFDGFLRVYEEGRDDVV-----DEDDKR-----LPQITQGDKMDKRAVTPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVK++EELGIGRPSTYAS + +QDR YV + L+PE +GR+V+AFL +Y
Sbjct: 457 PPRYTEATLVKRMEELGIGRPSTYASVVTTIQDREYVRKEGNRLFPEDKGRLVTAFLENY 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + Y FTAD+E +LD VSA ++K +L +W FS+ L I +V + + +
Sbjct: 517 FRKYVGYDFTADLENQLDKVSAADADYKDVLGRFWQDFSAAIAETADLRITEVLEKINEV 576
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
LF PN+D R CP C G L + +R G G FIGC+ +P C Y +G
Sbjct: 577 LEPHLFP--PNEDGSDPRLCPNCEIGRLSMRTARSG-GAFIGCSNYPECRYTRP--FGPP 631
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHIK 1066
D E + + + KL+G + +V G +G YVQ G P R SV
Sbjct: 632 DPE--AEASAIPPDGKLLGEDMGDEIRVF--KGRFGPYVQRGPVTEENKKPPRQSVPKDW 687
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIAS---VPKNMKPN 1123
+ + LE A+ LL P +G HP+DG + + R G ++H + ++ N++
Sbjct: 688 PAEELELERAVMLLSLPREIGPHPEDGVMVWANIGRYGPYIKHADSTSNRGGTNANLETL 747
Query: 1124 D----VTLEKALEFLSGKDVRRCGRPK-GKPKRE 1152
D V + +A++ L+ K R GR K KP RE
Sbjct: 748 DEVFTVGMNRAVQLLAEKVASRGGRGKAAKPIRE 781
>gi|332185606|ref|ZP_08387354.1| DNA topoisomerase I [Sphingomonas sp. S17]
gi|332014584|gb|EGI56641.1| DNA topoisomerase I [Sphingomonas sp. S17]
Length = 855
Score = 583 bits (1504), Expect = e-163, Method: Compositional matrix adjust.
Identities = 329/761 (43%), Positives = 449/761 (59%), Gaps = 52/761 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y VL SYGHVRDL + GSV PD +FSM WE + L
Sbjct: 3 LVIVESPAKAKTIEKYLGSDYRVLASYGHVRDLPPKDGSVDPDQNFSMEWENYADKARQL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I A+ LILA+DPDREGEAI+WH+ E+L+ + AL + V RV F+ IT+ +I
Sbjct: 63 KAIADEAKKADRLILATDPDREGEAISWHVQEVLKNRKALPDK--VERVTFNAITKPAIL 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+Q RE+D +L+ AY ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LI RE
Sbjct: 121 HAMQNPRELDTDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLIVGRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+PQEYW+V A +++ D F A L ++ K+L++LSIG+ +A +
Sbjct: 181 REIEAFRPQEYWSVTADMEQ------DGTPFVARLVQWEGKKLDRLSIGNEGDATRAKAD 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ ++ FQV + R P P+ TSTLQQ+AA KL FSA +TM++AQ+LYE
Sbjct: 235 VEASRFQVQSVETKPATRNPPPPFTTSTLQQEAARKLGFSADHTMRIAQQLYED------ 288
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G ITYMRTDG+ + A R + +RY + + P++ PR Y K KNAQEAHEAIR
Sbjct: 289 ---GAITYMRTDGVQMDGSAISAARKAVADRYDASYVPDK-PRVYQSKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD R A SG D +LY LIW R +A QM A + + +D+ + V R++
Sbjct: 345 PTDFSRDHAG-SG----DHGRLYDLIWKRALASQMASARMERTTIDMADGTGRHVLRATG 399
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F G+ A YE E +++ + E L L+ GD EV+ +QH TQP
Sbjct: 400 QVVLFPGYLALYE----------EGQDDSQDEEARRLPRLREGDAPAKKEVKAEQHFTQP 449
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P R+SE SLVK++EELGIGRPSTYAS +K L+DR YV V+ + E GR+V+AFL +
Sbjct: 450 PPRFSEASLVKRMEELGIGRPSTYASIIKTLKDRAYVRVEKNRFFAEESGRLVTAFLERF 509
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + Y +TA++E ELD+VS G +W+ +L +W F + + L++
Sbjct: 510 FEKYVGYDYTAELEEELDDVSGGRAQWQAVLDAFWRDFKPRTSEVMEQQPSAITAELDQF 569
Query: 952 FGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDE 1009
LF + R CP CGEG L + RFGA FI C+ +P C Y + G +
Sbjct: 570 LAPYLFPEKADGSDPRLCPNCGEGKLALRGGRFGA--FIACSNYPECKYTRRFAQGGEGA 627
Query: 1010 -EDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDV 1068
ED+ P+ +G P + V KSG +G Y+QLGE + KRAS+ KD+
Sbjct: 628 GEDS--------GPETLGQDPETGLPVERKSGRFGPYIQLGEGKDA---KRASIP--KDI 674
Query: 1069 DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
D + LE AL+LL P +GNHP+ G+PI + R G + H
Sbjct: 675 D-LDLEWALKLLHLPRTIGNHPETGEPITASIGRYGPYLAH 714
>gi|99082179|ref|YP_614333.1| DNA topoisomerase I [Ruegeria sp. TM1040]
gi|99038459|gb|ABF65071.1| DNA topoisomerase I [Ruegeria sp. TM1040]
Length = 893
Score = 583 bits (1504), Expect = e-163, Method: Compositional matrix adjust.
Identities = 345/811 (42%), Positives = 467/811 (57%), Gaps = 72/811 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL A++GSV P+DDF+M WEV + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPAKNGSVDPEDDFAMTWEVGNDSKKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
++I AL LILA+DPDREGEAI+WH+ E L ++ ++ ++ V RV F+ IT+ ++
Sbjct: 63 RAIAEALKDDNALILATDPDREGEAISWHLQEALTKRRSIKKDTDVKRVTFNAITKDAVA 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMKNPRDVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F PQEYW+V A L SF A LT ++L++ S+ + T A+ Q
Sbjct: 183 MEIEAFNPQEYWSVRANLATPRGQ-----SFEARLTVLGGEKLDKFSLANSTAAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
++S V+ + R P++TSTLQQ+A+ K A M AQ+LYE
Sbjct: 238 VSSRKMSVLSVEAKPAARNPSAPFMTSTLQQEASRKFGMGAKQCMNAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AGLITYMRTDG+ ++ EA R I +RYG + P E PR Y K KNAQEAHE IR
Sbjct: 291 --AGLITYMRTDGIDMAPEAVSAARDEIAKRYGQEYVPGE-PRIYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ R A L + ++D KLY LIW RT+ACQM A + + VDIG+ D+ +V R++
Sbjct: 348 PTDMSRDAASLK-VSEDDQRKLYDLIWKRTLACQMAGARLERTTVDIGSDDKQVVLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRH-------EAFAILNSL--------KTGDP 816
V F GF YE+ + +E+D+ EA SL K G
Sbjct: 407 QVVMFDGFMRVYEEGRDDVV-----DEDDKRLPQIMQGEALKFAGSLAAQAEKAGKDGSV 461
Query: 817 LYLGEVELK-QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRIL 875
L L QHHTQPP RY+E +LVK++EELGIGRPSTYAS + +QDR YV L
Sbjct: 462 LSQDGATLALQHHTQPPPRYTEATLVKRMEELGIGRPSTYASVITTIQDREYVRKDKNRL 521
Query: 876 YPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTC 935
+PE +GR+V+ FL ++F +Y FTA +E +LD+VSAG ++K LL +W FS+ +
Sbjct: 522 FPEDKGRIVTIFLLNFFKRYVEYDFTAALENQLDDVSAGGKDYKELLDSFWRDFSAAISE 581
Query: 936 AQSLHIHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCN 991
L I +V +L++ L+ P +D R CP CG G L K SR G F+GC
Sbjct: 582 TSDLRISEVLDVLDEALAPQLYP--PREDGGDPRICPKCGAGQLHLKTSRTGG--FVGCG 637
Query: 992 QHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGED 1051
+P CNY + + G+ E +R D+ +++ LKSG +G YVQ GE
Sbjct: 638 NYPECNY-TRPISGEGAE--GYERVLGEDD----------GDEIHLKSGRFGPYVQRGEA 684
Query: 1052 R-TGYLPKRASV-SHIKDV------DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARA 1103
P R+S+ KD + ITLE A+ LL P +G HP+ G + L R
Sbjct: 685 TPENKKPPRSSLPKQGKDYLPGWGPNEITLEQAVTLLTLPREIGAHPEGGV-VSSNLGRF 743
Query: 1104 GFSVRHRRTIASVPKNMKPNDVTLEKALEFL 1134
G + H+R P KP V L++ L+
Sbjct: 744 GPYIMHQR-----PDEEKPVYVNLKETLDVF 769
>gi|306839014|ref|ZP_07471835.1| DNA topoisomerase I [Brucella sp. NF 2653]
gi|306405920|gb|EFM62178.1| DNA topoisomerase I [Brucella sp. NF 2653]
Length = 828
Score = 583 bits (1504), Expect = e-163, Method: Compositional matrix adjust.
Identities = 325/755 (43%), Positives = 450/755 (59%), Gaps = 32/755 (4%)
Query: 399 MVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVA 458
M WEV S + L I AL ++ LILA+DPDREGEAI+WH++E+L+Q+ AL+ TV
Sbjct: 1 MSWEVDSNSAKRLSDIVKALKDSDGLILATDPDREGEAISWHVLEVLRQKKALNGK-TVK 59
Query: 459 RVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGR 518
RV F+ IT+ ++ A+ R+ID LV AYLARRALDYL+GF +SP+LWRKLPG +SAGR
Sbjct: 60 RVAFNAITKKAVLDAIAHPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGR 119
Query: 519 VQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLS 578
VQS AL L+CDRE EI+ F +EYW + A+L + S F A LT K+L +L
Sbjct: 120 VQSVALRLVCDREAEIERFVREEYWNIAALLKTPRNDS-----FTARLTALDGKKLGKLD 174
Query: 579 IGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKL 638
I + +A I + ANF+ + + R P+ TSTLQQ A+ +L FSA+ TM++
Sbjct: 175 IKNGEQAGAIRTMLEGANFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQV 234
Query: 639 AQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFK 698
AQ+LYEGV + G AGLITYMRTDG+ I+ EA R I + +G+ + PE+ PR Y
Sbjct: 235 AQRLYEGVDI-GGETAGLITYMRTDGVQIAPEAINAARDAIAKSFGAKYVPEK-PRYYSS 292
Query: 699 KVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI 758
K KNAQEAHEAIRPTD R P + LDED +LY LIW R +A QMQ A + + VDI
Sbjct: 293 KAKNAQEAHEAIRPTDFSRHPKDVRRFLDEDQARLYELIWKRAIASQMQAADIERTTVDI 352
Query: 759 --GNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDP 816
N + + R++ S +F GF AAY D EE D E A L +++G+
Sbjct: 353 EATNGSRAAMLRANGSVTKFDGFLAAYMD---------HREEEDDDEDSAKLPEIRSGEA 403
Query: 817 LYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILY 876
L +++ QH T+PP RYSE +L+KK+EELGIGRPSTYA+TL L+DR Y+T+ R L
Sbjct: 404 LAREKIDATQHSTEPPPRYSEATLIKKMEELGIGRPSTYAATLATLRDREYITIDKRKLI 463
Query: 877 PEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCA 936
PE +GR+V+AFL +F +Y FTAD+E +LD +S G WK +L D+W FS
Sbjct: 464 PEAKGRLVTAFLESFFERYVEYDFTADLEEKLDLISDGKLSWKEVLRDFWRAFSGSVEDI 523
Query: 937 QSLHIHQVEKMLEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHP 994
+ L + V L + +F + + RSCP CG G L K+ R+GA F+GC+ +P
Sbjct: 524 KELRVTNVLDALNEELAPLVFPAREDGSDPRSCPTCGTGVLSLKLGRYGA--FVGCSNYP 581
Query: 995 RCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTG 1054
C Y + L G+ + E DEPK +G P + E++ ++G +G Y+Q GE G
Sbjct: 582 ECKYT-RQLGGEANGE-----TAASDEPKPLGKDPFTGEEITARTGRFGPYIQRGE---G 632
Query: 1055 YLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIA 1114
KRAS+ +D++ E A+ LL P ++G HP+ G+ I + R G V H T A
Sbjct: 633 KEAKRASLPKGWTLDTVDHEKAIALLSLPRDIGLHPETGKMISAGIGRYGPYVSHDGTFA 692
Query: 1115 SVPKNMKPNDVTLEKALEFLSGKDVRRCGRPKGKP 1149
++ + V L +A+ L+ K + GR + P
Sbjct: 693 NLENVEEVFSVGLNRAVSVLADKQSKGGGRGRSTP 727
>gi|294678616|ref|YP_003579231.1| DNA topoisomerase I [Rhodobacter capsulatus SB 1003]
gi|294477436|gb|ADE86824.1| DNA topoisomerase I [Rhodobacter capsulatus SB 1003]
Length = 879
Score = 583 bits (1503), Expect = e-163, Method: Compositional matrix adjust.
Identities = 337/791 (42%), Positives = 459/791 (58%), Gaps = 45/791 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y VL S+GHVRDL + GSV PD DF M WEV + + H
Sbjct: 2 AVVVVESPAKAKTINKYLGSDYTVLASFGHVRDLPPKDGSVDPDADFEMKWEVAADSKKH 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K+I AL+ + LILA+DPDREGEAI+WH + Q + + V+RV F+ IT+++I
Sbjct: 62 IKAITDALANDDELILATDPDREGEAISWH---LQQALASKLKKKKVSRVTFNAITKSAI 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A++A RE+D LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +R
Sbjct: 119 TEAMKAPREVDQALVDAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVCLRLIVER 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
EMEI+ F+ +EYWTV A L + F A LT K+L++ + + T+A+ Q
Sbjct: 179 EMEIEAFRAREYWTVTAELTTPRGQT-----FTARLTVLGGKKLDKFDLTTATDAELAVQ 233
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S + V + R P++TSTLQQ+A+ K A M AQ+LYE
Sbjct: 234 AVTSRDLTVKSVEAKPATRNPYPPFMTSTLQQEASRKFGMGAKACMSAAQRLYE------ 287
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
AG ITYMRTDG+ ++ EA R I R+G + P PR Y K KNAQEAHE I
Sbjct: 288 ---AGHITYMRTDGIDMAPEAVMAARDEIKRRFGDKYVPS-SPRMYKNKAKNAQEAHECI 343
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ + P L L +D KLY LIW RT+A QM A + + VD+G+ D + R++
Sbjct: 344 RPTDMSQSPDKLK--LADDQWKLYDLIWKRTLASQMSAAVMERTTVDVGSKDNEVELRAT 401
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
V F GF Y+ + ++D E A L + G+P G + +QH TQ
Sbjct: 402 GQVVTFDGFLKIYD----------QGRDDDEGEDGARLPQIMQGEPAQKGAITPEQHFTQ 451
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E +LVK++EELGIGRPSTYAS L + DR YV L PE GR+V+AFLS+
Sbjct: 452 PPPRYTEATLVKRMEELGIGRPSTYASILTTIVDRGYVRKDKNRLIPEDTGRLVTAFLSN 511
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF +Y FTAD+ETELD++SAG ++ +L +W FS+ L I +V +++
Sbjct: 512 YFRRYVEYDFTADLETELDDISAGDRPYRDVLARFWRDFSAALAETADLRIGEVLSKIDE 571
Query: 951 TFGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
G L+ + + RSCPVC G L K +R G G FIGC +P C Y D
Sbjct: 572 VLGPHLYPARADGSDPRSCPVCSAGRLHLKTARSG-GAFIGCGNYPDCRYTRPLSAPADG 630
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPK--RASVSHIK 1066
E L + K++G + ++ L+ G +G YVQ GE + +PK RAS+
Sbjct: 631 EAGVL-------DGKVLGEDEGA--QITLRVGRFGPYVQKGE-ASEEIPKPPRASLPKGW 680
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+SI LE AL+LL P +GNHP+DG + + R G V+H T A++P + +
Sbjct: 681 SPESIDLERALQLLNLPRPIGNHPEDGALVEAGIGRFGPYVKHNSTYANLPDVEEVFTIG 740
Query: 1127 LEKALEFLSGK 1137
+ +A+E L+ K
Sbjct: 741 MNRAVEVLAQK 751
>gi|83943947|ref|ZP_00956404.1| DNA topoisomerase I [Sulfitobacter sp. EE-36]
gi|83845194|gb|EAP83074.1| DNA topoisomerase I [Sulfitobacter sp. EE-36]
Length = 888
Score = 583 bits (1503), Expect = e-163, Method: Compositional matrix adjust.
Identities = 336/814 (41%), Positives = 473/814 (58%), Gaps = 48/814 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV P++ F M WEV +A+ H+
Sbjct: 3 VVVVESPAKAKTINSYLGSDYTVLASYGHVRDLPPKDGSVDPENGFDMTWEVAAASKKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L ++ ++ ++ V+RVVF++IT+ ++
Sbjct: 63 KAIADALKDDNALILATDPDREGEAISWHLQEALTKRKSIKKDTPVSRVVFNQITKKAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMANPRQVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVTLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F+ +EYW+V+A++ F A L K+L++ +G+ T+A+ Q
Sbjct: 183 MEIEAFRNREYWSVKALVATPRGQ-----EFEARLVTLAGKKLDRFDLGNETQAEMAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I S + V + R P++TSTLQQ+A+ K A TM AQ+LYE
Sbjct: 238 ITSRDLTVTSVEAKPASRNPSAPFMTSTLQQEASRKFGMGARQTMSTAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R I +R+G+ + P E PR Y K KNAQEAHE +R
Sbjct: 291 --AGHITYMRTDGIDMAPEAITMARDAISDRFGAEYVPSE-PRIYKNKAKNAQEAHECVR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ + L L + D KLY LIW RT+ACQM+ A + + V+IG+ DE + R++
Sbjct: 348 PTDMTKDADALK-LTEPDQRKLYDLIWKRTLACQMESARLERTTVEIGSKDEQVGLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V+F GF YE+ + +E+D+ L + GD + V +QH TQP
Sbjct: 407 QVVKFDGFLRVYEEGRDDVV-----DEDDKR-----LPQITQGDKMDKRSVTPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVK++EELGIGRPSTYAS + +QDR YV + L+PE +GR+V+AFL +Y
Sbjct: 457 PPRYTEATLVKRMEELGIGRPSTYASVVTTIQDREYVRKEGNRLFPEDKGRLVTAFLENY 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + Y FTAD+E +LD VSA ++K +L +W FS+ L I +V + + +
Sbjct: 517 FRKYVGYDFTADLENQLDKVSAADADYKDVLGRFWQDFSAAIAETADLRITEVLEKINEV 576
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
LF PN+D R CP C G L + +R G G FIGC+ +P C Y +G
Sbjct: 577 LEPHLFP--PNEDGSDPRLCPNCEIGRLSMRTARSG-GAFIGCSNYPECRYTRP--FGPP 631
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHIK 1066
D E + + + KL+G + +V G +G YVQ G P R SV
Sbjct: 632 DPE--AEASAIPPDGKLLGEDMGDEIRVF--KGRFGPYVQRGPVTEENKKPPRQSVPKDW 687
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIAS---VPKNMKPN 1123
+ + LE A+ LL P +G HP+DG + + R G ++H + ++ N++
Sbjct: 688 PAEELELERAVMLLSLPREIGPHPEDGVMVWANIGRYGPYIKHADSTSNRGGTNANLETL 747
Query: 1124 D----VTLEKALEFLSGKDVRRCGRPK-GKPKRE 1152
D V + +A++ L+ K R GR K KP RE
Sbjct: 748 DEVFTVGMNRAVQLLAEKVASRGGRGKAAKPIRE 781
>gi|407785537|ref|ZP_11132685.1| DNA topoisomerase I subunit omega [Celeribacter baekdonensis B30]
gi|407203569|gb|EKE73556.1| DNA topoisomerase I subunit omega [Celeribacter baekdonensis B30]
Length = 885
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 346/820 (42%), Positives = 465/820 (56%), Gaps = 81/820 (9%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL A+ GSV D+DF M WE+ + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGSNYTVLASYGHVRDLPAKDGSVDTDNDFDMTWEIGADSRKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL + LILA+DPDREGEAI+WH+ E L ++ A+ ++ V+RV F+ IT+A+I
Sbjct: 63 KAIADALKNDDELILATDPDREGEAISWHLQEALTKRKAIKKSTAVSRVTFNAITKAAIL 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMKHPRQVDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
+EI+ F PQEYWTV+A+L+ SF A LT K+L++ + A+ Q
Sbjct: 183 IEIEAFNPQEYWTVKALLETPRGQ-----SFEARLTQLSGKKLDKFDLKDRLTAEMAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
++S +V + R P++TSTLQQ+A+ K A M AQ+LYE
Sbjct: 238 VSSRALKVASVEAKPGSRNPSAPFMTSTLQQEASRKFGMGARQAMNAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AGLITYMRTDG+ ++ EA + R I RYG + P PR Y K KNAQEAHE IR
Sbjct: 291 --AGLITYMRTDGIDMAPEAVTQARDAIKARYGDRYVP-ANPRIYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ P + L D D KLY LIW RT+A QM+ A + + VDI + D +V R++
Sbjct: 348 PTDMFVSPDE-AKLTDADQRKLYDLIWKRTIASQMEAARLERTTVDITSDDHEVVLRATG 406
Query: 772 SRVEFLGFQAAY----EDVD-------------------AGAIRYKENEENDRHEAFAIL 808
+ F GF A Y +DVD AG ++ + E+ AIL
Sbjct: 407 QVIVFDGFMAVYTEGRDDVDEDDEGRLPQIMDGEALKRVAGGLKAQAAEKE------AIL 460
Query: 809 NSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYV 868
GD LG QHHT PP RY+E +LVK++EELGIGRPSTYAS L + DR YV
Sbjct: 461 ----AGDDAILG----LQHHTNPPPRYTEATLVKRMEELGIGRPSTYASVLTTIVDREYV 512
Query: 869 TVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSR 928
+ L PE +GR+V+ FL ++F + Y FTA++E ELD +SAG ++K +L +W
Sbjct: 513 RKEQNRLIPEDKGRIVTIFLMNFFRKYVGYEFTANLEEELDEISAGDLDYKEVLAKFWRD 572
Query: 929 FSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGA 984
FS+ L I +V L+ L+ P D R CP+CG+G+L K SR G
Sbjct: 573 FSAAIGETSELRISEVLDKLDAALAPQLYP--PRADGSDPRVCPLCGQGSLHLKTSRSGG 630
Query: 985 GYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGF 1044
F+GC+ +P C Y + + GD E +++G E + L+SG YG
Sbjct: 631 --FVGCSNYPECRY-TRPISGDAAEAGD----------RILGEDEDGNE-ISLRSGRYGP 676
Query: 1045 YVQLGE-DRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARA 1103
YVQ GE PKRAS+ D +++ LE AL LL P +G HP+ G I R
Sbjct: 677 YVQRGEVSEENKKPKRASLPKGWDAEAMDLEKALTLLSLPRRIGEHPEGGV-ISANFGRF 735
Query: 1104 GFSVRHRRTIASVP--KNMK-PNDV---TLEKALEFLSGK 1137
G + H+ P N+K PNDV + +A+E ++ K
Sbjct: 736 GPYLMHKLPGDEKPVYANLKDPNDVFECGMNRAVELITDK 775
>gi|372280138|ref|ZP_09516174.1| DNA topoisomerase I subunit omega [Oceanicola sp. S124]
Length = 885
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 339/812 (41%), Positives = 470/812 (57%), Gaps = 46/812 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV P+ DF M+WE+ S + H+
Sbjct: 3 VVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPPKDGSVDPERDFEMLWEIASDSKKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L+ + AL ++ V+RVVF+ IT+ ++
Sbjct: 63 KAIADALKDDNALILATDPDREGEAISWHLEEALRNRKALKKDTPVSRVVFNAITKTAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D +LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMKNPRQVDGDLVHAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F+P+EYW+V+A+L + A LT +L++ SI + T+A+ Q
Sbjct: 183 MEIEAFRPREYWSVKAILTTPRGQ-----EYEARLTVLAGDKLDKYSIENATQAEMAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I S + V + R P++TSTLQQ+A+ K A TM AQ+LYE
Sbjct: 238 ITSRDLTVTSVEAKPASRNPSPPFMTSTLQQEASRKFGMGARQTMNAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R I +R+G + P PR Y K KNAQEAHE IR
Sbjct: 291 --AGHITYMRTDGIDMAPEAVTACREAIADRFGKDYVP-SSPRVYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ + A L L +D KLY LIW RT+ACQM+ A + + V+IG+ D + R++
Sbjct: 348 PTDMTKDAAALG--LSDDQRKLYDLIWKRTLACQMEGARMERTTVEIGSRDGQVGLRATG 405
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F GF YE+ + +N L + G+ ++ QH TQP
Sbjct: 406 QVVLFDGFLKIYEEGRDDVVDDDDNR----------LPQISQGEKAEKKKITPDQHFTQP 455
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVK++EELGIGRPSTYAS + +QDR YV L PE +GR+V AFLS+Y
Sbjct: 456 PPRYTEATLVKRMEELGIGRPSTYASIVTTIQDRGYVVKDKNRLIPEDKGRLVIAFLSNY 515
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTAD+E ELD+VSAG ++K +L +W FS+ L I +V + +
Sbjct: 516 FKKYVEYDFTADLEEELDDVSAGDRDYKDVLGRFWRDFSAAIAETSELRITEVLDKINEV 575
Query: 952 FGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDE 1009
LF LP+ R CP CG G L + +R G G FIGC+ +P C Y +G +
Sbjct: 576 LEPHLFPPLPDGGDPRLCPNCGAGRLSMRTARSG-GAFIGCSNYPECRYTRP--FGPPNP 632
Query: 1010 EDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPK--RASVSHIKD 1067
E + + E KL+G + +++ + G +G YVQ GE T PK R SV
Sbjct: 633 E--AEASAIPPEGKLLGKD--AGDEIRIFKGRFGPYVQRGE-ATAEQPKPPRQSVPKEWT 687
Query: 1068 VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIAS---VPKNMKPND 1124
+ + L+ A++LL P LG HP+DG + + R G ++H + + N++ D
Sbjct: 688 PEDLELDQAVKLLELPRLLGPHPEDGVNVWANIGRYGPYLKHAESTSDRGGTNANLEGLD 747
Query: 1125 ----VTLEKALEFLSGKDVRRCGRPKGKPKRE 1152
V + +A++ L+ K R GR K +E
Sbjct: 748 EVWTVGMNRAVQLLAEKVAARKGRNTAKVLKE 779
>gi|254475729|ref|ZP_05089115.1| DNA topoisomerase I [Ruegeria sp. R11]
gi|214029972|gb|EEB70807.1| DNA topoisomerase I [Ruegeria sp. R11]
Length = 886
Score = 581 bits (1497), Expect = e-162, Method: Compositional matrix adjust.
Identities = 340/806 (42%), Positives = 466/806 (57%), Gaps = 62/806 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL A++GSV PDDDF+M WEV + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPAKNGSVEPDDDFAMTWEVGADSRKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L ++ ++ ++ V+RV F+ IT+ ++
Sbjct: 63 KAIADALKDDNALILATDPDREGEAISWHLQEALTKRRSIKKDTAVSRVTFNAITKDAVA 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMKNPRQVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F PQEYW+V+A L L+ A LT +L++ + + T A+ Q
Sbjct: 183 MEIEAFNPQEYWSVKAALTTPRGQELE-----ARLTVLGGDKLDKFDLANSTAAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S V + R P++TSTLQQ+A+ K A M AQ+LYE
Sbjct: 238 VASRALSVTSVEAKPASRNPSAPFMTSTLQQEASRKFGMGARQCMNAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA + R+ I RYG+ + P PR Y K KNAQEAHE IR
Sbjct: 291 --AGHITYMRTDGIDMAPEAVQATRAEIESRYGADYVP-SSPRIYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ R A L L ++D KLY LIW RT+ACQM A + + VDIG+AD+ +V R++
Sbjct: 348 PTDMSRDAASLK-LSEDDQRKLYDLIWKRTIACQMAGARLERTTVDIGSADQQVVLRATG 406
Query: 772 SRVEFLGFQAAYED-----VDAGAIRYKENEENDRHEAFAILNSL--KTGDPLYL----G 820
V F GF YE+ D R + + D + A LN+ K G +
Sbjct: 407 QVVLFDGFLRVYEEGRDDVADEDDKRLPQVMQGDAMKFAASLNAQAEKAGKEASVLSDNS 466
Query: 821 EVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFR 880
V QHHTQPP RY+E +LVK++EELGIGRPSTYAS + +QDR YV L+PE +
Sbjct: 467 AVLALQHHTQPPPRYTEATLVKRMEELGIGRPSTYASVITTIQDREYVRKDKNRLFPEDK 526
Query: 881 GRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLH 940
GR+V+ FL ++F Y FTA++E +LD+VSAG ++K LL +W FS+ + L
Sbjct: 527 GRIVTIFLLNFFRTYVGYEFTANLENQLDDVSAGDADYKELLSKFWRDFSAAISETSDLR 586
Query: 941 IHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
I +V +L++ L+ P +D R CP CG G L K SR G F+GC +P C
Sbjct: 587 ISEVLDVLDEALAPQLYP--PREDGTDPRVCPKCGAGQLHLKTSRTGG--FVGCGNYPEC 642
Query: 997 NYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDR-TGY 1055
NY + + G+ E +++G +++ LKSG +G YVQ GE
Sbjct: 643 NY-TRPISGEGAE----------GYERILGED--DGDEIHLKSGRFGPYVQRGEATPENK 689
Query: 1056 LPKRASV-SHIKDV------DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVR 1108
P R+S+ +D + I LE A+ LL P ++G HP+ G + L R G +
Sbjct: 690 KPPRSSLPKQGRDFLPGWGPNEIGLEQAVTLLTLPRDVGQHPEGGM-VQANLGRFGPYIA 748
Query: 1109 HRRTIASVPKNMKPNDVTLEKALEFL 1134
H++ P KP V L++ L+
Sbjct: 749 HQK-----PDEEKPVYVNLKETLDVF 769
>gi|84516626|ref|ZP_01003985.1| DNA topoisomerase I [Loktanella vestfoldensis SKA53]
gi|84509662|gb|EAQ06120.1| DNA topoisomerase I [Loktanella vestfoldensis SKA53]
Length = 870
Score = 580 bits (1496), Expect = e-162, Method: Compositional matrix adjust.
Identities = 336/814 (41%), Positives = 473/814 (58%), Gaps = 48/814 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV PDDDF M WE+ + + H+
Sbjct: 3 VVVVESPAKAKKINEYLGKGYIVLASYGHVRDLPPKDGSVLPDDDFDMKWEIATDSKKHI 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L ++ A+ ++ V+RVVF+ IT+ +I
Sbjct: 63 KAIVDALKTDNELILATDPDREGEAISWHLTEALTEKKAIRKDTPVSRVVFNAITKTAIL 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++DA LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMKNPRQVDAPLVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F+ QEYWTV+A L F A LT K+L++ +G+ T+A+ Q
Sbjct: 183 MEIEAFRNQEYWTVKAQLQSPRGQ-----MFEARLTALAGKKLDKFDLGNATQAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S + ++ + +R P++TSTLQQ+A+ K A TM +AQ+LYE
Sbjct: 238 VTSRDLKITSVEAKPAIRNPSPPFMTSTLQQEASRKYGMGAKQTMSVAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
+GLITYMRTDG+ ++ EA R I ++G+ + P++ PR Y K KNAQEAHE IR
Sbjct: 291 --SGLITYMRTDGIDMAPEAVTGARDAIKAKFGAQYLPDQ-PRIYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ + A + + D D KLY LI+ RT+A QM A + + VD+ +AD ++ R++
Sbjct: 348 PTDM-MVGADQADIKDVDQRKLYDLIYKRTLASQMAAAQLERTVVDVASADGQVILRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
+ F GF A YE E ++ + L L G+ + V+ +QH TQP
Sbjct: 407 QVMVFDGFIAIYE----------EGRDDTADDDDKRLPQLAQGEKVVKQSVDPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVK++EELGIGRPSTYAS + +QDR YV L P+ +GR+V+AFL +Y
Sbjct: 457 PPRYTEATLVKRMEELGIGRPSTYASIVTTIQDRGYVEKDKNRLIPQDKGRLVTAFLMNY 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + Y FTAD+E +LD VSAG ++K +L +W FS+ L I +V + +
Sbjct: 517 FQKYIGYDFTADLENQLDEVSAGNADYKKVLDRFWRDFSAAIGETADLRIGEVLDKINEV 576
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
LF P D R CP CG G L + +R G G FIGC+ +P C Y +G
Sbjct: 577 LEPHLFP--PTADGTDPRLCPNCGAGRLSMRTARSG-GAFIGCSNYPECRYTRP--FGPP 631
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHIK 1066
D E +++ + KL+GH + +++ + G +G YVQ G P R V
Sbjct: 632 DPE--AEKSAIPPDGKLLGHD--AGDEIRIFKGRFGPYVQRGATSEANPKPDRTGVPEGW 687
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIA---SVPKNMKPN 1123
+ + LE AL LL+ P +G HP+DG + + R G ++H + + N+
Sbjct: 688 PAEEVDLEQALRLLQLPRQIGLHPEDGIMVWANIGRYGPYLKHAASTSDKGGTNANLDGI 747
Query: 1124 D----VTLEKALEFLSGKDVRRCGRPK-GKPKRE 1152
D V + +A++ L+ K R GR K P RE
Sbjct: 748 DEVWTVGMNRAVQLLAEKVASRGGRGKAAAPIRE 781
Score = 47.0 bits (110), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ IG HP V G YG Y++ + A++ I +V ++ + A++LL
Sbjct: 704 PRQIGLHPEDGIMVWANIGRYGPYLKHAASTSDKGGTNANLDGIDEVWTVGMNRAVQLLA 763
Query: 1082 YPV--------------NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
V LG+HP+ G + + + G V+ + A++P + P+D+TL
Sbjct: 764 EKVASRGGRGKAAAPIRELGDHPQAGGAVNIYDGKYGPYVKWDKINATIPDTITPDDLTL 823
Query: 1128 EKALEFLS 1135
+A++ +
Sbjct: 824 AQAIDLID 831
>gi|84501685|ref|ZP_00999857.1| DNA topoisomerase I [Oceanicola batsensis HTCC2597]
gi|84390306|gb|EAQ02865.1| DNA topoisomerase I [Oceanicola batsensis HTCC2597]
Length = 867
Score = 579 bits (1493), Expect = e-162, Method: Compositional matrix adjust.
Identities = 340/805 (42%), Positives = 460/805 (57%), Gaps = 47/805 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV P+ DF M WEV S + H+
Sbjct: 3 VVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPPKDGSVDPEHDFDMKWEVASDSKKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L+ + AL ++ V+RVVF+ IT+A++
Sbjct: 63 KAIADALKDDNALILATDPDREGEAISWHLEEALRNRKALKKDTPVSRVVFNAITQAAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D +LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMKNPRQVDGDLVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F+ +EYW+V A+L F A LT K+L++ I T A+ Q
Sbjct: 183 MEIEAFRAREYWSVTALLATPRGQ-----EFEARLTVLGGKKLDRYDIADATAAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S + V R R P++TSTLQQ+A+ K A TM+ AQ+LYE
Sbjct: 238 VTSRDLSVQSVEARPATRNPSPPFMTSTLQQEASRKFGMGARQTMQAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA + R+ I RYG + P + R Y K KNAQEAHE IR
Sbjct: 291 --AGHITYMRTDGIDMAPEAVEACRAAIAGRYGKDYVPGQA-RVYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ L L + D KLY LIW RT+ACQM+ A + + VDIG+ D + R++
Sbjct: 348 PTDMAADAEALR-LTEPDQKKLYDLIWKRTLACQMESARLERTTVDIGSRDGQVGLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F GF YE E ++ + L + GD + +V QH TQP
Sbjct: 407 QVVLFDGFLRVYE----------EGRDDVVDDDDKRLPQISQGDAMDKRKVTPDQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVK++EELGIGRPSTYAS + +QDR YV L PE +GR+V+AFL +Y
Sbjct: 457 PPRYTEATLVKRMEELGIGRPSTYASIVTTIQDRGYVRKDKNRLIPEDKGRLVTAFLENY 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTAD+E ELD+VSAG ++K +L +W FS+ L I +V + + +
Sbjct: 517 FRKYVEYDFTADLEEELDDVSAGDRDYKDVLGRFWRDFSAAIAETSELRITEVLEKINEV 576
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
LF P +D R CP CG G L + +R G G FIGC+ +P C Y +G
Sbjct: 577 LEPHLFP--PTEDGSDPRLCPHCGAGRLSMRTARSG-GAFIGCSNYPECRYTRP--FGPP 631
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHIK 1066
D E + + E KL+G + +V G +G YVQ GE P R SV
Sbjct: 632 DAE--AEASAIPPEGKLLGVDDGDEIRVF--KGRFGPYVQRGEVTEENKKPPRQSVPKDW 687
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIAS---VPKNMKPN 1123
+ +TLE + LL P +G HP+DG + + R G ++H + + N+
Sbjct: 688 VPEDLTLEQGVMLLTLPRLIGQHPEDGVSVWANIGRYGPYIKHAESTSDRGGTNANLDGI 747
Query: 1124 D----VTLEKALEFLSGKDVRRCGR 1144
D V + +A++ L+ K R GR
Sbjct: 748 DEVWTVGMNRAVQLLAEKVASRGGR 772
>gi|163745854|ref|ZP_02153213.1| DNA topoisomerase I [Oceanibulbus indolifex HEL-45]
gi|161380599|gb|EDQ05009.1| DNA topoisomerase I [Oceanibulbus indolifex HEL-45]
Length = 885
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 336/814 (41%), Positives = 468/814 (57%), Gaps = 49/814 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD Y VL SYGHVRDL + GSV D DF M WEV S + H+
Sbjct: 3 VVVVESPAKAKTINKYLGDNYTVLASYGHVRDLPPKDGSVDTDADFDMKWEVASDSKKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL+ LILA+DPDREGEAI+WH+ E L ++ ++ ++ V+RVVF++IT+ ++
Sbjct: 63 KAIADALAKDNALILATDPDREGEAISWHLQEALTKRKSIKKDTPVSRVVFNQITKKAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMENPRQVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVTLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F+ +EYW+V+A+L +T L K+L++ + T+A+ Q
Sbjct: 183 MEIEAFRAREYWSVKALLATPRGQEFET-----RLVSLAGKKLDRFDLADATQAEMAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I S +V+ + R P++TSTLQQ+A+ K + A TM AQ+LYE
Sbjct: 238 ITSRALKVMNVEAKPASRNPSAPFMTSTLQQEASRKFSMGARQTMSTAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R I +R+G+ + P+E PR Y K KNAQEAHE IR
Sbjct: 291 --AGHITYMRTDGIDMAPEAVTMARDAIADRFGADYVPKE-PRIYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ + L LD D KLY LIW RT+ACQM+ A + + V++G+ D + R++
Sbjct: 348 PTDMTKDAKALK--LDADQAKLYDLIWKRTLACQMESARLERTTVEVGSEDGQVGLRANG 405
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F GF YE+ + +E+D+ L + GD + V +QH TQP
Sbjct: 406 QVVLFDGFLRVYEEGRDDVV-----DEDDKR-----LPQINNGDAMDKRSVTPEQHFTQP 455
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVK++EELGIGRPSTYAS + +QDR YV L PE +GR+V+AFL +Y
Sbjct: 456 PPRYTEATLVKRMEELGIGRPSTYASIVTTIQDREYVRKDGNRLIPEDKGRLVTAFLENY 515
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F Y FTAD+E +LD VSAG +K +L +W FS+ L I +V + + +
Sbjct: 516 FRRYVGYDFTADLEDQLDKVSAGDAAYKEVLRRFWRDFSAAIAETSELRITEVLEKINEV 575
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
LF P +D R CP C G L + +R G G FIGC+ +P C Y +G
Sbjct: 576 LEPHLFP--PTEDGSDPRLCPNCEIGRLSMRTARSG-GAFIGCSNYPECRYTRP--FGPP 630
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHIK 1066
D E + + + KL+G + +V G +G YVQ G P R S+
Sbjct: 631 DPE--AEASAIPPDGKLLGEDQGDEIRVF--KGRFGPYVQRGPVTEENKKPPRQSIPKDW 686
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIAS---VPKNMKPN 1123
+ +TLE + LL P +G HP+DG + + R G ++H + + N++
Sbjct: 687 PAEEVTLEQGVMLLSLPRQIGPHPEDGVMVWSNIGRYGPYIKHAESTSDRGGTNANLEGI 746
Query: 1124 D----VTLEKALEFLSGKDVRRCGRPK-GKPKRE 1152
D V + +A++ L+ K R GR K KP RE
Sbjct: 747 DEVFTVGMNRAVQLLAEKVASRGGRGKAAKPIRE 780
>gi|339320304|ref|YP_004679999.1| DNA topoisomerase I [Candidatus Midichloria mitochondrii IricVA]
gi|338226429|gb|AEI89313.1| DNA topoisomerase I [Candidatus Midichloria mitochondrii IricVA]
Length = 791
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 323/792 (40%), Positives = 467/792 (58%), Gaps = 38/792 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++++VES KAK I YLG Y+V+ SYGHVR L + G+V P+ DF+M +E+P A
Sbjct: 2 NLLIVESPAKAKTIGKYLGPSYKVISSYGHVRALPSEEGAVDPEHDFAMRYEIPPKAAKQ 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +I ++++ LA+DPDREGEAI+WH++E+L+Q+ A+ + V R VFHEIT+ +I
Sbjct: 62 IAAIVAEAKHSDHIYLATDPDREGEAISWHVLEILKQKKAIKNSTKVYRAVFHEITKKAI 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+L+ R+++ +LV A R+ LDYL+GF +SP+LWRKLPG +SAGRVQS AL +IC+R
Sbjct: 122 ADSLKTPRDLNNDLVSAQKTRQGLDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRMICER 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ FK QEYW++ ++ D+ L FQ K+L + + + +A D+
Sbjct: 182 EAEIESFKSQEYWSIHGRFSTEKGEEFDS-----TLIEFQGKKLEKFTTVNEAQAADVIS 236
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
KI +F V + K+ + R P+ TST+ Q+A+ KL FSA T ++AQKLYEG+ + +
Sbjct: 237 KIKDNSFSVKRVEKKKVNRNPQAPFSTSTMIQEASRKLGFSAKKTAQIAQKLYEGINI-N 295
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTD IS EA K LI + YGS++ P PR Y K KNAQEAHEAI
Sbjct: 296 GELTGLITYMRTDSTSISAEATKAASELITKIYGSNYLP-PSPRVYKTKTKNAQEAHEAI 354
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ + P + L+ED KLY LIW+R +A QM A + + VDI + D+ FR++
Sbjct: 355 RPTDVFKKPESIKSFLEEDQFKLYELIWNRLVASQMASAILDVMTVDIAD-DQGNTFRAT 413
Query: 771 CSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S + F GF Y E +D +EE DR IL LK + L L E +QH T
Sbjct: 414 GSSIAFSGFYKVYREGIDDA------DEEKDR-----ILPILKEKELLKLLEAIKEQHFT 462
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E SLVK++EELGIGRPSTY + + +LQDR YV + + PE RGR+V+ FL+
Sbjct: 463 QPPPRYTEASLVKRMEELGIGRPSTYPTIISILQDRKYVIFEKKRFIPEPRGRLVNTFLT 522
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F++ +Y FTA++E +LD ++AG WK ++ D+W F + S+ ++ +E
Sbjct: 523 LFFNQYVEYGFTANLEEQLDEIAAGKVIWKKVMKDFWYPFKNKTDEVLSIKTSEILAKME 582
Query: 950 KTFGDSLFASLPNKDR-------SCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
+ + LF +D C C G L K RFG+ F+ C+ +P CNY
Sbjct: 583 EQLLNYLFHKEILQDSKSIEEVLKCSKCVTGKLQLKNGRFGS--FLACSNYPNCNYTKAI 640
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
D++ +DT D PK++G P +KE+V ++ GPYGFYVQ GE G KR +
Sbjct: 641 GSNDNNMQDTCNEPAVADLPKVLGTDPNTKEEVSIRKGPYGFYVQRGE---GKKVKRTGL 697
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSV---RHRRTIASVPKN 1119
+ +I L A+ LL P LG D + +++R F R + I+
Sbjct: 698 PKDLNYQNIDLNYAIGLLNMPRELG---LDQEGVLIRAGAGKFGPYLERSGKYISLRTAR 754
Query: 1120 MKPNDVTLEKAL 1131
+ P +TLE+AL
Sbjct: 755 IDPVLITLEEAL 766
>gi|119383411|ref|YP_914467.1| DNA topoisomerase I [Paracoccus denitrificans PD1222]
gi|119373178|gb|ABL68771.1| DNA topoisomerase I [Paracoccus denitrificans PD1222]
Length = 851
Score = 577 bits (1488), Expect = e-161, Method: Compositional matrix adjust.
Identities = 342/797 (42%), Positives = 466/797 (58%), Gaps = 54/797 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD Y VL S+GHVRDL + GSV P+ DF+M WEV S + H+
Sbjct: 3 VVVVESPAKAKTINKYLGDDYTVLASFGHVRDLPPKDGSVDPEADFAMKWEVASESKKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I+ AL+ NLILA+DPDREGEAI+WH++E L AL + V+RV F+ IT+A++
Sbjct: 63 KAIRDALAADPNLILATDPDREGEAISWHLLETLAP--ALKKGAEVSRVTFNAITKAAVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL +I DRE
Sbjct: 121 EAMANPRQIDQPLVDAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVALRVIVDRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ FK +EYW+V A L D A +T F K+L + I S +AK
Sbjct: 181 MEIEAFKAREYWSVHARLATPRGDEYD-----ATMTVFGGKKLERFDIASEEQAKLAVAA 235
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I S + +V + + R P++TSTLQQ+A+ KL A M AQ+LYE
Sbjct: 236 ITSRDLRVASVAAKPASRNPWPPFMTSTLQQEASRKLGLGARACMSAAQRLYE------- 288
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R I R+G+ + P + PR Y K KNAQEAHE IR
Sbjct: 289 --AGHITYMRTDGIDMAPEAVMAARDAIKARFGAEYLP-KSPRMYKNKAKNAQEAHECIR 345
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ P L + D+D LY LIW RT+A QM+ A + + V+IG+AD + R++
Sbjct: 346 PTDMMLSPDRLP-VSDKDQKALYDLIWKRTIASQMESARMERTTVEIGSADGQVGLRANG 404
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
+ F GF Y D G R E +E+ R L S++ G+ V +QH TQ
Sbjct: 405 QVMLFDGFLRVY---DQG--RDDEEDEDSRR-----LPSIEEGERAEKRSVTPEQHFTQA 454
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVK++EELGIGRPSTYAS + +QDR+YV + L PE +GR+V+ FL Y
Sbjct: 455 PPRYTEATLVKRMEELGIGRPSTYASIVTTIQDRDYVRKEQNRLIPEDKGRLVTIFLLKY 514
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F Y FTA++E ELD++S+G ++ +L +W F++ L I +V +++
Sbjct: 515 FPRYVSYDFTANLEGELDDISSGERAYREVLRRFWRDFTAALEGTSELRITEVLDAIDEA 574
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
L+ P D R CP+C +G L K +R G G FIGC+ +P C + + + D
Sbjct: 575 LAPHLYP--PRADGSDPRECPLCHKGRLHLKTARSG-GAFIGCSNYPDCRF-TRPISSPD 630
Query: 1008 DE--EDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPK--RASVS 1063
E D + N DE + LK+G +G YVQ GE T PK RAS+
Sbjct: 631 AEVVGDAVLGVDNGDE-------------ISLKNGRFGPYVQRGE-ATAENPKPPRASIP 676
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
D+ S+ LE AL LL P +G+HP+DG P+ + R G V+H A++P +
Sbjct: 677 KGWDLASVDLERALALLSLPREIGSHPEDGVPVEAGIGRYGPYVKHGAKYANLPDVDEVF 736
Query: 1124 DVTLEKALEFLSGKDVR 1140
+ + +A+E L+ K VR
Sbjct: 737 TIGMNRAVEVLASKQVR 753
>gi|254439432|ref|ZP_05052926.1| DNA topoisomerase I [Octadecabacter antarcticus 307]
gi|198254878|gb|EDY79192.1| DNA topoisomerase I [Octadecabacter antarcticus 307]
Length = 888
Score = 576 bits (1485), Expect = e-161, Method: Compositional matrix adjust.
Identities = 322/770 (41%), Positives = 458/770 (59%), Gaps = 53/770 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV PD+DF M+WE+ S + H+
Sbjct: 3 VVVVESPAKAKTINKYLGPGYTVLASYGHVRDLPPKDGSVDPDNDFDMLWEIASDSKKHI 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL+ LILA+DPDREGEAI+WH+ E L+++ ++ + V+RVVF+ IT+ ++
Sbjct: 63 KAIADALANDNELILATDPDREGEAISWHLEETLRKRKSIKRDTPVSRVVFNAITKTAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D LV+AYLARRALDYL+GF +SP+LWR+LPG +SAGRVQS +L +I +RE
Sbjct: 123 EAMKNPRQVDVPLVEAYLARRALDYLVGFKLSPVLWRRLPGAKSAGRVQSVSLRIIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F +EYW+V+A L + +++T LT K+L++ + + T+A+ E
Sbjct: 183 MEIEAFNNREYWSVKAQLSTPRNQAVET-----RLTVLAGKKLDKFDLVNATQAELAETA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+NS + V + + R P++TSTLQQ+A+ K F A TM AQ+LYE
Sbjct: 238 VNSRDLTVKRVEAKPANRNPSAPFMTSTLQQEASRKFGFGARMTMNAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AGLITYMRTDG+ ++ EA E R I +++G + P++ PR Y K KNAQEAHE IR
Sbjct: 291 --AGLITYMRTDGIDMAPEAITEARETIAKKFGKDYIPDK-PRIYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ L A + + D D KLY LI+ RT++ QM+ A + + VDIG+AD I R++
Sbjct: 348 PTDL-MLDATSAKIADPDQRKLYDLIYKRTVSSQMEAARMERTTVDIGSADGQIELRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F GF A YE+ G ++++D+ L + TG+ + V +QH TQP
Sbjct: 407 QVVLFDGFLAIYEE---GRDDDAGDDDDDKR-----LPQMATGEKMAKTSVTAEQHFTQP 458
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVK++EELGIGRPSTYAS + +QDR YV + L PE +GR+V+AFL+++
Sbjct: 459 PPRYTEATLVKRMEELGIGRPSTYASIVTTIQDREYVRKEKNRLIPEDKGRLVTAFLTNF 518
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + Y +TA +E ELD+VSAG ++K +L D+W F A + I QV + +
Sbjct: 519 FRKYVGYDYTASLEEELDHVSAGEADYKKVLSDFWGDFKITIDEAMDMSITQVLDKINEV 578
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
+F PN++ R CP C G L + +R G G FIGC+ +P C Y +G
Sbjct: 579 LAPHIFP--PNEEGTDPRLCPNCNVGRLSMRTARSG-GAFIGCSNYPECKYT--RAFGPP 633
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKE-------KVLLKSGPYGFYVQLGE-DRTGYLPKR 1059
++D G P KE K+ + G +G Y Q GE P R
Sbjct: 634 GQDDA------------SGIPPEGKELGVDDGDKIWIHKGRFGPYAQRGEVTEDNKKPNR 681
Query: 1060 ASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
SV + +TLE A+ LL P +G HP+DG + + R G ++H
Sbjct: 682 QSVPKEWPPEDVTLETAVRLLSLPRLIGTHPEDGVNVFANIGRYGPYIKH 731
>gi|110679406|ref|YP_682413.1| DNA topoisomerase I [Roseobacter denitrificans OCh 114]
gi|109455522|gb|ABG31727.1| DNA topoisomerase I, putative [Roseobacter denitrificans OCh 114]
Length = 878
Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust.
Identities = 333/765 (43%), Positives = 452/765 (59%), Gaps = 43/765 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD Y VL SYGHVRDL + GSV PD DF M+WEV + H+
Sbjct: 3 VVVVESPAKAKTINAYLGDDYTVLASYGHVRDLPPKDGSVNPDADFEMLWEVGYDSRKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L ++ ++ ++ V+RVVF+ IT+A++
Sbjct: 63 KAIADALKEDNALILATDPDREGEAISWHLQEALTKRKSIKKDTPVSRVVFNAITKAAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+Q R++D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMQNPRQVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVTLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F+ +EYW+V+A+L F A LT K+L++ I + T+A+ Q
Sbjct: 183 MEIEAFRAREYWSVKALLATPRGQ-----EFEAKLTVLAGKKLDRFDIENQTQAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I S + V K+ + +NP+ P++TSTLQQ+A+ K A TM AQ+LYE
Sbjct: 238 ITSRDLSV-KSVEAKPANRNPSAPFMTSTLQQEASRKFGMGARQTMSTAQRLYE------ 290
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
AG ITYMRTDG+ ++ EA R I YGS + PE+ PR Y K KNAQEAHE +
Sbjct: 291 ---AGYITYMRTDGIDMAPEAVTAARDAIKTLYGSKYVPEK-PRIYKNKAKNAQEAHECV 346
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ L D D KLY LIW RT+ACQM+ A + + +I + D + R++
Sbjct: 347 RPTDMMTKAEDLK-TTDADQRKLYDLIWKRTLACQMEAARMERTTAEIASEDGQVGLRAT 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
+ F GF YE+ G +++D+ L + GD L V +QH TQ
Sbjct: 406 GQVMLFDGFLRVYEE---GRDDVAVVDDDDKR-----LPQIDQGDRLDKRTVTPEQHFTQ 457
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E +LVK++EELGIGRPSTYAS + +QDR YV L PE +GR+V+AFLS+
Sbjct: 458 PPPRYTEATLVKRMEELGIGRPSTYASVVTTIQDREYVRKDKNRLIPEDKGRLVTAFLSN 517
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF + Y FTAD+E +LD VSAG ++K +L +W FS+ L I +V + + +
Sbjct: 518 YFRKYIGYDFTADLEDQLDTVSAGNADYKEVLGRFWRDFSAAIAETADLRITEVLEKINE 577
Query: 951 TFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
LF PN+D R CP CG G L + +R G G FIGC+ +P C Y +G
Sbjct: 578 VLEPHLFP--PNEDGSDPRLCPNCGAGRLSMRTARSG-GAFIGCSNYPECRYT--RAFGP 632
Query: 1007 DDEEDTLQRNTNV-DEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSH 1064
EED ++ + E KL+G +K+ G +G YVQ GE P R S+
Sbjct: 633 PGEED----DSGIPPEGKLLGED--GDDKIYAFKGRFGPYVQRGEVTEDNKKPPRQSIPK 686
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
+ + L AL+LL P +G HP+DG + + R G ++H
Sbjct: 687 DWPPEDVDLPQALKLLSLPREIGPHPEDGIMVWANIGRYGPYLKH 731
>gi|145348029|ref|XP_001418460.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578689|gb|ABO96753.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 840
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 324/791 (40%), Positives = 469/791 (59%), Gaps = 54/791 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
+++++VES KAK I+ YLG +VL SYGHVRDL + GSVRP++ F+M W S
Sbjct: 68 RTLMIVESPAKAKTIEKYLGANAKVLASYGHVRDLVNKQGSVRPEESFAMTWTSTSRQKA 127
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
++ I AL + L+LA+DPDREGEAI+WH++E+L+++ L +++ V RV F EIT+ +
Sbjct: 128 AMRDITEALKKTDVLLLATDPDREGEAISWHLLEVLREKKLLRDDLDVKRVTFGEITKTA 187
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPG--CQSAGRVQSAALSLI 527
+ A+ + R+I+ +V AY+ARRALDYL GF +S LLWRKLP SAGRVQS AL L+
Sbjct: 188 VLDAVGSPRDINVPMVDAYMARRALDYLFGFTLSGLLWRKLPSSVSLSAGRVQSVALRLV 247
Query: 528 CDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 587
C+RE E++ F + YWTV+A L K+ + D A LTH +L + +I S+ EA+
Sbjct: 248 CEREEEVEAFVSEPYWTVKASLSSKDGSTFD-----AALTHVDGAKLGKFTIASNDEAEA 302
Query: 588 IEQKINSAN-FQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+++ + +V++ R + P+ TST+QQ+A +L F A+ TM AQ+LYEG
Sbjct: 303 YAKRVRECDTLRVVEVKHSEAKRTSGPPFTTSTMQQEANKQLGFGASRTMSAAQRLYEGA 362
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
GT GLITYMRTDG +++ A + +R+ E +G + PE PR + KK KNAQEA
Sbjct: 363 ----GTGEGLITYMRTDGTYVAPHAIESLRTTAGELFGDEYVPES-PRYFKKKQKNAQEA 417
Query: 707 HEAIRPTDIRRLPAMLSGLL--DEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES 764
HEAIRPT RLPA ++ + D +LY+LIW+RTMA QM PA +I +I +A+
Sbjct: 418 HEAIRPTKAGRLPAQVARQIGPGSDEARLYALIWARTMASQMSPALTDRIAAEIASAEND 477
Query: 765 IVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYL---GE 821
+ +++ R++F GF AAY A ++ A L L G+ L + GE
Sbjct: 478 LKLKANGHRLKFPGFLAAYRTSRPEAAPPSDD---------AWLPILGEGEGLSVKTDGE 528
Query: 822 ---VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPE 878
E +H T PP RY++GS+VK LEE GIGRPSTYA LKVL R YV + L P
Sbjct: 529 SLGCEATEHKTSPPPRYTDGSIVKALEERGIGRPSTYAPILKVLAQREYVAKQGAALVPT 588
Query: 879 FRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQS 938
RGR+VSAFL++YF DY FTAD+E +LD++++ +WK LL ++W+ F +
Sbjct: 589 TRGRLVSAFLTNYFETYVDYGFTADLEHKLDDITSEQVQWKPLLEEWWTPFRDKISSLSE 648
Query: 939 LHIHQVEKMLEKTFGDSLFASLPNKD------RSCPVCGEGTLIFKVSRFGAGYFIGCNQ 992
L + +V L++ G LF + D R CP C G L K S+ AG FIGC++
Sbjct: 649 LRVSEVIDALDEKLGQHLFGEATDSDDVVSEARRCPSCKIGRLGLKPSK--AGGFIGCSR 706
Query: 993 HPRCNY------IAKTLYGDDDEED---TLQRNTNVDEPKLIGHHPASKEKVLLKSGPYG 1043
+P C + I + D D+ D T++ V PK++G PA+ +++ L+ GPYG
Sbjct: 707 YPECGFTHPLHPIRGAIVSDTDDPDFVATVEDPDAVMYPKVLGVDPATGKEISLRLGPYG 766
Query: 1044 FYVQLGED------RTGYLPKRASVSHI-KDVDSITLEDALELLRYPVNLGNHPKDGQPI 1096
Y+QLG+ + P+R V++I KDV+ ITL +A+ + YP LG HP P+
Sbjct: 767 PYLQLGDGKKAKKPKKPPAPRRVGVANIGKDVNKITLAEAIGMFEYPKVLGVHPVTQAPV 826
Query: 1097 MLRLARAGFSV 1107
L + G+ V
Sbjct: 827 SLNIGPFGWYV 837
>gi|346993579|ref|ZP_08861651.1| DNA topoisomerase I subunit omega [Ruegeria sp. TW15]
Length = 873
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 340/822 (41%), Positives = 461/822 (56%), Gaps = 80/822 (9%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV P+ +FSM WEV + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGPDYTVLASYGHVRDLPPKDGSVDPEHEFSMKWEVGNDSRKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L ++ ++ ++ V+RV F+ IT+ ++
Sbjct: 63 KAIADALKEDNALILATDPDREGEAISWHLQEALTKRRSIKKDTPVSRVTFNAITKDAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+Q RE+D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMQNPREVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ FKP EYW+V A+ + ++ A L K+L++ + + T+A+ Q
Sbjct: 183 MEIEAFKPVEYWSVRALFETPRGQ-----TYEARLVTLAGKKLDKHDLTNATQAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I S V + R P++TSTLQQ+A+ K A + M++AQ+LYE
Sbjct: 238 ITSRALSVTSVEAKPAARNPSAPFMTSTLQQEASRKFGLGARHAMQVAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R I +RYG + P + PR Y K KNAQEAHE IR
Sbjct: 291 --AGYITYMRTDGIDMAPEAVAATRDAISDRYGPEYVP-DSPRMYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ R L + DED KLY LIW RT+ACQM A + + V+IG+ D + R++
Sbjct: 348 PTDMSRDAKALK-VTDEDQRKLYDLIWKRTIACQMAAARLERTTVEIGSDDGQVGLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK------ 825
V F GF YE E ++ + L + GDP + L+
Sbjct: 407 QVVLFDGFMRVYE----------EGRDDVVDDDDKRLPQIMQGDPARFAKTSLRDQFTKA 456
Query: 826 -------------------QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRN 866
QHHTQPP RY+E +LVK++EELGIGRPSTYAS + +QDR
Sbjct: 457 TSDSDKAAILSDNEAVLALQHHTQPPPRYTEATLVKRMEELGIGRPSTYASIVTTIQDRE 516
Query: 867 YVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYW 926
YV L PE +GR+V+ FL ++F + Y FTA++E ELD+VSAG ++K LL +W
Sbjct: 517 YVRKDKNRLIPEEKGRIVTIFLLNFFRQYVGYEFTANLEEELDDVSAGDRDYKDLLGKFW 576
Query: 927 SRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRF 982
FS+ L I +V L++ L+ P +D R CP CG G L K SR
Sbjct: 577 RDFSAAIGETSELRISEVLDKLDEALAPQLYP--PREDGSDPRVCPKCGVGQLHLKTSRT 634
Query: 983 GAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPY 1042
G F+GC +P C Y + + G+ E D +L+G +++ LKSG +
Sbjct: 635 GG--FVGCGNYPECTY-TRPIAGEGAEGDE----------RLLGEDVG--DEIWLKSGRF 679
Query: 1043 GFYVQLGEDRT-GYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLA 1101
G YVQ GE P RAS+ + D + LE AL LL P +G HP+ G I
Sbjct: 680 GPYVQRGEPTPENKKPPRASLPRGWNKDDMDLEKALTLLSLPRQIGEHPEGGM-INSNFG 738
Query: 1102 RAGFSVRHRRTIASVP--KNMK-PNDV---TLEKALEFLSGK 1137
R G + H+ + P N+K PNDV + +A+E L+ K
Sbjct: 739 RFGPYIMHQLPEEAKPVYVNVKDPNDVFEIGMNRAVEMLAEK 780
>gi|94497603|ref|ZP_01304172.1| DNA topoisomerase [Sphingomonas sp. SKA58]
gi|94423020|gb|EAT08052.1| DNA topoisomerase [Sphingomonas sp. SKA58]
Length = 855
Score = 573 bits (1477), Expect = e-160, Method: Compositional matrix adjust.
Identities = 320/763 (41%), Positives = 449/763 (58%), Gaps = 53/763 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG + VL SYGH+RDL + GSV PD+ F+M WE L
Sbjct: 3 LVIVESPAKAKTIEKYLGGDFHVLASYGHIRDLPPKDGSVDPDNGFAMSWENYGDKGKQL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I A+ LILA+DPDREGEAI+WH+ E+L+ + AL + V RV F+ IT+A++
Sbjct: 63 KAIADEAKKADRLILATDPDREGEAISWHVQEVLRAKKALPQK--VDRVTFNAITKAAVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R +D +L+ AY ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ +RE
Sbjct: 121 EAMAQPRALDEDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVERE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F PQEYW+V A +++ +F A L ++ +++ +L+IG +A +
Sbjct: 181 REIESFSPQEYWSVAAEMEQGGQ------AFTARLVRWKGEKIERLTIGKEGDAMAAKAD 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + F V K + + R P P+ TSTLQQ+AA KL FSA++TM++AQ+LYE
Sbjct: 235 VEAGRFTVDKVETKPLTRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQQLYED------ 288
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G ITYMRTDG+ + A R I +RY + PE+ PR+Y K KNAQEAHEAIR
Sbjct: 289 ---GAITYMRTDGVQMDGSAISAARKAIADRYDGGYLPEK-PRQYQTKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+ R A SG D +LY LI+ R +A QM A + + +D+ + S R++
Sbjct: 345 PTEFGRDKAG-SG----DHARLYDLIFKRALASQMASARLERTTIDMVDGSGSHTLRATG 399
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F GF A YE+ +++ E+D + +L + GD +V +QH TQP
Sbjct: 400 QVVIFPGFLALYEEG-------RDDSEDDDAK---LLPRMAAGDAPAKKKVSAEQHFTQP 449
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVK+LEELGIGRPSTYASTL+VL+DR+YV V+ + E GR+V+AFL +
Sbjct: 450 PPRYSEASLVKRLEELGIGRPSTYASTLQVLKDRDYVRVEKNRFFAEESGRLVTAFLERF 509
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F Y FTA +E ELD++S G +W+ +L +W F + L+K
Sbjct: 510 FERYVSYDFTAGLEDELDDISGGRAQWQDVLEAFWRDFKPKTAEVMEQKPSDITAELDKF 569
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK-TLYGD 1006
LF P D R+CP+CG+G L + RFGA FI C+ +P C Y K G
Sbjct: 570 LEPMLFP--PKADGSNPRACPMCGDGQLALRGGRFGA--FIACSNYPDCKYTRKFGQPGG 625
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
D EDT P+++G HP + + + KSG +G Y+++GE G KR S+
Sbjct: 626 KDGEDT--------GPEVLGQHPETGQDITRKSGRFGPYIEMGE---GKEAKRGSIPKDL 674
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
+TL+ A++LL P +G HP+ G+PI+ + R G + H
Sbjct: 675 PDGELTLDWAVKLLSLPREVGLHPETGKPIVANIGRFGPYLLH 717
>gi|359401281|ref|ZP_09194251.1| DNA topoisomerase I [Novosphingobium pentaromativorans US6-1]
gi|357597352|gb|EHJ59100.1| DNA topoisomerase I [Novosphingobium pentaromativorans US6-1]
Length = 859
Score = 573 bits (1476), Expect = e-160, Method: Compositional matrix adjust.
Identities = 330/764 (43%), Positives = 462/764 (60%), Gaps = 57/764 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++VL SYGHVRDL + GSVRPD+ F M WE+ +
Sbjct: 3 LVIVESPAKAKTIEKYLGKDFKVLASYGHVRDLPPKDGSVRPDEGFEMDWELYGDKQKQV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
++I A ++ LILA+DPDREGEAI+WH++E+L+++ AL ++ V RV F+ IT+ ++
Sbjct: 63 RAITDAAKVSDRLILATDPDREGEAISWHVLELLKKRRALPKD--VQRVTFNAITKDTVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+QA RE+D +L+ AYLARRALDYL GF +SP+LWRKLPG +SAGRVQS AL LI DRE
Sbjct: 121 KAMQAPRELDQDLIDAYLARRALDYLFGFTLSPVLWRKLPGAKSAGRVQSVALRLIVDRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+PQEYW+V A++++ D F A L F+ ++L++LS+G A +
Sbjct: 181 REIEAFRPQEYWSVAALMEQ------DGTPFTAKLVAFEGQKLDRLSLGDEGIAMRAKAA 234
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ F+V +N + R+NP P + TSTLQQ+A+ KL FSA+ TM++AQ LYE
Sbjct: 235 VEQGAFKV-ENVETKPHRRNPQPPFTTSTLQQEASRKLGFSASQTMRVAQSLYE------ 287
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
AG ITYMRTDG+ + A R I +RY H+ PE+ PR Y K KNAQEAHEAI
Sbjct: 288 ---AGAITYMRTDGVQMDPSAISACRKAISDRYDGHYLPEK-PRHYETKAKNAQEAHEAI 343
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT+ R SG D +LY LI+ R MA QM A + + + + + R++
Sbjct: 344 RPTEFTR-DRFGSG----DEARLYDLIFKRAMASQMASAALERTTITLRDGTGRNELRAT 398
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
V+F GF A YE+ ++ +E+D E +L +++GD +V +QH TQ
Sbjct: 399 GQVVKFPGFLAVYEEG-------RDQKEDD--EESGLLPMMRSGDAPAKKDVTAEQHFTQ 449
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP R+SE SLVK+LEELGIGRPSTYA+T++VL+DRNYV + + E GR+++AFL
Sbjct: 450 PPPRFSEASLVKRLEELGIGRPSTYAATIQVLKDRNYVRTEKNRFFAEESGRLLTAFLER 509
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F Y FTA ME ELD+VS G WK LL +W F +V ++L++
Sbjct: 510 FFERYVAYDFTAGMEEELDDVSGGRHAWKELLEAFWRDFKPKSDEVMERKPSEVTEVLDE 569
Query: 951 TFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
D LF P KD R+CP C +G L + R+GA F+ C+ +P C + K
Sbjct: 570 FLSDYLF---PPKDDGSDPRACPKCADGRLALRGGRYGA--FVACSNYPECKFTRKFAQP 624
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+ E T DE +G HP + E++ + G +G Y+QLGE G KRAS+
Sbjct: 625 GGNGE------TADDEE--LGKHPETGEEITRRVGRFGPYIQLGE---GKEAKRASIP-- 671
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
KD+D +TL+ AL+LL P +G HP+ G+ I+ + R G + H
Sbjct: 672 KDIDELTLDWALKLLSLPREVGKHPETGKEIVANIGRYGPYLLH 715
>gi|334142359|ref|YP_004535567.1| DNA topoisomerase I [Novosphingobium sp. PP1Y]
gi|333940391|emb|CCA93749.1| DNA topoisomerase I [Novosphingobium sp. PP1Y]
Length = 880
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 329/764 (43%), Positives = 458/764 (59%), Gaps = 57/764 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++VL SYGHVRDL + GSVRPD+ F M WE+ +
Sbjct: 3 LVIVESPAKAKTIEKYLGKDFKVLASYGHVRDLPPKDGSVRPDEGFEMDWELYGDKQKQV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
++I A ++ LILA+DPDREGEAI+WH++E+L+++ AL ++ V RV F+ IT+ ++
Sbjct: 63 RAITDAAKVSDRLILATDPDREGEAISWHVLELLKKRRALPKD--VQRVTFNAITKDTVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+QA RE+D +L+ AYLARRALDYL GF +SP+LWRKLPG +SAGRVQS AL LI DRE
Sbjct: 121 KAMQAPRELDQDLIDAYLARRALDYLFGFTLSPVLWRKLPGAKSAGRVQSVALRLIVDRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+PQEYW+V A +++ D F A L F+ ++L++LS+G A +
Sbjct: 181 REIEAFRPQEYWSVAAHMEQ------DGTPFTAKLVAFEGQKLDRLSLGDEGIAMRAKAA 234
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ F+V +N + R+NP P + TSTLQQ+A+ KL FSA+ TM++AQ LYE
Sbjct: 235 VEQGAFKV-ENVETKPHRRNPQPPFTTSTLQQEASRKLGFSASQTMRVAQSLYE------ 287
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
AG ITYMRTDG+ + A R I +RY H+ PE+ PR Y K KNAQEAHEAI
Sbjct: 288 ---AGAITYMRTDGVQMDPSAISACRKAISDRYDGHYLPEK-PRHYETKAKNAQEAHEAI 343
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT+ R SG D +LY LI+ R MA QM A + + + + + R++
Sbjct: 344 RPTEFTR-DRFGSG----DEARLYDLIFKRAMASQMASAALERTTITLRDGTGRNELRAT 398
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
V+F GF A YE+ ++ D E +L +++GD +V +QH TQ
Sbjct: 399 GQVVKFPGFLAVYEE---------GRDQKDDDEESGLLPMMRSGDAPAKKDVTAEQHFTQ 449
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP R+SE SLVK+LEELGIGRPSTYA+T++VL+DRNYV + + E GR+++AFL
Sbjct: 450 PPPRFSEASLVKRLEELGIGRPSTYAATIQVLKDRNYVRTEKNRFFAEESGRLLTAFLER 509
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F Y FTA ME ELD+VS G WK LL +W F +V ++L++
Sbjct: 510 FFERYVAYDFTAGMEEELDDVSGGRHAWKELLEAFWRDFKPKSDEVMERKPSEVTEVLDE 569
Query: 951 TFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
D LF P KD R+CP C +G L + R+GA F+ C+ +P C + K
Sbjct: 570 FLSDYLF---PPKDDGSDPRACPKCADGRLALRGGRYGA--FVACSNYPECKFTRKFAQP 624
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+ E T DE +G HP + E++ + G +G Y+QLGE G KRAS+
Sbjct: 625 GGNGE------TADDEE--LGKHPETGEEITRRVGRFGPYIQLGE---GKEAKRASIP-- 671
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
KD+D +TL+ AL+LL P +G HP+ G+ I+ + R G + H
Sbjct: 672 KDIDELTLDWALKLLSLPREVGKHPETGKEIVANIGRYGPYLLH 715
>gi|254461742|ref|ZP_05075158.1| DNA topoisomerase I [Rhodobacterales bacterium HTCC2083]
gi|206678331|gb|EDZ42818.1| DNA topoisomerase I [Rhodobacteraceae bacterium HTCC2083]
Length = 867
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 341/819 (41%), Positives = 470/819 (57%), Gaps = 61/819 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV DF M WEV + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGPNYTVLASYGHVRDLPPKDGSVDTAADFEMKWEVGNDSKKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L ++ ++ ++ V+RVVF+ IT+ ++
Sbjct: 63 KAIADALKEDNELILATDPDREGEAISWHLQEALTKRKSIKKDTPVSRVVFNAITKTAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L +I +RE
Sbjct: 123 EAMKNPRQVDQPLVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRIIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F +EYW+V+A+L F A LT ++L++ + + T A+ Q
Sbjct: 183 EEIEAFNAREYWSVKALLATPRGQ-----EFEARLTVLGGQKLDRYDLANQTAAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S + + + R P++TSTLQQ+A+ K F A TM +AQ+LYE
Sbjct: 238 VTSRALKAVSVEAKPAARNPSAPFMTSTLQQEASRKFGFGARQTMNIAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA E R +I +RYG+ + P + PR+Y K KNAQEAHE IR
Sbjct: 291 --AGHITYMRTDGIDMAPEAIIETRDVIKDRYGTDYLP-KAPREYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ + A L L + D KLY LIW RT+ACQM+ A + + VD+G+ D + R++
Sbjct: 348 PTDLAKDAASLK-LSEPDQRKLYDLIWKRTIACQMESARMERTTVDLGSDDSQVQMRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F GF YE+ + +E+D+ L + GDP+ + +QHHTQP
Sbjct: 407 QVVLFEGFMKVYEEGRDDTV----VDEDDKR-----LPQVAMGDPMDKRAITPEQHHTQP 457
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVK++EELGIGRPSTYAS + +QDR YV L+PE +GR+V+ FL ++
Sbjct: 458 PPRYTEATLVKRMEELGIGRPSTYASIVTTIQDREYVRKDKNRLFPEDKGRIVTIFLMNF 517
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + Y FTAD+E++LD+VSAG ++K LL +W F + + L I +V +L+
Sbjct: 518 FRQYVGYDFTADLESQLDDVSAGEADYKKLLGKFWRDFHAAISETSELRISEVLDVLDAA 577
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
L+ P +D R CP CG G L K SR G F+GC +P C Y
Sbjct: 578 LAPQLYP--PREDGTDPRVCPKCGLGNLHLKTSRTGG--FVGCGNYPECTYTRPIAGEGA 633
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHIK 1066
D E+ L DE + LKSG +G YVQ GE PKR S+ +
Sbjct: 634 DGEEQLLGTDEGDE-------------IWLKSGRFGPYVQRGEVTPENKKPKRTSLPQAR 680
Query: 1067 ----DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPK--NM 1120
D TLE A++LL P +G HP+ G+ I L R G + H+ A P N+
Sbjct: 681 HGGWDKADTTLEKAIKLLSLPRGIGEHPEGGR-ISANLGRFGPYIMHKLPNAEKPTYVNV 739
Query: 1121 KPND----VTLEKALEFLSGKDV---RRCGRPKGKPKRE 1152
K D V + A+E L+ K RR G+ KP +E
Sbjct: 740 KTWDEMFEVGMNLAVELLADKRANPGRRGGQAAAKPLKE 778
>gi|85705144|ref|ZP_01036244.1| DNA topoisomerase I [Roseovarius sp. 217]
gi|85670466|gb|EAQ25327.1| DNA topoisomerase I [Roseovarius sp. 217]
Length = 906
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 337/836 (40%), Positives = 467/836 (55%), Gaps = 79/836 (9%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD Y VL SYGHVRDL A+ GSV + F M WE+ + H+
Sbjct: 3 VVVVESPAKAKTINKYLGDGYTVLASYGHVRDLPAKDGSVDTEHGFEMTWEIGVDSRKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L+++ A+ ++ V+RVVF+ IT++++
Sbjct: 63 KAIADALKDDNALILATDPDREGEAISWHLEETLRKRKAITKDTPVSRVVFNAITKSAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++DA LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMKNPRQVDAPLVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F +EYW+V+AVL + A L K+L++ + + T+A+ Q
Sbjct: 183 MEIEAFTAREYWSVKAVLTTPRGQ-----DYEARLVSLAGKKLDKFDLENATQAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I S V + R P++TSTLQQ+A+ K A M AQ+LYE
Sbjct: 238 ITSRTLTVTSVEAKPASRNPSAPFMTSTLQQEASRKFGMGAKQCMSAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R I +R+G + P + PR Y K KNAQEAHE IR
Sbjct: 291 --AGYITYMRTDGIDMAPEAVMAARDAIKDRFGPEYLP-KSPRMYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT++ R + D D KLY LIW RT+ACQM+ A + + V+IG+ D + R++
Sbjct: 348 PTEMTRDAGHIK-TSDADQRKLYDLIWKRTLACQMEAARMERTTVEIGSNDGQVGLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK------ 825
+ F GF YE+ +E+DR L + G+P + L+
Sbjct: 407 QVMLFEGFLKVYEEGRDDV----SGDEDDRR-----LPQIMQGEPAAFAKSSLRAEFAKA 457
Query: 826 --------------------QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDR 865
QH TQPP RY+E +LVKK+EELGIGRPSTYAS L +QDR
Sbjct: 458 SDGAESTAAVLSPNEAILGLQHFTQPPPRYTEATLVKKMEELGIGRPSTYASVLTTIQDR 517
Query: 866 NYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDY 925
YV + L+PE +GR+V+ FL ++F + Y FTA++E +LD VSAG ++K +L +
Sbjct: 518 EYVRKEQNRLFPEDKGRIVTVFLINFFRKYVGYEFTANLEEDLDRVSAGEADYKEILARF 577
Query: 926 WSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSR 981
W FS+ L I +V +L+ +L+ P +D R CP+CG G L K SR
Sbjct: 578 WRDFSAAIAETSELRITEVLTVLDAALAPTLYP--PREDGSDPRQCPLCGTGQLHLKTSR 635
Query: 982 FGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGP 1041
+G F+GC +P C Y + + GD E+ +++G E + L+SG
Sbjct: 636 --SGGFVGCGNYPECRY-TRPIGGDAGEKGD----------RILGEDENGIE-ISLRSGR 681
Query: 1042 YGFYVQLGE-DRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRL 1100
+G YVQ GE P RAS+ +++TLE AL LL P +G HP+ G I
Sbjct: 682 FGPYVQRGEATEENKKPDRASLPKGWSAEAMTLEKALTLLSLPREVGQHPEGGM-ISANF 740
Query: 1101 ARAGFSVRHRRTIASVP--KNMK-PNDV---TLEKALEFLSGKDVRRCGRPKGKPK 1150
R G + H+ + P N+K PNDV + +A+E L+ K GR + K
Sbjct: 741 GRFGPYLMHQSPEEAKPVYANLKDPNDVFEIGMNRAVELLAAKRANPGGRGRAAAK 796
>gi|400753473|ref|YP_006561841.1| DNA topoisomerase TopA [Phaeobacter gallaeciensis 2.10]
gi|398652626|gb|AFO86596.1| DNA topoisomerase TopA [Phaeobacter gallaeciensis 2.10]
Length = 890
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 340/810 (41%), Positives = 464/810 (57%), Gaps = 70/810 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL A++GSV PDDDF+M WEV + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPAKNGSVEPDDDFAMTWEVGADSRKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L ++ ++ ++ V+RV F+ IT+ ++
Sbjct: 63 KAIADALKDDNALILATDPDREGEAISWHLQEALTKRRSIKKDTAVSRVTFNAITKEAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMKNPRQVDLPLVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ FKPQEYW+V+A L F A LT +L++ ++ + T A+ Q
Sbjct: 183 MEIEAFKPQEYWSVKASLATPRGQ-----EFEARLTVLGGDKLDKYALANSTAAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S V + R P++TSTLQQ+A+ K A M AQ+LYE
Sbjct: 238 VASRTLTVQSVEAKPASRNPSAPFMTSTLQQEASRKFGMGAKQCMNAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA +E R+ I RYG+ + P PR Y K KNAQEAHE IR
Sbjct: 291 --AGYITYMRTDGIDMAPEAVQEARAEIANRYGAEYVP-GSPRIYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT++ R L + ++D KLY LIW RT+ACQM+ A + + VDIG+ D +V R++
Sbjct: 348 PTEMGRDAKSLK-VSEDDQRKLYDLIWKRTLACQMEGARLERTTVDIGSNDGQVVLRATG 406
Query: 772 SRVEFLGFQAAYED--VDAGAIRYKENEENDRHEAFAILNSL-------KTG------DP 816
+ F GF YE+ D K + + E+ SL TG D
Sbjct: 407 QVMLFDGFLRVYEEGRDDVVDDDDKRLPQIMQGESLKFAASLAAQAEKADTGGAILSDDK 466
Query: 817 LYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILY 876
LG QHHTQPP R++E +LVK++EELGIGRPSTYAS + +QDR YV L+
Sbjct: 467 AVLG----LQHHTQPPPRFTEATLVKRMEELGIGRPSTYASVITTIQDREYVRKDKNRLF 522
Query: 877 PEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCA 936
PE +GR+V+ FL ++F Y FTA++E ELD+VSAG ++K LL +W FS+ +
Sbjct: 523 PEDKGRIVTIFLLNFFRTYVGYEFTANLEGELDDVSAGDRDYKDLLSRFWRDFSAAISET 582
Query: 937 QSLHIHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQ 992
L I +V +L+ L+ P +D R CP CG G L K SR G F+GC
Sbjct: 583 SDLRITEVLDVLDDALAPQLYP--PREDGVDPRVCPKCGAGQLHLKTSRTGG--FVGCGN 638
Query: 993 HPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDR 1052
+P CNY + + G+ E +++G +++ LKSG +G YVQ GE
Sbjct: 639 YPECNY-TRPISGEGAE----------GYERILGED--DGDEIHLKSGRFGPYVQRGEAT 685
Query: 1053 -TGYLPKRASV-SHIKDV------DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAG 1104
P R+S+ KD + +TLE A+ LL P +G HP+ G I L R G
Sbjct: 686 PENKKPPRSSLPKQGKDFLPGWGPNEVTLEQAVTLLTLPREIGQHPEGGA-IQANLGRFG 744
Query: 1105 FSVRHRRTIASVPKNMKPNDVTLEKALEFL 1134
+ H++ P KP V L++ L+
Sbjct: 745 PYIAHQK-----PDEEKPVYVNLKETLDVF 769
>gi|339502814|ref|YP_004690234.1| DNA topoisomerase 1 [Roseobacter litoralis Och 149]
gi|338756807|gb|AEI93271.1| DNA topoisomerase 1 [Roseobacter litoralis Och 149]
Length = 878
Score = 571 bits (1471), Expect = e-159, Method: Compositional matrix adjust.
Identities = 331/765 (43%), Positives = 452/765 (59%), Gaps = 43/765 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD Y VL SYGHVRDL + GSV PD F M+WEV + H+
Sbjct: 3 VVVVESPAKAKTINSYLGDNYTVLASYGHVRDLPPKDGSVDPDAGFEMLWEVGYDSRKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L ++ ++ ++ V+RVVF+ IT+A++
Sbjct: 63 KAIADALKEDNALILATDPDREGEAISWHLQEALTKRKSIKKDTPVSRVVFNAITKAAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+Q R++D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMQNPRQVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVTLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F+ +EYW+V+A+L S F A LT K+L++ I + T+A+ Q
Sbjct: 183 MEIEAFRAREYWSVKALLATPRSQ-----EFEARLTVLAGKKLDRFDIENQTQAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I S + V K+ + +NP+ P++TSTLQQ+A+ K A TM AQ+LYE
Sbjct: 238 ITSRDLSV-KSVEAKPANRNPSAPFMTSTLQQEASRKFGMGARQTMSTAQRLYE------ 290
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
AG ITYMRTDG+ ++ EA R I YG+ + P + PR Y K KNAQEAHE +
Sbjct: 291 ---AGYITYMRTDGIDMAPEAVSAARDAIKTLYGADYVP-KSPRIYKNKAKNAQEAHECV 346
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD+ L D D KLY LIW RT+ACQM+ A + + +I + D I R++
Sbjct: 347 RPTDMMTKAEDLK-TSDADQRKLYDLIWKRTLACQMEAARLERTTAEIASEDGQIGLRAT 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
+ F GF YE+ G +++D+ L + GD L V +QH TQ
Sbjct: 406 GQVMLFDGFLRVYEE---GRDDVAVVDDDDKR-----LPQIGQGDRLDKRTVTPEQHFTQ 457
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E +LVK++EELGIGRPSTYAS + +QDR YV L PE +GR+V+AFLS+
Sbjct: 458 PPPRYTEATLVKRMEELGIGRPSTYASVVTTIQDREYVRKDKNRLIPEDKGRLVTAFLSN 517
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF + Y FTAD+E +LD VSAG ++K +L +W FS+ L I +V + + +
Sbjct: 518 YFRKYVGYDFTADLEDQLDTVSAGNADYKEVLGRFWRDFSAAIAETADLRITEVLEKINE 577
Query: 951 TFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
LF + N+D R CP CG G L + +R G G FIGC+ +P C Y +G
Sbjct: 578 VLEPHLFPA--NEDGTDPRLCPNCGAGRLSMRTARSG-GAFIGCSNYPECRYT--RAFGP 632
Query: 1007 DDEEDTLQRNTNV-DEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSH 1064
EED ++ + E KL+G ++K+ G +G YVQ GE P R S+
Sbjct: 633 PGEED----DSGIPPEGKLLGED--GEDKIYAFKGRFGPYVQRGEVTEDNKKPPRQSIPK 686
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
+ + L AL+LL P +G HP+DG + + R G ++H
Sbjct: 687 DWPPEDVDLPQALKLLSLPREIGPHPEDGITVWANIGRYGPYIKH 731
>gi|330814164|ref|YP_004358403.1| DNA topoisomerase I [Candidatus Pelagibacter sp. IMCC9063]
gi|327487259|gb|AEA81664.1| DNA topoisomerase I [Candidatus Pelagibacter sp. IMCC9063]
Length = 863
Score = 571 bits (1471), Expect = e-159, Method: Compositional matrix adjust.
Identities = 324/792 (40%), Positives = 471/792 (59%), Gaps = 37/792 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG Y VL S+GHVRDL +++GSV +++F+MVWE+ +A+ H
Sbjct: 2 NLVIVESPAKAKTINKYLGSNYIVLASFGHVRDLPSKNGSVDTENNFNMVWEIDTASKKH 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A E +ILA+DPDREGEAIAWH+ +L+ ++ L V RVVF+EIT+ ++
Sbjct: 62 IKEIADAAEDCEKIILATDPDREGEAIAWHVRHILEDKNLLKGK-KVERVVFNEITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
++ R+++ LV AYLARRALDYL+GFNISP+LW KLPG +SAGRVQS AL +I +R
Sbjct: 121 VYGVENPRDLNIELVNAYLARRALDYLVGFNISPILWTKLPGSKSAGRVQSVALKIIVER 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ FKP+E+WT+ AV ++ +++ L + SK++ + S + A++
Sbjct: 181 EYEIELFKPEEFWTLNAVFKNSQNKEINS-----KLNIYDSKKVEKFSFKNKKAAENAVA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+IN F+V K+ + ++NP P+ TST+QQDA+ KL F A+ TM++AQ+LY+G+ +
Sbjct: 236 EINKNEFKV-KSIESKPFKRNPYAPFRTSTMQQDASRKLGFGASRTMQVAQRLYQGIDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
+G GLITYMRTDG IS +A + R+ I G + P E KK KNAQEAHEA
Sbjct: 294 EGETVGLITYMRTDGTDISLDAVADCRTFIKNEIGEKYLPSEARNYSGKKAKNAQEAHEA 353
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPTDI R P L LD+D ++LY LIW+RT++ QM+ A + +D N S++FR+
Sbjct: 354 IRPTDITRTPNSLKSKLDKDQMRLYELIWNRTVSSQMESAEFERTAIDFTNQSSSMIFRA 413
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S +F GF Y++V + KE + IL + + L + +V +QH T
Sbjct: 414 NGSIQKFDGFLKLYQEVKDEDDKEKE-----DSDEDNILPEVVKDEILKIDKVLNEQHFT 468
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RYSE SLVKKLEELGIGRPSTYAS + VL RNYV V ++ P RG+++++FL+
Sbjct: 469 QPPPRYSEASLVKKLEELGIGRPSTYASIISVLSTRNYVEVLNKKFTPTDRGKLITSFLN 528
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
F+ DY+FTA +E LD+++ G +W +L +W F+ + L + M+
Sbjct: 529 QLFTRYVDYNFTAGLEESLDDITTGKADWIEVLAKFWKEFNQNVLEVKELRTRAILDMMN 588
Query: 950 KTFGDSLFASLPNKD------RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
++ G+ +F +KD RSC CG G L K RFGA FIGC+++P C +
Sbjct: 589 ESLGEIIF----DKDNEGKIKRSCE-CG-GELSLKTGRFGA--FIGCSKYPDCKFTRPMS 640
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
E+D L EPK IG K ++LK G +G Y+Q+G D K S+
Sbjct: 641 RIKAAEQDYLA------EPKEIGKTEDDK-NIVLKKGRFGPYLQVGNDEKEM--KNVSIP 691
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN 1123
+D I L+ A L P LG +P++ I L R G V+ + A++
Sbjct: 692 KGISLDDIDLDKARFLASLPKVLGQYPENSMDITLNNGRYGPYVKCDKKSATLEAPEDIF 751
Query: 1124 DVTLEKALEFLS 1135
+ L KA+ ++
Sbjct: 752 SIGLNKAITMIA 763
>gi|393720521|ref|ZP_10340448.1| DNA topoisomerase I subunit omega [Sphingomonas echinoides ATCC
14820]
Length = 858
Score = 570 bits (1470), Expect = e-159, Method: Compositional matrix adjust.
Identities = 323/762 (42%), Positives = 438/762 (57%), Gaps = 53/762 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y VL SYGHVRDL + GSV P+D F+M WE + L
Sbjct: 3 LVIVESPAKAKTIEKYLGSDYRVLASYGHVRDLPPKDGSVDPEDGFAMEWENYADKAKQL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I A+ LILA+DPDREGEAI+WH+ E+L+ + AL ++ V RV F+ IT+A++
Sbjct: 63 KAITDLAKTADRLILATDPDREGEAISWHVQEVLRNRKALPKD--VQRVTFNAITKATVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+Q RE+D +L+ AY ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LI RE
Sbjct: 121 EAMQHPRELDTDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLIVSRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+PQEYW+V A ++ D F A L F+ K+L++LSIG AK +
Sbjct: 181 REIEAFRPQEYWSVAADMEH------DGTPFQARLVQFEGKKLDRLSIGEEGTAKRAKAA 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V + R P P+ TSTLQQ+A+ KL FSA +TM++AQ LYE
Sbjct: 235 VESGLFTVQTVEVKPATRNPPPPFTTSTLQQEASRKLGFSADHTMRIAQGLYED------ 288
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G ITYMRTDG+ + A R + +RY + + P++ PR Y K KNAQEAHEAIR
Sbjct: 289 ---GAITYMRTDGVQMDSSAISAARHAVADRYDASYVPDK-PRVYQTKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD + A D +LY LIW R +A QM A + + V++ + R++
Sbjct: 345 PTDFSKDKAGGG-----DHARLYDLIWKRALASQMASARLERTTVELADGTGDTALRATG 399
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGD-PLYLGEVELKQHHTQ 830
+ F G+ A YE E ++ + E L L+ GD P LG V +QH TQ
Sbjct: 400 QVMLFPGYLALYE----------EGSDDTQDEDAKRLPRLREGDAPAKLG-VTAEQHFTQ 448
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP R+SE SLVK+LEELGIGRPSTYAS +K L+DR YV V+ + E GR+V+AFL
Sbjct: 449 PPPRFSEASLVKRLEELGIGRPSTYASIIKTLKDRAYVRVEKNRFFAEESGRLVTAFLER 508
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + Y FTA +E ELD VS G +W+ +L +W F +V L+K
Sbjct: 509 FFEKYVGYDFTAGLEDELDEVSGGRAQWQAVLEAFWKDFKPRTAQVMEQKPSEVTAELDK 568
Query: 951 TFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK-TLYGDD 1007
LF + + R CP+C +G L + +FGA F+ C+ +P C Y + G +
Sbjct: 569 FLEPYLFPAKADGSDPRLCPLCHKGQLALRGGKFGA--FVACSNYPECKYTRRFGQPGGE 626
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKD 1067
E D P+ +G+ P S V KSG +G Y+Q+GE T R S KD
Sbjct: 627 GEADAT--------PETLGNDPESGLPVERKSGRFGPYIQIGEGET-----RKMASIPKD 673
Query: 1068 VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
+ + LE AL+LL P +G HP+ G+PI + R G ++H
Sbjct: 674 IGELDLEWALKLLSLPRTIGTHPETGEPITAAIGRYGPYLKH 715
>gi|399991831|ref|YP_006572071.1| DNA topoisomerase TopA [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
gi|398656386|gb|AFO90352.1| DNA topoisomerase TopA [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
Length = 900
Score = 570 bits (1470), Expect = e-159, Method: Compositional matrix adjust.
Identities = 340/810 (41%), Positives = 464/810 (57%), Gaps = 70/810 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL A++GSV PDDDF+M WEV + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPAKNGSVEPDDDFAMTWEVGADSRKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L ++ ++ ++ V+RV F+ IT+ ++
Sbjct: 63 KAIADALKDDNALILATDPDREGEAISWHLQEALTKRRSIKKDTAVSRVTFNAITKEAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMKNPRQVDLPLVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ FKPQEYW+V+A L F A LT +L++ ++ + T A+ Q
Sbjct: 183 MEIEAFKPQEYWSVKASLATPRGQ-----EFEARLTVLGGDKLDKYALANSTAAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S V + R P++TSTLQQ+A+ K A M AQ+LYE
Sbjct: 238 VASRALTVQSVEAKPASRNPSAPFMTSTLQQEASRKFGMGAKQCMNAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA +E R+ I RYG+ + P PR Y K KNAQEAHE IR
Sbjct: 291 --AGYITYMRTDGIDMAPEAVQEARAEIANRYGAEYVP-GSPRIYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT++ R L + ++D KLY LIW RT+ACQM+ A + + VDIG+ D +V R++
Sbjct: 348 PTEMGRDAKSLK-VSEDDQRKLYDLIWKRTLACQMEGARLERTTVDIGSNDGQVVLRATG 406
Query: 772 SRVEFLGFQAAYED--VDAGAIRYKENEENDRHEAFAILNSL-------KTG------DP 816
+ F GF YE+ D K + + E+ SL TG D
Sbjct: 407 QVMLFDGFLRVYEEGRDDVVDDDDKRLPQIMQGESLKFAASLAAQAEKADTGGAILSDDK 466
Query: 817 LYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILY 876
LG QHHTQPP R++E +LVK++EELGIGRPSTYAS + +QDR YV L+
Sbjct: 467 AVLG----LQHHTQPPPRFTEATLVKRMEELGIGRPSTYASVITTIQDREYVRKDKNRLF 522
Query: 877 PEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCA 936
PE +GR+V+ FL ++F Y FTA++E ELD+VSAG ++K LL +W FS+ +
Sbjct: 523 PEDKGRIVTIFLLNFFRTYVGYEFTANLEGELDDVSAGDRDYKDLLSRFWRDFSAAISET 582
Query: 937 QSLHIHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQ 992
L I +V +L+ L+ P +D R CP CG G L K SR G F+GC
Sbjct: 583 SDLRITEVLDVLDDALAPQLYP--PREDGVDPRVCPKCGAGQLHLKTSRTGG--FVGCGN 638
Query: 993 HPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDR 1052
+P CNY + + G+ E +++G +++ LKSG +G YVQ GE
Sbjct: 639 YPECNY-TRPISGEGAE----------GYERILGED--DGDEIHLKSGRFGPYVQRGEAT 685
Query: 1053 -TGYLPKRASV-SHIKDV------DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAG 1104
P R+S+ KD + +TLE A+ LL P +G HP+ G I L R G
Sbjct: 686 PENKKPPRSSLPKQGKDFLPGWGPNEVTLEQAVTLLTLPREIGQHPEGGA-IQANLGRFG 744
Query: 1105 FSVRHRRTIASVPKNMKPNDVTLEKALEFL 1134
+ H++ P KP V L++ L+
Sbjct: 745 PYIAHQK-----PDEEKPVYVNLKETLDVF 769
>gi|87199820|ref|YP_497077.1| DNA topoisomerase I [Novosphingobium aromaticivorans DSM 12444]
gi|87135501|gb|ABD26243.1| DNA topoisomerase I [Novosphingobium aromaticivorans DSM 12444]
Length = 859
Score = 570 bits (1469), Expect = e-159, Method: Compositional matrix adjust.
Identities = 329/763 (43%), Positives = 450/763 (58%), Gaps = 52/763 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+VL SYGHVRDL + GSVRPD+DF+M WE+ +
Sbjct: 3 LVIVESPAKAKTIEKYLGPGYKVLASYGHVRDLPVKDGSVRPDEDFAMDWELYGDKQARV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I A GA+ LILA+DPDREGEAI+WH+ E+L ++ L + V RV F+ IT+ ++
Sbjct: 63 KAISDAAKGADRLILATDPDREGEAISWHVRELLAKRRVLPKE--VERVTFNAITKQTVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R +D +L+ AYLARRALDYL GF +SP+LWRKLPG +SAGRVQS AL LI +RE
Sbjct: 121 DAMKKPRALDQDLIDAYLARRALDYLFGFTLSPVLWRKLPGAKSAGRVQSVALRLIVERE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+ QEYW+V A L+ + F A L F ++L++L++G A +
Sbjct: 181 REIEAFRAQEYWSVIARLEHAGTE------FAARLVKFDGQKLDKLTLGDEGAAMRAKGV 234
Query: 592 INSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +A F+V + + R+NP P+ TSTLQQ+AA KL FSA++TM++AQ LYE
Sbjct: 235 VEAATFRV-EEVETKPTRRNPYPPFTTSTLQQEAARKLGFSASHTMRVAQTLYE------ 287
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
AG ITYMRTDG+ + A R I +RY H+ PE+ PR Y K KNAQEAHEAI
Sbjct: 288 ---AGAITYMRTDGVQMDPSAISAARKAISDRYDGHYLPEK-PRHYETKAKNAQEAHEAI 343
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD + G DE +LY LI+ R MA QM A + + V + + R++
Sbjct: 344 RPTDFSK---DRYGSADE--ARLYDLIYKRAMASQMASANIERTTVTLRDGTGKHELRAT 398
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
V+F GF A YE+ G + ++ +E D ++L ++ +GD V+ QH TQ
Sbjct: 399 GQVVKFPGFLAVYEE---GRDQKQDGDEEDG----SLLPAMASGDTPAKRGVDATQHFTQ 451
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVK+LEELGIGRPSTYA+TL+VL+DRNYV + + E GR+++AFL
Sbjct: 452 PPPRYSEASLVKRLEELGIGRPSTYAATLQVLKDRNYVRTEKNRFFAEESGRLLTAFLER 511
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F Y FTA ME ELD+VS G EWK +L D+W F +V L++
Sbjct: 512 FFPRYVAYEFTAGMEEELDDVSGGRAEWKKVLADFWRDFKPKSDEVMEKKPSEVTAELDE 571
Query: 951 TFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
D LF P D R CP C EG L + R+GA F+ C+ +P C Y K
Sbjct: 572 FLSDYLFP--PRADGTDPRLCPKCEEGRLSLRGGRYGA--FVACSNYPECKYTRKFAQPG 627
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ D + +P+ + +V+ K+G +G Y+QLG+ G KRAS+ K
Sbjct: 628 GADGDGGEDGALGKDPE-------TGLEVVRKAGRFGPYIQLGD---GKEAKRASIP--K 675
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
D+ + LE AL+LL P +G HP+ G PI + R G + H
Sbjct: 676 DIGELDLEWALKLLSLPREVGVHPETGNPITASIGRYGPYLAH 718
>gi|402822518|ref|ZP_10871998.1| DNA topoisomerase I subunit omega [Sphingomonas sp. LH128]
gi|402263939|gb|EJU13822.1| DNA topoisomerase I subunit omega [Sphingomonas sp. LH128]
Length = 878
Score = 570 bits (1468), Expect = e-159, Method: Compositional matrix adjust.
Identities = 334/795 (42%), Positives = 462/795 (58%), Gaps = 66/795 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+VL SYGHVRDL + GSVRPD++F+M WE+ +
Sbjct: 3 LVIVESPAKAKTIEKYLGKDYKVLASYGHVRDLPPKDGSVRPDEEFAMDWELYGDKQRQV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I A A+ LILA+DPDREGEAI+WH+ E+L ++ AL ++ V RV F+ IT+ ++
Sbjct: 63 KAITDAAKTADRLILATDPDREGEAISWHVRELLAKRKALPKD--VQRVTFNAITKETVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ RE+D +L+ AYLARRALDYL GF +SP+LWRKLPG +SAGRVQS AL LI DRE
Sbjct: 121 KAMTQPRELDQDLIDAYLARRALDYLFGFTLSPVLWRKLPGAKSAGRVQSVALRLIVDRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F PQEYW+V A + +H D F A L F+ ++L++LS+G A +
Sbjct: 181 REIEAFTPQEYWSVAAQM----AH--DGTDFTAKLVTFEGQKLDRLSLGEEGIAMRAKTA 234
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ F+V + + R+NP P + TSTLQQ+AA KL FSA+ TM++AQ LYE
Sbjct: 235 VEQGAFKV-EGVETKPHRRNPQPPFTTSTLQQEAARKLGFSASQTMRVAQTLYE------ 287
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
AG ITYMRTDG+ + A R+ I ER+ H PE+ PR Y K KNAQEAHEAI
Sbjct: 288 ---AGAITYMRTDGVQMDPSAISAARAAIAERFSGHFVPEK-PRHYETKAKNAQEAHEAI 343
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT+ + SG D +LY LI+ R MA QM A + + V + + R++
Sbjct: 344 RPTEFTK-DRFGSG----DEARLYDLIFKRAMASQMASAQLERTTVTLRDGTGRNELRAT 398
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
+ V+F GF A YE+ ++N+ +D EA +L +K GD +V +QH TQ
Sbjct: 399 GTVVKFPGFLAVYEEG-------RDNKADDDDEA-GLLPFMKAGDMPAKKDVTAEQHFTQ 450
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP R+SE SLVK+LEELGIGRPSTYA+T++V++DR YV + + E GR++++FL
Sbjct: 451 PPPRFSEASLVKRLEELGIGRPSTYAATIQVIKDRAYVRTEKNRFFAEETGRLLTSFLER 510
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F Y FTA ME ELD+VS G EWK LL +W F +V + L++
Sbjct: 511 FFPRYVAYEFTAGMEDELDDVSGGRQEWKALLEAFWRDFKPKSDEVMEKKPSEVTEALDE 570
Query: 951 TFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK----- 1001
D LF P D R CP CGEG L + R+GA F+ C+ +P C + K
Sbjct: 571 FLSDYLFP--PKADGTDPRVCPKCGEGRLSLRGGRYGA--FVACSNYPECKFTRKFAQPG 626
Query: 1002 -TLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRA 1060
G DDE +G P + +++ ++G +G Y+QLGE G KRA
Sbjct: 627 GNAEGGDDEG--------------LGKDPETGMEIMRRTGRFGPYIQLGE---GKEAKRA 669
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
S+ KD+D +TLE ++LL P +G HP+ G+ I + R G + H A +
Sbjct: 670 SIP--KDIDELTLEWGIKLLSLPRTVGPHPETGKDITASIGRYGPYLAHDGKYARLRSTA 727
Query: 1121 KPNDVTLEKALEFLS 1135
+ D + A+ L+
Sbjct: 728 EVFDTGMNAAVSMLA 742
>gi|313200024|ref|YP_004038682.1| DNA topoisomerase i [Methylovorus sp. MP688]
gi|312439340|gb|ADQ83446.1| DNA topoisomerase I [Methylovorus sp. MP688]
Length = 858
Score = 570 bits (1468), Expect = e-159, Method: Compositional matrix adjust.
Identities = 321/794 (40%), Positives = 471/794 (59%), Gaps = 61/794 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+++VES +KAK ++ YLG +EVL SYGHVRDL ++G+V P++D++M +EV H+
Sbjct: 4 LLIVESPSKAKTLKKYLGSDFEVLASYGHVRDLIPKNGAVDPENDYAMKYEVIDRNSKHV 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ ++ + LA+DPDREGEAI+WHI E+L+ + L ++ + RVVFHEIT+ +++
Sbjct: 64 DAIAKAVRASDAIYLATDPDREGEAISWHIAEILKDK-KLIKDKLIKRVVFHEITKTAVQ 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ + R+I LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +RE
Sbjct: 123 NAIASPRDISMPLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
+EI+ FK QEYWT+ + KK H D A L ++ Q ++ + T+ +I K
Sbjct: 183 LEIEAFKSQEYWTIH-LESKKHQHLFD-----ARLVQLDGSKVEQFTVTNETQQAEIVGK 236
Query: 592 I---NSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ ++ V + K+ R P+ TSTLQQ+A KL F+ + M++AQ+LYEG+ +
Sbjct: 237 LLLASAGKTTVSRVEKKQKNRSPAAPFTTSTLQQEAVRKLGFTTSRAMRIAQQLYEGIDV 296
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
+GT GLITYMRTD ++ EA +IR I + + P+ P Y K KNAQEAHE
Sbjct: 297 GNGTV-GLITYMRTDSFSMAAEAVMQIRDYIKRNFEPDYLPK-SPIMYKTKAKNAQEAHE 354
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPTDI R P L L + +LY +IW R +ACQM PA + VD+ ++ +FR
Sbjct: 355 AIRPTDITRTPQSLKNYLTPEQFRLYEMIWKRALACQMAPAKFDAVSVDLAVGSDANLFR 414
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ + F GF A Y E +++ EA A L L+TG+ L + ++ QH
Sbjct: 415 ATGQTMIFPGFIAVY----------MEGQDDAEEEAEAKLPHLETGEVLDVNKIFGDQHF 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SLVK LEE GIGRPSTYAS + LQDR YV + + P GR+V+ FL
Sbjct: 465 TEPPPRYSEASLVKVLEEYGIGRPSTYASIISTLQDREYVLLDKKRFTPTDVGRVVNKFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F+ DY FTA++E ELD+++ G EW +L D+W F+ +++L
Sbjct: 525 TEHFTRYVDYGFTANLENELDDIAEGEREWVPVLDDFWQGFN--------------KQLL 570
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
EK D + + +CP CG+ L ++ RFG FIGC+ +P C+YI
Sbjct: 571 EKANIDRAEITQEDIGEACPKCGK-PLHSRLGRFGK--FIGCSGYPECDYI--------- 618
Query: 1009 EEDTLQRNTNVD-----EPKLIGHHPASKEKVLLKSGPYGFYVQLG--EDRTGYLPKRAS 1061
RNT + EP ++GH PAS + +LL +GPYG Y+QLG E+ + PKR S
Sbjct: 619 ------RNTGSNAAASSEPVVMGHDPASDKDILLLNGPYGPYLQLGLPEEGSKKKPKRVS 672
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + ++ LE A++L+ P +LG HP+ G+ I+ + R G V H S+P++
Sbjct: 673 IPKEIPLANVDLEVAMKLIALPRDLGQHPETGKKIVANIGRFGPYVNHDGKFKSIPRSDS 732
Query: 1122 PNDVTLEKALEFLS 1135
D+ L +A+E L+
Sbjct: 733 VFDIDLPRAVELLA 746
>gi|294011702|ref|YP_003545162.1| DNA topoisomerase I [Sphingobium japonicum UT26S]
gi|292675032|dbj|BAI96550.1| DNA topoisomerase I [Sphingobium japonicum UT26S]
Length = 862
Score = 570 bits (1468), Expect = e-159, Method: Compositional matrix adjust.
Identities = 322/770 (41%), Positives = 450/770 (58%), Gaps = 54/770 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG + VL SYGH+RDL + GSV PD+ F+M WE L
Sbjct: 3 LVIVESPAKAKTIEKYLGGDFHVLASYGHIRDLPPKDGSVDPDNGFAMSWENYGDKGKQL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I A LILA+DPDREGEAI+WH+ E+L+ + AL + V RV F+ IT+ ++
Sbjct: 63 KAIADEAKKATRLILATDPDREGEAISWHVQEVLRAKKALPQK--VDRVTFNAITKQAVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R +D +L+ AY ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ +RE
Sbjct: 121 EAMAQPRALDEDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVERE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F PQEYW+V A +++ F A L ++ +++ +L+IG +A +
Sbjct: 181 REIESFVPQEYWSVAAEMEQAGQ------GFTARLVKWRGEKIERLTIGREGDAMAAKAD 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + F V K + + R P P+ TSTLQQ+AA KL FSA++TM++AQ+LYE
Sbjct: 235 VEAGRFTVEKVETKPVSRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQQLYED------ 288
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G ITYMRTDG+ + A R I ERY + PE+ PR+Y K KNAQEAHEAIR
Sbjct: 289 ---GAITYMRTDGVQMDGSAISAARKAIAERYDGGYLPEK-PRQYQTKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+ R + SG D +LY LI+ R +A QM A + + VD+ + R++
Sbjct: 345 PTEFYR-DKVGSG----DHARLYDLIFKRALASQMASARLERTTVDLVDGTGQHGLRATG 399
Query: 772 SRVEFLGFQAAYE----DVDAGAIRYK--ENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
V F GF A YE D + G+ ++ + E++D +L + GD +V +
Sbjct: 400 QVVIFPGFLALYEEGRDDPERGSGKHASADGEDDDSK----LLPRMAAGDAPAKRKVTAE 455
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH TQPP RYSE SLVKKLEELGIGRPSTYASTL+VL+DR+YV ++ + E GR+V+
Sbjct: 456 QHFTQPPPRYSEASLVKKLEELGIGRPSTYASTLQVLKDRDYVRIEKNRFFAEESGRLVT 515
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
AFL +F Y FTA +E ELD++S G +W+ +L +W F +
Sbjct: 516 AFLERFFERYVSYDFTAGLEEELDDISGGRAQWQAVLEAFWRDFKPKTAEVMEQKPSDIT 575
Query: 946 KMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK 1001
L+K LF P D R+CP+CG+G L + RFGA FI C+ +P C Y K
Sbjct: 576 AELDKFLEPMLFP--PKADGSNPRACPMCGDGQLSLRGGRFGA--FIACSNYPECKYTRK 631
Query: 1002 --TLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKR 1059
GD D EDT P+++G HP + + ++ KSG +G Y+++GE G KR
Sbjct: 632 FGQPGGDKDGEDT--------GPEVLGQHPETGQDIVRKSGRFGPYIEMGE---GKEAKR 680
Query: 1060 ASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
S+ +TL+ A++LL P +G HP+ G+PI+ + R G + H
Sbjct: 681 GSIPKDLPDGELTLDWAVKLLSLPREIGPHPETGKPIVANIGRFGPYLLH 730
>gi|393771543|ref|ZP_10360014.1| DNA topoisomerase I [Novosphingobium sp. Rr 2-17]
gi|392723030|gb|EIZ80424.1| DNA topoisomerase I [Novosphingobium sp. Rr 2-17]
Length = 871
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 327/764 (42%), Positives = 453/764 (59%), Gaps = 56/764 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+VL SYGHVRDL + GSVRPD+DF+M WE+ +
Sbjct: 3 LVIVESPAKAKTIEKYLGKDYKVLASYGHVRDLPPKDGSVRPDEDFAMDWELYGDKQRQV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
++I A A+ LILA+DPDREGEAI+WH+ E+L ++ AL ++ V RV F+ IT+ ++
Sbjct: 63 RAITDAAKDADRLILATDPDREGEAISWHVRELLAKRKALPKD--VQRVTFNAITKETVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ RE+D +L+ AYLARRALDYL GF +SP+LWRKLPG +SAGRVQS AL L+ DRE
Sbjct: 121 KAMTQPRELDQDLIDAYLARRALDYLFGFTLSPVLWRKLPGAKSAGRVQSVALRLVVDRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+ QEYW+V A++ +H D F A L +F+ K+L +LS+G A +
Sbjct: 181 REIEAFRAQEYWSVAALM----AH--DGTDFTARLVNFEGKKLERLSLGDEGIALRAKAA 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + F+V + + R P+ TSTLQQ+A+ KL FSA+ TM++AQ LYE
Sbjct: 235 VEAGAFRVEQVETKPHRRNPQPPFTTSTLQQEASRKLGFSASQTMRVAQTLYE------- 287
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ + A R+ I ERY H+ PE+ PR Y K KNAQEAHEAIR
Sbjct: 288 --AGAITYMRTDGVQMDPSAISAARAAITERYSGHYLPEK-PRHYETKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+ + SG D +LY LI+ R MA QM A + + V + + R+S
Sbjct: 345 PTEFTK-DRYGSG----DEARLYDLIFKRAMASQMASAQLERTTVTLRDGTGQTELRASG 399
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V+F GF A YE+ + ++D + +L +K GD EV +QH TQP
Sbjct: 400 QVVKFPGFLAVYEE--------GRDNKSDDDDDGGLLPFMKAGDMPAKKEVTAEQHFTQP 451
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE S+VK+LEELGIGRPSTYA+T++V++DRNYV ++ + E GR++++FL +
Sbjct: 452 PPRYSEASIVKRLEELGIGRPSTYAATIQVIRDRNYVRMEKNRFFAEESGRLLTSFLERF 511
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
FS Y FTA ME ELDNVS G EWK LL D+W F +V + L++
Sbjct: 512 FSRYVAYEFTASMEDELDNVSGGRQEWKTLLADFWRDFKPKSDEVMEKKPSEVTEALDEF 571
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
GD LF P D R CP C +G L + R+GA F+ C+ +P C + K
Sbjct: 572 LGDYLFP--PKADGSDARLCPKCQQGRLSLRGGRYGA--FVACSNYPECKFTRK------ 621
Query: 1008 DEEDTLQRNTNVD--EPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
Q D E + +G P + +++ ++G +G Y+QLGE G KRAS+
Sbjct: 622 ----FAQPGGEADGGEDEGLGKDPETGLEIVRRTGRFGPYIQLGE---GKEAKRASIP-- 672
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
KD++ +TLE ++LL P ++G HP+ G I + R G + H
Sbjct: 673 KDIEELTLEWGIKLLSLPRSIGAHPETGNEITASIGRYGPYLAH 716
>gi|381201708|ref|ZP_09908833.1| DNA topoisomerase I subunit omega [Sphingobium yanoikuyae XLDN2-5]
gi|427407568|ref|ZP_18897770.1| DNA topoisomerase 1 [Sphingobium yanoikuyae ATCC 51230]
gi|425714072|gb|EKU77083.1| DNA topoisomerase 1 [Sphingobium yanoikuyae ATCC 51230]
Length = 860
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 318/763 (41%), Positives = 444/763 (58%), Gaps = 53/763 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG + VL SYGH+RDL + GSV PD+ F+M WE L
Sbjct: 3 LVIVESPAKAKTIEKYLGGDFHVLASYGHIRDLPPKDGSVDPDNGFAMSWENYGDKGKQL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I A LILA+DPDREGEAI+WH+ E+L+ + AL + TV RV F+ IT+A++
Sbjct: 63 KAIADEAKKATRLILATDPDREGEAISWHVQEVLRAKKALPQ--TVDRVTFNAITKAAVL 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R +D +L+ AY ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ +RE
Sbjct: 121 DAMAKPRALDEDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVERE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F PQEYW++ A +++ F A L ++ +++++L+IG +A +
Sbjct: 181 REIESFSPQEYWSISAEMEQGGQ------GFTARLVRWKGEKIDRLTIGKEGDAMAAKAD 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + F V K + + R P P+ TSTLQQ+AA KL FSA++TM++AQ+LYE
Sbjct: 235 VEAGRFTVDKVETKPLTRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQQLYED------ 288
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G ITYMRTDG+ + A R I ERY + PE+ PR+Y K KNAQEAHEAIR
Sbjct: 289 ---GAITYMRTDGVQMDGSAISAARKAIAERYDGGYLPEK-PRQYQTKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+ R + D +LY LI+ R +A QM A + + +D+ + S R++
Sbjct: 345 PTEFHR-----DKVGGGDHARLYDLIFKRALASQMASARLERTTIDMVDGSGSHTLRATG 399
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F GF A YE+ +++ E+D + +L L GD +V +QH TQP
Sbjct: 400 QVVIFPGFLALYEEG-------RDDAEDDDSK---LLPRLSEGDAPAKKKVSAEQHFTQP 449
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYASTL+VL+DR+YV V+ + E GR+V+AFL +
Sbjct: 450 PPRYSEASLVKKLEELGIGRPSTYASTLQVLKDRDYVRVEKNRFFAEESGRLVTAFLERF 509
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F Y FTA +E ELD +S G +W+ +L +W F + L+K
Sbjct: 510 FERYVSYDFTAGLEDELDEISGGRAQWQEVLEAFWKDFKPKTAEIMEQKPSDITAELDKF 569
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK-TLYGD 1006
LF P D R+CP+C +G L + RFGA FI C+ +P C Y K G
Sbjct: 570 LEPMLFP--PKADGSNPRACPLCADGQLSLRGGRFGA--FIACSNYPECKYTRKFGQPGG 625
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
D DT P+++G HP + + ++ KSG +G Y+++GE G KR S+
Sbjct: 626 SDGADT--------GPEILGQHPETGQDIVKKSGRFGPYIEMGE---GKEAKRGSIPKDL 674
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
+TL+ A++LL P +G HP+ G PI+ + R G + H
Sbjct: 675 PDGEMTLDWAIKLLSLPREVGLHPETGLPIVANIGRFGPYLLH 717
>gi|126737263|ref|ZP_01752998.1| DNA topoisomerase I [Roseobacter sp. SK209-2-6]
gi|126721848|gb|EBA18551.1| DNA topoisomerase I [Roseobacter sp. SK209-2-6]
Length = 894
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 336/808 (41%), Positives = 463/808 (57%), Gaps = 69/808 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV +++F M W+V A+ H+
Sbjct: 3 VVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPPKDGSVDTENEFEMTWQVAEASKKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
++I AL LILA+DPDREGEAI+WH+ E L ++ ++ ++ V+RV F+ IT+ ++
Sbjct: 63 RAIADALKEDNALILATDPDREGEAISWHLQEALTKRRSIKKDTPVSRVTFNAITKEAVL 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 DAMANPRQVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F PQEYW+V+A L F A LT +L++ S+ + T A+ Q
Sbjct: 183 MEIEAFNPQEYWSVKASLATPRGQ-----EFEARLTILGGDKLDKYSLANSTAAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
++S V + R P++TSTLQQ+A+ K A M AQ+LYE
Sbjct: 238 VSSRALSVKSVEAKPAARNPSAPFMTSTLQQEASRKFGMGAKQCMNAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AGLITYMRTDG+ ++ EA + R I RYG+ + P + PR Y K KNAQEAHE IR
Sbjct: 291 --AGLITYMRTDGIDMAPEAVQAAREEIGTRYGAEYVP-DSPRIYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ R L + ++D KLY LIW RT+ACQM A + + VD+G+ D + R++
Sbjct: 348 PTDMSRDAKSLK-VSEDDQRKLYDLIWKRTLACQMAGARLERTTVDLGSDDGQVGLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRH-------EAFAILNSLK--------TGDP 816
+ F GF YE+ + +E+D+ EA +SL TG
Sbjct: 407 QVMLFDGFMRVYEEGRDDVV-----DEDDKRLPQIMQGEALKFASSLAAQAEKAGPTGSC 461
Query: 817 LYLGEVELK-QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRIL 875
L + L QHHTQPP R++E +LVK++EELGIGRPSTYAS + +QDR YV L
Sbjct: 462 LSEDKAVLGLQHHTQPPPRFTEATLVKRMEELGIGRPSTYASVITTIQDREYVRKDKNRL 521
Query: 876 YPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTC 935
+PE +GR+V+ FL ++F Y FTA++E ELD+VSAG ++K LL +W FS+ +
Sbjct: 522 FPEDKGRIVTIFLLNFFRTYVGYEFTANLEGELDDVSAGSRDYKELLGRFWRDFSAAISE 581
Query: 936 AQSLHIHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCN 991
L I +V +L+ L+ P +D R CP CG G L K SR G F+GC
Sbjct: 582 TSDLRITEVLDVLDDALAPQLYP--PREDGSDPRVCPKCGAGQLHLKTSRTGG--FVGCG 637
Query: 992 QHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGED 1051
+P C Y + + G+ E E KL+G ++++ LK G YG YVQ GE
Sbjct: 638 NYPECTY-TRPIAGEGAE----------GEEKLLGSD--GEDEIWLKDGRYGPYVQRGEA 684
Query: 1052 R-TGYLPKRASVSHIKD----VDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFS 1106
PKR+S+ + + TLE AL+LL P N+G+HP+ G+ I L R G
Sbjct: 685 TPENKKPKRSSLPQTRHGGWPKEETTLERALQLLSLPRNVGDHPEGGR-ISANLGRFGPY 743
Query: 1107 VRHRRTIASVPKNMKPNDVTLEKALEFL 1134
+ H+ +P+ KP V L++ E
Sbjct: 744 IMHK-----LPEAEKPTYVNLKQWHEMF 766
>gi|302877263|ref|YP_003845827.1| DNA topoisomerase I [Gallionella capsiferriformans ES-2]
gi|302580052|gb|ADL54063.1| DNA topoisomerase I [Gallionella capsiferriformans ES-2]
Length = 872
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 336/790 (42%), Positives = 470/790 (59%), Gaps = 56/790 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++++VES KAK ++ YLG+ YEVL SYGHVRDL ++G+V ++ F+M +E + H
Sbjct: 4 NLLIVESPAKAKTLKKYLGNDYEVLASYGHVRDLVPKTGAVDTENGFAMNYETIARNSKH 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +I A + AEN++LA DPDREGEAIAWHI E+L+ + + + RVVF+EIT++++
Sbjct: 64 MDAIAKAAASAENILLAPDPDREGEAIAWHIAELLKAKRGF-KGKNMKRVVFYEITQSAV 122
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A+ REI LV A ARRALDYL+GFN+SPLLWRK+ SAGRVQS AL LI +R
Sbjct: 123 QAAVANPREIAMPLVNAQQARRALDYLVGFNLSPLLWRKIRPGLSAGRVQSPALRLIVER 182
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E++I+ FK QEYW+V LD +++H SF A L +Q K+L QLSI S +E I
Sbjct: 183 ELQIEAFKTQEYWSVH--LDTQKNHQ----SFSARLIQYQGKKLEQLSIASQSEYDAIYA 236
Query: 591 KINSANF--QVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
K+N A +V+K K++ R P+ TSTLQQ+A KL SA TM+ AQ LYEGV +
Sbjct: 237 KLNDAKLPPKVVKVEKKAKQRYAAAPFTTSTLQQEAVRKLGMSAERTMRTAQSLYEGVDI 296
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G GLI+YMRTD + +++EA EIR+ I + + S + P P Y K KNAQE+HE
Sbjct: 297 -GGQTVGLISYMRTDSVSLANEAVAEIRNYIGDHFSSEYLPGTPP-TYKSKTKNAQESHE 354
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT I R P L L D +LY +IW RT+ACQM A + DI + +FR
Sbjct: 355 AIRPTSIVRTPDSLQDRLTVDQARLYEMIWKRTLACQMTAARYDTVSADIRLGGDDTLFR 414
Query: 769 SSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ + F GF + Y EDVD E E+ R L L GD L + ++ +QH
Sbjct: 415 ANGQVLVFPGFISVYMEDVDDA-----EEEQGSR------LPPLVEGDILPVDKLFGEQH 463
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP R++E SLVK LEE GIGRPSTYA+ + LQ R Y + + P GR+V+ F
Sbjct: 464 FTQPPPRFTEASLVKSLEEYGIGRPSTYATIISTLQTREYAILDKKRFMPTDVGRVVTRF 523
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L+ +F+ DY+FTA +E ELD VS G +W G++ ++W FS+ + +I + +++
Sbjct: 524 LTDHFTRYVDYNFTASLEDELDEVSDGKRDWIGVMDEFWKGFSALIK--EKTNIERPQEL 581
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
L D +CP CG+ L K+SR+G+ FI C +P C Y +++ G+
Sbjct: 582 L---------------DEACPECGK-PLAKKLSRYGS--FISCTNYPECKY-KRSVGGET 622
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTG--YLPKRASVSHI 1065
EE ++ +G HP S + VLL GPYG YVQLGE G PKR S
Sbjct: 623 QEEVRVE----------LGVHPESAQAVLLLRGPYGHYVQLGEVIEGEKAKPKRVSWPKE 672
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
VD LE AL+LL P +LG HP+ + +++ + R G + H S+P+ DV
Sbjct: 673 MAVDQADLESALKLLSLPKDLGLHPETNKKVIVNIGRFGPYIGHDGKFKSIPRTDSIFDV 732
Query: 1126 TLEKALEFLS 1135
TL++A+E L+
Sbjct: 733 TLDRAVELLA 742
>gi|254449750|ref|ZP_05063187.1| DNA topoisomerase I [Octadecabacter arcticus 238]
gi|198264156|gb|EDY88426.1| DNA topoisomerase I [Octadecabacter arcticus 238]
Length = 889
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 316/763 (41%), Positives = 454/763 (59%), Gaps = 38/763 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV PD+DF M+WE+ S + H+
Sbjct: 3 VVVVESPAKAKTINKYLGPGYTVLASYGHVRDLPPKDGSVDPDNDFDMLWEIASDSKKHI 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL+ LILA+DPDREGEAI+WH+ E L+++ ++ ++ V+RVVF+ IT+ ++
Sbjct: 63 KAIADALADDNELILATDPDREGEAISWHLEETLRKRKSIKKDTPVSRVVFNAITKTAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D LV+AYLARRALDYL+GF +SP+LWR+LPG +SAGRVQS +L +I +RE
Sbjct: 123 EAMKNPRQVDVPLVEAYLARRALDYLVGFKLSPVLWRRLPGAKSAGRVQSVSLRIIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F +EYW+V+A L + +++T LT K+L++ + + T+A+ EQ
Sbjct: 183 MEIEAFNNREYWSVKAQLSTPRNQAVET-----RLTVLAGKKLDKFDLENATQAELAEQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S + V + + R P++TSTLQQ+A+ K F A TM AQ+LYE
Sbjct: 238 VKSRDLTVKRVEAKPANRNPSAPFMTSTLQQEASRKFGFGARMTMNAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AGLITYMRTDG+ ++ EA R I ++G + P+ PR Y K KNAQEAHE IR
Sbjct: 291 --AGLITYMRTDGIDMAPEAITAARDAIAAKFGKDYVPDT-PRIYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ L A + + D D KLY LI+ RT++ QM A + + VD G+AD + R++
Sbjct: 348 PTDL-MLDAETAKIADPDQRKLYDLIYKRTVSSQMAAARMERTSVDFGSADGQVELRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F GF A YE+ ++++ D L + G+ + V +QH TQP
Sbjct: 407 QVVLFDGFLAIYEE-------GRDDDAADDDGDDKRLPQMAEGEKMAKSSVVAEQHSTQP 459
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVK++EELGIGRPSTYAS + +QDR YV + L PE +GR+V+AFL+++
Sbjct: 460 PPRYTEATLVKRMEELGIGRPSTYASIVTTIQDREYVRKEKNRLIPEDKGRLVTAFLTNF 519
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + Y +TA +E ELD+VSAG ++K +L D+W F A + I QV + +
Sbjct: 520 FRKYVGYDYTASLEEELDHVSAGEADYKKVLSDFWGDFKITIDEAMDMSITQVLDKINEV 579
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
+F PN++ R CP C G L + +R G G FIGC+ +P C Y +G
Sbjct: 580 LAPHIFP--PNEEGTDPRLCPNCNVGRLSMRTARSG-GAFIGCSNYPECKYT--RAFGPP 634
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHIK 1066
++D + E K +G +K+ + G +G Y Q GE P R SV
Sbjct: 635 GQDDA---SGIPPEGKELGMD--DGDKIWIHKGRFGPYAQRGEVTEENKKPNRQSVPKEW 689
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
+ +TLE A++LL P +G HP+DG + + R G ++H
Sbjct: 690 PPEDVTLETAVKLLSLPRLIGTHPEDGVNVFANIGRYGPYIKH 732
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 14/134 (10%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+LIG HP V G YG Y++ E + A++ + DV ++ + A++LL
Sbjct: 706 PRLIGTHPEDGVNVFANIGRYGPYIKHAESTSERGGTNANLEGLDDVFTVGMNHAVQLLA 765
Query: 1082 YPV--------------NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
V +LG+HP +G PI + + G V+ + A++PK+ P +T+
Sbjct: 766 EKVASRGNRGGAAKTLKSLGDHPDEGGPIDIMEGKYGPYVKWEKVNATLPKDSDPEALTI 825
Query: 1128 EKALEFLSGKDVRR 1141
++A++ ++ K ++
Sbjct: 826 QQAVDLITEKQAKK 839
>gi|334344421|ref|YP_004552973.1| DNA topoisomerase I [Sphingobium chlorophenolicum L-1]
gi|334101043|gb|AEG48467.1| DNA topoisomerase I [Sphingobium chlorophenolicum L-1]
Length = 850
Score = 567 bits (1461), Expect = e-158, Method: Compositional matrix adjust.
Identities = 319/764 (41%), Positives = 447/764 (58%), Gaps = 54/764 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG + VL SYGH+RDL A+ GSV PD F+M WE L
Sbjct: 3 LVIVESPAKAKTIEKYLGGDFHVLASYGHIRDLPAKDGSVDPDAGFAMQWENYGDKGKQL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I A LILA+DPDREGEAI+WH+ E+L+ + AL + V RV F+ IT+ ++
Sbjct: 63 KAIADEAKKATRLILATDPDREGEAISWHVQEVLRAKKALPQK--VDRVTFNAITKQAVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R +D +L+ AY ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ +RE
Sbjct: 121 EAMAQPRALDEDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVERE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F PQEYW+V A +++ F A L ++ +++ +L+IG +A +
Sbjct: 181 REIESFVPQEYWSVAAEMEQGGQ------GFTARLVRWRGEKIERLTIGREGDAMAAKAD 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + F V K + + R P P+ TSTLQQ+AA KL FSA++TM++AQ+LYE
Sbjct: 235 VEAGRFTVEKVETKPVSRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQQLYED------ 288
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G ITYMRTDG+ + A R I ERY + PE+ PR+Y K KNAQEAHEAIR
Sbjct: 289 ---GAITYMRTDGVQMDGSAISAARKAIAERYDGGYLPEK-PRQYQTKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+ R + SG D +LY LI+ R +A QM A + + +D+ + R++
Sbjct: 345 PTEFYR-DKVGSG----DHARLYDLIFKRALASQMASARLERTTIDLVDGTGQHGLRATG 399
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F GF A YE+ +++ E+D + +L + GD +V +QH TQP
Sbjct: 400 QVVIFPGFLALYEEG-------RDDTEDDDSK---LLPRMAEGDAPAKKKVTAEQHFTQP 449
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYASTL+VL+DR+YV ++ + E GR+V+AFL +
Sbjct: 450 PPRYSEASLVKKLEELGIGRPSTYASTLQVLKDRDYVRIEKNRFFAEESGRLVTAFLERF 509
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F Y FTA +E ELD++S G +W+ +L +W F T + L+K
Sbjct: 510 FERYVSYDFTAGLEEELDDISGGRAQWQAVLEAFWRDFKPKTTEVMEQKPSDITAELDKF 569
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK--TLYG 1005
LF P D R+CP+CG+G L + RFGA FI C+ +P C Y K G
Sbjct: 570 LEPMLFP--PKADGSNPRACPMCGDGQLSLRGGRFGA--FIACSNYPECKYTRKFGQPGG 625
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
D ED+ P+++G HP + + ++ KSG +G Y+++GE G KR S+
Sbjct: 626 KDGAEDS--------GPEVLGKHPETGQDIVRKSGRFGPYIEMGE---GKEAKRGSIPKD 674
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
+TL+ A++LL P +G HP+ G+PI+ + R G + H
Sbjct: 675 LPDGEMTLDWAVKLLSLPREIGLHPETGKPIVANIGRFGPYLLH 718
>gi|365879902|ref|ZP_09419299.1| DNA topoisomerase I [Bradyrhizobium sp. ORS 375]
gi|365292091|emb|CCD91830.1| DNA topoisomerase I [Bradyrhizobium sp. ORS 375]
Length = 866
Score = 567 bits (1460), Expect = e-158, Method: Compositional matrix adjust.
Identities = 310/748 (41%), Positives = 452/748 (60%), Gaps = 42/748 (5%)
Query: 399 MVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVA 458
M+WEV A + L I +L GA+ LILA+DPDREGEAI+WH++E+++++ AL + +
Sbjct: 1 MIWEVDPKAASRLNDIAKSLKGADRLILATDPDREGEAISWHVLEVMKEKRALKDQ-KIE 59
Query: 459 RVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGR 518
RVVF+ IT+ ++ A++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGR
Sbjct: 60 RVVFNAITKQAVSEAMKNPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGR 119
Query: 519 VQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLS 578
VQS AL L+CDRE+EI++F P+EYW++ A L DTF A L K++ +L
Sbjct: 120 VQSVALRLVCDRELEIEKFVPREYWSLIATLATPRG---DTFE--ARLVGADGKKIQRLD 174
Query: 579 IGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKL 638
IG+ EA+D + +N+A + V+ + R P+ TSTLQQ+A+ KL F+ +TM++
Sbjct: 175 IGTGAEAEDFKNALNAATYSVLTVDAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRI 234
Query: 639 AQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFK 698
AQ+LYEG+ + G GLITYMRTDG+ I+ EA + R +I E YG+ + P+ PR+Y
Sbjct: 235 AQRLYEGIDI-GGETTGLITYMRTDGVQIAPEAITQARKVIGEIYGNKYVPDS-PRQYQT 292
Query: 699 KVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI 758
K KNAQEAHEAIRPTD+ R PA L LD+D KLY LIW+RT+A QM+ A + + VDI
Sbjct: 293 KAKNAQEAHEAIRPTDLSRKPAELRKRLDDDQAKLYELIWTRTIASQMESAELERTTVDI 352
Query: 759 GN--ADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDP 816
++ R++ ++F GF A Y+ E +++ E L + G+
Sbjct: 353 TAKAGGRTLELRATGQVIKFDGFLALYQ----------EGRDDEEDEDSRRLPQMSQGEA 402
Query: 817 LYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILY 876
L + + QH T+PP R+SE SLVK++EELGIGRPSTYAS L VL+ R YV ++ + L+
Sbjct: 403 LKRQNLAVTQHFTEPPPRFSEASLVKRMEELGIGRPSTYASILDVLKARGYVKLEKKRLH 462
Query: 877 PEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCA 936
E +GR+V AFL ++F +Y FTAD+E +LD +S W+ +L D+W+ F
Sbjct: 463 GEDKGRVVIAFLENFFRRYVEYDFTADLEEQLDRISNNEIAWQQVLKDFWTGFIGAVDDI 522
Query: 937 QSLHIHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQ 992
+ L + QV L++ G ++ P +D R CP CG G L K +FGA F+GC+
Sbjct: 523 KDLRVAQVLDALDEMLGPHIYP--PREDGGDVRQCPTCGTGRLNLKAGKFGA--FVGCSN 578
Query: 993 HPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDR 1052
+P C Y L ++ +++G P S +V +K+G +G Y+QLGE +
Sbjct: 579 YPECRYTR-----------PLAADSEAAADRMLGQDPDSGLEVAVKAGRFGPYIQLGEQK 627
Query: 1053 T---GYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
G PKRA + + L+ AL+LL P +G HP+ G PI L R G V+H
Sbjct: 628 DYAEGEKPKRAGIPKGTQPSDVDLDLALKLLSLPREIGKHPETGLPITAGLGRFGPFVKH 687
Query: 1110 RRTIASVPKNMKPNDVTLEKALEFLSGK 1137
+T AS+ + D+ L +A+ ++ K
Sbjct: 688 DKTYASLEAGDEVFDIGLNRAVTLIAEK 715
>gi|365886727|ref|ZP_09425631.1| DNA topoisomerase I [Bradyrhizobium sp. STM 3809]
gi|365337723|emb|CCD98162.1| DNA topoisomerase I [Bradyrhizobium sp. STM 3809]
Length = 870
Score = 566 bits (1459), Expect = e-158, Method: Compositional matrix adjust.
Identities = 309/748 (41%), Positives = 449/748 (60%), Gaps = 42/748 (5%)
Query: 399 MVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVA 458
M+WEV A L I +L GA+ LILA+DPDREGEAI+WH++E+++++ AL + +
Sbjct: 1 MIWEVDPKAAGRLNDIAKSLKGADRLILATDPDREGEAISWHVLEVMKEKRALKDQ-KIE 59
Query: 459 RVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGR 518
RVVF+ IT+ ++ A++ R+ID LV AY+ARRALDYL+GF +SP+LWRKLPG +SAGR
Sbjct: 60 RVVFNAITKQAVSEAMKNPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGR 119
Query: 519 VQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLS 578
VQS AL L+CDRE+EI++F P+EYW++ A L + D A L K++ +L
Sbjct: 120 VQSVALRLVCDRELEIEKFVPREYWSLIATLATPRGDTFD-----ARLVGADGKKIQRLD 174
Query: 579 IGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKL 638
IG+ EA+D + +N+A + V + R P+ TSTLQQ+A+ KL F+ +TM++
Sbjct: 175 IGTGAEAEDFKNALNAATYSVATVDAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRI 234
Query: 639 AQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFK 698
AQ+LYEG+ + G GLITYMRTDG+ I+ EA + R +I E YG+ + P+ PR+Y
Sbjct: 235 AQRLYEGIDI-GGETTGLITYMRTDGVQIAPEAITQARKVIGEIYGNRYVPDS-PRQYQT 292
Query: 699 KVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI 758
K KNAQEAHEAIRPTD+ R PA L LD+D KLY LIW+RT+A QM+ A + + VDI
Sbjct: 293 KAKNAQEAHEAIRPTDLSRKPAELRKRLDDDQAKLYELIWTRTIASQMESAELERTTVDI 352
Query: 759 --GNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDP 816
++ R++ V+F GF A Y+ E +++ E L + G+
Sbjct: 353 VAKAGGRTLELRATGQVVKFDGFLALYQ----------EGRDDEEDEDSRRLPQMSQGEA 402
Query: 817 LYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILY 876
L + + QH T+PP R+SE SLVK++EELGIGRPSTYAS L VL+ R YV ++ + L+
Sbjct: 403 LKRQNLAVTQHFTEPPPRFSEASLVKRMEELGIGRPSTYASILDVLKARGYVKLEKKRLH 462
Query: 877 PEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCA 936
E +GR+V AFL ++F +Y FTAD+E +LD +S W+ +L D+W+ F
Sbjct: 463 GEDKGRVVIAFLENFFRRYVEYDFTADLEEQLDRISNNEIAWQQVLKDFWTGFIGAVDEI 522
Query: 937 QSLHIHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQ 992
+ L + QV L++ G ++ P +D R CP CG G L K +FGA F+GC+
Sbjct: 523 KDLRVAQVLDALDEMLGPHIYP--PREDGGDVRQCPTCGTGRLNLKAGKFGA--FVGCSN 578
Query: 993 HPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDR 1052
+P C Y L ++ +++G P S +V +K+G +G Y+QLGE +
Sbjct: 579 YPECRYTR-----------PLAADSEAAADRMLGQDPESGLEVAVKAGRFGPYIQLGEQK 627
Query: 1053 T---GYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
G PKRA + + L+ AL+LL P +G HP+ G PI L R G V+H
Sbjct: 628 DYAEGEKPKRAGIPKGTQPSDVDLDLALKLLSLPREIGKHPETGLPITAGLGRFGPFVKH 687
Query: 1110 RRTIASVPKNMKPNDVTLEKALEFLSGK 1137
+T AS+ + D+ L +A+ ++ K
Sbjct: 688 DKTYASLEAGDEVFDIGLNRAVTLIAEK 715
>gi|86137985|ref|ZP_01056561.1| DNA topoisomerase I [Roseobacter sp. MED193]
gi|85825577|gb|EAQ45776.1| DNA topoisomerase I [Roseobacter sp. MED193]
Length = 892
Score = 566 bits (1459), Expect = e-158, Method: Compositional matrix adjust.
Identities = 342/838 (40%), Positives = 485/838 (57%), Gaps = 77/838 (9%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL A++GSV D++F M WEV + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPAKNGSVDTDNEFEMTWEVGTDSRKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ + L ++ ++ ++ V+RV F+ IT+ ++
Sbjct: 63 KAIADALKEDNELILATDPDREGEAISWHLQQALTKRRSIKKDTPVSRVTFNAITKEAVA 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMRNPRQVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F PQEYW+V+A + F A LT +L++ S+ + T A+ Q
Sbjct: 183 MEIEAFNPQEYWSVKANMATPRGQ-----EFEARLTVLAGDKLDKYSLANSTAAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++S N V K+ + +NP+ P++TSTLQQ+A+ K A M AQ+LYE
Sbjct: 238 VSSRNM-VAKSVEAKPASRNPSAPFMTSTLQQEASRKFGMGAKQCMNAAQRLYE------ 290
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
AGLITYMRTDG+ ++ EA +E RS I RYG+ + P PR Y K KNAQEAHE I
Sbjct: 291 ---AGLITYMRTDGIDMAPEAVQEARSEIESRYGAEYVP-SSPRIYKNKAKNAQEAHECI 346
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT++ R L + ++D KLY LIW RT+ACQM A + + VD+G+ D +V R++
Sbjct: 347 RPTEMGRDAKSLK-VSEDDQRKLYDLIWKRTLACQMAGARLERTTVDLGSDDGQVVLRAT 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRH-------EAFAILNSLKT--------GD 815
+ F GF YE+ + +E+D+ EA +SL T G
Sbjct: 406 GQVMLFDGFLRVYEEGRDDVV-----DEDDKRLPQIMQGEALKFASSLATQAEKAGAEGS 460
Query: 816 PLYLGEVELK-QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRI 874
L + L QHHTQPP R++E +LVK++EELGIGRPSTYAS + +QDR YV
Sbjct: 461 ILSDNKAVLGLQHHTQPPPRFTEATLVKRMEELGIGRPSTYASVITTIQDREYVRKDKNR 520
Query: 875 LYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCT 934
L+PE +GR+V+ FL ++F Y FTA++E ELD+VSAG ++K +L +W FS+ +
Sbjct: 521 LFPEDKGRIVTIFLLNFFRTYVGYEFTANLEGELDDVSAGGRDYKDILSKFWRDFSAAIS 580
Query: 935 CAQSLHIHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGC 990
L I +V +L++T L+ P +D R CP CG G L K SR G F+GC
Sbjct: 581 ETSDLRISEVLDVLDETLAPQLYP--PREDGTDPRVCPKCGAGQLHLKTSRTGG--FVGC 636
Query: 991 NQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE 1050
+P CNY + + G+ E +++G +++ LKSG +G YVQ GE
Sbjct: 637 GNYPECNY-TRPISGEGAE----------GYERILGED--DGDEIHLKSGRFGPYVQRGE 683
Query: 1051 DR-TGYLPKRASV-SHIKDV------DSITLEDALELLRYPVNLGNHPKDGQPIMLRLAR 1102
P R+S+ K+ + +TLE A+ LL P +G HP+ G I L R
Sbjct: 684 ATPENKKPPRSSLPKQGKEFLPGWGPNDLTLEQAVTLLTLPREIGPHPEGGV-ISSNLGR 742
Query: 1103 AGFSVRH------RRTIASVPKNMKPNDVTLEKALEFLSGK--DVRRCGRPKGKPKRE 1152
G + H + A++ + + ++ + +A+E ++ K + R R KP RE
Sbjct: 743 FGPYIMHQLPEEEKPVYANLKETLDVFEIGMNRAMEMITEKRNNPGRGRRAAAKPLRE 800
>gi|253997957|ref|YP_003050020.1| DNA topoisomerase I [Methylovorus glucosetrophus SIP3-4]
gi|253984636|gb|ACT49493.1| DNA topoisomerase I [Methylovorus glucosetrophus SIP3-4]
Length = 858
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 320/794 (40%), Positives = 470/794 (59%), Gaps = 61/794 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+++VES +KAK ++ YLG +EVL SYGHVRDL ++G+V P++D++M +EV H+
Sbjct: 4 LLIVESPSKAKTLKKYLGSDFEVLASYGHVRDLIPKNGAVDPENDYAMKYEVIDRNSKHV 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ ++ + LA+DPDREGEAI+WHI E+L+ + L ++ + RVVFHEIT+ +++
Sbjct: 64 DAIAKAVRASDAIYLATDPDREGEAISWHIAEILKDK-KLIKDKLIKRVVFHEITKTAVQ 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ + R+I LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +RE
Sbjct: 123 NAIASPRDISMPLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
+EI+ FK QEYWT+ + KK H D A L ++ Q ++ + T+ +I K
Sbjct: 183 LEIEAFKSQEYWTIH-LESKKHQHLFD-----ARLVQLDGSKVEQFTVTNETQQAEIVGK 236
Query: 592 I---NSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ ++ V + K+ R P+ TSTLQQ+A KL F+ + M++AQ+LYEG+ +
Sbjct: 237 LLLASAGKTTVSRVEKKQKNRSPAAPFTTSTLQQEAVRKLGFTTSRAMRIAQQLYEGIDV 296
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
+GT GLITYMRTD ++ EA +IR I + + P+ P Y K KNAQEAHE
Sbjct: 297 GNGTV-GLITYMRTDSFSMAAEAVMQIRDYIKRNFEPDYLPK-SPIMYKTKAKNAQEAHE 354
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPTDI R P L L + +LY +IW R +ACQM PA + VD+ ++ +FR
Sbjct: 355 AIRPTDITRTPQSLKNYLTPEQFRLYEMIWKRALACQMAPAKFDAVSVDLAVGSDANLFR 414
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ + F GF A Y E +++ EA A L L+TG+ L + ++ QH
Sbjct: 415 ATGQTMIFPGFIAVY----------MEGQDDAEEEAEAKLPHLETGEVLDVNKIFGDQHF 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SLVK LEE GIGRPSTYAS + LQDR YV + + P GR+V+ FL
Sbjct: 465 TEPPPRYSEASLVKVLEEYGIGRPSTYASIISTLQDREYVLLDKKRFTPTDVGRVVNKFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F+ DY FTA++E ELD+++ G EW +L D+W F+ +++L
Sbjct: 525 TEHFTRYVDYGFTANLENELDDIAEGEREWVPVLDDFWQGFN--------------KQLL 570
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
EK D + + +CP CG+ L ++ RFG FIGC+ +P C+YI
Sbjct: 571 EKANIDRAEITQEDIGEACPKCGK-PLHSRLGRFGK--FIGCSGYPECDYI--------- 618
Query: 1009 EEDTLQRNTNVD-----EPKLIGHHPASKEKVLLKSGPYGFYVQLG--EDRTGYLPKRAS 1061
RNT + EP ++GH AS + +LL +GPYG Y+QLG E+ + PKR S
Sbjct: 619 ------RNTGSNAAASSEPVVMGHDAASDKDILLLNGPYGPYLQLGLPEEGSKKKPKRVS 672
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + ++ LE A++L+ P +LG HP+ G+ I+ + R G V H S+P++
Sbjct: 673 IPKEIPLANVDLEVAMKLIALPRDLGQHPETGKKIVANIGRFGPYVNHDGKFKSIPRSDS 732
Query: 1122 PNDVTLEKALEFLS 1135
D+ L +A+E L+
Sbjct: 733 VFDIDLPRAVELLA 746
>gi|383642228|ref|ZP_09954634.1| DNA topoisomerase I subunit omega [Sphingomonas elodea ATCC 31461]
Length = 856
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 327/761 (42%), Positives = 442/761 (58%), Gaps = 52/761 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y VL SYGHVRDL AR GSV PDD F+M WE + L
Sbjct: 3 LVIVESPAKAKTIEKYLGKDYRVLASYGHVRDLPARDGSVNPDDSFAMEWETYADKSKQL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I A+ LILA+DPDREGEAI+WH+ E+L+ + AL + V RV F+ IT+ +I
Sbjct: 63 KAIADEAKKADRLILATDPDREGEAISWHVQEVLRLKKALPKE--VERVTFNAITKPAIL 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+Q RE+D +L+ AY ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LI RE
Sbjct: 121 HAMQHPRELDTDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLIVGRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F QEYW+V A ++ D F A L ++ ++L++LSIG A+ ++
Sbjct: 181 REIESFVAQEYWSVIAEMES------DGTPFQARLVKWKGEKLDRLSIGDQGSAEAAKKA 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ F V+ + +R P P+ TSTLQQ+AA KL FSA++TM++AQ LYE
Sbjct: 235 VEEGRFTVVSVETKPAMRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQALYED------ 288
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G ITYMRTDG+ + A + R + +RY + P++ PR+Y K KNAQEAHEAIR
Sbjct: 289 ---GAITYMRTDGVQMDPSAIQAARKAVADRYDGSYVPDK-PRQYQTKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD + A SG D +LY LIW R +A QM A + + VD+ + R++
Sbjct: 345 PTDFSKDRAG-SG----DHARLYDLIWKRALASQMASARMERTTVDLADGTGQHGLRATG 399
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F G+ A YE+ + E +E+ R L + G V +QH TQP
Sbjct: 400 QVVLFPGYLALYEEG-----KDDEGDEDSRR-----LPRMSEGASPAKKAVNAEQHFTQP 449
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P R+SE SLVK+LEELGIGRPSTYAS ++VL+DR YV V+ + E GR+++AFL +
Sbjct: 450 PPRFSEASLVKRLEELGIGRPSTYASIIQVLKDRAYVRVEKNRFFAEESGRLLTAFLERF 509
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + + FTA +E ELD+VS G W+ +L +W F T + L++
Sbjct: 510 FEKYVSFDFTAGLEEELDDVSGGRAAWQAVLEAFWRDFKPRTTEVMEQKPSDITAALDQF 569
Query: 952 FGDSLF-ASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK-TLYGDDD 1008
LF A D R CP CG G L + RFGA F+ C+ +P C Y + G +
Sbjct: 570 LEPYLFPAKAGGSDPRLCPNCGVGKLALRGGRFGA--FVACSNYPECKYTRRFGQPGGEG 627
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDV 1068
EDT P+++G P + V KSG +G Y+QLGE + RAS+ KDV
Sbjct: 628 AEDT--------GPEVLGQDPETGLNVERKSGRFGPYIQLGEGKDA---ARASIP--KDV 674
Query: 1069 DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
D + LE AL+LL+ P +GNHP+ G PI + R G + H
Sbjct: 675 D-LDLEWALKLLKLPRTIGNHPETGNPITASIGRYGPYLAH 714
>gi|326387675|ref|ZP_08209281.1| DNA topoisomerase I [Novosphingobium nitrogenifigens DSM 19370]
gi|326207721|gb|EGD58532.1| DNA topoisomerase I [Novosphingobium nitrogenifigens DSM 19370]
Length = 877
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 321/759 (42%), Positives = 438/759 (57%), Gaps = 49/759 (6%)
Query: 355 VESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSI 414
+ES KAK I+ YLG Y+VL SYGHVRDL + GSVRPD+DF+M WE+ + +K+I
Sbjct: 1 MESPAKAKTIEKYLGPGYKVLASYGHVRDLPVKDGSVRPDEDFAMDWELYGDKQSRVKAI 60
Query: 415 KVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVAL 474
A A+ LILA+DPDREGEAI+WH+ E+L ++ AL ++ V RV F+ IT+A++ A+
Sbjct: 61 VDAAKDADRLILATDPDREGEAISWHVRELLSKRRALPKD--VQRVTFNAITKATVTAAM 118
Query: 475 QAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEI 534
+ R +D +L+ AYLARRALDYL GF +SP+LWRKLPG +SAGRVQS AL LI +RE EI
Sbjct: 119 EKPRALDQDLIDAYLARRALDYLFGFTLSPVLWRKLPGAKSAGRVQSVALRLIVEREREI 178
Query: 535 DEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINS 594
+ F+ QEYW++ A L+ + F A L ++L++L++G A + + +
Sbjct: 179 EAFRSQEYWSIVARLEHGGT------PFKARLVKLDGQKLDKLTLGDEGSAMRAKGLVEA 232
Query: 595 ANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAA 654
A F+V + R P+ TSTLQQ+AA KL FSA++TM++AQ LYE A
Sbjct: 233 ATFRVEDVETKPTRRHPQPPFTTSTLQQEAARKLGFSASHTMRVAQTLYE---------A 283
Query: 655 GLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTD 714
G ITYMRTDG+ + A R +I +RY H+ PE+ PR Y K KNAQEAHEAIRPTD
Sbjct: 284 GAITYMRTDGVQMDPSAISAARRVISDRYDGHYLPEK-PRHYETKAKNAQEAHEAIRPTD 342
Query: 715 IRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRV 774
R SG D +LY L+W R +A QM A++ + V + R++ V
Sbjct: 343 FAR-DHYGSG----DEARLYELVWKRALASQMASASIERTTVTLREGTGKHELRATGQVV 397
Query: 775 EFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPAR 834
F GF A YE+ ++ + + + +L ++ GD EVE QH TQPP R
Sbjct: 398 RFPGFLAVYEEG-------RDQKPDADDDESGLLPAMSAGDLPAKREVEANQHFTQPPPR 450
Query: 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSE 894
YSE SLVK+LEELGIGRPSTYA+TL+VL+DR YV V+ + E GR++++FL +F
Sbjct: 451 YSEASLVKRLEELGIGRPSTYAATLQVLKDRAYVRVEKNRFFAEESGRLLTSFLERFFDR 510
Query: 895 VTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGD 954
Y FTA ME ELD+VS G WK +L +W F +V L+ D
Sbjct: 511 YVAYEFTAGMEDELDDVSGGRAAWKDVLAAFWRDFKPKSDEVMEKKPSEVTAELDVFLAD 570
Query: 955 SLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF P D R CP C +G L + R+GA F+ C+ +P C + K +
Sbjct: 571 YLFP--PRADGGDPRQCPKCADGRLSLRGGRYGA--FVACSNYPECKFTRKF------AQ 620
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
E +G P S +V +SG +G Y+QLGE G KRAS+ KD+
Sbjct: 621 GGGADGEGEGEDAALGKDPVSGLEVTRRSGRFGPYIQLGE---GKEAKRASIP--KDIAE 675
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
+ LE AL+LL P +G HP+ G+PI + R G + H
Sbjct: 676 LDLEWALKLLSLPREIGPHPESGKPITASIGRYGPYLAH 714
>gi|340028018|ref|ZP_08664081.1| DNA topoisomerase I subunit omega [Paracoccus sp. TRP]
Length = 851
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 333/791 (42%), Positives = 461/791 (58%), Gaps = 48/791 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLGD Y VL S+GHVRDL + GSV P+ DF+M WEV + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGDDYTVLASFGHVRDLPPKDGSVDPEADFAMKWEVAAESRKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+IK AL+ LILA+DPDREGEAI+WH++E L AL + V+RV F+ IT++++
Sbjct: 63 KAIKDALASDPTLILATDPDREGEAISWHLLETLAP--ALKKGAEVSRVTFNAITKSAVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL +I DRE
Sbjct: 121 EAMANPRQIDQPLVDAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVALRIIVDRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ FK +EYWTV A L D A+LT F ++L + + + +AK
Sbjct: 181 MEIEAFKAREYWTVHARLATPRGDEFD-----ANLTVFGGRKLERFDLATEEQAKLAVTA 235
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I S + +V+ + + R P++TSTLQQ+A+ KL A M AQ+LYE
Sbjct: 236 ITSRDLKVLSVAAKPASRNPWPPFMTSTLQQEASRKLGLGARACMSAAQRLYE------- 288
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R I R+G+ + P + PR Y K KNAQEAHE IR
Sbjct: 289 --AGYITYMRTDGIDMAPEAVMAARDAIRARFGAEYLP-KSPRMYKNKAKNAQEAHECIR 345
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ P L + D+D LY LIW RT+A QM+ A + + V+IG+AD + R++
Sbjct: 346 PTDMMLSPDRLP-VSDKDQKALYDLIWKRTLASQMESARMERTTVEIGSADGQVGLRATG 404
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
+ F GF Y D G R E +E+ R L + G+ V +QH TQP
Sbjct: 405 QVMLFDGFLKIY---DQG--RDDEEDEDGRR-----LPLIHEGETPEKRSVTSEQHFTQP 454
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVK++EELGIGRPSTYAS + +Q+R+YV + L PE +GR+V+ FL Y
Sbjct: 455 PPRYTEATLVKRMEELGIGRPSTYASIIGTIQERDYVRKEQNRLIPEDKGRLVTIFLQKY 514
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F Y FTA++E ELD++S+G ++ +L +W F++ L I +V + ++
Sbjct: 515 FPRYVSYDFTANLEGELDDISSGERAYREVLRRFWRDFTAALESTADLRIGEVLEAIDDA 574
Query: 952 FGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDE 1009
L+ P+ R CP+C +G L K +R G G FIGC+ +P C + + + + E
Sbjct: 575 LAPHLYPPRPDGSDPRECPLCHKGRLHLKTARSG-GAFIGCSNYPECRF-TRPISSPEGE 632
Query: 1010 --EDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRT-GYLPKRASVSHIK 1066
DT+ N DE + LK+G +G YVQ GE P RAS+
Sbjct: 633 VMGDTVLGVDNGDE-------------ISLKNGRFGPYVQRGEATAENPKPPRASIPKGW 679
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
D S+ LE AL LL P +G HP+DG + + R G V+H T A++P + +
Sbjct: 680 DTGSVDLERALALLALPREIGPHPEDGVLVEAGIGRYGPYVKHGATYANLPDVDEVFTIG 739
Query: 1127 LEKALEFLSGK 1137
+ +A+E L+ K
Sbjct: 740 MNRAVEVLASK 750
>gi|91774583|ref|YP_544339.1| DNA topoisomerase I [Methylobacillus flagellatus KT]
gi|91708570|gb|ABE48498.1| DNA topoisomerase I [Methylobacillus flagellatus KT]
Length = 845
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 315/789 (39%), Positives = 463/789 (58%), Gaps = 54/789 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+++VES +KAK ++ YLG +EVL SYGHVRDL ++G+V PD DF+M +EV H+
Sbjct: 4 LLIVESPSKAKTLKKYLGKDFEVLASYGHVRDLVPKTGAVDPDHDFAMKYEVIDRNARHV 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ A+ + LA+DPDREGEAI+WHI E + + L ++ + RVVFHEIT+ +++
Sbjct: 64 DAIAKAVKTADAIYLATDPDREGEAISWHIAE-ILKSKKLLKDKLIKRVVFHEITKNAVQ 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R+I LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +RE
Sbjct: 123 NAIEEPRDISMPLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
+EI+ FK QEYWT+ + K H D A L + K++ Q +I + + +++ K
Sbjct: 183 LEIEAFKSQEYWTIH-LESAKHQHVFD-----AKLVQLEGKKVEQFTITNQAQQQEVVGK 236
Query: 592 ---INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V + K+ R P+ TSTLQQ+A KL F+ + TM++AQ+LYEG+ +
Sbjct: 237 LLAVSAGKTTVSRVEKKQRSRSPAAPFTTSTLQQEAVRKLGFTTSRTMRVAQQLYEGIDI 296
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
GT GLITYMRTD ++ EA +IR I + + + + P+ P Y K KNAQEAHE
Sbjct: 297 GSGTM-GLITYMRTDSFSLATEAVMQIRDYIKQNFAAEYLPK-SPIMYKTKAKNAQEAHE 354
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPTDI R PA + L ++ +LY +IW R +ACQM A + +D+ ++ +FR
Sbjct: 355 AIRPTDISRTPASMRAFLTDEQFRLYEMIWKRALACQMTQAKFDAVSIDLAVGSDANLFR 414
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ + F GF A Y + E++ L L+TG+ L + ++ QH
Sbjct: 415 ATGQTLIFPGFIAVYMEGVDDEEEEGESK----------LPHLETGEVLAVQKIYGDQHF 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RYSE SLVK LEE GIGRPSTYAS + LQDR YV + + P GR+V+ FL
Sbjct: 465 TEPPPRYSEASLVKALEEYGIGRPSTYASIISTLQDREYVVLDKKRFIPTDVGRVVNKFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F+ DY FTA++E ELD+++ G EW +L ++W F++ ++ VE +
Sbjct: 525 TEHFTRYVDYGFTANLENELDDIAEGEREWIPVLNEFWQGFNNQIHEKSNVERPGVEML- 583
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
D +CP CG+ L ++ RFG FIGC+ +P C+YI
Sbjct: 584 ---------------DEACPKCGK-PLQSRLGRFGK--FIGCSGYPECDYIRNP------ 619
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG--EDRTGYLPKRASVSHIK 1066
N N +EP +IG P S + +LL +GPYG Y+Q+G E + PKR S+
Sbjct: 620 -----NANANNNEPTVIGQEPESGKDILLLNGPYGPYLQIGLPEADSKKKPKRVSIPKEI 674
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
V S+ +E AL+L+ P +LG HP+ G+ ++ + R G V H S+PK+ D+
Sbjct: 675 PVSSLDMETALKLIALPRDLGQHPETGKKVVANIGRFGPYVNHDGKFKSIPKSESVFDID 734
Query: 1127 LEKALEFLS 1135
L +A+E L+
Sbjct: 735 LARAIELLA 743
>gi|114763468|ref|ZP_01442875.1| DNA topoisomerase I [Pelagibaca bermudensis HTCC2601]
gi|114544006|gb|EAU47017.1| DNA topoisomerase I [Roseovarius sp. HTCC2601]
Length = 906
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 335/818 (40%), Positives = 460/818 (56%), Gaps = 78/818 (9%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV P++DFSM WE+ + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPPKDGSVDPEEDFSMKWEIGNDSRKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL LILA+DPDREGEAI+WH+ E L ++ ++ ++ V RV F+ IT+A++
Sbjct: 63 AAIAEALKSDNALILATDPDREGEAISWHLKEALTKRRSIKKDTDVRRVTFNAITKAAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+Q REIDA LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMQNPREIDAPLVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ FKP+EYW V+A+L + A LT K+L++ I + T+A+ Q
Sbjct: 183 MEIEAFKPREYWQVKALLSTPRGQD-----YEARLTMLAGKKLDRFDIENATQAEMAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S ++ + R P++TSTLQQ+A+ K A M AQ+LYE
Sbjct: 238 VASRKLEIASVEAKPSSRNPSAPFMTSTLQQEASRKFGMGARACMSAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R I +R+G + P PR Y K KNAQEAHE IR
Sbjct: 291 --AGHITYMRTDGIDMAPEATAACRDAIADRFGKDYVPG-SPRIYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ + A L L ++D KLY LIW RT+ACQM+ A + + V+I + D + R++
Sbjct: 348 PTDMTKDAASLK-LREDDQRKLYDLIWKRTLACQMEAARLERTTVEIASPDGQVGLRATG 406
Query: 772 SRVEFLGFQAAYED-----------------------VDAGAIRYKENEENDRHEAFAIL 808
V F GF YE+ +R + + +++ + A
Sbjct: 407 QVVLFDGFLRVYEEGRDDVADDDDKRLPQIMQGEAANFAKAGLRDQYAKASEKADPAAGP 466
Query: 809 NSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYV 868
++ +G+ LG Q TQPP RY+E +LVKK+EELGIGRPSTYAS + +QDR YV
Sbjct: 467 AAMISGNDAVLG----TQSFTQPPPRYTEATLVKKMEELGIGRPSTYASVIGTIQDREYV 522
Query: 869 TVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSR 928
+ L PE +GR+V+ FL ++F Y FTA++E ELD VSAG ++K LL +W
Sbjct: 523 RKEQNRLIPEDKGRIVTIFLLNFFRTYVGYEFTAELENELDEVSAGEMDYKALLGKFWRD 582
Query: 929 FSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGA 984
FS+ + L I +V +L++ L+ P +D R CP CG+G L K SR G
Sbjct: 583 FSAAISETSELRISEVLDVLDEALAPQLYP--PREDGSDPRICPKCGQGRLHLKTSRTGG 640
Query: 985 GYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGF 1044
F+GC +P C Y + + G+ E E K++G ++++ LK+G +G
Sbjct: 641 --FVGCGNYPECTY-TRPIAGEGAE----------GEEKMLGLD--GEDEIWLKAGRFGP 685
Query: 1045 YVQLGEDR-TGYLPKRASVSHIKD-------VDSITLEDALELLRYPVNLGNHPKDGQPI 1096
YVQ GE P RAS+ + D +TLE AL LL P +G HP DG I
Sbjct: 686 YVQRGEPTPENKKPPRASLPKARGNFLPGWAPDDMTLEKALTLLTLPREIGMHP-DGGVI 744
Query: 1097 MLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFL 1134
L R G + H+ P KP V L++ E
Sbjct: 745 KSNLGRFGPYIMHQ-----APDEEKPVYVNLKEFQEVF 777
>gi|395491468|ref|ZP_10423047.1| DNA topoisomerase I subunit omega [Sphingomonas sp. PAMC 26617]
Length = 879
Score = 564 bits (1453), Expect = e-157, Method: Compositional matrix adjust.
Identities = 317/761 (41%), Positives = 434/761 (57%), Gaps = 50/761 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y VL SYGHVRDL + GSV PD+ F+M WE + L
Sbjct: 3 LVIVESPAKAKTIEKYLGSDYRVLASYGHVRDLPPKDGSVNPDEGFAMEWENYADKTKQL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I A+ LILA+DPDREGEAI+WH+ E+L+ + AL ++ V RV F+ IT+A++
Sbjct: 63 KAITDLAKTADRLILATDPDREGEAISWHVQEVLRNRKALPKD--VQRVTFNAITKATVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ RE+D +L+ AY ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LI RE
Sbjct: 121 DAMKHPRELDTDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLIVSRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+ QEYW+V A +++ D F A L F+ K+L++LSIG A +
Sbjct: 181 REIEAFRAQEYWSVIADMEQ------DGTPFQARLVTFEGKKLDRLSIGEEGVANRAKAA 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ +F V + R P P+ TSTLQQ+A+ KL FSA +TM++AQ LYE
Sbjct: 235 VEQGHFTVQSVEVKPATRNPPPPFTTSTLQQEASRKLGFSADHTMRIAQGLYED------ 288
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G ITYMRTDG+ + A R + RY + + P++ PR Y K KNAQEAHEAIR
Sbjct: 289 ---GAITYMRTDGVQMDSSAISAARHAVANRYDASYVPDK-PRVYQTKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD + A D +LY LIW R +A QM A + + V++ + R++
Sbjct: 345 PTDFGKDKAGGG-----DHARLYDLIWKRALASQMASARMERTTVEMADGTGHTALRATG 399
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
+ F G+ A YE E ++ + E L L+ GD V +QH TQP
Sbjct: 400 QVMLFPGYLALYE----------EGSDDTQDEDAKRLPRLREGDAPAKKGVTAEQHFTQP 449
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P R+SE SLVK+LEELGIGRPSTYAS +K L+DR YV V+ + E GR+V+AFL +
Sbjct: 450 PPRFSEASLVKRLEELGIGRPSTYASIIKTLKDREYVRVEKNRFFAEESGRLVTAFLERF 509
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + Y FT+ +E ELD VS G EW+ +L +W F T +V L+K
Sbjct: 510 FEKYVSYDFTSGLEDELDEVSGGRAEWQAVLEAFWKDFKPRTTEVMEQKPSEVTAELDKF 569
Query: 952 FGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDE 1009
LF + + R CP CG+G L + +FGA F+ C+ +P C Y + D
Sbjct: 570 LAPYLFPPMADGSDPRLCPNCGQGQLALRGGKFGA--FVACSNYPECKYTRRFGQPGADG 627
Query: 1010 EDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDV 1068
E VD P+ +G+ P + V KSG +G Y+Q+GE T R S KD+
Sbjct: 628 E-------GVDTGPETLGNDPETGLPVERKSGRFGPYIQIGEGET-----RKMASIPKDI 675
Query: 1069 DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
+ L+ AL+LL P +G HP+ G+PI + R G ++H
Sbjct: 676 GELDLQWALKLLSLPRTIGTHPETGEPITAAIGRYGPYLKH 716
>gi|390167768|ref|ZP_10219748.1| DNA topoisomerase I subunit omega [Sphingobium indicum B90A]
gi|389589633|gb|EIM67648.1| DNA topoisomerase I subunit omega [Sphingobium indicum B90A]
Length = 862
Score = 564 bits (1453), Expect = e-157, Method: Compositional matrix adjust.
Identities = 319/770 (41%), Positives = 449/770 (58%), Gaps = 54/770 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG + VL SYGH+RDL + GSV PD+ F+M WE L
Sbjct: 3 LVIVESPAKAKTIEKYLGGDFHVLASYGHIRDLPPKDGSVDPDNGFAMSWENYGDKGKQL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I A LILA+DPDREGEAI+WH+ E+L+ + AL + V RV F+ IT+ ++
Sbjct: 63 KAIADEAKKATRLILATDPDREGEAISWHVQEVLRAKKALPQK--VDRVTFNAITKQAVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R +D +L+ AY ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ +RE
Sbjct: 121 EAMAQPRALDEDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVERE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F PQEYW+V A +++ F A L ++ +++ +L+IG ++ +
Sbjct: 181 REIESFVPQEYWSVAAEMEQAGQ------GFTARLVKWRGEKIERLTIGREGDSMAAKAD 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + F V K + + R P P+ TSTLQQ+AA KL FSA++TM++AQ+LYE
Sbjct: 235 VEAGRFTVEKVETKPVSRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQQLYED------ 288
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G ITYMRTDG+ + A R I ERY + PE+ PR+Y K KNAQEAHEAIR
Sbjct: 289 ---GAITYMRTDGVQMDGSAISAARKAIAERYDGGYLPEK-PRQYQTKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+ R + SG D +LY LI+ R +A QM A + + VD+ + R++
Sbjct: 345 PTEFYR-DKVGSG----DHGRLYDLIFKRALASQMASARLERTTVDLVDGTGQHGLRATG 399
Query: 772 SRVEFLGFQAAYE----DVDAGAIRYK--ENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
V F GF A YE D + G+ ++ + E++D +L + GD +V +
Sbjct: 400 QVVIFPGFLALYEEGRDDPERGSGKHASADGEDDDSK----LLPRMAAGDAPAKRKVTAE 455
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH TQPP RYSE SLVKKLEELGIGRPSTYASTL+VL+DR+YV ++ + E GR+V+
Sbjct: 456 QHFTQPPPRYSEASLVKKLEELGIGRPSTYASTLQVLKDRDYVRIEKNRFFAEESGRLVT 515
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
AFL +F Y FTA +E ELD++S G +W+ +L +W F +
Sbjct: 516 AFLERFFERYVSYDFTAGLEEELDDISGGRAQWQAVLEAFWRDFKPKTAEVMEQKPSDIT 575
Query: 946 KMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK 1001
L+K LF P D R+CP+CG+G L + RFGA FI C+ +P C Y K
Sbjct: 576 AELDKFLEPMLFP--PKADGSNPRACPMCGDGQLSLRGGRFGA--FIACSNYPECKYTRK 631
Query: 1002 --TLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKR 1059
G D ED+ P+++G HP + + ++ KSG +G Y+++GE G KR
Sbjct: 632 FGQPGGKDGAEDS--------GPEVLGKHPETGQDIVRKSGRFGPYIEMGE---GKEAKR 680
Query: 1060 ASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
S+ +TL+ A++LL P +G HP+ G+PI+ + R G + H
Sbjct: 681 GSIPKDLPDGELTLDWAVKLLSLPREIGPHPETGKPIVANIGRFGPYLLH 730
>gi|85708362|ref|ZP_01039428.1| DNA topoisomerase I [Erythrobacter sp. NAP1]
gi|85689896|gb|EAQ29899.1| DNA topoisomerase I [Erythrobacter sp. NAP1]
Length = 858
Score = 564 bits (1453), Expect = e-157, Method: Compositional matrix adjust.
Identities = 337/808 (41%), Positives = 461/808 (57%), Gaps = 59/808 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++VL SYGHVRDL + GSVRPD+DF+M WE+ +
Sbjct: 3 LVIVESPAKAKTIEKYLGSDFKVLASYGHVRDLPPKDGSVRPDEDFAMDWELYRDKQSRF 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K I A GA L+LA+DPDREGEAI+WH+ E+L+++ AL V RV F+ IT++++
Sbjct: 63 KEIADAAKGASRLVLATDPDREGEAISWHVQELLKKRKAL--PTKVDRVTFNSITKSAVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+++ RE+D L+ AYL RRALDYL GF +SP+LWRKLPG +SAGRVQS AL LI DRE
Sbjct: 121 EAMKSPRELDQPLIDAYLGRRALDYLFGFTLSPVLWRKLPGAKSAGRVQSVALRLIVDRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKP EYW+V A L+ D +F A L ++ ++L +LS+G+ A + +
Sbjct: 181 REIEAFKPDEYWSVLAHLEH------DGTAFDARLVRYKGEKLEKLSLGAEGIAMEAKAA 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ F V K+ + R P+ TST+QQ+AA KL FSA++TM+LAQ LYE
Sbjct: 235 VEGGRFTVEDVEKKPLKRNPAPPFTTSTMQQEAARKLGFSASHTMRLAQSLYE------- 287
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ + A R I E++ + + PE+ PR Y K KNAQEAHEAIR
Sbjct: 288 --AGAITYMRTDGVQMDPGAINACREAIGEKFDAAYLPEK-PRFYSTKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+ R A G DE KLYSLIW R MA QM A + + V + +A R++
Sbjct: 345 PTNFSRDRA---GGGDE--AKLYSLIWKRAMASQMSTAQLERTTVTLRDATGQHELRATG 399
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F G+ A Y +E ++ + IL +LK GD VE QH TQP
Sbjct: 400 QVVVFPGYFAIY----------QEGLDDQDDDEDGILPALKNGDVPAKTGVEATQHFTQP 449
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P R+SE SLVK+LEELGIGRPSTYAST++ L+DRNYV ++ + E GR+++AFL +
Sbjct: 450 PPRFSEASLVKRLEELGIGRPSTYASTIQTLRDRNYVRMEKNRFFAEESGRLLTAFLERF 509
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F Y FTA ME ELD VS G ++K LL +W F +V ++L++
Sbjct: 510 FPTYVAYDFTAGMEDELDTVSDGREDYKELLAKFWQDFKPKADEVMEKMPSEVTEVLDEY 569
Query: 952 FGDSLFASLPNKD----RSCPVCGE-----GTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
D LF P +D R CP+C G L + R GA FI C +P C +
Sbjct: 570 LSDYLFP--PREDGKDARYCPLCDAEGRSGGRLALRGGRNGA--FIACANYPECKFTRSF 625
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
+D ++ +Q ++G HP + + KSG +G YV++ D KRAS+
Sbjct: 626 GPPREDGDEAVQDG-------VMGQHPETGADIHRKSGRFGPYVEMEVDEK---KKRASI 675
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
KDVD LE A++LL P +G HP+ G+ I + R G +RH A++
Sbjct: 676 P--KDVDDFDLEWAIKLLELPRIIGAHPETGKEIEAAIGRYGPYLRHDGKYANLKTTQDV 733
Query: 1123 NDVTLEKALEFLSGKDVRRC-GRPKGKP 1149
D + A+ L+ R+ GR K +P
Sbjct: 734 FDTGMNAAVTLLAEAAERKGRGRAKAEP 761
>gi|308805086|ref|XP_003079855.1| COG0550: Topoisomerase IA (ISS) [Ostreococcus tauri]
gi|116058312|emb|CAL53501.1| COG0550: Topoisomerase IA (ISS) [Ostreococcus tauri]
Length = 1006
Score = 563 bits (1452), Expect = e-157, Method: Compositional matrix adjust.
Identities = 343/867 (39%), Positives = 488/867 (56%), Gaps = 91/867 (10%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
+++++VES KAK I+ YLG +VL SYGHVRDL + GSVRP++ F+M W +
Sbjct: 48 RTLMIVESPAKAKTIEKYLGPGAKVLASYGHVRDLLNKQGSVRPEEAFAMTWTSTARQRA 107
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+K I AL A+ L+LA+DPDREGEAI+WH++E+L+++ L +N+ V RV F EIT+++
Sbjct: 108 AVKDIADALRQADVLLLATDPDREGEAISWHLLEVLREKKLLRDNLDVKRVTFGEITKSA 167
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPG--CQSAGRVQSAALSLI 527
+ A+ + REI+ +V AY+ARRALDYL GF +S LLWRKLP SAGRVQS AL LI
Sbjct: 168 VLNAVASPREINTPMVDAYMARRALDYLFGFTLSGLLWRKLPSSVSLSAGRVQSVALRLI 227
Query: 528 CDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 587
C+RE E++ F + YWTV A L K D SF A LTH +L + +I S+ +A+
Sbjct: 228 CEREEEVESFVSEPYWTVTANLLSK-----DGASFDAALTHVDGTKLGKFTIASNDQAET 282
Query: 588 IEQKINSANFQVIKNSKRSMV-RKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+++ + + K S R + P+ TST+QQ+A +L F A+ TM AQ+LYEG
Sbjct: 283 YARRVQECDSLRVTGLKLSEAKRSSGPPFTTSTMQQEANKQLGFGASRTMSAAQRLYEGA 342
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKV-KNAQE 705
GT GLITYMRTDG +++ A +R E +G+ + PE PR YFKK KNAQE
Sbjct: 343 ----GTGEGLITYMRTDGTYVAPYAIDGLRDTAIELFGADYVPES-PR-YFKKTQKNAQE 396
Query: 706 AHEAIRPTDIRRLPAMLSGLL--DEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADE 763
AHEAIRPT R+PA ++ +L D +LY+LIW+R MA QM PA ++ +I + D
Sbjct: 397 AHEAIRPTKAGRVPAQVAKMLGPGSDEARLYALIWARAMASQMTPALSDRVAAEISSEDG 456
Query: 764 SIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVE 823
S+ +++ +R++F GF AAY A ND A L L+ D L + +
Sbjct: 457 SLQLKANGNRLKFPGFLAAYRTSRPDA----PPPSND-----AWLPELRESDSLAVNVDD 507
Query: 824 ------LKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYP 877
H T PP RY++GS+VK LEE GIGRPSTYA LKVL R YV + L P
Sbjct: 508 QTLGCAATSHTTSPPPRYTDGSIVKALEERGIGRPSTYAPILKVLAQREYVAKQGAALIP 567
Query: 878 EFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQ 937
RGR+VSAFL++YF DY FTA++E +LD ++A +W+ LL ++W+ F + +
Sbjct: 568 TTRGRLVSAFLTNYFETYVDYGFTANLEQKLDEITAENVQWRPLLEEWWTPFKNQISSLS 627
Query: 938 SLHIHQVEKMLEKTFGDSLFASLP-------NKD----------------------RSCP 968
+L + +V L++ G LF N D R CP
Sbjct: 628 TLRVSEVIDALDEKLGQHLFGEEKYDGYVHVNPDQVSDVGDGTTTSTNDAQEVSDARKCP 687
Query: 969 VCGEGTLIFKVSRFGAGYFIGCNQHPRCNY------IAKTLYGDDDEEDTLQRNTNVD-- 1020
C G L K S+ G FIGC+++P C + I + D D+ D + + + D
Sbjct: 688 SCKTGRLGLKPSKSGG--FIGCSRYPECGFTHPLHPIRGAIVSDTDDADFMASDASSDVL 745
Query: 1021 -EPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYL------------PKRASVSHI-K 1066
PK++G P + ++ L+ GPYG Y+QLGE + P+R V++I K
Sbjct: 746 LYPKILGVDPETGSEISLRLGPYGPYLQLGEKAAPVVSEDGKKAKKPPAPRRVGVANIEK 805
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM-----K 1121
DV +TLEDA+ L YP +G HP P+ + + G+ V ASV K++
Sbjct: 806 DVSELTLEDAVRLFEYPKEIGKHPMTESPVSINMGPFGYYVACDGINASVGKSVLKRVGS 865
Query: 1122 PNDVTLEKALEFLSGKDVRRCGRPKGK 1148
++VTLE+A+E L K R R +G+
Sbjct: 866 LDNVTLEEAVELLR-KKAERPPRTRGR 891
>gi|452751181|ref|ZP_21950927.1| DNA topoisomerase I [alpha proteobacterium JLT2015]
gi|451961331|gb|EMD83741.1| DNA topoisomerase I [alpha proteobacterium JLT2015]
Length = 879
Score = 563 bits (1452), Expect = e-157, Method: Compositional matrix adjust.
Identities = 327/809 (40%), Positives = 458/809 (56%), Gaps = 44/809 (5%)
Query: 346 PPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPS 405
P ++V+VES KAK I YLG YEVL SYGHVRDL + GSV PD DF+M W+V S
Sbjct: 5 PIIASNLVIVESPAKAKTINKYLGSDYEVLASYGHVRDLPPKDGSVDPDADFAMKWQVQS 64
Query: 406 AAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEI 465
LK I A LILA+DPDREGEAI+WH+ E L+ + AL E V RV F++I
Sbjct: 65 DRSKQLKEIAEKAKKAGTLILATDPDREGEAISWHLYEHLKSKKALPER--VQRVTFNQI 122
Query: 466 TEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALS 525
T+ ++ A+ A R++D LV+AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL
Sbjct: 123 TKNAVSAAMAAPRDLDGPLVEAYLARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALR 182
Query: 526 LICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEA 585
LI +RE EI+ F+ QEYWTV+ + ++ F A L +Q K+L++ ++ A
Sbjct: 183 LITEREREIEAFRAQEYWTVKGQFETEKGQG-----FEARLVRWQGKQLDKFTLSKAALA 237
Query: 586 KDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
+ + + + +QV + + R P+ TSTLQQ+A+ KL SA+ TM+ AQ LYE
Sbjct: 238 AEAKADVLAGEYQVAAVETKPVTRNPYPPFTTSTLQQEASRKLGISASDTMRTAQALYE- 296
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
AG ITYMRTDG+ ++ EA E R++I +RY H P PR Y K KNAQE
Sbjct: 297 --------AGYITYMRTDGVEMAGEAIAEARAVIKDRYSERHVPA-SPRVYKSKAKNAQE 347
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEAIRP ++ + P ++ L D +LY L+W RT+A QM A + + V + +
Sbjct: 348 AHEAIRPVNLTKGPEQVASLPDAQ-RRLYDLVWKRTLASQMASAKLDRTTVLLQDKHGRA 406
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
R+S F GF A Y++ + E++ + L + G + +
Sbjct: 407 ELRASGQVTVFPGFLALYQETRDDSGEEDEDDRS--------LPKIDKGSSPAIKDASAD 458
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH TQPP RYSE SLVK+LEELGIGRPSTYAS L+VL+DR+YV ++ + PE +GR+++
Sbjct: 459 QHFTQPPPRYSEASLVKQLEELGIGRPSTYASILQVLKDRDYVVLEQKRFKPEEKGRLLT 518
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
AFL +F +Y FTA +E +LD +SAG E+K +L +W F L +V
Sbjct: 519 AFLERFFERYVEYDFTAGLEGQLDEISAGDAEYKAVLRAFWQDFFPKTQEIMELKPSEVT 578
Query: 946 KMLEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
+ L++ LF P K+ R+CP C G L + +FG FI C+ +P C Y
Sbjct: 579 EALDEFLEPFLF---PEKEDGSDPRACPSCENGRLALRGGKFGP--FIACSNYPDCKYTR 633
Query: 1001 KTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRA 1060
YG + E + PK +G HP E V L+SG +G +VQ GE+ P RA
Sbjct: 634 P--YGKEGGEGD---EVAGELPKTLGAHPEDGEPVSLRSGRFGLFVQHGEEDKK--PPRA 686
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
S+ DV + L A++LL P +G HP+ G+ I + R G +RH A +
Sbjct: 687 SIPRDIDVADVDLAMAVKLLSLPRIIGQHPETGKDIEASIGRYGPYLRHDGKYARLTSTA 746
Query: 1121 KPNDVTLEKALEFLSGKDVRRCGRPKGKP 1149
+ + + A+ L+ + + GR K +P
Sbjct: 747 EVFETGMNAAVVKLA-EAAEKGGRKKAEP 774
>gi|404255242|ref|ZP_10959210.1| DNA topoisomerase I subunit omega [Sphingomonas sp. PAMC 26621]
Length = 884
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 317/761 (41%), Positives = 434/761 (57%), Gaps = 50/761 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y VL SYGHVRDL + GSV PD+ F+M WE + L
Sbjct: 3 LVIVESPAKAKTIEKYLGSDYRVLASYGHVRDLPPKDGSVNPDEGFAMEWENYADKTKQL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I A+ LILA+DPDREGEAI+WH+ E+L+ + AL ++ V RV F+ IT+A++
Sbjct: 63 KAITDLAKTADRLILATDPDREGEAISWHVQEVLRNRKALPKD--VQRVTFNAITKATVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ RE+D +L+ AY ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LI RE
Sbjct: 121 DAMKHPRELDTDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLIVSRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+ QEYW+V A +++ D F A L F+ K+L++LSIG A +
Sbjct: 181 REIEAFRAQEYWSVIADMEQ------DGTPFQARLVTFEGKKLDRLSIGEEGVANRAKAA 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ +F V + R P P+ TSTLQQ+A+ KL FSA +TM++AQ LYE
Sbjct: 235 VEQGHFTVQSVEVKPATRNPPPPFTTSTLQQEASRKLGFSADHTMRIAQGLYED------ 288
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G ITYMRTDG+ + A R + RY + + P++ PR Y K KNAQEAHEAIR
Sbjct: 289 ---GAITYMRTDGVQMDSSAISAARHAVANRYDASYVPDK-PRVYQTKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD + A D +LY LIW R +A QM A + + V++ + R++
Sbjct: 345 PTDFGKDKAGGG-----DHARLYDLIWKRALASQMASARMERTTVEMADGTGHTGLRATG 399
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
+ F G+ A YE E ++ + E L L+ GD V +QH TQP
Sbjct: 400 QVMLFPGYLALYE----------EGSDDTQDEDAKRLPRLREGDAPAKKGVTAEQHFTQP 449
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P R+SE SLVK+LEELGIGRPSTYAS +K L+DR YV V+ + E GR+V+AFL +
Sbjct: 450 PPRFSEASLVKRLEELGIGRPSTYASIIKTLKDREYVRVEKNRFFAEESGRLVTAFLERF 509
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + Y FT+ +E ELD VS G EW+ +L +W F T +V L+K
Sbjct: 510 FEKYVSYDFTSGLEDELDEVSGGRAEWQAVLEAFWKDFKPRTTEVMEQKPSEVTAELDKF 569
Query: 952 FGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDE 1009
LF + + R CP CG+G L + +FGA F+ C+ +P C Y + D
Sbjct: 570 LAPYLFPPMADGSDPRLCPNCGQGQLALRGGKFGA--FVACSNYPECKYTRRFGQPGADG 627
Query: 1010 EDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDV 1068
E VD P+ +G+ P + V KSG +G Y+Q+GE T R S KD+
Sbjct: 628 E-------GVDTGPETLGNDPETGLPVERKSGRFGPYIQIGEGET-----RKMASIPKDI 675
Query: 1069 DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
+ L+ AL+LL P +G HP+ G+PI + R G ++H
Sbjct: 676 GELDLQWALKLLSLPRTIGTHPETGEPITAAIGRYGPYLKH 716
>gi|103486699|ref|YP_616260.1| DNA topoisomerase I [Sphingopyxis alaskensis RB2256]
gi|98976776|gb|ABF52927.1| DNA topoisomerase [Sphingopyxis alaskensis RB2256]
Length = 849
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 318/786 (40%), Positives = 448/786 (56%), Gaps = 55/786 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++VL SYGHVRDL + GSV PDD F+M W++ L
Sbjct: 3 LVIVESPAKAKTIEKYLGRDFKVLASYGHVRDLPPKDGSVDPDDGFAMQWQLYPDKAKRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K I A GA+ LILA+DPDREGEAI+WH+ E+L+ + AL V RV F+ IT+ ++
Sbjct: 63 KEISDAAKGADRLILATDPDREGEAISWHVQELLRSKKAL--PAAVDRVTFNAITKQAVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ RE+D +L+ AY ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ +RE
Sbjct: 121 DAMRHPRELDTDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVERE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F Q+YW+V + + + F A L+ ++ ++ +LSI S +A+ E
Sbjct: 181 REIEAFVAQQYWSVTGLFE------MGGTPFKARLSRWRGDKIERLSITSEADARAAEAD 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + +F V + + R P P+ TSTLQQ+AA KL FSA++TM++AQ LYE
Sbjct: 235 VKAGHFTVDTVETKPLTRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQALYED------ 288
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G ITYMRTDG+ + A R I RY + P++ PR+Y K KNAQEAHEAIR
Sbjct: 289 ---GAITYMRTDGVQMDGSAISAARKAIATRYDGGYVPDK-PRQYQTKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD + + D +LY LIW R +A QM A + + V++ + R++
Sbjct: 345 PTDFGK-----DKVGGGDHARLYELIWKRALASQMASARLERTSVELSDGTGKTTLRATG 399
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V+F GF A Y+ E ++ E +L ++ GD VE+++H TQP
Sbjct: 400 QVVKFPGFLALYD----------EGRDDAEDEDARLLPAMAKGDAPAKTGVEVERHETQP 449
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKK+EELGIGRPSTYAS L+VL+DR+YV V+ PE GR+++AFL +
Sbjct: 450 PPRYSEASLVKKMEELGIGRPSTYASILQVLKDRDYVRVEKNRFIPEESGRLLTAFLERF 509
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F Y FTA++E ELD+VS G +W+ +L +W F ++ L++
Sbjct: 510 FERYVGYDFTAELEEELDDVSGGRAQWQAVLERFWRDFKPRTGEVMEQKPSEITAALDEF 569
Query: 952 FGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK-TLYG 1005
G LF P+K R CP CG G L + +FG FI C+ +P C + K G
Sbjct: 570 LGPYLF---PDKSDGSDPRLCPNCGTGRLALRGGKFGP--FIACSNYPDCKFTRKFAQSG 624
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+ E D + P+ +G P S +V +SG +G Y+QLGE G KR+S+
Sbjct: 625 GNGEAD--------NGPETLGTDPESGLEVTKRSGRFGPYIQLGE---GSEAKRSSIPKD 673
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
+ L+ AL LL P +G HP+ G+PIM L R G + H A + + D+
Sbjct: 674 IPAEDFDLDYALRLLSLPREVGVHPESGKPIMAGLGRYGPYLLHDGKYAKLGGTAEIFDI 733
Query: 1126 TLEKAL 1131
+ A+
Sbjct: 734 GMNAAV 739
>gi|393723145|ref|ZP_10343072.1| DNA topoisomerase I subunit omega [Sphingomonas sp. PAMC 26605]
Length = 876
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 320/761 (42%), Positives = 434/761 (57%), Gaps = 50/761 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y VL SYGHVRDL + GSV PD DF+M WE + L
Sbjct: 3 LVIVESPAKAKTIEKYLGSDYRVLASYGHVRDLPPKDGSVNPDADFAMEWENYADKTKQL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I A+ LILA+DPDREGEAI+WH+ E+L+ + AL ++ V RV F+ IT+A++
Sbjct: 63 KAITDLAKTADRLILATDPDREGEAISWHVQEVLRNRKALPKD--VQRVTFNAITKATVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ RE+D +L+ AY ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LI RE
Sbjct: 121 EAMKHPRELDTDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLIVSRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+ QEYW+V A +++ D F A L F+ K+L++LSIG A +
Sbjct: 181 REIEAFRAQEYWSVTADMEQ------DGTPFQARLVQFEGKKLDRLSIGEEGTAMRAKAA 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V + R P P+ TSTLQQ+A+ KL FSA +TM++AQ LYE
Sbjct: 235 VESGAFTVQTVEVKPATRNPPPPFTTSTLQQEASRKLGFSADHTMRIAQGLYED------ 288
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G ITYMRTDG+ + A R + RY + + P++ PR Y K KNAQEAHEAIR
Sbjct: 289 ---GAITYMRTDGVQMDSSAISAARLAVANRYDASYVPDK-PRVYQTKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD + A D +LY LI+ R +A QM A + + V++ + R++
Sbjct: 345 PTDFGKDKAGGG-----DHARLYDLIFKRALASQMASARMERTTVEMLDGTGQTGLRATG 399
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F G+ A YE E ++ + E L L+ GD V +QH TQP
Sbjct: 400 QVVLFPGYLALYE----------EGSDDTQDEDARRLPRLREGDAPAKKGVSAEQHFTQP 449
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P R+SE SLVK+LEELGIGRPSTYAS +K L+DR YV V+ + E GR+V+AFL +
Sbjct: 450 PPRFSEASLVKRLEELGIGRPSTYASIIKTLKDREYVRVEKNRFFAEESGRLVTAFLERF 509
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + Y FT+ +E ELD VS G EW+ +L +W F T +V L+K
Sbjct: 510 FEKYVSYDFTSGLEDELDEVSGGRAEWQAVLEAFWRDFKPRTTEVMEQKPSEVTAELDKF 569
Query: 952 FGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDE 1009
LF + + R CP CG+G L + +FGA F+ C+ +P C Y + D
Sbjct: 570 LEPYLFPAQADGSDPRLCPNCGKGHLALRGGKFGA--FVACSNYPECKYTRRFGQPGADG 627
Query: 1010 EDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDV 1068
E VD P+ +G+ P + V KSG +G Y+Q+GE T R S KD+
Sbjct: 628 E-------GVDTGPEALGNDPVTGLPVERKSGRFGPYIQIGEGET-----RKMASIPKDI 675
Query: 1069 DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
+ LE AL+LL P +G HP+ G+PI + R G ++H
Sbjct: 676 GELDLEWALKLLSLPRTIGTHPETGEPITAAIGRYGPYLKH 716
>gi|85373789|ref|YP_457851.1| DNA topoisomerase I [Erythrobacter litoralis HTCC2594]
gi|84786872|gb|ABC63054.1| DNA topoisomeraseI [Erythrobacter litoralis HTCC2594]
Length = 845
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 333/808 (41%), Positives = 459/808 (56%), Gaps = 59/808 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++VL SYGHVRDL + GSVRPD+DF+M WE+
Sbjct: 3 LVIVESPAKAKTIEKYLGKDFKVLASYGHVRDLPPKDGSVRPDEDFAMDWELYRDKQKRF 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K I A A+ L+LA+DPDREGEAI+WH+ E+L ++ AL V RV F+ IT++++
Sbjct: 63 KEISDAAKQADRLVLATDPDREGEAISWHVQELLAKRKALPAK--VDRVTFNAITKSAVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ RE+D L+ AYLARRALDYL GF +SP+LWRKLPG +SAGRVQS AL LI DRE
Sbjct: 121 EAMGRPRELDQPLIDAYLARRALDYLFGFTLSPVLWRKLPGAKSAGRVQSVALRLIVDRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKP+EYW+V A + D F A + F K+L+++++G+ A +
Sbjct: 181 REIEAFKPEEYWSVLARFEH------DGTEFDARMVRFDGKKLDKMTLGNEGSALAAKAA 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+++ F V + + R P+ TSTLQQ+AA KL FSA++TM+ AQ LYE
Sbjct: 235 VDAGRFTVSDIETKPLKRNPAPPFTTSTLQQEAARKLGFSASHTMRCAQSLYE------- 287
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ + A R I ERY S + PE+ PR Y K KNAQEAHEAIR
Sbjct: 288 --AGAITYMRTDGVQMDGSAIAACRHAIEERYESAYLPEK-PRFYATKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+ R A SG D KLY LI+ R MA QM A + + + + + R++
Sbjct: 345 PTNFNRDSAG-SG----DEAKLYGLIFKRAMASQMATAQLERTTITLEDPTGQHALRATG 399
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V+F GF A Y++ K +E+ D +L ++ GD VE QH TQP
Sbjct: 400 QVVKFPGFFAVYQE----GFDDKSDEDED-----GLLPAMHKGDAPAKKGVEANQHFTQP 450
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P R+SE SLVK+LEELGIGRPSTYAST++ L+DR+YV ++ + E GR+++AFL +
Sbjct: 451 PPRFSEASLVKRLEELGIGRPSTYASTIQTLRDRDYVRMEKNRFFAEESGRLLTAFLERF 510
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F Y FTA ME ELD VS G E+K LL +W+ F +V ++L+
Sbjct: 511 FPNYVAYEFTAGMEEELDTVSDGREEYKELLAKFWADFKPKADEVMEKLPSEVTEVLDDY 570
Query: 952 FGDSLFASLPNKD----RSCPVCGE-----GTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
D LF P +D R+CP+C + G L + R+GA F+ C +P C Y +
Sbjct: 571 LSDYLFP--PTEDGTEPRACPLCRDEGREGGRLALRGGRYGA--FVACANYPECKYTRRF 626
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
N + + ++G HP + E + KSG +G YVQ+GE G KRAS+
Sbjct: 627 AQPGG--------NESAADDGIMGQHPETGEDIERKSGRFGPYVQMGE---GKEAKRASI 675
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
KD+D L+ A++LL P +G HP+ G+ I + R G +RH +
Sbjct: 676 P--KDLDDFDLDWAVKLLDLPRIVGAHPETGKEIEAAIGRYGPYLRHDGKYGKLQSTRDV 733
Query: 1123 NDVTLEKALEFLSGKDVRR-CGRPKGKP 1149
+V + A+ L+ R+ GR K +P
Sbjct: 734 FEVGMNAAVTILAEAANRKGGGRGKAEP 761
>gi|149186758|ref|ZP_01865069.1| DNA topoisomerase I [Erythrobacter sp. SD-21]
gi|148829666|gb|EDL48106.1| DNA topoisomerase I [Erythrobacter sp. SD-21]
Length = 853
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 335/806 (41%), Positives = 460/806 (57%), Gaps = 54/806 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++VL SYGHVRDL + GSVRPD+DF+M WE+ +
Sbjct: 3 LVIVESPAKAKTIEKYLGKDFKVLASYGHVRDLPPKDGSVRPDEDFAMDWELYRDKQSRF 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K I A+ L+LA+DPDREGEAI+WH+ E+L+++ AL E V RV F+ IT+ ++
Sbjct: 63 KEISDNAKKADRLVLATDPDREGEAISWHVRELLRKRKALPEK--VDRVTFNAITKQAVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++A R +D +L+ AYLARRALDYL GF +SP+LWR+LPG +SAGRVQS AL LI DRE
Sbjct: 121 DAMKAPRALDQDLIDAYLARRALDYLYGFTLSPVLWRRLPGAKSAGRVQSVALRLIVDRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
+EI+ FK EYW+V A L++ D F A L F K+L +L++G A ++
Sbjct: 181 IEIEHFKADEYWSVLAKLEQ------DGTQFDARLVKFDGKKLQKLTLGDKGSATAAKKA 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A F V + + R P+ TSTLQQ+AA KL FSA++TM+LAQ LYE
Sbjct: 235 VEDARFTVEDIETKPLKRSPAPPFTTSTLQQEAARKLGFSASHTMRLAQSLYE------- 287
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ + A R I +RY +++ P++ PR Y K KNAQEAHEAIR
Sbjct: 288 --AGHITYMRTDGVQMDGSAIDACRKAIADRYDAYYLPDK-PRFYSTKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD R+ A SG D KLY LI+ R MA QM A + + + + + R++
Sbjct: 345 PTDFRKDRAG-SG----DEAKLYDLIFKRAMASQMASANLERTTITLRDGTGKHELRATG 399
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V+F G+ A Y++ G EN+E+ +L ++ GD VE QH TQP
Sbjct: 400 QVVKFPGYFAVYQE---GRDEPSENDED------GVLPNVSKGDSPLKKAVEANQHFTQP 450
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P R+SE SLVK+LEELGIGRPSTYASTL+ L+DRNYV ++ + E GR+++AFL +
Sbjct: 451 PPRFSEASLVKRLEELGIGRPSTYASTLQTLRDRNYVRMEKNRFFAEESGRLLTAFLERF 510
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + FTA ME ELD VS G EWK LL ++W F +V ++L+
Sbjct: 511 FERYVSFDFTAGMEDELDTVSDGREEWKKLLAEFWKDFKPKTEEIMEKKPSEVTEVLDDF 570
Query: 952 FGDSLFASLPN-KD-RSCPVCGE-----GTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
D LF + KD R CP+C G L + R+GA F+ C +P C + +
Sbjct: 571 LSDYLFPERADGKDPRHCPLCETEGREGGRLALRGGRYGA--FVACANYPECKFTRQFAK 628
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSH 1064
D +D +P+ + V K+G +G Y+QLGE G KRAS+
Sbjct: 629 PGSDGDDGADDGVMGKDPE-------TGLPVERKTGRFGPYIQLGE---GKDAKRASIP- 677
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
KD+D LE AL+LL P +G HP+ G+ I + R G +RH A + +
Sbjct: 678 -KDLDDFDLEWALKLLSLPRIVGAHPETGKEIEANIGRYGPYLRHDGKYAKLTSTRDVFE 736
Query: 1125 VTLEKALEFLSGKDVRR-CGRPKGKP 1149
+ A+ L+ R+ GR K +P
Sbjct: 737 TGMNAAVSLLAEAANRKGGGRGKAEP 762
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 25/174 (14%)
Query: 978 KVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLL 1037
K RFG +G + + I K L D D E L+ + P+++G HP + +++
Sbjct: 655 KTGRFGPYIQLGEGKDAKRASIPKDL-DDFDLEWALKL---LSLPRIVGAHPETGKEIEA 710
Query: 1038 KSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVN------------ 1085
G YG Y++ + K A ++ +DV + A+ LL N
Sbjct: 711 NIGRYGPYLR-------HDGKYAKLTSTRDVFETGMNAAVSLLAEAANRKGGGRGKAEPI 763
Query: 1086 --LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGK 1137
LG HP G I + R G V T A++PK MKP DVT +A+E + +
Sbjct: 764 KTLGEHPTSGGEIKVMPGRYGPYVTDGTTNATIPKEMKPEDVTEAQAIELIDAR 817
>gi|296283693|ref|ZP_06861691.1| DNA topoisomerase I [Citromicrobium bathyomarinum JL354]
Length = 863
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 331/808 (40%), Positives = 462/808 (57%), Gaps = 61/808 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSA--AWT 409
+V+VES KAK I+ YLG ++VL SYGH+RDL + GSVRPD+DF+M WE+ S +
Sbjct: 3 LVIVESPAKAKTIEKYLGKDFKVLASYGHIRDLPPKDGSVRPDEDFAMDWEIYSDQRKRS 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+K+I A A+ L+LA+DPDREGEAI+WH+++ML+++ AL N V RV F+ IT+ +
Sbjct: 63 QVKAIADAAKNADRLVLATDPDREGEAISWHVLDMLKKRKALPTN--VDRVTFNAITKGA 120
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+ A++ R +D +L+ AYLARRALDYL GF +SP+LWRKLPG +SAGRVQS AL +I D
Sbjct: 121 VTEAMKKPRALDQDLIDAYLARRALDYLFGFTLSPVLWRKLPGAKSAGRVQSVALRIIVD 180
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FK +EYW++ A ++ D F A L K+L+++++G A +
Sbjct: 181 REREIEAFKAEEYWSIIANFEQ------DGTPFTARLVTLDGKKLDKMTLGDEGSAMAAK 234
Query: 590 QKINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
Q + F ++ + V++NP P + TSTLQQ+AA KL FSA++TM+ AQ LYE
Sbjct: 235 QAVEDGRF-TVEGIETKPVKRNPAPPFTTSTLQQEAARKLGFSASHTMRCAQSLYE---- 289
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
AG ITYMRTDG+ + A R I +RY + + PE+ PR Y K KNAQEAHE
Sbjct: 290 -----AGAITYMRTDGVSMDQSAIDACRDAITDRYSAEYRPEK-PRYYKTKAKNAQEAHE 343
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPTD R+ A SG D +LY LI+ R +A QM A + + V + R
Sbjct: 344 AIRPTDFRKDKAG-SG----DEARLYDLIFKRALASQMATAQLERTTVTLTEGSGQHSLR 398
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ V+F GF A Y+ E+ ++ E +L ++ GD VE QH
Sbjct: 399 ATGQVVKFPGFLAVYQ----------ESFDDKDDEDGGLLPHMREGDAPARKSVEANQHF 448
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RYSE SLVK+LEELGIGRPSTYAST++ L+DR YV ++ + E GR+++AFL
Sbjct: 449 TQPPPRYSEASLVKQLEELGIGRPSTYASTIQTLRDREYVRIEKNRFFAEESGRLLTAFL 508
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F Y FTA ME ELD+VS G EWK +L +W F + +L
Sbjct: 509 ERFFPTYVAYDFTAGMEEELDDVSGGRAEWKAILEAFWKDFKPKSDEVMEQKPSDITAVL 568
Query: 949 EKTFGDSLFASLPN-KD-RSCPVCGE-----GTLIFKVSRFGAGYFIGCNQHPRCNYIAK 1001
+ D LF + KD R CP+C + G L + RFGA F+ C +P C + +
Sbjct: 569 DTFLSDYLFPERADGKDPRFCPLCDQEGRAGGRLHLRGGRFGA--FVACENYPECKFTRR 626
Query: 1002 TLY-GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRA 1060
G D +E V E ++G P + V K+G +G Y+QLGE G KRA
Sbjct: 627 FAQPGSDADE--------VAENAVLGEDPDTGLPVERKTGRFGPYLQLGE---GKEAKRA 675
Query: 1061 SVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
S+ KDV + LE AL+LL P +G HP+ G I + R G +RH A +
Sbjct: 676 SIP--KDVPELDLEMALKLLSLPRIVGQHPETGNDIEASIGRYGPYLRHDGKYAKLTSTA 733
Query: 1121 KPNDVTLEKALEFLSGKDVRRCGRPKGK 1148
+ + A+ L+ + ++ GR + K
Sbjct: 734 DVFETGMNAAVTMLA-EAAQKGGRGRAK 760
>gi|254512126|ref|ZP_05124193.1| DNA topoisomerase I [Rhodobacteraceae bacterium KLH11]
gi|221535837|gb|EEE38825.1| DNA topoisomerase I [Rhodobacteraceae bacterium KLH11]
Length = 873
Score = 560 bits (1443), Expect = e-156, Method: Compositional matrix adjust.
Identities = 342/838 (40%), Positives = 465/838 (55%), Gaps = 81/838 (9%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV +D+F+M WEV + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGPDYTVLASYGHVRDLPPKDGSVDTEDEFAMKWEVGNDSRKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L ++ ++ ++ V+RV F+ IT+ ++
Sbjct: 63 KAIADALKEDNALILATDPDREGEAISWHLQEALTKRRSIKKDTPVSRVTFNAITKDAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+Q RE+D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMQNPREVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ FKP EYW+V A+ + ++ A L K+L++ +G+ T+A+ Q
Sbjct: 183 MEIEAFKPVEYWSVRALFETPRGQ-----TYEARLVTLAGKKLDKHDLGNATQAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I S V + R P++TSTLQQ+A+ K A + M++AQ+LYE
Sbjct: 238 ITSRALSVSSVEAKPAARNPSAPFMTSTLQQEASRKFGMGARHAMQVAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R I +RYG + P PR Y K KNAQEAHE IR
Sbjct: 291 --AGYITYMRTDGIDMAPEAVAAARDAIADRYGKEYVP-GSPRIYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ R L + DED KLY LIW RT+ACQM A + + V+I + D + R++
Sbjct: 348 PTDMSRDAKALK-VTDEDQRKLYDLIWKRTIACQMAAARLERTTVEITSDDGQVGLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK------ 825
V F GF YE E ++ + L + GDP + L+
Sbjct: 407 QVVMFDGFMRVYE----------EGRDDVVDDDDKRLPQIMQGDPARFAKTSLRDQFAKA 456
Query: 826 ------------------QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNY 867
QHHTQPP RY+E +LVK++EELGIGRPSTYAS + +QDR Y
Sbjct: 457 TGDDKQAVLSDNEAVLALQHHTQPPPRYTEATLVKRMEELGIGRPSTYASIVTTIQDREY 516
Query: 868 VTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWS 927
V L PE +GR+V+ FL ++F + Y FTA++E +LD+VSAG ++K LL +W
Sbjct: 517 VRKDKNRLIPEEKGRIVTIFLLNFFRQYVGYEFTANLEEQLDDVSAGDRDYKDLLGKFWR 576
Query: 928 RFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFG 983
FS+ L I +V L++ L+ P +D R CP CG G L K SR G
Sbjct: 577 DFSAAIGETSELRISEVLDKLDEALAPQLYP--PREDGSDPRICPKCGMGQLHLKTSRTG 634
Query: 984 AGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYG 1043
F+GC +P C Y + + G+ E D +L+G + +++ LKSG +G
Sbjct: 635 G--FVGCGNYPECTY-TRPIAGEGAEGDE----------RLLGED--AGDEIWLKSGRFG 679
Query: 1044 FYVQLGEDR-TGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLAR 1102
YVQ GE P RAS+ D + L AL LL P +G HP+ G I R
Sbjct: 680 PYVQRGEPTPENKKPPRASLPRGWSKDDMDLGKALTLLSLPRQIGEHPEGGM-ISSNFGR 738
Query: 1103 AGFSVRHRRTIASVP--KNMK-PNDV---TLEKALEFLSGKDVR--RCGRPKGKPKRE 1152
G + H+ + P N+K PNDV + +A+E L+ K R R KP +E
Sbjct: 739 FGPYLMHQLADEAKPVYANLKDPNDVFEIGMNRAVELLAEKRANPGRGRRAAAKPLKE 796
>gi|357975958|ref|ZP_09139929.1| DNA topoisomerase I subunit omega [Sphingomonas sp. KC8]
Length = 882
Score = 560 bits (1443), Expect = e-156, Method: Compositional matrix adjust.
Identities = 319/778 (41%), Positives = 452/778 (58%), Gaps = 48/778 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+VVVES KAK I+ YLG + VL SYGHVRDL A+ GSV PD+ F+M WE + L
Sbjct: 3 LVVVESPAKAKTIEKYLGPGHRVLASYGHVRDLPAKDGSVDPDNGFAMEWEAYADKTRQL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I A+ LILA+DPDREGEAI+WH+ E+L+++ AL ++ V RV F+ IT+A++
Sbjct: 63 KAITDEAKEADTLILATDPDREGEAISWHVQEVLKKRRALPKD--VQRVTFNAITKAAVL 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R +D +L+ AY ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ DRE
Sbjct: 121 DAMANPRALDEDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVDRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+PQEYW+V A +++ D F A L ++ ++++L+IG+ +A+ ++
Sbjct: 181 REIEAFRPQEYWSVAADMEQ------DGVPFVARLVRWRGNKIDRLTIGNGADAEAAKKD 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + F V + + R P P+ TSTLQQ+AA KL FSA++TM++AQ LYE
Sbjct: 235 VEAGRFSVASVETKPLTRNPPPPFTTSTLQQEAARKLGFSASHTMRVAQNLYED------ 288
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G ITYMRTDG+ + A R I RY + + P++ PR+Y K KNAQEAHEAIR
Sbjct: 289 ---GAITYMRTDGVQMDGSAISAARGAIANRYDASYVPDK-PRQYQAKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD + A SG D +LY LI+ R +A QM A + + V++ + S R++
Sbjct: 345 PTDFSKDKAG-SG----DHARLYDLIFKRALASQMASARLERTTVELLDGSGSHALRATG 399
Query: 772 SRVEFLGFQAAYEDV--DAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
V F G+ A YE+ D G+ K +D + L +K GD V +QH T
Sbjct: 400 QVVLFPGYLALYEEGRDDVGSSSGKHASADDGDDDGKRLPRMKEGDAPARKAVTAEQHFT 459
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RYSE SLVKK+EELGIGRPSTYA+TL+ L+DR YVT++ P+ GR+V++FL
Sbjct: 460 QPPPRYSEASLVKKMEELGIGRPSTYAATLQTLKDREYVTLEKNRFQPQESGRLVTSFLE 519
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F Y +TA +E LD+VS G +W+ +L +W F +V L+
Sbjct: 520 RFFERYVSYDYTAGLEDSLDDVSGGRADWQQVLEAFWRDFKPKTVEVMEQKPSEVTAALD 579
Query: 950 KTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
+ G LF P+K+ R CP C G L + R+GA FI C+ +P C + +
Sbjct: 580 EFLGPYLF---PDKEDGTDPRLCPACNAGRLSLRGGRYGA--FIACSNYPECKFTRRFAQ 634
Query: 1005 --GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
G +D DT P ++G P + +++ +SG +G YVQLGE + KR S+
Sbjct: 635 KGGAEDGGDT--------GPVVLGTDPETGQEITKRSGRFGPYVQLGEGKDA---KRGSI 683
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
+ L+ AL+LL P +G HP+ G+PI + R G + H A + M
Sbjct: 684 PKDVPGEDFGLDWALKLLSLPREVGLHPESGKPITASIGRYGPYLAHDGKYARLTSTM 741
>gi|341615115|ref|ZP_08701984.1| DNA topoisomerase I subunit omega [Citromicrobium sp. JLT1363]
Length = 864
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 330/807 (40%), Positives = 454/807 (56%), Gaps = 58/807 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSA--AWT 409
+V+VES KAK I+ YLG ++VL SYGH+RDL + GSVRPD+DF+M WE+ S +
Sbjct: 3 LVIVESPAKAKTIEKYLGKDFKVLASYGHIRDLPPKDGSVRPDEDFAMDWEIYSDQRKRS 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+K+I A A+ L+LA+DPDREGEAI+WH+++ML+++ AL N V RV F+ IT+ +
Sbjct: 63 QVKAIADAAKNADRLVLATDPDREGEAISWHVLDMLKKRKALPTN--VDRVTFNAITKGA 120
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+ A++ R +D +L+ AYLARRALDYL GF +SP+LWRKLPG +SAGRVQS AL +I D
Sbjct: 121 VTEAMKKPRALDQDLIDAYLARRALDYLFGFTLSPVLWRKLPGAKSAGRVQSVALRIIVD 180
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FK EYW++ A + D F A L K+L +L++G A +
Sbjct: 181 REREIEAFKADEYWSIVAQFEH------DGTGFEARLVTLDGKKLEKLTLGDEASAMAAK 234
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
Q + F V + + R P+ TSTLQQ+AA KL FSA++TM+ AQ LYE
Sbjct: 235 QAVEEGRFTVAGIETKPVKRNPAPPFTTSTLQQEAARKLGFSASHTMRCAQSLYE----- 289
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
AG ITYMRTDG+ + A R I +RY + + PE+ PR Y K KNAQEAHEA
Sbjct: 290 ----AGAITYMRTDGVSMDQSAIDACRDAITDRYSAEYRPEK-PRFYKTKAKNAQEAHEA 344
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPTD R+ A SG D +LY LI+ R +A QM A + + V + R+
Sbjct: 345 IRPTDFRKDKAG-SG----DEARLYDLIFKRALASQMATAQLERTTVTLTEGSGQHSLRA 399
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ V+F GF A Y++ ++ E +L ++ GD VE QH T
Sbjct: 400 TGQVVKFPGFLAVYQEG---------FDDKGDDEDGGLLPHMREGDAPARKSVEANQHFT 450
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RYSE SLVK+LEELGIGRPSTYAST++ L+DR YV ++ + E GR+++AFL
Sbjct: 451 QPPPRYSEASLVKQLEELGIGRPSTYASTIQTLRDREYVRIEKNRFFAEESGRLLTAFLE 510
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F Y FTA ME ELD+VS G EWK +L +W F + +L+
Sbjct: 511 RFFPTYVAYDFTAGMEEELDDVSGGRAEWKAILEAFWKDFKPKSDEVMEQKPSDITAVLD 570
Query: 950 KTFGDSLFASLPN-KD-RSCPVCGE-----GTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
D LF + KD R CP+C + G L + RFGA F+ C +P C + +
Sbjct: 571 TFLSDYLFPERADGKDPRFCPLCDQEGRAGGRLHLRGGRFGA--FVACENYPECKFTRRF 628
Query: 1003 LY-GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRAS 1061
G D +E V E ++G P + V K+G +G Y+QLGE G KRAS
Sbjct: 629 AQPGSDADE--------VAEDAVLGEDPETGLPVERKTGRFGPYLQLGE---GKEAKRAS 677
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ KD+ + LE AL+LL P +G HP+ G I + R G +RH A +
Sbjct: 678 IP--KDIGELDLEMALKLLSLPRIVGQHPETGNDIEASIGRYGPYLRHDGKYARLTSTAD 735
Query: 1122 PNDVTLEKALEFLSGKDVRRCGRPKGK 1148
D + A+ L+ + ++ GR + K
Sbjct: 736 VFDTGMNAAVTLLA-EAAQKGGRGRAK 761
>gi|338707101|ref|YP_004661302.1| DNA topoisomerase I [Zymomonas mobilis subsp. pomaceae ATCC 29192]
gi|336293905|gb|AEI37012.1| DNA topoisomerase I [Zymomonas mobilis subsp. pomaceae ATCC 29192]
Length = 959
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 306/690 (44%), Positives = 409/690 (59%), Gaps = 43/690 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+VVVES KAK I+ YLG Y+VL SYGHVRDL A+ GSV PD+ FSM+W + L
Sbjct: 3 LVVVESPAKAKTIEKYLGTGYQVLASYGHVRDLPAKDGSVDPDNGFSMIWSNYADKAHRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I+ A A++LILA+DPDREGEAI+WH++E+L+ D L + V RV F+ IT+ ++
Sbjct: 63 KAIEDAAKTADSLILATDPDREGEAISWHVLELLKAHDLLPPH--VERVTFNAITKPAVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ RE+D +L+ AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ DRE
Sbjct: 121 EAMAHPRELDTDLINAYLARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVDRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKPQEYW+VEA ++ D +F L H++ +L++LSI + EA+ +
Sbjct: 181 QEIESFKPQEYWSVEAAMEA------DNIAFTTRLIHWRGHKLDKLSISTKEEAEAAKAD 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + F V K + R P+ TSTLQQ+AA KL F+A++TM+LAQ LYE
Sbjct: 235 VEAGQFTVSKVETKPFSRNPQPPFTTSTLQQEAARKLGFAASHTMRLAQNLYE------- 287
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTDG+ + +A E R I RY + P++ PR+Y K KNAQEAHEAIR
Sbjct: 288 --EGLITYMRTDGVQMDGDAITEARKAITHRYEPSYVPDK-PRQYQVKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD R A D KLY LIW R MA QM A + + +D+ + + R +
Sbjct: 345 PTDFSRDQAATG-----DQAKLYQLIWIRAMASQMASAKLERTTIDLADQTGQHMLRVTG 399
Query: 772 SRVEFLGFQAAYE---DVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
V F GF A YE D + +E+ + + L L+ GD V QH
Sbjct: 400 QVVLFPGFLALYEEGRDESQNTASDRGDEKQESKDNKIRLPLLREGDSPDKKAVSADQHF 459
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RYSE SLVKK+EELGIGRPSTYAS L+VL+DR+YVTV+ P GR+V+AFL
Sbjct: 460 TQPPPRYSEASLVKKMEELGIGRPSTYASVLQVLKDRSYVTVERNHFIPSEGGRLVTAFL 519
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F Y FTA +E LD++S G W+ +L +W F + +V L
Sbjct: 520 ERFFLRYVSYDFTAGLEESLDDISGGRANWQKVLEAFWHDFKPKTSEVMEQKPSEVTAAL 579
Query: 949 EKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
++ G LF P+K R CP+C G L + RFGA FI C+ +P C Y
Sbjct: 580 DEFLGPWLF---PDKGDGHDPRECPICHTGRLALRGGRFGA--FIACSNYPECKYTRGFG 634
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHPASKE 1033
G+DD++D +EP ++G P + E
Sbjct: 635 QGEDDDKDD-------NEPVVLGWMPVTDE 657
Score = 47.8 bits (112), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 19/170 (11%)
Query: 981 RFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSG 1040
RFG +G + + I K + + E D + P+ +G HP S + ++ +G
Sbjct: 724 RFGPYIQLGEGKEAKRVSIPKDV--NPKEVDLALALKLLALPREVGLHPESGKMIIAGTG 781
Query: 1041 PYGFYVQLGEDRTGYLPKRASVSHI--KDVDS--ITLEDALE--------LLRYPVN-LG 1087
YG Y+ G + +S + D++S + L +A E R P+ LG
Sbjct: 782 RYGPYLNC----DGQYARLSSTEELLGTDINSAVVKLAEAAENKGRSRGTRTREPLKVLG 837
Query: 1088 NHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGK 1137
N P +P+ + R G V T AS+PK+ P +TLE AL L +
Sbjct: 838 NSPVTEKPVQIMDGRYGPYVNDGETNASLPKDSDPESLTLEDALALLEAR 887
>gi|347528630|ref|YP_004835377.1| DNA topoisomerase I [Sphingobium sp. SYK-6]
gi|345137311|dbj|BAK66920.1| DNA topoisomerase I [Sphingobium sp. SYK-6]
Length = 867
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 320/763 (41%), Positives = 440/763 (57%), Gaps = 43/763 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y VL SYGHVRDL + GSV P+ F+M WE L
Sbjct: 3 LVIVESPAKAKTIEKYLGGDYRVLASYGHVRDLPPKDGSVDPEHGFAMAWENYGDKARQL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I A+ LILA+DPDREGEAI+WH+ E+L+ + AL E V RV F+ IT+A+I
Sbjct: 63 KAITDEAKKADELILATDPDREGEAISWHVQEVLRAKKALPER--VERVTFNAITKATIT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R +D +L+ AY ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL LI +RE
Sbjct: 121 EAMKHPRALDDDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLIVERE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F QEYW+V A+L++ F A L ++ ++L++LSIG +A +
Sbjct: 181 REIEAFVSQEYWSVTALLEQGGQR------FDARLVRWRGEKLDRLSIGKEGDALAAKAD 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + F V + R P P+ TSTLQQ+AA KL SA+ TM++AQ+LYE
Sbjct: 235 VEAGRFTVSSVETKPATRNPPPPFTTSTLQQEAARKLGLSASETMRVAQQLYED------ 288
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G ITYMRTDG+ + + A R+ I +RY + P++ PR Y K KNAQEAHEAIR
Sbjct: 289 ---GAITYMRTDGVQMDESAISAARNAIAKRYDGGYLPDK-PRHYQTKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD R A SG+ KLY LI+ R +A QM A + + V++ + V R++
Sbjct: 345 PTDFSRESAG-SGV----HAKLYDLIFKRALASQMASARLERTAVELTDGTGQHVLRATG 399
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F GF A YE+ + ++ + E +L +LK GD +V QH TQP
Sbjct: 400 QVVLFPGFLALYEEGRDDPVG-RQGAGDGEDEESRLLPALKAGDQPAKKDVRADQHFTQP 458
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVK+LEELGIGRPSTYAST++ L+DR+YV ++ + E GR+V+AFL +
Sbjct: 459 PPRYSEASLVKRLEELGIGRPSTYASTIQTLKDRDYVRIEKNRFFAEESGRLVTAFLERF 518
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F Y FTA +E ELD +S G +W+ +L +W F ++ L++
Sbjct: 519 FERYVSYDFTAGLEEELDEISGGRAQWQQVLEAFWRDFKPKTAEIMEQKPSEITAALDEY 578
Query: 952 FGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
LF P+K R CP+C +G L + R+GA FI C+ +P C Y K +G
Sbjct: 579 LAPMLF---PDKGDGSDPRLCPLCHDGRLSLRGGRYGA--FIACSNYPECRYTRK--FGQ 631
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
D N + +G HP + E +L KSG +G YV++G +G KRAS+
Sbjct: 632 PGGADGDAAGGNEE----LGTHPETGEPILRKSGRFGPYVEMG---SGKEAKRASIPKDL 684
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
+TL+ A LL P +G+HP+ G+PI L R G + H
Sbjct: 685 PNGELTLDWATRLLSLPRTIGDHPETGKPITASLGRYGPYLAH 727
>gi|291612476|ref|YP_003522633.1| DNA topoisomerase I [Sideroxydans lithotrophicus ES-1]
gi|291582588|gb|ADE10246.1| DNA topoisomerase I [Sideroxydans lithotrophicus ES-1]
Length = 876
Score = 557 bits (1436), Expect = e-155, Method: Compositional matrix adjust.
Identities = 327/790 (41%), Positives = 466/790 (58%), Gaps = 54/790 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++++VES KAK ++ YLG +EVL SYGHVRDL ++G+V PDD+F+M +E + H
Sbjct: 4 NLLIVESPAKAKTLKKYLGKDFEVLASYGHVRDLIPKTGAVDPDDNFAMKYETIARNAKH 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +I A + A+++ LA DPDREGEAIAWHI E+L+ + AL + T+ RVVF+EIT++++
Sbjct: 64 VDAIAKAAAEADHIFLAPDPDREGEAIAWHISELLKGKRAL-KGKTMQRVVFYEITQSAV 122
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A+ REI LV A ARRALDYL+GFN+SPLLWRK+ SAGRVQS AL LI +R
Sbjct: 123 REAVAHPREISIPLVNAQQARRALDYLVGFNLSPLLWRKIRPGLSAGRVQSPALRLIVER 182
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI++FK QEYW+V LD ++ ++ F A L FQ KR+ QL+IGS E I
Sbjct: 183 ELEIEKFKSQEYWSVH--LDSQK----NSIPFKAKLYQFQGKRMEQLTIGSQAEYDAIHA 236
Query: 591 KINSANF--QVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
K+ A +V++ K+ R P+ TSTLQQ+A KL ++ TM+ AQ LYEGV +
Sbjct: 237 KLVDAKLPPKVVRVEKKGKQRSPAAPFTTSTLQQEAVRKLGMTSDRTMRTAQSLYEGVDI 296
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G GLITYMRTD +++++EA E+R I + + + P + P Y K KNAQEAHE
Sbjct: 297 -GGQTIGLITYMRTDSVNLANEAVAEMREYIKDNFAGDYLPVKQP-VYKSKSKNAQEAHE 354
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT I R P L L+ D ++LY +IW RT+A QM PA + VDI + + +FR
Sbjct: 355 AIRPTSILRTPDSLRDHLNIDQMRLYEMIWKRTLASQMSPARFDTVSVDIRLSSDDTLFR 414
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+S + F GF Y E+ ++ E A L L GD L + ++ +QH
Sbjct: 415 ASGQTLVFPGFIGVY----------MEDVDDAEEEDSAKLPPLVEGDVLPVDKLYGEQHF 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP R+SE SLVK LEE GIGRPSTYA+ + LQ R Y T+ + P GR+V FL
Sbjct: 465 TQPPPRFSEASLVKALEEYGIGRPSTYATIISTLQAREYATLDKKRFMPTDVGRVVIKFL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F+ DY FTA++E ELD++S G +W +L ++W F+ + + + E +L
Sbjct: 525 NEHFTRYVDYGFTANLEDELDDISEGKRDWIPVLNEFWKGFNKLISEKKDVDRPGTE-IL 583
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAKTLYGDD 1007
E+T CP CG+ R G G FIGC +P C+Y ++L G++
Sbjct: 584 EET---------------CPKCGKPL----SKRLGKRGSFIGCTGYPECDY-TRSLGGEE 623
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTG--YLPKRASVSHI 1065
D ++ K +G HP + + VLL GPYG YVQLGE G PKR S
Sbjct: 624 DAGESR---------KELGQHPDTNQLVLLLRGPYGPYVQLGEMIEGEKTKPKRVSWPKE 674
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDV 1125
++ L AL+LL P +G HP+ G+ +++ + R G + H S+P+ D+
Sbjct: 675 LPLEQADLPSALKLLSLPREVGAHPETGKKVIVNIGRFGPYIGHDGKFKSIPRTDSIFDI 734
Query: 1126 TLEKALEFLS 1135
L++++E L+
Sbjct: 735 GLDRSVELLA 744
>gi|148556727|ref|YP_001264309.1| DNA topoisomerase I [Sphingomonas wittichii RW1]
gi|148501917|gb|ABQ70171.1| DNA topoisomerase I [Sphingomonas wittichii RW1]
Length = 852
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 324/768 (42%), Positives = 447/768 (58%), Gaps = 51/768 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+VVVES KAK I+ YLG + VL SYGHVRDL A+ GSV PD+ F+M WE + L
Sbjct: 3 LVVVESPAKAKTIEKYLGPGHRVLASYGHVRDLPAKDGSVDPDNGFAMEWEAYADKSRQL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I GA+ LILA+DPDREGEAI+WH+ E+L ++ L ++ V RV F+ IT+A++
Sbjct: 63 KAIADEAKGADTLILATDPDREGEAISWHVKEVLGKRRVLPKD--VRRVTFNAITKAAVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D +L+ AY ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ DRE
Sbjct: 121 EAMANPRDLDEDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVDRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK QEYW+V A ++ D F L ++ +++++L+IG+ +A+ +
Sbjct: 181 REIELFKAQEYWSVTADME------YDGIGFLTRLVRWKGQKIDRLTIGNGKDAEAAKAD 234
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + F V + + R P P+ TSTLQQ+AA KL FSA++TM++AQ LYE
Sbjct: 235 VEAGRFTVASVETKPLTRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQALYED------ 288
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
G ITYMRTDG+ + A R I RY + + P++ PR+Y K KNAQEAHEAIR
Sbjct: 289 ---GAITYMRTDGVQMDGSAISAARGAIANRYDASYVPDK-PRQYSAKAKNAQEAHEAIR 344
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD R A SG D +LY LI+ R +A QM A + + VD+ + R++
Sbjct: 345 PTDFSRDRAG-SG----DHGRLYDLIFKRALASQMASARLERTTVDLVDGTGQNALRATG 399
Query: 772 SRVEFLGFQAAYED-VDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
V F G+ A YE+ D + ++ D E L +K GD +V+ +QH TQ
Sbjct: 400 QVVLFPGYLALYEEGRDDPNPQGQQAGGGDADEDSRRLPRMKEGDSPAKKKVDAEQHFTQ 459
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVKK+EELGIGRPSTYAS L+ L+DR+YVTV+ P GR+V++FL
Sbjct: 460 PPPRYSEASLVKKMEELGIGRPSTYASILQTLKDRDYVTVEKNRFTPNESGRLVTSFLER 519
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F Y +TA +E ELD+VS G W+ +L +W F +V L++
Sbjct: 520 FFERYVSYDYTAHLEEELDDVSGGRAGWQQVLEAFWKDFKPKTAEVMDQKPSEVTAALDE 579
Query: 951 TFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
LF P+K R CPVC EG L + RFGA FI C+ +P C + +
Sbjct: 580 FLAPYLF---PDKGDGTDPRLCPVCQEGRLSLRGGRFGA--FIACSNYPECKFTRRFAQA 634
Query: 1006 D--DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
+D DT P +IG PA+ +V ++G +G Y+QLG+ G KR+S+
Sbjct: 635 GAANDGADT--------GPVVIGTDPATGLEVSKRAGRFGPYIQLGD---GKDAKRSSIP 683
Query: 1064 HIKDV--DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
KDV D + L AL+LL P +G HP+ G PI + R G + H
Sbjct: 684 --KDVLGDDLDLGWALKLLSLPRLIGPHPETGHPITASIGRFGPYLAH 729
>gi|126729118|ref|ZP_01744932.1| DNA topoisomerase I [Sagittula stellata E-37]
gi|126710108|gb|EBA09160.1| DNA topoisomerase I [Sagittula stellata E-37]
Length = 889
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 333/824 (40%), Positives = 450/824 (54%), Gaps = 91/824 (11%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV D DF M WEV + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPPKDGSVDTDHDFEMKWEVANDSRKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL + LILA+DPDREGEAI+WH+ E L ++ ++ + V+RV F+ IT+A++
Sbjct: 63 AAIAEALKTDDKLILATDPDREGEAISWHLKEALTKRRSIKKTTEVSRVTFNAITKAAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R+IDA LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMKNPRDIDAPLVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F P+EYW V+A L +F A L K+L++ + + T+A+
Sbjct: 183 MEIEAFNPREYWQVKAQLATPRGQ-----TFEARLVSLAGKKLDRYDLENVTQAEMAVDA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ +V+ + R P++TSTLQQ+A+ K A M AQ+LYE
Sbjct: 238 VAKRALKVLSVEAKPASRNPSAPFMTSTLQQEASRKFGMGAKAAMNAAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R I +RYG + P PR Y K KNAQEAHE IR
Sbjct: 291 --AGHITYMRTDGIDMAPEAVSACRDAIADRYGKDYVP-SSPRVYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ + L L + D KLY LIW RT+ACQM+ A + + V+IG+ D + R++
Sbjct: 348 PTDMTKDAESLR-LSESDQRKLYDLIWKRTLACQMEAARLERTTVEIGSDDGQVGLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH--- 828
V F GF YE+ R + E++D+ L + GDP +K H
Sbjct: 407 QVVLFDGFLKVYEEG-----RDEPAEDDDKR-----LPQIMQGDPAKFEAGAMKSEHAKA 456
Query: 829 -------------------------TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQ 863
T PP RY+E +LVKK+EELGIGRPSTYAS + +Q
Sbjct: 457 MEKGTDRGKPAVLSGDGATLGTQSFTNPPPRYTEATLVKKMEELGIGRPSTYASVITTIQ 516
Query: 864 DRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLV 923
DR YV + L+PE +GR+V+ FL ++F +Y FTA +E ELD VSAG ++K LL
Sbjct: 517 DREYVRKEQNRLFPEDKGRIVTIFLLNFFKRYVEYDFTAALEDELDQVSAGAEDYKELLA 576
Query: 924 DYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKD-----RSCPVCGEGTLIFK 978
+W FS+ L I +V +L++ L+ P +D R CP CG+G L K
Sbjct: 577 KFWRDFSAAIAETSDLRISEVLDVLDEALAPQLY---PPRDDGSDPRICPKCGQGRLHLK 633
Query: 979 VSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLK 1038
SR G F+GC +P C Y + + G+ E E KL+G +++ LK
Sbjct: 634 TSRTGG--FVGCGNYPECTY-TRPIAGEGAE----------GEEKLLGED--QGDEIWLK 678
Query: 1039 SGPYGFYVQLGEDR-TGYLPKRASVSHIK-------DVDSITLEDALELLRYPVNLGNHP 1090
+G +G YVQ GE P RAS+ D +TLE AL LL P +G HP
Sbjct: 679 AGRFGPYVQRGEPTPENKKPPRASLPKKGGAYLPGWDPADMTLEKALTLLTMPREVGMHP 738
Query: 1091 KDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFL 1134
DG + L R G + H+ +P KP V L++ E
Sbjct: 739 -DGGVVSANLGRFGPYIMHQ-----LPDEEKPVYVNLKEFQEVF 776
>gi|255261743|ref|ZP_05341085.1| DNA topoisomerase I [Thalassiobium sp. R2A62]
gi|255104078|gb|EET46752.1| DNA topoisomerase I [Thalassiobium sp. R2A62]
Length = 881
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 328/814 (40%), Positives = 464/814 (57%), Gaps = 48/814 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV D DF M WE+ S + H+
Sbjct: 3 VVVVESPAKAKTINQYLGSDYTVLASYGHVRDLPPKDGSVDTDADFDMKWEIASDSKKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL LILA+DPDREGEAI+WH+ E L + ++ ++ V+RVVF+ IT++++
Sbjct: 63 KAIADALKEDNELILATDPDREGEAISWHLQEALTLRKSIKKDTPVSRVVFNAITKSAVT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R +D LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L ++ +RE
Sbjct: 123 EAMKNPRAVDQPLVDAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVTLRILVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F+ EYW+V+A L F A LT K+L++ + + T A+ Q
Sbjct: 183 MEIEAFRNVEYWSVKAALGSARGQ-----DFEARLTVLGGKKLDKFDLQNETAAELAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I+S + V + R P++TSTLQQ+A+ K A TM AQ+LYE
Sbjct: 238 IHSRDMTVTSVEAKPATRNPSAPFMTSTLQQEASRKFGMGARQTMSTAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R I ++G + P + PR Y K KNAQEAHE IR
Sbjct: 291 --AGHITYMRTDGIDMAPEAVHAARDAITNKFGKDYVP-DSPRLYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ + + + D D KLY LI+ RT++ QM A + + +IG+AD +V R++
Sbjct: 348 PTDLAK-DTESAKISDADQRKLYDLIYKRTISSQMAAARLERTTAEIGSADGQVVLRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
+ F GF YE+ G ++++ R L L G+ + + +QH TQP
Sbjct: 407 QVMLFDGFLRVYEE---GRDDAVVDDDDKR------LPQLSQGESVDKKSIMPEQHFTQP 457
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVK++EELGIGRPSTYAS + +QDR YV + L PE +GR+V+AFL +Y
Sbjct: 458 PPRYTEATLVKRMEELGIGRPSTYASIVTTIQDREYVRKEKNRLIPEDKGRLVTAFLENY 517
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + Y FTAD+E +LD+VSAG ++K +L +W FS+ L I +V + + +
Sbjct: 518 FRKYIGYGFTADLEGQLDDVSAGEADYKDVLGRFWRDFSAAIGETSELRITEVLEKINEV 577
Query: 952 FGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
LF P +D R CP C EG L + +R G G FIGC+++P C Y +G
Sbjct: 578 LEPHLFP--PTEDGSDPRLCPNCNEGRLSMRTARSG-GAFIGCSRYPDCRYT--RAFGPP 632
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHIK 1066
E + E K++G + +K+ + G +G Y Q GE P R SV
Sbjct: 633 GTE---PESAIPPEGKILGED--AGDKIWIHKGRFGPYAQRGEVTEDNKKPPRQSVPADW 687
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIA---SVPKNMKPN 1123
+ +TLE A++LL P LG HP+DG + + R G ++H + + N++
Sbjct: 688 APEDVTLETAVKLLALPRELGPHPEDGVTVWANIGRYGPYLKHAESTSHKGGTNANLETL 747
Query: 1124 D----VTLEKALEFLSGKDVRRCGR-PKGKPKRE 1152
+ V + +A++ L+ K R GR KP RE
Sbjct: 748 EDVWTVGMNRAVQLLAEKVASRGGRGAAAKPIRE 781
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ +G HP V G YG Y++ E + A++ ++DV ++ + A++LL
Sbjct: 704 PRELGPHPEDGVTVWANIGRYGPYLKHAESTSHKGGTNANLETLEDVWTVGMNRAVQLLA 763
Query: 1082 YPV--------------NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
V LG HP+ G P+ + + G V+ + A+VPK + + VT+
Sbjct: 764 EKVASRGGRGAAAKPIRELGEHPEAGGPVNIMDGKYGIYVKWEKINATVPKETEADAVTM 823
Query: 1128 EKALEFLS 1135
E A+E ++
Sbjct: 824 EMAVELIN 831
>gi|399059713|ref|ZP_10745266.1| DNA topoisomerase I, bacterial [Novosphingobium sp. AP12]
gi|398039026|gb|EJL32171.1| DNA topoisomerase I, bacterial [Novosphingobium sp. AP12]
Length = 862
Score = 551 bits (1419), Expect = e-153, Method: Compositional matrix adjust.
Identities = 331/789 (41%), Positives = 461/789 (58%), Gaps = 53/789 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+VL SYGHVRDL + GSVRPD++F+M WE+ +
Sbjct: 3 LVIVESPAKAKTIEKYLGKDYKVLASYGHVRDLPPKDGSVRPDEEFAMDWELYGDKQRQV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I A A+ LILA+DPDREGEAI+WH+ E+L ++ AL ++ V RV F+ IT+ ++
Sbjct: 63 KAITDAAKTADRLILATDPDREGEAISWHVRELLAKRKALPKD--VQRVTFNAITKDTVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ RE+D +L+ AYLARRALDYL GF +SP+LWRKLPG +SAGRVQS AL LI DRE
Sbjct: 121 KAMTQPRELDQDLIDAYLARRALDYLFGFTLSPVLWRKLPGAKSAGRVQSVALRLIVDRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK QEYW+V A + +H D F A L F+ ++L++LS+G A +
Sbjct: 181 REIEAFKAQEYWSVAAQM----AH--DGTDFTAKLVTFEGQKLDRLSLGEEGIAMRAKAA 234
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ F+V + + R+NP P + TSTLQQ+AA KL FSA+ M++AQ LYE
Sbjct: 235 VEQGAFKV-EGVETKPHRRNPQPPFTTSTLQQEAARKLGFSASQAMRVAQSLYE------ 287
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
AG ITYMRTDG+ + A R+ I +R+ H+ PE+ PR Y K KNAQEAHEAI
Sbjct: 288 ---AGAITYMRTDGVQMDSSAISAARAAIADRFSGHYVPEK-PRHYETKAKNAQEAHEAI 343
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD + SG D +LY LI+ R MA QM A + + V + + R++
Sbjct: 344 RPTDFTK-DRYGSG----DEARLYDLIFKRAMASQMASAALERTTVTLRDGTGRNELRAT 398
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
+ V+F GF A YE+ ++N+ +D EA +L +K GD +V +QH TQ
Sbjct: 399 GTVVKFPGFLAVYEEG-------RDNKADDDDEA-GLLPFMKAGDMPAKKDVTAEQHFTQ 450
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP R+SE SLVK+LEELGIGRPSTYAST++V++DRNYV + + E GR++++FL
Sbjct: 451 PPPRFSEASLVKRLEELGIGRPSTYASTIQVIKDRNYVRTEKNRFFAEESGRLLTSFLER 510
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF Y FTA ME +LDNVS G EWK LL ++W F +V + L++
Sbjct: 511 YFDRYVAYDFTAGMEDQLDNVSGGREEWKVLLANFWRDFKPKSDEVMDKKPSEVTEALDE 570
Query: 951 TFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
D LF P D R CP C +G L + R+GA F+ C+ +P C + K
Sbjct: 571 FLSDYLFP--PKADGTDPRLCPKCEQGRLSLRGGRYGA--FVACSNYPECKFTRKFA--- 623
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+ + +G PA+ ++ ++G +G Y+QLGE G KRAS+ K
Sbjct: 624 ----QPGGAADGAGDDESLGKDPATDLDIVRRTGRFGPYIQLGE---GKEAKRASIP--K 674
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
D+D + LE A++LL P +G HP+ G+ I + R G + H A + + D
Sbjct: 675 DIDELNLEWAIKLLSLPRAIGPHPESGKDITASIGRYGPYLAHDGKYAKLRSTAEVFDTG 734
Query: 1127 LEKALEFLS 1135
+ A+ L+
Sbjct: 735 MNAAVSMLA 743
>gi|254796948|ref|YP_003081785.1| DNA topoisomerase I [Neorickettsia risticii str. Illinois]
gi|254590195|gb|ACT69557.1| DNA topoisomerase I [Neorickettsia risticii str. Illinois]
Length = 827
Score = 551 bits (1419), Expect = e-153, Method: Compositional matrix adjust.
Identities = 314/787 (39%), Positives = 445/787 (56%), Gaps = 49/787 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+V++VES TK K I YLG + VL S+GHVR L + GSV D F M++++ T
Sbjct: 2 NVLIVESPTKGKAIAQYLGKDFRVLSSFGHVRALPNKKGSVDVTDSFEMLYKLTDTGETV 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ + + A L LA+DPDREGEAI+WH+VE+ ++ D L +N V RVVFHEIT+ ++
Sbjct: 62 VPQLIKDVKNATALYLATDPDREGEAISWHLVEVFKENDVLPKN--VHRVVFHEITKTAV 119
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A+ + R+ID NLV+A R+ALDYL+GF+ISP+LW+KLPG +SAGRVQS AL ++CDR
Sbjct: 120 QNAIASPRKIDENLVRAQRLRQALDYLVGFSISPVLWKKLPGSKSAGRVQSVALRILCDR 179
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F P+EYW V + E P L+H ++L ++SI EA+ I +
Sbjct: 180 ENEIGLFTPEEYWIVSVNMTDGEG-----LVIPTQLSHINGEKLERMSIRGAEEAEKIVE 234
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+I F V + K+ + +K P+ITST+QQ A+ L FS TM LAQKLYEG+++
Sbjct: 235 EIRELPFLVEEIKKKELKQKPSPPFITSTMQQTASTVLGFSVKKTMSLAQKLYEGIEI-G 293
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTD H+S E+ IR I +++G + PE P + KKVKNAQEAHEAI
Sbjct: 294 GAIEGLITYMRTDATHLSVESVDAIREFIQKKFGQEYLPE-SPVLFKKKVKNAQEAHEAI 352
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT I R P + L D KLY LIW R +ACQM A + + DE +S
Sbjct: 353 RPTSIFRTPEEIESYLTPDQYKLYRLIWERALACQMSDAITSSQNIVFISQDEKFKTSAS 412
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF AA+ +N + K G + +G+V Q+ T+
Sbjct: 413 ASLLIFDGFNAAFS---------HGKNKNKNQGVIDFIKKHKEGAQVKVGDVLPTQNFTE 463
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE LVK LEELGIGRPSTYA+ + VLQ+R Y ++ ++ PE RGR+VS FL H
Sbjct: 464 PPHRYSEAGLVKHLEELGIGRPSTYATVVSVLQERGYASIVNKSFIPENRGRLVSEFLVH 523
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+FS+ +Y FTA+ME LD V+ G W ++ D+W F S + + I +V +
Sbjct: 524 FFSKYVEYHFTAEMEDRLDKVADGTIFWLDVIQDFWDSFHSNVEEVEKVPITEVLAFVNG 583
Query: 951 TFGDSLFASLPNK-DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDE 1009
S K CP C +G + VSR+G F+GC +P C +I + DDD
Sbjct: 584 ALAKQKLVSAEVKVGDKCPKCEKGYMHLSVSRYGV--FLGCTNYPVCRFIVNSYSTDDDT 641
Query: 1010 EDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVD 1069
E PK I + + L GPYG Y++ Y K +S+ KDVD
Sbjct: 642 E----------YPKQIA------QDISLHKGPYGIYLK-------YKGKNSSIP--KDVD 676
Query: 1070 SITLED--ALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
+++++ A ++ P LG HP DG+ I + L G + ++ + + +++TL
Sbjct: 677 PVSIDEEFAHKIASLPKILGKHPADGKEIKMGLGPYGLYLFWNAKYYNL-QFSQMDEMTL 735
Query: 1128 EKALEFL 1134
+KA++F+
Sbjct: 736 DKAVQFI 742
>gi|114770408|ref|ZP_01447946.1| DNA topoisomerase I [Rhodobacterales bacterium HTCC2255]
gi|114549245|gb|EAU52128.1| DNA topoisomerase I [alpha proteobacterium HTCC2255]
Length = 866
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 331/803 (41%), Positives = 448/803 (55%), Gaps = 43/803 (5%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL + GSV D++F M WEV S + HL
Sbjct: 3 VVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPPKDGSVDIDNEFEMKWEVASDSKKHL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I AL NLILA+DPDREGEAI+WH+ E L+++ + ++ V+RVVF+ IT+ ++
Sbjct: 63 KAIADALKEDNNLILATDPDREGEAISWHLEEALRKRKVIKKDTPVSRVVFNAITKNAVS 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+Q R +D LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 123 EAMQNPRAVDMELVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVCLRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ FKP+EYW+V+++L F + L K+L++ I + A Q
Sbjct: 183 MEIEIFKPREYWSVKSLLKTPRGK-----EFESSLRILGGKKLDKFDINNEVSADLAVQA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+NS V + R P++TSTLQQ+A+ K F A TM AQ+LYE
Sbjct: 238 VNSRKLTVTSVEAKPANRNPSAPFMTSTLQQEASRKFGFGARQTMSTAQRLYE------- 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R I RYGS+ P E PR Y K KNAQEAHE IR
Sbjct: 291 --AGHITYMRTDGIDMAPEAVTAARDAIGARYGSNFIPSE-PRIYKNKAKNAQEAHECIR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT++ + A L+ D KLY LIW RT+A QM A + + +DI + D I RS+
Sbjct: 348 PTNM-EISAEDLNRLEPDQRKLYDLIWKRTLASQMASAKMERTTIDISSEDNQIGLRSTG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
+ F GF YE+ + ++ND+ +L L GD + V QH TQP
Sbjct: 407 QVIIFDGFLKVYEEGRDDEVV----DDNDK-----LLPQLTVGDSIEKILVNPNQHFTQP 457
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVK++EELGIGRPSTYAS + +Q R YV + L E +GR+V AFL +Y
Sbjct: 458 PPRYTEATLVKRMEELGIGRPSTYASIVTTIQTREYVRREGNRLIAEDKGRLVIAFLENY 517
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + Y++TA +E ELD+VSAG +K +L +W FS+ L I +V + +
Sbjct: 518 FRQYVGYNYTAGLEEELDSVSAGKENYKSVLGRFWRDFSAAINETAELRITEVLEKINDV 577
Query: 952 FGDSLFASLP--NKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDE 1009
LF + R CP C G L + +R G G FIGC+ +P C Y +G
Sbjct: 578 LEPHLFPTTEKGGDPRLCPNCEIGRLSMRTARSG-GAFIGCSNYPECRYT--RAFGPPGA 634
Query: 1010 EDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHIKDV 1068
ED+ + E K +G +++ G +G YVQ GE P R S+
Sbjct: 635 EDS---SGIPPEGKNLGEDEG--DQIYAFKGRFGPYVQRGEVSDDNKKPPRQSIPKDWPP 689
Query: 1069 DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRR-------TIASVPKNMK 1121
+ LE AL LL P +G HP+DG + + R G ++H T A++ +
Sbjct: 690 ADVDLEKALRLLSLPRQIGPHPEDGIMVWSNIGRYGPYLKHSASTSDRGGTNANLADIEE 749
Query: 1122 PNDVTLEKALEFLSGKDVRRCGR 1144
V + A++ L+ K R GR
Sbjct: 750 VFTVGMNHAVQLLAEKVASRGGR 772
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 14/130 (10%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ IG HP V G YG Y++ + A+++ I++V ++ + A++LL
Sbjct: 704 PRQIGPHPEDGIMVWSNIGRYGPYLKHSASTSDRGGTNANLADIEEVFTVGMNHAVQLLA 763
Query: 1082 YPV--------------NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTL 1127
V LG HP PI + + G V+ + A++P +++P D+++
Sbjct: 764 EKVASRGGRGVAAKPLKELGEHPDLEGPINIMKGKYGPYVKWEKINATIPSDIEPEDLSI 823
Query: 1128 EKALEFLSGK 1137
+ AL ++ K
Sbjct: 824 DHALILINEK 833
>gi|88608699|ref|YP_506474.1| DNA topoisomerase I [Neorickettsia sennetsu str. Miyayama]
gi|88600868|gb|ABD46336.1| DNA topoisomerase I [Neorickettsia sennetsu str. Miyayama]
Length = 827
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 314/834 (37%), Positives = 458/834 (54%), Gaps = 77/834 (9%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+V++VES TK K I YLG + VL S+GHVR L + GSV + F M++++ T
Sbjct: 2 NVLIVESPTKGKAIAQYLGKDFRVLSSFGHVRALPNKKGSVDVTESFEMLYKLTDTGETV 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ + + A L LA+DPDREGEAI+WH+VE+ ++ D L ++ V RVVFHEIT+ ++
Sbjct: 62 VPQLIKDVKKATALYLATDPDREGEAISWHLVEVFKENDVLPKD--VHRVVFHEITKTAV 119
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A+ + R+ID NLV+A R+ALDYL+GF+ISP+LW+KLPG +SAGRVQS AL ++CDR
Sbjct: 120 QNAIASPRKIDENLVRAQRLRQALDYLVGFSISPVLWKKLPGSKSAGRVQSVALRILCDR 179
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F P+EYWTV + E+ L P L+H ++L ++SI EA+ I +
Sbjct: 180 ENEIGLFTPEEYWTVTVNMTDGEALVL-----PTQLSHMNGEKLERMSIRRAEEAEKIVE 234
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+I+ F V + K+ + +K P+ITST+QQ A+ L FS TM LAQKLYEG+++
Sbjct: 235 EISGLPFLVEEIKKKELKQKPSPPFITSTMQQTASTILGFSVKKTMSLAQKLYEGIEI-G 293
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTD H+S E+ IR I E++G + P P + KKVKNAQEAHEAI
Sbjct: 294 GVIEGLITYMRTDATHLSVESVDAIREFIQEKFGQEYLPA-SPVLFKKKVKNAQEAHEAI 352
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT I R P + L D KLY LIW R +ACQM A + + D+ +S
Sbjct: 353 RPTSIFRTPEEIESYLTPDQYKLYRLIWERALACQMSDAITSSQNIVFVSQDKKFKTSAS 412
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF AA+ +N + + K G + +G+V L Q+ T+
Sbjct: 413 ASLLIFDGFNAAFS---------HGKNKNKNQDVIDFIKKHKEGAQVKVGDVLLTQNFTE 463
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE LVK LEELGIGRPSTYA+ + VLQ+R Y ++ ++ PE RGR+VS FL H
Sbjct: 464 PPHRYSEAGLVKHLEELGIGRPSTYATVVSVLQERGYASIVNKSFIPESRGRLVSEFLVH 523
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+FS+ +Y FTA++E LD V+ G W ++ D+W F S + + I +V +
Sbjct: 524 FFSKYVEYHFTAELEDRLDKVADGTIFWLDVIQDFWDSFHSNVEEVEKVPITEVLAFVNG 583
Query: 951 TFGDSLFASLPNK-DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDE 1009
S K CP C +G + VSR+G F+GC +P C +I + D+D
Sbjct: 584 ALARQKLVSAEVKVGDKCPKCEKGYMHLNVSRYGV--FLGCTDYPVCRFIVNSYSTDNDT 641
Query: 1010 EDTLQ--------------------RNT---------NVDE---------PKLIGHHPAS 1031
E Q +N+ ++DE PK++G HP
Sbjct: 642 EYPKQIAQDISLHKGPYGIYLKCKGKNSSIPKDVDPVSIDEEFAHKIASLPKILGKHPID 701
Query: 1032 KEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVN------ 1085
+++ + GPYG Y+ + + +D +TL+ A++ + V+
Sbjct: 702 GKEIKMGLGPYGLYL--------FWNAKYYNLQFSQMDEMTLDQAVQFMEDYVSHDKSLL 753
Query: 1086 --LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGK 1137
LG+H +G+ I +R R G +++ + +PK P ++LE A+ + K
Sbjct: 754 RVLGSH--EGEEIQIRDGRYGPYIKYSKMNVPIPKGESPESLSLETAILLIEKK 805
>gi|406706320|ref|YP_006756673.1| DNA topoisomerase I [alpha proteobacterium HIMB5]
gi|406652096|gb|AFS47496.1| DNA topoisomerase I, bacterial [alpha proteobacterium HIMB5]
Length = 858
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 304/776 (39%), Positives = 449/776 (57%), Gaps = 53/776 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLGD Y VL SYGH+RDL +++GSV P+ +F M WEV S + +
Sbjct: 2 NLVIVESPAKAKTINKYLGDNYTVLASYGHIRDLPSKNGSVDPEQNFRMEWEVDSFSKKY 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK I + +ILA+DPDREGEAIAWH+ E L + L + + RVVF+EIT+ ++
Sbjct: 62 LKEITDVAKESSKIILATDPDREGEAIAWHVKEYLNDKKLLKDK-EIERVVFNEITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
++ R+I+ LV AY+ARRALDYL+GFNISP+LW KLPG +SAGRVQS AL LI +R
Sbjct: 121 IHGIENPRQIEPLLVDAYMARRALDYLVGFNISPILWTKLPGSKSAGRVQSVALKLITER 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F P+E+WT+ + ++S+ + ++ +++ + S + E +
Sbjct: 181 EHEIESFNPEEFWTLSIKFNDNNNNSI-----TSSISQLDGEKIEKFSFRNKDEINKAIE 235
Query: 591 KINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I + F + S + +V +NP+ P+ TSTLQQ A+++L F A+ TM++AQKLY+G+++
Sbjct: 236 NIKNKKFSITDISSK-VVSRNPSGPFTTSTLQQTASSRLGFGASRTMQIAQKLYQGIEI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
+G GLITYMRTDG ++S +A K R I G + PE KK KNAQEAHEA
Sbjct: 294 EGETVGLITYMRTDGTNLSVDAVKSFRDYIESDLGKEYLPENPLNYSGKKAKNAQEAHEA 353
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT+I R P+ + L D +KLY LIWSR ++ QM+ A + + I + D + +S
Sbjct: 354 IRPTEINRTPSSIKKYLSTDQIKLYDLIWSRALSSQMESAKFDRNTITINSDDSKTICKS 413
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S S ++F GF Y + + K+++E+ IL + G P+ + + +QH+T
Sbjct: 414 SGSVLKFDGFLKIY------SSQSKDDDED-------ILPQMSKG-PINIEALIDEQHYT 459
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RYSE SLVKKLEELGIGRPSTYAS + + +R Y + ++ +P RG+++SAFL
Sbjct: 460 QPPPRYSEASLVKKLEELGIGRPSTYASIISTIANRGYAEITNKRFFPTDRGKLISAFLE 519
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
FS+ DY+FTA +E +LD +++G W +L +W F++ + + +V +L
Sbjct: 520 KLFSKYVDYNFTAGLEDQLDEITSGKESWIKVLEMFWKDFNNNVSEVKEKRTREVLDLLN 579
Query: 950 KTFGDSLFASLPNK--DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
+ G+ +F + DR+C +C EGTL K S F G FIGC+ +P C Y
Sbjct: 580 DSLGELIFEKNNDGKIDRNCKLCNEGTLSLKNS-FRGGAFIGCSNYPDCKYTRPL----- 633
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQL------------------- 1048
+ + EPK IG H + + LK+G +G Y+Q
Sbjct: 634 -SKAKAAAQAQLAEPKFIGKHDNGND-IYLKNGRFGPYLQYEINPEDIEEKTSKKRKTKK 691
Query: 1049 GEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAG 1104
+D L K S+ D+ + L+ A L P NLG +P + + I+L R G
Sbjct: 692 KKDENENL-KNVSIPKGIDLKDVDLDKAKFLCSLPKNLGVNPDNQKDILLNTGRYG 746
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 17/120 (14%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
PK +G +P +++ +LL +G YG Y++ K A + +I ++ SI L A+ L+
Sbjct: 725 PKNLGVNPDNQKDILLNTGRYGPYLKCDN-------KSARIENIDEIFSIGLNRAITLIA 777
Query: 1081 ---------RYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKAL 1131
+LG HP+D +P+ + + G ++++ A++P+ P ++T+E+AL
Sbjct: 778 EAKPGRMSSSIIKDLGEHPEDKKPVRIMKGQYGPYIKYKSLNATIPEEKDPAELTMEEAL 837
>gi|283856420|ref|YP_162928.2| DNA topoisomerase I [Zymomonas mobilis subsp. mobilis ZM4]
gi|292495058|sp|Q9X3X7.3|TOP1_ZYMMO RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase I;
AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName: Full=Untwisting
enzyme
gi|283775420|gb|AAV89817.2| DNA topoisomerase I [Zymomonas mobilis subsp. mobilis ZM4]
Length = 1212
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 304/686 (44%), Positives = 411/686 (59%), Gaps = 52/686 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+VVVES KAK I+ YLG Y+VL SYGH+RDL ++ GSV PD+ FSMVW+ L
Sbjct: 3 LVVVESPAKAKTIEKYLGSGYQVLASYGHIRDLPSKDGSVNPDNGFSMVWQNYPDKAHRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I+ A+ +++LILA+DPDREGEAI+WHI+E+L+ + L ++ V RV F+ IT+A++
Sbjct: 63 KAIEDAVKESDSLILATDPDREGEAISWHILELLKTKKLLPDD--VERVTFNAITKAAVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D +L+ AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ DRE
Sbjct: 121 DAMAHPRQLDNDLINAYLARRALDYLVGFTLSPILWRKLPGAKSAGRVQSVALRLVVDRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKPQEYW+VEA ++ D+ F + L ++ ++L +LSI T+A+ +
Sbjct: 181 QEIEGFKPQEYWSVEADME------ADSIGFTSRLIQWRGQKLEKLSIADKTQAEAAQSD 234
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F + N + V +NP P + TSTLQQ+AA KL F+A++TM+LAQ LYE
Sbjct: 235 VESGHF-TVSNVETKPVSRNPQPPFTTSTLQQEAARKLGFAASHTMRLAQSLYE------ 287
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTDG+ + + A R I +RY + P++ PR+Y K KNAQEAHEAI
Sbjct: 288 ---EGLITYMRTDGVQMDESAIAAARKTITQRYDGGYVPDK-PRQYQVKAKNAQEAHEAI 343
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD R A SG D +LY LIW R +A QM A + + VD+ + V R +
Sbjct: 344 RPTDFSRDKAA-SG----DHARLYELIWKRALASQMASAKLERTTVDLTDGTGQNVLRVT 398
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRH--EAFAILNSLKTGDPLYLGEVELKQHH 828
V F GF YE+ ++ NDR E A L L+ GD EV QH
Sbjct: 399 GQVVLFSGFLTLYEE-------SADDNANDRDGKEGRARLPLLRAGDAPLKKEVRADQHF 451
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RYSE SLVKK+E+LGIGRPSTYAS ++VL+DR YVT++ P GR+++AFL
Sbjct: 452 TQPPPRYSEASLVKKMEDLGIGRPSTYASVIQVLKDRAYVTLERNRFIPSEAGRLLTAFL 511
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F Y FTA +E LD +S G +W+ +L +W F + L
Sbjct: 512 ERFFERYVSYDFTAGLEDSLDEISGGRADWQKVLDAFWHDFKPKTAEVMEQQPSAITAEL 571
Query: 949 EKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
+K LF P+K R CP C G L K RFGA FI C+ +P C Y
Sbjct: 572 DKFLEPWLF---PDKGDGHDPRECPSCHTGRLALKGGRFGA--FIACSNYPECKYTRGFG 626
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHP 1029
G+D +D +EP L+G+ P
Sbjct: 627 QGEDGVDD--------NEPVLLGYMP 644
Score = 49.7 bits (117), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVD----SITLEDAL 1077
P+ IG HP S + ++ +G YG Y+ G + +S + D+D + L +A
Sbjct: 983 PREIGLHPESGKMIIAGTGRYGPYLNC----DGKYARLSSTEELLDIDIDRAVVKLAEAA 1038
Query: 1078 E--------LLRYPVNL-GNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
+ L R P+ + G+ P +P+ L R G V T AS+PK+ P +T E
Sbjct: 1039 QNKGRTGATLSREPLKVFGDSPVTEKPVQLMNGRYGPYVTDGETNASLPKDTTPESLTFE 1098
Query: 1129 KALEFLSGK 1137
+AL L +
Sbjct: 1099 EALALLEAR 1107
>gi|260752381|ref|YP_003225274.1| DNA topoisomerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
gi|258551744|gb|ACV74690.1| DNA topoisomerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
Length = 1221
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 304/686 (44%), Positives = 411/686 (59%), Gaps = 52/686 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+VVVES KAK I+ YLG Y+VL SYGH+RDL ++ GSV PD+ FSMVW+ L
Sbjct: 3 LVVVESPAKAKTIEKYLGSGYQVLASYGHIRDLPSKDGSVNPDNGFSMVWQNYPDKAHRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I+ A+ +++LILA+DPDREGEAI+WHI+E+L+ + L ++ V RV F+ IT+A++
Sbjct: 63 KAIEDAVKESDSLILATDPDREGEAISWHILELLKTKKLLPDD--VERVTFNAITKAAVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D +L+ AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ DRE
Sbjct: 121 DAMAHPRQLDNDLINAYLARRALDYLVGFTLSPILWRKLPGAKSAGRVQSVALRLVVDRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKPQEYW+VEA ++ D+ F + L ++ ++L +LSI T+A+ +
Sbjct: 181 QEIEGFKPQEYWSVEADME------ADSIGFTSRLIQWRGQKLEKLSIADKTQAEAAQSD 234
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F + N + V +NP P + TSTLQQ+AA KL F+A++TM+LAQ LYE
Sbjct: 235 VESGHF-TVSNVETKPVSRNPQPPFTTSTLQQEAARKLGFAASHTMRLAQSLYE------ 287
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTDG+ + + A R I +RY + P++ PR+Y K KNAQEAHEAI
Sbjct: 288 ---EGLITYMRTDGVQMDESAIAAARKTITQRYDGGYVPDK-PRQYQVKAKNAQEAHEAI 343
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD R A SG D +LY LIW R +A QM A + + VD+ + V R +
Sbjct: 344 RPTDFSRDKAA-SG----DHARLYELIWKRALASQMASAKLERTTVDLTDGTGQNVLRVT 398
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRH--EAFAILNSLKTGDPLYLGEVELKQHH 828
V F GF YE+ ++ NDR E A L L+ GD EV QH
Sbjct: 399 GQVVLFSGFLTLYEE-------SADDNANDRDGKEGRARLPLLRAGDAPLKKEVRADQHF 451
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RYSE SLVKK+E+LGIGRPSTYAS ++VL+DR YVT++ P GR+++AFL
Sbjct: 452 TQPPPRYSEASLVKKMEDLGIGRPSTYASVIQVLKDRAYVTLERNRFIPSEAGRLLTAFL 511
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F Y FTA +E LD +S G +W+ +L +W F + L
Sbjct: 512 ERFFERYVSYDFTAGLEDSLDEISGGRADWQKVLDAFWHDFKPKTAEVMEQQPSAITAEL 571
Query: 949 EKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
+K LF P+K R CP C G L K RFGA FI C+ +P C Y
Sbjct: 572 DKFLEPWLF---PDKGDGHDPRECPSCHTGRLALKGGRFGA--FIACSNYPECKYTRGFG 626
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHP 1029
G+D +D +EP L+G+ P
Sbjct: 627 QGEDGVDD--------NEPVLLGYMP 644
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVD----SITLEDAL 1077
P+ IG HP S + ++ +G YG Y+ G + +S + D+D + L +A
Sbjct: 992 PREIGLHPESGKMIIAGTGRYGPYLNC----DGKYARLSSTEELLDIDIDRAVVKLAEAA 1047
Query: 1078 E--------LLRYPVNL-GNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
+ L R P+ + G+ P +P+ L R G V T AS+PK+ P +T E
Sbjct: 1048 QNKGRTGATLSREPLKVFGDSPVTEKPVQLMNGRYGPYVTDGETNASLPKDTTPESLTFE 1107
Query: 1129 KALEFLSGK 1137
+AL L +
Sbjct: 1108 EALALLEAR 1116
>gi|254467793|ref|ZP_05081199.1| DNA topoisomerase I [beta proteobacterium KB13]
gi|207086603|gb|EDZ63886.1| DNA topoisomerase I [beta proteobacterium KB13]
Length = 823
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 306/793 (38%), Positives = 456/793 (57%), Gaps = 58/793 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+++VES +KAK I YLG + VL SYGHVRDL +SG++ D F M + + +L
Sbjct: 4 LLIVESPSKAKTINKYLGGDFNVLASYGHVRDLLPKSGAIN-TDSFEMEYALIDRNKKYL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A ++ + LA+DPDREGEAI+WHIVE+L+ + E + RV+F EIT+ +I+
Sbjct: 63 DAIITAAKKSDEIYLATDPDREGEAISWHIVEILKSKKISAEQKIIKRVIFEEITKDAIQ 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC+RE
Sbjct: 123 QAITKPRDVSMSLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI +F+ +EYW++ KK S F + L ++++ Q +I T KD EQ
Sbjct: 183 AEIQKFESKEYWSIHLEATKKSSQ------FSSKLIQLNNEKVEQFTI---TSEKDQEQI 233
Query: 592 I------NSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
+ +S +V + K+ R P+ TSTLQQ+A KL F+ + TM++AQ+LYEG
Sbjct: 234 VGDLLLKSSGKCRVGRVDKKKRTRNPAPPFTTSTLQQEAVRKLGFTTSRTMRIAQQLYEG 293
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
+ L +GT GLITYMRTD +S+EA +IR+ I Y ++ P Y K KNAQE
Sbjct: 294 ISLAEGT-VGLITYMRTDSFSLSNEALGQIRNYIKTTYDENYLPSNS-IGYKTKSKNAQE 351
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEAIRPTDI+R+PA + L + KLY +IW R +ACQM PA + +D+
Sbjct: 352 AHEAIRPTDIQRVPAKIKQFLTPEQFKLYEIIWKRAIACQMTPAQFDAVSIDLEVGKGES 411
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
+FR++ + F GF A Y + ++++ + + L+ G+ L + ++
Sbjct: 412 IFRANGQTLRFPGFMALYIE--------GDDDKENDDADDKKIPDLEIGEELSVKKIYGS 463
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PP RYSE SLVK LEE GIGRPSTYAS + LQDR YV + + P G +V+
Sbjct: 464 QHFTEPPPRYSEASLVKTLEEYGIGRPSTYASIISTLQDREYVLLDKKRFTPTDVGIVVN 523
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
FL+ +F + DY FTA++E++LD ++A EW +L ++W F+ + +++
Sbjct: 524 KFLTEHFDKYVDYEFTANLESDLDEIAADTKEWVPILKNFWQDFNQQISDKENI------ 577
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFG-AGYFIGCNQHPRCNYIAKTLY 1004
D + + + SCP CG+ SR G G FIGC+ +P C+Y
Sbjct: 578 --------DRAAITQEDINESCPKCGQALF----SRLGRRGKFIGCSGYPDCDYTRNV-- 623
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG--EDRTGYLPKRASV 1062
+EED +EP++I H + + VLL GPYG Y+Q+G E+ + PKR S+
Sbjct: 624 ---NEED------GANEPQVIFHDQETDKDVLLLRGPYGPYLQIGVPEEDSKTKPKRVSI 674
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+ S+ + A +L+ P+ LG++P+ G+PI+ + R G V H S+PK
Sbjct: 675 PPNIPISSVNEQVAKQLMSLPLALGDYPETGKPIVANIGRFGPYVSHDGKFKSIPKADNI 734
Query: 1123 NDVTLEKALEFLS 1135
D+T ++A+E ++
Sbjct: 735 FDITFDRAVELVA 747
>gi|406708427|ref|YP_006758779.1| DNA topoisomerase I [alpha proteobacterium HIMB59]
gi|406654203|gb|AFS49602.1| DNA topoisomerase I [alpha proteobacterium HIMB59]
Length = 837
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 306/826 (37%), Positives = 482/826 (58%), Gaps = 59/826 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDD--DFSMVWEVPSAAW 408
+++VVES KAK I YLG +EV+ + GH RDLA + G +D D ++ WE SA
Sbjct: 2 NLLVVESPAKAKTINKYLGSDFEVIATVGHFRDLAKKDGVQVSEDQNDITLNWETTSAGL 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+ +I+ SG E + LA+DPDREGEAI WH+++ L+++ +N R+ F+EIT+
Sbjct: 62 KMIDTIEKKASGYEQIYLATDPDREGEAITWHLIKSLEKK---VDNNKFKRITFNEITKN 118
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ + + AR +D +LV AYLARR+LDYL G+N+SP+LWRK+PG +SAGRVQS A+ LI
Sbjct: 119 AVINSFEKARNVDEHLVSAYLARRSLDYLAGYNLSPVLWRKMPGSRSAGRVQSVAVRLIY 178
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE+EI++F+P++++ + + K +S L+T + F+ +++++L AK
Sbjct: 179 EREIEIEQFEPEKFYKI-GIQGKIKSADLET-----AIASFEGEKVDKLFFRDENLAKKA 232
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
EQ I S+ F + K +R++ RK P+ TSTLQQ A ++LNFSA+ TM +AQ LY GV +
Sbjct: 233 EQIILSSKFNISKIDERNVSRKPKAPFNTSTLQQTANSQLNFSASQTMTVAQGLYMGVDI 292
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
T A LITYMRTD + +S E+ + IR+ I +G + P++ P +Y K KNAQEAHE
Sbjct: 293 QKETVA-LITYMRTDSISLSKESIEIIRAKIENDFGPKYLPKD-PIEYKTKKKNAQEAHE 350
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPTD+ P + + ED KLY LIW RT++ QM A + I N +ESI +
Sbjct: 351 AIRPTDVNIHPDSIKDHVTEDQFKLYDLIWRRTISSQMSNAETNLNALTITNPEESIQLK 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ ++ F GF+ Y + G ++F++L++L GD VE+ +
Sbjct: 411 ATLGKLVFDGFKKLYNLQEEG-----------EEQSFSVLDNLNVGDEYLPNTVEIDESF 459
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP+RY++ SLVKKLEEL IGRPSTYAS ++V+Q R YV + Y RGR+V+ FL
Sbjct: 460 TSPPSRYTDASLVKKLEELDIGRPSTYASIIQVIQSRGYVIKNGKSFYLNDRGRVVNVFL 519
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+YF + +Y FTADME +LD+V+A EWK L++++W F + S +V ++
Sbjct: 520 VNYFKKFLEYKFTADMEQQLDDVAANKAEWKELVLNFWKDFQKFIDEVMSKPNREVIDVI 579
Query: 949 EKTFGDSLFASLPNKDR-----------SCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
D L + NK +C G G L KV + G FIGC+++P C
Sbjct: 580 ----NDELSPVIFNKKEDGMITKCTSWTNCTHDGSGDLGIKVGKIGG--FIGCSKYPDCK 633
Query: 998 Y------IAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGED 1051
Y K + ++ ++D V P+++G + +++ ++ GPYG+Y+QLG +
Sbjct: 634 YTISIGNFIKEVNPNNSDDDI------VTFPRILGIDADTNKEISIQLGPYGYYLQLGRE 687
Query: 1052 RTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRR 1111
PKR ++ D ++ + A +L++ P+ LG++P+ +P++ + G V+++
Sbjct: 688 TDDEKPKRVTLPKNYDPMNLGMNIASQLIKLPITLGHYPETEEPVIANIGAYGPYVKYQD 747
Query: 1112 TIASVPKNMKPNDVTLEKALEFLSGK------DVRRCGRPKGKPKR 1151
AS+ + ++ LE+A+E ++ K VR G K K ++
Sbjct: 748 IFASLGRKFDILEIGLEQAVELINIKKNKPTNKVREIGVLKRKRQK 793
>gi|384085897|ref|ZP_09997072.1| DNA topoisomerase I [Acidithiobacillus thiooxidans ATCC 19377]
Length = 835
Score = 541 bits (1393), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/699 (43%), Positives = 424/699 (60%), Gaps = 52/699 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK IQ YLGD +EVL SYGHVRDL + G+V P+ DF+M +E H+
Sbjct: 5 LVIVESPAKAKTIQKYLGDDFEVLASYGHVRDLRPKEGAVDPEQDFAMRYEAIERNERHV 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
++I AL A+ L LA+DPDREGEAI+WH+VE+L+++ L N RVVFHEIT+ +++
Sbjct: 65 EAIIKALRKADKLWLATDPDREGEAISWHLVELLRERKQLG-NKPAQRVVFHEITKKAVQ 123
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ REI +LV A ARRALDYL+GFN+SPLLWRK+ SAGRVQSAAL LIC+RE
Sbjct: 124 EAIANPREIAMDLVNAQQARRALDYLVGFNLSPLLWRKVRPGLSAGRVQSAALRLICERE 183
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI--- 588
EI+ F QEYWT+ A L +S F LTH+Q+K+L Q I + T+A+ I
Sbjct: 184 DEIEAFVSQEYWTIAARLLHADSE------FSGRLTHWQNKKLEQFDINNETQAESIRSS 237
Query: 589 -EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
E + +V + ++S R+ P+ TSTLQQ+A+ KL F+A+ TM++AQ+LYEG+
Sbjct: 238 MEADMQQQALRVREVERKSRQRQPAAPFTTSTLQQEASRKLGFNASRTMRVAQQLYEGIN 297
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ T GLI+YMRTD +++S+EA +IR I YG PE PR+Y K KNAQEAH
Sbjct: 298 IGSETV-GLISYMRTDAVNLSEEAIADIRGFIDGHYGHEFVPE-SPRRYKTKTKNAQEAH 355
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EA+RPTDI R P ML G+L++D +LY LIW R++ACQM PA + + VD+ +A
Sbjct: 356 EAVRPTDISRTPEMLQGILEKDLWRLYDLIWKRSVACQMAPARLDMVAVDM-DAGTHWTL 414
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S V F GF A Y + A + +EN+R IL L+ GD + V+ +QH
Sbjct: 415 RANGSTVTFPGFMAVYLEGKDDA----DEDENNR-----ILPPLEQGDQPQVQGVDPEQH 465
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYS+ +LVK LE GIGRPSTYAS ++ LQ+R YV + R P GR+V F
Sbjct: 466 FTEPPPRYSDATLVKTLEAHGIGRPSTYASIIQTLQNREYVETEQRRFRPTDLGRVVGRF 525
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
LS++F DY+FTA ME ELD +S G +W+ +L ++W F S +
Sbjct: 526 LSNHFERYVDYNFTAGMEDELDAISRGEKQWRPVLNEFWGPFRSL--------------L 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
EK A+ D +CP CG+ L ++ R G F+ C+ +P C Y + + G
Sbjct: 572 DEKANVSRAEATSEAMDENCPECGK-PLFLRLGRHGR--FVACSGYPECKY-TRPVDGPR 627
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYV 1046
+ + + R+ P + ++ K+G YG ++
Sbjct: 628 EAPEPVGRDC-----------PDCGKPLVYKTGRYGRFI 655
Score = 43.9 bits (102), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 966 SCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+CP CGEG L+ K SR+G F CN +P+C Y
Sbjct: 678 TCPQCGEGELVEKRSRYGK-VFYSCNTYPKCTY 709
>gi|397676027|ref|YP_006517565.1| DNA topoisomerase I [Zymomonas mobilis subsp. mobilis ATCC 29191]
gi|395396716|gb|AFN56043.1| DNA topoisomerase I [Zymomonas mobilis subsp. mobilis ATCC 29191]
Length = 1223
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/686 (44%), Positives = 409/686 (59%), Gaps = 52/686 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+VVVES KAK I+ YLG Y+VL SYGH+RDL ++ GSV PD+ FSMVW+ L
Sbjct: 3 LVVVESPAKAKTIEKYLGSGYQVLASYGHIRDLPSKDGSVNPDNGFSMVWQNYPDKAHRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I+ A+ +++LILA+DPDREGEAI+WHI+E+L+ + L ++ V RV F+ IT+A++
Sbjct: 63 KAIEDAVKESDSLILATDPDREGEAISWHILELLKTKKLLPDD--VERVTFNAITKAAVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D +L+ AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ DRE
Sbjct: 121 DAMAHPRQLDNDLINAYLARRALDYLVGFTLSPILWRKLPGAKSAGRVQSVALRLVVDRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKPQEYW+VEA ++ D+ F + L + ++L +LSI T+A+ +
Sbjct: 181 QEIEGFKPQEYWSVEADMEA------DSIGFTSRLIQWHGQKLEKLSIADKTQAEAAKSD 234
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F + N + V +NP P + TSTLQQ+AA KL F+A++TM+LAQ LYE
Sbjct: 235 VESGHF-TVSNVETKPVSRNPQPPFTTSTLQQEAARKLGFAASHTMRLAQSLYE------ 287
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTDG+ + + A R I +RY P++ PR+Y K KNAQEAHEAI
Sbjct: 288 ---EGLITYMRTDGVQMDESAIVAARKTITQRYDGGFVPDK-PRQYQVKAKNAQEAHEAI 343
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD R A SG D +LY LIW R +A QM A + + VD+ + V R +
Sbjct: 344 RPTDFSRDKAA-SG----DHARLYELIWKRALASQMASAKLERTTVDLTDGTGQNVLRVT 398
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRH--EAFAILNSLKTGDPLYLGEVELKQHH 828
V F GF YE+ ++ NDR E A L L+ GD EV QH
Sbjct: 399 GQVVLFSGFLTLYEES-------ADDNANDRDGKEGRARLPLLRAGDAPLKKEVRADQHF 451
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RYSE SLVKK+E+LGIGRPSTYAS ++VL+DR YVT++ P GR+++AFL
Sbjct: 452 TQPPPRYSEASLVKKMEDLGIGRPSTYASVIQVLKDRAYVTLERNRFIPSEAGRLLTAFL 511
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F Y FTA +E LD +S G +W+ +L +W F + L
Sbjct: 512 ERFFERYVSYDFTAGLEDSLDEISGGRADWQKVLDAFWHDFKPKTAEVMEQQPSAITAEL 571
Query: 949 EKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
+K LF P+K R CP C G L K RFGA FI C+ +P C Y
Sbjct: 572 DKFLEPWLF---PDKGDGHDPRECPSCHTGRLALKGGRFGA--FIACSNYPECKYTRGFG 626
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHP 1029
G+D +D +EP L+G+ P
Sbjct: 627 QGEDGVDD--------NEPVLLGYMP 644
Score = 49.7 bits (117), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVD----SITLEDAL 1077
P+ IG HP S + ++ +G YG Y+ G + +S + D+D + L +A
Sbjct: 994 PREIGLHPESGKMIIAGTGRYGPYLNC----DGKYARLSSTEELLDIDIDRAVVKLAEAA 1049
Query: 1078 E--------LLRYPVNL-GNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
+ L R P+ + G+ P +P+ L R G V T AS+PK+ P +T E
Sbjct: 1050 QNKGRTGTTLSREPLKVFGDSPVTEKPVQLMNGRYGPYVTDGETNASLPKDTTPESLTFE 1109
Query: 1129 KALEFLSGK 1137
+AL L +
Sbjct: 1110 EALALLEAR 1118
>gi|384411076|ref|YP_005620441.1| DNA topoisomerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|335931450|gb|AEH61990.1| DNA topoisomerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
Length = 1217
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/686 (44%), Positives = 410/686 (59%), Gaps = 52/686 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+VVVES KAK I+ YLG Y+VL SYGH+RDL ++ GSV PD+ FSMVW+ L
Sbjct: 3 LVVVESPAKAKTIEKYLGSGYQVLASYGHIRDLPSKDGSVNPDNGFSMVWQNYPDKAHRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I+ A+ +++LILA+DPDREGEAI+WHI+E+L+ + L ++ V RV F+ IT+A++
Sbjct: 63 KAIEDAVKESDSLILATDPDREGEAISWHILELLKTKKLLPDD--VERVTFNAITKAAVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D +L+ AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ DRE
Sbjct: 121 DAMAHPRQLDNDLINAYLARRALDYLVGFTLSPILWRKLPGAKSAGRVQSVALRLVVDRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKPQEYW+VEA ++ D+ F + L ++ ++L +LSI T+A+ +
Sbjct: 181 QEIEGFKPQEYWSVEADME------ADSIGFTSRLIQWRGQKLEKLSIADKTQAEAAQSD 234
Query: 592 INSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F + N + V +NP P+ TSTLQQ+AA KL F+A++TM+LAQ LYE
Sbjct: 235 VESGHF-TVSNVETKPVSRNPQPPFTTSTLQQEAARKLGFAASHTMRLAQSLYE------ 287
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTDG+ + + A R I +RY P++ PR+Y K KNAQEAHEAI
Sbjct: 288 ---EGLITYMRTDGVQMDESAIAAARKTITQRYDGGFVPDK-PRQYQVKAKNAQEAHEAI 343
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD R A SG D +LY LIW R +A QM A + + VD+ + V R +
Sbjct: 344 RPTDFSRDKAA-SG----DHARLYELIWKRALASQMASAKLERTTVDLTDGTGQNVLRVT 398
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRH--EAFAILNSLKTGDPLYLGEVELKQHH 828
V F GF YE+ ++ NDR E A L L+ G+ EV QH
Sbjct: 399 GQVVLFSGFLTLYEE-------SADDNANDRDGKEGRARLPLLRAGNAPLKKEVRADQHF 451
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RYSE SLVKK+E+LGIGRPSTYAS ++VL+DR YVT++ P GR+++AFL
Sbjct: 452 TQPPPRYSEASLVKKMEDLGIGRPSTYASVIQVLKDRAYVTLERNRFIPSEAGRLLTAFL 511
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F Y FTA +E LD +S G +W+ +L +W F + L
Sbjct: 512 ERFFERYVSYDFTAGLEDSLDEISGGRADWQKVLDAFWHDFKPKTAEVMEQQPSAITAEL 571
Query: 949 EKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
+K LF P+K R CP C G L K RFGA FI C+ +P C Y
Sbjct: 572 DKFLEPWLF---PDKGDGHDPRECPSCHTGRLALKGGRFGA--FIACSNYPECKYTRGFG 626
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHP 1029
G+D +D +EP L+G+ P
Sbjct: 627 QGEDGVDD--------NEPVLLGYMP 644
Score = 49.3 bits (116), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS----ITLEDAL 1077
P+ IG HP S + ++ +G YG Y+ G + +S + D+D + L +A
Sbjct: 988 PREIGLHPESGKMIIAGTGRYGPYLNC----DGKYARLSSTEELLDIDIDRAIVKLAEAA 1043
Query: 1078 E--------LLRYPVNL-GNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
+ L R P+ + G+ P +P+ L R G V T AS+PK+ P +T E
Sbjct: 1044 QNKGRTGATLSREPLKVFGDSPVTEKPVQLMNGRYGPYVTDGETNASLPKDTTPESLTFE 1103
Query: 1129 KALEFLSGK 1137
+AL L +
Sbjct: 1104 EALALLEAR 1112
>gi|4511993|gb|AAD21553.1| topoisomerase I [Zymomonas mobilis subsp. mobilis ZM4]
Length = 1217
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/686 (44%), Positives = 410/686 (59%), Gaps = 52/686 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+VVVES KAK I+ YLG Y+VL SYGH+RDL ++ GSV PD+ FSMVW+ L
Sbjct: 8 LVVVESPAKAKTIEKYLGSGYQVLASYGHIRDLPSKDGSVNPDNGFSMVWQNYPDKAHRL 67
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I+ A+ +++LILA+DPDREGEAI+WHI+E+L+ + L ++ V RV F+ IT+A++
Sbjct: 68 KAIEDAVKESDSLILATDPDREGEAISWHILELLKTKKLLPDD--VERVTFNAITKAAVT 125
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D +L+ AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQSA L L+ DRE
Sbjct: 126 DAMAHPRQLDNDLINAYLARRALDYLVGFTLSPILWRKLPGAKSAGRVQSARLRLVVDRE 185
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKPQEYW+VEA ++ D+ F + L ++ ++L +LSI T+A+ +
Sbjct: 186 QEIEGFKPQEYWSVEADME------ADSIGFTSRLIQWRGQKLEKLSIADKTQAEAAQSD 239
Query: 592 INSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F + N + V +NP P+ TSTLQQ+AA KL F+A++TM+LAQ LYE
Sbjct: 240 VESGHF-TVSNVETKPVSRNPQPPFTTSTLQQEAARKLGFAASHTMRLAQSLYE------ 292
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTDG+ + + A R I +RY + P++ PR+Y K KNAQEAHEAI
Sbjct: 293 ---EGLITYMRTDGVQMDESAIAAARKTITQRYDGGYVPDK-PRQYQVKAKNAQEAHEAI 348
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD R A SG D +LY LIW R +A QM A + + VD+ + V R +
Sbjct: 349 RPTDFSRDKAA-SG----DHARLYELIWKRALASQMASAKLERTTVDLTDGTGQNVLRVT 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRH--EAFAILNSLKTGDPLYLGEVELKQHH 828
V F GF YE+ ++ NDR E A L L+ GD E QH
Sbjct: 404 GQVVLFSGFLTLYEE-------SADDNANDRDGKEGRARLPLLRAGDAPLKKEFRADQHF 456
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RYSE SLVKK+E+LGIGRPSTYAS ++VL+DR YVT++ P GR+++AFL
Sbjct: 457 TQPPPRYSEASLVKKMEDLGIGRPSTYASFIQVLKDRAYVTLERNRFIPSEAGRLLTAFL 516
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F Y FTA +E LD +S G +W+ +L +W F + L
Sbjct: 517 ERFFERYVSYDFTAGLEDSLDEISGGRADWQKVLDAFWHDFKPKTAEVMEQQPSAITAEL 576
Query: 949 EKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
+K LF P+K R CP C G L K RFGA FI C+ +P C Y
Sbjct: 577 DKFLEPWLF---PDKGDGHDPRECPSCHTGRLALKGGRFGA--FIACSNYPECKYTRGFG 631
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHP 1029
G+D +D +EP L+G+ P
Sbjct: 632 QGEDGVDD--------NEPVLLGYMP 649
Score = 48.1 bits (113), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVD----SITLEDAL 1077
P+ IG HP S + ++ +G YG Y+ G + S + D+D + L +A
Sbjct: 988 PREIGLHPESGKMIIAGTGRYGPYLNC----DGKYARLFSTEELLDIDIDRAVVKLAEAA 1043
Query: 1078 E--------LLRYPVNL-GNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
+ L R P+ + G+ P +P+ L R G V T AS+PK+ P +T E
Sbjct: 1044 QNKGRTGATLSREPLKVFGDSPVTEKPVQLMNGRYGPYVTDGETNASLPKDTTPESLTFE 1103
Query: 1129 KALEFLSGK 1137
+AL L +
Sbjct: 1104 EALALLEAR 1112
>gi|254455999|ref|ZP_05069428.1| DNA topoisomerase I [Candidatus Pelagibacter sp. HTCC7211]
gi|207083001|gb|EDZ60427.1| DNA topoisomerase I [Candidatus Pelagibacter sp. HTCC7211]
Length = 860
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 305/780 (39%), Positives = 445/780 (57%), Gaps = 59/780 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLGD Y VL SYGH+RDL +++GSV PD +F M WEV S + +
Sbjct: 2 NLVIVESPAKAKTINKYLGDNYTVLASYGHIRDLPSKNGSVDPDQNFKMEWEVDSFSKKY 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK I A + +ILA+DPDREGEAIAWH+ E L ++ L + V RVVF+EIT+ ++
Sbjct: 62 LKEITDAAKDSSKIILATDPDREGEAIAWHVKEYLSEKKLLKDK-AVERVVFNEITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ R+I+ LV AY+ARRALDYL+GFNISP+LW KLPG +SAGRVQS AL LI +R
Sbjct: 121 THGIDNPRQIEPLLVDAYMARRALDYLVGFNISPILWTKLPGSKSAGRVQSVALKLITER 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F P+E+WT+ ++ + E ++L T A ++ ++ + S + E +
Sbjct: 181 EHEIESFDPEEFWTL-SINFQDEKNNLIT----ASISQLDGNKIEKFSFKNKIEINKAIE 235
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I F + S + + R P+ TSTLQQ A+++L F A+ TM++AQ+LY+G+++ D
Sbjct: 236 NIKDQKFNISDISSKIISRNPSGPFTTSTLQQVASSRLGFGASRTMQIAQRLYQGIEI-D 294
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTDG ++S +A + R I +YG + P+ KK KNAQEAHEAI
Sbjct: 295 GETIGLITYMRTDGTNLSKDAVSDFRGFIINQYGKEYLPDNPINYSGKKAKNAQEAHEAI 354
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTDI R P + L D KLY+LIW+R ++ QM+ A + + I + D + +SS
Sbjct: 355 RPTDINRSPDSVKKYLSTDQQKLYNLIWTRALSSQMETAKFDRNTITITSTDNKTICKSS 414
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F G+ + + K+++E IL +K G P+ + + +QH TQ
Sbjct: 415 GSVLRFDGYLKVFPSLS------KDDDE-------TILPEMKNG-PINIESLIDEQHFTQ 460
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE S+VKKLEELGIGRPSTYAS + + +R Y + ++ +P RG+++SAFL
Sbjct: 461 PPPRYSEASIVKKLEELGIGRPSTYASIISTIANRGYAEILNKRFFPTDRGKLISAFLEK 520
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
FS+ DY+FTA +E +LD ++ G W +L +W F++ + + +V +L +
Sbjct: 521 LFSKYVDYNFTAGLEDQLDEITTGKESWIKVLEMFWKDFNNNVSEVKEKRTREVLDLLNE 580
Query: 951 TFGDSLFASLPNKD------RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
+ G +F +KD R C +C G+L K S F G FIGC+ +P C +
Sbjct: 581 SLGTLIF----DKDADGKVVRKCQLCETGSLSLKNS-FRGGAFIGCSNYPECKFTRPL-- 633
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQ----LGE---------- 1050
+ + EPK IG H + + LK+G +G Y+Q L E
Sbjct: 634 ----SKAKAAAQAQLAEPKFIGKHENGND-IFLKNGRFGPYLQYEKILDELPQEKTTKKK 688
Query: 1051 ------DRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAG 1104
+ L K S+ +++SI LE A L P +LG +P + + I L R G
Sbjct: 689 KKVKKLNDVNELLKNVSIPKGLELESIDLEKAQFLCSLPKSLGINPDNQKEIFLNTGRFG 748
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 65/120 (54%), Gaps = 17/120 (14%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
PK +G +P +++++ L +G +G Y++ K A + +++++ SI L A+ L+
Sbjct: 727 PKSLGINPDNQKEIFLNTGRFGPYLKCEN-------KSARIENVEEIFSIGLNRAVTLIA 779
Query: 1081 ---------RYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKAL 1131
+LG HP+D +P+ + + G ++++ A++P+ P ++T+E+AL
Sbjct: 780 EAKTGRMSASIIKDLGEHPEDKKPVKVMKGQYGPYIKYKSLNATIPEEKDPTELTMEEAL 839
>gi|344943077|ref|ZP_08782364.1| DNA topoisomerase I [Methylobacter tundripaludum SV96]
gi|344260364|gb|EGW20636.1| DNA topoisomerase I [Methylobacter tundripaludum SV96]
Length = 772
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 308/703 (43%), Positives = 437/703 (62%), Gaps = 50/703 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I+ YLG ++VL SYGHVRDL + G+V P++DF+M +EV
Sbjct: 3 KNLVIVESPAKAKTIEKYLGKDFQVLASYGHVRDLIPKEGAVDPNNDFAMKYEVIDRNQK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I AL A+ L LA+DPDREGEAI+WH++E+L+++ L + V RVVFHEIT+ +
Sbjct: 63 HVQAISKALKTADTLYLATDPDREGEAISWHLLELLKEKKLLKDK-PVHRVVFHEITKKA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+ A+ +I NLV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL +I +
Sbjct: 122 VTEAIANPEQIAINLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE+EI+ FK +EYWT++A L + +F A LT F+ ++++Q SI A+ +
Sbjct: 182 RELEIEAFKTREYWTIDAALMAHDQ------AFKAKLTQFEGEKISQFSITDEELAEKTK 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
Q + A V K K+ R P+ITSTLQQ+A+ KL F+ TM +AQ+LYEG+
Sbjct: 236 QTLLDAADGQLMVAKLEKKQQKRNPAPPFITSTLQQEASRKLGFTTKRTMIVAQQLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ G AGLITYMRTD +++S +A +EIR+LI E YG+ + P+E PR + K KNAQEA
Sbjct: 296 DI-GGETAGLITYMRTDSVNLSVDAVEEIRALIAENYGAENVPKE-PRVFKTKSKNAQEA 353
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT R LP+ + L + KLY LIW RT+ACQM AT+ + VD+ AD V
Sbjct: 354 HEAIRPTSPRHLPSQIKSHLSIEQFKLYELIWKRTIACQMIHATLNVVGVDLTCADGKHV 413
Query: 767 FRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
FR++ S + GF AAY E D ++ E+D E+F L ++ G P+ LG++
Sbjct: 414 FRATGSTIASPGFMAAYLEGKD-------DSNESDDKESF--LPPMEEGRPVQLGDINAG 464
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PP RY E SLVK LEE GIGRPSTYAS + LQ+R YVT+ + YP GR+V+
Sbjct: 465 QHFTEPPPRYGEASLVKSLEEHGIGRPSTYASIISTLQNREYVTLDGKRFYPTDVGRIVN 524
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
FL+ +F++ DY FTA++E ELD VS G +W L+ D+W F++ IH+ E
Sbjct: 525 KFLTEHFTKYVDYDFTANLEDELDAVSRGEKDWVPLMHDFWKPFTTL--------IHEKE 576
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
+ +++ D ++ D CP CG L ++ R G FIGC +P C+Y T
Sbjct: 577 ESVQRK--DVTQEAI---DEKCPDCG-SPLSIRLGR--NGRFIGCTNYPECSY---TRNL 625
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
+DD DEP+++ P + +++K+G YG ++
Sbjct: 626 NDD-------GAASDEPEVVEGRVCPKCESPLVIKTGRYGKFI 661
>gi|297537476|ref|YP_003673245.1| DNA topoisomerase I [Methylotenera versatilis 301]
gi|297256823|gb|ADI28668.1| DNA topoisomerase I [Methylotenera versatilis 301]
Length = 863
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 316/794 (39%), Positives = 464/794 (58%), Gaps = 58/794 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+++VES +KAK ++ YLG +EVL SYGHVRDL ++G+V +DF+M +++ H+
Sbjct: 4 LLIVESPSKAKTLKKYLGSDFEVLASYGHVRDLIPKNGAVDTANDFAMKYDIIERNSKHV 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ A+++ LA+DPDREGEAI+WHI E+L+ ++ L +N + RVVFHEIT+++++
Sbjct: 64 DAIAKAVKSADSIYLATDPDREGEAISWHIAEILKSKNLL-KNKVMKRVVFHEITKSAVE 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+I +V A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +RE
Sbjct: 123 HAIAEPRDISMPMVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDK-KESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
+EI+ FK QEYW++ LD K SH F A L ++++ Q ++ +H + DI
Sbjct: 183 LEIEAFKSQEYWSIH--LDALKHSHG-----FTAKLIQLNNQKVEQFTVINHDQQSDIVG 235
Query: 591 KI---NSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
K+ ++ V + K+ R P+ TSTLQQ+A KL F+ + M++AQ+LYEG+
Sbjct: 236 KLLLASAGKTTVSRVEKKQRSRSPAAPFTTSTLQQEAVRKLGFTTSRAMRVAQQLYEGMD 295
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GT GLITYMRTD I+ EA +IR + + + + + P+ +Y K K+AQEAH
Sbjct: 296 VGSGTV-GLITYMRTDSFSIAAEAIAQIRDYVKKNFDAEYLPKAA-IQYKTKSKSAQEAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPTDI R PA + L ++ KLY +IW R +ACQM PA + VD+ ++ +F
Sbjct: 354 EAIRPTDISRTPASVRQYLTDEQFKLYEMIWKRALACQMAPAKFDAVSVDLSVGSDANLF 413
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+S + F GF A Y + E++ L L+TG+ L + ++ QH
Sbjct: 414 RASGQTLVFPGFIAVYMEGTDDEEEEGESK----------LPHLETGEVLTVEKIYGDQH 463
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RY E SLVK LEE GIGRPSTYAS + LQDR YV + + P GR+V+ F
Sbjct: 464 FTEPPPRYGEASLVKILEEYGIGRPSTYASIISTLQDREYVLLDKKRFTPTDVGRVVNKF 523
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L+ +F++ DY FTA++E LD+V+ G EW L+ ++W F+ Q L VE+
Sbjct: 524 LTEHFTKYVDYGFTANLEDALDSVAEGEREWLPLMAEFWQGFNQ-----QLLSKADVERP 578
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGC---NQHPRCNYIAKTLY 1004
G+ L D +CP CG+ L ++SRFG FIGC N P+C+Y ++L
Sbjct: 579 -----GNELI------DEACPKCGK-PLQKQLSRFGT--FIGCTGYNDEPKCDY-KRSLN 623
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTG--YLPKRASV 1062
G Q ++ P +IG+ S ++++L +GPYG Y+QLG G PKR SV
Sbjct: 624 G------AAQVGSD---PIIIGNDDESGKEIMLMNGPYGPYLQLGLAVEGDKKKPKRVSV 674
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+ + LE A +L P +LG HP + I+ + R G V H S+PK
Sbjct: 675 PKEISLADMNLETAKMVLSLPRDLGLHPVTNKKIVANIGRFGPYVNHDAKFKSIPKTDSV 734
Query: 1123 NDVTLEKALEFLSG 1136
+ L+ A+ L+
Sbjct: 735 FTIDLDGAVALLAA 748
>gi|350560484|ref|ZP_08929324.1| DNA topoisomerase I [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349782752|gb|EGZ37035.1| DNA topoisomerase I [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 853
Score = 534 bits (1376), Expect = e-148, Method: Compositional matrix adjust.
Identities = 327/807 (40%), Positives = 459/807 (56%), Gaps = 55/807 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I YLG + VL SYGHVRDL + G+V PD F M +EV
Sbjct: 3 KNLVIVESPAKAKTIGKYLGPDFTVLASYGHVRDLVPKEGAVDPDAGFRMNYEVIERNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
L++I AL G++ LILA+DPDREGEAI+WH++E+L+++ L E TV RVVFHEIT+ +
Sbjct: 63 QLQAIARALKGSDALILATDPDREGEAISWHLLEILRERGLLGER-TVKRVVFHEITKKA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A+ R + +L+ A ARRALDYL+GFN+SPLLWRK+ SAGRVQS AL +IC+
Sbjct: 122 IQEAVAHPRGLSTDLINAQQARRALDYLVGFNLSPLLWRKIKRGLSAGRVQSPALRMICE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE I+ F+ +EYWT++A + E F A LTH ++L+Q + + A D
Sbjct: 182 REDAIERFETREYWTLDAQARRGEQ------PFTARLTHLDGQKLDQFDLNTEALASDAR 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
Q++ A + +VI K+ R P+ TSTLQQ+A+ KL F+A+ TM++AQ+LYEG+
Sbjct: 236 QRLLDAAQGSLRVISVEKKQRKRNPAAPFTTSTLQQEASRKLGFTASRTMRVAQQLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L G A GLITYMRTD + ++ EA EIR LI ERYG+ + P PR+Y K KNAQEA
Sbjct: 296 DLGSG-AIGLITYMRTDSVTLAGEAIAEIRGLIEERYGADNLPS-SPRQYKTKSKNAQEA 353
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT +RRLP + L D +LY LIW RTMACQM AT + D+ + +
Sbjct: 354 HEAIRPTSVRRLPEEVRQRLTSDQARLYELIWKRTMACQMVHATFDTVAADLAPGETAHR 413
Query: 767 FRSSCSRVEFLGFQAAYEDV--DAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVEL 824
FR++ S + GF A Y++ +AGA +E+ DR L L G + L +V
Sbjct: 414 FRATGSTLRHAGFIAVYQEGRDEAGA-----DEDEDRR-----LPELTEGMVVDLLDVSA 463
Query: 825 KQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMV 884
QH T+PP RY+E SLVK LEE GIGRPSTYAS + LQ R YV + + P GR+V
Sbjct: 464 DQHFTEPPPRYTEASLVKTLEEYGIGRPSTYASIISTLQSREYVEMDGKRFLPTDIGRIV 523
Query: 885 SAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV 944
+AFL+ +F+ DY FTA++E ELD+++ G +W +L +W F +++ + +
Sbjct: 524 NAFLTQHFTRYVDYDFTANLEDELDDIARGEKDWIPVLDGFWKDFRDQVED-KAVSVSRA 582
Query: 945 EKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
E + + G P R V ++ R+G IG A L
Sbjct: 583 EAVQSRELGTD-----PKSGRPVSV--------RMGRYGPIVQIGTRDDEEKPRFAGLLP 629
Query: 1005 GDDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
G ++ TL+ + + P+ +G P E V + G +G YV+ G K AS+
Sbjct: 630 GQKMDQVTLEEALALFKLPRDLGETPEG-EPVQVNVGRFGPYVKYGR-------KFASLG 681
Query: 1064 HIKDVDSITLEDALEL------LRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVP 1117
DV +I L ALE+ L ++ + P+ G I + R G + A +P
Sbjct: 682 PDDDVWTIELPRALEIVAEKKALDAQKHIQSFPEHG--IEVLNGRYGPYITDGTKNAKIP 739
Query: 1118 KNMKPNDVTLEKALEFLSGKDVRRCGR 1144
K+ +P +TLE+ E L+ RR R
Sbjct: 740 KDREPASLTLEECRELLAAAPERRGRR 766
>gi|344198254|ref|YP_004782580.1| DNA topoisomerase I [Acidithiobacillus ferrivorans SS3]
gi|343773698|gb|AEM46254.1| DNA topoisomerase I [Acidithiobacillus ferrivorans SS3]
Length = 861
Score = 534 bits (1376), Expect = e-148, Method: Compositional matrix adjust.
Identities = 296/699 (42%), Positives = 418/699 (59%), Gaps = 52/699 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK IQ YLGD ++VL SYGHVRDL + G+V + DF+M + H+
Sbjct: 5 LVIVESPAKAKTIQKYLGDDFQVLASYGHVRDLQPKEGAVDTEHDFAMRYAAIERNERHV 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GAE L LA+DPDREGEAI+WH+VE+L+++ L N+ RVVFHEIT+ +++
Sbjct: 65 DAITKALRGAEKLWLATDPDREGEAISWHLVELLRERHLLG-NMPTQRVVFHEITKKAVQ 123
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ REI +LV A ARRALDYL+GFN+SPLLWRK+ SAGRVQSAAL LIC+RE
Sbjct: 124 EAIANPREIAMDLVNAQQARRALDYLVGFNLSPLLWRKVRPGLSAGRVQSAALRLICERE 183
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI--- 588
EI+ F +EYWT+ + L + S F A LTH+Q K+L Q + +A I
Sbjct: 184 NEIEAFVSREYWTIASHLQQAGS------DFSARLTHWQDKKLEQFDVTESDQAAAIRSG 237
Query: 589 -EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
E ++ +V + ++S R+ P+ TSTLQQ+A+ KL F+A+ TM++AQ+LYEG+
Sbjct: 238 MEDDLSRQPLRVREVERKSRQRQPAAPFTTSTLQQEASRKLGFNASRTMRVAQQLYEGIN 297
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ + T GLI+YMRTD +++++EA IR I YG PE PR+Y K KNAQEAH
Sbjct: 298 IGNETV-GLISYMRTDAVNLAEEAIASIRDFIGGHYGGEFVPET-PRRYKTKTKNAQEAH 355
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPTDI R P L G+L+ D +LY LIW R++ACQM PA + + VD+ +A
Sbjct: 356 EAIRPTDIARTPEALQGVLERDLWRLYDLIWKRSIACQMAPARMDLVAVDM-DAGTHWTL 414
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S V F GF A Y++ ++ D E IL L TGD + ++ +QH
Sbjct: 415 RANGSTVTFPGFMAVYQE---------GKDDGDEDEGNRILPPLNTGDEPQVLDINPEQH 465
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYS+ +LVK LE GIGRPSTYAS ++ LQ+R YV V+ R P GR+V F
Sbjct: 466 FTEPPPRYSDATLVKTLEAHGIGRPSTYASIIQTLQNREYVAVEQRRFRPTDLGRVVGRF 525
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L+++F DY FTA ME ELD +S G +W+ +L +W F + + ++ + E
Sbjct: 526 LTNHFERYVDYGFTASMEDELDAISRGEKQWQPVLSAFWGPFRALLD--EKANVSRTEAT 583
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
E D +CP CG+ L ++ R G F+ C+ +P CNY + + G
Sbjct: 584 SEAL------------DEACPQCGK-PLFLRLGRH--GRFVACSGYPECNYT-RPVDGPR 627
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYV 1046
+ + + R+ P + ++ K+G YG ++
Sbjct: 628 EPAEPVGRDC-----------PDCGKPLVYKTGRYGRFI 655
Score = 46.2 bits (108), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 966 SCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+CP CGEG L+ K SR+G F CN +P+CNY
Sbjct: 678 TCPECGEGELVEKRSRYGK-IFYSCNTYPKCNY 709
>gi|198282164|ref|YP_002218485.1| DNA topoisomerase I [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667808|ref|YP_002424529.1| DNA topoisomerase I [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198246685|gb|ACH82278.1| DNA topoisomerase I [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218520021|gb|ACK80607.1| DNA topoisomerase I [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 851
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 299/700 (42%), Positives = 424/700 (60%), Gaps = 54/700 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK IQ YLGD ++VL SYGHVRDL + G+V + DF+M + H+
Sbjct: 5 LVIVESPAKAKTIQKYLGDDFQVLASYGHVRDLQPKEGAVDTEHDFAMRYTPIERNERHV 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AL GA+ L LA+DPDREGEAI+WH+VE+L+++ L + T RVVFHEIT+ +++
Sbjct: 65 DAIAKALRGADKLWLATDPDREGEAISWHLVELLRERQLLGDKPT-QRVVFHEITKKAVQ 123
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ REI +LV A ARRALDYL+GFN+SPLLWRK+ SAGRVQSAAL LIC+RE
Sbjct: 124 EAIAHPREIAMDLVNAQQARRALDYLVGFNLSPLLWRKVRPGLSAGRVQSAALRLICERE 183
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI--- 588
EI+ F +EYWT+ + L S +F LTH+Q+K+L Q I +A+ I
Sbjct: 184 NEIEAFVSREYWTIASRLQHAGS------AFTGRLTHWQNKKLEQFDIADGDQAQAIRSG 237
Query: 589 -EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
E + +V + ++S R+ P+ TSTLQQ+A+ KL F+A+ TM++AQ+LYEG+
Sbjct: 238 MEDDLGRQALRVREVERKSRQRQPAAPFTTSTLQQEASRKLGFNASRTMRVAQQLYEGIN 297
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ + T GLI+YMRTD +++++EA IR+ I YGS PE PR+Y K KNAQEAH
Sbjct: 298 IGNETV-GLISYMRTDAVNLAEEAIASIRTFIDGYYGSEFVPET-PRRYKTKTKNAQEAH 355
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPTDI R P L G+L+ D +LY L+W R++ACQM PA + + VD+ +A
Sbjct: 356 EAIRPTDIARTPESLQGVLERDLWRLYDLVWKRSIACQMAPARLDLVAVDM-DAGTHWTL 414
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGD-PLYLGEVELKQ 826
R++ S V F GF A Y++ ++ D E+ IL L GD PL LG ++ +Q
Sbjct: 415 RANGSTVTFPGFMAVYQE---------GKDDGDEDESNRILPPLDVGDEPLVLG-IDPEQ 464
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RYS+ +LVK LE GIGRPSTYAS ++ LQ+R YV V+ R +P GR+V
Sbjct: 465 HFTEPPPRYSDATLVKTLEAHGIGRPSTYASIIQTLQNREYVAVEQRRFHPTDLGRVVGR 524
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL ++F DY FTA ME ELD VS G +W+ +L +WS F + + ++ + E
Sbjct: 525 FLINHFERYVDYGFTASMEDELDAVSRGEKQWQPVLSAFWSPFRALLD--EKANVSRAEA 582
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
E + +CP CG+ L ++ R G F+ C+ +P CNY + + G
Sbjct: 583 TSEAL------------EEACPQCGK-PLFLRLGRH--GRFVACSGYPECNYT-RPVDGP 626
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYV 1046
+ + + R+ P + ++ K+G YG ++
Sbjct: 627 REPAEPVGRDC-----------PDCGKPLVYKTGRYGRFI 655
Score = 43.9 bits (102), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 966 SCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+CP CGEG L+ K SR+G F CN +P+C Y
Sbjct: 678 TCPQCGEGELVEKRSRYGK-VFYSCNTYPKCTY 709
>gi|357406745|ref|YP_004918669.1| DNA topoisomerase 1 [Methylomicrobium alcaliphilum 20Z]
gi|351719410|emb|CCE25086.1| DNA topoisomerase 1 [Methylomicrobium alcaliphilum 20Z]
Length = 771
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 305/707 (43%), Positives = 427/707 (60%), Gaps = 60/707 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG + VL SYGHVRDL + G+V P+ DF+M +E+ H
Sbjct: 4 NLVIVESPAKAKTIEKYLGKDFHVLASYGHVRDLVPKEGAVDPEHDFAMKYEIIERNQRH 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+++I A+ A+ L LA+DPDREGEAI+WH+ E+L+ + L + V RVVFHEIT+ ++
Sbjct: 64 VQAITKAIKQAQALYLATDPDREGEAISWHLYELLKDKKLLKDK-PVHRVVFHEITKKAV 122
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ E+ +L+ A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +R
Sbjct: 123 TEAIAHPAELSIDLINAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIVER 182
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI+ FK +EYWT++A L +E +F A LTHF+ +++ Q +I + A ++Q
Sbjct: 183 ELEIEAFKSREYWTIDAELSAEEQ------AFKAKLTHFEGEKVEQFTIDNEERALQVKQ 236
Query: 591 KINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+ A V K K+ R P+ITSTLQQ+AA KL F+ TM +AQ+LYEG+
Sbjct: 237 TLFDAADGKLLVAKVEKKQRKRNPAPPFITSTLQQEAARKLGFTTKRTMMVAQQLYEGID 296
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ G GLITYMRTD ++++ EA EIR LI E+YG+ + P+ PR Y K KNAQEAH
Sbjct: 297 I-GGETVGLITYMRTDSVNLAAEAIAEIRELIAEKYGAKNVPK-SPRDYKTKSKNAQEAH 354
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT RR+P L L + KLY LIW RT++ QM AT+ + VD+ E VF
Sbjct: 355 EAIRPTSARRIPVELQKFLSPEQFKLYDLIWKRTISSQMVHATINTVAVDLHCGSERNVF 414
Query: 768 RSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
R++ S + GF A Y E D A E D E F L SL+ G P+ L ++ Q
Sbjct: 415 RATGSTIADPGFMAVYLEGKDDTA-------EGDDKENF--LPSLEEGRPVPLNDIIAGQ 465
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RYSE SLVK LEE GIGRPSTYAS + LQ+R+YVT++S+ YP GR+V+
Sbjct: 466 HFTEPPPRYSEASLVKALEEFGIGRPSTYASIISTLQNRDYVTLESKRFYPTDVGRIVNK 525
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL+ +F++ DY FTA++E ELD VS G +W L+ +W F++ IH+ E+
Sbjct: 526 FLTEHFNKYVDYDFTANLEDELDAVSRGEKDWIPLMRSFWEPFNTL--------IHEKEE 577
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+++ D ++ D CP CG L ++ R G FIGC +P C+Y
Sbjct: 578 SVQRK--DVTQEAI---DEKCPECG-SPLSIRLGR--NGRFIGCTNYPECSYT------- 622
Query: 1007 DDEEDTLQRNTNVD-----EPKLIGHH--PASKEKVLLKSGPYGFYV 1046
RN N D EP+++ P + +++K+G YG ++
Sbjct: 623 --------RNLNEDASKSSEPEVVEGRVCPKCESPLVIKTGRYGKFI 661
>gi|91763193|ref|ZP_01265157.1| DNA topoisomerase I [Candidatus Pelagibacter ubique HTCC1002]
gi|91717606|gb|EAS84257.1| DNA topoisomerase I [Candidatus Pelagibacter ubique HTCC1002]
Length = 863
Score = 531 bits (1367), Expect = e-147, Method: Compositional matrix adjust.
Identities = 301/780 (38%), Positives = 443/780 (56%), Gaps = 56/780 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++VVVES KAK I YLGD Y VL SYGH+RDL +++GSV P+++F M WEV S + +
Sbjct: 2 NLVVVESPAKAKTINKYLGDDYIVLASYGHIRDLPSKNGSVDPENNFKMEWEVDSFSKKY 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK I A + +ILA+DPDREGEAIAWH+ E L ++ + + + RVVF+EIT+ ++
Sbjct: 62 LKEITDAAKISSKIILATDPDREGEAIAWHVKEYLNEKKLIKDK-HIERVVFNEITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
++ R+I+ LV AY+ARRALDYL+GFNISP+LW KLPG +SAGRVQS AL LI +R
Sbjct: 121 IHGIENPRQIEPLLVDAYMARRALDYLVGFNISPILWTKLPGSKSAGRVQSVALKLITER 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F P+E+WT+ + + +S+ A +T K++ + S + E +
Sbjct: 181 EHEIELFDPEEFWTLSIQFNDSDKNSI-----LASITQLNDKKIEKFSFKNKAEIDKAME 235
Query: 591 KINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++ S NF I + +V +NP+ P+ TSTLQQ ++ +L F A+ TM++AQKLY+G+++
Sbjct: 236 EVKSKNFN-INDISSKVVNRNPSGPFTTSTLQQVSSGRLGFGASRTMQIAQKLYQGIEI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
DG GLITYMRTDG ++S +A R I +G + P+ KK KNAQEAHEA
Sbjct: 294 DGETIGLITYMRTDGTNLSTDAIDTFRKYIKNEFGDEYVPDNAASYSGKKAKNAQEAHEA 353
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPTDI R P + L D KLY LIWSR ++ QM+PA + + I + D + ++
Sbjct: 354 IRPTDIMRAPDTVKKYLSPDQHKLYDLIWSRALSSQMKPAQFDRNTITISSDDNGTICKA 413
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S S ++F GF K ++ + + IL + G P+ + + +QH T
Sbjct: 414 SGSVIKFDGF-------------LKVMKDTKKDDDEDILPEMNKG-PVNIESLLDEQHFT 459
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RYSE SLVKKLEELGIGRPSTYAS + V+ R Y ++ +P RG+++SAFL
Sbjct: 460 QPPPRYSEASLVKKLEELGIGRPSTYASIISVISTRGYAETINKRFHPTDRGKLISAFLE 519
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
FS+ DY+FTA +E +LD+++ G W +L +W F+ + + +V +L
Sbjct: 520 KLFSKYVDYNFTASLENQLDDITTGKEGWIKVLELFWKDFNQNVSDVKEKRTREVLDLLN 579
Query: 950 KTFGDSLFA--SLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
+ G +F + N +R C +C G+L K S F G FIGC+ +P C +
Sbjct: 580 DSLGSLIFERDADGNINRQCKLCDSGSLSLKNS-FRGGAFIGCSNYPDCKFTRPL----- 633
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLP---------- 1057
+ + + EPK IG H + + LK+G +G Y+Q +
Sbjct: 634 -SKAKAAAQSQLAEPKFIGKHENGND-MYLKNGRFGPYLQYEKIEEIKEKIIIETKKKKK 691
Query: 1058 -------------KRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAG 1104
+ S+ +DS+ L+ A L P +LG +P++ + I+L R G
Sbjct: 692 TKKKKIEKEDNNLRNVSIPKGITLDSVDLDRAKFLCSLPKSLGINPENQKDIILNSGRFG 751
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 17/120 (14%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
PK +G +P +++ ++L SG +G Y++ K A + +++++ SI L A+ L+
Sbjct: 730 PKSLGINPENQKDIILNSGRFGPYLKCEN-------KSARIENVEEIFSIGLNRAITLIA 782
Query: 1081 ---------RYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKAL 1131
+LG HP+D +P+ + + G ++++ A++P+ P ++ +E+AL
Sbjct: 783 EAKPGRMSASIIKDLGEHPEDKKPVRVMKGQYGPYIKYKSLNATIPEEKDPLELNMEEAL 842
>gi|289209437|ref|YP_003461503.1| DNA topoisomerase I [Thioalkalivibrio sp. K90mix]
gi|288945068|gb|ADC72767.1| DNA topoisomerase I [Thioalkalivibrio sp. K90mix]
Length = 854
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 321/814 (39%), Positives = 460/814 (56%), Gaps = 58/814 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES K K I+ YLG Y+V+ SYGHVRDL + G+V P++ F M ++V +
Sbjct: 3 KHLVIVESPAKGKTIEKYLGPDYQVMASYGHVRDLVPKEGAVDPENGFRMKYDVIERSEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+++I AL +++LILA+DPDREGEAI+WH+ E+L+ + L ++ V RVVFHEIT+ +
Sbjct: 63 QIEAIAKALKKSDDLILATDPDREGEAISWHLYEVLRDR-GLLDDRGVHRVVFHEITKKA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A++ R++ L+ A ARRALDYL+GFN+SPLLWRK+ SAGRVQS AL +IC+
Sbjct: 122 IQQAIEEPRDLAKPLIDAQQARRALDYLVGFNLSPLLWRKIKRGLSAGRVQSPALRMICE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F P+EYWT++A ++++E F A LT+ +L+Q + S A D +
Sbjct: 182 RENEIEAFVPREYWTLDAKVERQEQ------PFTARLTYLDGNKLDQFDLNSAELAHDAQ 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+++ A +V K K+ R P+ TSTLQQ+A+ KL F+A+ TM+ AQ+LYEG+
Sbjct: 236 KRLTEAANGELRVAKVEKKQRRRNPAAPFTTSTLQQEASRKLGFTASRTMRTAQQLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L G A GLITYMRTD + ++ EA EIR LI ERYG+++ P+ PR+Y K KNAQEA
Sbjct: 296 DLGSG-AIGLITYMRTDSVALAGEAIGEIRGLIEERYGANNVPD-SPRQYKTKSKNAQEA 353
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT +RRLP + L D +LY LIW RT+ACQM AT + D+ D
Sbjct: 354 HEAIRPTSVRRLPNEVRARLSSDQARLYDLIWKRTVACQMIHATFDTVAADLVPGDSRHQ 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ S + GF A Y++ G ++++E+ R L + GD + L EV Q
Sbjct: 414 FRATGSTLVDPGFIAVYQE---GRDDAQDDDEDKR------LPEMAEGDTVQLEEVTADQ 464
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RY+E SLVK LEE GIGRPSTYAS + LQ R YV + + P GR+V++
Sbjct: 465 HFTEPPPRYTEASLVKTLEEYGIGRPSTYASIISTLQSREYVEMDGKRFIPTDTGRIVNS 524
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL+ +F DY FTA +E ELD +S G +W +L D+W F + ++ + E
Sbjct: 525 FLTQHFDRYVDYDFTAKLEDELDAISRGEKDWVPVLEDFWGDFRDRVKEKEE-NVTRAEA 583
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ + G P+ PV ++ RFG IG A L G
Sbjct: 584 VQSRELG-------PDPQSGRPVS------VRLGRFGPIVQIGTKDDEEKPRFAGLLPGQ 630
Query: 1007 DDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
++ TL + + P+ +G P E V++ G +G YV+ G K AS+
Sbjct: 631 KMDKITLDEALELFKLPRDLGETPEG-EPVMVNIGRFGPYVKYGS-------KYASLGPD 682
Query: 1066 KDVDSITLEDALELL---------RYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASV 1116
DV +I L ALE++ R+ + D + I + R G V A +
Sbjct: 683 DDVWTIELPRALEIVAEKKKKDAERFIKSF-----DEEGIQVLNGRYGPYVTDGNKNAKI 737
Query: 1117 PKNMKPNDVTLEKALEFLSGKDVRRCGRPKGKPK 1150
PK P +TLE+ E ++ R+ KG K
Sbjct: 738 PKETDPKSLTLEQCQELIAAAPERKGRGRKGAAK 771
>gi|381150285|ref|ZP_09862154.1| DNA topoisomerase I, bacterial [Methylomicrobium album BG8]
gi|380882257|gb|EIC28134.1| DNA topoisomerase I, bacterial [Methylomicrobium album BG8]
Length = 774
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 309/706 (43%), Positives = 430/706 (60%), Gaps = 55/706 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I+ YLG ++VL SYGHVRDL + G+V PD F+M +EV
Sbjct: 3 KNLVIVESPAKAKTIEKYLGKDFQVLASYGHVRDLIPKEGAVDPDHHFAMKYEVIERNLR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I AL A+ L LA+DPDREGEAI+WH+ E+L+++ AL +N V RVVFHEIT+ +
Sbjct: 63 HVQAIGKALKDADALYLATDPDREGEAISWHLYELLKERKAL-KNKAVHRVVFHEITKKA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+ A+ E+ NL+ A ARRALDYL+GF +SPLLW+K+ SAGRVQS AL +I +
Sbjct: 122 VTEAIAHPSELATNLINAQQARRALDYLVGFKLSPLLWKKIRRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
REMEI+ FK +EYWT++A+L + D +F A LTH ++LNQ S+ A
Sbjct: 182 REMEIEAFKSREYWTIDALL------TADEQNFKAKLTHLAGEKLNQFSMTDRQTADRAR 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
Q + A V K K+ R P+ TSTLQQ+AA KL F+ TM +AQ+LYEG+
Sbjct: 236 QALLEAADGRLIVSKLEKKQQKRNPAPPFTTSTLQQEAARKLGFTTKRTMMVAQQLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ G AGLITYMRTD +++S EA E+R +I E YG + P+E PR + K KNAQEA
Sbjct: 296 DI-GGETAGLITYMRTDSVNLSVEAVAEMREMIAENYGPENVPKE-PRIFKTKSKNAQEA 353
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADES 764
HEAIRPT R PA L L ++ KLY LIW RT+ACQM AT+ I VD+ G +E
Sbjct: 354 HEAIRPTYPRYQPAQLKKHLSDEQFKLYDLIWKRTIACQMAQATINMIAVDLTCGERNEH 413
Query: 765 IVFRSSCSRVEFLGFQAAYED--VDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
VFR++ S + GF A Y + DAG ++D E+F L L G P+ L ++
Sbjct: 414 -VFRATGSTIASPGFMAVYLEGRDDAG--------DSDDKESF--LPPLAEGRPVPLNDI 462
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
QH T+PP RYSE SLVK LEE GIGRPSTYAS + LQ+R+Y T++++ +P GR
Sbjct: 463 VNAQHFTEPPPRYSEASLVKALEEHGIGRPSTYASIISTLQNRDYATLENKRFHPTDVGR 522
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ FL+ +F++ DY FTA +E +LD VS G +W L+ ++W+ F++ I
Sbjct: 523 IVNKFLTEHFTKYVDYDFTAKLEDDLDAVSRGEKDWIPLMGEFWNPFNTL--------IQ 574
Query: 943 QVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
+ ++ +++ D +L D SCP CG L ++ R G FIGC +P C+Y +
Sbjct: 575 EKDENVQRK--DVTQEAL---DESCPECG-SPLSIRLGR--NGRFIGCTNYPGCSY-TRN 625
Query: 1003 LYGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
L D +E EP+++ P ++LKSG YG ++
Sbjct: 626 LNEDQNE---------AAEPEVVDGRTCPKCASPLVLKSGRYGKFI 662
>gi|71083771|ref|YP_266491.1| DNA topoisomerase I [Candidatus Pelagibacter ubique HTCC1062]
gi|71062884|gb|AAZ21887.1| DNA topoisomerase I [Candidatus Pelagibacter ubique HTCC1062]
Length = 863
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 301/780 (38%), Positives = 442/780 (56%), Gaps = 56/780 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++VVVES KAK I YLGD Y VL SYGH+RDL +++GSV P+++F M WEV S + +
Sbjct: 2 NLVVVESPAKAKTINKYLGDDYIVLASYGHIRDLPSKNGSVDPENNFKMEWEVDSFSKKY 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK I A + +ILA+DPDREGEAIAWH+ E L ++ + + + RVVF+EIT+ ++
Sbjct: 62 LKEITDAAKISSKIILATDPDREGEAIAWHVKEYLNEKKLIKDK-HIERVVFNEITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
++ R+I+ LV AY+ARRALDYL+GFNISP+LW KLPG +SAGRVQS AL LI +R
Sbjct: 121 IHGIENPRQIEPLLVDAYMARRALDYLVGFNISPILWTKLPGSKSAGRVQSVALKLITER 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F P+E+WT+ + +S+ A +T K++ + S + E +
Sbjct: 181 EHEIELFDPEEFWTLSIQFNDSNKNSI-----LASITQLNDKKIEKFSFKNKAEIDKAMK 235
Query: 591 KINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++ S NF I + +V +NP+ P+ TSTLQQ ++ +L F A+ TM++AQKLY+G+++
Sbjct: 236 EVKSKNFN-INDISSKVVNRNPSGPFTTSTLQQVSSGRLGFGASRTMQIAQKLYQGIEI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
DG GLITYMRTDG ++S +A R I +G + P+ KK KNAQEAHEA
Sbjct: 294 DGETIGLITYMRTDGTNLSTDAIDTFRKYIKNEFGDEYVPDNAASYSGKKAKNAQEAHEA 353
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPTDI R P + L D KLY LIWSR ++ QM+PA + + I + D + ++
Sbjct: 354 IRPTDIMRAPDTVKKYLSPDQHKLYDLIWSRALSSQMKPAQFDRNTITITSDDNGTICKA 413
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S S ++F GF K ++ + + IL + G P+ + + +QH T
Sbjct: 414 SGSVIKFDGF-------------LKVMKDTKKDDDEDILPEMNKG-PVNIESLLDEQHFT 459
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RYSE SLVKKLEELGIGRPSTYAS + V+ R Y ++ +P RG+++SAFL
Sbjct: 460 QPPPRYSEASLVKKLEELGIGRPSTYASIISVISTRGYAETINKRFHPTDRGKLISAFLE 519
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
FS+ DY+FTA +E +LD+++ G W +L +W F+ + + +V +L
Sbjct: 520 KLFSKYVDYNFTASLENQLDDITTGKEGWIKVLELFWKDFNQNVSDVKEKRTREVLDLLN 579
Query: 950 KTFGDSLFA--SLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
+ G +F + N +R C +C G+L K S F G FIGC+ +P C +
Sbjct: 580 DSLGSLIFERDTEGNINRQCKLCNGGSLSLKNS-FRGGAFIGCSNYPDCKFTRPL----- 633
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLP---------- 1057
+ + + EPK IG H + + LK+G +G Y+Q +
Sbjct: 634 -SKAKAAAQSQLAEPKFIGKHENGND-MYLKNGRFGPYLQYEKIEEIKDEIIIETKKKKK 691
Query: 1058 -------------KRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAG 1104
+ S+ +DS+ L+ A L P +LG +P++ + I+L R G
Sbjct: 692 TKKKKIEKEDNNLRNVSIPKGITLDSVDLDRAKFLCSLPKSLGINPENQRDIILNSGRFG 751
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 17/120 (14%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
PK +G +P ++ ++L SG +G Y++ K A + +++++ SI L A+ L+
Sbjct: 730 PKSLGINPENQRDIILNSGRFGPYLKCEN-------KSARIENVEEIFSIGLNRAITLIA 782
Query: 1081 ---------RYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKAL 1131
+LG HP+D +P+ + + G ++++ A++P+ P ++ +E+AL
Sbjct: 783 EAKPGRMSASIIKDLGEHPEDKKPVRVMKGQYGPYIKYKSLNATIPEEKDPLELNMEEAL 842
>gi|302829961|ref|XP_002946547.1| hypothetical protein VOLCADRAFT_115956 [Volvox carteri f.
nagariensis]
gi|300268293|gb|EFJ52474.1| hypothetical protein VOLCADRAFT_115956 [Volvox carteri f.
nagariensis]
Length = 1309
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 342/945 (36%), Positives = 471/945 (49%), Gaps = 168/945 (17%)
Query: 347 PSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSA 406
P ++VVVES TKAK IQG+LGD Y+V+ SYGH+ DL +R GSVRPDDDFS+ W++
Sbjct: 151 PQQPALVVVESPTKAKKIQGFLGDKYKVVASYGHIHDLPSREGSVRPDDDFSLDWQLVPG 210
Query: 407 AWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEIT 466
A L+ I A +G L+LA+DPDREGEAI+WHI L+++ LH +V R+ F EIT
Sbjct: 211 AGPRLEQIAGAAAGCPLLLLATDPDREGEAISWHIQRELERRKVLHRFGSVQRITFTEIT 270
Query: 467 EASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSL 526
+++ AL A R + LV AYLARRALDYL+GF++SP+LWRKLPG +SAGRVQS AL L
Sbjct: 271 RSALTTALGAGRPVSQPLVDAYLARRALDYLLGFHLSPVLWRKLPGAKSAGRVQSVALRL 330
Query: 527 ICDREMEIDEFKPQEYWTVEAVLD-KKESH--SLDTFSFPAHLTHFQSKRLNQLSIGSHT 583
+C+RE E++ F P YW++ A L +++H SF A LTH +RL + I S
Sbjct: 331 VCEREAEVERFTPTPYWSITANLTINQDNHRQPPSPASFSARLTHVDGRRLGPMDIRSGE 390
Query: 584 EAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLY 643
A + +I S V + ++R + R P+ T++LQQ+A+ +L F A TM++AQ+LY
Sbjct: 391 VAGQLADRIRSGPVVVSRVTRRQLQRHPSPPFTTASLQQEASRRLGFGAAKTMRVAQQLY 450
Query: 644 EGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA 703
EG GT GLI+YMRTDG+ +S+EA ++R+ I YG P + PR+Y + KNA
Sbjct: 451 EGA----GTGEGLISYMRTDGVQMSEEAVGKLRTTIGVLYGDDFLPLQ-PRQYKSRAKNA 505
Query: 704 QEAHEAIRPTDIRRL-PAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
QEAHEAIRPT + P+ L LD D LY LI+ R MA QM A + V+
Sbjct: 506 QEAHEAIRPTHPATVTPSSLPPSLDADQRALYELIFRRAMASQMASAVYDVVTVEFSADG 565
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHE------------------- 803
S+ R+S S + GF AY D+ + E E H
Sbjct: 566 GSLTLRASGSLLRQSGFLRAYADLP---VSDTEEEGPQLHGEQEEEGGEGESTLARDDGG 622
Query: 804 --AFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKV 861
A L +L+ PL+ + +H T+PP RY+E SLV+ LEE GIGRPSTYA +
Sbjct: 623 GAAVQQLLALQVDCPLHTLSILPCEHSTRPPPRYTEASLVRTLEEKGIGRPSTYAPIMTR 682
Query: 862 LQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGL 921
LQDR YVT + R L P GR+++AFL HYF DY FT+ +E +LD+V+AG WK +
Sbjct: 683 LQDRGYVTREGRSLVPTGLGRVLTAFLEHYFPRYVDYDFTSILEGQLDDVAAGRAAWKAV 742
Query: 922 LVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPN------------------- 962
L +WS FS+ + +V + G S +
Sbjct: 743 LSAFWSPFSAAVAAMGKIRTGEVSSSSGSSNGSSGVIDVQGAVVSSPAVAPAAPAAALRA 802
Query: 963 --------KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPR----CNY------------ 998
R CP CG G L+ K SR+G FIGC+ + C+Y
Sbjct: 803 AAAAVVAPDPRLCPKCGRGRLVLKPSRYGG--FIGCSLYADPAVVCDYSRPMMRLGPIPH 860
Query: 999 --------------------------------IAKTLYGDDDEEDT---LQRNTNVDEPK 1023
I+ + G+ + +T + N E +
Sbjct: 861 RPTPPDRSREGRIPAPRKHIGPRIDSAALPPAISSSSDGEGEAVETSPSAALSCNATE-R 919
Query: 1024 LIGHHPASKEKVLLKSGPYGFYVQLGED-------------RTGYLP------------- 1057
L+G HP ++E V ++ GPYG YVQLG R G P
Sbjct: 920 LLGSHPETREPVWVRLGPYGLYVQLGNSAPKAPKKKAAAPKRRGRKPKSGVKAEGAGGTV 979
Query: 1058 -------------------------KRASVSHIKDVD--SITLEDALELLRYPVNLGNHP 1090
KRA++ K + S+ L AL LL P LG HP
Sbjct: 980 EEGGGESGAAEVEVEVEVEVEVKKPKRAAIPKAKGLTLHSVDLPTALALLALPRELGPHP 1039
Query: 1091 KDGQPIMLRLARAGFSVRHRRTIASVPKNMKPN-DVTLEKALEFL 1134
+DG P++ G V H AS+ + +V L A++ L
Sbjct: 1040 QDGLPVVANTGPFGPYVAHNGLSASLGRRAGSALEVDLASAVQLL 1084
>gi|412993206|emb|CCO16739.1| DNA topoisomerase I [Bathycoccus prasinos]
Length = 1147
Score = 524 bits (1350), Expect = e-145, Method: Compositional matrix adjust.
Identities = 343/914 (37%), Positives = 482/914 (52%), Gaps = 140/914 (15%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
KS+V+VES KAK I+ YLG Y VL + GHVRDL + GSV +++F M W
Sbjct: 113 KSLVIVESPAKAKTIENYLGKDYRVLATRGHVRDLVNKEGSVDFNNNFEMKWTATVQNAK 172
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQ------QDALHENIT------- 456
+++ I A + ++LA+DPDREGEAI+WH++EML++ +D T
Sbjct: 173 YMREIYDACKKCDAVVLATDPDREGEAISWHVLEMLKKKKLLSGEDKKATTTTTSSSGSS 232
Query: 457 --------VARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWR 508
V+RV F E+T+ ++ A REID LV AYLARRALDYL GF +S +LWR
Sbjct: 233 SSKSKSKHVSRVTFTEVTKNAVLEAFGKPREIDLRLVDAYLARRALDYLYGFTLSGVLWR 292
Query: 509 KLPGCQS--AGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHL 566
KLP S AGRVQSAAL L+ +RE E++ F P+ YW+V+A L + S D +F A L
Sbjct: 293 KLPNATSLSAGRVQSAALRLVVERETEVEAFVPKPYWSVQATLGGESSP--DRSAFDAKL 350
Query: 567 THFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKN-SKRSMVRKNPTPYITSTLQQDAA 625
F+ K++++ +I S A ++ ++I + ++K +++ R P+ TST+QQ+A+
Sbjct: 351 LSFEGKKISKFTIESDENAAEMVRRIKNTRAWIVKEVTEKETKRSAGPPFTTSTMQQEAS 410
Query: 626 NKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGS 685
+L F A+ M AQKLYEG DG LITY RTDG H S A E+R +I +
Sbjct: 411 KRLGFGASRCMSAAQKLYEGGSFGDG----LITYPRTDGTHASKTAVAEMRKVIEGIFSK 466
Query: 686 HHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDE--DCLKLYSLIWSRTMA 743
H P+E PR + KK KNAQEAHEAIRPT R P + L E D +LY+LIW+R+MA
Sbjct: 467 QHVPDE-PRYFRKKQKNAQEAHEAIRPTSAARHPKEVGKRLGEFSDEARLYALIWARSMA 525
Query: 744 CQMQPATVGQIQVDIGNAD----ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKE---- 795
QM ATV +I +D+ N + + IV R++ R+ F G+ AAY V A R KE
Sbjct: 526 SQMSSATVEKIALDVHNNESEKKKEIVLRANGHRLTFEGYLAAYNVVSAR--RGKEDDPE 583
Query: 796 ----NEENDRHEAF-----------------------AILNSLKTGDPLYLGEVELKQHH 828
NE++D E + L L GD +Y+ E +H
Sbjct: 584 DAQVNEDDDGDEKDSNEDDDDEDDSSSAASTSSPGNESWLPKLNQGDSIYVAECSPSRHE 643
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP R+SEG+LVK LEE GIGRPSTYAS L+ L R YV L P+ RG +VSAFL
Sbjct: 644 TAPPPRFSEGTLVKALEERGIGRPSTYASVLRALVARGYVAKNGAQLVPDSRGILVSAFL 703
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ YFS+ +Y FTA ME LD+V+ + LL D+W+ F S C ++ + V L
Sbjct: 704 ASYFSKYVEYDFTATMEDTLDDVANEQKRYTDLLTDFWTPFKSECEEVSTVEVRAVVDAL 763
Query: 949 EKTFGDSLFASL-----PNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIA--K 1001
++ G LF + +R CP C G L K S+ G FIGC+ +P C++ A +
Sbjct: 764 DERLGMHLFGRVDEDAEEGANRKCPSCENGRLGLKPSKQGG--FIGCSNYPACSFTAPLR 821
Query: 1002 TLYGDDDEEDTLQRNTNVDEPKLIGHHPASK--EKVLLKSGPYGFYVQLGEDRTGYL--- 1056
L G DE + PK +G P + ++V++K GPYG YV+L D T +
Sbjct: 822 PLKGLGDENSESAQMEAF--PKSLGFMPNTNNMKEVVMKMGPYGPYVEL-VDHTIVVPSA 878
Query: 1057 -------------------------------PKRASVSHI-KDVDSITLEDALELLRYPV 1084
P+R VS+I K + +TLEDAL L +P+
Sbjct: 879 EQVVEDESEEEDGSEKKKTKKTKKATQKAEKPRRVGVSNIGKKPEEVTLEDALYFLAFPI 938
Query: 1085 NLGNHPKDG--------------QPIMLRLARAGFSVRHRRTIASVP-KNMK------PN 1123
+LG H + + L L + G+ V+ T+AS+P K M+ P
Sbjct: 939 HLGEHATEAFVDEEKEINREAHCGEVTLSLGKFGYYVKFGETLASIPAKFMREELQNDPR 998
Query: 1124 DVTLEKALEFLSGK 1137
++TL +A + + K
Sbjct: 999 NMTLAQAKDLIEKK 1012
>gi|345863833|ref|ZP_08816041.1| DNA topoisomerase 1 [endosymbiont of Tevnia jerichonana (vent Tica)]
gi|345125159|gb|EGW55031.1| DNA topoisomerase 1 [endosymbiont of Tevnia jerichonana (vent Tica)]
Length = 764
Score = 524 bits (1349), Expect = e-145, Method: Compositional matrix adjust.
Identities = 297/701 (42%), Positives = 420/701 (59%), Gaps = 49/701 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KA I+ YLG +EVL SYGHVRDL + G+V P++ F+M ++V H
Sbjct: 2 NLVIVESPAKAGTIKKYLGSGFEVLASYGHVRDLIPKEGAVDPNNHFAMKYQVIERNERH 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
++ I L ++ L LA+DPDREGEAI+WH+ E+L+++ L +N V RVVF+EIT+ ++
Sbjct: 62 VQEIAKLLKRSDALYLATDPDREGEAISWHLTELLREKGKL-KNKPVYRVVFNEITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A+ RE+ LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL +I +R
Sbjct: 121 QEAIANPRELAQELVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRMIVER 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI+ FK +EYW++EA S D F A LTH Q +L+Q SI T AK E
Sbjct: 181 ELEIEAFKAREYWSIEA------DTSKDQHPFSAKLTHLQGDKLSQFSITDETSAKAAEA 234
Query: 591 KINSAN---FQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+ +A QV+K K+ R P+ TSTLQQ+A+ KL F+ TM+ AQ+LYEGV
Sbjct: 235 TLLAAGTDGLQVVKVEKKQRRRNPAPPFTTSTLQQEASRKLGFTTQRTMRTAQQLYEGVD 294
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ +GT GLITYMRTD ++++DEA E R I ERYG P+ PR + K KNAQEAH
Sbjct: 295 VGNGTV-GLITYMRTDSVNLADEALDEFREFIAERYGKDQIPD-APRHFKTKAKNAQEAH 352
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT + RLP + L +D +LY LIW R +ACQM AT+ + D+ E +F
Sbjct: 353 EAIRPTSVLRLPTEIKDHLSKDQARLYELIWKRAVACQMIHATIHTVAADL-QCGEGNIF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S + GF A Y + A + +E+ +L L+ G+ + L + +QH
Sbjct: 412 RANGSTIAKPGFIAVYMEGKDDAAKGDGDEK--------MLPPLQEGETVALKAIRPEQH 463
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP R++E SLVK LEE GIGRPSTYAS + LQDR YVT++ + P GR+V+ F
Sbjct: 464 FTEPPPRFTEASLVKTLEEYGIGRPSTYASIISTLQDREYVTLEKKRFQPTDVGRIVNKF 523
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L+ +F++ DY FTA +E ELD VS G W LL +W+ F I ++
Sbjct: 524 LTDHFTQYVDYDFTAKLEDELDAVSRGEEAWVPLLERFWTPFKE--------RIDYTQEN 575
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
++++ D +L D CP CG+ L ++ R G FIGCN +P+C+Y + L D
Sbjct: 576 VKRS--DVTHEAL---DEKCPKCGD-QLSIRLGRHGR--FIGCNNYPKCDY-TRDLNADK 626
Query: 1008 DEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
E+ DEP+++ P +++K G YG ++
Sbjct: 627 SEQ---------DEPQVVEGRSCPECGSPLVIKRGRYGKFI 658
>gi|345878646|ref|ZP_08830350.1| hypothetical protein Rifp1Sym_cm00040 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344224323|gb|EGV50722.1| hypothetical protein Rifp1Sym_cm00040 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 764
Score = 523 bits (1348), Expect = e-145, Method: Compositional matrix adjust.
Identities = 297/701 (42%), Positives = 420/701 (59%), Gaps = 49/701 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KA I+ YLG +EVL SYGHVRDL + G+V P++ F+M ++V H
Sbjct: 2 NLVIVESPAKAGTIKKYLGSGFEVLASYGHVRDLIPKEGAVDPNNHFAMKYQVIERNERH 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
++ I L ++ L LA+DPDREGEAI+WH+ E+L+++ L +N V RVVF+EIT+ ++
Sbjct: 62 VQEIAKLLKRSDALYLATDPDREGEAISWHLTELLREKGKL-KNKPVYRVVFNEITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A+ RE+ LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL +I +R
Sbjct: 121 QEAIANPRELAQELVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRMIVER 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI+ FK +EYW++EA S D F A LTH Q +L+Q SI T AK E
Sbjct: 181 ELEIEAFKAREYWSIEA------DTSKDQHPFSAKLTHLQGDKLSQFSITDETSAKAAEA 234
Query: 591 KINSAN---FQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+ +A QV+K K+ R P+ TSTLQQ+A+ KL F+ TM+ AQ+LYEGV
Sbjct: 235 TLLAAGTDGLQVVKVEKKQRRRNPAPPFTTSTLQQEASRKLGFTTQRTMRTAQQLYEGVD 294
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ +GT GLITYMRTD ++++DEA E R I ERYG P+ PR + K KNAQEAH
Sbjct: 295 VGNGTV-GLITYMRTDSVNLADEALDEFREFIAERYGKDQIPD-APRHFKTKAKNAQEAH 352
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT + RLP + L +D +LY LIW R +ACQM AT+ + D+ E +F
Sbjct: 353 EAIRPTSVLRLPTEIKDHLSKDQARLYELIWKRAVACQMIHATIHTVAADL-QCGEGNIF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S + GF A Y + A + +E+ +L L+ G+ + L + +QH
Sbjct: 412 RANGSTIAKPGFIAVYMEGKDDAAKGDGDEK--------MLPPLQEGETVALKAIRPEQH 463
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP R++E SLVK LEE GIGRPSTYAS + LQDR YVT++ + P GR+V+ F
Sbjct: 464 FTEPPPRFTEASLVKTLEEYGIGRPSTYASIISTLQDREYVTLEKKRFQPTDVGRVVNKF 523
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L+ +F++ DY FTA +E ELD VS G W LL +W+ F I ++
Sbjct: 524 LTDHFTQYVDYDFTAKLEDELDAVSRGEEAWVPLLERFWTPFKE--------RIDYTQEN 575
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
++++ D +L D CP CG+ L ++ R G FIGCN +P+C+Y + L D
Sbjct: 576 VKRS--DVTHEAL---DEKCPKCGD-QLSIRLGRHGR--FIGCNNYPKCDY-TRDLNADK 626
Query: 1008 DEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
E+ DEP+++ P +++K G YG ++
Sbjct: 627 SEQ---------DEPQVVEGRSCPECGSPLVIKRGRYGKFI 658
>gi|387130873|ref|YP_006293763.1| DNA topoisomerase I [Methylophaga sp. JAM7]
gi|386272162|gb|AFJ03076.1| DNA topoisomerase I [Methylophaga sp. JAM7]
Length = 760
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 305/705 (43%), Positives = 427/705 (60%), Gaps = 54/705 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G +V+VES KAK I+ YLG+ EVL SYGHVRDL + G+V P++DF+M ++V
Sbjct: 2 GNKLVIVESPAKAKTIKKYLGNNVEVLASYGHVRDLLPKEGAVDPENDFAMKYQVIDRNS 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AL A++L LA+DPDREGEAI+WH+ E+L+++ AL + T RVVFHEIT+
Sbjct: 62 KHVDAIAKALKKADSLYLATDPDREGEAISWHLYELLKKKGALKDK-TTHRVVFHEITKQ 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ RE+ +LV A ARRALDYL+GF +SPLLW+K+ SAGRVQS AL +I
Sbjct: 121 AVNDAVANPRELSMDLVNAQQARRALDYLVGFTLSPLLWKKVRRGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE+EI+ FK QEYWT+EA D + S S +F A LTH+Q ++L+Q SI + +A+ +
Sbjct: 181 ERELEIEAFKAQEYWTIEA--DAQTSGS----AFQAKLTHYQGEKLSQFSIDNTEQAESV 234
Query: 589 EQKINSA--NFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
K+N A ++ N ++ ++NP P+ TSTLQQ+A+ KL F A TM +AQ+LYEG
Sbjct: 235 VSKLNQAADGKLLVTNVEKKQRKRNPAAPFTTSTLQQEASRKLGFGAQRTMSVAQQLYEG 294
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
V +G A GLITYMRTD + ++ EA E+R LI ERYG+ P + P++Y K KNAQE
Sbjct: 295 VDTGEG-AVGLITYMRTDSVTLAAEAVSEVRELISERYGAKAVPAK-PQEYKTKSKNAQE 352
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEAIRPT R P + L D LKLY+L+W RT+A QM AT+ + VD+G +
Sbjct: 353 AHEAIRPTSALRTPEEMKAYLSVDQLKLYTLVWQRTVASQMIHATLNTVAVDLG-CGQGN 411
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
FR++ S V GF Y + +++++ D+ E +L +++ G+ + L ++ +
Sbjct: 412 TFRANGSTVVNPGFMQVY-------LEGQDDKKADKDEN--LLPAMEKGEVVSLDKIRPE 462
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PP RYSE SLV+ LEE IGRPSTYAS + L R YV + ++ +P GR+V
Sbjct: 463 QHFTEPPPRYSEASLVRSLEEHDIGRPSTYASIISTLLQREYVELINKRFHPTDVGRVVG 522
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYC-TCAQSLHIHQV 944
FL +F+ DYSFTA +E ELD VS G EW LL +W F S T +S+ V
Sbjct: 523 KFLVDHFTRYVDYSFTAKLEDELDAVSRGEEEWIPLLRSFWGPFKSQVETKDKSVQRSDV 582
Query: 945 EKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFG-AGYFIGCNQHPRCNYIAKTL 1003
+ L D +CP CG+ SR G +G FIGC +P C+Y
Sbjct: 583 TQEL--------------LDENCPKCGKQL----SSRLGRSGRFIGCTGYPDCDYTRNM- 623
Query: 1004 YGDDDEEDTLQRNTNVDEP-KLIGHH-PASKEKVLLKSGPYGFYV 1046
D EE T EP K+ G P ++ ++G YG ++
Sbjct: 624 ---DGEE------TTASEPEKVEGRQCPKCDSDLIFRTGRYGKFI 659
>gi|333985904|ref|YP_004515114.1| DNA topoisomerase I [Methylomonas methanica MC09]
gi|333809945|gb|AEG02615.1| DNA topoisomerase I [Methylomonas methanica MC09]
Length = 772
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 301/707 (42%), Positives = 431/707 (60%), Gaps = 56/707 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
KS+V+VES K K I+ YLG ++VL SYGHVRDL + G+V P+ F+M ++V
Sbjct: 3 KSLVIVESPAKCKTIEKYLGKDFQVLASYGHVRDLIPKEGAVDPEHGFAMKYQVIDRNQR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
HL+ I AL A+ L LA+DPDREGEAI+WH+ E L+++ L ++ V RVVFHEIT+ +
Sbjct: 63 HLQEIGKALKNADTLYLATDPDREGEAISWHVFEHLKEK-KLLKDKQVLRVVFHEITKKA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+ A++ E+ +V A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL +I +
Sbjct: 122 VTEAIEHPTELSLTMVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFS----FPAHLTHFQSKRLNQLSIGSHTEA 585
RE+EI+ FK +EYW SH+ D + F A LTHF ++L Q SI T+A
Sbjct: 182 RELEIEAFKTREYW----------SHTADASAQGQPFKAKLTHFNGEKLTQFSITDETQA 231
Query: 586 KDIEQKI-NSANFQ-VIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKL 642
++Q + ++ + Q ++ ++ KNP P +ITSTLQQ+AA KL F+ TM +AQ+L
Sbjct: 232 NQVKQALLDAGDGQLIVAKLEKKQRSKNPAPPFITSTLQQEAARKLGFTTKRTMMVAQQL 291
Query: 643 YEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
YEG+ L G GLI+YMRTD ++++DEA +IR+LI E+YG+ + P+E PR++ K KN
Sbjct: 292 YEGIDL-GGETVGLISYMRTDSVNLADEALADIRALIAEKYGAGNVPKE-PRQFKTKSKN 349
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
AQEAHEAIRPT ++RLP + L + KLY LIW RT+ACQM AT+ + VD+
Sbjct: 350 AQEAHEAIRPTSVQRLPEQVKERLTVEQFKLYDLIWKRTVACQMIHATLNLVAVDLNCGS 409
Query: 763 ESIVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGE 821
+ VFR++ S V GF Y E VD + ++ DR +L ++ G P+ L +
Sbjct: 410 DKNVFRATGSTVTNPGFMMVYLEGVDDSK---EATDDQDR-----LLPPMEEGRPVVLND 461
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRG 881
V QH T+PP RYSE SLVK LEE GIGRPSTYA+ + LQ+R YVT+ S+ YP G
Sbjct: 462 VTANQHFTEPPPRYSEASLVKALEEHGIGRPSTYATIISTLQNREYVTIDSKRFYPTDVG 521
Query: 882 RMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI 941
R+V+ FL+ +F++ DY FTA++E +LD V+ G +W L+ D+W F+ I
Sbjct: 522 RIVNKFLTEHFTKYVDYDFTANLEDDLDAVARGEKDWIPLMNDFWRPFTQL--------I 573
Query: 942 HQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK 1001
+ E+ +++ D S+ D CP CG L ++ R G F+GC +P C+Y
Sbjct: 574 SEKEESVQRK--DVTQESI---DEQCPECG-SPLSIRLGR--NGRFVGCTNYPTCSYTRN 625
Query: 1002 TLYGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
G+D T EP+++ P +++K+G YG +V
Sbjct: 626 --LGEDSAAATA-------EPEVVEGRVCPKCASPLVIKTGRYGKFV 663
>gi|406915142|gb|EKD54255.1| hypothetical protein ACD_60C00105G0013 [uncultured bacterium]
Length = 780
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 300/724 (41%), Positives = 432/724 (59%), Gaps = 56/724 (7%)
Query: 332 VIVPRGQNTQNPLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSV 391
+++P+ ++ K++++VES KAK I+ YLG ++VL SYGHVRDL + G+V
Sbjct: 1 MLMPKSKSASPAKTKAKTKNLIIVESPAKAKTIKKYLGKGFDVLASYGHVRDLLPKEGAV 60
Query: 392 RPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDAL 451
P DF+M +E+ H+ +I A+ ++ L LA+DPDREGEAI+WH+ E+L+Q+ L
Sbjct: 61 DPKHDFAMKYELIEKNTKHMTAIVNAMKKSDALYLATDPDREGEAISWHVCEVLKQKKVL 120
Query: 452 HENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLP 511
+N V RVVFHEIT+++++ A++ R I LV A ARRALD+L+GFN+SPLLWRK+
Sbjct: 121 -KNKEVHRVVFHEITKSAVQSAIEHPRGISMELVNAQQARRALDFLVGFNLSPLLWRKIR 179
Query: 512 GCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFS----FPAHLT 567
SAGRVQS AL +I +RE EI++F QEYW + A D F+ F A LT
Sbjct: 180 RGLSAGRVQSPALRMIVEREEEIEKFVSQEYWDIGA----------DAFAHDQAFTAKLT 229
Query: 568 HFQSKRLNQLSIGSHTEAKDIE---QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDA 624
++++++L Q SI + +A+ ++ +K + V K K+ R P+ITSTLQQ+A
Sbjct: 230 YYKNEKLEQFSITNSEQAEQVKADLEKAANGKLHVTKVEKKQRKRNPAAPFITSTLQQEA 289
Query: 625 ANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYG 684
A KL F+A TM+ AQ+LYEG+ + +G A GLI+YMRTD ++++ EA EIR LI ERYG
Sbjct: 290 ARKLGFTAHRTMRTAQQLYEGINIGNG-AVGLISYMRTDSVNLAGEAIAEIRHLIGERYG 348
Query: 685 SHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMAC 744
++ PEE PR Y K KNAQEAHEAIRPT + R P L L+ + +LY LIW RTMA
Sbjct: 349 KNNVPEE-PRLYKTKAKNAQEAHEAIRPTSVLRTPDSLKDFLNPEQYRLYDLIWKRTMAS 407
Query: 745 QMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHE 803
QM AT+ + VD+ D+ I FR++ S V GF Y E +D + + D +E
Sbjct: 408 QMISATIDTVAVDLTCGDKGI-FRANGSVVVDPGFILVYQEGID--------DHKTDHNE 458
Query: 804 AFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQ 863
+L L GD + L ++ QH T+PP RYSE +L+K LEE GIGRPSTYA+ + LQ
Sbjct: 459 EERLLPPLTEGDIVDLQGIKCNQHFTEPPPRYSEATLIKTLEEYGIGRPSTYAAIIYTLQ 518
Query: 864 DRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLV 923
R YV ++++ P GR+V+ FL+ +F+ DY+FTA +E ELD +S G EW LL
Sbjct: 519 YREYVILENKRFRPTDVGRIVNKFLTQHFTRYVDYNFTAKLEDELDEISRGEKEWVPLLD 578
Query: 924 DYWSRFSSYCTCAQSLHIHQVEKMLEKT-FGDSLFASLPNKDRSCPVCGEGTLIFKVSRF 982
++W F HQV+ +LE D +L D CP CG+ L ++ R+
Sbjct: 579 EFWKPFK-----------HQVDDVLETVKRSDVTQEAL---DEKCPDCGK-PLSIRLGRY 623
Query: 983 GAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPY 1042
F+GC +P C Y DE+ ++ V E ++ P + L++G Y
Sbjct: 624 SR--FVGCTAYPECKYTRNV-----DEDKSVSVPAEVVEGRVC---PQCAGPLQLRTGRY 673
Query: 1043 GFYV 1046
G ++
Sbjct: 674 GKFI 677
>gi|270157749|ref|ZP_06186406.1| DNA topoisomerase I [Legionella longbeachae D-4968]
gi|289163982|ref|YP_003454120.1| DNA topoisomerase I [Legionella longbeachae NSW150]
gi|269989774|gb|EEZ96028.1| DNA topoisomerase I [Legionella longbeachae D-4968]
gi|288857155|emb|CBJ10971.1| DNA topoisomerase I [Legionella longbeachae NSW150]
Length = 759
Score = 520 bits (1339), Expect = e-144, Method: Compositional matrix adjust.
Identities = 298/703 (42%), Positives = 424/703 (60%), Gaps = 51/703 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +VVVES KAK IQ YLG+ YEV+ SYGHVRDL AR GSV PD F+M +
Sbjct: 3 KHLVVVESPAKAKTIQKYLGNDYEVIASYGHVRDLPARKGSVNPDKQFAMTYVPIEKNAR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I L +++L+LA+DPDREGEAI+WHI E++++++ L ++ TV R+ F+EIT+++
Sbjct: 63 HIETIAKILKKSDSLLLATDPDREGEAISWHIYELMKEKN-LTKDKTVHRIFFNEITKSA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A+ R I +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +
Sbjct: 122 IQDAINHPRTISMDLVNAQQARRALDYLVGFNLSPLLWKKVRRGLSAGRVQSPALRLIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F QEYW + A S F A LTH++++++ Q +I + +A+ I+
Sbjct: 182 REEEIESFVAQEYWKILAQCFHANS------PFEARLTHYKNEKIQQFTIVNQEQAQQIK 235
Query: 590 QKI---NSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ + + V K+ RK P+ITSTLQQ+AA KL F+A TM +AQ+LYEG+
Sbjct: 236 EFLIDQAKGSLFVTNIEKKQRKRKPSPPFITSTLQQEAARKLGFTARKTMMVAQQLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ GT GLI+YMRTD +++S EA +EIR I ER+G+ + P PR Y K KNAQEA
Sbjct: 296 DIGTGTV-GLISYMRTDSVNLSVEAIEEIRQFITERFGAANCPT-SPRAYKTKSKNAQEA 353
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT I+R+P M+ L D KLY+LIW RT+ACQM A + + VD+ E +
Sbjct: 354 HEAIRPTSIKRVPEMVQSSLTTDQYKLYNLIWKRTIACQMADAVLDTVAVDL-TCGEGTI 412
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ S V F GF + YE+ A +++END ++L L G+ + + ++ Q
Sbjct: 413 FRANGSTVTFPGFLSVYEEGRDDA----KDDENDG----SLLPVLVVGEKVNVQDILANQ 464
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RYSE +LVK LEE IGRPSTYA+ + LQ R YV V + +P GR+V+
Sbjct: 465 HFTEPPPRYSEATLVKALEEYDIGRPSTYATIIHTLQQREYVVVDKKRFFPTDVGRIVNR 524
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL+ YF+ DY FTA++E LD VS G EW +L ++W F + Q++
Sbjct: 525 FLTGYFTRYVDYKFTAELEDTLDAVSRGEKEWIPVLDEFWKPF-----------VQQIKT 573
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAKTLYG 1005
E+ + + + D CP C + I R G G FIGC +P C+Y + + G
Sbjct: 574 TDEQVQRKDVTSEV--LDEKCPKCEKPLSI----RLGKRGRFIGCTGYPECDY-TQDIAG 626
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
++E+ EP++I P + +K G YG ++
Sbjct: 627 QENEK---------KEPEVIEGRVCPECSSPLHIKVGRYGRFI 660
>gi|146329654|ref|YP_001209082.1| DNA topoisomerase I [Dichelobacter nodosus VCS1703A]
gi|146233124|gb|ABQ14102.1| DNA topoisomerase I [Dichelobacter nodosus VCS1703A]
Length = 802
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 329/811 (40%), Positives = 455/811 (56%), Gaps = 64/811 (7%)
Query: 348 SGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAA 407
S K +++VES KAK + YLG+ YEVL SYGHVRDL ++G+V P++DF+M +E+
Sbjct: 2 SYKHLLIVESPAKAKTLHKYLGNDYEVLASYGHVRDLIPKNGAVEPENDFAMNYELIERN 61
Query: 408 WTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITE 467
H+ I+ AL A+ L+LA+DPDREGEAI+WH+ E+LQ++ L E TV RVVF+EIT+
Sbjct: 62 AKHVAQIEKALKNADELLLATDPDREGEAISWHLFELLQEKGVLAEK-TVKRVVFYEITQ 120
Query: 468 ASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLI 527
+I A+ A R+I+ NLV A ARRALDYL+GFN+SPLLWRK+ SAGRVQS AL +I
Sbjct: 121 RAILQAVSAPRDIEMNLVNAQQARRALDYLVGFNLSPLLWRKVRPGLSAGRVQSPALRMI 180
Query: 528 CDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTE--- 584
+RE EID F+ QE+W + A +KE F A LT F ++L Q S +
Sbjct: 181 VEREREIDAFQAQEFWNITAHCQQKEE------PFLAELTLFAGEKLEQFSFTDEQKTQT 234
Query: 585 AKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYE 644
A + +K VI + R P+ TSTLQQ+AA KL SA TM++AQKLYE
Sbjct: 235 AIETLKKQAQGQLTVIDIVSKERKRNPAAPFTTSTLQQEAARKLRSSAQKTMRVAQKLYE 294
Query: 645 GVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQ 704
AG I+YMRTD +H++ EA + R LI ++YG+ + P P Y K KNAQ
Sbjct: 295 ---------AGYISYMRTDSVHLAQEAIEACRLLIEQQYGAVYVPPTPP-VYTTKSKNAQ 344
Query: 705 EAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES 764
EAHEAIRPTDI AMLS + D +LY LI RT+A QM A + Q VD+ D
Sbjct: 345 EAHEAIRPTDITLEAAMLSAEMGADERQLYDLIRKRTLASQMAAAVMEQTSVDLSAGDTQ 404
Query: 765 IVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVEL 824
+F ++ S ++F GF + Y E+ E E +L + GD + L ++
Sbjct: 405 NIFHATGSIIKFAGFMSVY----------LEDREESAEENMNLLPKMDIGDVIVLTDIIG 454
Query: 825 KQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMV 884
QH T PP R+SE SL+K LEE GIGRPSTYAS + LQ+R YV +R P G++V
Sbjct: 455 SQHFTAPPPRFSEASLIKALEEYGIGRPSTYASIISTLQNREYVESSNRRFVPTTIGKVV 514
Query: 885 SAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV 944
+ FL+++F DY FTAD+E ELD ++ G EWK LL D+W++F + Q+
Sbjct: 515 NDFLTNHFQRYVDYDFTADLEDELDAIARGEQEWKPLLKDFWAQFKA-----------QI 563
Query: 945 EKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
EK E + + + A D P G+ T+ + RFG IG A
Sbjct: 564 EKKSEISREEVMQARELGMD---PKTGK-TVTARFGRFGPFVQIGSKDDAEKPLFASIPE 619
Query: 1005 GDDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
D E+ +L+ + + P+ +G E++++ +G +G YV+ G R VS
Sbjct: 620 DWDFEKISLENALELFKLPRNLG-KTEEDEEIVINNGRFGPYVRFG---------RKFVS 669
Query: 1064 HIKDVDSITL--EDALEL--LRYPVNLGNHPKD---GQPIMLRL-ARAGFSVRHRRTIAS 1115
KD D +T+ E ALEL L+ + H K+ G I+ L R G V + AS
Sbjct: 670 LPKDEDPLTISKERALELIALKKEEDRKKHIKEIKNGDDILQVLNGRFGPYVTNGSINAS 729
Query: 1116 VPKNMKPNDVTLEKALEFLSGKDVRRCGRPK 1146
+PK+++P +TLE AL L R+ R K
Sbjct: 730 IPKHIEPAALTLEDALALLEKAQERKVNRKK 760
>gi|430759742|ref|YP_007215599.1| DNA topoisomerase I [Thioalkalivibrio nitratireducens DSM 14787]
gi|430009366|gb|AGA32118.1| DNA topoisomerase I [Thioalkalivibrio nitratireducens DSM 14787]
Length = 843
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 317/794 (39%), Positives = 449/794 (56%), Gaps = 47/794 (5%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I YLG + VL SYGHVRDL + G+V PD F M +EV
Sbjct: 3 KNLVIVESPAKAKTIGKYLGPDFTVLASYGHVRDLVPKEGAVDPDAGFRMNYEVIERNER 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
++SI AL G++ LILA+DPDREGEAI+WH++E+L+++ L E TV RVVFHEIT+ +
Sbjct: 63 QIQSIARALKGSDALILATDPDREGEAISWHLLEILRERGLLGER-TVKRVVFHEITKKA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A+ R + +L+ A ARRALDYL+GFN+SPLLWRK+ SAGRVQS AL +IC+
Sbjct: 122 IQEAVAHPRGLSLDLINAQQARRALDYLVGFNLSPLLWRKIKRGLSAGRVQSPALRMICE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F+ +EYWT++A + E F A LTH +L+Q + S A +
Sbjct: 182 REDEIERFEAREYWTLDARARRGEQ------PFTARLTHLDGNKLDQFDLNSEPLATEAR 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
Q++ A + +V+ K+ R P+ TSTLQQ+A+ KL F+A+ TM++AQ+LYEG+
Sbjct: 236 QRLLDAAQGSLRVVSVEKKQRKRNPAAPFTTSTLQQEASRKLGFTASRTMRVAQQLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L G A GLITYMRTD + ++ EA EIR LI ERYG+ + P PR+Y K KNAQEA
Sbjct: 296 DLGSG-AIGLITYMRTDSVTLAGEAIAEIRGLIEERYGADNLPA-SPRQYKTKSKNAQEA 353
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT +RRLP + L D +LY LIW RT+ACQM AT + D+ + +
Sbjct: 354 HEAVRPTSVRRLPEEVRQRLTSDQARLYELIWKRTVACQMVHATFDTVAADLAPGETAHR 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ S + GF A Y++ +E + L L G + L +V Q
Sbjct: 414 FRATGSTLRHAGFIAVYQE--------GRDEAAADEDEDRRLPELAEGMVVDLLDVSADQ 465
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RY+E SLVK LEE GIGRPSTYAS + LQ R YV + + P GR+V+A
Sbjct: 466 HFTEPPPRYTEASLVKTLEEYGIGRPSTYASIISTLQSREYVEMDGKRFLPTDIGRIVNA 525
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL+ +F+ DY FTA +E ELD+++ G +W +L +W F +++ + + E
Sbjct: 526 FLTQHFTRYVDYDFTAKLEDELDDIARGDKDWIPVLKGFWKDFRDQVE-DKAVSVSRAEA 584
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ + G P R V ++ R+G IG A L G
Sbjct: 585 VQSRELGTD-----PKSGRPVSV--------RMGRYGPIVQIGTKDDEEKPRFAGLLPGQ 631
Query: 1007 DDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
++ TL+ + + P+ +G P E V + G +G YV+ G K AS+
Sbjct: 632 KMDQVTLEEALALFKLPRELGETPEG-EPVQVNVGRFGPYVKYGR-------KFASLGPD 683
Query: 1066 KDVDSITLEDALELL--RYPVNLGNHPKD--GQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
DV SI L ALE++ + ++ H + Q I + R G + A +PK+ +
Sbjct: 684 DDVWSIELPRALEIVAEKKALDAQKHIQSFPDQGIEVLNGRYGPYITDGTKNAKIPKDRE 743
Query: 1122 PNDVTLEKALEFLS 1135
P +TLE+ E L+
Sbjct: 744 PASLTLEECRELLA 757
>gi|77166457|ref|YP_344982.1| DNA topoisomerase I [Nitrosococcus oceani ATCC 19707]
gi|254435061|ref|ZP_05048568.1| DNA topoisomerase I [Nitrosococcus oceani AFC27]
gi|76884771|gb|ABA59452.1| DNA topoisomerase I [Nitrosococcus oceani ATCC 19707]
gi|207088172|gb|EDZ65444.1| DNA topoisomerase I [Nitrosococcus oceani AFC27]
Length = 783
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 327/822 (39%), Positives = 460/822 (55%), Gaps = 64/822 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K+VVVVES KAK I+ YLG +EVL SYGHVRDL + G+V P+ F M ++
Sbjct: 3 KNVVVVESPAKAKTIKKYLGKNFEVLASYGHVRDLMPKEGAVDPEHGFKMKYQAIEKNGR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I AL A+ L+LA+DPDREGEAI+WH++E+L+++ L E+ + RVVF+EIT +
Sbjct: 63 HVNAIAKALKSADFLLLATDPDREGEAISWHLLELLKEEGVL-EDKAIQRVVFYEITSQA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+ A+ R+I +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC+
Sbjct: 122 VNEAVAHPRDISLDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLICE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EID FK +EYWT+EA D S F A LTH K+L Q I S +A +
Sbjct: 182 REKEIDAFKVREYWTLEA--DAAASKQ----EFVAKLTHLDGKKLAQFDIESKDQALALV 235
Query: 590 QKIN---SANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
++ S +VIK +R R+NP P+ITSTLQQ+A+ KL FS TM +AQ+LYEG
Sbjct: 236 DRLTKAASGELRVIK-VERKQRRRNPAAPFITSTLQQEASRKLGFSTKRTMSVAQQLYEG 294
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
V + DG A GLITYMRTD +++++EA EIR+ I ER+G P + PR + + KNAQE
Sbjct: 295 VDIGDG-AIGLITYMRTDSVNLANEAVGEIRNFITERFGQSGLPAK-PRTFKTRAKNAQE 352
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI------- 758
AHEA+RPT + R+P L L + KLY LIW RT+ACQM+ AT+ + VD+
Sbjct: 353 AHEAVRPTSVYRVPEALKPHLKPEQFKLYQLIWRRTIACQMKHATIDTVAVDLNTQKLAP 412
Query: 759 --GNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDP 816
GN+ +FR++ S V GF A Y++ G K EE + L +K GD
Sbjct: 413 EGGNSASGHIFRATGSTVVDPGFMAVYQE---GRDDIKGEEEQRK------LPPMKEGDR 463
Query: 817 LYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILY 876
+ L ++ +QH T+PP RY+E SLV+ LEE GIGRPSTYA+ + LQ R+Y ++++
Sbjct: 464 VTLLQIRPEQHFTEPPPRYTEASLVRALEEFGIGRPSTYATIISTLQQRDYAVLENKRFQ 523
Query: 877 PEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCA 936
P GR+V+ FL+ +F+ DY FTA +E ELD VS G W +L ++W FS+
Sbjct: 524 PTDVGRVVNRFLTEHFNSYVDYDFTARLEDELDAVSRGEKVWIPVLEEFWGPFSARIQEK 583
Query: 937 QSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ ++ + E + + G P R V ++ R+G IG +
Sbjct: 584 EQ-NVSREEAVQARELGID-----PQSSRPVSV--------RMGRYGPYIQIGSKEDEEK 629
Query: 997 NYIAKTLYGDDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGY 1055
A G + TL+ + + P+ +G P E+V + G +G YV+ Y
Sbjct: 630 PRFAGLQPGQKMDAITLEEALTLFKLPRELGFTPGG-EQVSVNVGRFGPYVKYD---NKY 685
Query: 1056 LPKRASVSHIKDVDSITLEDALELLRYPVN------LGNHPKDGQPIMLRLARAGFSVRH 1109
+ R H +I+LE AL L+ + P G I + R G V
Sbjct: 686 VSLRGEDPH-----TISLERALALIEEKKQADANRVIKVFPDSG--IQVLNGRYGPYVTD 738
Query: 1110 RRTIASVPKNMKPNDVTLEKALEFLSGKDVRRCGRPKGKPKR 1151
A VPK P ++LE+A ++ V+R R G K+
Sbjct: 739 GERNARVPKEQAPEALSLEQAQALINEAPVKRARRKAGTRKK 780
>gi|212213459|ref|YP_002304395.1| DNA topoisomerase I [Coxiella burnetii CbuG_Q212]
gi|212011869|gb|ACJ19250.1| DNA topoisomerase I [Coxiella burnetii CbuG_Q212]
Length = 765
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 294/700 (42%), Positives = 416/700 (59%), Gaps = 46/700 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
KS+VVVES KAK I+ YLG ++V+ SYGHVRDL + G+V P+D F M ++
Sbjct: 3 KSLVVVESPAKAKTIEKYLGKDFKVMASYGHVRDLIPKEGAVDPEDHFKMHYQAIERNIR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I AL NL LA+DPDREGEAIAWH+ +ML+ ++ L + +RVVFH+IT+ +
Sbjct: 63 HMDAIAKALKPCHNLYLATDPDREGEAIAWHVKQMLESRNGLKDK-KFSRVVFHQITKKA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
++ A++ R+I +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +
Sbjct: 122 VQHAIENPRDISMDLVNAQQARRALDYLVGFNLSPLLWKKIRPGLSAGRVQSPALRLIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE+EI+ F+ QEYWT+ A + H+ F A L FQ ++L Q SI + +A +
Sbjct: 182 REIEIENFESQEYWTIHA-----DCHAQQQ-PFDARLIEFQGEKLEQFSIVNEKQAHETR 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
I A V K KR R P+ITST+QQ+AA KL FSA+ TM++AQ+LYEGV
Sbjct: 236 DAITQAANGKLAVAKVVKRERKRNPAPPFITSTMQQEAARKLGFSASKTMQIAQQLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L + A GLITYMRTD + ++ EA +EIR LI E+YG + PE+ R Y K KNAQEA
Sbjct: 296 NLGEEGAMGLITYMRTDSVTLASEALQEIRQLIEEKYGQENVPEQT-RIYKTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT R P L L+ D LKLY+LIW RT+ACQM AT+ + VD+ + +
Sbjct: 355 HEAIRPTSAFRTPENLKKYLNSDQLKLYTLIWKRTIACQMIEATLHTVAVDLKAPN--AI 412
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ S + GF + Y++ K+ EE+D +L L+ G + + E++ +Q
Sbjct: 413 FRANGSTIVKPGFISVYQETFDDK---KKEEESDSK----MLPPLEEGQTVDVNEIKSEQ 465
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RY+E SLVK LEE IGRPSTYAS + L++R YV V ++ GR+V+
Sbjct: 466 HFTEPPPRYTEASLVKALEEYDIGRPSTYASIIATLKNRKYVDVDNKRFIATDVGRIVNR 525
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL+HYF++ DY FTA +E ELD+++ G W +L +WS F + + EK
Sbjct: 526 FLTHYFTKYVDYGFTAKLEDELDDIARGEKTWIPVLETFWSPFKNL--------VDVTEK 577
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
++++ + D CP C L ++ R G FIGC +P C+Y +
Sbjct: 578 TVKRS-----DVTQEKIDEKCPKCS-AQLSIRLGR--RGRFIGCTAYPDCDYTRNLTETE 629
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYV 1046
+ + L+ P + +++K G YG ++
Sbjct: 630 AEAQAVLEGR----------QCPECQSNLIIKMGRYGKFI 659
>gi|344344905|ref|ZP_08775764.1| DNA topoisomerase I [Marichromatium purpuratum 984]
gi|343803599|gb|EGV21506.1| DNA topoisomerase I [Marichromatium purpuratum 984]
Length = 767
Score = 517 bits (1331), Expect = e-143, Method: Compositional matrix adjust.
Identities = 284/651 (43%), Positives = 402/651 (61%), Gaps = 36/651 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG ++V+ SYGHVRDL + G+V P+ F+M ++V H
Sbjct: 2 NLVIVESPAKAKTIKKYLGPDFDVVASYGHVRDLVPKEGAVDPEHGFAMKYQVIERNEKH 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+++I L GAE L LA+DPDREGEAI+WH+ E+L+ + L E V RVVF+EIT+ ++
Sbjct: 62 VQTIAKKLKGAEALYLATDPDREGEAISWHLFELLKGRRQLGER-AVHRVVFNEITKRAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A+ RE+ ++V A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC+R
Sbjct: 121 QEAVANPRELSLDMVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLICER 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+ QEYW++EA DK D F A L + +L Q SI A+ + Q
Sbjct: 181 EAEIERFERQEYWSIEADADK------DAKRFVAKLIQLEGAKLEQFSITDGERAEAVRQ 234
Query: 591 KIN--SANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
++ +A V+++ KR +++P P + TSTLQQ+AA KL F+A TM++AQ+LYEGV
Sbjct: 235 QLEQAAAGTLVVESVKRKQRKRHPAPPFTTSTLQQEAARKLGFTAQRTMRVAQQLYEGVD 294
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ G A GLITYMRTD ++++ EA +EIR + +RYG+ H P + PR + K KNAQEAH
Sbjct: 295 VGAG-AVGLITYMRTDSVNLAQEALEEIRQCVADRYGADHLPPQ-PRFFKTKSKNAQEAH 352
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EA+RPT + R PA L L+++ +LY LIW RT+ACQM A + Q+ VD+ D ++ F
Sbjct: 353 EAVRPTSVLRDPASLKAHLNQEQQRLYELIWKRTLACQMAHALINQVAVDLSAGDGNL-F 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S V GF Y + A ++EE +L ++ GD + L + +QH
Sbjct: 412 RATGSMVAEPGFMRVYLEGRDDAKGGDDDEER-------MLPEMQEGDRVNLLAIRPEQH 464
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RY+E SLVK LEE GIGRPSTYA+ + LQDR YV + + P GR+V+ F
Sbjct: 465 FTEPPPRYTEASLVKALEEFGIGRPSTYATIISTLQDREYVVLDKKRFLPTDVGRVVNRF 524
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L+ YF+ DY FTA +E +LD +S G +W LL +W F Q+ ++ + +
Sbjct: 525 LTEYFTSYVDYDFTARLEDDLDAISRGEVDWIPLLERFWQPFKEQVDHTQA-NVKRSDVT 583
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
E+ D CP CG G L ++ R G FIGC +P C+Y
Sbjct: 584 QERI------------DEVCPKCG-GQLSIRLGR--NGRFIGCTNYPDCDY 619
>gi|117926934|ref|YP_867551.1| DNA topoisomerase I [Magnetococcus marinus MC-1]
gi|117610690|gb|ABK46145.1| DNA topoisomerase I [Magnetococcus marinus MC-1]
Length = 783
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 296/709 (41%), Positives = 426/709 (60%), Gaps = 50/709 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VV+VES KAK I +LG Y+V+ +YGH+RDL +++GSV + F+M + VP +
Sbjct: 3 AVVIVESPAKAKTINKFLGRGYKVVATYGHIRDLPSKNGSVDTEHGFAMKYSVPKDSTKR 62
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ + A+ GAE ++LA+DPDREGEAI+WH+ E+L ++ L EN+ V RVVFHEIT+ +I
Sbjct: 63 VDELAKAVKGAEQVLLATDPDREGEAISWHVYEVLNEKKLL-ENVQVKRVVFHEITKTAI 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A+ AR++D ++V A ARRALDYL+GFN+SPLLWRK+ SAGRVQS AL L+C+R
Sbjct: 122 QDAVAHARDVDMDMVNAQQARRALDYLVGFNLSPLLWRKVRRGLSAGRVQSVALRLVCER 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F+ +EYW++ A+ + + F A L ++L++ SIG AK + +
Sbjct: 182 EAEIQAFEAREYWSITALAAQAAQSAPRPFE--ARLAVADGEKLSKFSIGDEAYAKRLIK 239
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP- 649
+ V + K+ R P+ITSTLQQ+A+ KL FSA TM +AQ+LYEG+++P
Sbjct: 240 AVEKRPLYVSEIEKKQSKRNPAPPFITSTLQQEASRKLGFSAKKTMTVAQRLYEGMEVPT 299
Query: 650 -DG--TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
DG GLI+YMRTD +++++EA + IR I RYG + P+ PRKY KNAQEA
Sbjct: 300 ADGGKETVGLISYMRTDSVNLANEAIESIRKQIEIRYGKEYLPK-SPRKYKSSAKNAQEA 358
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQI----QVDIGNAD 762
HEAIRPTD+ R P ML +L++D +LY LIW RT+ACQM A + ++ VD + +
Sbjct: 359 HEAIRPTDVIRTPEMLREILEKDQFRLYELIWKRTVACQMAQAKIDKVAANLSVDSQDPN 418
Query: 763 ESIVFRSSCSRVEFLGFQAAY----EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLY 818
+ FR++ S V F GF Y ++V A ++ E+D + +IL L+ G L
Sbjct: 419 AAYRFRATGSSVAFAGFMKVYMEGKDEVSA------QDREDDDDDNESILPPLEVGQQLE 472
Query: 819 LGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPE 878
++ +QH T+PP RY+E +LVK LE GIGRPSTYA T+ LQDR YV + +R YPE
Sbjct: 473 QKSLDARQHFTEPPPRYTEATLVKVLESYGIGRPSTYAPTMSTLQDRGYVKLDARKFYPE 532
Query: 879 FRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQS 938
G +V+++L+ +FS DY+FTA++E +LD VS G W L+ D+W F
Sbjct: 533 DVGMVVNSYLTKHFSTYVDYNFTANLEDQLDAVSRGEKSWVPLMEDFWQPF--------- 583
Query: 939 LHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
I Q+ E T + + + D CP CG L K+ RFG F C +P C +
Sbjct: 584 --IQQITLKDETTSKEEV--TTEQIDEPCPKCG-APLSIKLGRFGK--FKACTGYPECKH 636
Query: 999 IAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASK--EKVLLKSGPYGFY 1045
++E+ + R EP+L P K + +L+K G YG Y
Sbjct: 637 TEPL-----NKEEEVSR----PEPELT-DIPCDKCGKPMLIKEGRYGKY 675
>gi|165918186|ref|ZP_02218272.1| DNA topoisomerase I [Coxiella burnetii Q321]
gi|165918046|gb|EDR36650.1| DNA topoisomerase I [Coxiella burnetii Q321]
Length = 765
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 288/652 (44%), Positives = 400/652 (61%), Gaps = 36/652 (5%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
KS+VVVES KAK I+ YLG ++V+ SYGHVRDL + G+V P+D F M ++
Sbjct: 3 KSLVVVESPAKAKTIEKYLGKDFKVMASYGHVRDLIPKEGAVDPEDHFKMHYQAIERNIR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I AL NL LA+DPDREGEAIAWH+ +ML+ ++ L + +RVVFH+IT+ +
Sbjct: 63 HMDAIAKALKPCHNLYLATDPDREGEAIAWHVKQMLESRNGLKDK-KFSRVVFHQITKKA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
++ A++ R+I +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +
Sbjct: 122 VQHAIENPRDISMDLVNAQQARRALDYLVGFNLSPLLWKKIRPGLSAGRVQSPALRLIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE+EI+ F+ QEYWT+ A + H+ F A L FQ ++L Q SI + +A +
Sbjct: 182 REIEIENFESQEYWTIHA-----DCHAQQQ-PFDARLIEFQGEKLEQFSIVNEKQAHETR 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
I A V K KR R P+ITST+QQ+AA KL FSA+ TM++AQ+LYEGV
Sbjct: 236 DAITQAANGKLTVAKVVKRERKRNPAPPFITSTMQQEAARKLGFSASKTMQIAQQLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L + A GLITYMRTD + ++ EA +EIR LI E+YG + PE+ R Y K KNAQEA
Sbjct: 296 NLGEEGAMGLITYMRTDSVTLASEALQEIRQLIEEKYGQENVPEQT-RIYKTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT R P L L+ D LKLY+LIW RT+ACQM AT+ + VD+ + +
Sbjct: 355 HEAIRPTSAFRTPENLKKYLNSDQLKLYTLIWKRTIACQMIEATLHTVAVDLKAPN--AI 412
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ S + GF + Y++ K+ EE+D +L L+ G + + E++ +Q
Sbjct: 413 FRANGSTIVKPGFISVYQETFDDK---KKEEESDSK----MLPPLEEGQTVDVNEIKSEQ 465
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RY+E SLVK LEE IGRPSTYAS + L++R YV V ++ GR+V+
Sbjct: 466 HFTEPPPRYTEASLVKALEEYDIGRPSTYASIIATLKNRKYVDVDNKRFIATDVGRIVNR 525
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL+HYF++ DY FTA +E ELD+++ G W +L +WS F + + EK
Sbjct: 526 FLTHYFTKYVDYGFTAKLEDELDDIARGEKTWIPVLETFWSPFKNL--------VDVTEK 577
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
++++ + D CP C L ++ R G FIGC +P C+Y
Sbjct: 578 TVKRS-----DVTQEKIDEKCPKCS-AQLSIRLGR--RGRFIGCTAYPDCDY 621
>gi|153206875|ref|ZP_01945693.1| DNA topoisomerase I [Coxiella burnetii 'MSU Goat Q177']
gi|154707151|ref|YP_001425405.1| DNA topoisomerase I [Coxiella burnetii Dugway 5J108-111]
gi|212219507|ref|YP_002306294.1| DNA topoisomerase I [Coxiella burnetii CbuK_Q154]
gi|120576948|gb|EAX33572.1| DNA topoisomerase I [Coxiella burnetii 'MSU Goat Q177']
gi|154356437|gb|ABS77899.1| DNA topoisomerase I [Coxiella burnetii Dugway 5J108-111]
gi|212013769|gb|ACJ21149.1| DNA topoisomerase I [Coxiella burnetii CbuK_Q154]
Length = 765
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 294/700 (42%), Positives = 415/700 (59%), Gaps = 46/700 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
KS+VVVES KAK I+ YLG ++V+ SYGHVRDL + G+V P+D F M ++
Sbjct: 3 KSLVVVESPAKAKTIEKYLGKDFKVMASYGHVRDLIPKEGAVDPEDHFKMHYQAIERNIR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I AL NL LA+DPDREGEAIAWH+ +ML+ ++ L + +RVVFH+IT+ +
Sbjct: 63 HMDAIAKALKPCHNLYLATDPDREGEAIAWHVKQMLESRNGLKDK-KFSRVVFHQITKKA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
++ A++ R+I +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +
Sbjct: 122 VQHAIENPRDISMDLVNAQQARRALDYLVGFNLSPLLWKKIRPGLSAGRVQSPALRLIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE+EI+ F+ QEYWT+ A + H+ F A L FQ ++L Q SI + +A +
Sbjct: 182 REIEIENFESQEYWTIHA-----DCHAQQQ-PFDARLIEFQGEKLEQFSIVNEKQAHETR 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
I A V K KR R P+ITST+QQ+AA KL FSA+ TM++AQ+LYEGV
Sbjct: 236 DAITQAANGKLTVAKVVKRERKRNPAPPFITSTMQQEAARKLGFSASKTMQIAQQLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L + A GLITYMRTD + ++ EA +EIR LI E+YG + PE+ R Y K KNAQEA
Sbjct: 296 NLGEEGAMGLITYMRTDSVTLASEALQEIRQLIEEKYGQENVPEQT-RIYKTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT R P L L+ D LKLY+LIW RT+ACQM AT+ + VD+ + +
Sbjct: 355 HEAIRPTSAFRTPENLKKYLNSDQLKLYTLIWKRTIACQMIEATLHTVAVDLKAPN--AI 412
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ S + GF + Y++ K+ EE+D +L L+ G + + E++ +Q
Sbjct: 413 FRANGSTIVKPGFISVYQETFDDK---KKEEESDSK----MLPPLEEGQTVDVNEIKSEQ 465
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RY+E SLVK LEE IGRPSTYAS + L++R YV V ++ GR+V+
Sbjct: 466 HFTEPPPRYTEASLVKALEEYDIGRPSTYASIIATLKNRKYVDVDNKRFIATDVGRIVNR 525
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL+HYF++ DY FTA +E ELD+++ G W +L +WS F + + EK
Sbjct: 526 FLTHYFTKYVDYGFTAKLEDELDDIARGEKTWIPVLETFWSPFKNL--------VDVTEK 577
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
++++ + D CP C L ++ R G FIGC +P C+Y
Sbjct: 578 TVKRS-----DVTQEKIDEKCPKCS-AQLSIRLGR--RGRFIGCTAYPDCDYTRNLTETA 629
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYV 1046
+ + L+ P + +++K G YG ++
Sbjct: 630 AEAQAVLEGR----------QCPECQSNLIIKMGRYGKFI 659
>gi|255020218|ref|ZP_05292287.1| DNA topoisomerase I [Acidithiobacillus caldus ATCC 51756]
gi|254970360|gb|EET27853.1| DNA topoisomerase I [Acidithiobacillus caldus ATCC 51756]
Length = 827
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 298/702 (42%), Positives = 413/702 (58%), Gaps = 52/702 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +VVVES KAK I+ YLG + VL SYGHVRDL + G+V + F+M +
Sbjct: 2 GQQLVVVESPAKAKTIEKYLGKDFTVLASYGHVRDLLPKEGAVDTEHGFAMRYAEIERNR 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AL A+ L LA+DPDREGEAI+WH+VE+L+++ L E+ V RVVFHEIT+
Sbjct: 62 RHVDAIAKALRSADALWLATDPDREGEAISWHLVELLREK-GLLEDRAVHRVVFHEITQK 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+++ A+ REI +LV A ARRALDYL+GFN+SPLLWRK+ SAGRVQSAAL L+C
Sbjct: 121 AVREAIAHPREIAGDLVNAQQARRALDYLVGFNLSPLLWRKVRPGLSAGRVQSAALRLVC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI+ F QEYWT+ A L + E F A LTH+Q ++L Q I A++I
Sbjct: 181 EREDEIEAFVRQEYWTIGAQLRRGED------PFTARLTHWQQQKLEQFDIVDGERAEEI 234
Query: 589 EQ----KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYE 644
Q I + +V K +++ R+ P+ TSTLQQ+A+ KL FSA+ TM++AQ+LYE
Sbjct: 235 RQAILADIAAHGLRVRKVERKNRQRQPAAPFTTSTLQQEASRKLGFSASRTMRVAQQLYE 294
Query: 645 GVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQ 704
GV + T GLITYMRTD +++++EA +RS I YG+ P E R+Y K KNAQ
Sbjct: 295 GVSIGTET-VGLITYMRTDAVNLAEEALTSLRSFIVGHYGADFLPAEA-RRYQTKSKNAQ 352
Query: 705 EAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES 764
EAHEAIRPTD++R P L G+L+ D +LY LIW R +ACQM A + + D+ +AD
Sbjct: 353 EAHEAIRPTDVQRTPEKLRGVLERDLWRLYDLIWKRAVACQMAAARLDLVAADL-DADSH 411
Query: 765 IVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVEL 824
R++ S V F GF A Y + +E + +L L+ G+ + + V
Sbjct: 412 WTLRANGSTVTFPGFMAVY---------LEGRDEAAEEDEERLLPPLREGESVAVDAVLG 462
Query: 825 KQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMV 884
+QH T+PP RYS+ +LVK LE GIGRPSTYAS ++ LQ+R YV V+ R +P GR+V
Sbjct: 463 EQHFTEPPPRYSDATLVKTLEAHGIGRPSTYASIIQTLQNREYVEVQQRRFFPTDLGRVV 522
Query: 885 SAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV 944
FL +F DY FTA ME ELD ++ G +W+ +L +W F
Sbjct: 523 GRFLIQHFERYVDYGFTAGMEDELDAIARGEKQWQPVLAQFWGPFH-------------- 568
Query: 945 EKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
E + EK A+ D CP CG+ L+ K+ R G FI C+ P C+Y A+ L
Sbjct: 569 ELLEEKANVSRQEATSEALDEDCPECGK-KLLVKLGRHGR--FIACSGFPECHY-ARPLE 624
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYV 1046
G D + + R+ P + ++ K+G YG ++
Sbjct: 625 GPRDAPEPVGRDC-----------PDCGQPLVYKTGRYGRFI 655
>gi|29655283|ref|NP_820975.1| DNA topoisomerase I [Coxiella burnetii RSA 493]
gi|29542555|gb|AAO91489.1| DNA topoisomerase I [Coxiella burnetii RSA 493]
Length = 765
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 288/652 (44%), Positives = 400/652 (61%), Gaps = 36/652 (5%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
KS+VVVES KAK I+ YLG ++V+ SYGHVRDL + G+V P+D F M ++
Sbjct: 3 KSLVVVESPAKAKTIEKYLGKDFKVMASYGHVRDLIPKEGAVDPEDHFKMHYQAIERNIR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I AL NL LA+DPDREGEAIAWH+ +ML+ ++ L + +RVVFH+IT+ +
Sbjct: 63 HMDAIAKALKPCHNLYLATDPDREGEAIAWHVKQMLESRNGLKDK-KFSRVVFHQITKKA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
++ A++ R+I +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +
Sbjct: 122 VQHAIENPRDISMDLVNAQQARRALDYLVGFNLSPLLWKKIRPGLSAGRVQSPALRLIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE+EI+ F+ QEYWT+ A + H+ F A L FQ ++L Q SI + +A +
Sbjct: 182 REIEIENFESQEYWTIHA-----DCHAQQQ-PFDARLIEFQGEKLEQFSIVNEKQAHETR 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
I A V K KR R P+ITST+QQ+AA KL FSA+ TM++AQ+LYEGV
Sbjct: 236 DAITQAANGKLTVAKVVKRERKRNPAPPFITSTMQQEAARKLGFSASKTMQIAQQLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L + A GLITYMRTD + ++ EA +EIR LI E+YG + PE+ R Y K KNAQEA
Sbjct: 296 NLGEEGAMGLITYMRTDSVTLASEALQEIRQLIEEKYGQENVPEQT-RIYKTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT R P L L+ D LKLY+LIW RT+ACQM AT+ + VD+ + +
Sbjct: 355 HEAIRPTSAFRTPENLKKYLNSDQLKLYTLIWKRTIACQMIEATLHTVAVDLKAPN--AI 412
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ S + GF + Y++ K+ EE+D +L L+ G + + E++ +Q
Sbjct: 413 FRANGSTIVKPGFISVYQETFDDK---KKEEESDSK----MLPPLEEGQTVDVNEIKSEQ 465
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RY+E SLVK LEE IGRPSTYAS + L++R YV V ++ GR+V+
Sbjct: 466 HFTEPPPRYTEASLVKALEEYDIGRPSTYASIIATLKNRKYVDVDNKRFIATDVGRIVNR 525
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL+HYF++ DY FTA +E ELD+++ G W +L +WS F + + EK
Sbjct: 526 FLTHYFTKYVDYGFTAKLEDELDDIARGEKTWIPVLETFWSPFKNL--------VDVTEK 577
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
++++ + D CP C L ++ R G FIGC +P C+Y
Sbjct: 578 TVKRS-----DVTQEKIDEKCPKCS-AQLSIRLGR--RGRFIGCTAYPDCDY 621
>gi|254447634|ref|ZP_05061100.1| DNA topoisomerase I [gamma proteobacterium HTCC5015]
gi|198262977|gb|EDY87256.1| DNA topoisomerase I [gamma proteobacterium HTCC5015]
Length = 765
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 296/703 (42%), Positives = 422/703 (60%), Gaps = 48/703 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES K+K I+ YLG YEV+ SYGHVRDL + G+V P++DF+MV+E
Sbjct: 3 KNLVIVESPAKSKTIKKYLGKDYEVMASYGHVRDLKPKEGAVDPNNDFAMVYEPIERNGK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ IK A+ A+ L LA+DPDREGEAI+WH+ E+L+ L + V R+VF+EIT+ +
Sbjct: 63 HVSEIKKAMKKADALYLATDPDREGEAISWHLKELLEDAGILKDK-EVHRIVFNEITKRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
++ A+ R + +L+ A ARRALDYL+GFN+SPLLWRK+ SAGRVQS AL LI +
Sbjct: 122 VQEAVANPRTLSTDLIDAQQARRALDYLVGFNLSPLLWRKIRRGLSAGRVQSPALRLIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE +I++FKP+EYWTVEA L K + +F A L+ +++ Q +I + AK ++
Sbjct: 182 REQQIEQFKPREYWTVEADLKKAKQ------AFVAKLSVLSGEKVKQFTIETEKHAKQVQ 235
Query: 590 QKINSANFQVIKNSK--RSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
++ A +K +K R R+NP P + TSTLQQ+A KL FS++ TM +AQKLYEG+
Sbjct: 236 SDLSEAADGRLKVAKVDRKQRRRNPAPPFTTSTLQQEAVRKLGFSSSRTMTVAQKLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
DG GLITYMRTD + ++ EA EIR LI +RYG P++ PR + K KNAQEA
Sbjct: 296 DTGDG-PVGLITYMRTDSVSLAQEALDEIRDLIADRYGKDFVPDK-PRSFKTKSKNAQEA 353
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT + R P + LD D +LYSLIW RT+ACQM AT+ + D+ A
Sbjct: 354 HEAIRPTSVLRHPDEIKNKLDRDQYRLYSLIWKRTVACQMIHATMNTVAADLATAKGGHQ 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ S ++ GF Y++ K++ + D E +L +L+ G + L V Q
Sbjct: 414 FRATGSTIQHPGFMEVYQEG-------KDDSKADEDEK--MLPTLEEGQLIDLDAVRTDQ 464
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RY+E SLVK LEE GIGRPSTYAS + L +R YV ++ + P G +V+
Sbjct: 465 HFTEPPPRYTEASLVKTLEEFGIGRPSTYASIISTLINREYVVLEKKRFQPTDVGEVVNR 524
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL+ +F++ DY FTA++E ELD V+ G +W LL +W+ F I +V+
Sbjct: 525 FLTQHFTQYVDYDFTANLEDELDEVARGERQWIPLLKTFWNPF-----------IERVQ- 572
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
E S S + + CP C + L K+ R +G FIGC+ +P C+Y + + D
Sbjct: 573 TTESGVSRSDVTSQ-DIEEKCPKC-QSHLQIKLGR--SGKFIGCSAYPDCDY-TRNVDED 627
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG 1049
D E D ++ D P G ++++K YG ++ G
Sbjct: 628 DSEPDVIE---GRDCPDCGG-------QLVVKRSRYGKFIGCG 660
>gi|388455540|ref|ZP_10137835.1| DNA topoisomerase I [Fluoribacter dumoffii Tex-KL]
Length = 761
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 295/704 (41%), Positives = 426/704 (60%), Gaps = 53/704 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK IQ YLG+ YEV+ SYGHVRDL AR GSV PD F+M +
Sbjct: 3 KHLVIVESPAKAKTIQKYLGNDYEVVASYGHVRDLPARKGSVNPDKHFAMTYVPIEKNSR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I L +++L+LA+DPDREGEAI+WHI E++++++ L ++ + R+ F+EIT+++
Sbjct: 63 HIETIAKMLKKSDSLLLATDPDREGEAISWHIYELMKEKN-LTKDKPIHRIFFNEITKSA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A+ R I +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +
Sbjct: 122 IQDAINNPRSISMDLVNAQQARRALDYLVGFNLSPLLWKKVRRGLSAGRVQSPALRLIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDT-FSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
RE EI+ F PQEYW + A L T SF A LTHF++++L+Q ++ +A+ I
Sbjct: 182 REEEIERFIPQEYWKILA-------QCLHTNVSFEARLTHFKNEKLHQFTVTRDEQAQQI 234
Query: 589 EQKI---NSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
++ + N V + K+ RK P+ITSTLQQ+AA KL F+A +M +AQ+LYEG
Sbjct: 235 KEHLLREAQGNLIVTQIEKKQRKRKPSPPFITSTLQQEAARKLGFTARKSMMVAQQLYEG 294
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
+ + GT GLITYMRTD +++S EA +E R I ERYG+ + P PR Y K KNAQE
Sbjct: 295 IDIGTGTV-GLITYMRTDSVNLSAEAIEETRQFITERYGADNCPA-SPRVYKTKSKNAQE 352
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEAIRPT I+R P ML L D KLYSLIW RT+ACQM+ A + + VD+ + E
Sbjct: 353 AHEAIRPTSIKRTPEMLQSALTADQYKLYSLIWKRTVACQMEDAVLDTVAVDL-SCGEGN 411
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
+FR++ S + F GF + YE+ ++ D ++L + G+ + + ++
Sbjct: 412 IFRANGSTITFPGFLSVYEE--------GRDDTKDEEGEGSLLPQMTVGEKVKVQDILAN 463
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PP RYSE +LVK LEE IGRPSTYAS + LQ R YV V + +P GR+V+
Sbjct: 464 QHFTEPPPRYSEATLVKALEEYDIGRPSTYASIIHTLQQREYVIVDKKRFFPTDVGRIVN 523
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
FL+ YF+ DY FTA +E LD ++ G EW +L ++W F + Q++
Sbjct: 524 RFLTGYFTRYVDYKFTAQLEDTLDAIARGEKEWVPVLEEFWQPF-----------VQQIQ 572
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAKTLY 1004
++ + + + D+ CP CG+ I R G G FIGC +P C+Y + +
Sbjct: 573 TTDQQVQRKDVTSEV--LDQQCPKCGKPLSI----RLGKRGRFIGCTGYPECDY-TQDIA 625
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
G ++E+ +EP+++ P + +K+G YG ++
Sbjct: 626 GQENEK---------NEPEVVEGRVCPECASPLHIKNGRYGRFI 660
>gi|254491044|ref|ZP_05104225.1| DNA topoisomerase I [Methylophaga thiooxidans DMS010]
gi|224463557|gb|EEF79825.1| DNA topoisomerase I [Methylophaga thiooxydans DMS010]
Length = 774
Score = 514 bits (1324), Expect = e-142, Method: Compositional matrix adjust.
Identities = 298/708 (42%), Positives = 421/708 (59%), Gaps = 59/708 (8%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
GK +V+VES KAK I+ YLG EVL SYGHVRDL + G+V P ++F+M ++V
Sbjct: 15 GKKLVIVESPAKAKTIKKYLGKDVEVLASYGHVRDLLPKEGAVDPANEFAMKYQVIDRNS 74
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A+ A+ L LA+DPDREGEAI+WH++E+L+++ AL +N RVVFHEIT+
Sbjct: 75 KHVDAIVKAMKKADELYLATDPDREGEAISWHLLELLKKRGAL-KNKETHRVVFHEITKQ 133
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ R + ++V A ARRALDYL+GF +SPLLW+K+ SAGRVQS AL +I
Sbjct: 134 AVNDAVAHPRGLSMDMVNAQQARRALDYLVGFTLSPLLWKKVRRGLSAGRVQSPALRMIV 193
Query: 529 DREMEIDEFKPQEYWTVEA--VLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAK 586
+RE+EI+ FKP+EYWT+EA V KK+ F A LTHF+ ++L+Q ++ + ++
Sbjct: 194 ERELEIEAFKPKEYWTIEADAVAQKKD--------FQAKLTHFEGEKLSQFTVNNGEQSA 245
Query: 587 DIEQKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLY 643
D+ K+ SA V K K+ R P+ TSTLQQ+A+ KL F A TM +AQ+LY
Sbjct: 246 DVVAKLTSAAEGKLLVTKVDKKQRKRNPAAPFTTSTLQQEASRKLGFGAQRTMSVAQQLY 305
Query: 644 EGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA 703
EGV +G A GLITYMRTD + ++ EA +EIR I E+YG P + P++Y K KNA
Sbjct: 306 EGVDTGEG-AVGLITYMRTDSVSLAAEAIEEIRGFIAEKYGQKMVPGK-PQEYKTKSKNA 363
Query: 704 QEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADE 763
QEAHEAIRPT + R P + L D LKLY+LIW RTM+CQM AT+ + VD+G +
Sbjct: 364 QEAHEAIRPTSVLRTPEEMKAYLSVDQLKLYTLIWQRTMSCQMVHATLNTVAVDLG-CGQ 422
Query: 764 SIVFRSSCSRVEFLGFQAAYEDV--DAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGE 821
FR++ S V GF + Y + D G EN +L ++ G+ + L
Sbjct: 423 GNTFRANGSTVVNPGFMSVYLEGKDDTGKTDKDEN----------LLPPMEVGEVVELKA 472
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRG 881
+ +QH T+PP R+SE SLV+ LEE IGRPSTYAS + L R YV + ++ +P G
Sbjct: 473 IRPEQHFTEPPPRFSEASLVRSLEEHDIGRPSTYASIISTLLQREYVELVTKRFHPTDVG 532
Query: 882 RMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI 941
R+V FL +F++ DY+FTA +E ELD V+ G EW LL +W+ F
Sbjct: 533 RVVGKFLVDHFTKYVDYNFTAQLEDELDAVARGEEEWIPLLTRFWAPFK----------- 581
Query: 942 HQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFG-AGYFIGCNQHPRCNYIA 1000
QVE ++ + L ++D CP CG SR G +G FIGC +P C+Y
Sbjct: 582 EQVETKDKEVQRSDVTQELLDED--CPKCGNKL----SSRLGRSGRFIGCTAYPECDYTR 635
Query: 1001 KTLYGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
D EE T+ +EP+++ P + + +++G YG ++
Sbjct: 636 NI----DGEE------TSNNEPEVVEGRKCPKCESDLWIRTGRYGKFI 673
>gi|74316028|ref|YP_313768.1| DNA topoisomerase I [Thiobacillus denitrificans ATCC 25259]
gi|74055523|gb|AAZ95963.1| DNA topoisomerase I [Thiobacillus denitrificans ATCC 25259]
Length = 857
Score = 514 bits (1323), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/787 (38%), Positives = 449/787 (57%), Gaps = 63/787 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES +K+K ++ YLG Y++L SYGHVRDL R+G+V ++FSM +++ H+
Sbjct: 4 LVIVESPSKSKSLKKYLGADYDILASYGHVRDLEPRTGAVD-TENFSMKYQIIERNAKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A A+ ++LA+DPDREGEAI+WHI E+L+++ + RV F+EITE++I+
Sbjct: 63 DAIVKAAKKADEVLLATDPDREGEAISWHISEILKEKKV---KTPMKRVAFYEITESAIQ 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ REI ++LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL +I +RE
Sbjct: 120 DAVRNPREIASDLVDAQQARRALDYLVGFNLSPLLWKKISPGLSAGRVQSPALRMIVERE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F +EYWT+ +SH + +F A LTHF+ ++L+Q ++ +K+
Sbjct: 180 EEIEAFVAREYWTLHL-----DSHK-GSQAFTAKLTHFKGEKLDQFAVEHEARSKEWLAT 233
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S + +V++ K+ R P+ TSTLQQ +L + M+ AQ+LYEG+ L +G
Sbjct: 234 LESKDARVMRIEKKRRARNPAAPFTTSTLQQAGVRQLGMTTDRVMRTAQQLYEGIDLGEG 293
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD ++++ EA +IR + + + P +Y K KNAQEAHEA+R
Sbjct: 294 -PVGLITYMRTDSVNLAQEAITDIRKYVGANFDKDYLPPHA-VQYKAKTKNAQEAHEAVR 351
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R P + L +D +LY L+W RT+ACQM A + DI + + FR++
Sbjct: 352 PTSVLRTPDAVRQFLTQDQARLYELVWKRTVACQMTAAQFDTVAADITVGEGT--FRATG 409
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
+ F GF A Y+D +E+D E+ L +L G+ L + + +QH TQP
Sbjct: 410 QTLAFAGFLAVYQD-----------DEDDEGES--KLPALVEGETLPVDRLYGEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E SLVK LEE GIGRPSTYAS + LQDR YV ++ + P GR+V+ FL+ +
Sbjct: 457 PPRYTEASLVKALEEYGIGRPSTYASIISTLQDREYVVLEKKRFQPTDVGRLVNCFLTRH 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
FS DY FTA +E +LD+VS G W LL ++WS F Q + + +LE
Sbjct: 517 FSHYVDYDFTAKLEDKLDDVSNGKRVWSRLLGEFWSGFEGDLKAKQD--VERGCPILE-- 572
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEED 1011
+CP C + + R G FIGC+ +P C+Y + L+ E D
Sbjct: 573 --------------ACPKCAKPLFMQASKR---GLFIGCSGYPECDY-TRPLHPATAEGD 614
Query: 1012 TLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLG---EDRTGYLPKRASVSHIKDV 1068
++G PAS V L SG +G YVQ+G ED+ P+RAS +
Sbjct: 615 N-----------ILGKDPASGLDVKLLSGRFGPYVQIGDMPEDKKAPKPRRASWPKDIPL 663
Query: 1069 DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
++ TL+ AL+ L P +G+HP G PI+ R G + H S+PK ++ L
Sbjct: 664 ENATLDLALKFLSLPREVGHHPTTGLPIVANNGRFGPYLLHDGKFKSIPKTDSVYEIDLP 723
Query: 1129 KALEFLS 1135
+ALE L+
Sbjct: 724 RALEVLA 730
>gi|340780754|ref|YP_004747361.1| DNA topoisomerase I [Acidithiobacillus caldus SM-1]
gi|340554907|gb|AEK56661.1| DNA topoisomerase I [Acidithiobacillus caldus SM-1]
Length = 827
Score = 513 bits (1322), Expect = e-142, Method: Compositional matrix adjust.
Identities = 297/702 (42%), Positives = 411/702 (58%), Gaps = 52/702 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +VVVES KAK I+ YLG + VL SYGHVRDL + G+V + F+M +
Sbjct: 2 GQQLVVVESPAKAKTIEKYLGKDFTVLASYGHVRDLLPKEGAVDTEHGFAMRYAEIERNR 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AL A+ L LA+DPDREGEAI+WH+VE+L+++ L + V RVVFHEIT+
Sbjct: 62 RHVDAIAKALRSADALWLATDPDREGEAISWHLVELLREKGLLKDR-AVHRVVFHEITQK 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+++ A+ REI +LV A ARRALDYL+GFN+SPLLWRK+ SAGRVQSAAL L+C
Sbjct: 121 AVREAIAHPREIAGDLVNAQQARRALDYLVGFNLSPLLWRKVRPGLSAGRVQSAALRLVC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI+ F QEYWT+ A L + E F A LTH+Q ++L Q I A++I
Sbjct: 181 EREDEIEAFVRQEYWTIGAHLRRGED------PFTARLTHWQQQKLEQFDIVDGERAEEI 234
Query: 589 EQ----KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYE 644
Q I + +V K +++ R+ P+ TSTLQQ+A+ KL FSA+ TM++AQ+LYE
Sbjct: 235 RQAILADIAAGGLRVRKVERKNRQRQPAAPFTTSTLQQEASRKLGFSASRTMRVAQQLYE 294
Query: 645 GVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQ 704
GV + T GLITYMRTD +++++EA +RS I YG+ P E R+Y K KNAQ
Sbjct: 295 GVSIGTET-VGLITYMRTDAVNLAEEALTSLRSFILGHYGADFLPAEA-RRYQTKSKNAQ 352
Query: 705 EAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES 764
EAHEAIRPTD++R P L G+L+ D +LY LIW R +ACQM A + + D+ +AD
Sbjct: 353 EAHEAIRPTDVQRTPEKLRGVLERDLWRLYDLIWKRAVACQMAAARLDLVAADL-DADSH 411
Query: 765 IVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVEL 824
R++ S V F GF A Y + +E + +L L+ G+ + + V
Sbjct: 412 WTLRANGSTVTFPGFMAVY---------LEGRDEAAEEDEERLLPPLREGESVAVDAVLG 462
Query: 825 KQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMV 884
+QH T+PP RYS+ +LVK LE GIGRPSTYAS ++ LQ+R YV V+ R P GR+V
Sbjct: 463 EQHFTEPPPRYSDATLVKTLEAHGIGRPSTYASIIQTLQNREYVEVQQRRFVPTDLGRVV 522
Query: 885 SAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV 944
FL +F DY FTA ME ELD ++ G +W+ +L +W F
Sbjct: 523 GRFLIQHFERYVDYGFTAAMEDELDAIARGEKQWQPVLAQFWGPFH-------------- 568
Query: 945 EKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
E + EK A+ D CP CG+ L+ K+ R G FI C+ P C+Y A+ L
Sbjct: 569 ELLEEKANVSRQEATSEALDEDCPECGK-KLLVKLGRHGR--FIACSGFPECHY-ARPLD 624
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYV 1046
G D + + R+ P + ++ K+G YG ++
Sbjct: 625 GPRDAPEPVGRDC-----------PDCGQPLVYKTGRYGRFI 655
>gi|153869945|ref|ZP_01999448.1| DNA topoisomerase I [Beggiatoa sp. PS]
gi|152073587|gb|EDN70550.1| DNA topoisomerase I [Beggiatoa sp. PS]
Length = 783
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 304/718 (42%), Positives = 418/718 (58%), Gaps = 63/718 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I+ YLG +EVL SYGHVRDL ++G+V ++DF M +++
Sbjct: 3 KNLVIVESPAKAKTIKKYLGKDFEVLASYGHVRDLLPKAGAVDTNNDFVMHYQLIERNAK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I A+ GA+ L LA+DPDREGEAI+WH+ E+L+ + L +N V RV FHEIT+ +
Sbjct: 63 HVTAISKAMKGADTLYLATDPDREGEAISWHLQEILKDKRLL-DNKPVYRVAFHEITQHA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A+ RE+ +L+ A ARRALDYL+GFN+SPLLWRK+ SAGRVQS AL LI +
Sbjct: 122 IQEAIANPRELSMDLINAQQARRALDYLVGFNLSPLLWRKVSKGLSAGRVQSPALRLIAE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FK EYWT+EA +KES +F A L F++K+L QL T+ KD +
Sbjct: 182 REQEIENFKSTEYWTIEAQC-QKESQ-----NFTAKLNLFENKKLKQLP----TDIKDEK 231
Query: 590 QKINSAN------------------FQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFS 631
+IN +N QV K K+ RK +P+ TST+QQ+AA KL F+
Sbjct: 232 NEINVSNTEQANHIRSTLLNLAQGQLQVTKVEKKQRKRKPASPFTTSTIQQEAARKLGFT 291
Query: 632 ATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEE 691
A TM++AQ+LYEG+ +G A GLITYMRTD L+++ EA EIR I E YG + P +
Sbjct: 292 AKRTMQIAQQLYEGIDTGNG-AVGLITYMRTDSLNLAGEAVTEIREAISELYGKDNLPAK 350
Query: 692 GPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATV 751
PR+Y K KNAQEAHEAIRPT + P L+ L+++ LKLY LIW RT+ACQM A +
Sbjct: 351 -PREYKTKAKNAQEAHEAIRPTSAKCYPKDLTNALNKEQLKLYELIWKRTIACQMIDAKL 409
Query: 752 GQIQVDIGNADESIVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNS 810
+ VD+ E FR++ S + GF Y E VD + ND + +L
Sbjct: 410 NTVAVDLA-CSEGNNFRANGSTIAHPGFMIVYQESVD------DKKPGNDDEKMLPVLIE 462
Query: 811 LKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTV 870
+ L L ++ QH T+PP R+SE SLVK LEE GIGRPSTYAS + LQ R YV +
Sbjct: 463 ---KEWLKLEDIAADQHFTEPPPRFSEASLVKSLEEFGIGRPSTYASIISTLQQREYVKL 519
Query: 871 KSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFS 930
+ + P GR+V+ L+ +FS DY FTA +E +LD VS G EW L+ +WS+F
Sbjct: 520 EKKRFIPTDIGRVVNKLLTEHFSRYVDYDFTAKLEDQLDEVSRGEQEWIPLMHRFWSQFK 579
Query: 931 SYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGC 990
+ + + Q + + ++T D CP CG LI ++S+ G FIGC
Sbjct: 580 TLVD--EKMQTVQKKDIAQETL-----------DEKCPQCG-SQLIIRLSK--RGRFIGC 623
Query: 991 NQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
+ P C Y ++ E L N P++I P + K GPY ++
Sbjct: 624 SAFPNCKYTRNLANDNEAGEGALPVNA---APEVIEGRTCPKCGSPLHQKQGPYSKFI 678
>gi|386829425|ref|ZP_10116532.1| DNA topoisomerase I, bacterial [Beggiatoa alba B18LD]
gi|386430309|gb|EIJ44137.1| DNA topoisomerase I, bacterial [Beggiatoa alba B18LD]
Length = 771
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 281/663 (42%), Positives = 410/663 (61%), Gaps = 40/663 (6%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES KAK I+ YLG + V SYGHVRDL +SG+V PD+ F+M +++
Sbjct: 2 AKNLVIVESPAKAKTIEKYLGKDFTVTASYGHVRDLLPKSGAVDPDNAFAMNYQLIEKNS 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+++IK A+ A+ L LA+DPDREGEAI+WH+ E+L++ + + + V RV F+EIT+
Sbjct: 62 KHVETIKKAIKQADTLYLATDPDREGEAISWHLYEILKENNLIGKK-PVHRVAFYEITQQ 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+++ A+ R + + L+ A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI
Sbjct: 121 AVQDAIAHPRSLSSELINAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIA 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI+ FKP EYWT+EA +K++ F A L ++ ++L Q SI + +A
Sbjct: 181 EREQEIEAFKPLEYWTIEADNEKEKQ------KFVAKLNQYKGEKLTQFSINNTEQAHHA 234
Query: 589 -EQKINSANFQVI--KNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
++ I A+ ++I K K+ R+ P+ TSTLQQ+AA KL F++ TM++AQ+LYEG
Sbjct: 235 RDELITLADGKLIVSKVEKKQRKRQPTAPFTTSTLQQEAARKLGFASKKTMQVAQQLYEG 294
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
+ + DG A GLITYMRTD ++++DEA +IR +I +RYG + P+ P +Y K KNAQE
Sbjct: 295 IDIGDG-AVGLITYMRTDSVNLADEAIADIRDVIEKRYGKDNLPK-NPVQYKTKAKNAQE 352
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEAIRPT R P L+ +L D LKLY+LIW RT+ACQM PA + + VD+ E
Sbjct: 353 AHEAIRPTSAHRYPDTLAKVLTIDQLKLYTLIWQRTIACQMTPAILDTVAVDLA-CGEGN 411
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
FR++ S + GF A Y++ G K+ +E+++ +L L+ G+ + + + +
Sbjct: 412 NFRANGSTLVHAGFMAVYQE---GVDDSKQGDEDEK-----MLPPLEVGEQVKVANIRAE 463
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PP RYSE SLVK LEE GIGRPSTYA+ + L R Y + + YP GR+V+
Sbjct: 464 QHFTEPPPRYSEASLVKALEEFGIGRPSTYATIISTLLQREYAILDKKRFYPTDVGRIVN 523
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
FL+ +F DY+FTA +E ELD +S G EW ++ +W +F + L + E
Sbjct: 524 KFLTEHFQRYVDYNFTAQLEDELDAISRGEKEWIPVMDKFWKKF-------KKLVDEKTE 576
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAKTLY 1004
+ K + D +CP CG+ R G G FIGC+ +P C+Y + +
Sbjct: 577 TVQRKDVTQEVL------DEACPKCGKPL----TKRLGKRGSFIGCSAYPDCDY-TRNID 625
Query: 1005 GDD 1007
GD+
Sbjct: 626 GDN 628
Score = 44.3 bits (103), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 935 CAQSLHIHQVEKMLEKTFGDSLFAS------LP--NKDRSCPVCGEGTLIFKVSRFGAGY 986
C +LH+ Q K G S + + +P N +CP C GTL+ + SRFG +
Sbjct: 648 CNSALHVKQARNG-SKFIGCSNYPTCKHTEPMPEDNTGVTCPACKTGTLVRRKSRFGT-F 705
Query: 987 FIGCNQHPRCNY 998
F C+ +P CNY
Sbjct: 706 FYSCSTYPTCNY 717
>gi|253995662|ref|YP_003047726.1| DNA topoisomerase I [Methylotenera mobilis JLW8]
gi|253982341|gb|ACT47199.1| DNA topoisomerase I [Methylotenera mobilis JLW8]
Length = 864
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 309/793 (38%), Positives = 462/793 (58%), Gaps = 58/793 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+++VES +KAK ++ YLG +EVL SYGHVRDL ++G+V ++ F+M +++ H+
Sbjct: 4 LLIVESPSKAKTLKKYLGSDFEVLASYGHVRDLIPKNGAVDTENQFAMKYDIIERNSKHV 63
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ A+++ LA+DPDREGEAI+WHI E + + L +N + RVVFHEIT+ +++
Sbjct: 64 DAIAKAVKNADSIYLATDPDREGEAISWHIAE-ILKSKKLLKNKLMKRVVFHEITKGAVE 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R+I +V A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +RE
Sbjct: 123 HAIAEPRDISMPMVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIVERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDK-KESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
+EI+ FK QEYW++ LD K H F A L ++++ Q ++ +H + DI
Sbjct: 183 LEIEAFKSQEYWSIH--LDALKHQHG-----FKAKLVQLNNQKVEQFTVINHDQQSDIVG 235
Query: 591 KI---NSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
K+ ++ V + K+ R P+ TSTLQQ+A KL F+ + M++AQ+LYEGV
Sbjct: 236 KLLLASAGKTTVSRVEKKQRSRSPAAPFTTSTLQQEAVRKLGFTTSRAMRVAQQLYEGVD 295
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ G GLITYMRTD ++ EA +IR + + + + + P+ P Y K K+AQEAH
Sbjct: 296 V-GGGTVGLITYMRTDSFSLATEAVMQIRDYVKKNFDTEYLPK-SPVMYKTKSKSAQEAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPTDI R P + L+++ KLY +IW R +ACQM PA + VD+ ++ +F
Sbjct: 354 EAIRPTDISRTPTSVRQYLNDEQFKLYEMIWKRALACQMAPAKFDAVSVDLSVGSDANLF 413
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ + F GF A Y + E++ L +L+TG+ L + ++ +QH
Sbjct: 414 RATGQTLVFPGFIAVYMEGSDDEEEEAESK----------LPNLETGEILTVEKIYGEQH 463
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SLVK LEE GIGRPSTYAS + LQDR YV + + P GR+V+ F
Sbjct: 464 FTEPPPRYSEASLVKVLEEYGIGRPSTYASIISTLQDREYVLLDKKRFTPTDVGRVVNKF 523
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L+ +F++ DY FTA++E LD+V+ G +W L+ ++W F+ Q +H K
Sbjct: 524 LTEHFTKYVDYDFTANLENALDSVAEGERDWVPLMDEFWQDFN------QQIH----NKA 573
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGC---NQHPRCNYIAKTLY 1004
+ G+ L D +CP CG+ L ++SRFG+ FIGC N P+C+Y +++
Sbjct: 574 DVERPGNELI------DEACPKCGK-PLQKQLSRFGS--FIGCTGYNDTPKCDY-KRSID 623
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTG--YLPKRASV 1062
G N D P IG A+ +++ L +GPYG Y+Q+G G PKR S+
Sbjct: 624 G--------TANAGTD-PVSIGVDAATSKEIYLMNGPYGPYLQVGMAVEGEKKKPKRVSI 674
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKP 1122
+ + LE A LL P +LG HP+ + I+ + R G + H S+PKN+
Sbjct: 675 PKEIALADVNLETANMLLSLPRDLGLHPETNKKIIANIGRFGPYINHDAKFKSIPKNLSV 734
Query: 1123 NDVTLEKALEFLS 1135
+ L+ A+ L+
Sbjct: 735 FSIDLDGAVALLA 747
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 14/121 (11%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+ +G HP + +K++ G +G Y+ + + +PK SV SI L+ A+ LL
Sbjct: 695 PRDLGLHPETNKKIIANIGRFGPYIN-HDAKFKSIPKNLSVF------SIDLDGAVALLA 747
Query: 1082 Y------PV-NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFL 1134
P+ +LG+HP + I + R G V+H + A++PK+++P +T+E+ALE L
Sbjct: 748 QAHTGPAPLCSLGSHPTEDGQIEVFAGRYGPYVQHGKLRATLPKSIEPESLTMEEALELL 807
Query: 1135 S 1135
S
Sbjct: 808 S 808
>gi|161830529|ref|YP_001595977.1| DNA topoisomerase I [Coxiella burnetii RSA 331]
gi|161762396|gb|ABX78038.1| DNA topoisomerase I [Coxiella burnetii RSA 331]
Length = 765
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 287/652 (44%), Positives = 399/652 (61%), Gaps = 36/652 (5%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
KS+VVVES KAK I+ YLG ++V+ SYGHVRDL + G+V P+D F M ++
Sbjct: 3 KSLVVVESPAKAKTIEKYLGKDFKVMASYGHVRDLIPKEGAVDPEDHFKMHYQAIERNIR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I AL NL LA+DPDREGEAIAWH+ +ML+ ++ L + +RVVFH+IT+ +
Sbjct: 63 HMDAIAKALKPCHNLYLATDPDREGEAIAWHVKQMLESRNGLKDK-KFSRVVFHQITKKA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
++ A++ R+I +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +
Sbjct: 122 VQHAIENPRDISMDLVNAQQARRALDYLVGFNLSPLLWKKIRPGLSAGRVQSPALRLIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE+EI+ F+ QEYWT+ A + H+ F A L FQ ++L Q SI + +A +
Sbjct: 182 REIEIENFESQEYWTIHA-----DCHAQQQ-PFDARLIEFQGEKLEQFSIVNEKQAHETR 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
I A V K KR R P+ITST+QQ+AA KL FSA+ TM++AQ+LYEGV
Sbjct: 236 DAITQAANGKLTVAKVVKRERKRNPAPPFITSTMQQEAARKLGFSASKTMQIAQQLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L + A GLITYMRTD + ++ EA +EIR LI E+YG + PE+ R Y K KNAQEA
Sbjct: 296 NLGEEGAMGLITYMRTDSVTLASEALQEIRQLIEEKYGQENVPEQT-RIYKTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT R P L L+ D LKLY+LIW RT+ACQM AT+ + VD+ + +
Sbjct: 355 HEAIRPTSAFRTPENLKKYLNSDQLKLYTLIWKRTIACQMIEATLHTVAVDLKAPN--AI 412
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ S + GF + Y++ K+ EE+D +L L+ G + + E++ +Q
Sbjct: 413 FRANGSTIVKPGFISVYQETFDDK---KKEEESDSK----MLPPLEEGQTVDVNEIKSEQ 465
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+ P RY+E SLVK LEE IGRPSTYAS + L++R YV V ++ GR+V+
Sbjct: 466 HFTESPPRYTEASLVKALEEYDIGRPSTYASIIATLKNRKYVDVDNKRFIATDVGRIVNR 525
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL+HYF++ DY FTA +E ELD+++ G W +L +WS F + + EK
Sbjct: 526 FLTHYFTKYVDYGFTAKLEDELDDIARGEKTWIPVLETFWSPFKNL--------VDVTEK 577
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
++++ + D CP C L ++ R G FIGC +P C+Y
Sbjct: 578 TVKRS-----DVTQEKIDEKCPKCS-AQLSIRLGR--RGRFIGCTAYPDCDY 621
>gi|88811388|ref|ZP_01126643.1| DNA topoisomerase III [Nitrococcus mobilis Nb-231]
gi|88791277|gb|EAR22389.1| DNA topoisomerase III [Nitrococcus mobilis Nb-231]
Length = 774
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 313/794 (39%), Positives = 448/794 (56%), Gaps = 49/794 (6%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES KA+ I YLG +EVL SYGHVRDL + G+V + DF+M +
Sbjct: 2 AKNLVIVESPAKARTINKYLGTDFEVLASYGHVRDLVPKEGAVDTECDFAMKYTTIERNA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A+ + + LA+DPDREGEAI+WH+ E+L+++ L E + RVVF+EIT+
Sbjct: 62 KHVDAIAKAIRKIDTVYLATDPDREGEAISWHLSELLKERGVL-EGKPIHRVVFYEITQR 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I+ A+ R + +LV A ARRALDYL+GF +SPLLW+K+ SAGRVQS AL LI
Sbjct: 121 AIQAAMAHPRGLSTDLVNAQQARRALDYLVGFKLSPLLWKKITSGLSAGRVQSPALRLIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI+ F P+EYWT+EA L++ + F A L+ +R+ Q SI + T+A ++
Sbjct: 181 EREQEIEAFTPREYWTIEADLEQSQQR------FIARLSTLAGERVEQFSINTGTQATEV 234
Query: 589 EQKINSANFQVIKNSK--RSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
++ A ++ +K R R+NP P+ITSTLQQ+A+ KL FS TM++AQ+LYEG
Sbjct: 235 TVRLGQAADGCLRVAKVERKQRRRNPAAPFITSTLQQEASRKLRFSTQKTMRVAQQLYEG 294
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
+ G A GLITYMRTD ++++ EA I+ +I ERYG PE P +Y + KNAQE
Sbjct: 295 IDTGSG-AIGLITYMRTDSVNLAQEAVANIQEVIAERYGRDKLPER-PHRYRTRAKNAQE 352
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEAIRPTD RLP L L +D +LY LIW R++ACQM AT+ + VD+ E
Sbjct: 353 AHEAIRPTDAWRLPDELKAFLTQDQYRLYELIWKRSVACQMIHATINTVAVDLACGSEG- 411
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
VFR++ S + GF A Y + G E+N+R L S++ GD + L E+ +
Sbjct: 412 VFRATGSTIADPGFMAVYSE---GTDDANAAEDNER-----TLPSMQVGDEIKLWEIRPE 463
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PP RYSE SLV+ LEE GIGRPSTYA+ L LQ RNYV +++R P GR+V
Sbjct: 464 QHFTEPPPRYSEASLVRALEERGIGRPSTYAAILSTLQQRNYVVLENRRFRPTDTGRVVI 523
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
FL +F DY FTA ME +LD +S G +W +L +W F ++E
Sbjct: 524 KFLKEHFDRYVDYDFTARMEDDLDAISRGERDWIPVLRAFWEPFK-----------ERIE 572
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
+ + G+ + A D P+ G + ++ R+G IG A + G
Sbjct: 573 DKSKVSRGEVMQARELGVD---PISGR-PVTARLGRYGPYAQIGSANDAEKPSFAGLVQG 628
Query: 1006 DDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSH 1064
+ TL+ + + P+ +G P EK+++ G YG YV+ G K S+
Sbjct: 629 QSIDTITLEEALALFKLPRELGETPQG-EKLVVGIGRYGPYVRYGS-------KFVSLKR 680
Query: 1065 IKDVDSITLEDALELL----RYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNM 1120
D +IT E ALE + N DG I + R G + + A +PK
Sbjct: 681 DDDPYTITRERALERVAEKKEAEANRLIRRFDGAEIEILRGRFGPYITDGKKNARIPKGR 740
Query: 1121 KPNDVTLEKALEFL 1134
+P+++ LE+ + L
Sbjct: 741 EPDELDLEECRQLL 754
>gi|118594051|ref|ZP_01551398.1| DNA topoisomerase I [Methylophilales bacterium HTCC2181]
gi|118439829|gb|EAV46456.1| DNA topoisomerase I [Methylophilales bacterium HTCC2181]
Length = 828
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 306/798 (38%), Positives = 451/798 (56%), Gaps = 72/798 (9%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+++VES +KAK I YLG+ Y+VL SYGH+R+L +S V F M +E+ + + ++
Sbjct: 4 LLIVESPSKAKTIGNYLGNDYQVLASYGHIRNLLPKSEGVD-TSSFEMRYEIGTRSKKYI 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ ++ ++LA+DPDREGEAIAWHIVE+L ++ + E ++R++F EIT+ +I
Sbjct: 63 DAIAKAVKSSDEILLATDPDREGEAIAWHIVEVLNERKVVGEK-KISRIIFGEITKTAII 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
AL R++ LV A AR+ALDYLIGFN+SPLLW K+ SAGRVQS AL LI +RE
Sbjct: 122 EALNNPRQVAQPLVHAQQARQALDYLIGFNLSPLLWSKIRYGLSAGRVQSPALRLIVERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK EYW++ LD + +S P+ L+ + ++ Q +I S + K I +
Sbjct: 182 KEIEGFKSLEYWSIH--LDALKGNS----KIPSKLSILNNNKVEQFTITSAEQEKKIVGE 235
Query: 592 I---NSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ +S +V + K+ R P+ TSTLQQ+A KL F+ TM AQ+LYEG+ +
Sbjct: 236 LLLKSSGKVRVSRVDKKQRTRNPTAPFTTSTLQQEAVRKLGFTTKGTMMTAQQLYEGISI 295
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
+GT GLITYMRTD + +S EA +IR + Y + P++ Y K KNAQEAHE
Sbjct: 296 NEGTV-GLITYMRTDSMSLSGEATSQIRKYLESNYTKDYFPQKA-IGYKTKAKNAQEAHE 353
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT+I R P L L + KLY +IW RT+ACQM PA + +D+ VFR
Sbjct: 354 AIRPTNIERTPQSLRPYLTDQQFKLYEIIWKRTLACQMSPAIFDAVSIDLEVGQGESVFR 413
Query: 769 SSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
+S ++F GF + Y ED D K++ +D+ + L+ G+ L + ++ QH
Sbjct: 414 ASGQTLKFPGFMSVYLEDEDD----QKKDSIDDQK-----IPDLEVGEFLMVDKISGVQH 464
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP R++E SLVK LEE GIGRPSTY+S + LQDR Y ++ + P G +V+ F
Sbjct: 465 FTEPPPRFTEASLVKTLEEHGIGRPSTYSSIISTLQDREYALLEKKRFTPTDVGVVVNNF 524
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L+ +F+ DY FTA++E+ELD+++A W ++ +W +F I QV
Sbjct: 525 LTEHFTNYVDYDFTANLESELDDIAADKKNWLEVIRIFWDQF-----------IKQV--- 570
Query: 948 LEKTFGDSLFASLPNKD--RSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAKTLY 1004
K GD A + KD CP C + L S+ G G F+ C+ +P C++
Sbjct: 571 --KEKGDLDRAKITQKDIGEDCPKCNKPLL----SKLGKRGNFVACSGYPDCDF------ 618
Query: 1005 GDDDEEDTLQRNTNVD---EPKLIGHHPASKEKVLLKSGPYGFYVQLG--EDRTGYLPKR 1059
R++N D EPK++G +K+ + L GPYG Y+QLG ED PKR
Sbjct: 619 ---------TRSSNGDLPQEPKIVGEDELTKKSIYLLIGPYGPYLQLGIPEDGDKVKPKR 669
Query: 1060 ASVS---HIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASV 1116
++ + D+D A +L+ P LG HP+ G+ I+ + R G V H S+
Sbjct: 670 TTIPPEIALADLDETV---AKKLISLPRELGEHPETGKLILANIGRFGPYVNHNGKFKSI 726
Query: 1117 PKNMKPNDVTLEKALEFL 1134
PK D++ E A++ L
Sbjct: 727 PKTENVFDISFETAVDLL 744
>gi|160872902|ref|ZP_02063034.1| DNA topoisomerase I [Rickettsiella grylli]
gi|159121701|gb|EDP47039.1| DNA topoisomerase I [Rickettsiella grylli]
Length = 774
Score = 510 bits (1314), Expect = e-141, Method: Compositional matrix adjust.
Identities = 302/711 (42%), Positives = 418/711 (58%), Gaps = 55/711 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES KAK I+ YLG +E+L SYGH+RDL + G+V P+ F+M + +
Sbjct: 2 AKNLLIVESPAKAKTIKKYLGKEFEILASYGHIRDLIPKEGAVNPEKGFAMQYALIEKNA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A A+ L LA+DPDREGEAIAWHI E + +Q L ++ + RVVFHEIT+
Sbjct: 62 KHMDTIIKAFKNADALYLATDPDREGEAIAWHIYE-ILKQKKLLKSKPIYRVVFHEITKT 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+IK A+ R I +LV A ARRALDYL+GF +SPLLW+K+ SAGRVQS AL LI
Sbjct: 121 AIKAAMLNPRRIAMDLVNAQQARRALDYLVGFTLSPLLWKKVRRGLSAGRVQSPALRLIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI+ FK QEYWT+ A + S + F F A L +Q K+L+Q SI + +A +I
Sbjct: 181 EREEEIEAFKSQEYWTITA-----NNQSNNKF-FAARLIQYQHKKLSQFSITTREKATEI 234
Query: 589 EQKI---NSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
++ + + +VIK K+ R P+ TSTLQQ+A KL F+A TM+LAQ+LYEG
Sbjct: 235 KENLLQRAEGDLEVIKVDKKQRKRNPAAPFTTSTLQQEAGRKLGFTAQRTMRLAQQLYEG 294
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
+ + +G GLITYMRTD +H+S+EA IR LI +RYG PE PR + K +NAQE
Sbjct: 295 IDVGEGLV-GLITYMRTDSVHLSNEAIVSIRELILQRYGEKDLPE-SPRHFRTKSRNAQE 352
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI-GNADES 764
AHEAIRPT + P L L D KLY LIW R +A QM AT+ + +D+ A +
Sbjct: 353 AHEAIRPTHVEFSPEQLKKHLAPDQFKLYELIWKRAVASQMIHATIDTVTIDLSAKAAKD 412
Query: 765 IVFRSSCSRVEFLGFQA----AYEDVDAGAI---RYKENEENDRHEAFAILNSLKTGDPL 817
FR++ S + GF +Y+D A A R K EEN +L +LK GD +
Sbjct: 413 HCFRANGSTIVHAGFMTVYLESYDDSKAKASDDDRIKSEEEN-------MLPALKVGDQV 465
Query: 818 YLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYP 877
L ++ QH T+PP RYSE SLVK LEE IGRPSTY + LQ R YVT+ + P
Sbjct: 466 NLIDMSADQHFTEPPPRYSEASLVKALEERDIGRPSTYVPIISTLQQREYVTLDQKRFKP 525
Query: 878 EFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQ 937
GR+V+ FL+ YF + DY+FTA +E ELD +S G EW LL D+W+ F +
Sbjct: 526 TDVGRIVNKFLTRYFMQYVDYAFTARLEDELDQISRGEKEWVPLLQDFWTPFKTL----- 580
Query: 938 SLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
I E+ +++ D +L D +CP CG+ TL ++ + G FIGC+ +P C+
Sbjct: 581 ---IETTEETVQRK--DVTQEAL---DETCPKCGK-TLSIRLGK--RGRFIGCSGYPECD 629
Query: 998 YIAKTLYGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
Y + + G+ T V EP+++ P + +K G YG ++
Sbjct: 630 Y-TRNMDGE---------VTTVSEPEVVQGRLCPDCGHALHIKIGRYGKFI 670
>gi|300115532|ref|YP_003762107.1| DNA topoisomerase I [Nitrosococcus watsonii C-113]
gi|299541469|gb|ADJ29786.1| DNA topoisomerase I [Nitrosococcus watsonii C-113]
Length = 783
Score = 510 bits (1314), Expect = e-141, Method: Compositional matrix adjust.
Identities = 321/822 (39%), Positives = 456/822 (55%), Gaps = 64/822 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K+VVVVES KAK I+ YLG +EVL SYGHVRDL + G+V P+ F M ++
Sbjct: 3 KNVVVVESPAKAKTIKKYLGKNFEVLASYGHVRDLMPKEGAVDPEHGFKMKYQAIEKNGR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I AL A++L+LA+DPDREGEAI+WH++E+L+++ L E+ + RVVF+EIT +
Sbjct: 63 HVNAIAKALKSADSLLLATDPDREGEAISWHLLELLKEEGVL-EDKAIQRVVFYEITSQA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+ A+ R+I +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC+
Sbjct: 122 VNEAVAHPRDISLDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLICE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EID FK +EYWT+EA + F A LTH ++L Q I + +A +
Sbjct: 182 REKEIDAFKVREYWTLEA------DAAAAKQPFVAKLTHLDGRKLTQFDIENKDQALALV 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
+++ A VIK +R R+NP P+ITSTLQQ+A+ KL FSA TM +AQ+LYEG
Sbjct: 236 ERLTKAAAGELWVIK-VERKQRRRNPAAPFITSTLQQEASRKLGFSAKRTMSVAQQLYEG 294
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
V + DG A GLITYMRTD +++++EA EIR+ I ER+G + P + R + + KNAQE
Sbjct: 295 VDIGDG-AMGLITYMRTDSVNLANEAVGEIRNFIAERFGQNSLPVKS-RTFKTRAKNAQE 352
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI------- 758
AHEA+RPT + R+P L L + KLY LIW RT+ACQM AT+ + VD+
Sbjct: 353 AHEAVRPTSVYRVPEALKPYLKPEQFKLYQLIWRRTIACQMNHATIDAVAVDLDTQKAAP 412
Query: 759 --GNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDP 816
G +FR++ S V GF A Y++ A + EE R L +K GD
Sbjct: 413 ERGEDARGNIFRATGSTVVDPGFMAVYQEGRDDA----KGEEEQRK-----LPPMKEGDR 463
Query: 817 LYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILY 876
+ L ++ +QH T+PP RY+E SLV+ LEE GIGRPSTYA+ + LQ R+Y ++S+
Sbjct: 464 VALLQIRPEQHFTEPPPRYTEASLVRALEEFGIGRPSTYATIISTLQQRDYTVLESKRFQ 523
Query: 877 PEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCA 936
P GR+V+ FL+ +F+ DY FTA +E ELD +S G W +L ++W FS+
Sbjct: 524 PTDVGRVVNRFLTEHFNPYVDYDFTARLEDELDAISRGEKVWIPVLEEFWGPFSARIQEK 583
Query: 937 QSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ ++ + E + + G P R V ++ R+G IG +
Sbjct: 584 EQ-NVSREEAVQARELGVD-----PQSSRPVSV--------RMGRYGPYIQIGSKEDEEK 629
Query: 997 NYIAKTLYGDDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGY 1055
A G + TL+ + + P+ +G P E+V + G +G YV+ Y
Sbjct: 630 PRFAGLQPGQKMDAITLEEALALFKLPRELGFTPGG-ERVSVNIGRFGPYVKYD---NKY 685
Query: 1056 LPKRASVSHIKDVDSITLEDALELLRYPVN------LGNHPKDGQPIMLRLARAGFSVRH 1109
+ R H +I LE AL L+ + P G I + R G V
Sbjct: 686 VSLRGEDPH-----TIPLERALVLIEEKRQADANRVIKVFPDSG--IQVLNGRYGPYVTD 738
Query: 1110 RRTIASVPKNMKPNDVTLEKALEFLSGKDVRRCGRPKGKPKR 1151
VPK P +++LE+A + V+R R G K+
Sbjct: 739 GERNVRVPKEQAPEELSLEQAQTLIHEAPVKRARRKAGSRKK 780
>gi|53803091|ref|YP_115233.1| DNA topoisomerase I [Methylococcus capsulatus str. Bath]
gi|53756852|gb|AAU91143.1| DNA topoisomerase I [Methylococcus capsulatus str. Bath]
Length = 768
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 287/703 (40%), Positives = 417/703 (59%), Gaps = 49/703 (6%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
+ +V+VES KA+ I+ YLG ++V SYGHVRDL + G+V PD DFSM + +
Sbjct: 2 AQHLVIVESPAKARTIEKYLGKSFQVYASYGHVRDLIPKEGAVDPDHDFSMKYAIIEKNK 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+++I A+ A+ L LA+DPDREGEAI+WH+ E+L++Q L ++ V RVVFHEIT+
Sbjct: 62 KHVQAISKAMEKADALYLATDPDREGEAISWHLYELLKEQQVL-DSKPVHRVVFHEITKR 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I A++ + + +L+ A ARRALDYL+GF +SPLLW+K+ SAGRVQS AL +I
Sbjct: 121 AITEAVENPKTLSTDLIHAQQARRALDYLVGFKLSPLLWKKIRRGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE+EI+ F+ QEYWT+EA + ++ + A LTH ++L Q SI + +A+
Sbjct: 181 ERELEIERFEVQEYWTIEAAIQTEDQ------ALSARLTHLAGEKLEQFSIVNEAQAQAT 234
Query: 589 EQKI---NSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
Q + QV++ +R R P+ TSTLQQ+AA KL F+ TM +AQ+LYEG
Sbjct: 235 RQSLLDQARGKLQVVRVEERERKRNPAAPFTTSTLQQEAARKLGFTTRRTMTVAQQLYEG 294
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
+ L G A GLITYMRTD ++++ EA +E+R+LI RYG + P + PR Y K KNAQE
Sbjct: 295 IDL-GGEAVGLITYMRTDSVNLAQEAVQELRALIESRYGKDNLPAQ-PRLYKTKSKNAQE 352
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEAIRPT R P + L D KLYSLIW R++ACQM AT+ + VD
Sbjct: 353 AHEAIRPTSAFRTPESVKAHLTPDQFKLYSLIWKRSVACQMVHATLNTVTVDFACGSADN 412
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
+FR++ S V GF + Y + R EE+D L L G + L +V
Sbjct: 413 LFRATGSTVIHPGFMSVYREG-----RDDMPEESDE----IYLPKLVEGQEVDLKDVTPS 463
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PP RY+E SLVK LEE GIGRPSTYA+ + LQ R+YV ++++ P GR+V+
Sbjct: 464 QHFTEPPPRYTEASLVKALEEYGIGRPSTYATIISTLQQRHYVELENKRFRPTDLGRVVN 523
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
FL+ +F+ DY+FTA++E +LD VS G +W L+ ++W F + I + +
Sbjct: 524 KFLTEHFNRYVDYNFTANLEDDLDAVSRGEKDWIPLMREFWGPFHAL--------IGEKD 575
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
+ L++ D ++ D CP CG L ++ R G F+GC +P+C Y + L G
Sbjct: 576 ESLKR--ADVTHEAI---DEKCPECG-SPLSIRLGR--NGRFVGCTNYPQCKY-TRNLAG 626
Query: 1006 DDDEEDTLQRNTNVDEPKLIG--HHPASKEKVLLKSGPYGFYV 1046
+ E+ EP+++ P +++K+G YG ++
Sbjct: 627 KESEQ---------TEPEVVEGRQCPKCHSPLVIKTGRYGRFI 660
>gi|344339707|ref|ZP_08770635.1| DNA topoisomerase I [Thiocapsa marina 5811]
gi|343800443|gb|EGV18389.1| DNA topoisomerase I [Thiocapsa marina 5811]
Length = 771
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 295/701 (42%), Positives = 415/701 (59%), Gaps = 48/701 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG +EV+ SYGHVRDL + G+V ++ F+M +++ H
Sbjct: 2 NLVIVESPAKAKTIKKYLGPDFEVIASYGHVRDLVPKEGAVDTENGFAMKYQIIDRNEKH 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+++I L A+ L LA+DPDREGEAI+WH+ E+L+ + L + V RVVF+EIT+ ++
Sbjct: 62 VQAIAKKLKEADALYLATDPDREGEAISWHLYELLKSRRQLGKR-PVFRVVFNEITKRAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A+ RE+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC+R
Sbjct: 121 QDAVANPRELSYDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLICER 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW++EA K+ F A L F+ +++ Q SI A + Q
Sbjct: 181 EDEIEAFASREYWSIEADAAKEARR------FTAKLVEFEGEKVEQFSIVDGERAATVHQ 234
Query: 591 KINSANFQVIK--NSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+ A +K +R ++NP P +ITSTLQQ+AA KL F+A TM++AQ+LYEGV
Sbjct: 235 TLEQAAGGKLKVDEVERKQRKRNPAPPFITSTLQQEAARKLGFTAQRTMRVAQQLYEGVD 294
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ G GLITYMRTD ++++ EA EIR+ + ER+G++H PE+ PR Y K KNAQEAH
Sbjct: 295 V-GGGPIGLITYMRTDSVNLAQEALDEIRAYVTERFGANHLPEQ-PRFYKTKAKNAQEAH 352
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT ++P + L D KLY LIW RT+ACQM A + Q+ + + +A E +F
Sbjct: 353 EAIRPTSAYQVPKEIRAHLSADQFKLYELIWKRTLACQMAHALINQVAITL-SAGEGNLF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S V GF + Y + A ++EE +L +K GD + L + +QH
Sbjct: 412 RATGSTVAEPGFMSVYLEGRDDAKGADDDEER-------MLPEMKAGDLVDLLAIRPEQH 464
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SLVK LEE GIGRPSTYAS + LQDR YV + ++ P GR+V+ F
Sbjct: 465 FTEPPPRYSEASLVKALEEYGIGRPSTYASIISTLQDREYVVLDAKRFLPTDVGRVVNRF 524
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L+ YF+ DY FTA +E +LD VS G EW LL +W F + E
Sbjct: 525 LTEYFTSYVDYDFTARLEDDLDAVSRGEGEWVPLLEQFWKPFKE--------RVDHTEAS 576
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
++++ + D +CP CG G L ++ R G FIGC +P C+Y + L D
Sbjct: 577 VKRS-----DVTQERIDETCPKCG-GQLSIRLGR--NGRFIGCTNYPDCDY-TRDLNPDK 627
Query: 1008 DEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
E D P+LI P + +K G YG ++
Sbjct: 628 AE---------ADAPELIEGRTCPLCNSALEIKRGRYGKFI 659
>gi|374261809|ref|ZP_09620387.1| DNA topoisomerase I [Legionella drancourtii LLAP12]
gi|363537903|gb|EHL31319.1| DNA topoisomerase I [Legionella drancourtii LLAP12]
Length = 761
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 298/703 (42%), Positives = 420/703 (59%), Gaps = 50/703 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK IQ YLG YEVL SYGHVRDL AR GSV PD +FSM +
Sbjct: 3 KHLVIVESPAKAKTIQKYLGSDYEVLASYGHVRDLPARKGSVNPDQNFSMTYVPLEKNAR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I L +++L+LA+DPDREGEAI+WHI E++++++ L + V R+ F+EIT+++
Sbjct: 63 HIETIAKMLKKSDSLLLATDPDREGEAISWHIFELMKEKNLLKDK-EVHRIFFNEITKSA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A+ R I +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +
Sbjct: 122 IQDAINNPRAISMDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F QEYW + A ++ F A LTH++S++L Q ++ + +A I+
Sbjct: 182 REEEIERFVSQEYWKILAQCQHEK------VPFEARLTHYKSEKLQQFTVINEEQALQIK 235
Query: 590 QK-INSA--NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
IN A + V + K+ RK P+ITSTLQQ+AA KL F+A +M +AQ+LYEG+
Sbjct: 236 ADLINQAQGSLIVTQIEKKQRKRKPSPPFITSTLQQEAARKLGFTARKSMMVAQQLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ GT GLI+YMRTD ++++ EA EIR I ERYG+ + P PR Y K KNAQEA
Sbjct: 296 DIGTGTV-GLISYMRTDSVNLAVEAVDEIREYITERYGASNCPA-SPRVYKTKSKNAQEA 353
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT ++R P M+ L D KLYSLIW RT+ACQM A + + VD+ D V
Sbjct: 354 HEAIRPTSVKRTPEMVQAALTTDQYKLYSLIWKRTIACQMADALMDTVAVDLSCGDAGNV 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ S + F GF A YE+ +++ + D E ++L L G+ + + ++ Q
Sbjct: 414 FRANGSTITFPGFLAVYEEG-------RDDSKEDDSEG-SLLPILSVGEKVKVHDIAANQ 465
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RYSE +LVK LEE IGRPSTYAS + LQ R YV V + +P GR+V+
Sbjct: 466 HFTEPPPRYSEATLVKALEEYDIGRPSTYASIIHTLQQREYVIVDKKRFFPTDVGRIVNR 525
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL+ YF+ DY FTA +E LD ++ G EW +L ++W F + Q++
Sbjct: 526 FLTGYFTRYVDYKFTAQLEDTLDAIARGEKEWIPVLEEFWQPF-----------VRQIQT 574
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAKTLYG 1005
E+ + + D CP C + I R G G FIGC +P C+Y + + G
Sbjct: 575 TDEQVQRKDVTTEI--LDEKCPKCQKPLSI----RLGKRGRFIGCTGYPECDY-TQDMAG 627
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
D E+ +EP+++ P + +K+G YG ++
Sbjct: 628 QDAEK---------NEPEVVEGRVCPVCSSALHIKTGKYGRFI 661
>gi|288941783|ref|YP_003444023.1| DNA topoisomerase I [Allochromatium vinosum DSM 180]
gi|288897155|gb|ADC62991.1| DNA topoisomerase I [Allochromatium vinosum DSM 180]
Length = 764
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 286/654 (43%), Positives = 394/654 (60%), Gaps = 42/654 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG +EV+ SYGHVRDL + G+V PD F+M +++ H
Sbjct: 2 NLVIVESPAKAKTIKKYLGPSFEVVASYGHVRDLVPKEGAVDPDHGFAMKYQIIERNEKH 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
++SI L E L LA+DPDREGEAI+WH+ E+L+ + L + V RVVF+EIT+ ++
Sbjct: 62 VQSIAKKLKDCEALYLATDPDREGEAISWHLHELLKSRRQLGDK-PVHRVVFNEITKRAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A+ R+I +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC+R
Sbjct: 121 QDAIANPRQISYDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLICER 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYWT+EA K D F A LT F +++ Q +I A +++
Sbjct: 181 EAEIEAFVQREYWTIEADTAK------DARPFVARLTTFAGEKVEQFTITDEARATEVKT 234
Query: 591 KINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+ A +V + ++ R+ P+ITSTLQQ+AA KL F+A TM++AQ+LYEGV
Sbjct: 235 ALEQAAGGKLKVEQVERKQRKRQPAPPFITSTLQQEAARKLGFTAQRTMRVAQQLYEGVD 294
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ G A GLITYMRTD ++++ EA EIR+ + ERY P+ PR + K KNAQEAH
Sbjct: 295 VGSG-AVGLITYMRTDSVNLAQEAIDEIRAYVVERYSEADLPD-APRLFKTKAKNAQEAH 352
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT IRR PA + L + +LY LIW RT+ACQM A + Q+ VD+ +A +
Sbjct: 353 EAIRPTSIRREPAAVKAHLTVEQFRLYELIWKRTLACQMAHALINQVAVDL-SAGAGNML 411
Query: 768 RSSCSRVEFLGFQAAY---EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVEL 824
R++ S V GF Y D GA +++ DR +L +K G+ + L +
Sbjct: 412 RATGSMVVDPGFMRVYLEGRDDAKGA-----DDDEDR-----MLPEMKVGELVDLLAIRP 461
Query: 825 KQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMV 884
+QH T+PP RYSE +LVK LEE GIGRPSTYAS + LQDR YV + + P GR+V
Sbjct: 462 EQHFTEPPPRYSEATLVKALEEFGIGRPSTYASIISTLQDREYVILDKKRFVPTDVGRVV 521
Query: 885 SAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV 944
+ FL+ YF+ DY FTA +E +LD VS G +W LL +W F Q H+ +
Sbjct: 522 NRFLTDYFTSYVDYDFTARLEDDLDAVSRGEGDWVPLLERFWRPFKDLVDHTQE-HVKRS 580
Query: 945 EKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+ E+ + +CP CG G L ++ R G FIGC Q+P C+Y
Sbjct: 581 DVTQERI------------EETCPKCG-GQLAIRLGR--NGRFIGCTQYPECDY 619
>gi|260575924|ref|ZP_05843919.1| DNA topoisomerase I [Rhodobacter sp. SW2]
gi|259021850|gb|EEW25151.1| DNA topoisomerase I [Rhodobacter sp. SW2]
Length = 685
Score = 507 bits (1305), Expect = e-140, Method: Compositional matrix adjust.
Identities = 280/634 (44%), Positives = 380/634 (59%), Gaps = 31/634 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
VVVVES KAK I YLG Y VL SYGHVRDL A+ GSV P+ DF+M+WEV + + H+
Sbjct: 3 VVVVESPAKAKTINKYLGPGYTVLASYGHVRDLPAKDGSVDPEHDFAMLWEVAAESKKHV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
++I AL + LILA+DPDREGEAI+WH+ E L +L + V+RV F+ IT+A++
Sbjct: 63 RAIAEALKTDDELILATDPDREGEAISWHLQEALAS--SLKKGKKVSRVTFNAITKAAVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D LV AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS L LI +RE
Sbjct: 121 EAMKNPRQVDVPLVDAYLARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVCLRLIVERE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
MEI+ F+ +E+WTV A L F A LT ++L++ I + A+
Sbjct: 181 MEIEAFRAKEFWTVGATLATPRGQE-----FEARLTVLGGRKLDKFDIPTAEAAELAVHS 235
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + F V + R P++TSTLQQ+A+ K A M AQ+LYE
Sbjct: 236 VQNRTFTVQSVEAKPAARNPYAPFMTSTLQQEASRKFGMGAKQCMNAAQRLYE------- 288
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
AG ITYMRTDG+ ++ EA R+ I +R+G+ + P+ PR Y K KNAQEAHE IR
Sbjct: 289 --AGHITYMRTDGIDMAPEAVMAARAEIKDRFGAAYVPD-SPRMYKNKAKNAQEAHECIR 345
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PTD+ P L L + D KLY LIW RT+A QM A + + VD+ + D +V R++
Sbjct: 346 PTDMAAGPEKLR-LTEADQRKLYDLIWKRTIASQMAAARLERTTVDVASPDGQVVLRATG 404
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
V F GF YE+ +++EE D L + G+ + +V +QH TQP
Sbjct: 405 QVVLFDGFLKIYEE-------GRDDEEGDEGR----LPQIMQGEAVDKRKVLPEQHFTQP 453
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E +LVK++EELGIGRPSTYAS L + DR YV L PE +GR+V+AFLS+Y
Sbjct: 454 PPRYTEATLVKRMEELGIGRPSTYASILTTIVDREYVKKDKNRLIPEDKGRLVTAFLSNY 513
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F +Y FTAD+ET+LD+VSAG ++K +L +W FS+ L I +V +++
Sbjct: 514 FRRYVEYDFTADLETQLDDVSAGSRDYKEVLARFWRDFSAAIAETADLRIGEVLTKIDEF 573
Query: 952 FGDSLFASLPN--KDRSCPVCGEGTLIFKVSRFG 983
L+ + R C VCG G L K +R G
Sbjct: 574 LAPHLYPLREDGSDPRICQVCGTGRLHLKTARSG 607
>gi|292493775|ref|YP_003529214.1| DNA topoisomerase I [Nitrosococcus halophilus Nc4]
gi|291582370|gb|ADE16827.1| DNA topoisomerase I [Nitrosococcus halophilus Nc4]
Length = 784
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 323/823 (39%), Positives = 456/823 (55%), Gaps = 65/823 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++VVVES KAK I+ YLG +EV+ SYGHVRDL + G+V P+ F+M ++V
Sbjct: 3 KNLVVVESPAKAKTIKKYLGKDFEVMASYGHVRDLMPKEGAVDPEHGFAMKYQVIEKNSR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I AL A+ L+LA+DPDREGEAI+WH++E+L+++ AL E ++ RVVF+EIT+ +
Sbjct: 63 HVDAIAKALKKADALLLATDPDREGEAISWHLLELLKERGAL-EGKSIKRVVFYEITQQA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+ A+ R+I ++LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC+
Sbjct: 122 VNEAIAHPRDISSDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLICE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD-I 588
RE EI+ FK QEYWT+EA + F A LTH +L Q I + A+ +
Sbjct: 182 REKEIEAFKIQEYWTLEA------DAAASKHPFVAKLTHLDGHKLGQFDIDNGDRAQALV 235
Query: 589 EQ--KINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
EQ K S VIK +R R+NP P+ITSTLQQ+A+ KL FS TM +AQ+LYEG
Sbjct: 236 EQLTKAASGELLVIK-VERKQRRRNPAAPFITSTLQQEASRKLGFSTKRTMSVAQQLYEG 294
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
V + DG A GLITYMRTD +++++EA KE+R I +G P + P+ + + KNAQE
Sbjct: 295 VDIGDG-AVGLITYMRTDSVNLANEAVKELRDFIAGHFGEKSLPAK-PKTFKTRAKNAQE 352
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADE-- 763
AHEAIRPT + R P L L + KLY LIW RT+ACQM AT+ + VD+
Sbjct: 353 AHEAIRPTSVYRTPEELKPHLKPEQFKLYQLIWRRTIACQMNHATIETVAVDLDTRKSVP 412
Query: 764 --------SIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGD 815
S +FR++ S V GF A Y++ G K EE IL +K GD
Sbjct: 413 EKGVSNTGSNIFRATGSTVVDPGFMAVYQE---GRDDTKAEEEQ------RILPPMKEGD 463
Query: 816 PLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRIL 875
+ L + +QH T+PP RY+E SLV+ LEE GIGRPSTYA+ + LQ R+Y ++++
Sbjct: 464 RVELVRIRPEQHFTEPPPRYTEASLVRALEEFGIGRPSTYATIISTLQQRSYALLENKRF 523
Query: 876 YPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTC 935
+P GR+V+ FL+ +F+ DY FTA +E +LD +S G W +L ++W F
Sbjct: 524 HPTDVGRVVNRFLTEHFNPYVDYDFTARLEDQLDAISRGEKVWIPVLEEFWEPFLGRIQE 583
Query: 936 AQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPR 995
+ + + E + + G P R V ++ R+G IG +
Sbjct: 584 KEQ-SVSREEAVQARELGID-----PKSGRPVSV--------RIGRYGPYVQIGSKEDEE 629
Query: 996 CNYIAKTLYGDDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTG 1054
A G + TL+ + E P+ +G P EKV + G +G YV+
Sbjct: 630 KPRFAGLRPGQKMDTITLEEGLALFELPRELGFSPEG-EKVSVNIGRFGPYVKYD---NK 685
Query: 1055 YLPKRASVSHIKDVDSITLEDALELLRYPVN------LGNHPKDGQPIMLRLARAGFSVR 1108
Y+ R +D +I LE ALEL++ + P G I + R G V
Sbjct: 686 YVSLRG-----EDPYTIALERALELIQEKKQADANRVIKVFPDSG--IQILNGRYGPYVT 738
Query: 1109 HRRTIASVPKNMKPNDVTLEKALEFLSGKDVRRCGRPKGKPKR 1151
A VPK+ P ++LE+A ++ +R R G K+
Sbjct: 739 DGERNARVPKDQAPEKLSLEQAQTLINEAPAKRARRKTGTRKK 781
>gi|406943512|gb|EKD75490.1| hypothetical protein ACD_44C00112G0004 [uncultured bacterium]
Length = 762
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 286/655 (43%), Positives = 405/655 (61%), Gaps = 39/655 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES KAK ++ YLG +E+L SYGHVRDL ++G+V P+ F M + +
Sbjct: 2 AKNILIVESPAKAKTLKKYLGKDFEILASYGHVRDLIPKTGAVDPEHHFKMKYALIEKNE 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
HL +I A+ AENL LA+DPDREGEAI+WH+ E+L+Q+ L + V RVVF+EIT
Sbjct: 62 KHLDAIAKAMKQAENLYLATDPDREGEAISWHLQEILKQKKILKDK-KVHRVVFYEITRT 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ R++ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI
Sbjct: 121 AVLHAVAHPRDVSMDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI++F QEYWT+ A E D +FP+ L +++K+L Q S+ + T+AK+I
Sbjct: 181 EREEEIEKFISQEYWTIIAAAQSSE----DAITFPSKLIEYKNKKLTQFSVTNETQAKEI 236
Query: 589 EQKINSAN---FQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
++ + A V+K K+ R+ P+ TSTLQQ+AA KL F+ TM++AQ+LYEG
Sbjct: 237 KETLQEAAQGFLYVVKVEKKQRKRQPSAPFTTSTLQQEAARKLGFTTQRTMRIAQQLYEG 296
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
+ + +G+ GLITYMRTD ++++ EA EIR++I +RYG PE PR++ K KNAQE
Sbjct: 297 IDVGEGSV-GLITYMRTDSVNLAQEALAEIRAVIAKRYGEEFLPE-APREFKTKSKNAQE 354
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEAIRPT +P + L + KLY LIW RT+ACQM AT+ + VD+ + +
Sbjct: 355 AHEAIRPTHPDFIPDQIKEKLTTEQYKLYDLIWKRTLACQMIHATLDTVAVDL-SCGQGN 413
Query: 766 VFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVEL 824
FR++ S + GF Y ED D G K +EE + IL LK G+ + L +E
Sbjct: 414 RFRANGSVITNPGFMLVYLEDRDDG----KPDEEKEE-----ILPPLKEGEKVKLLNIEG 464
Query: 825 KQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMV 884
QH T+PP RYSE SLVK LEE GIGRPSTYAS + LQ+R+YV + + +P GR+V
Sbjct: 465 HQHFTEPPPRYSEASLVKALEERGIGRPSTYASIISTLQNRDYVQLLQKRFHPTDVGRVV 524
Query: 885 SAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV 944
S FL+ YF++ DY FTA++E ELD ++ G +W +L ++W F + ++ +I +
Sbjct: 525 SKFLTLYFTKYVDYDFTANLEDELDAIARGEKQWVPVLEEFWQPFDTLVKDVEA-NISRK 583
Query: 945 EKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNY 998
E E+ + +CP C + I R G G FIGC P C+Y
Sbjct: 584 EVTQEEI------------NEACPKCQKPLAI----RLGKRGRFIGCTAFPECDY 622
>gi|345869601|ref|ZP_08821558.1| DNA topoisomerase I [Thiorhodococcus drewsii AZ1]
gi|343922984|gb|EGV33681.1| DNA topoisomerase I [Thiorhodococcus drewsii AZ1]
Length = 768
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 302/701 (43%), Positives = 414/701 (59%), Gaps = 48/701 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG +EV+ SYGHVRDL + G+V PD F+M +++ H
Sbjct: 2 NLVIVESPAKAKTIKKYLGADFEVIASYGHVRDLVPKEGAVDPDHGFAMKYQIIDRNEKH 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+++I L A+ L LA+DPDREGEAI+WH+ E+L+ + L + V RVVF+EIT+ ++
Sbjct: 62 VQAIAKKLKEADTLYLATDPDREGEAISWHLYELLKSRRQLGKR-PVYRVVFNEITKRAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A+ RE+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC+R
Sbjct: 121 QDAIANPRELSYDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLICER 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E E++ F QEYWT+EA S D SF A LT F +++ Q SI A +++
Sbjct: 181 ENEVEAFVRQEYWTIEA------DASKDAKSFSAKLTTFGGEKVEQFSITDEGRAAEVKA 234
Query: 591 KINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+ A +V K ++ R P+ITSTLQQ+AA KL F+A TM++AQ+LYEGV
Sbjct: 235 TLEQAADGTLKVEKVERKQRKRFPAPPFITSTLQQEAARKLGFTAQRTMRVAQQLYEGVD 294
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ G A GLITYMRTD +++++EA EIRS I ERYG+ P++ R Y K KNAQEAH
Sbjct: 295 V-GGGAVGLITYMRTDSVNLAEEALTEIRSHIAERYGADDLPDQA-RHYKTKSKNAQEAH 352
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT I R P+ + L + KLY LIW RT+ACQM A + Q+ +D+ +A +
Sbjct: 353 EAIRPTSILREPSAIKAHLTVEQAKLYELIWKRTLACQMNHALINQVAIDL-SAGAGNLL 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S V GF Y + A +NEE +L LK GD + L +V +QH
Sbjct: 412 RATGSVVAEPGFMRVYLEGRDDAKSADDNEER-------MLPDLKEGDLVELIQVRAEQH 464
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SLVK LEE GIGRPSTYAS + LQDR YV + + P GR+V+ F
Sbjct: 465 FTEPPPRYSEASLVKALEEFGIGRPSTYASIISTLQDREYVVLDKKRFSPTDVGRVVNKF 524
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L+ YF+ DY FTA +E +LD VS G EW LL +W F Q H+ + +
Sbjct: 525 LTEYFTSYVDYDFTARLEDDLDAVSRGEGEWIPLLERFWRPFKDQVDHTQE-HVKRSDVT 583
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
E+ D +CP CG G L ++ R G FIGC +P C+Y + L D
Sbjct: 584 QERI------------DETCPKCG-GQLSIRLGR--NGRFIGCTNYPDCDY-TRDLNADK 627
Query: 1008 DEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
E++ P+++ P + +K G YG ++
Sbjct: 628 AEQEA---------PEIVEGRSCPLCGSALEVKRGRYGKFI 659
>gi|350572378|ref|ZP_08940678.1| DNA topoisomerase TopA [Neisseria wadsworthii 9715]
gi|349790162|gb|EGZ44081.1| DNA topoisomerase TopA [Neisseria wadsworthii 9715]
Length = 764
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 287/699 (41%), Positives = 407/699 (58%), Gaps = 44/699 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++++VESVTKAK +Q YLG ++VL SYGHVRDL ++G+V PD+DF+M +++ +
Sbjct: 3 KNLLIVESVTKAKSMQKYLGSDFQVLASYGHVRDLIPKNGAVDPDNDFAMKYQIVAKNSK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I A AEN+ LA+DPDREGEAI+WH+ E+L+ + L +NI R+VFHE+T+ +
Sbjct: 63 HVDAIVAAAKEAENIYLATDPDREGEAISWHLWEILKSKRGL-KNIHPQRIVFHEVTKKA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
++ A+Q RE+D NLV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC+
Sbjct: 122 VQEAIQNPRELDFNLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLICE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI F+ QEYW+V +D + F A LTH+ +L Q S+ +I
Sbjct: 182 RENEIRAFESQEYWSVH--MDSHKGRQ----KFSAKLTHWLGNKLEQFSLPDEASQAEIL 235
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ + V K+ RK PY TST+QQDA KL + TM+ AQ+L+EG+ +
Sbjct: 236 KGLEGEKAVVADVVKKKATRKPVAPYTTSTMQQDAVRKLGMTTDRTMRTAQQLFEGIDVG 295
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G A GLITYMRTD + +S++A E+R I + G+ P+E R Y K KNAQEAHEA
Sbjct: 296 QG-AVGLITYMRTDSVSLSEDAITELRHYIENKIGADFLPKEA-RAYKTKSKNAQEAHEA 353
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT + R P + L D KLY +IW RT+ACQM A VDI VFR
Sbjct: 354 IRPTSVYRTPESVKPFLSNDQFKLYQMIWQRTVACQMVDAKFDATTVDIHVGQG--VFRV 411
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ + F GF Y++ G E+E N + L LK GD L + ++ +QH T
Sbjct: 412 TGQVLAFAGFLNVYQE---GQDEDYEDENNKK------LPDLKLGDELPVDKLYGEQHFT 462
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP R++E +LVK LE+ GIGRPSTYAS +K L+DR YVTV R P G +V+ FL+
Sbjct: 463 QPPPRFNEATLVKALEDFGIGRPSTYASIIKTLKDREYVTVDQRRFMPTDTGDIVNKFLT 522
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F + DY FTA +E LD +++G +W ++ +W F ++++E
Sbjct: 523 EHFEQYVDYDFTAKLEDSLDEIASGKRKWIPVMDKFWKGFH--------------KQVVE 568
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDE 1009
K + + + CP CG L K + G FI C+ +P C+Y T ++
Sbjct: 569 KEGIERAKITTEELEEICPKCGNHKLQIKFGK--RGRFIACSGYPDCDY---TRNVNETA 623
Query: 1010 EDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
ED + +DEP ++ P +++ K G YG ++
Sbjct: 624 EDAAK---ELDEPTIVEGRECPKCGGQLVYKKGRYGKFI 659
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 17/82 (20%)
Query: 920 GLLVDYWSRFSSYCTCA---QSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLI 976
G LV R+ + CA + HI +EK E +CP CG+G LI
Sbjct: 646 GQLVYKKGRYGKFIGCANYPKCKHIEPLEKPKETGV-------------ACPKCGKGQLI 692
Query: 977 FKVSRFGAGYFIGCNQHPRCNY 998
+ SR+G F CN +P C+Y
Sbjct: 693 ERKSRYGK-LFYSCNTYPDCDY 713
>gi|325267008|ref|ZP_08133678.1| DNA topoisomerase TopA [Kingella denitrificans ATCC 33394]
gi|324981508|gb|EGC17150.1| DNA topoisomerase TopA [Kingella denitrificans ATCC 33394]
Length = 791
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 279/650 (42%), Positives = 382/650 (58%), Gaps = 36/650 (5%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++++VES K K I+ YLG +EVL S+GHVRDL ++G+V PDD+F+M +E+P+ +
Sbjct: 18 KNLLIVESPNKIKSIKKYLGGDFEVLASFGHVRDLIKKNGAVNPDDNFAMKYEIPAKSVK 77
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHE-NITVARVVFHEITEA 468
H+ I A AE++ LA+DPDREGEAI+WHI E+L+ + + + + RVVFHE+T
Sbjct: 78 HVDEIVKAAKEAEHIYLATDPDREGEAISWHIAEILKSKRGMKDVEKKIQRVVFHEVTPK 137
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ AL++ R +D +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 138 GVQAALKSPRGLDIHLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 197
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYW+V LD SH T F A LT +Q +L Q S+ I
Sbjct: 198 ERENEIRAFETQEYWSVH--LD---SHKGRT-KFSAKLTQWQGSKLEQFSLPDEASQAAI 251
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ +V +K+ RK PY TST+QQDA KL F+ TM+ AQ+L+EG+ +
Sbjct: 252 LTALQGKEARVADVAKKKATRKPAAPYTTSTMQQDAVRKLGFTTDRTMRTAQQLFEGIDV 311
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD + +S++A EIR I + G+ P PR Y K KNAQEAHE
Sbjct: 312 GQG-AVGLITYMRTDSVTLSEDALTEIRHYIENKIGADFLPN-SPRVYKTKSKNAQEAHE 369
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RTMACQM A VDI + VFR
Sbjct: 370 AIRPTSVYRSPESVKPFLSPDQFKLYQMIWQRTMACQMVDAKFDATTVDIHMGEG--VFR 427
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+S + F GF + Y++ +E+D E L + GD L + ++ +QH
Sbjct: 428 ASGQVLVFAGFLSVYQE---------GQDEDDESEDAKKLPEMAAGDVLPVDKLYGEQHF 478
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP R++E +LVK LEE GIGRPSTYAS +K L+DR YV V+ R P G +V+ FL
Sbjct: 479 TQPPPRFNEATLVKALEEFGIGRPSTYASIIKTLKDREYVVVEQRRFQPTDTGDIVNKFL 538
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F + DY FTA +E +LD ++ G W ++ +W F I + E +
Sbjct: 539 TEHFEQYVDYDFTAKLEDQLDEIANGKRAWVPVMDKFWKGFHK--------QIEEKEGIE 590
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
F + D +CP CG+ L K + AG FI C +P C+Y
Sbjct: 591 RAKF------TTQELDETCPKCGQHKLQIKFGK--AGRFIACAGYPECDY 632
>gi|238022607|ref|ZP_04603033.1| hypothetical protein GCWU000324_02516 [Kingella oralis ATCC 51147]
gi|237866047|gb|EEP67181.1| hypothetical protein GCWU000324_02516 [Kingella oralis ATCC 51147]
Length = 774
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 280/652 (42%), Positives = 384/652 (58%), Gaps = 37/652 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES K K I+ YLG YEVL S+GHVRDL ++G+V P+D+F+M +E+P+ +
Sbjct: 2 AKNLLIVESPNKIKSIKKYLGSDYEVLASFGHVRDLIKKNGAVNPEDNFAMKYEIPAKSA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENI--TVARVVFHEIT 466
H+ I A A+ + LA+DPDREGEAI+WHI E+L+ + + NI + RVVFHE+T
Sbjct: 62 KHVDEIVKAAKQADTIYLATDPDREGEAISWHIAEILKSKRGM-ANIGDKLQRVVFHEVT 120
Query: 467 EASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSL 526
++ A+Q R +D NLV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL L
Sbjct: 121 PKGVQEAIQHPRGLDINLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRL 180
Query: 527 ICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAK 586
IC+RE EI F+ QEYW++ +SH T F A LT +Q+ +L Q S+ +
Sbjct: 181 ICERENEIRAFETQEYWSIHM-----DSHKGRT-KFSAKLTQWQNAKLEQFSLPNEASQA 234
Query: 587 DIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
I + +V + K+ RK PY TST+QQDA KL F+ TM+ AQ+L+EG+
Sbjct: 235 AILTALQGKEARVSEVIKKKATRKPAAPYTTSTMQQDAVRKLGFTTDRTMRTAQQLFEGI 294
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ G A GLITYMRTD + +S +A EIR I + G+ + P PR Y K KNAQEA
Sbjct: 295 DVGQG-AVGLITYMRTDSVTLSQDAVTEIRHYIDNKIGADYLPN-SPRVYKTKSKNAQEA 352
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT + R P + L D KLY +IW RT+ACQM A VDI D +
Sbjct: 353 HEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMVEAKFDATTVDIAVGDG--I 410
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ + F GF + Y++ GA +EN++ L + GD L + + +Q
Sbjct: 411 FRATGQVLVFAGFLSVYQE---GADEDDNADENNKK-----LPEMTVGDALPVDNLYGEQ 462
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS +K L+DR YV V+ R P G +V+
Sbjct: 463 HFTQPPPRFNEATLVKALEEYGIGRPSTYASIIKTLKDREYVIVEQRRFLPTDTGEVVNK 522
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL+ +F + DY FTA +E +LD ++ G +W ++ +W F QVE
Sbjct: 523 FLTEHFQQYVDYDFTAKLEDQLDEIAGGKRQWIPVMDTFWQGFHK-----------QVE- 570
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CG L K R AG FI C +P C+Y
Sbjct: 571 --EKEGIERAKFTTEELDETCPKCGNHKLQIKFGR--AGRFIACAGYPECDY 618
>gi|394990083|ref|ZP_10382915.1| DNA topoisomerase I [Sulfuricella denitrificans skB26]
gi|393790348|dbj|GAB72554.1| DNA topoisomerase I [Sulfuricella denitrificans skB26]
Length = 760
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 287/702 (40%), Positives = 407/702 (57%), Gaps = 54/702 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+++VES +KAK ++ YLG +E+L SYGHVRDL + G+V ++DF M +++ H
Sbjct: 4 SLLIVESPSKAKTLKKYLGKDFEILASYGHVRDLVPKQGAVDTENDFKMKYQLIERNAKH 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +I A+ A+N+ LA+DPDREGEAIAWH+ E + + L V RVVFHEIT++++
Sbjct: 64 VDAITKAVKLADNIYLATDPDREGEAIAWHLAE-ILKSKKLLAKKNVKRVVFHEITQSAV 122
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+I LV A ARRALDYL+GFN+SPLLWRK+ SAGRVQS AL LIC+R
Sbjct: 123 LAAIANPRDILMPLVNAQQARRALDYLVGFNLSPLLWRKIRRGLSAGRVQSPALRLICER 182
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EID FK QEYW++ +SH F A L ++ ++LNQ S+G+ + DI
Sbjct: 183 EIEIDAFKTQEYWSIHF-----DSHKGKQ-KFSAKLFQYKGEKLNQFSVGTESAQADIVD 236
Query: 591 KIN---SANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
I+ V++ K+ R+ P+ TSTLQQ+A KL F+ M++AQ+LYEGV
Sbjct: 237 YISQRAGGKATVVQVDKKRKQRQASAPFTTSTLQQEAVRKLGFTTDRAMRVAQQLYEGVD 296
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
G A GLITYMRTD + +++EA EIR I ++ + P+ P Y K KNAQEAH
Sbjct: 297 T-GGGAVGLITYMRTDAVILANEALTEIRDYISAKFDPDYLPK-APVLYKNKSKNAQEAH 354
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT I R P + L D +KLY +IW RT+ACQM PA + +D+ ADE +F
Sbjct: 355 EAIRPTSILRTPDDVRTFLTADQIKLYEMIWKRTLACQMSPAKFDTVSLDLAVADEGTLF 414
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+S + F GF A Y E+E++ E + L ++ GD + + ++ QH
Sbjct: 415 RASGQTLVFPGFIAVY----------LESEDDQEEEGESKLPPMEAGDQIPVDKLYGDQH 464
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RY+E SLVK LEE GIGRPSTYAS + LQ R YV + + +P G +V+ F
Sbjct: 465 FTQPPPRYTEASLVKDLEEHGIGRPSTYASIISTLQAREYVNLDKKRFFPTDVGSVVNKF 524
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L+ +F+ DY FTA +E +LD +S G EW +L D+W FS Q+++
Sbjct: 525 LTEHFTRYVDYDFTAKLEDQLDIISIGEKEWIPVLADFWKGFS-----------QQIDEK 573
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAKTLYGD 1006
D L D +CP CG+ + R G G F+GC+ +P C++ +++ G+
Sbjct: 574 KNIERKDLTHEQL---DEACPKCGKPLSV----RLGKRGKFVGCSAYPECDF-TRSMDGE 625
Query: 1007 DDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
DEP ++ P + +KSG YG ++
Sbjct: 626 ----------VKPDEPVVVEGRLCPKCDSPLHVKSGAYGKFI 657
>gi|387126144|ref|YP_006294749.1| DNA topoisomerase I [Methylophaga sp. JAM1]
gi|386273206|gb|AFI83104.1| DNA topoisomerase I [Methylophaga sp. JAM1]
Length = 760
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 294/704 (41%), Positives = 418/704 (59%), Gaps = 52/704 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
GK +V+VES KAK I+ YLG EVL SYGHVRDL + G+V P +DF+M ++V
Sbjct: 2 GKKLVIVESPAKAKTIKKYLGKDVEVLASYGHVRDLLPKEGAVDPSNDFAMKYQVIDRNS 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+++I A+ A+ L LA+DPDREGEAI+WH+ E+L+++ L + T RVVFHEIT+
Sbjct: 62 KHVEAIAKAMKKADTLYLATDPDREGEAISWHLYELLKKKGVLKDKETF-RVVFHEITKQ 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ RE+ +LV A ARRALDYL+GF +SPLLW+K+ SAGRVQS AL +I
Sbjct: 121 AVNDAVANPRELSMDLVNAQQARRALDYLVGFTLSPLLWKKVRRGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE+EI+ FK QEYWT+EA + + F A LTH+++++L+Q SI +A D+
Sbjct: 181 ERELEIEAFKAQEYWTIEA------DATAEKTPFQAKLTHYKNEKLSQFSIDHTEQADDV 234
Query: 589 EQKINSA--NFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
+ A ++ + ++ ++NP P+ TSTLQQ+A+ KL F A TM +AQ+LYEG
Sbjct: 235 VTTLTKAAEGKLLVTHVEKKQRKRNPAAPFTTSTLQQEASRKLGFGAQRTMSVAQQLYEG 294
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
V +G A GLITYMRTD + ++ EA +EIR I +RYG+ P + P++Y K KNAQE
Sbjct: 295 VDTGEG-AEGLITYMRTDSVTLAAEAIEEIRIFIGQRYGAKSVPGK-PQEYKTKSKNAQE 352
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEAIRPT + R P + L D KLY+LIW RT+A QM AT+ + VD+G +
Sbjct: 353 AHEAIRPTSVLRTPDEMKAYLSVDQHKLYNLIWQRTLASQMIHATLNTVAVDLG-CGKGN 411
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
FR++ S V GF + Y + K++ + D+ E IL ++ G + L + +
Sbjct: 412 TFRANGSTVVNPGFMSVY-------LEGKDDTKGDKDE--NILPPMEVGKVVDLVAIRPE 462
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PP RYSE SLV+ LEE IGRPSTYAS + L R YV + ++ +P GR+V
Sbjct: 463 QHFTEPPPRYSEASLVRSLEEHDIGRPSTYASIISTLLQREYVELITKRFHPTDVGRVVG 522
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
FL +F+ DY FTA +E +LD VS G EW LL ++W F QVE
Sbjct: 523 KFLVQHFTRYVDYDFTAKLEDDLDAVSRGEAEWIPLLRNFWGPFK-----------EQVE 571
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFG-AGYFIGCNQHPRCNYIAKTLY 1004
++ + L ++D CP CG+ SR G +G FIGC +P C+Y
Sbjct: 572 TKDKEVQRSDVTQELLDED--CPKCGKKL----SSRLGRSGRFIGCTGYPECDYTRNI-- 623
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
D EE T EP+++ P + + +++G YG ++
Sbjct: 624 --DGEE------TTASEPEVVEGRKCPKCESDLWVRTGKYGKFI 659
>gi|431930637|ref|YP_007243683.1| DNA topoisomerase I [Thioflavicoccus mobilis 8321]
gi|431828940|gb|AGA90053.1| DNA topoisomerase I, bacterial [Thioflavicoccus mobilis 8321]
Length = 794
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 283/651 (43%), Positives = 389/651 (59%), Gaps = 31/651 (4%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++VVVES KAK I+ YLG +EV+ SYGHVRDL + G+V P F M ++V H
Sbjct: 2 NLVVVESPAKAKTIKKYLGPDFEVVASYGHVRDLVPKEGAVDPAHGFKMQYQVIDRNEKH 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+++I L A+ L LA+DPDREGEAI+WH+ E+L+ + L E V RVVFHEIT+ +I
Sbjct: 62 VQAIAKRLKAADALYLATDPDREGEAISWHLYELLRGRRQLGEK-PVHRVVFHEITKRAI 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A+ R + +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +R
Sbjct: 121 QDAVANPRGLSVDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIVER 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYWT+EA K++ + F A L F +++ Q +I T A ++ +
Sbjct: 181 EQEIEAFVRREYWTIEADA-TKDAAKKNAKPFTAKLVEFAGEKVEQFTITDETRAGEVTR 239
Query: 591 KINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+ A +V ++ R P+ITSTLQQ+AA KL F+A TM++AQ+LYEGV
Sbjct: 240 TLEQAADGKLRVESVERKQRKRLPAPPFITSTLQQEAARKLGFTAQRTMRVAQQLYEGVD 299
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ G + GLI+YMRTD + ++ EA EIR + ERYG H P + PR+Y K KNAQEAH
Sbjct: 300 V-GGESVGLISYMRTDSVSLAQEALAEIRGYVAERYGEDHLPPQ-PRQYKTKAKNAQEAH 357
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT IRR P L G L D L+LY LIW RT+ACQM A + + +++ +A +F
Sbjct: 358 EAIRPTSIRREPTALKGHLSNDQLRLYELIWKRTLACQMAHALINTVAINL-SAGAGNIF 416
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S V GF Y + +++E + +L L GD + L + +QH
Sbjct: 417 RATGSTVAEPGFMRVY-------LEGRDDERGADDDEERMLPPLAEGDLVDLLAIRPEQH 469
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE +LVK LEE GIGRPSTYAS + LQ+R YV ++ + +P GR+V+ F
Sbjct: 470 FTEPPPRYSEATLVKALEEFGIGRPSTYASIISTLQEREYVHLEKKRFHPTDVGRVVNRF 529
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L+ YF+ DY FTA +E ELD VS G EW LL +W F + +++ + +
Sbjct: 530 LTDYFASYVDYDFTAKLEDELDAVSRGEEEWIPLLEQFWRPFKQRIDDTE-VNVKRSDVT 588
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
E+ D CP CG L ++ R G FIGC P C+Y
Sbjct: 589 QERI------------DEPCPKCG-SPLSIRLGRH--GRFIGCTNFPACDY 624
>gi|159464223|ref|XP_001690341.1| DNA topoisomerase-like protein [Chlamydomonas reinhardtii]
gi|158279841|gb|EDP05600.1| DNA topoisomerase-like protein [Chlamydomonas reinhardtii]
Length = 772
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 311/786 (39%), Positives = 432/786 (54%), Gaps = 35/786 (4%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDD------DFSMVWEVPS 405
VVVVES TKAK IQG+LGD Y+VL SYGHVRDL ++GS D+ + W+V
Sbjct: 1 VVVVESPTKAKKIQGFLGDKYKVLASYGHVRDLPPKAGSAAAAGVAGEEEDWYLDWQVLD 60
Query: 406 AAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEI 465
A + I A +GA L+LA+DPDREGEAI+WHI + L+++ L + V R+ F EI
Sbjct: 61 VARPRMAEIAGAATGAPLLVLATDPDREGEAISWHISQELEKRGVLRKVGGVQRITFTEI 120
Query: 466 TEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALS 525
T++++ AL A R++ LV AY ARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL
Sbjct: 121 TKSAVTNALAAGRQVSQPLVDAYRARRALDYLVGFQLSPVLWRKLPGARSAGRVQSVALR 180
Query: 526 LICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFS----------FPAHLTHFQSKRLN 575
L+C+RE I+ F P YW++ A+L + + + LTH +RL
Sbjct: 181 LVCEREAAIEAFNPLAYWSIAAMLAPPSRGAAAAAAAAAAGPTAALIRSRLTHADGRRLG 240
Query: 576 QLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYT 635
+ I S EA+++ ++I S V + R R P+ TSTLQQ+A+ +L FSA T
Sbjct: 241 GMDIRSQAEAEELARRIQSGPVTVARVVVRQQQRHPGAPFTTSTLQQEASRRLGFSAART 300
Query: 636 MKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRK 695
M++AQ+LYEG + T GLITYMRTDG+ IS EA E+R+ +G P + PR
Sbjct: 301 MRVAQQLYEGAGV--CTGEGLITYMRTDGVSISAEAVAELRAANAAMFGRGCVPPQ-PRW 357
Query: 696 YFKKVKNAQEAHEAIRPTDIRRL-PAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQI 754
Y + KNAQEAHEAIRPT + P+ L LD D LY LIW R +A QM A +
Sbjct: 358 YKSRAKNAQEAHEAIRPTRPAAVTPSSLPAALDPDQAALYDLIWRRAVASQMTSAAYDVV 417
Query: 755 QVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTG 814
V+ + R+S + G+ AY D + E + +
Sbjct: 418 SVEFEADGGRLGLRASGRVLRDPGYLRAYNDDEPAEGEEPAPEAEAAGGGEDEGAAAREN 477
Query: 815 DPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRI 874
L ++ QH T+PP R++E SLV+ LEE GIGRPSTYA + +LQDR YV + R
Sbjct: 478 QGLAAQQLLALQHATRPPPRFTEASLVRALEERGIGRPSTYAPIMTLLQDRGYVCREGRA 537
Query: 875 LYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCT 934
L P GR++++FL HYF+ DY FT+DME LD+V++G W+ +L +W F +
Sbjct: 538 LLPTSLGRVLTSFLEHYFATWVDYDFTSDMEGRLDDVASGKAAWRRVLSAFWGPFQAAVG 597
Query: 935 CAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGC---- 990
++ Q + + R CP CG G L+ K SR+G FIGC
Sbjct: 598 SMAAIRTTQPPGAPGA----AAGPAPQRDPRRCPKCGVGRLVLKPSRYGG--FIGCSNFA 651
Query: 991 NQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE 1050
++ +C++ A+ L + + N E +L+G HP + + V ++ GPYG YVQ G+
Sbjct: 652 DEALQCDF-ARPLLPSEGADGGSCVPFNATE-RLLGSHPDTGQPVYVRLGPYGLYVQAGD 709
Query: 1051 DRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHR 1110
K+ + I+ S+TLE AL LL P LG HP DGQP++ G V H
Sbjct: 710 APKKEPKKKKTGFTIQ---SVTLEAALALLALPRTLGLHPGDGQPVVANTGPFGPYVAHD 766
Query: 1111 RTIASV 1116
AS+
Sbjct: 767 GVSASL 772
>gi|54295436|ref|YP_127851.1| DNA topoisomerase I [Legionella pneumophila str. Lens]
gi|53755268|emb|CAH16762.1| DNA topoisomerase I [Legionella pneumophila str. Lens]
Length = 759
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 295/703 (41%), Positives = 416/703 (59%), Gaps = 51/703 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK IQ YLG+ Y+VL SYGHVRDL AR GSV P+ FSM +
Sbjct: 3 KHLVIVESPAKAKTIQKYLGNDYDVLASYGHVRDLPARKGSVNPEKHFSMTYVPIEKNAR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I L +++L+LA+DPDREGEAI+WHI E++++++ L + +V R+ F+EIT+A+
Sbjct: 63 HIDTIAKTLKKSDSLLLATDPDREGEAISWHIFELMKERNLLKDK-SVHRIFFNEITKAA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A+ R I +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +
Sbjct: 122 IQDAINHPRSISMDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F QEYW + A K +H+ + F A LTH+ ++L Q S+ +A +I+
Sbjct: 182 REEEIERFIAQEYWKIIA----KCAHA--STEFEARLTHYNEEKLQQFSVTQQEQAHEIK 235
Query: 590 QKINS---ANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+++ + V + K+ RK P+ITSTLQQ+AA KL F+A TM +AQ+LYEG+
Sbjct: 236 KQLIAQAQGFLTVAQIDKKQRKRKPSPPFITSTLQQEAARKLGFTARKTMMVAQQLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ GT GLITYMRTD ++++ EA EIR I +RY + P PR Y K KNAQEA
Sbjct: 296 DIGTGTV-GLITYMRTDSVNLAKEAIDEIRDYITQRYKGDNCPN-SPRIYKTKSKNAQEA 353
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT I+R P M+ G L D LKLYSLIW RT+A QM A + + VD + +
Sbjct: 354 HEAIRPTSIKRTPEMVQGSLTSDQLKLYSLIWKRTVASQMADAILDTVSVDF-SCGKGNT 412
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ S + F GF + YE+ G K+ + D+ IL + G+ + + ++E Q
Sbjct: 413 FRANGSTIAFPGFLSVYEE---GRDDSKDEDNEDK-----ILPAFNVGEKIKVSDIETNQ 464
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RYSE +LVK LEE IGRPSTYAS + LQ R YV V+ + P GR+V+
Sbjct: 465 HFTEPPPRYSEATLVKALEEYDIGRPSTYASIIHTLQQREYVVVEKKRFLPTDVGRIVNR 524
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL++YF+ DY FTA +E LD ++ G +W +L ++W F + Q++
Sbjct: 525 FLTNYFTRYVDYQFTAGLEDTLDAIARGEKDWIPVLEEFWQPF-----------VQQIQN 573
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAKTLYG 1005
+ E+ + L D CP C + I R G G FIGC +P C+Y
Sbjct: 574 IDEQVQRKDVTTEL--LDEKCPKCQKPLSI----RLGKRGRFIGCTGYPDCDYT------ 621
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
+D EP+++ P + +K+G YG ++
Sbjct: 622 ----QDISNPEGEKSEPEVVEGRSCPLCHGALHIKTGRYGKFI 660
>gi|52842805|ref|YP_096604.1| DNA topoisomerase I [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|378778494|ref|YP_005186933.1| DNA topoisomerase I [Legionella pneumophila subsp. pneumophila ATCC
43290]
gi|52629916|gb|AAU28657.1| DNA topoisomerase I [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|364509310|gb|AEW52834.1| DNA topoisomerase I [Legionella pneumophila subsp. pneumophila ATCC
43290]
Length = 759
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 295/703 (41%), Positives = 416/703 (59%), Gaps = 51/703 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK IQ YLG+ Y+VL SYGHVRDL AR GSV P+ FSM +
Sbjct: 3 KHLVIVESPAKAKTIQKYLGNDYDVLASYGHVRDLPARKGSVNPEKHFSMTYVPIEKNAR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I L +++L+LA+DPDREGEAI+WHI E++++++ L + +V R+ F+EIT+A+
Sbjct: 63 HIDTIAKTLKKSDSLLLATDPDREGEAISWHIFELMKERNLLKDK-SVHRIFFNEITKAA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A+ R I +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +
Sbjct: 122 IQDAINHPRSISMDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F QEYW + A K +H+ + F A LTH+ ++L Q S+ +A +I+
Sbjct: 182 REEEIERFIAQEYWKIIA----KCAHA--STEFEARLTHYNEEKLQQFSVTQQEQAHEIK 235
Query: 590 QKINS---ANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+++ + V + K+ RK P+ITSTLQQ+AA KL F+A TM +AQ+LYEG+
Sbjct: 236 KQLIAQAQGFLTVAQIDKKQRKRKPSPPFITSTLQQEAARKLGFTARKTMMVAQQLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ GT GLITYMRTD ++++ EA EIR I +RY + P PR Y K KNAQEA
Sbjct: 296 DIGTGTV-GLITYMRTDSVNLAKEAIDEIRDYITQRYKGDNCPN-SPRIYKTKSKNAQEA 353
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT I+R P M+ G L D LKLYSLIW RT+A QM A + + VD + +
Sbjct: 354 HEAIRPTSIKRTPEMVQGSLTSDQLKLYSLIWKRTVASQMADAILDTVSVDF-SCGKGNT 412
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ S + F GF + YE+ G K+ + D+ IL + G+ + + ++E Q
Sbjct: 413 FRANGSTIAFPGFLSVYEE---GRDDSKDEDNEDK-----ILPAFNVGEKIKVSDIETNQ 464
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RYSE +LVK LEE IGRPSTYAS + LQ R YV V+ + P GR+V+
Sbjct: 465 HFTEPPPRYSEATLVKALEEYDIGRPSTYASIIHTLQQREYVVVEKKRFLPTDVGRIVNR 524
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL++YF+ DY FTA +E LD ++ G +W +L ++W F + Q++
Sbjct: 525 FLTNYFTRYVDYQFTAGLEDTLDAIARGEKDWIPVLEEFWQPF-----------VQQIQN 573
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAKTLYG 1005
+ E+ + L D CP C + I R G G FIGC +P C+Y
Sbjct: 574 IDEQVQRKDVTTEL--LDEKCPKCQKPLSI----RLGKRGRFIGCTGYPDCDYT------ 621
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
+D EP+++ P + +K+G YG ++
Sbjct: 622 ----QDISNPEGEKSEPEVVEGRSCPLCHGALHIKTGRYGKFI 660
>gi|397665189|ref|YP_006506727.1| DNA topoisomerase I [Legionella pneumophila subsp. pneumophila]
gi|395128600|emb|CCD06818.1| DNA topoisomerase I [Legionella pneumophila subsp. pneumophila]
Length = 759
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 295/703 (41%), Positives = 416/703 (59%), Gaps = 51/703 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK IQ YLG+ Y+VL SYGHVRDL AR GSV P+ FSM +
Sbjct: 3 KHLVIVESPAKAKTIQKYLGNDYDVLASYGHVRDLPARKGSVNPEKHFSMTYVPIEKNAR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I L +++L+LA+DPDREGEAI+WHI E++++++ L + +V R+ F+EIT+A+
Sbjct: 63 HIDTIAKTLKKSDSLLLATDPDREGEAISWHIFELMKERNLLKDK-SVHRIFFNEITKAA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A+ R I +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +
Sbjct: 122 IQDAINHPRSISMDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F QEYW + A K +H+ + F A LTH+ ++L Q S+ +A +I+
Sbjct: 182 REEEIERFIAQEYWKIIA----KCAHA--STEFEARLTHYNEEKLQQFSVTQQEQAHEIK 235
Query: 590 QKINS---ANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+++ + V + K+ RK P+ITSTLQQ+AA KL F+A TM +AQ+LYEG+
Sbjct: 236 KQLIAQAQGFLTVAQIDKKQRKRKPSPPFITSTLQQEAARKLGFTARKTMMVAQQLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ GT GLITYMRTD ++++ EA EIR I +RY + P PR Y K KNAQEA
Sbjct: 296 DIGTGTV-GLITYMRTDSVNLAKEAIDEIRDYITQRYKGDNCPN-SPRIYKTKSKNAQEA 353
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT I+R P M+ G L D LKLYSLIW RT+A QM A + + VD + +
Sbjct: 354 HEAIRPTSIKRTPEMVQGSLTSDQLKLYSLIWKRTVASQMADAILDTVSVDF-SCGKGNT 412
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ S + F GF + YE+ G K+ + D+ IL + G+ + + ++E Q
Sbjct: 413 FRANGSTIAFPGFLSVYEE---GRDDSKDEDNEDK-----ILPAFNVGEKIKVSDIETNQ 464
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RYSE +LVK LEE IGRPSTYAS + LQ R YV V+ + P GR+V+
Sbjct: 465 HFTEPPPRYSEATLVKALEEYDIGRPSTYASIIHTLQQREYVVVEKKRFLPTDVGRIVNR 524
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL++YF+ DY FTA +E LD ++ G +W +L ++W F + Q++
Sbjct: 525 FLTNYFTRYVDYQFTAGLEDTLDAIARGEKDWIPVLEEFWQPF-----------VQQIQN 573
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAKTLYG 1005
+ E+ + L D CP C + I R G G FIGC +P C+Y
Sbjct: 574 IDEQVQRKDVTTEL--LDEKCPKCQKPLSI----RLGKRGRFIGCTGYPDCDYT------ 621
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
+D EP+++ P + +K+G YG ++
Sbjct: 622 ----QDISNPEGEKSEPEVVEGRSCPLCHGALHIKTGRYGKFI 660
>gi|225025548|ref|ZP_03714740.1| hypothetical protein EIKCOROL_02448 [Eikenella corrodens ATCC
23834]
gi|224941694|gb|EEG22903.1| hypothetical protein EIKCOROL_02448 [Eikenella corrodens ATCC
23834]
Length = 766
Score = 501 bits (1290), Expect = e-138, Method: Compositional matrix adjust.
Identities = 275/650 (42%), Positives = 385/650 (59%), Gaps = 36/650 (5%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++++VES K K I+ YLG +EVL S+GHVRDL ++G+V P+ DF+M +EVP+ +
Sbjct: 3 KNLLIVESPNKIKSIKKYLGSDFEVLASFGHVRDLVPKNGAVDPEHDFAMKYEVPAKSKK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHE-NITVARVVFHEITEA 468
H+ +I A A+ L LA+DPDREGEAI+WHI E+L+ + + + RVVFHE+T+
Sbjct: 63 HIDAIVAAAKEADTLYLATDPDREGEAISWHIYEILKTKRGIKNLDERTLRVVFHEVTKK 122
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ AL+ R++D LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 123 GVQEALKQPRKLDMGLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 182
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYW+V LD + F A LT +Q +L Q S+ + +
Sbjct: 183 ERENEIRAFETQEYWSVH--LDSHKGRQ----KFAAKLTQWQGSKLEQFSLLNEAAQAAV 236
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ QV+ K+ RK PY TST+QQDA KL F+ TM+ AQ+L+EGV +
Sbjct: 237 LAAMQGKPAQVLDVVKKKATRKPAAPYTTSTMQQDAVRKLGFTTDRTMRTAQQLFEGVDV 296
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G+ GLITYMRTD + +S +A EIR I + G+ P+ PR Y K KNAQEAHE
Sbjct: 297 GQGSV-GLITYMRTDSVTLSQDAIAEIRHYIDNKIGADFLPK-SPRMYRTKSKNAQEAHE 354
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RTMACQM A VDIG + VFR
Sbjct: 355 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTMACQMVEAKFDATTVDIGVGEG--VFR 412
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ + F GF + Y++ ++N++ L L GD L + ++ +QH
Sbjct: 413 ATGQVLVFAGFLSVYQEGHDEDDEDEDNKK---------LPELAVGDALPVDKLYGEQHF 463
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP R++E +LVK LEE GIGRPSTYAS +K L+DR YVT+ R P G +V+ FL
Sbjct: 464 TQPPPRFNEATLVKALEEFGIGRPSTYASIIKTLKDREYVTIDQRRFLPTDTGEIVNKFL 523
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD++++G +W ++ +W F Q+E
Sbjct: 524 TEHFTQYVDYDFTAKLEDQLDDIASGKRQWIPVMDKFWKGFHK-----------QIE--- 569
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CG+ L K + G FI C+ +P C+Y
Sbjct: 570 EKAGIERAKITTEELDETCPKCGQHKLQIKFGK--RGRFIACSGYPDCDY 617
Score = 43.9 bits (102), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 920 GLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKV 979
G LV RF + CA +E LEK + +CP CG+G+LI +
Sbjct: 648 GQLVYKKGRFGKFIGCANYPKCKHIEP-LEKPKDTGV---------ACPKCGKGSLIERK 697
Query: 980 SRFGAGYFIGCNQHPRCNY 998
SR+G F CN +P C+Y
Sbjct: 698 SRYGK-LFYSCNTYPDCDY 715
>gi|220933378|ref|YP_002512277.1| DNA topoisomerase I [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219994688|gb|ACL71290.1| DNA topoisomerase [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 823
Score = 501 bits (1289), Expect = e-138, Method: Compositional matrix adjust.
Identities = 320/803 (39%), Positives = 445/803 (55%), Gaps = 48/803 (5%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK I+ YLG +EV+ SYGHVRDL + G+V PD F M ++V
Sbjct: 3 KHLVIVESPAKAKTIKKYLGPDFEVMASYGHVRDLVPKEGAVDPDHGFRMNYQVIDRNER 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H++SI AL A++L+LA+DPDREGEAI+WH+ E+L+++ L TV RVVF+EIT+ +
Sbjct: 63 HVESIVKALRKADSLLLATDPDREGEAISWHLYELLRERGVLDAK-TVQRVVFYEITQRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A++ R + +L+ A ARRALDYL+GF +SPLLW+K+ SAGRVQS AL +I +
Sbjct: 122 VKEAIEQPRGLSFDLINAQQARRALDYLVGFKLSPLLWKKIKRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F+ +EYWT+EA LDK +F A L K+L+Q I A
Sbjct: 182 REEEIERFQTREYWTLEADLDKSGQ------AFNAKLHTLDGKKLDQFDIADEVTASAAR 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ SA +V + K+ R P+ TSTLQQ+A KL FSA+ M++AQ+LYEG+
Sbjct: 236 NTLLSAADGRLRVARIEKKQRRRNPAPPFTTSTLQQEAVRKLGFSASRAMRVAQQLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L G GLITYMRTD + ++ EA EIR LI +RYG + PE PR+Y K KNAQEA
Sbjct: 296 DLGAG-PIGLITYMRTDSVTLAGEAIAEIRRLIEQRYGRNTLPEH-PRQYKTKAKNAQEA 353
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT + R P + L D KLY LIW RT+ACQMQ AT+ + D+ E +
Sbjct: 354 HEAVRPTSVMRAPEEVKRHLTTDQFKLYDLIWKRTVACQMQHATLDTVSADLAAGSERHL 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S S V GF A Y++ A EE+D IL L+ GD + L + +Q
Sbjct: 414 FRASGSSVRDPGFMAVYQEGKDDA-----KEESDER----ILPPLEEGDIVKLEALRAEQ 464
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RY+E SLVK LEE GIGRPSTYAS + LQ R YV + SR P GR+V+A
Sbjct: 465 HFTEPPPRYTEASLVKALEEYGIGRPSTYASIISTLQQREYVEMDSRRFIPTDIGRIVNA 524
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL+ +F++ DY FTA +E ELD +S G EW ++ +WS F ++ + + E
Sbjct: 525 FLTQHFTQYVDYDFTARLEDELDEISRGEKEWVPVMEGFWSSFKEQIEEKEAT-VTRAEA 583
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ + G P R V ++ R+G IG A G
Sbjct: 584 VQSRELGID-----PKSGRPVSV--------RMGRYGPVVQIGTKDDEEKPRFAGLPPGK 630
Query: 1007 DDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+ TL+ + + P+ +G P E V + G +G YV+ G + AS+
Sbjct: 631 KMDAVTLEEALELFKLPRELGETPEG-EPVSVNIGRFGPYVKFGS-------RYASLKPE 682
Query: 1066 KDVDSITLEDALELL--RYPVNLGNHPK--DGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
D SI L ALEL+ + + + + D + + R G + A +PK+
Sbjct: 683 DDPFSIELPRALELVAEKKEADANKYIRVFDEAGVQVVNGRYGPYITDGNKNARIPKDRD 742
Query: 1122 PNDVTLEKALEFLSGKDVRRCGR 1144
P +TLE+ L+ R+ R
Sbjct: 743 PKSLTLEECQALLAAAPERKGRR 765
>gi|390951445|ref|YP_006415204.1| DNA topoisomerase I [Thiocystis violascens DSM 198]
gi|390428014|gb|AFL75079.1| DNA topoisomerase I, bacterial [Thiocystis violascens DSM 198]
Length = 767
Score = 500 bits (1288), Expect = e-138, Method: Compositional matrix adjust.
Identities = 297/701 (42%), Positives = 420/701 (59%), Gaps = 48/701 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG +EV+ SYGHVRDL + G+V + F+M +++ H
Sbjct: 2 NLVIVESPAKAKTIEKYLGPDFEVIASYGHVRDLVPKEGAVDTANGFAMKYQIIDRNEKH 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+++I L GA L LA+DPDREGEAI+WH+ E+L+ + L + V RVVF+EIT+ ++
Sbjct: 62 VQAIAKKLKGATALYLATDPDREGEAISWHLYELLKGRKQLGDR-PVHRVVFNEITKRAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A+ RE+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC+R
Sbjct: 121 QEAVANPRELSYDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLICER 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F QEYWT+EA K D SF A LT F +++ Q +I T A ++ Q
Sbjct: 181 ENEIEAFVQQEYWTIEADAAK------DAKSFSAKLTTFGGEKVEQFTIAGETRATEVRQ 234
Query: 591 KI-NSANFQV-IKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+ +AN ++ ++ +R +++P P +ITSTLQQ+AA KL F+ TM++AQ+LYEGV
Sbjct: 235 TLEQAANGKLKVEQVERKQRKRHPAPPFITSTLQQEAARKLGFTTLRTMRVAQQLYEGVD 294
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ G A GLI+YMRTD ++++ EA +EIR + ERYG+ P++ PR + K KNAQEAH
Sbjct: 295 V-GGGAVGLISYMRTDSVNLAQEAVEEIRVYVTERYGAADLPDQ-PRLFKTKAKNAQEAH 352
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT I R P ++ L + +LY LIW RT+ACQM A + Q+ VD+ +A +
Sbjct: 353 EAIRPTSILREPTVVKAHLTPEQFRLYELIWKRTLACQMAHALINQVAVDL-SAGAGNLL 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S + GF Y + A ++EE +L ++TGD + L + +QH
Sbjct: 412 RATGSIIAEPGFMRVYLEGRDDAKSADDDEER-------MLPEMQTGDLVDLLAIRPEQH 464
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RYSE SLVK+LEE GIGRPSTYAS + LQDR YV + + P GR+V+ F
Sbjct: 465 FTEPPPRYSEASLVKELEEFGIGRPSTYASIISTLQDREYVILDKKRFSPTDVGRVVNKF 524
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L+ YF+ DY FTA +E ELD VS G EW LL ++W F Q ++ + +
Sbjct: 525 LTEYFTAYVDYDFTARLEDELDAVSRGEEEWVPLLENFWKPFKELVDNTQE-NVKRSDVT 583
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
EK D CP CG G L ++ R G FIGC Q+P C+Y + L D
Sbjct: 584 QEKL------------DELCPKCG-GPLSIRLGR--NGRFIGCTQYPDCDY-TRDLNADK 627
Query: 1008 DEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
E + P+++ P + +K G YG ++
Sbjct: 628 AEAEA---------PEIVEGRTCPECDAPLEIKRGRYGKFI 659
>gi|449509141|ref|XP_004163506.1| PREDICTED: DNA topoisomerase 1-like [Cucumis sativus]
Length = 415
Score = 500 bits (1288), Expect = e-138, Method: Compositional matrix adjust.
Identities = 235/374 (62%), Positives = 304/374 (81%), Gaps = 7/374 (1%)
Query: 785 DVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKL 844
D + A++++ +EE+ + E F ILN+LK GD L L VELKQH TQPP RYSEG+LVK++
Sbjct: 41 DPEVHAVKHENHEESGQDELFRILNALKPGDQLSLLAVELKQHFTQPPPRYSEGTLVKRM 100
Query: 845 EELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADM 904
EELGIGRPSTYA+T+KVLQDRNYV+VKS +L+PEFRGR+VSAFL H+FSEV++ S TAD+
Sbjct: 101 EELGIGRPSTYATTIKVLQDRNYVSVKSCVLHPEFRGRIVSAFLCHHFSEVSNCSSTADI 160
Query: 905 ETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKD 964
E +LDNVSAGLTEWKG L D W++ SSYC A +++++QVEKMLEK +GD LF+ LP+
Sbjct: 161 ENKLDNVSAGLTEWKGFLRDCWTQISSYCKRANNVNVNQVEKMLEKKYGDFLFSFLPDNS 220
Query: 965 RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVD---- 1020
R+CP C +GTL FKVSRFG GY+IGC+QHP C Y+AKTL+G+D+++D + + +D
Sbjct: 221 RACPSCPDGTLCFKVSRFGVGYYIGCDQHPSCKYVAKTLFGEDEDKD--KDPSEIDNGGV 278
Query: 1021 EPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL 1080
EPK++G HP KEKVLLK+GP+G Y+QLGEDR GY+PKRASV IKDV+SITL+ A++ L
Sbjct: 279 EPKVLGLHPVLKEKVLLKTGPFGCYIQLGEDRKGYMPKRASVFEIKDVNSITLDFAIDRL 338
Query: 1081 RYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKDVR 1140
RYP+ LG HPKDGQP+++++AR GF++RH RTIAS+PKN+KPN+V L KAL+ LS VR
Sbjct: 339 RYPITLGKHPKDGQPVIIKIARTGFTIRHGRTIASIPKNLKPNNVDLAKALKLLSSSGVR 398
Query: 1141 RCGRPKG-KPKREE 1153
R GRPKG PK E+
Sbjct: 399 RVGRPKGLLPKVED 412
>gi|381157111|ref|ZP_09866345.1| DNA topoisomerase I, bacterial [Thiorhodovibrio sp. 970]
gi|380880974|gb|EIC23064.1| DNA topoisomerase I, bacterial [Thiorhodovibrio sp. 970]
Length = 806
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 291/705 (41%), Positives = 422/705 (59%), Gaps = 45/705 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG +EVL SYGHVRDL + G+V + F M ++V H
Sbjct: 12 NLVIVESPAKAKTIEKYLGKEFEVLASYGHVRDLVPKEGAVDTEHGFEMKYQVIERNEKH 71
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+++I L A+ L LA+DPDREGEAI+WH+ E+L+++ + + V RVVF+EIT+ ++
Sbjct: 72 VQAIAKKLKNADALYLATDPDREGEAISWHLYELLKKRRQIGKR-PVYRVVFNEITKNAV 130
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A+ RE+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC+R
Sbjct: 131 QDAVANPRELSVDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLICER 190
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW+V+A + K ++ + + F A L +++ Q SI + +A D E+
Sbjct: 191 ENEIEAFVSREYWSVDADVAKPDA-AKEHKPFSAKLVELGGEKVEQFSIVNGEQAADAEK 249
Query: 591 KI-NSANFQV-IKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+I ++A ++ + +R ++NP P +ITSTLQQ+AA KL F+A TM++AQ+LYEGV
Sbjct: 250 RIADAAQGKLHVDQVERKQRKRNPAPPFITSTLQQEAARKLGFTAQRTMRVAQQLYEGVD 309
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
L G A GLITYMRTD ++++ EA EIR+ + ERY S H P++ R + K KNAQEAH
Sbjct: 310 L-GGEAVGLITYMRTDSVNLAQEALDEIRAYVTERYDSRHLPDK-VRLFKTKSKNAQEAH 367
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG----NADE 763
EA+RPT I R P + L + +LY L+W RT+ACQM A + Q+ + + +A E
Sbjct: 368 EAVRPTSIFREPKAVRAHLSSEQFRLYELVWKRTLACQMAHALINQVAIVLSAGGPDAPE 427
Query: 764 SIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVE 823
I FR++ S V GF Y + + + +++EE +L +L+ G+ + L +
Sbjct: 428 GIRFRATGSTVAEPGFMRVYLEGRDDSKQAEDDEER-------MLPALEEGELVDLLAIR 480
Query: 824 LKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRM 883
+QH T+PP RYSE SLVK LEE GIGRPSTYAS + LQDR YVT+ ++ P GR+
Sbjct: 481 PEQHFTEPPPRYSEASLVKALEEFGIGRPSTYASIISTLQDREYVTLDNKRFMPSDVGRV 540
Query: 884 VSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQ 943
V+ FL+ +F+ DY FTA +E LD VS G +W +L +W F Q ++ +
Sbjct: 541 VNKFLTAHFTSYVDYDFTARLEDSLDAVSRGEGDWIPVLEQFWKAFKERVDYTQE-NVQR 599
Query: 944 VEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
E E D CP CG G L ++ R G FIGC +P C+Y + L
Sbjct: 600 SEVTQEAI------------DEKCPECG-GQLSKRLGR--NGLFIGCTNYPECSY-TRDL 643
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
+ D D EP+++ P + +K G YG ++
Sbjct: 644 HQDGD--------AAAKEPEIVEGRTCPDCGSPLEIKRGRYGKFI 680
>gi|397668272|ref|YP_006509809.1| DNA topoisomerase I [Legionella pneumophila subsp. pneumophila]
gi|395131683|emb|CCD09976.1| DNA topoisomerase I [Legionella pneumophila subsp. pneumophila]
Length = 759
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 294/703 (41%), Positives = 416/703 (59%), Gaps = 51/703 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK IQ YLG+ Y+VL SYGHVRDL AR GSV P+ FSM +
Sbjct: 3 KHLVIVESPAKAKTIQKYLGNDYDVLASYGHVRDLPARKGSVNPEKHFSMTYVPIEKNAR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I L +++L+LA+DPDREGEAI+WHI E++++++ L + +V R+ F+EIT+A+
Sbjct: 63 HIDTIAKTLKKSDSLLLATDPDREGEAISWHIFELMKERNLLKDK-SVHRIFFNEITKAA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A+ R I +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +
Sbjct: 122 IQDAINHPRSISMDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F QEYW + A K +H+ + F A LTH+ ++L Q S+ +A +I+
Sbjct: 182 REEEIERFIAQEYWKIIA----KCAHA--STEFEARLTHYNEEKLQQFSVTQQEQAHEIK 235
Query: 590 QKINS---ANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+++ + V + K+ RK P+ITSTLQQ+AA KL F+A TM +AQ+LYEG+
Sbjct: 236 KQLIAQAQGFLTVAQIDKKQRKRKPSPPFITSTLQQEAARKLGFTARKTMMVAQQLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ GT GLITYMRTD ++++ EA EIR I +RY + P PR Y K KNAQEA
Sbjct: 296 DIGTGTV-GLITYMRTDSVNLAKEAIDEIRDYITQRYKGDNCPN-SPRIYKTKSKNAQEA 353
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT I+R P M+ G L D LKLYSLIW RT+A QM A + + VD + +
Sbjct: 354 HEAIRPTSIKRTPEMVQGSLTSDQLKLYSLIWKRTVASQMADAILDTVSVDF-SCGKGNT 412
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ S + F GF + YE+ G K+ + D+ IL + G+ + + ++E Q
Sbjct: 413 FRANGSTIAFPGFLSVYEE---GRDDSKDEDNEDK-----ILPAFNVGEKIKVSDIETNQ 464
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RYSE +LVK LEE IGRPSTYAS + LQ R YV V+ + P GR+V+
Sbjct: 465 HFTEPPPRYSEATLVKALEEYDIGRPSTYASIIHTLQQREYVVVEKKRFLPTDVGRIVNR 524
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL++YF+ DY FTA +E LD ++ G +W +L ++W F + Q++
Sbjct: 525 FLTNYFTRYVDYQFTAGLEDTLDAIARGEKDWIPVLEEFWQPF-----------VQQIQN 573
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAKTLYG 1005
+ E+ + L + CP C + I R G G FIGC +P C+Y
Sbjct: 574 IDEQVQRKDVTTEL--LEEKCPKCQKPLSI----RLGKRGRFIGCTGYPDCDYT------ 621
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
+D EP+++ P + +K+G YG ++
Sbjct: 622 ----QDISNPEGEKSEPEVVEGRSCPLCHGALHIKTGRYGKFI 660
>gi|54298588|ref|YP_124957.1| DNA topoisomerase I [Legionella pneumophila str. Paris]
gi|148358667|ref|YP_001249874.1| DNA topoisomerase I [Legionella pneumophila str. Corby]
gi|53752373|emb|CAH13805.1| DNA topoisomerase I [Legionella pneumophila str. Paris]
gi|148280440|gb|ABQ54528.1| DNA topoisomerase I [Legionella pneumophila str. Corby]
Length = 759
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 294/703 (41%), Positives = 416/703 (59%), Gaps = 51/703 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK IQ YLG+ Y+VL SYGHVRDL AR GSV P+ FSM +
Sbjct: 3 KHLVIVESPAKAKTIQKYLGNDYDVLASYGHVRDLPARKGSVNPEKHFSMTYVPIEKNAR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I L +++L+LA+DPDREGEAI+WHI E++++++ L + +V R+ F+EIT+A+
Sbjct: 63 HIDTIAKTLKKSDSLLLATDPDREGEAISWHIFELMKERNLLKDK-SVHRIFFNEITKAA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A+ R I +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +
Sbjct: 122 IQDAINHPRSISMDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F QEYW + A K +H+ + F A LTH+ ++L Q S+ +A +I+
Sbjct: 182 REEEIERFIAQEYWKIIA----KCAHA--STEFEARLTHYNEEKLQQFSVTQQEQAHEIK 235
Query: 590 QKINS---ANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+++ + V + K+ RK P+ITSTLQQ+AA KL F+A TM +AQ+LYEG+
Sbjct: 236 KQLIAQAQGFLTVAQIDKKQRKRKPSPPFITSTLQQEAARKLGFTARKTMMVAQQLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ GT GLITYMRTD ++++ EA EIR I +RY + P PR Y K KNAQEA
Sbjct: 296 DIGTGTV-GLITYMRTDSVNLAKEAIDEIRDYITQRYKGDNCPN-SPRIYKTKSKNAQEA 353
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT I+R P M+ G L D LKLYSLIW RT+A QM A + + VD + +
Sbjct: 354 HEAIRPTSIKRTPEMVQGSLTSDQLKLYSLIWKRTVASQMADAILDTVSVDF-SCGKGNT 412
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ S + F GF + YE+ G K+ + D+ IL + G+ + + ++E Q
Sbjct: 413 FRANGSTIAFPGFLSVYEE---GRDDSKDEDNEDK-----ILPAFNVGEKIKVSDIETNQ 464
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RYSE +LVK LEE IGRPSTYAS + LQ R YV V+ + P GR+V+
Sbjct: 465 HFTEPPPRYSEATLVKALEEYDIGRPSTYASIIHTLQQREYVVVEKKRFLPTDVGRIVNR 524
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL++YF+ DY FTA +E LD ++ G +W +L ++W F + Q++
Sbjct: 525 FLTNYFTRYVDYQFTAGLEDTLDAIARGEKDWIPVLEEFWQPF-----------VQQIQN 573
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAKTLYG 1005
+ E+ + L + CP C + I R G G FIGC +P C+Y
Sbjct: 574 IDEQVQRKDVTTEL--LEEKCPKCQKPLSI----RLGKRGRFIGCTGYPDCDYT------ 621
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
+D EP+++ P + +K+G YG ++
Sbjct: 622 ----QDISNPEGEKSEPEVVEGRSCPLCHGALHIKTGRYGKFI 660
>gi|350552421|ref|ZP_08921623.1| DNA topoisomerase I [Thiorhodospira sibirica ATCC 700588]
gi|349794363|gb|EGZ48180.1| DNA topoisomerase I [Thiorhodospira sibirica ATCC 700588]
Length = 847
Score = 498 bits (1281), Expect = e-137, Method: Compositional matrix adjust.
Identities = 309/811 (38%), Positives = 445/811 (54%), Gaps = 52/811 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK I+ YLG +EV+ SYGHVRDL + G+V PD F M +++
Sbjct: 3 KHLVIVESPAKAKTIKKYLGPDFEVMASYGHVRDLIPKEGAVDPDHGFRMHYQLIERNAR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ I AL A+ L+LA+DPDREGEAI+WH+ E+L ++ L + V RVVFHEIT+ +
Sbjct: 63 HVDGIARALRNADTLVLATDPDREGEAISWHLYELLNERGLLTDK-PVVRVVFHEITQKA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
++ A+ R++ +L+ A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL +I +
Sbjct: 122 VREAIAKPRDLSIDLINAQQARRALDYLVGFNLSPLLWKKIKRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE I+ F +EYW V L ++ T F A L F ++ + I + ++A +
Sbjct: 182 REEAIERFVSREYWHVTGQLTQQ------TQPFTARLAVFAGRKHDPFDIPNESQAHAVR 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+++A V + K+ R P+ TSTLQQ+A KL FSA+ M++AQ+LYEG+
Sbjct: 236 DTLHAAAQGQLHVAQIEKKQRRRNPAPPFTTSTLQQEAVRKLGFSASRAMRVAQQLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L G A GLITYMRTD + ++ +A E+R I +RYG +H P + P +Y K KNAQEA
Sbjct: 296 DLGSG-ATGLITYMRTDSVTLAADAITELREFIAQRYGKNHLPAQPP-QYKTKAKNAQEA 353
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT R+P + L + KLY LIW RT+ACQM AT+ I VD+ AD V
Sbjct: 354 HEAIRPTSALRIPEEIKAHLSIEQYKLYDLIWKRTVACQMIHATLDTIAVDLATADSLHV 413
Query: 767 FRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
FR++ S + GF Y E VD EE D +L + GD + L E+ L
Sbjct: 414 FRANGSTLRDPGFMQVYREGVD------DTPEEGDER----LLPAFTEGDAVPLQEIALS 463
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PP RYSE SLVK LEE GIGRPSTYAS + LQ R YV + +R P GR+V+
Sbjct: 464 QHFTEPPPRYSEASLVKALEEYGIGRPSTYASIISTLQQREYVDMPNRRFVPTDVGRVVN 523
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
+FL+ +F++ DY FTA +E ELD +S G +W ++ +W F +
Sbjct: 524 SFLTQHFTQYVDYDFTAHLEDELDEISRGEKDWIPVMERFWFSFR--------------D 569
Query: 946 KMLEKTFGDSLFASLPNKDRSC-PVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
++ EK S ++ ++ P G+ + ++ R+G IG A
Sbjct: 570 RVEEKEASVSREQAVQARELGLDPKSGKPVSV-RMGRYGPLVQIGTKDDEEKPRFASLRL 628
Query: 1005 GDDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
G + +L+ + + P+ +GH P E V + G +G YV+ G + AS+
Sbjct: 629 GQKMDTLSLEEALELFKLPRALGHTPEG-EPVSVSIGRFGPYVKFGS-------RYASIK 680
Query: 1064 HIKDVDSITLEDALELLRYPVNLGN----HPKDGQPIMLRLARAGFSVRHRRTIASVPKN 1119
D +I L ALEL+ L + + I + R G V + A VPK+
Sbjct: 681 GEDDPYTIELPRALELVEEKKQLDASRFIKAFEAEGIQILNGRFGPYVTDGKKNARVPKD 740
Query: 1120 MKPNDVTLEKALEFLSGKDVRRCGRPKGKPK 1150
+P ++LE+ L+ ++ + GK K
Sbjct: 741 REPAALSLEECQTLLANAPEKKSRKAAGKTK 771
>gi|335424670|ref|ZP_08553674.1| DNA topoisomerase I [Salinisphaera shabanensis E1L3A]
gi|334888101|gb|EGM26407.1| DNA topoisomerase I [Salinisphaera shabanensis E1L3A]
Length = 843
Score = 497 bits (1280), Expect = e-137, Method: Compositional matrix adjust.
Identities = 311/814 (38%), Positives = 459/814 (56%), Gaps = 53/814 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
+++V+VES KA+ I+ YLG YEVL SYGHVRDL + G+V + DF+M +++
Sbjct: 3 RNLVIVESPAKARTIEKYLGKDYEVLASYGHVRDLVPKEGAVDTEHDFAMRYDIIDRNAK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ I +L ++ L+LA+DPDREGEAIAWH++E+L+++ L + VARVVFHEIT+ +
Sbjct: 63 QVDKIARSLKKSDALLLATDPDREGEAIAWHLLELLRERGLLEDK-HVARVVFHEITKKA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+ A+ REI +LV A ARRALDYL+GFN+SPLLWRK+ SAGRVQS AL LIC+
Sbjct: 122 VGSAVANPREISDDLVNAQQARRALDYLVGFNLSPLLWRKVQRGLSAGRVQSPALRLICE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI---GSHTEAK 586
R+ EI+ F PQEYW +EA ++K D F A L+ +++ Q ++ GS A
Sbjct: 182 RDAEIEAFIPQEYWKIEAQVEK------DAQPFSARLSQLDGEKVEQFTVNNQGSADAAL 235
Query: 587 DIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ K +V+K ++ R P+ TSTLQQ+AA KL F+A TM+ AQ LYEGV
Sbjct: 236 ETLTKAAQGQLRVVKVDRKQRKRNPAPPFTTSTLQQEAARKLGFTAKRTMRTAQSLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ A GLITYMRTD + ++ +A E+RS+I +RYG + P + PR + K KNAQEA
Sbjct: 296 SIDGAEATGLITYMRTDSVSLAADAVNELRSMIGKRYGDKNLP-DAPRTFKTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI- 765
HEAIRPT+ R+P + L D +LY LIW RT+A QM A + D+ D++
Sbjct: 355 HEAIRPTESARIPDEIKSNLTSDQARLYELIWQRTVASQMMHALFDTVSADLAAGDDAKH 414
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
+FR+S + GF + Y++ + ++ L L+ + L L E+
Sbjct: 415 LFRASGRTLREPGFLSVYKEGKDDDKGDDDADKR--------LPHLEENELLKLAEIIPT 466
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PP R++E +LVK LEE IGRPSTYAS + LQDR YV + + P G++V+
Sbjct: 467 QHFTEPPPRFTEAALVKTLEEYDIGRPSTYASIISTLQDREYVEMDGKAFMPTPLGKIVN 526
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
FL+ +F+ DY FTA++E LD VS G +W+ LL ++W RFS Q L +V
Sbjct: 527 KFLTDHFTRYVDYKFTANLEDRLDAVSRGEEKWQPLLREFWDRFSEQIESKQDLSREEVA 586
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
+ E G + P G+ +I ++ RFG IG A G
Sbjct: 587 QARE--LG------------TDPKSGK-PVIVRIGRFGPFVQIGSKDDEEKPKFAGLRKG 631
Query: 1006 DDDEEDTLQRNTNV-DEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSH 1064
D ++ TL + + P+ +G P E++++ G +G YV+ G+ K AS+
Sbjct: 632 QDMDKITLDEALYLFNLPRDLGETPEG-EEMIVNVGRFGPYVRYGK-------KFASLKE 683
Query: 1065 IKDVDSITLEDALELL-----RYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKN 1119
D ++T E ALE++ L H + + I ++ G + + ASVPK+
Sbjct: 684 -DDPYTVTKERALEVVAAKKEADAKKLIKH-FEAEGIKVQHGPFGVYITDGKKNASVPKD 741
Query: 1120 MKPNDVTLEKALEFLS-GKDVRRCGRPKGKPKRE 1152
+P D+TLE+ E ++ + ++ GR KG K++
Sbjct: 742 QEPADLTLEQCQEIIAKAPEKKKRGR-KGAAKKD 774
>gi|304388919|ref|ZP_07370966.1| DNA topoisomerase TopA [Neisseria meningitidis ATCC 13091]
gi|304337053|gb|EFM03240.1| DNA topoisomerase TopA [Neisseria meningitidis ATCC 13091]
Length = 768
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 275/650 (42%), Positives = 380/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD ++ S F A L + +L Q + + T D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSRKGRS----KFTAKLAQYNGAKLEQFDLSNETAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPS-ASKQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W L+ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|349575095|ref|ZP_08887019.1| DNA topoisomerase TopA [Neisseria shayeganii 871]
gi|348013308|gb|EGY52228.1| DNA topoisomerase TopA [Neisseria shayeganii 871]
Length = 764
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 272/650 (41%), Positives = 385/650 (59%), Gaps = 36/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VESVTKAK +Q YLG ++VL SYGHVRDL ++G+V P+ DF+M +E+ S
Sbjct: 2 AKNLLIVESVTKAKSMQKYLGSDFQVLASYGHVRDLIPKNGAVDPEHDFAMKYELISKNA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A AEN+ LA+DPDREGEAI+WH+ E+L+ + L +NI RVVFHE+T+
Sbjct: 62 KHVDAIVAAAKEAENIYLATDPDREGEAISWHLTEILKSKRGL-KNIRPQRVVFHEVTQK 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+++ A+Q RE+D +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVQEAIQHPRELDIHLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ +EYW+V LD + F L ++ ++L Q ++ + +
Sbjct: 181 ERENEIRAFESREYWSVH--LDSHKGRQ----KFATKLIQWRGEKLEQFALADEAAQQAV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ + QV + K+ RK PY TST+QQDA KL + TM+ AQ+L+EGV +
Sbjct: 235 LDALAGHSAQVAEVVKKKATRKPAAPYTTSTMQQDAVRKLGMTTDRTMRTAQQLFEGVDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD + +S +A EIR I + G + P+ R Y K KNAQEAHE
Sbjct: 295 GQG-AVGLITYMRTDSVTLSADALTEIRHYIENKIGGDYLPKSA-RAYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM A DI D +FR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMVEAKFDATSADIQLGDG--IFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+S + F GF + Y++ +E++ E L L G+ L + ++ +QH
Sbjct: 411 ASGQVLVFDGFLSVYQE---------GQDEDEESEDGKKLPDLVAGETLPVDKLYGEQHF 461
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP R++E +LVK LEE GIGRPSTYAS +K L+DR YVTV R P G +V+ FL
Sbjct: 462 TQPPPRFNEATLVKALEEFGIGRPSTYASIIKTLKDREYVTVDQRRFLPTDTGDIVNKFL 521
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F + DY FTA +E +LD++++G W ++ +W F +++
Sbjct: 522 TEHFEQYVDYDFTAKLEDQLDDIASGKRAWVPVMDKFWKGFH--------------KQIA 567
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CG+ L K + G FI C+ +P C+Y
Sbjct: 568 EKEGIERAKITTQELDETCPKCGQHKLQIKFGK--RGRFIACSGYPECDY 615
>gi|335041805|ref|ZP_08534832.1| topoisomerase IA [Methylophaga aminisulfidivorans MP]
gi|333788419|gb|EGL54301.1| topoisomerase IA [Methylophaga aminisulfidivorans MP]
Length = 760
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 291/705 (41%), Positives = 413/705 (58%), Gaps = 53/705 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
GK +V+VES KAK I+ YLG EVL SYGHVRDL + G+V DF M ++V
Sbjct: 2 GKKLVIVESPAKAKTIKKYLGKDVEVLASYGHVRDLLPKEGAVDTAKDFEMKYQVIDRNS 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A+ A+ L LA+DPDREGEAI+WH+ E+L+++ AL + T RVVFHEIT+
Sbjct: 62 KHVDAIVKAMKKADALYLATDPDREGEAISWHLYELLKKRGALKDKET-HRVVFHEITKQ 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ RE+ +LV A ARRALDYL+GF +SPLLW+K+ SAGRVQS AL +I
Sbjct: 121 AVNDAVAHPRELSMSLVNAQQARRALDYLVGFTLSPLLWKKVRRGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE+EI+ F +EYW++EA S D F A LT+F+ ++L+Q S+ ++ +
Sbjct: 181 ERELEIEAFVAKEYWSIEA------DASADKNDFQAKLTYFEGEKLSQFSVTDEKQSAKV 234
Query: 589 EQKINSA--NFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
+ ++ A ++ N ++ ++NP P+ TSTLQQ+A+ KL F A TM +AQ+LYEG
Sbjct: 235 VKALDKAAQGKLLVSNVEKKQRKRNPAAPFTTSTLQQEASRKLGFGAQRTMSIAQQLYEG 294
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
V +G A GLITYMRTD + ++ EA EIR I E+YG P + P++Y K KNAQE
Sbjct: 295 VDTGEG-AVGLITYMRTDSVTLAQEALDEIRGFIAEKYGQKMVPAK-PQEYKTKSKNAQE 352
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEAIRPT + R P + L D LKLY+L+W RTMA QM AT+ + VD+ +
Sbjct: 353 AHEAIRPTSVLRTPEDMKAYLSADQLKLYTLVWQRTMASQMIHATLNTVAVDLA-CGKGN 411
Query: 766 VFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVEL 824
FR++ S V GF + Y ED D A K+ + +L ++ G + L +
Sbjct: 412 TFRANGSTVVNPGFMSVYLEDKDDSAASDKDEK---------LLPPMEVGQVVELKAIRP 462
Query: 825 KQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMV 884
++H T+PP RYSE SLV+ LEE IGRPSTYAS + L R YV + ++ +P GR+V
Sbjct: 463 ERHFTEPPPRYSEASLVRSLEEHDIGRPSTYASIISTLVQREYVEIINKRFHPTDVGRVV 522
Query: 885 SAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV 944
FL +F++ DY+FTA++E ELD V+ G EW LL +W F QV
Sbjct: 523 GKFLVDHFTKYVDYNFTAELEDELDAVARGEEEWVPLLRKFWGPFK-----------EQV 571
Query: 945 EKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFG-AGYFIGCNQHPRCNYIAKTL 1003
E ++ + L ++D CP CG+ SR G +G FIGC +P C+Y
Sbjct: 572 ETKDKEVQRSDVTQELLDED--CPKCGKKL----SSRLGRSGRFIGCTGYPECDYTRNI- 624
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
D EE T +EP+++ P + +++G YG ++
Sbjct: 625 ---DGEE------TTNNEPEVVEGRKCPKCDSDLWIRTGRYGKFI 660
>gi|404379582|ref|ZP_10984638.1| DNA topoisomerase I [Simonsiella muelleri ATCC 29453]
gi|294482847|gb|EFG30535.1| DNA topoisomerase I [Simonsiella muelleri ATCC 29453]
Length = 774
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 279/652 (42%), Positives = 385/652 (59%), Gaps = 37/652 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES K K I+ YLG +EVL S+GHVRDL + GSV ++ F+M +++ S
Sbjct: 2 AKNLLIVESPNKIKSIKKYLGGDFEVLASFGHVRDLVNKDGSVDTENHFAMKYQIISKNS 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENI--TVARVVFHEIT 466
H+ +I A A+ + LA+DPDREGEAI+WHI E+L+ + + +NI + RVVFHE+T
Sbjct: 62 KHVDAIVAAAKEADTIYLATDPDREGEAISWHIAEILKSKRGM-KNIGEKLQRVVFHEVT 120
Query: 467 EASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSL 526
++ A+Q R +D +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL L
Sbjct: 121 PKGVQAAIQHPRGLDMDLVDAQQARRALDYLVGFNLSPLLWKKIRYGLSAGRVQSPALRL 180
Query: 527 ICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAK 586
IC+RE EI F+ QEYW++ LD SH T F A LTH+Q+K+L Q S+
Sbjct: 181 ICERENEIRAFETQEYWSIH--LD---SHKGRT-KFSAKLTHWQNKKLEQFSLPDEASQA 234
Query: 587 DIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+I ++ QV +K+ RK PY TST+QQDA KL F+ TM+ AQ+L+EG+
Sbjct: 235 NILAQLQGKTAQVADVTKKKATRKPAAPYTTSTMQQDAVRKLGFTTDRTMRTAQQLFEGI 294
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ G A GLITYMRTD + +S +A EIR I + G+ P + Y K KNAQEA
Sbjct: 295 DVGQG-AVGLITYMRTDSVTLSQDALTEIRHYIENKIGADFLPSSA-KIYKTKSKNAQEA 352
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT + R P + L D KLY +IW RT+ACQM A VDI N E V
Sbjct: 353 HEAIRPTSVYRSPESVKPFLSPDQFKLYQMIWQRTVACQMVDAKFDATTVDI-NVGEG-V 410
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ + F GF + Y++ GA +EE+++ L + GD L + ++ +Q
Sbjct: 411 FRATGQVLTFAGFLSVYQE---GADEDDNSEEDNKK-----LPEMSVGDELPVDKLYGEQ 462
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS +K L+DR YV V+ R P G +V+
Sbjct: 463 HFTQPPPRFNEATLVKALEEFGIGRPSTYASIIKTLKDREYVIVEQRRFQPTDTGEIVNK 522
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL+ +F + DY FTA +E +LD ++ G EW ++ +W F ++
Sbjct: 523 FLTEHFEQYVDYDFTAKLENQLDEIANGKREWIPVMEKFWKGFH--------------KQ 568
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
++EK + + D CP CG L K R AG FI C +P C Y
Sbjct: 569 VVEKEGIERAKFTTQELDEICPECGNHKLQIKFGR--AGRFIACAGYPECGY 618
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 966 SCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+CP CG+G L+ + SRFG ++ C+Q+P C Y
Sbjct: 690 TCPQCGKGHLVERKSRFGTTFY-SCDQYPECKY 721
>gi|421907674|ref|ZP_16337549.1| DNA topoisomerase I [Neisseria meningitidis alpha704]
gi|393291343|emb|CCI73548.1| DNA topoisomerase I [Neisseria meningitidis alpha704]
Length = 821
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 276/658 (41%), Positives = 381/658 (57%), Gaps = 42/658 (6%)
Query: 346 PPS-----GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMV 400
PPS K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M
Sbjct: 47 PPSRERQMAKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMK 106
Query: 401 WEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARV 460
+++ S H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RV
Sbjct: 107 YQLISRNGKHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRV 165
Query: 461 VFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQ 520
VFHEIT+ ++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQ
Sbjct: 166 VFHEITKNAVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQ 225
Query: 521 SAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIG 580
S AL LIC+RE EI F+ QEYWTV LD + S F A L + +L Q +
Sbjct: 226 SPALRLICERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLS 279
Query: 581 SHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQ 640
+ D+ +++ V K+ R P+ TST+QQDA KL F+ TM+ AQ
Sbjct: 280 NEAAQADVLKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQ 339
Query: 641 KLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKV 700
+LYEG+ + G A GLITYMRTD ++++DEA EIR I + G + P ++Y K
Sbjct: 340 QLYEGIDVGQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKS 397
Query: 701 KNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN 760
KNAQEAHEAIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI
Sbjct: 398 KNAQEAHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMMPAKFDQTTVDITV 457
Query: 761 ADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLG 820
VFR + F GF + YE+ + L + GD L +
Sbjct: 458 GKG--VFRVTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVD 505
Query: 821 EVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFR 880
++ +QH T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P
Sbjct: 506 KLYGEQHFTTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDT 565
Query: 881 GRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLH 940
G +V+ FL+ +F++ DY FTA +E +LD ++ G +W ++ +W F
Sbjct: 566 GDIVNKFLTEHFAQYVDYHFTAKLEDQLDEIAGGKRQWIPVMDKFWKPF----------- 614
Query: 941 IHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
I QVE EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 615 IKQVE---EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 667
>gi|385327484|ref|YP_005881787.1| DNA topoisomerase I [Neisseria meningitidis alpha710]
gi|308388336|gb|ADO30656.1| DNA topoisomerase I [Neisseria meningitidis alpha710]
Length = 821
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 277/658 (42%), Positives = 381/658 (57%), Gaps = 42/658 (6%)
Query: 346 PPS-----GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMV 400
PPS K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M
Sbjct: 47 PPSRERQMAKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMK 106
Query: 401 WEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARV 460
+++ S H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RV
Sbjct: 107 YQLISRNGKHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRV 165
Query: 461 VFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQ 520
VFHEIT+ ++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQ
Sbjct: 166 VFHEITKNAVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQ 225
Query: 521 SAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIG 580
S AL LIC+RE EI F+ QEYWTV LD + S F A L + +L Q +
Sbjct: 226 SPALRLICERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLP 279
Query: 581 SHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQ 640
+ D+ +++ V K+ R P+ TST+QQDA KL F+ TM+ AQ
Sbjct: 280 NEAAQADVLKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQ 339
Query: 641 KLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKV 700
+LYEG+ + G A GLITYMRTD ++++DEA EIR I + G + P ++Y K
Sbjct: 340 QLYEGIDVGQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKS 397
Query: 701 KNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN 760
KNAQEAHEAIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI
Sbjct: 398 KNAQEAHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITV 457
Query: 761 ADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLG 820
VFR + F GF + YE+ + L + GD L +
Sbjct: 458 GKG--VFRVTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVD 505
Query: 821 EVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFR 880
++ +QH T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P
Sbjct: 506 KLYGEQHFTTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDT 565
Query: 881 GRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLH 940
G +V+ FL+ +F++ DY FTA +E +LD ++ G +W L+ +W F
Sbjct: 566 GDIVNKFLTEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPF----------- 614
Query: 941 IHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
I QVE EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 615 IKQVE---EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 667
>gi|389604738|emb|CCA43664.1| DNA topoisomerase IA [Neisseria meningitidis alpha522]
Length = 821
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/687 (41%), Positives = 396/687 (57%), Gaps = 45/687 (6%)
Query: 320 KASLQRQTSEEM--VIVPRGQNTQNPL-YPPS-----GKSVVVVESVTKAKVIQGYLGDM 371
+A ++QT +E+ + R + ++ P PPS K++++VES +KAK ++ YLG
Sbjct: 18 RAFTRQQTHDELKRLQTARPRPSETPASKPPSRERQMAKNLLIVESPSKAKTLKKYLGGD 77
Query: 372 YEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPD 431
+E+L SYGHVRDL +SG+V PD+ F+M +++ S H+ +I AEN+ LA+DPD
Sbjct: 78 FEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNGKHVDAIVAGAKEAENIYLATDPD 137
Query: 432 REGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLAR 491
REGEAI+WH++E+L+ + L +NI RVVFHEIT+ ++ A+ REI+ +LV A AR
Sbjct: 138 REGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKNAVLDAVAHPREIEMDLVDAQQAR 196
Query: 492 RALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDK 551
RALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC+RE EI F+ QEYWTV LD
Sbjct: 197 RALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLICERENEIRAFEAQEYWTVH--LDS 254
Query: 552 KESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKN 611
+ S F A L + +L Q + + D+ +++ V K+ R
Sbjct: 255 HKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADVLKELEGKEAVVTAIEKKKRSRNP 310
Query: 612 PTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEA 671
P+ TST+QQDA KL F+ TM+ AQ+LYEG+ + G A GLITYMRTD ++++DEA
Sbjct: 311 AAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDVGQG-AIGLITYMRTDSVNLADEA 369
Query: 672 AKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCL 731
EIR I + G + P ++Y K KNAQEAHEAIRPT + R P + L D
Sbjct: 370 LTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHEAIRPTSVYRTPESVKPFLSADQF 428
Query: 732 KLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAI 791
KLY +IW RT+ACQM PA Q VDI VFR + F GF + YE+
Sbjct: 429 KLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFRVTGQVQTFAGFLSVYEESSDDEE 486
Query: 792 RYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGR 851
+ L + GD L + ++ +QH T PP RY+E +LVK LEE GIGR
Sbjct: 487 GEDSKK----------LPEMSEGDKLPVDKLYGEQHFTTPPPRYNEATLVKALEEYGIGR 536
Query: 852 PSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNV 911
PSTYAS + L+DR YVT++ + P G +V+ FL+ +F++ DY FTA +E +LD +
Sbjct: 537 PSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFLTEHFAQYVDYHFTAKLEDQLDEI 596
Query: 912 SAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCG 971
+ G +W L+ +W F I QVE EK + + D +CP CG
Sbjct: 597 ADGKRQWIPLMDKFWKPF-----------IKQVE---EKEGIERAKFTTQELDETCPKCG 642
Query: 972 EGTLIFKVSRFGAGYFIGCNQHPRCNY 998
E L K + G F+ C +P C+Y
Sbjct: 643 EHKLQIKFGKMGR--FVACAGYPECSY 667
>gi|254672822|emb|CBA06977.1| DNA topoisomerase I [Neisseria meningitidis alpha275]
Length = 821
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 277/658 (42%), Positives = 382/658 (58%), Gaps = 42/658 (6%)
Query: 346 PPS-----GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMV 400
PPS K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M
Sbjct: 47 PPSRERQMAKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMK 106
Query: 401 WEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARV 460
+++ S H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RV
Sbjct: 107 YQLISRNSKHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRV 165
Query: 461 VFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQ 520
VFHEIT+ ++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQ
Sbjct: 166 VFHEITKNAVLDAVANPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQ 225
Query: 521 SAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIG 580
S AL LIC+RE EI F+ QEYWTV LD + S F A L + +L Q +
Sbjct: 226 SPALRLICERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLP 279
Query: 581 SHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQ 640
+ D+ +++ V K+ R P+ TST+QQDA KL F+ TM+ AQ
Sbjct: 280 NEAAQADVLKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQ 339
Query: 641 KLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKV 700
+LYEG+ + G A GLITYMRTD ++++DEA EIR I + G + P ++Y K
Sbjct: 340 QLYEGIDVGQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKS 397
Query: 701 KNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN 760
KNAQEAHEAIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI
Sbjct: 398 KNAQEAHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITV 457
Query: 761 ADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLG 820
VFR + F GF + YE+ + + L + GD L +
Sbjct: 458 GKG--VFRVTGQVQTFAGFLSVYEESNDDEESEDSKK----------LPEMSEGDKLPVD 505
Query: 821 EVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFR 880
++ +QH T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P
Sbjct: 506 KLYGEQHFTTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDT 565
Query: 881 GRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLH 940
G +V+ FL+ +F++ DY FTA +E +LD ++ G +W L+ +W F
Sbjct: 566 GDIVNKFLTEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPF----------- 614
Query: 941 IHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
I QVE EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 615 IKQVE---EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 667
>gi|114321779|ref|YP_743462.1| DNA topoisomerase I [Alkalilimnicola ehrlichii MLHE-1]
gi|114228173|gb|ABI57972.1| DNA topoisomerase I [Alkalilimnicola ehrlichii MLHE-1]
Length = 797
Score = 494 bits (1272), Expect = e-136, Method: Compositional matrix adjust.
Identities = 303/812 (37%), Positives = 429/812 (52%), Gaps = 119/812 (14%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I YLG Y+VL SYGHVRDL + G+V P+ F+M +
Sbjct: 3 KNLVIVESPAKAKTINKYLGKDYKVLASYGHVRDLVPKEGAVDPEHGFAMKYTTIDKNAK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I A+ A+ L LA+DPDREGEAI+WH+ E+L+++ AL + V RVVFHEIT +
Sbjct: 63 HVDTIAKAMKQADALYLATDPDREGEAISWHLYELLKEKGALKDK-PVYRVVFHEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A++ RE+ L+ A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL +I +
Sbjct: 122 IREAMEHPRELSTPLINAQQARRALDYLVGFNLSPLLWKKIATGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI++F +EYWTVEA L + +FP L +R+ Q I + A+++E
Sbjct: 182 REEEIEKFISREYWTVEADLARNGE------AFPGRLHTLDGQRVKQFDIDNGERAREVE 235
Query: 590 QKINSA-----------------------NFQVIKNSKRSMVRKNPTPYITSTLQQDAAN 626
++ A QV + K+ R P+ TSTLQQ+AA
Sbjct: 236 HQLARAAGMALSKSHIDAGEGESPVQSPGTVQVTQVEKKQRRRNPAAPFTTSTLQQEAAR 295
Query: 627 KLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSH 686
KL F+A TM++AQ+LYEG+ + G GLITYMRTD +++S EA ++R I +RYG
Sbjct: 296 KLGFTANRTMRVAQQLYEGIDI-GGGVTGLITYMRTDSVNLSQEAVADLRDTIAKRYGED 354
Query: 687 HAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQM 746
P+ P+ Y K KNAQEAHEAIRPT RLP + G L +D +LY LIW R +ACQM
Sbjct: 355 RLPK-APQVYRTKSKNAQEAHEAIRPTGAFRLPEEVRGKLSDDQFRLYELIWKRAVACQM 413
Query: 747 QPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFA 806
PA + + VD+ E FR++ S + GF A Y + ++ + D +
Sbjct: 414 IPALINTVAVDLA-CGEGNSFRATGSTIAEPGFMAVY-------LEGTDDRKPDVGSSER 465
Query: 807 ILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRN 866
IL LK GD + L ++ +QH T+PP RY+E SLV+ LEE GIGRPSTYA+ + LQ R
Sbjct: 466 ILPPLKEGDKVALERIKPEQHFTEPPPRYTEASLVRALEEYGIGRPSTYAAIISTLQQRK 525
Query: 867 YVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYW 926
YV + + P GR+V+ FL+ +F DY FTA +E +LD VS G +W LL ++W
Sbjct: 526 YVELDGKRFRPTDIGRVVNRFLTDHFDRYVDYDFTARLEDDLDAVSRGERDWVPLLEEFW 585
Query: 927 SRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGY 986
F + I + E M + G + P G+ + +V RFG
Sbjct: 586 QPFKD--KVDEKATISREEVMQSRDLG------------TDPKTGKPVSV-RVGRFGPFV 630
Query: 987 FIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPA-SKEKVLLKSGPYGFY 1045
+G DDEE +P+ G P S +K+ L
Sbjct: 631 QLGTK---------------DDEE----------KPRFAGLRPGQSMDKITL-------- 657
Query: 1046 VQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGF 1105
E+ALEL + P ++G P +G+P+ + + R G
Sbjct: 658 ----------------------------EEALELFKLPRDMGETP-EGEPMQVNIGRFGP 688
Query: 1106 SVRHRRTIASVPKNMKPNDVTLEKALEFLSGK 1137
VR S+ K+ P ++ E+ LE + K
Sbjct: 689 YVRFGNKFVSI-KDDDPYTISRERCLELVEEK 719
>gi|418289554|ref|ZP_12901823.1| DNA topoisomerase I [Neisseria meningitidis NM220]
gi|421549677|ref|ZP_15995687.1| DNA topoisomerase I [Neisseria meningitidis 69166]
gi|433470388|ref|ZP_20427788.1| DNA topoisomerase I [Neisseria meningitidis 68094]
gi|433476695|ref|ZP_20434023.1| DNA topoisomerase I [Neisseria meningitidis 70012]
gi|433525128|ref|ZP_20481774.1| DNA topoisomerase I [Neisseria meningitidis 69096]
gi|433537878|ref|ZP_20494365.1| DNA topoisomerase I [Neisseria meningitidis 70030]
gi|372203309|gb|EHP17008.1| DNA topoisomerase I [Neisseria meningitidis NM220]
gi|402331628|gb|EJU66960.1| DNA topoisomerase I [Neisseria meningitidis 69166]
gi|432211821|gb|ELK67765.1| DNA topoisomerase I [Neisseria meningitidis 68094]
gi|432217848|gb|ELK73713.1| DNA topoisomerase I [Neisseria meningitidis 70012]
gi|432263276|gb|ELL18496.1| DNA topoisomerase I [Neisseria meningitidis 69096]
gi|432276018|gb|ELL31080.1| DNA topoisomerase I [Neisseria meningitidis 70030]
Length = 768
Score = 494 bits (1272), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/650 (42%), Positives = 379/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLSNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPS-AAKQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP+RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPSRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W L+ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|261378980|ref|ZP_05983553.1| DNA topoisomerase [Neisseria cinerea ATCC 14685]
gi|269144595|gb|EEZ71013.1| DNA topoisomerase [Neisseria cinerea ATCC 14685]
Length = 768
Score = 494 bits (1272), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/650 (42%), Positives = 377/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD DF+M +E+
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVNPDQDFAMKYELIKRNA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIGNKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEESEDSKK----------LPEMSEGDKLPVDKLYSEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIANGKRQWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|121999104|ref|YP_001003891.1| DNA topoisomerase I [Halorhodospira halophila SL1]
gi|121590509|gb|ABM63089.1| DNA topoisomerase I [Halorhodospira halophila SL1]
Length = 799
Score = 494 bits (1272), Expect = e-136, Method: Compositional matrix adjust.
Identities = 302/813 (37%), Positives = 441/813 (54%), Gaps = 118/813 (14%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
GKS+V+VES KA+ I YLG YEV+ SYGHVRDL + G+V P F+M +
Sbjct: 2 GKSLVIVESPAKARTINKYLGSDYEVMASYGHVRDLVPKEGAVDPSSGFAMKYAPIDKNQ 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A A+ L LA+DPDREGEAI+WH+VE+L+ + L ++ V RVVFHEIT+
Sbjct: 62 KHVDAIAKAARKADALYLATDPDREGEAISWHLVELLRDKGTL-DDKPVYRVVFHEITKG 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I+ A+ R+I LV A ARRALDYL+GFN+SPLLWRK+ SAGRVQS AL +IC
Sbjct: 121 AIQEAMNNPRDISEELVNAQQARRALDYLVGFNLSPLLWRKITSGLSAGRVQSPALRMIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI++F+PQEYW+VEA K + F A L+ +++ Q +I T A+++
Sbjct: 181 ERETEIEQFEPQEYWSVEADAAKAQQ------PFMAKLSQLHGEKVRQFTITDETHAQEV 234
Query: 589 EQKINSA----------------NFQVI-----KNSKRSMVRKNP-TPYITSTLQQDAAN 626
++ + A +VI + +R R+NP P+ITSTLQQ+A+
Sbjct: 235 DRTLREAARAQPDPARIGPTGDGETEVIGTLRVASVERKQRRRNPAAPFITSTLQQEASR 294
Query: 627 KLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSH 686
KL F+A+ TM++AQ+LYEG+ + +G+A GLITYMRTD +++S EA E+R I +RYG+
Sbjct: 295 KLGFTASRTMRIAQQLYEGIDVGEGSAVGLITYMRTDSVNLSGEAITEMRQAITDRYGAD 354
Query: 687 HAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQM 746
P + + Y + KNAQEAHEAIRPT R P + L+E+ KLY LIW R +A QM
Sbjct: 355 KLPGQA-QVYKTRSKNAQEAHEAIRPTSASRHPDDVRAYLNEEQRKLYDLIWKRAVASQM 413
Query: 747 QPATV-GQIQVDIGNADESIVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEA 804
+ AT+ +AD + R++ S V GF Y E D G ++D E
Sbjct: 414 KHATIHTVAVDLAADADARHLLRATGSTVADPGFMVVYREGNDEG--------KDDSGEK 465
Query: 805 FAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQD 864
F L L+ G+ + L + +QH T+PP RY+E SLV+ LEE GIGRPSTYAS + LQ+
Sbjct: 466 F--LPELEEGEQVDLHAIRAEQHFTEPPPRYTEASLVRALEEYGIGRPSTYASIISTLQN 523
Query: 865 RNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVD 924
RNYV + + P GR V+ FL+ +F DY FTA +E +LD +S G +W +L
Sbjct: 524 RNYVEMDGKRFIPTDIGRTVNKFLTEHFDRYVDYDFTARLEDDLDAISRGEQDWVPVLEA 583
Query: 925 YWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA 984
+W F + ++ + E + + G + P G+ + ++ R+G
Sbjct: 584 FWEPFRE--RVEEKKNVSRQEAVQARELG------------TDPKTGKPVTV-RIGRYGP 628
Query: 985 GYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGF 1044
+G DDDE +P+ G P
Sbjct: 629 FAQLGSR--------------DDDE-----------KPRFAGLRPG-------------- 649
Query: 1045 YVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAG 1104
+ +D+ITL++AL+L + P ++G +G+ + + + R G
Sbjct: 650 ---------------------QSIDTITLDEALQLFKLPRDMGE-TDEGEDVQVSIGRFG 687
Query: 1105 FSVRHRRTIASVPKNMKPNDVTLEKALEFLSGK 1137
VR+ + S+PK+ P +T E+A E + K
Sbjct: 688 PYVRYGKKFVSIPKDEDPYTITKERAHELVREK 720
>gi|444921087|ref|ZP_21240925.1| DNA topoisomerase 1 [Wohlfahrtiimonas chitiniclastica SH04]
gi|444507823|gb|ELV07997.1| DNA topoisomerase 1 [Wohlfahrtiimonas chitiniclastica SH04]
Length = 827
Score = 494 bits (1272), Expect = e-136, Method: Compositional matrix adjust.
Identities = 264/590 (44%), Positives = 369/590 (62%), Gaps = 24/590 (4%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I YLG Y+VL S+GH+RDL ++G+V PD DF+M +E+
Sbjct: 3 KTLVIVESPAKAKTINKYLGKDYKVLASFGHIRDLVPKTGAVDPDHDFAMKYEIVERNQK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ I AL A+ L+LA+DPDREGEAI+WHI E L +++ L + +VARVVFHEIT+++
Sbjct: 63 HINEIVKALKDADALLLATDPDREGEAISWHIKEYLDEKNLLKDK-SVARVVFHEITKSA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A+ R+I ++V A ARRALDYL+GFN+SPLLW+K+ SAGRVQ+ AL +IC+
Sbjct: 122 IEEAITHPRDISMDMVNAQQARRALDYLVGFNLSPLLWKKISPGLSAGRVQTPALRMICE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE I+ FKP+EYWT+E+ L + +F LT F +++ Q S + A +
Sbjct: 182 REDAIEAFKPEEYWTIESQLKHND------VAFKGRLTEFDGQKVEQFSFTNEPSAMTAK 235
Query: 590 QKINSANFQV--IKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ + N ++ R+NPT P+ TST+QQ+AA KL F+ T TM+ AQ LYEG+
Sbjct: 236 NALIQTFGQMLPVYNIEKKQRRRNPTAPFTTSTMQQEAARKLGFATTRTMRTAQSLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ T GLITYMRTD + ++ EA +EI +L+ RYG + PE PR Y K KNAQEA
Sbjct: 296 NIGTETI-GLITYMRTDSVSLAKEAVEEIAALVKTRYGDDYLPE-TPRVYKTKSKNAQEA 353
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT R P + L D +LY LIW RT+A QM A + + VD+G A
Sbjct: 354 HEAIRPTSAFRHPDDIKQYLTSDQFRLYELIWKRTVASQMSSAILDTVAVDLGQAKLH-T 412
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKEN-EENDRHEAFAILNSLKTGDPLYLGEVELK 825
FR++ S + F GF I Y E+ ++ + +L +L GD +++ EV
Sbjct: 413 FRANGSTILFPGF----------IIVYTESFDDKKEEDDEKLLPALNVGDAVHIDEVIAT 462
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PP R+SE SLVK LEE IGRPSTY++ + LQ+R YVTV R +P GR+VS
Sbjct: 463 QHFTEPPPRFSEASLVKALEEHDIGRPSTYSAIISTLQNREYVTVDQRRFFPTDVGRIVS 522
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTC 935
FL+ +F++ DY FTA ME ELD ++ G W ++ ++W+ F C
Sbjct: 523 RFLTEHFTQYVDYDFTAKMEGELDEIANGQLAWIPVMKEFWTPFHELCVT 572
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 1018 NVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDAL 1077
+V + + +G P S + V ++ G +G + Q+G+ PK AS+ + +++ITLE+AL
Sbjct: 581 DVAQARELGIDPKSGKPVSVRIGRFGPFAQIGDKDDEEKPKFASLRKEQRINTITLEEAL 640
Query: 1078 ELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFL 1134
L P +LG ++G+ + + R G +++ + S+ K P + L +ALE +
Sbjct: 641 ALFTLPRSLGT-TEEGEAVRANIGRFGPYIQYGQKFVSL-KEDDPYTIELPRALELV 695
>gi|254671141|emb|CBA08183.1| DNA topoisomerase I [Neisseria meningitidis alpha153]
Length = 821
Score = 494 bits (1272), Expect = e-136, Method: Compositional matrix adjust.
Identities = 277/658 (42%), Positives = 381/658 (57%), Gaps = 42/658 (6%)
Query: 346 PPS-----GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMV 400
PPS K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M
Sbjct: 47 PPSRERQMAKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMK 106
Query: 401 WEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARV 460
+++ S H+ +I AEN+ LA+DPDREGEAI+WH+ E+L+ + L +NI RV
Sbjct: 107 YQLISRNGKHVDAIVAGAKEAENIYLATDPDREGEAISWHLSEILKSKRGL-KNIKPQRV 165
Query: 461 VFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQ 520
VFHEIT+ ++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQ
Sbjct: 166 VFHEITKNAVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQ 225
Query: 521 SAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIG 580
S AL LIC+RE EI F+ QEYWTV LD + S F A L + +L Q +
Sbjct: 226 SPALRLICERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLS 279
Query: 581 SHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQ 640
+ D+ +++ V K+ R P+ TST+QQDA KL F+ TM+ AQ
Sbjct: 280 NEAAQADVLKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQ 339
Query: 641 KLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKV 700
+LYEG+ + G A GLITYMRTD ++++DEA EIR I + G + P ++Y K
Sbjct: 340 QLYEGIDVGQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKS 397
Query: 701 KNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN 760
KNAQEAHEAIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI
Sbjct: 398 KNAQEAHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITV 457
Query: 761 ADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLG 820
VFR + F GF + YE+ + + L + GD L +
Sbjct: 458 GKG--VFRVTGQVQTFAGFLSVYEESNDDEESEDSKK----------LPEMSEGDKLPVD 505
Query: 821 EVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFR 880
++ +QH T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P
Sbjct: 506 KLYGEQHFTTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDT 565
Query: 881 GRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLH 940
G +V+ FL+ +F++ DY FTA +E +LD ++ G +W L+ +W F
Sbjct: 566 GDIVNKFLTEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPF----------- 614
Query: 941 IHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
I QVE EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 615 IKQVE---EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 667
>gi|421564477|ref|ZP_16010276.1| DNA topoisomerase I [Neisseria meningitidis NM3081]
gi|402346074|gb|EJU81178.1| DNA topoisomerase I [Neisseria meningitidis NM3081]
Length = 768
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W L+ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIAGGKRQWIPLMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|121633996|ref|YP_974241.1| DNA topoisomerase I [Neisseria meningitidis FAM18]
gi|416190866|ref|ZP_11615977.1| DNA topoisomerase I [Neisseria meningitidis ES14902]
gi|433491591|ref|ZP_20448694.1| DNA topoisomerase I [Neisseria meningitidis NM586]
gi|433493713|ref|ZP_20450789.1| DNA topoisomerase I [Neisseria meningitidis NM762]
gi|433495829|ref|ZP_20452878.1| DNA topoisomerase I [Neisseria meningitidis M7089]
gi|433497829|ref|ZP_20454846.1| DNA topoisomerase I [Neisseria meningitidis M7124]
gi|433499901|ref|ZP_20456894.1| DNA topoisomerase I [Neisseria meningitidis NM174]
gi|433501948|ref|ZP_20458921.1| DNA topoisomerase I [Neisseria meningitidis NM126]
gi|120865702|emb|CAM09429.1| DNA topoisomerase I [Neisseria meningitidis FAM18]
gi|325138797|gb|EGC61349.1| DNA topoisomerase I [Neisseria meningitidis ES14902]
gi|432231276|gb|ELK86943.1| DNA topoisomerase I [Neisseria meningitidis NM586]
gi|432231891|gb|ELK87546.1| DNA topoisomerase I [Neisseria meningitidis NM762]
gi|432237012|gb|ELK92612.1| DNA topoisomerase I [Neisseria meningitidis M7124]
gi|432237471|gb|ELK93064.1| DNA topoisomerase I [Neisseria meningitidis M7089]
gi|432237969|gb|ELK93554.1| DNA topoisomerase I [Neisseria meningitidis NM174]
gi|432243703|gb|ELK99209.1| DNA topoisomerase I [Neisseria meningitidis NM126]
Length = 768
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W L+ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIAGGKRQWIPLMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|416176250|ref|ZP_11609551.1| DNA topoisomerase I [Neisseria meningitidis M6190]
gi|418287310|ref|ZP_12899923.1| DNA topoisomerase I [Neisseria meningitidis NM233]
gi|325133185|gb|EGC55856.1| DNA topoisomerase I [Neisseria meningitidis M6190]
gi|372203881|gb|EHP17478.1| DNA topoisomerase I [Neisseria meningitidis NM233]
Length = 768
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W L+ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIAGGKRQWIPLMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|385850388|ref|YP_005896903.1| DNA topoisomerase I [Neisseria meningitidis M04-240196]
gi|416181162|ref|ZP_11611517.1| DNA topoisomerase I [Neisseria meningitidis M13399]
gi|416211462|ref|ZP_11621388.1| DNA topoisomerase I [Neisseria meningitidis M01-240013]
gi|325135227|gb|EGC57852.1| DNA topoisomerase I [Neisseria meningitidis M13399]
gi|325145440|gb|EGC67716.1| DNA topoisomerase I [Neisseria meningitidis M01-240013]
gi|325205211|gb|ADZ00664.1| DNA topoisomerase I [Neisseria meningitidis M04-240196]
Length = 768
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNS 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLSNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPS-AAKQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W L+ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|385339163|ref|YP_005893035.1| DNA topoisomerase I [Neisseria meningitidis G2136]
gi|421556104|ref|ZP_16002021.1| DNA topoisomerase I [Neisseria meningitidis 80179]
gi|433466235|ref|ZP_20423698.1| DNA topoisomerase I [Neisseria meningitidis 87255]
gi|325197407|gb|ADY92863.1| DNA topoisomerase I [Neisseria meningitidis G2136]
gi|402337957|gb|EJU73196.1| DNA topoisomerase I [Neisseria meningitidis 80179]
gi|432205023|gb|ELK61054.1| DNA topoisomerase I [Neisseria meningitidis 87255]
Length = 768
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLSNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPS-AAKQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W L+ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|433472499|ref|ZP_20429869.1| DNA topoisomerase I [Neisseria meningitidis 97021]
gi|433480923|ref|ZP_20438195.1| DNA topoisomerase I [Neisseria meningitidis 2006087]
gi|433483047|ref|ZP_20440287.1| DNA topoisomerase I [Neisseria meningitidis 2002038]
gi|433485145|ref|ZP_20442352.1| DNA topoisomerase I [Neisseria meningitidis 97014]
gi|432212383|gb|ELK68321.1| DNA topoisomerase I [Neisseria meningitidis 97021]
gi|432219276|gb|ELK75123.1| DNA topoisomerase I [Neisseria meningitidis 2006087]
gi|432223877|gb|ELK79652.1| DNA topoisomerase I [Neisseria meningitidis 2002038]
gi|432224988|gb|ELK80748.1| DNA topoisomerase I [Neisseria meningitidis 97014]
Length = 768
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLSNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPS-AAKQYNTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIAGGKRQWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|421558168|ref|ZP_16004052.1| DNA topoisomerase I [Neisseria meningitidis 92045]
gi|402338562|gb|EJU73793.1| DNA topoisomerase I [Neisseria meningitidis 92045]
Length = 768
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNS 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLSNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPS-AAKQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W L+ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|417957679|ref|ZP_12600599.1| DNA topoisomerase [Neisseria weaveri ATCC 51223]
gi|343968012|gb|EGV36250.1| DNA topoisomerase [Neisseria weaveri ATCC 51223]
Length = 775
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 279/698 (39%), Positives = 394/698 (56%), Gaps = 71/698 (10%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL ++G+V PD++F M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGSEFEILASYGHVRDLVPKTGAVDPDNNFVMKYQMVSRNA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A AENL LA+DPDREGEAI+WH+ E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAAAKEAENLYLATDPDREGEAISWHLQEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ RE++ NLV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAIAHPRELEENLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYW+V LD + S F A L H+ ++L Q S+ + + +
Sbjct: 181 ERENEIRAFEAQEYWSVH--LDSHKGRS----KFTAKLVHWNGEKLEQFSLPNEAAQQAV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ + QV K+ R P+ TST+QQDA KL + TM+ AQ+LYEG+ +
Sbjct: 235 LKGLEGQEAQVAAIEKKKRSRNPAAPFTTSTMQQDAVRKLGMTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD + +SDEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-ATGLITYMRTDSVTLSDEALTEIRHYIENKIGKDYLPS-AAKQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIV 766
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI GN V
Sbjct: 353 AIRPTSVYRTPESVKPFLTADQFKLYQMIWQRTVACQMNPAKFDQTTVDIAVGNG----V 408
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR + F GF + YE+ ++ND E L +K G+ L + + +Q
Sbjct: 409 FRVTGQVQTFAGFLSVYEE---------GTDDNDEDEDNKKLPEMKEGEKLPVDNIYGEQ 459
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T PP R++E +LVK LEE GIGRPSTYAS + L++R YVT++ + P G +V+
Sbjct: 460 HFTTPPPRFNEATLVKALEEFGIGRPSTYASIISTLKEREYVTLEQKRFMPTDTGDIVNK 519
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF----------------- 929
FL+ +F++ DY FTA +E +LD ++ G +W ++ +W F
Sbjct: 520 FLTEHFAQYVDYHFTAKLEDQLDEIATGKRQWIPVMDKFWKGFHKQVEEKEGIERAKFTT 579
Query: 930 ----------------------------SSYCTCAQSLHIHQVEKMLEKTFGDSLFASLP 961
+ Y C+ + ++++ + +
Sbjct: 580 EELDEICPKCGNHKLQIKFGRMGRFVACAGYPECSYTRNVNETAEQAAERIAKEAAEQAE 639
Query: 962 NKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYI 999
+ R CP CG G L++K SR G+ FIGC +P+C YI
Sbjct: 640 LEGRECPKCG-GGLVYKYSRTGSK-FIGCANYPKCKYI 675
>gi|421562345|ref|ZP_16008172.1| DNA topoisomerase I [Neisseria meningitidis NM2795]
gi|402343001|gb|EJU78156.1| DNA topoisomerase I [Neisseria meningitidis NM2795]
Length = 768
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLSNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPS-AAKQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMMPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIAGGKRQWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|421560270|ref|ZP_16006129.1| DNA topoisomerase I [Neisseria meningitidis NM2657]
gi|402340443|gb|EJU75643.1| DNA topoisomerase I [Neisseria meningitidis NM2657]
Length = 768
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/650 (42%), Positives = 379/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLSNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPS-AAKQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESNDDEESEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W L+ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|433520905|ref|ZP_20477607.1| DNA topoisomerase I [Neisseria meningitidis 61103]
gi|432262689|gb|ELL17924.1| DNA topoisomerase I [Neisseria meningitidis 61103]
Length = 768
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/650 (42%), Positives = 379/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKIYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLSNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPS-AAKQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP+RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPSRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W L+ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|385854296|ref|YP_005900809.1| DNA topoisomerase I [Neisseria meningitidis M01-240355]
gi|325203237|gb|ADY98690.1| DNA topoisomerase I [Neisseria meningitidis M01-240355]
Length = 768
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLSNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPS-AAKQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIAGGKRQWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|421553867|ref|ZP_15999819.1| DNA topoisomerase I [Neisseria meningitidis 98008]
gi|402334225|gb|EJU69517.1| DNA topoisomerase I [Neisseria meningitidis 98008]
Length = 768
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLSNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPS-AAKQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIAGGKRQWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|422110710|ref|ZP_16380624.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378538|emb|CBX22810.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 768
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIQPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD ++ S F A L + +L Q + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSRKGRS----KFTAKLAQYNGAKLEQFDLPDEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPS-ASKQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIAGGKRQWVPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|319639531|ref|ZP_07994278.1| DNA topoisomerase I [Neisseria mucosa C102]
gi|317399102|gb|EFV79776.1| DNA topoisomerase I [Neisseria mucosa C102]
Length = 768
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/650 (42%), Positives = 379/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNS 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + T D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNETAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKGAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GRG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSSA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIANGKRQWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|416199754|ref|ZP_11619463.1| DNA topoisomerase I [Neisseria meningitidis 961-5945]
gi|421543520|ref|ZP_15989611.1| DNA topoisomerase I [Neisseria meningitidis NM140]
gi|421545580|ref|ZP_15991640.1| DNA topoisomerase I [Neisseria meningitidis NM183]
gi|421547649|ref|ZP_15993681.1| DNA topoisomerase I [Neisseria meningitidis NM2781]
gi|421551856|ref|ZP_15997838.1| DNA topoisomerase I [Neisseria meningitidis NM576]
gi|325143278|gb|EGC65616.1| DNA topoisomerase I [Neisseria meningitidis 961-5945]
gi|402325808|gb|EJU61215.1| DNA topoisomerase I [Neisseria meningitidis NM183]
gi|402326362|gb|EJU61764.1| DNA topoisomerase I [Neisseria meningitidis NM140]
gi|402327669|gb|EJU63056.1| DNA topoisomerase I [Neisseria meningitidis NM2781]
gi|402333124|gb|EJU68439.1| DNA topoisomerase I [Neisseria meningitidis NM576]
Length = 768
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/650 (42%), Positives = 379/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNS 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVANPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESNDDEESEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W L+ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|385323269|ref|YP_005877708.1| DNA topoisomerase I (Omega-protein; relaxing enzyme; untwisting
enzyme; swivelase) [Neisseria meningitidis 8013]
gi|261391656|emb|CAX49104.1| DNA topoisomerase I (Omega-protein; relaxing enzyme; untwisting
enzyme; swivelase) [Neisseria meningitidis 8013]
Length = 768
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNS 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVANPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W L+ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|433535718|ref|ZP_20492238.1| DNA topoisomerase I [Neisseria meningitidis 77221]
gi|432276729|gb|ELL31784.1| DNA topoisomerase I [Neisseria meningitidis 77221]
Length = 768
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W L+ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|59802183|ref|YP_208895.1| DNA topoisomerase I [Neisseria gonorrhoeae FA 1090]
gi|293398228|ref|ZP_06642433.1| DNA topoisomerase I [Neisseria gonorrhoeae F62]
gi|59719078|gb|AAW90483.1| putative DNA topoisomerase I [Neisseria gonorrhoeae FA 1090]
gi|291611491|gb|EFF40561.1| DNA topoisomerase I [Neisseria gonorrhoeae F62]
Length = 768
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAAAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEESEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRRWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|254805836|ref|YP_003084057.1| DNA topoisomerase I [Neisseria meningitidis alpha14]
gi|421541463|ref|ZP_15987580.1| DNA topoisomerase I [Neisseria meningitidis NM255]
gi|421566590|ref|ZP_16012333.1| DNA topoisomerase I [Neisseria meningitidis NM3001]
gi|254669378|emb|CBA08511.1| DNA Topoisomerase I [Neisseria meningitidis alpha14]
gi|402319832|gb|EJU55336.1| DNA topoisomerase I [Neisseria meningitidis NM255]
gi|402345014|gb|EJU80141.1| DNA topoisomerase I [Neisseria meningitidis NM3001]
Length = 768
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W L+ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|385342841|ref|YP_005896712.1| DNA topoisomerase I [Neisseria meningitidis M01-240149]
gi|385856266|ref|YP_005902778.1| DNA topoisomerase I [Neisseria meningitidis NZ-05/33]
gi|416167591|ref|ZP_11607689.1| DNA topoisomerase I [Neisseria meningitidis OX99.30304]
gi|416186065|ref|ZP_11613514.1| DNA topoisomerase I [Neisseria meningitidis M0579]
gi|325131153|gb|EGC53874.1| DNA topoisomerase I [Neisseria meningitidis OX99.30304]
gi|325137177|gb|EGC59772.1| DNA topoisomerase I [Neisseria meningitidis M0579]
gi|325203047|gb|ADY98501.1| DNA topoisomerase I [Neisseria meningitidis M01-240149]
gi|325207155|gb|ADZ02607.1| DNA topoisomerase I [Neisseria meningitidis NZ-05/33]
Length = 768
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W L+ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|416159211|ref|ZP_11605687.1| DNA topoisomerase I [Neisseria meningitidis N1568]
gi|325129154|gb|EGC52002.1| DNA topoisomerase I [Neisseria meningitidis N1568]
Length = 768
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIAGGKRQWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|268602395|ref|ZP_06136562.1| DNA topoisomerase I [Neisseria gonorrhoeae PID18]
gi|291042752|ref|ZP_06568493.1| DNA topoisomerase I [Neisseria gonorrhoeae DGI2]
gi|268586526|gb|EEZ51202.1| DNA topoisomerase I [Neisseria gonorrhoeae PID18]
gi|291013186|gb|EFE05152.1| DNA topoisomerase I [Neisseria gonorrhoeae DGI2]
Length = 768
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/650 (42%), Positives = 377/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAAAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVANPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPDEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEESEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRRWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|15676046|ref|NP_273176.1| DNA topoisomerase I [Neisseria meningitidis MC58]
gi|385852328|ref|YP_005898842.1| DNA topoisomerase I [Neisseria meningitidis H44/76]
gi|416194648|ref|ZP_11617418.1| DNA topoisomerase I [Neisseria meningitidis CU385]
gi|427826218|ref|ZP_18993277.1| DNA topoisomerase I [Neisseria meningitidis H44/76]
gi|433464112|ref|ZP_20421606.1| DNA topoisomerase I [Neisseria meningitidis NM422]
gi|433487316|ref|ZP_20444495.1| DNA topoisomerase I [Neisseria meningitidis M13255]
gi|433489490|ref|ZP_20446629.1| DNA topoisomerase I [Neisseria meningitidis NM418]
gi|433504211|ref|ZP_20461156.1| DNA topoisomerase I [Neisseria meningitidis 9506]
gi|433506170|ref|ZP_20463089.1| DNA topoisomerase I [Neisseria meningitidis 9757]
gi|433508290|ref|ZP_20465176.1| DNA topoisomerase I [Neisseria meningitidis 12888]
gi|433510386|ref|ZP_20467230.1| DNA topoisomerase I [Neisseria meningitidis 4119]
gi|7225334|gb|AAF40577.1| DNA topoisomerase I [Neisseria meningitidis MC58]
gi|316985964|gb|EFV64903.1| DNA topoisomerase I [Neisseria meningitidis H44/76]
gi|325141263|gb|EGC63762.1| DNA topoisomerase I [Neisseria meningitidis CU385]
gi|325199332|gb|ADY94787.1| DNA topoisomerase I [Neisseria meningitidis H44/76]
gi|432205922|gb|ELK61937.1| DNA topoisomerase I [Neisseria meningitidis NM422]
gi|432226081|gb|ELK81814.1| DNA topoisomerase I [Neisseria meningitidis M13255]
gi|432230486|gb|ELK86161.1| DNA topoisomerase I [Neisseria meningitidis NM418]
gi|432243594|gb|ELK99105.1| DNA topoisomerase I [Neisseria meningitidis 9506]
gi|432244186|gb|ELK99681.1| DNA topoisomerase I [Neisseria meningitidis 9757]
gi|432249941|gb|ELL05339.1| DNA topoisomerase I [Neisseria meningitidis 12888]
gi|432250664|gb|ELL06054.1| DNA topoisomerase I [Neisseria meningitidis 4119]
Length = 768
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPS-AAKQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W L+ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|357436739|ref|XP_003588645.1| DNA topoisomerase, partial [Medicago truncatula]
gi|355477693|gb|AES58896.1| DNA topoisomerase, partial [Medicago truncatula]
Length = 546
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 242/337 (71%), Positives = 273/337 (81%), Gaps = 11/337 (3%)
Query: 303 KKNSGNCGRKKKSAKATKASLQRQTSEEMVIVPRGQNTQNPLYPPSGKSVVVVESVTKAK 362
+ +S + KKK + + L++ P G T PLYPP GKSV+VVESVTKAK
Sbjct: 220 QDSSASTRSKKKEVNSCQVDLEK---------PLGNFTGKPLYPPVGKSVMVVESVTKAK 270
Query: 363 VIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAE 422
VIQ YLGDMYEVLPSYGHVRDLA+RS SVRPDDDFSMVWEVPS+AWTHLKSI ALSGA
Sbjct: 271 VIQRYLGDMYEVLPSYGHVRDLASRSESVRPDDDFSMVWEVPSSAWTHLKSINAALSGAN 330
Query: 423 NLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDA 482
NLILASDPDREGEAIAWHI+EMLQQQ ALH NI +ARVVFHEITE SIK+ALQA REI+
Sbjct: 331 NLILASDPDREGEAIAWHIIEMLQQQGALHNNIFLARVVFHEITEQSIKIALQAPREINV 390
Query: 483 NLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEY 542
NLV AYLARRALDYLIGFNISPLLWRKLP CQSAGRVQSAALSLICDRE+EID+FKP+EY
Sbjct: 391 NLVHAYLARRALDYLIGFNISPLLWRKLPSCQSAGRVQSAALSLICDRELEIDQFKPKEY 450
Query: 543 WTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKN 602
WT+EA+ + KE +F AHLTHF S +LNQ SI S EA+D+E KINSA F+V+ +
Sbjct: 451 WTMEAMFNMKEQRLTKDLTFLAHLTHFNSNKLNQFSITSGREARDVESKINSAEFRVV-S 509
Query: 603 SKRSMVRKN-PTPYITSTLQQDAANKLNFSATYTMKL 638
K S V+ N PTPYITSTLQQDAANKLNFSA++TM +
Sbjct: 510 MKISKVQSNPPTPYITSTLQQDAANKLNFSASHTMAV 546
>gi|148265709|ref|YP_001232415.1| DNA topoisomerase I [Geobacter uraniireducens Rf4]
gi|146399209|gb|ABQ27842.1| DNA topoisomerase I [Geobacter uraniireducens Rf4]
Length = 756
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 293/702 (41%), Positives = 405/702 (57%), Gaps = 54/702 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
+ +V+VES KAK I+ +LG Y+VL S+GHVR L ++ GSV + DF + V +
Sbjct: 3 RHLVIVESPAKAKTIEKFLGTDYKVLASFGHVRALPSKQGSVDIEHDFEPKYAVLPESKK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +IK L +++L+LA+DPDREGEAI+WH++ L D I + RVVFHEIT+ +
Sbjct: 63 HIDAIKKELKNSDSLLLATDPDREGEAISWHLLAALGL-DKKKPAIDIKRVVFHEITKGA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I A++ R I LV A AR LDYL+GFN+SP LW+K+ SAGRVQS AL L+C+
Sbjct: 122 IIHAVENPRSISHELVDAQQARSVLDYLVGFNLSPFLWKKIRYGLSAGRVQSVALRLVCE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI F QEYWT+ A L ++ A+L + ++L + I A+ +
Sbjct: 182 REKEIQAFTEQEYWTIAAQLATGAQQNVT-----ANLVEAEGQKLGKFGIPDKAAAERLT 236
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ + + ++QV K ++ R+ P+ TSTLQQ+AA KL FSA TM +AQKLYEG+ +
Sbjct: 237 EILANGSYQVDKVTRSERKRQPSPPFTTSTLQQEAARKLGFSAKKTMSIAQKLYEGIDVG 296
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
+GT GLITYMRTD + +S +A E +I YG +A + PR + K KNAQEAHEA
Sbjct: 297 EGTV-GLITYMRTDSVVLSQQALDEAHEVITSLYGKEYALAK-PRFFKNKAKNAQEAHEA 354
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT I + P L L D KLY LIW RT+ACQM A + Q VDIG A E FR+
Sbjct: 355 IRPTYICKTPVELKKFLSSDQFKLYDLIWKRTVACQMAEALLDQTSVDIG-AGEGYKFRA 413
Query: 770 SCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ + + F GF Y E VD E EE + +L L GDPL L E+ +QH
Sbjct: 414 AGTVIRFPGFMKLYIEGVD------DETEEKE-----GVLPPLNEGDPLKLKELLPEQHF 462
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RY+E +LVK LEE GIGRPSTYAS + L +R Y + + +PE G +VS L
Sbjct: 463 TQPPPRYTEATLVKTLEEYGIGRPSTYASIMNTLVERKYARLDKKRFFPEDVGMVVSELL 522
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++F++ DY+FTA +E ELD VS G +WK LL D+W F + +L
Sbjct: 523 VNHFTKYVDYNFTASLEEELDRVSRGEKKWKPLLHDFWEPFQT---------------LL 567
Query: 949 EKTFGDSLFASLPNK--DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
++ G+ + L + D CP C + L+ K+ +FG F C+ +P C YI D
Sbjct: 568 KQKEGEVNKSDLTTEATDEICPECSK-PLVVKLGKFGK--FFACSGYPECKYIRPL---D 621
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASK--EKVLLKSGPYGFYV 1046
D++D V EP +I K ++L+K G +G Y+
Sbjct: 622 KDKKD-------VAEP-VISEEKCDKCGSQMLIKEGRFGKYL 655
>gi|333376359|ref|ZP_08468143.1| DNA topoisomerase TopA [Kingella kingae ATCC 23330]
gi|332968289|gb|EGK07363.1| DNA topoisomerase TopA [Kingella kingae ATCC 23330]
Length = 772
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 271/650 (41%), Positives = 381/650 (58%), Gaps = 36/650 (5%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++++VES K K ++ YLG +EVL S+GHVRDL + G+V P+D+F+M +++ S
Sbjct: 3 KNLLIVESPNKIKSVKKYLGGDFEVLASFGHVRDLIPKDGAVNPEDNFAMKYQIISKNSK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENI-TVARVVFHEITEA 468
H+ +I A AE++ LA+DPDREGEAI+WHI E+L+ + + + + RVVFHE+T
Sbjct: 63 HVDAIVAAAKEAEHIYLATDPDREGEAISWHIAEILKSKRGMKGVMDKIQRVVFHEVTPK 122
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+Q R +D NLV A RRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 123 GVQAAIQNPRSLDMNLVDAQQTRRALDYLVGFNLSPLLWKKIRYGLSAGRVQSPALRLIC 182
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYW++ LD SH T F A LTH+Q+ +L Q S+ I
Sbjct: 183 ERENEIKAFESQEYWSIH--LD---SHKGRT-KFSAKLTHWQNNKLEQFSLPDEASQASI 236
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ QV +K+ RK PY TST+QQDA KL F+ TM+ AQ+L+EG+ +
Sbjct: 237 LAALQGKTAQVADVTKKKATRKPAAPYTTSTMQQDAVRKLGFTTDRTMRTAQQLFEGIDV 296
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD + +S++A EIR I + G+ P + Y K KNAQEAHE
Sbjct: 297 GQG-AVGLITYMRTDSVTLSEDALTEIRHYIENKIGADFLPSSA-KMYKTKSKNAQEAHE 354
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM A VDI N E VFR
Sbjct: 355 AIRPTSVYRSPESVKPFLSADQFKLYQMIWQRTVACQMVDAKFDATTVDI-NVGEG-VFR 412
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ + F GF + Y++ + ++ ++ L + GD + + + +QH
Sbjct: 413 ATGQVLVFAGFLSVYQEGEDEEDAAEDQKK---------LPEMAVGDVVPVDNLYGEQHF 463
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP R++E +LVK LEE GIGRPSTYAS +K L+DR YV V+ R P G +V+ FL
Sbjct: 464 TQPPPRFNEATLVKALEEFGIGRPSTYASIIKTLKDREYVIVEQRRFQPTDTGEIVNKFL 523
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F + DY FTA +E +LD ++ G EW ++ +W F ++++
Sbjct: 524 TEHFEQYVDYDFTAKLEDQLDEIANGKREWIPVMDKFWKGFH--------------KQVV 569
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CG L K R AG F+ C +P C+Y
Sbjct: 570 EKEGIERAKFTTEELDETCPQCGNHKLQIKFGR--AGRFVACAGYPECSY 617
>gi|194099894|ref|YP_002003031.1| DNA topoisomerase I [Neisseria gonorrhoeae NCCP11945]
gi|193935184|gb|ACF31008.1| DNA topoisomerase I [Neisseria gonorrhoeae NCCP11945]
Length = 784
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 276/658 (41%), Positives = 381/658 (57%), Gaps = 42/658 (6%)
Query: 346 PPS-----GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMV 400
PPS K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M
Sbjct: 10 PPSRERQMAKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMK 69
Query: 401 WEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARV 460
+++ S H+ +I A AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RV
Sbjct: 70 YQLISRNGKHVDAIVAAAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRV 128
Query: 461 VFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQ 520
VFHEIT+ ++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQ
Sbjct: 129 VFHEITKNAVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQ 188
Query: 521 SAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIG 580
S AL LIC+RE EI F+ QEYWTV LD + S F A L + +L Q +
Sbjct: 189 SPALRLICERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLP 242
Query: 581 SHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQ 640
+ D+ +++ V K+ R P+ TST+QQDA KL F+ TM+ AQ
Sbjct: 243 NEAAQADVLKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQ 302
Query: 641 KLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKV 700
+LYEG+ + G A GLITYMRTD ++++DEA EIR I + G + P ++Y K
Sbjct: 303 QLYEGIDVGQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKS 360
Query: 701 KNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN 760
KNAQEAHEAIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI
Sbjct: 361 KNAQEAHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITV 420
Query: 761 ADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLG 820
VFR + F GF + YE+ + L + GD L +
Sbjct: 421 GKG--VFRVTGQVQTFAGFLSVYEESSDDEESEDGKK----------LPEMSEGDKLPVD 468
Query: 821 EVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFR 880
++ +QH T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P
Sbjct: 469 KLYGEQHFTTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDT 528
Query: 881 GRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLH 940
G +V+ FL+ +F++ DY FTA +E +LD ++ G W ++ +W F
Sbjct: 529 GDIVNKFLTEHFAQYVDYHFTAKLEDQLDEIADGKRRWIPVMDKFWKPF----------- 577
Query: 941 IHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
I QVE EK + + + +CP CGE L K + G F+ C +P C+Y
Sbjct: 578 IKQVE---EKEGIERAKFTTQELNETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 630
>gi|261380554|ref|ZP_05985127.1| DNA topoisomerase [Neisseria subflava NJ9703]
gi|284796522|gb|EFC51869.1| DNA topoisomerase [Neisseria subflava NJ9703]
Length = 768
Score = 491 bits (1263), Expect = e-135, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNS 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRYYIENKIGKEYLPSSA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEESEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIANGKRQWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|307107685|gb|EFN55927.1| hypothetical protein CHLNCDRAFT_145197 [Chlorella variabilis]
Length = 1269
Score = 491 bits (1263), Expect = e-135, Method: Compositional matrix adjust.
Identities = 314/858 (36%), Positives = 457/858 (53%), Gaps = 107/858 (12%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G +V++VES KA+ IQ +LG Y+VL SYGH+RDL AR GSV PD F+M W+V AA
Sbjct: 89 GPTVLLVESPAKARKIQDFLGPDYKVLASYGHIRDLPARGGSVDPDSGFAMKWQVLGAAE 148
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L +I A+ A L+LA+DPDREGEAI+WH+V+ LQ + A+ E+ T R+ F E+T+
Sbjct: 149 ARLPAIASAVRQASRLVLATDPDREGEAISWHLVQELQGRRAILESTTTQRITFTEVTKR 208
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ ALQ R+I LV AY+ARRALDYL GF++SP+LWRK+PG +SAGRVQS AL L+C
Sbjct: 209 AVLEALQRPRDISEPLVHAYMARRALDYLFGFHLSPMLWRKVPGARSAGRVQSVALRLVC 268
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE ID F+ +Y+TVEA L ++ A L Q A +
Sbjct: 269 EREAAIDAFQQHKYYTVEADLQLPGGSTIQ-----ARLAGVDGASPPQPGFPDQQAAAAV 323
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
++ +A F V + S R R+ P P+ TSTLQQ+A +L A+ TM+LAQ+LYE
Sbjct: 324 AARVAAARFTVREASSREQQRQPPPPFTTSTLQQEANKRLGLGASRTMQLAQQLYE---- 379
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
+G I+YMRTDG+ ++ A + +R +G+ + E R Y + KNAQEAHE
Sbjct: 380 -----SGHISYMRTDGVSLAPAAVEALRQAAAAEHGAQYVAAEA-RVYRSRSKNAQEAHE 433
Query: 709 AIRPTDIRRLPAMLSGLLDEDCL-----KLYSLIWSRTMACQMQPATVGQIQVDIGNADE 763
AIRPTD P + + L E + KLY + + D+ + D+
Sbjct: 434 AIRPTD----PLLTAEQLAEQGVERPAAKLYGWV---------------AVAADLASEDD 474
Query: 764 SIVFRSSCSRVEFLGFQAAYED-------VDAG--------------------------A 790
+ R++ S F GF AAY D D G +
Sbjct: 475 GLQLRATASASAFPGFLAAYFDPAAISAAADGGKAEDEAGAAQAEEEGEGEGEGEGAAVS 534
Query: 791 IRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIG 850
R + +E R A A L +++ G + + E +H T+PPARY+EGSLVK LEELGIG
Sbjct: 535 SRRRAQQEAARAAAVAGLAAIRRGQEVGVSEAAASEHETRPPARYTEGSLVKHLEELGIG 594
Query: 851 RPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDN 910
RPSTYA T+ R YV + R L+ E GR+++AFL YF + D+ FT+ +E +LD
Sbjct: 595 RPSTYAPTINA---RGYVRKEGRALHAEALGRVLTAFLQAYFPQYVDFGFTSSLEEQLDE 651
Query: 911 VSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVC 970
VS G TEW+ +L +W+ F+ + + V + + GD L +DR+CP C
Sbjct: 652 VSGGGTEWQDVLRGFWAPFTDTLDHVGGVPVTHVIDRMNEMVGDQLI----GEDRTCPSC 707
Query: 971 GEGTLIFKVSRFGAGYFIGCNQHPRCNY--------------IAKTLYGDDDEEDTLQRN 1016
G I VS+ F+GC+ +P C Y + K G+ +E+ ++
Sbjct: 708 GGQLSIKFVSKSKVPPFVGCSLYPSCKYSRPIQVDWTVEEPAVKKGTMGEGEEQMQAEKG 767
Query: 1017 TNVDE----PKLIGHHPASKEKVLLKSGPYGFYVQLG--EDRTGY----LPKRASVSHIK 1066
+ +L+G P+S V +++G YG YVQ G E+ G+ LP+ + H
Sbjct: 768 VALTGLSGYARLLGDDPSSGMPVFVRAGLYGPYVQRGNNEEEQGFRRQALPRLQHMQH-- 825
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+TL ALE+L P +LG +P G+ +++ + + G +R +VPK P ++
Sbjct: 826 --KVVTLALALEMLALPKDLGLNPATGESVLVSMGKFGPFIRCGALSRAVPKEYDPLKLS 883
Query: 1127 LEKALEFLSGKDVRRCGR 1144
L AL+ L+GK + GR
Sbjct: 884 LPDALQLLAGKTIYSTGR 901
>gi|385336811|ref|YP_005890758.1| DNA topoisomerase I [Neisseria gonorrhoeae TCDC-NG08107]
gi|317165354|gb|ADV08895.1| DNA topoisomerase I [Neisseria gonorrhoeae TCDC-NG08107]
Length = 768
Score = 491 bits (1263), Expect = e-135, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 379/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAAAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEESEDGKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + + +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELNETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|421539315|ref|ZP_15985477.1| DNA topoisomerase I [Neisseria meningitidis 93004]
gi|402321895|gb|EJU57366.1| DNA topoisomerase I [Neisseria meningitidis 93004]
Length = 768
Score = 491 bits (1263), Expect = e-135, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 377/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPDEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSSA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSVDQFKLYQMIWQRTVACQMMPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIANGKRQWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|218767194|ref|YP_002341706.1| DNA topoisomerase I [Neisseria meningitidis Z2491]
gi|121051202|emb|CAM07473.1| DNA topoisomerase I [Neisseria meningitidis Z2491]
Length = 768
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVANPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ +EYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAREYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W L+ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|268600053|ref|ZP_06134220.1| DNA topoisomerase I [Neisseria gonorrhoeae MS11]
gi|268584184|gb|EEZ48860.1| DNA topoisomerase I [Neisseria gonorrhoeae MS11]
Length = 768
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 377/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAAAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVANPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPDEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEESEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRRWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + + +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELNETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|254494745|ref|ZP_05107916.1| DNA topoisomerase I [Neisseria gonorrhoeae 1291]
gi|226513785|gb|EEH63130.1| DNA topoisomerase I [Neisseria gonorrhoeae 1291]
Length = 768
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAAAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPDEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEESEDGKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + + +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELNETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|241760437|ref|ZP_04758531.1| DNA topoisomerase [Neisseria flavescens SK114]
gi|241319106|gb|EER55599.1| DNA topoisomerase [Neisseria flavescens SK114]
Length = 768
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 377/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNS 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSSA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRRWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|268683221|ref|ZP_06150083.1| DNA topoisomerase I [Neisseria gonorrhoeae SK-92-679]
gi|268623505|gb|EEZ55905.1| DNA topoisomerase I [Neisseria gonorrhoeae SK-92-679]
Length = 768
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 378/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAAAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEESEDGKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRRWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + + +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELNETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|407717357|ref|YP_006838637.1| DNA topoisomerase I [Cycloclasticus sp. P1]
gi|407257693|gb|AFT68134.1| DNA topoisomerase I [Cycloclasticus sp. P1]
Length = 763
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 294/706 (41%), Positives = 417/706 (59%), Gaps = 59/706 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG + VL SYGHVRDL + G+V PD DF+M + + H
Sbjct: 3 ALVIVESPAKAKTIEKYLGKGFTVLASYGHVRDLVPKEGAVDPDHDFAMKYSLVERNQRH 62
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+++I A+ A+ L LA+DPDREGEAI+WH+ E+L+++ L + V RVVFHEIT+ SI
Sbjct: 63 VQAITKAMKKADELYLATDPDREGEAISWHVSELLKEKKLLKDK-PVHRVVFHEITKKSI 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A+Q RE+ ++V A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +R
Sbjct: 122 QKAIQEPRELSMDMVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIVER 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E+EI+ F +EYW++EA SF A LTH ++L Q S+ + +A I+
Sbjct: 182 ELEIEAFNSREYWSIEAATKAANQ------SFKAKLTHVDGEKLTQFSVENAADANKIKD 235
Query: 591 KINS--ANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
I + AN ++K ++ ++NP P+ TSTLQQ+A+ KL F+ TM++AQ+LYEGV
Sbjct: 236 DIVAVAANKLLVKKLQKKQRKRNPAAPFTTSTLQQEASRKLGFTTKKTMQIAQQLYEGVT 295
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ + GLITYMRTD ++++ EA EIR LI RYG + P++ P Y K KNAQEAH
Sbjct: 296 I-GSESIGLITYMRTDSVNLAAEAVDEIRQLIESRYGKENLPKQAP-VYKTKSKNAQEAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ R+P + G L D KLY LIW R +A QM A + + D+ + VF
Sbjct: 354 EAIRPSSAARIPDEIRGSLSNDQYKLYLLIWKRVVASQMVHALIDGVSADL-TCGKGYVF 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S V GF + Y + G KE+++N +L L+ G + L EV QH
Sbjct: 413 RATGSTVNKPGFMSVYLE---GKDDSKEDDDNKEK----MLPPLEEGALVDLQEVIANQH 465
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP RY E SLVK LEE GIGRPSTYAS + LQ+R+YV ++++ YP GR+V+ F
Sbjct: 466 FTEPPPRYGEASLVKALEEHGIGRPSTYASIISTLQNRDYVELETKRFYPTDVGRIVNKF 525
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L+ +F+ DY FTA +E LD VS G +W L+ +W F + I E
Sbjct: 526 LTQHFTNYVDYDFTAKLEDGLDAVSRGEMQWLPLMKTFWQPFKTL--------IDDKEVS 577
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFG-AGYFIGCNQHPRCNYIAKTLYGD 1006
++++ D +L K CP CG+ I R G G FIGC +P C+Y
Sbjct: 578 VQRS--DVTQEALEEK---CPECGKQLSI----RLGRNGRFIGCTDYPECSYT------- 621
Query: 1007 DDEEDTLQRNTNVD----EPKLIGHH--PASKEKVLLKSGPYGFYV 1046
RN N D EP+++ P + +++++G YG ++
Sbjct: 622 --------RNLNDDAASAEPEVVEGRKCPKCESNLIIRTGRYGKFI 659
>gi|429743422|ref|ZP_19276981.1| DNA topoisomerase I [Neisseria sp. oral taxon 020 str. F0370]
gi|429165479|gb|EKY07529.1| DNA topoisomerase I [Neisseria sp. oral taxon 020 str. F0370]
Length = 768
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 271/650 (41%), Positives = 379/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL ++G+V PD+ F+M +++ +
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKNGAVDPDNHFAMKYQLVARNA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH+ E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAEAKEAENIYLATDPDREGEAISWHLQEILKSKRGL-KNIHPKRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ RE++ NLV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAIAHPRELEINLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD +S S F A L F K+L Q + S T ++
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKSRS----KFTAKLVQFDGKKLEQFDMPSETAQAEV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ V K+ R P+ TST+QQDA KL + TM+ AQ+LYEG+ +
Sbjct: 235 LAALEGREAVVSAVEKKKRSRNPAAPFTTSTMQQDAVRKLGMTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPS-AAKQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI + VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLTADQFKLYQMIWQRTVACQMTPAKFDQTTVDIAVGEG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEEGSDDEESEESKK----------LPEMAEGDTLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD +++G EW ++ +W F +++
Sbjct: 521 TDHFAQYVDYHFTAKLEDQLDEIASGKREWVPVMDKFWKPFH--------------KQVA 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTEELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|296315166|ref|ZP_06865107.1| DNA topoisomerase [Neisseria polysaccharea ATCC 43768]
gi|296837975|gb|EFH21913.1| DNA topoisomerase [Neisseria polysaccharea ATCC 43768]
Length = 768
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 272/650 (41%), Positives = 377/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVANPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMMPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIAGGKRQWVPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CG L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGGHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|313667414|ref|YP_004047698.1| DNA topoisomerase I [Neisseria lactamica 020-06]
gi|313004876|emb|CBN86302.1| DNA topoisomerase I [Neisseria lactamica 020-06]
Length = 768
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 272/650 (41%), Positives = 377/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEESEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIAGGKRQWVPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CG L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGGHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|240017570|ref|ZP_04724110.1| DNA topoisomerase I [Neisseria gonorrhoeae FA6140]
Length = 768
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 377/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAAAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVANPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPDEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEESEDGKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRRWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + + +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELNETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|381402277|ref|ZP_09927150.1| DNA topoisomerase I [Kingella kingae PYKK081]
gi|380832736|gb|EIC12631.1| DNA topoisomerase I [Kingella kingae PYKK081]
Length = 772
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 271/650 (41%), Positives = 379/650 (58%), Gaps = 36/650 (5%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++++VES K K ++ YLG +EVL S+GHVRDL + G+V P+++F+M +++ S
Sbjct: 3 KNLLIVESPNKIKSVKKYLGGDFEVLASFGHVRDLIPKDGAVNPENNFAMKYQIISKNSK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENI-TVARVVFHEITEA 468
H+ +I A AE + LA+DPDREGEAI+WHI E+L+ + + + + RVVFHE+T
Sbjct: 63 HVDAIVAAAKEAEYIYLATDPDREGEAISWHIAEILKSKRGMKGVMDKIQRVVFHEVTPK 122
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+Q R +D NLV A RRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 123 GVQAAIQNPRSLDMNLVDAQQTRRALDYLVGFNLSPLLWKKIRYGLSAGRVQSPALRLIC 182
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYW++ LD SH T F A LTH+Q+ +L Q S+ I
Sbjct: 183 ERENEIKAFESQEYWSIH--LD---SHKGRT-KFSAKLTHWQNNKLEQFSLPDEASQASI 236
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ QV SK+ RK PY TST+QQDA KL F+ TM+ AQ+L+EG+ +
Sbjct: 237 LAALQGKTAQVADVSKKKATRKPAAPYTTSTMQQDAVRKLGFTTDRTMRTAQQLFEGIDV 296
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD + +S++A EIR I + G+ P + Y K KNAQEAHE
Sbjct: 297 GQG-AVGLITYMRTDSVTLSEDALTEIRHYIENKIGADFLPSSA-KMYKTKSKNAQEAHE 354
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM A VDI N E VFR
Sbjct: 355 AIRPTSVYRSPESVKPFLSADQFKLYQMIWQRTVACQMVDAKFDATTVDI-NVGEG-VFR 412
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ + F GF + Y++ + ++ ++ L + GD + + + +QH
Sbjct: 413 ATGQVLVFAGFLSVYQEGEDEEDAAEDQKK---------LPEMVVGDVIPVDNLYGEQHF 463
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP R++E +LVK LEE GIGRPSTYAS +K L+DR YV V+ R P G +V+ FL
Sbjct: 464 TQPPPRFNEATLVKALEEFGIGRPSTYASIIKTLKDREYVIVEQRRFQPTDTGEIVNKFL 523
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F + DY FTA +E +LD ++ G EW ++ +W F ++++
Sbjct: 524 TEHFEQYVDYDFTAKLEDQLDEIANGKREWIPVMDKFWKGFH--------------KQVV 569
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CG L K R AG F+ C +P C Y
Sbjct: 570 EKEGIERAKFTTEELDETCPQCGNHKLQIKFGR--AGRFVACAGYPECGY 617
>gi|421537907|ref|ZP_15984089.1| DNA topoisomerase I [Neisseria meningitidis 93003]
gi|402317944|gb|EJU53471.1| DNA topoisomerase I [Neisseria meningitidis 93003]
Length = 768
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 272/650 (41%), Positives = 377/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLSNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPS-AAKQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CG L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGGHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|261856672|ref|YP_003263955.1| DNA topoisomerase I [Halothiobacillus neapolitanus c2]
gi|261837141|gb|ACX96908.1| DNA topoisomerase I [Halothiobacillus neapolitanus c2]
Length = 834
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 307/824 (37%), Positives = 454/824 (55%), Gaps = 87/824 (10%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
+++V+VES KAK I+ YLG YEVL SYGHVRDL + G+V DF+M + +
Sbjct: 3 QTLVIVESPAKAKTIKKYLGPGYEVLASYGHVRDLIPKDGAVDTAHDFAMNYTLIDKNVR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +IK AL ++ L+LA+DPDREGEAI+WH+ E+L + L +N T RVVF+EIT+ +
Sbjct: 63 HVDAIKKALKSSDILLLATDPDREGEAISWHLRELLAEA-GLLKNKTAQRVVFYEITKKA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
++ A+ R++ +L+ A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LI +
Sbjct: 122 VQEAVAHPRDLSIDLINAQQARRALDYLVGFNLSPLLWKKINPGLSAGRVQSPALRLIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F PQEYWT+ A D + + + F A L ++ Q ++ + T+A+
Sbjct: 182 REAEIEAFNPQEYWTILA--DCQADRAAEKSRFNARLLTLDGQKAEQFTLTNETDAQSAR 239
Query: 590 QKI--NSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+I +A +++ ++ ++NP P + TSTLQQ+ KL SA+ M+LAQ+LYEGV
Sbjct: 240 SRILEAAAGTLTVRSVEKRERKRNPAPPFTTSTLQQEGVRKLGLSASRVMRLAQELYEGV 299
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ GT GLITYMRTD + +S++A +IR+ I ++YG+ + P P +Y K KNAQEA
Sbjct: 300 DIGAGTV-GLITYMRTDAVTLSEDALTQIRAHIGDKYGAAYLPA-SPNRYKTKSKNAQEA 357
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT P + L++D +LY +I+ R +A QM PA Q+ VD+ D+
Sbjct: 358 HEAIRPTSAAHTPDSVRAFLNKDQFRLYEMIFKRAVASQMTPAVYDQVSVDLAVNDQH-S 416
Query: 767 FRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
FR++ S ++F GF A Y ED D + +N+E+ R L L GD + L ++
Sbjct: 417 FRANGSTLKFPGFIALYREDEDDAS---GDNDEDRR------LPPLTVGDKIALNDIAAD 467
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PP R++E SLVK LEE GIGRPSTYAS + LQ R YV + R P GR+V+
Sbjct: 468 QHFTEPPPRFTEASLVKTLEEYGIGRPSTYASIISTLQAREYVLLDQRRFKPTDMGRVVN 527
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
FL+ YF ++ DY FTA +E +LD VS G +W L+ ++W+ F H ++
Sbjct: 528 GFLTDYFRDIVDYEFTAKLEDDLDAVSRGERDWVPLMREFWTPFHDRVE-----HTNENV 582
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
E G L P G+ + ++ RFG IG
Sbjct: 583 TRQEAAQGRELGID--------PKSGKPVSV-RLGRFGPFAQIGTK-------------- 619
Query: 1006 DDDEED----TLQRNTNV-----DE-------PKLIGHHPASKEKVLLKSGPYGFYVQLG 1049
DDEE +L+R+ ++ DE P+ +G P E V + G +G +V+ G
Sbjct: 620 -DDEEKPKFASLKRSQSIATITLDEALDLFQLPRKLGETPEG-EPVEVAIGRFGPFVKFG 677
Query: 1050 EDRTGYLPKRASVSHIKDVDSITLEDALELL---------RYPVNLGNHPKDGQPIMLRL 1100
+ AS+ D +I L ALE++ RY N + ++
Sbjct: 678 K-------MYASLGKDDDPYTIELPRALEIIEIKKLAEKNRYITQFDNG------VSVQN 724
Query: 1101 ARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKDVRRCGR 1144
R G + + A +PK+ P +TLE+ + L+ ++ R
Sbjct: 725 GRYGPYITDGKKNAKIPKDKDPKSLTLEECVALLAAAPEKKSAR 768
>gi|433468316|ref|ZP_20425754.1| DNA topoisomerase I [Neisseria meningitidis 98080]
gi|432206652|gb|ELK62656.1| DNA topoisomerase I [Neisseria meningitidis 98080]
Length = 768
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 272/650 (41%), Positives = 377/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + +
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQAGV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEESEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIANGKRQWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|255067821|ref|ZP_05319676.1| DNA topoisomerase [Neisseria sicca ATCC 29256]
gi|255047912|gb|EET43376.1| DNA topoisomerase [Neisseria sicca ATCC 29256]
Length = 790
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 272/650 (41%), Positives = 375/650 (57%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL ++G+V P+ DF+M +E+
Sbjct: 24 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKNGAVDPEHDFAMKYELIKRNA 83
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH+ E+L+ + L +NI RVVFHEIT+
Sbjct: 84 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLFEILKSKRGL-KNIKPQRVVFHEITKN 142
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 143 AVLDAVANPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 202
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 203 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 256
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 257 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 316
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 317 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPS-AAKQYKTKSKNAQEAHE 374
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 375 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 432
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 433 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 482
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 483 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 542
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G W ++ +W F I QVE
Sbjct: 543 TEHFAQYVDYHFTAKLEDQLDEIADGKRRWIPVMDKFWKPF-----------IKQVE--- 588
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 589 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 636
>gi|288575794|ref|ZP_05977590.2| DNA topoisomerase [Neisseria mucosa ATCC 25996]
gi|340363542|ref|ZP_08685872.1| DNA topoisomerase TopA [Neisseria macacae ATCC 33926]
gi|419795994|ref|ZP_14321568.1| DNA topoisomerase I [Neisseria sicca VK64]
gi|288567002|gb|EFC88562.1| DNA topoisomerase [Neisseria mucosa ATCC 25996]
gi|339885687|gb|EGQ75394.1| DNA topoisomerase TopA [Neisseria macacae ATCC 33926]
gi|385699947|gb|EIG30210.1| DNA topoisomerase I [Neisseria sicca VK64]
Length = 790
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 272/650 (41%), Positives = 375/650 (57%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL ++G+V P+ DF+M +E+
Sbjct: 24 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKNGAVDPEHDFAMKYELIKRNA 83
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH+ E+L+ + L +NI RVVFHEIT+
Sbjct: 84 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLFEILKSKRGL-KNIKPQRVVFHEITKN 142
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 143 AVLDAVANPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 202
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 203 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 256
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 257 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 316
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 317 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPS-AAKQYKTKSKNAQEAHE 374
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 375 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 432
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 433 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 482
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 483 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 542
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G W ++ +W F I QVE
Sbjct: 543 TEHFAQYVDYHFTAKLEDQLDEIADGKRRWIPVMDKFWKPF-----------IKQVE--- 588
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 589 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 636
>gi|268687542|ref|ZP_06154404.1| DNA topoisomerase I [Neisseria gonorrhoeae SK-93-1035]
gi|268627826|gb|EEZ60226.1| DNA topoisomerase I [Neisseria gonorrhoeae SK-93-1035]
Length = 768
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 272/650 (41%), Positives = 377/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V P + F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPGNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAAAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVANPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPDEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ +R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRIRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEESEDGKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRRWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + + +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELNETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|404491975|ref|YP_006716081.1| DNA topoisomerase I [Pelobacter carbinolicus DSM 2380]
gi|77544104|gb|ABA87666.1| DNA topoisomerase I [Pelobacter carbinolicus DSM 2380]
Length = 841
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 292/673 (43%), Positives = 385/673 (57%), Gaps = 41/673 (6%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
+S+V+VES KAK I+ +LG Y+VL SYGHVR L ++ GSV + +FS ++ V +
Sbjct: 2 AQSLVIVESPAKAKTIEKFLGPGYKVLASYGHVRALPSKQGSVDVEHNFSPLYHVLPESQ 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENIT---VARVVFHEI 465
H++ +K + LILA+DPDREGEAIAWH++E L + EN V RV FHEI
Sbjct: 62 KHIELLKKEAKKSRELILATDPDREGEAIAWHLLEAL----GIDENAKSPEVKRVTFHEI 117
Query: 466 TEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALS 525
T+ +I+ A+ I LV A AR LDYL+GFN+SP LW+K+ SAGRVQS AL
Sbjct: 118 TKGAIQEAISKPGHIARELVDAQQARSILDYLVGFNLSPFLWKKIRYGLSAGRVQSVALR 177
Query: 526 LICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEA 585
LIC+RE EI F+ +EYWT+E L ++ FPA L L + I +A
Sbjct: 178 LICEREKEIQAFEAREYWTIETRLATEQGSV-----FPARLYAVDGNSLGKFDINQEAQA 232
Query: 586 KDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
++ + I S FQV K K S R P+ TSTLQQ+A+ KL FSA TM +AQKLYEG
Sbjct: 233 LELVKAIGSEAFQVEKLKKTSKKRNPAAPFTTSTLQQEASRKLGFSARKTMTVAQKLYEG 292
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
+ + +G GLITYMRTD + +S A E R LI YG +A ++ PR + K KNAQE
Sbjct: 293 IDVGNGLE-GLITYMRTDSVALSQVATGEARELITRMYGEDYALDK-PRVFKNKAKNAQE 350
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEA+RPT + LP + L D KLY LIW RT+A QM A + VDI A E
Sbjct: 351 AHEAVRPTSLSNLPDQIKAHLSSDQFKLYRLIWQRTVASQMATAQLEATTVDI-RAGERF 409
Query: 766 VFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVEL 824
VFR+S V F GF Y ED D ++E+ DR E L L+ PL EV+
Sbjct: 410 VFRASGQVVRFPGFMKLYIEDTD-------KDEDQDRQEE-GTLPPLEQEQPLDCQEVQP 461
Query: 825 KQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMV 884
QH TQPP R++E SLVK LEE GIGRPSTYAS + L R YV ++ R Y E G +V
Sbjct: 462 SQHFTQPPPRFTEASLVKTLEEHGIGRPSTYASIINTLTTRKYVRLEKRAFYTEDVGMVV 521
Query: 885 SAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV 944
+ L ++F++ DY FTA +E +LD +S G EW+ +L D+W F S + I +
Sbjct: 522 NDLLVNHFNKYVDYDFTAQLEEDLDAISRGEREWQPVLKDFWEPFISRLK-EKETQISKQ 580
Query: 945 EKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
+ EKT DR CP CG+ L+ K+ R +G F+ C+ P C Y + L
Sbjct: 581 DVTTEKT------------DRICPECGK-PLVIKLGR--SGRFLACSGFPDCRY-TEPLA 624
Query: 1005 GDDDEEDTLQRNT 1017
G + EE + T
Sbjct: 625 GQEREEPVMSDQT 637
Score = 44.3 bits (103), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 966 SCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+CP CGEG L+ K SR+G F CN++P+C Y
Sbjct: 679 TCPQCGEGELMEKKSRYGK-IFYSCNRYPKCKY 710
>gi|225075476|ref|ZP_03718675.1| hypothetical protein NEIFLAOT_00481 [Neisseria flavescens
NRL30031/H210]
gi|224953195|gb|EEG34404.1| hypothetical protein NEIFLAOT_00481 [Neisseria flavescens
NRL30031/H210]
Length = 768
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 272/650 (41%), Positives = 376/650 (57%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V P + F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPGNGFAMKYQLISRNA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPDEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSSA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEESEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIANGKRQWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|349610706|ref|ZP_08890039.1| hypothetical protein HMPREF1028_02014 [Neisseria sp. GT4A_CT1]
gi|348609582|gb|EGY59318.1| hypothetical protein HMPREF1028_02014 [Neisseria sp. GT4A_CT1]
Length = 768
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 272/650 (41%), Positives = 375/650 (57%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL ++G+V P+ DF+M +E+
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKNGAVDPEHDFAMKYELIKRNA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH+ E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLFEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVANPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPS-AAKQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRRWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|298370608|ref|ZP_06981923.1| DNA topoisomerase [Neisseria sp. oral taxon 014 str. F0314]
gi|298281218|gb|EFI22708.1| DNA topoisomerase [Neisseria sp. oral taxon 014 str. F0314]
Length = 768
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 272/650 (41%), Positives = 375/650 (57%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL ++G+V P+ DF+M +E+
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLIPKNGAVDPEHDFAMKYELIKRNA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH+ E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLYEILKTKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVANPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-ATGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPS-AAKQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRRWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|114776899|ref|ZP_01451942.1| DNA topoisomerase I [Mariprofundus ferrooxydans PV-1]
gi|114552985|gb|EAU55416.1| DNA topoisomerase I [Mariprofundus ferrooxydans PV-1]
Length = 756
Score = 488 bits (1255), Expect = e-134, Method: Compositional matrix adjust.
Identities = 276/648 (42%), Positives = 384/648 (59%), Gaps = 36/648 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I+ YLG Y+VL SYGHVR + GSV P+ DF++ +EV
Sbjct: 3 AVVVVESPAKAKTIEKYLGKGYKVLASYGHVRAFPKKDGSVDPEQDFAIKYEVIPDKKKR 62
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
L +I AL A+ LILASD DREGEAIAWH+ E+L+++ +L + + R+ F+EIT+ +I
Sbjct: 63 LDAIDKALKSADTLILASDLDREGEAIAWHVAEVLRERGSLKDK-QIQRITFNEITKKAI 121
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A+ E+D LV A AR ALDYL+GF +SPLLWRK+ SAGRVQS AL LIC+R
Sbjct: 122 QDAVAHPGEMDMQLVDAQQARSALDYLVGFTLSPLLWRKVRSGLSAGRVQSVALRLICER 181
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E I EFKP+E+WT++ ++ D F A L ++L + +I AK + +
Sbjct: 182 EQHIREFKPKEFWTIDTTCQVAATN--DGVDFAAQLFAVDGEKLGKFAITDGVSAKTMAR 239
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
K+ A F V +K+ ++ P+IT+TLQ DA+ KL F+A TM++AQKLYEG+++ D
Sbjct: 240 KVEKATFHVDAVNKKQAHQQPAPPFITTTLQMDASRKLGFTARKTMQVAQKLYEGIEV-D 298
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTD L +S++A E+RS I + YG + P PR++ K KNAQEAHEAI
Sbjct: 299 GEPVGLITYMRTDSLTLSEDALAEMRSHIEQVYGDAYLP-AAPRRFKTKSKNAQEAHEAI 357
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT I R P L +LD D KLY LIW RT+A QM A + Q+ D+ + + R++
Sbjct: 358 RPTAIARTPDGLRSVLDPDEWKLYQLIWKRTLASQMAAAVLDQVSADL--VSDGLTLRAT 415
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S + F GF+ Y K +E ++ +L L GD + + + + KQH T+
Sbjct: 416 GSTLAFAGFRKLY---------IKGTDEPTAQDSERLLPPLTEGDAITIKQADAKQHFTE 466
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
P R+SE +LVK LE GIGRPSTYA+ L VL+ R YV ++ + P G V+ FL
Sbjct: 467 PKPRFSEATLVKALEADGIGRPSTYANILNVLRVRKYVEMEKKRFVPTDVGEWVTKFLVA 526
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
FS++ FTA +E LD V+ G WK LL ++WS F Q+L + E+ E+
Sbjct: 527 SFSDIIAPKFTAAIEDRLDAVARGEEGWKPLLREFWSPFK--IAVDQAL---EAERPAEE 581
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
T D CP CG+ I K+ R+G F+ C +P+C +
Sbjct: 582 T------------DEICPECGKPMAI-KLGRYGK--FMACTGYPKCKH 614
>gi|240015120|ref|ZP_04722033.1| DNA topoisomerase I [Neisseria gonorrhoeae DGI18]
gi|240122191|ref|ZP_04735153.1| DNA topoisomerase I [Neisseria gonorrhoeae PID24-1]
Length = 768
Score = 487 bits (1254), Expect = e-134, Method: Compositional matrix adjust.
Identities = 272/650 (41%), Positives = 376/650 (57%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V P + F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPGNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAAAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPDEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEESEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRRWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + + +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELNETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|268593751|ref|ZP_06127918.1| DNA topoisomerase I [Neisseria gonorrhoeae 35/02]
gi|268683115|ref|ZP_06149977.1| DNA topoisomerase I [Neisseria gonorrhoeae PID332]
gi|268547140|gb|EEZ42558.1| DNA topoisomerase I [Neisseria gonorrhoeae 35/02]
gi|268623399|gb|EEZ55799.1| DNA topoisomerase I [Neisseria gonorrhoeae PID332]
Length = 768
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 272/650 (41%), Positives = 376/650 (57%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V P + F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPGNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAAAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPDEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEESEDGKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRRWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + + +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELNETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|294671203|ref|ZP_06736057.1| hypothetical protein NEIELOOT_02911 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307141|gb|EFE48384.1| hypothetical protein NEIELOOT_02911 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 768
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 271/650 (41%), Positives = 375/650 (57%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL ++G+V P+ DF+M +E+
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLIPKNGAVDPEHDFAMKYELIKRNA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AE + LA+DPDREGEAI+WH+ E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAEKIYLATDPDREGEAISWHLYEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVANPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSSA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEESEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIANGKRQWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|385338985|ref|YP_005892858.1| DNA topoisomerase I (Omega-protein; relaxing enzyme; untwisting
enzyme; swivelase) [Neisseria meningitidis WUE 2594]
gi|433474592|ref|ZP_20431940.1| DNA topoisomerase I [Neisseria meningitidis 88050]
gi|433478876|ref|ZP_20436175.1| DNA topoisomerase I [Neisseria meningitidis 63041]
gi|433512476|ref|ZP_20469278.1| DNA topoisomerase I [Neisseria meningitidis 63049]
gi|433514657|ref|ZP_20471433.1| DNA topoisomerase I [Neisseria meningitidis 2004090]
gi|433516703|ref|ZP_20473457.1| DNA topoisomerase I [Neisseria meningitidis 96023]
gi|433518896|ref|ZP_20475623.1| DNA topoisomerase I [Neisseria meningitidis 65014]
gi|433523048|ref|ZP_20479721.1| DNA topoisomerase I [Neisseria meningitidis 97020]
gi|433527280|ref|ZP_20483893.1| DNA topoisomerase I [Neisseria meningitidis NM3652]
gi|433529371|ref|ZP_20485971.1| DNA topoisomerase I [Neisseria meningitidis NM3642]
gi|433531493|ref|ZP_20488062.1| DNA topoisomerase I [Neisseria meningitidis 2007056]
gi|433533595|ref|ZP_20490144.1| DNA topoisomerase I [Neisseria meningitidis 2001212]
gi|433540051|ref|ZP_20496508.1| DNA topoisomerase I [Neisseria meningitidis 63006]
gi|319411399|emb|CBY91810.1| DNA topoisomerase I (Omega-protein; relaxing enzyme; untwisting
enzyme; swivelase) [Neisseria meningitidis WUE 2594]
gi|432212652|gb|ELK68587.1| DNA topoisomerase I [Neisseria meningitidis 88050]
gi|432218850|gb|ELK74702.1| DNA topoisomerase I [Neisseria meningitidis 63041]
gi|432250231|gb|ELL05626.1| DNA topoisomerase I [Neisseria meningitidis 63049]
gi|432256321|gb|ELL11644.1| DNA topoisomerase I [Neisseria meningitidis 2004090]
gi|432256495|gb|ELL11817.1| DNA topoisomerase I [Neisseria meningitidis 96023]
gi|432256861|gb|ELL12172.1| DNA topoisomerase I [Neisseria meningitidis 65014]
gi|432262921|gb|ELL18152.1| DNA topoisomerase I [Neisseria meningitidis 97020]
gi|432267349|gb|ELL22527.1| DNA topoisomerase I [Neisseria meningitidis NM3652]
gi|432269513|gb|ELL24670.1| DNA topoisomerase I [Neisseria meningitidis 2007056]
gi|432270022|gb|ELL25169.1| DNA topoisomerase I [Neisseria meningitidis NM3642]
gi|432274148|gb|ELL29241.1| DNA topoisomerase I [Neisseria meningitidis 2001212]
gi|432278032|gb|ELL33076.1| DNA topoisomerase I [Neisseria meningitidis 63006]
Length = 768
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 271/650 (41%), Positives = 377/650 (58%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVANPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ +EYWTV LD + S F A L + +L Q + + D+
Sbjct: 181 ERENEIRAFEAREYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEESEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CG L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGGHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|329118702|ref|ZP_08247403.1| DNA topoisomerase TopA [Neisseria bacilliformis ATCC BAA-1200]
gi|327465205|gb|EGF11489.1| DNA topoisomerase TopA [Neisseria bacilliformis ATCC BAA-1200]
Length = 768
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 270/650 (41%), Positives = 376/650 (57%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL ++G+V PD+ F+M +++ +
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKNGAVDPDNQFAMKYQLVARNA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAEAKQAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIRPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ RE++ NLV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAIAHPRELEINLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + F A L F K+L Q + S T ++
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRG----KFTAKLMQFDGKKLEQFDMPSETAQAEV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ V K+ R P+ TST+QQDA KL + TM+ AQ+LYEG+ +
Sbjct: 235 LAALEGREAVVSAVEKKKRSRNPAAPFTTSTMQQDAVRKLGMTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPASA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLTADQFKLYQMIWQRTVACQMTPAKFDQTTVDIAVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSEEEEGEEGKK----------LPEMAEGDTLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G EW ++ +W F A+ I + +
Sbjct: 521 TDHFAQYVDYHFTAKLEDQLDEIANGKREWIPVMDKFWKPFQK--QVAEKEGIERAKFTT 578
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
E+ D +CP CGE L K + G F+ C +P C+Y
Sbjct: 579 EEL------------DETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|381170720|ref|ZP_09879874.1| DNA topoisomerase I [Xanthomonas citri pv. mangiferaeindicae LMG 941]
gi|380688772|emb|CCG36361.1| DNA topoisomerase I [Xanthomonas citri pv. mangiferaeindicae LMG 941]
Length = 830
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 307/802 (38%), Positives = 443/802 (55%), Gaps = 49/802 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PD+ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A GA+++ LA+DPDREGEAI+WHI E+L+++ L +N + RVVF EIT +
Sbjct: 63 HVEAIARAAKGADDIFLATDPDREGEAISWHIAEILKER-GLLKNKPMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMAKPRMIAGDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F P+EYW+++A H F+ A L ++ Q ++ G EA
Sbjct: 182 REEEIEAFIPREYWSIDAYC----RHPSQAFN--ARLIKLDGQKFEQFTVTDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L D + GLI+YMRTD +++S +A EIR +I +G+ P++ P Y K KNAQEA
Sbjct: 296 ALGDEGSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQ-PNAYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L ED +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLSEDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L +K GD + L + Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE--GKDTKSSEDEDEGRK-----LPLMKAGDNVPLDRIVTDQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS ++ LQ R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRFTEAALVKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA++E +LD VS G EW L+ +W F + +
Sbjct: 527 FLSGHFTRYVDYDFTANLEDDLDAVSRGEAEWIPLMEKFWGPFKEL--------VEDKKD 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
L+KT D+ + D PV G+ + ++ RFG IG + A G
Sbjct: 579 SLDKT--DAGSVRVLGTD---PVSGK-EVSARIGRFGPMVQIGTVEDEDKPTFASLRPGQ 632
Query: 1007 DDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+L+ + + P+ +G + V + G +G + + G + Y AS+
Sbjct: 633 SIYSISLEDALELFKMPRALGQD--KDQDVSVGIGRFGPFARRG---STY----ASLKKE 683
Query: 1066 KDVDSITLEDALELLRYPVNLGNH----PKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
D +I L A+ L+ + + DG I + R G + + +PK+ +
Sbjct: 684 DDPYTIDLARAVFLIEEKEEIARNRVIKEFDGSDIQVLNGRFGPYISDGKLNGKIPKDRE 743
Query: 1122 PNDVTLEKALEFL--SGKDVRR 1141
P +T E+ + L +GK VR+
Sbjct: 744 PASLTFEEVQQLLADTGKPVRK 765
>gi|294625228|ref|ZP_06703868.1| DNA topoisomerase III [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292600456|gb|EFF44553.1| DNA topoisomerase III [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
Length = 830
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 310/805 (38%), Positives = 441/805 (54%), Gaps = 55/805 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PD+ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A GA+++ LA+DPDREGEAI+WHI E+L+++ L + + RVVF EIT +
Sbjct: 63 HVEAIARAAKGADDIFLATDPDREGEAISWHIAEILKERGLLKDK-PMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMAKPRMIAGDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F P+EYW+++A H FS A L ++ Q ++ G EA
Sbjct: 182 REEEIEAFIPREYWSIDAHC----RHPSQAFS--ARLIKLDGQKFEQFTVTDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L D + GLI+YMRTD +++S +A EIR +I +G+ P++ P Y K KNAQEA
Sbjct: 296 ALGDEGSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQ-PNAYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L ED +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLSEDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L +K GD + L + Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE--GKDTKSSEDEDEGRK-----LPLMKAGDNVPLDRIVTDQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RY+E +LVK LEE GIGRPSTYAS ++ LQ R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRYTEAALVKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA++E +LD VS G EW L+ +W F + +
Sbjct: 527 FLSGHFTRYVDYDFTANLEDDLDAVSRGEAEWIPLMEKFWGPFKEL--------VEDKKD 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
L+KT D+ + D PV G+ + ++ RFG IG + A G
Sbjct: 579 SLDKT--DAGSVRVLGTD---PVSGK-EVSARIGRFGPMVQIGTVEDEDKPTFASLRPGQ 632
Query: 1007 D----DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
ED L+ P+ +G + V + G +G + + G + Y AS+
Sbjct: 633 SIYSISIEDALEL---FKMPRALGQD--KDQDVSVGIGRFGPFARRG---STY----ASL 680
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNH----PKDGQPIMLRLARAGFSVRHRRTIASVPK 1118
D +I L A+ L+ + + DG I + R G + + +PK
Sbjct: 681 KKEDDPYTIDLARAVFLIEEKEEIARNRVIKEFDGSDIQVLNGRFGPYISDGKLNGKIPK 740
Query: 1119 NMKPNDVTLEKALEFL--SGKDVRR 1141
+ +P +T E+ + L +GK VR+
Sbjct: 741 DREPASLTFEEVQQLLADTGKPVRK 765
>gi|268597810|ref|ZP_06131977.1| DNA topoisomerase I [Neisseria gonorrhoeae FA19]
gi|268604657|ref|ZP_06138824.1| DNA topoisomerase I [Neisseria gonorrhoeae PID1]
gi|268551598|gb|EEZ46617.1| DNA topoisomerase I [Neisseria gonorrhoeae FA19]
gi|268588788|gb|EEZ53464.1| DNA topoisomerase I [Neisseria gonorrhoeae PID1]
Length = 768
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 271/650 (41%), Positives = 375/650 (57%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V P + F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPGNGFAMKYQLISRNA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD + S F A L + +L Q + D+
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSHKGRS----KFTAKLAQYNGAKLEQFDLPDEAAQADV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEESEDGKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRRWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + + +CP CGE L K + G F+ C +P C+Y
Sbjct: 567 EKEGIERAKFTTQELNETCPKCGEHKLQIKFGKMGR--FVACAGYPECSY 614
>gi|189426315|ref|YP_001953492.1| DNA topoisomerase I [Geobacter lovleyi SZ]
gi|189422574|gb|ACD96972.1| DNA topoisomerase I [Geobacter lovleyi SZ]
Length = 758
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 298/700 (42%), Positives = 397/700 (56%), Gaps = 48/700 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ +LG Y VL S+GHVR L ++ GSV +DF + V + H+
Sbjct: 5 LVIVESPAKAKTIEKFLGSEYRVLASFGHVRALPSKQGSVDTANDFEPKYHVLPESKKHI 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+IK L GA+ L+LA+DPDREGEAI+WH++ L I + RVVFHEIT+ +I
Sbjct: 65 DAIKKELKGADRLLLATDPDREGEAISWHLLAALGLDK--KPKIPIQRVVFHEITKDAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+Q R+I +LV A AR LDYL+GFN+SP LW+K+ SAGRVQS AL L+C+RE
Sbjct: 123 HAVQHPRDIAIDLVDAQQARSILDYLVGFNLSPFLWKKIRYGLSAGRVQSVALRLVCERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI F QEYWT+ A L+K+ +L A L K+L + I A ++
Sbjct: 183 KEIQAFVDQEYWTIGAKLEKQGGQTLK-----AGLVAVDGKKLGKFDIPDQKSADALKNA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I +V +++ M R P+ TSTLQQ+A+ KL FSA TM AQKLYEGV + +G
Sbjct: 238 IAQGKAEVASVTRKEMKRNPAPPFTTSTLQQEASRKLGFSAKKTMSTAQKLYEGVAIGEG 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD +++S +A K+ LI YG +A + PR Y K KNAQEAHEAIR
Sbjct: 298 GTVGLITYMRTDSVNLSAQALKDAHDLISVAYGKEYALAK-PRFYKNKSKNAQEAHEAIR 356
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI---GNADESIVFR 768
PT + + PA L L D KLY LIW RT+ACQM A + Q VDI G +S + R
Sbjct: 357 PTYLDKTPAELKKYLTPDLFKLYELIWKRTVACQMAEALLDQTSVDIAVSGQKTDSFILR 416
Query: 769 SSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S + F GF Y E VD E+EE + L +L G+ L L EV +QH
Sbjct: 417 ATGSVIRFPGFMKLYIEGVD------DEDEEKE-----GTLPALDEGEALKLLEVLPEQH 465
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RY+E +LVK LEE GIGRPSTYASTL L +R Y + + +PE G +V+
Sbjct: 466 FTQPPPRYTEATLVKTLEEYGIGRPSTYASTLNTLVERKYARLDKKRFFPEDVGMVVNDL 525
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L+ +F + DY+FTA +E ELD VS G +WK LL ++W+ F S + Q E
Sbjct: 526 LTAHFPKYVDYNFTAGLEEELDQVSRGEKQWKPLLREFWNPFISL--------LKQKEGE 577
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPR-CNYIAKTLYGD 1006
++K D L + + +CP CG+ L K+ + G FI C C Y + L
Sbjct: 578 VKK---DDL--TTETLEEACPECGK-PLAIKLGK--RGKFIACTGFKEGCKY-TRNLENS 628
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYV 1046
EE V E K + +L+KSG YG Y+
Sbjct: 629 GTEEAA---EPEVSEEKC----DKCGQPMLIKSGRYGKYL 661
>gi|261400043|ref|ZP_05986168.1| DNA topoisomerase [Neisseria lactamica ATCC 23970]
gi|269210266|gb|EEZ76721.1| DNA topoisomerase [Neisseria lactamica ATCC 23970]
Length = 768
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 271/650 (41%), Positives = 375/650 (57%), Gaps = 37/650 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL +SG+V PD+ F+M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I AEN+ LA+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYWTV LD ++ S F A L + +L Q + + +
Sbjct: 181 ERENEIRAFEAQEYWTVH--LDSRKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQAGV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
++ V K+ R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ +
Sbjct: 235 LKEFEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD ++++DEA EIR I + G + P ++Y K KNAQEAHE
Sbjct: 295 GHG-AIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI VFR
Sbjct: 353 AIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMMPAKFDQTTVDITVGKG--VFR 410
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ F GF + YE+ + L + GD L + ++ +QH
Sbjct: 411 VTGQVQTFAGFLSVYEESSDDEESEDSKK----------LPEMSEGDKLPVDKLYGEQHF 460
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PP RY+E +LVK LEE GIGRPSTYAS + L+DR YVT++ + P G +V+ FL
Sbjct: 461 TTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFL 520
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ +F++ DY FTA +E +LD ++ G +W ++ +W F I QVE
Sbjct: 521 TEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPVMDKFWKPF-----------IKQVE--- 566
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK + + D +CP CG L K + G F+ C +P C Y
Sbjct: 567 EKEGIERAKFTTQELDETCPKCGGHKLQIKFGKMGR--FVACAGYPECGY 614
>gi|226942056|ref|YP_002797130.1| DNA topoisomerase I [Laribacter hongkongensis HLHK9]
gi|226716983|gb|ACO76121.1| TopA [Laribacter hongkongensis HLHK9]
Length = 775
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 278/650 (42%), Positives = 383/650 (58%), Gaps = 38/650 (5%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++++VES +KAK ++ YLG +EVL SYGHVRDL ++G+V P+ DF+M +++ + H
Sbjct: 4 NLLIVESPSKAKPLKKYLGADFEVLASYGHVRDLVPKNGAVDPEHDFAMKYQIIAKNAKH 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +I A+ A+N+ LA+DPDREGEAI+WH++++LQ + L + V RVVFHEIT+ ++
Sbjct: 64 VDAIASAVREADNIYLATDPDREGEAISWHLLQILQSKKLLKDK-NVQRVVFHEITQNAV 122
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R I LV A ARRALDYL+GF +SPLLW+K+ SAGRVQS AL LIC+R
Sbjct: 123 LDAVAHPRNILQELVDAQQARRALDYLVGFKLSPLLWKKIRRGLSAGRVQSPALRLICER 182
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F+ +EYW+V LD + F A LT + ++L+Q I T I
Sbjct: 183 EAEIRAFETREYWSVH--LDSHKGRQ----KFSARLTDWLGRKLDQFDIPDETSQAGILA 236
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ V K+ R P+ TSTLQQ+A KL + TM+ AQ+LYEGV +
Sbjct: 237 ALAGKPASVTAVEKKKKSRSPAAPFTTSTLQQEAVRKLGMTTDRTMRTAQQLYEGVDVGQ 296
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
G GLITYMRTD + +S++A EIR I E + + + P+ P Y K KNAQEAHEAI
Sbjct: 297 GQV-GLITYMRTDAVVLSNDALTEIRYYIGEHFDADYLPK-SPVSYKNKSKNAQEAHEAI 354
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT I R P + L + KLY++IW RT+ACQM PA VDI D VFR+S
Sbjct: 355 RPTSIFRTPESVKPFLTPEQFKLYTMIWKRTLACQMAPAKFDTTAVDITVGDG--VFRAS 412
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
+ F GF A Y++ +++ R L L+ GD L + ++ +QH TQ
Sbjct: 413 GQVLTFPGFIAVYQEDKDSDDAAAGDDDEAR------LPVLEVGDELPVDKLYGEQHFTQ 466
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE SLVK LEE GIGRPSTYAS +K L+DR YVT++ + P G +V+ FL+
Sbjct: 467 PPPRYSEASLVKALEEYGIGRPSTYASIIKTLKDREYVTLEKKRFEPTDTGDIVNKFLTE 526
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + DY+FTA +E +LD++S G +W +L +W F +K LE+
Sbjct: 527 HFEQYVDYNFTARLEDQLDDISNGKRQWVPVLDSFWQGF---------------KKQLEE 571
Query: 951 TFGDSLF-ASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNY 998
G S + D +CP CG+ I RFG G FIGC +P C+Y
Sbjct: 572 KEGISRAEVTTQQLDEACPKCGKPLNI----RFGKRGRFIGCTGYPECDY 617
Score = 43.5 bits (101), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 920 GLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKV 979
G LV RF + CA +E LEK + +CPVC G L+ K
Sbjct: 652 GQLVIKKGRFGKFIGCANYPKCKHIEP-LEKPRDTGV---------TCPVCKTGHLVEKK 701
Query: 980 SRFGAGYFIGCNQHPRCNY 998
SR+G F CN +P+C Y
Sbjct: 702 SRYGK-LFYSCNTYPKCTY 719
>gi|21244531|ref|NP_644113.1| DNA topoisomerase I [Xanthomonas axonopodis pv. citri str. 306]
gi|21110203|gb|AAM38649.1| DNA topoisomerase I [Xanthomonas axonopodis pv. citri str. 306]
Length = 830
Score = 484 bits (1246), Expect = e-133, Method: Compositional matrix adjust.
Identities = 306/802 (38%), Positives = 442/802 (55%), Gaps = 49/802 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PD+ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A GA+++ LA+DPDREGEAI+WHI E+L+++ L + + RVVF EIT +
Sbjct: 63 HVEAIARAAKGADDIFLATDPDREGEAISWHIAEILKERGLLKDK-PMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMAKPRMIAGDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F P+EYW+++A H F+ A L ++ Q ++ G EA
Sbjct: 182 REEEIEAFIPREYWSIDAHC----RHPSQAFN--ARLIKLDGQKFEQFTVTDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L D + GLI+YMRTD +++S +A EIR +I +G+ P++ P Y K KNAQEA
Sbjct: 296 ALGDEGSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQ-PNAYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L ED +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLSEDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L +K GD + L + Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE--GKDTKSSEDEDEGRK-----LPLMKAGDNVPLDRIVTDQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS ++ LQ R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRFTEAALVKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA++E +LD VS G EW L+ +W F + +
Sbjct: 527 FLSGHFTRYVDYDFTANLEDDLDAVSRGEAEWIPLMEKFWGPFKEL--------VEDKKD 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
L+KT D+ + D PV G+ + ++ RFG IG + A G
Sbjct: 579 SLDKT--DAGSVRVLGTD---PVSGK-EVSARIGRFGPMVQIGTVEDEDKPTFASLRPGQ 632
Query: 1007 DDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+L+ + + P+ +G + V + G +G + + G + Y AS+
Sbjct: 633 SIYSISLEDALELFKMPRALGQD--KDQDVSVGIGRFGPFARRG---STY----ASLKKE 683
Query: 1066 KDVDSITLEDALELLRYPVNLGNH----PKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
D +I L A+ L+ + + DG I + R G + + +PK+ +
Sbjct: 684 DDPYTIDLARAIFLIEEKEEIARNRVIKEFDGSDIQVLNGRFGPYISDGKLNGKIPKDRE 743
Query: 1122 PNDVTLEKALEFL--SGKDVRR 1141
P +T E+ + L +GK VR+
Sbjct: 744 PASLTFEEVQQLLADTGKPVRK 765
>gi|352090160|ref|ZP_08954332.1| DNA topoisomerase I [Rhodanobacter sp. 2APBS1]
gi|351677538|gb|EHA60686.1| DNA topoisomerase I [Rhodanobacter sp. 2APBS1]
Length = 833
Score = 484 bits (1245), Expect = e-133, Method: Compositional matrix adjust.
Identities = 314/814 (38%), Positives = 438/814 (53%), Gaps = 63/814 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES KAK I YLG ++VL SYGHVRDL + G+V + F+M +E+
Sbjct: 2 AKNLLIVESPAKAKTINKYLGKDFQVLASYGHVRDLKPKEGAVDTEHGFAMAYEIIERNE 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A A+++ LA+D DREGEAI+WHI E+L+++ L + + RVVF EIT
Sbjct: 62 KHVDAIAKAAKLADDIYLATDLDREGEAISWHISEILKER-GLTKGKQLHRVVFSEITPK 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+IK A+ A R++ +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I
Sbjct: 121 AIKAAVAAPRQLSHDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEA--- 585
+RE EI+ FK +EYWT+EA L E F A L+ K+ Q + S +A
Sbjct: 181 EREEEIEAFKAREYWTIEAQLKHAEG------DFAARLSRLNGKKFEQFDLTSEADAHAA 234
Query: 586 KDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
+D ++ V + S + R+ P+ TSTLQQ+AA KL F+ + TMK+AQ LYEG
Sbjct: 235 RDALKQAARGRLTVSEVSSKERKRRPAAPFTTSTLQQEAARKLGFTTSRTMKVAQGLYEG 294
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
V L GLITYMRTD + ++A E+R LI +G H P+ P+ Y K KNAQE
Sbjct: 295 VALGSEGNVGLITYMRTDSTMLGEDAVAELRQLIARDFGGHALPD-APQVYKTKSKNAQE 353
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQV-----DIGN 760
AHEAIRPT P ++ L++D KLY LIW RT+ACQM AT+ + V D+
Sbjct: 354 AHEAIRPTSAMHTPKSVAAFLNDDQRKLYELIWKRTVACQMIHATLNTVTVEFAVRDVAG 413
Query: 761 ADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLG 820
D + FRSS + V GF A YE+ R ++N E+D + L L + + L
Sbjct: 414 GDAA--FRSSGTTVVDPGFLAVYEEG-----RDQKNAEDD--DEGRRLPRLAVDEQVPLH 464
Query: 821 EVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFR 880
++ QH T+PP RYSE SLVK LEE GIGRPSTYAS ++VLQ+R YV + SR P
Sbjct: 465 DIVADQHFTEPPPRYSEASLVKALEEYGIGRPSTYASIIQVLQNREYVFLDSRRFKPTDV 524
Query: 881 GRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLH 940
GR VS FL+ +FS DY FTA +E ELD VS G W L+ +W F
Sbjct: 525 GRAVSKFLTQHFSRYVDYDFTARLEDELDAVSRGEEAWVPLMQRFWQPFK---------- 574
Query: 941 IHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
QVE+ E D A+ + S P G+ + ++ RFG IG A
Sbjct: 575 -QQVEEKTESV--DRSEATGARELGSDPKTGKPVSV-RLGRFGPYAAIGTKDDADKPTFA 630
Query: 1001 KTLYGDDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKR 1059
G TL + + P+ +G P + E+V + G +G +V+ G P+
Sbjct: 631 SLRPGQSMHTITLAEALELFKLPRQLGSAP-NGEEVSVAIGRFGPFVKQGGTYASLKPE- 688
Query: 1060 ASVSHIKDVDSITLEDALELL---------RYPVNLGNHPKDGQPIMLRLARAGFSVRHR 1110
D +I L AL+++ R ++ GN + + R G +
Sbjct: 689 ------DDPYTIELPRALQIVQEKLEMLANRLILDFGNG------VQVLNGRYGAYITDG 736
Query: 1111 RTIASVPKNMKPNDVTLEKALEFLSGKDVRRCGR 1144
A +PK +P ++T + LE L+ R+ GR
Sbjct: 737 EKNARIPKEQEPKELTEAQCLELLAAAPARKPGR 770
>gi|294664411|ref|ZP_06729768.1| DNA topoisomerase III [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|292605817|gb|EFF49111.1| DNA topoisomerase III [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
Length = 830
Score = 484 bits (1245), Expect = e-133, Method: Compositional matrix adjust.
Identities = 310/805 (38%), Positives = 439/805 (54%), Gaps = 55/805 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PD+ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A GA+++ LA+DPDREGEAI+WHI E+L+++ L + + RVVF EIT +
Sbjct: 63 HVEAIARAAKGADDIFLATDPDREGEAISWHIAEILKERGLLKDK-PMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMAKPRMIAGDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F P+EYW++ A H FS A L ++ Q ++ G EA
Sbjct: 182 REEEIEAFIPREYWSINAHC----RHPSQAFS--ARLIKLDGQKFEQFTVTDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L D + GLI+YMRTD +++S +A EIR +I +G+ P++ P Y K KNAQEA
Sbjct: 296 ALGDEGSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQ-PNAYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L ED +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLSEDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L +K GD + L + Q
Sbjct: 414 FRASGTTVVVPGFLAMYEE--GKDTKSSEDEDEGRK-----LPLMKAGDNVPLDRIVTDQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RY+E +LVK LEE GIGRPSTYAS ++ LQ R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRYTEAALVKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA++E +LD VS G EW L+ +W F + +
Sbjct: 527 FLSGHFTRYVDYDFTANLEDDLDAVSRGEAEWIPLMEKFWGPFKEL--------VEDKKD 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
L+KT D+ + D PV G+ + ++ RFG IG + A G
Sbjct: 579 SLDKT--DAGSVRVLGTD---PVSGK-EVSARIGRFGPMVQIGTVEDEDKPTFASLRPGQ 632
Query: 1007 D----DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
ED L+ P+ +G + V + G +G + + G + Y AS+
Sbjct: 633 SIYSISIEDALEL---FKMPRALGQD--KDQDVSVGIGRFGPFARRG---STY----ASL 680
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNH----PKDGQPIMLRLARAGFSVRHRRTIASVPK 1118
D +I L A+ L+ + + DG I + R G + + +PK
Sbjct: 681 KKEDDPYTIDLARAVFLIEEKEEIARNRVIKEFDGSDIQVLNGRFGPYISDGKLNGKIPK 740
Query: 1119 NMKPNDVTLEKALEFL--SGKDVRR 1141
+P +T E+ + L +GK VR+
Sbjct: 741 EREPASLTFEEVQQLLADTGKPVRK 765
>gi|390990469|ref|ZP_10260754.1| DNA topoisomerase I [Xanthomonas axonopodis pv. punicae str. LMG 859]
gi|372554792|emb|CCF67729.1| DNA topoisomerase I [Xanthomonas axonopodis pv. punicae str. LMG 859]
Length = 830
Score = 484 bits (1245), Expect = e-133, Method: Compositional matrix adjust.
Identities = 306/802 (38%), Positives = 442/802 (55%), Gaps = 49/802 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PD+ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A GA+++ LA+DPDREGEAI+WHI E+L+++ L + + RVVF EIT +
Sbjct: 63 HVEAIARAAKGADDIFLATDPDREGEAISWHIAEILKERGLLKDK-PMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMAKPRMIAGDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F P+EYW+++A H F+ A L ++ Q ++ G EA
Sbjct: 182 REEEIEAFIPREYWSIDAHC----RHPSQAFN--ARLIKLDGQKFEQFTVTDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L D + GLI+YMRTD +++S +A EIR +I +G+ P++ P Y K KNAQEA
Sbjct: 296 ALGDEGSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQ-PNAYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L ED +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLSEDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L +K GD + L + Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE--GKDTKSSEDEDEGRK-----LPLMKAGDNVPLDRIVTDQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS ++ LQ R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRFTEAALVKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA++E +LD VS G EW L+ +W F + +
Sbjct: 527 FLSGHFTRYVDYDFTANLEDDLDAVSRGEAEWIPLMEKFWGPFKEL--------VEDKKD 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
L+KT D+ + D PV G+ + ++ RFG IG + A G
Sbjct: 579 SLDKT--DAGSVRVLGTD---PVSGK-EVSARIGRFGPMVQIGTVEDEDKPTFASLRPGQ 632
Query: 1007 DDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+L+ + + P+ +G + V + G +G + + G + Y AS+
Sbjct: 633 SIYSISLEDALELFKMPRALGQD--KDQDVSVGIGRFGPFARRG---STY----ASLKKE 683
Query: 1066 KDVDSITLEDALELLRYPVNLGNH----PKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
D +I L A+ L+ + + DG I + R G + + +PK+ +
Sbjct: 684 DDPYTIDLARAVFLIEEKEEIARNRVIKEFDGSDIQVLNGRFGPYISDGKLNGKIPKDRE 743
Query: 1122 PNDVTLEKALEFL--SGKDVRR 1141
P +T E+ + L +GK VR+
Sbjct: 744 PASLTFEEVQQLLADTGKPVRK 765
>gi|418515530|ref|ZP_13081710.1| DNA topoisomerase I [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|410707828|gb|EKQ66278.1| DNA topoisomerase I [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 830
Score = 484 bits (1245), Expect = e-133, Method: Compositional matrix adjust.
Identities = 306/802 (38%), Positives = 442/802 (55%), Gaps = 49/802 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PD+ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A GA+++ LA+DPDREGEAI+WHI E+L+++ L + + RVVF EIT +
Sbjct: 63 HVEAIARAAKGADDIFLATDPDREGEAISWHIAEILKERGLLKDK-PMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMAKPRMIAGDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F P+EYW+++A H F+ A L ++ Q ++ G EA
Sbjct: 182 REEEIEAFIPREYWSIDAHC----RHPSQAFN--ARLIKLDGQKFEQFTVTDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L D + GLI+YMRTD +++S +A EIR +I +G+ P++ P Y K KNAQEA
Sbjct: 296 ALGDEGSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQ-PNAYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L ED +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLSEDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L +K GD + L + Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE--GKDTKSSEDEDEGRK-----LPLMKAGDNVPLDRIVTDQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS ++ LQ R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRFTEAALVKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA++E +LD VS G EW L+ +W F + +
Sbjct: 527 FLSGHFTRYVDYDFTANLEDDLDAVSRGEAEWIPLMEKFWGPFKEL--------VEDKKD 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
L+KT D+ + D PV G+ + ++ RFG IG + A G
Sbjct: 579 SLDKT--DAGSVRVLGTD---PVSGK-EVSARIGRFGPMVQIGTVEDEDKPTFASLRPGQ 632
Query: 1007 DDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+L+ + + P+ +G + V + G +G + + G + Y AS+
Sbjct: 633 SIYSISLEDALELFKMPRALGQD--KDQDVSVGIGRFGPFARRG---STY----ASLKKE 683
Query: 1066 KDVDSITLEDALELLRYPVNLGNH----PKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
D +I L A+ L+ + + DG I + R G + + +PK+ +
Sbjct: 684 DDPYTIDLARAVFLIEEKEEIARNRVIKEFDGSDIQVLNGRFGPYISDGKLNGKIPKDRE 743
Query: 1122 PNDVTLEKALEFL--SGKDVRR 1141
P +T E+ + L +GK VR+
Sbjct: 744 PASLTFEEVQQLLADTGKPVRK 765
>gi|389808839|ref|ZP_10204975.1| DNA topoisomerase I [Rhodanobacter thiooxydans LCS2]
gi|388442422|gb|EIL98618.1| DNA topoisomerase I [Rhodanobacter thiooxydans LCS2]
Length = 833
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 315/812 (38%), Positives = 440/812 (54%), Gaps = 65/812 (8%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES KAK I YLG ++VL SYGHVRDL + G+V + DF+M +EV
Sbjct: 2 AKNLLIVESPAKAKTINKYLGKDFQVLASYGHVRDLKPKEGAVDTEHDFAMSYEVIERNQ 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+++I A A+++ LA+D DREGEAI+WHI E+L+++ L + + RVVF EIT
Sbjct: 62 KHVEAIAKAAREADDIYLATDLDREGEAISWHISEILKER-GLTKGKQLHRVVFSEITPK 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+IK A+ A R++ +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I
Sbjct: 121 AIKAAVAAPRQLSHDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI----GSHTE 584
+RE EI+ FK +EYWTVEA L E F A L+ K+ Q + G+H
Sbjct: 181 EREDEIEAFKAREYWTVEAQLRHAEG------DFTARLSRLNGKKFEQFDLTSEAGAHA- 233
Query: 585 AKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYE 644
A+D ++ V + S + R+ P+ TSTLQQ+AA KL F+ + TMK+AQ LYE
Sbjct: 234 ARDALKQAARGRLTVSEVSSKERKRRPAAPFTTSTLQQEAARKLGFTTSRTMKVAQGLYE 293
Query: 645 GVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQ 704
GV L GLITYMRTD + ++A E+R LI +G H P+ P+ Y K KNAQ
Sbjct: 294 GVALGSEGNVGLITYMRTDSTMLGEDAVAELRQLIARDFGGHALPD-APQVYKTKSKNAQ 352
Query: 705 EAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQV-----DIG 759
EAHEAIRPT P ++ L++D KLY LIW RT+ACQM AT+ + V D+
Sbjct: 353 EAHEAIRPTSAMHTPKSVAAFLNDDQRKLYELIWKRTVACQMIHATLNTVTVEFAVRDVA 412
Query: 760 NADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYL 819
D + FRSS + V GF A YE+ R ++N E+D + L L + + L
Sbjct: 413 GGDAA--FRSSGTTVVAPGFLAVYEEG-----RDQKNAEDD--DEGRRLPRLAVDEQVPL 463
Query: 820 GEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEF 879
++ QH T+PP RYSE SLVK LEE GIGRPSTYAS ++VLQ+R YV + SR P
Sbjct: 464 HDIVADQHFTEPPPRYSEASLVKALEEYGIGRPSTYASIIQVLQNREYVFLDSRRFKPTD 523
Query: 880 RGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSL 939
GR VS FL+ +F+ DY FTA +E ELD VS G W L+ +W F
Sbjct: 524 VGRAVSKFLTQHFTRYVDYDFTAKLEDELDAVSRGEEAWVPLMQRFWQPFK--------- 574
Query: 940 HIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYI 999
QVE+ E D A+ + S P G+ + ++ RFG IG
Sbjct: 575 --QQVEEKTESV--DRSEATGARELGSDPKTGKPVSV-RLGRFGPYAAIGTKDDADKPTF 629
Query: 1000 AKTLYGDDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPK 1058
A G TL + + P+ +G P + E+V + G +G +V+ G P+
Sbjct: 630 ASLRPGQSMHTITLAEALELFKLPRQLGSAP-NGEEVSVAIGRFGPFVKQGGTYASLKPE 688
Query: 1059 RASVSHIKDVDSITLEDALELL---------RYPVNLGNHPKDGQPIMLRLARAGFSVRH 1109
D +I L AL+++ R ++ GN + + R G +
Sbjct: 689 -------DDPYTIELPRALQIVQEKLEMLANRLILDFGNG------VQVLNGRYGAYITD 735
Query: 1110 RRTIASVPKNMKPNDVTLEKALEFLSGKDVRR 1141
A +PK +P ++T + L+ L+ VR+
Sbjct: 736 GEKNARIPKEQEPKELTEAQCLQLLAAAPVRK 767
>gi|389799089|ref|ZP_10202093.1| DNA topoisomerase I [Rhodanobacter sp. 116-2]
gi|388443714|gb|EIL99851.1| DNA topoisomerase I [Rhodanobacter sp. 116-2]
Length = 833
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 313/814 (38%), Positives = 438/814 (53%), Gaps = 63/814 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES KAK I YLG ++VL SYGHVRDL + G+V + F+M +E+
Sbjct: 2 AKNLLIVESPAKAKTINKYLGKDFQVLASYGHVRDLKPKEGAVDTEHGFAMAYEIIERNE 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A A+++ LA+D DREGEAI+WHI E+L+++ L + + RVVF EIT
Sbjct: 62 KHVDAIAKAAKLADDIYLATDLDREGEAISWHISEILKER-GLTKGKQLHRVVFSEITPK 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+IK A+ A R++ +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I
Sbjct: 121 AIKAAVAAPRQLSHDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEA--- 585
+RE EI+ FK +EYWT+EA L E F A L+ K+ Q + S +A
Sbjct: 181 EREEEIEAFKAREYWTIEAQLKHAEG------DFAARLSRLNGKKFEQFDLTSEADAHAA 234
Query: 586 KDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
+D ++ V + S + R+ P+ TSTLQQ+AA KL F+ + TMK+AQ LYEG
Sbjct: 235 RDALKQAARGRLTVSEVSSKERKRRPAAPFTTSTLQQEAARKLGFTTSRTMKVAQGLYEG 294
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
V L GLITYMRTD + ++A E+R LI +G H P+ P+ Y K KNAQE
Sbjct: 295 VALGSEGNVGLITYMRTDSTMLGEDAVAELRQLIARDFGGHALPD-APQVYKTKSKNAQE 353
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQV-----DIGN 760
AHEAIRPT P ++ L++D KLY LIW RT+ACQM AT+ + V D+
Sbjct: 354 AHEAIRPTSAMHTPKSVAAFLNDDQRKLYELIWKRTVACQMIHATLNTVTVEFAVRDVAG 413
Query: 761 ADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLG 820
D + FRSS + V GF A YE+ R ++N E+D + L L + + L
Sbjct: 414 GDAA--FRSSGTTVVDPGFLAVYEEG-----RDQKNAEDD--DEGRRLPRLAVDEQVPLH 464
Query: 821 EVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFR 880
++ QH T+PP RYSE SLVK LEE GIGRPSTYAS ++VLQ+R YV + SR P
Sbjct: 465 DIVADQHFTEPPPRYSEASLVKALEEYGIGRPSTYASIIQVLQNREYVFLDSRRFKPTDV 524
Query: 881 GRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLH 940
GR VS FL+ +F+ DY FTA +E ELD VS G W L+ +W F
Sbjct: 525 GRAVSKFLTQHFTRYVDYDFTARLEDELDAVSRGEEAWVPLMQRFWQPFK---------- 574
Query: 941 IHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
QVE+ E D A+ + S P G+ + ++ RFG IG A
Sbjct: 575 -QQVEEKTESV--DRSEATGARELGSDPKTGKPVSV-RLGRFGPYAAIGTKDDADKPTFA 630
Query: 1001 KTLYGDDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKR 1059
G TL + + P+ +G P + E+V + G +G +V+ G P+
Sbjct: 631 SLRPGQSMHTITLAEALELFKLPRQLGSAP-NGEEVSVAIGRFGPFVKQGGTYASLKPE- 688
Query: 1060 ASVSHIKDVDSITLEDALELL---------RYPVNLGNHPKDGQPIMLRLARAGFSVRHR 1110
D +I L AL+++ R ++ GN + + R G +
Sbjct: 689 ------DDPYTIELPRALQIVQEKLEMLANRLILDFGNG------VQVLNGRYGAYITDG 736
Query: 1111 RTIASVPKNMKPNDVTLEKALEFLSGKDVRRCGR 1144
A +PK +P ++T + LE L+ R+ GR
Sbjct: 737 EKNARIPKEQEPKELTEAQCLELLAAAPARKPGR 770
>gi|392952190|ref|ZP_10317745.1| DNA topoisomerase I [Hydrocarboniphaga effusa AP103]
gi|391861152|gb|EIT71680.1| DNA topoisomerase I [Hydrocarboniphaga effusa AP103]
Length = 816
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 301/739 (40%), Positives = 420/739 (56%), Gaps = 49/739 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I+ YLG YEVL SYGHVRDL + G+V P+ DF M +++
Sbjct: 3 KNLVIVESPAKAKTIKKYLGKDYEVLASYGHVRDLVPKDGAVDPEADFQMKYQIIDRNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I AL A++L LA+DPDREGEAI+WH+VE+L++++AL + TV RVVFHEIT+ +
Sbjct: 63 HVRAITSALKDADSLYLATDPDREGEAISWHLVELLKEKNAL-KGKTVKRVVFHEITQRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+ A+ R+I +LV A ARRALDYL+GFN+SPLLWRK+ SAGRVQS AL LIC+
Sbjct: 122 VSEAIAHPRDIADDLVNAQQARRALDYLVGFNLSPLLWRKVQPGLSAGRVQSPALRLICE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI F QEYWT+EA K+ SF A L +++ Q ++ A+
Sbjct: 182 REEEIKAFVAQEYWTLEARAQKEAQ------SFSAKLIELDGQKVEQFTLTEEGGAEAAR 235
Query: 590 QKINSANFQVIK--NSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
++I +A +K + + R+NP+P + TSTLQQ+A KL F+++ TM+ AQ+LYEGV
Sbjct: 236 KRILAAAQGSLKVASVDKKQRRRNPSPPFTTSTLQQEANRKLGFTSSRTMRTAQQLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L G GLI+YMRTD + ++ EA EIR I +G+ P E PR Y K KNAQEA
Sbjct: 296 DL-GGDTVGLISYMRTDSVSLAQEAIAEIRKTIVSEFGASTLPPE-PRYYKSKSKNAQEA 353
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R P ++ L D KLY LIW RTMACQM A + D+ A
Sbjct: 354 HEAVRPTSALRTPKSVARYLTPDQAKLYELIWKRTMACQMTAAVFDTVAADL-KAGAQHA 412
Query: 767 FRSSCSRVEFLGFQAAY--EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVEL 824
FR++ S + GF AAY + D ++E++ R L L G+ + L E++
Sbjct: 413 FRANGSVLLEPGFLAAYNIKVTDPLDKSEDDDEDDKR------LPVLVVGETVNLLELDA 466
Query: 825 KQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMV 884
+QH TQPP RY+E SLVK LEE IGRPSTYA+ + LQ R+YV + + P G +V
Sbjct: 467 EQHFTQPPPRYTEASLVKTLEEFDIGRPSTYATIISTLQARDYVRLDGKQFTPTDVGMIV 526
Query: 885 SAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV 944
+ FL+ +F++ DY FTA +E LD VS G W+ LL D+W F L +V
Sbjct: 527 NKFLTDHFNQYVDYEFTAKLEDSLDEVSRGEKAWQPLLADFWGSFKPRVDEKMELSRQEV 586
Query: 945 EKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
+ + + + PV ++ RFG IG P A
Sbjct: 587 SEARQIGI---------DPETGKPVSA------RLGRFGPFVQIGTKDDPEKPRFASLRA 631
Query: 1005 GDDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
+ TL+ + + P+ +G P + E+V + G +G YVQ G ++ VS
Sbjct: 632 NQRIDTITLEDALALFQLPRRLGTLP-NGEEVKVNIGRFGPYVQHG---------KSYVS 681
Query: 1064 HIKDVD--SITLEDALELL 1080
+D D +I L A+EL+
Sbjct: 682 LKRDDDPYTIGLPRAIELI 700
>gi|345876223|ref|ZP_08827997.1| DNA topoisomerase [Neisseria weaveri LMG 5135]
gi|343966828|gb|EGV35080.1| DNA topoisomerase [Neisseria weaveri LMG 5135]
Length = 775
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 277/698 (39%), Positives = 390/698 (55%), Gaps = 71/698 (10%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES +KAK ++ YLG +E+L SYGHVRDL ++G+V PD++F M +++ S
Sbjct: 2 AKNLLIVESPSKAKTLKKYLGSEFEILASYGHVRDLVPKTGAVDPDNNFVMKYQMVSRNA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A AENL LA+DPDREGEAI+WH+ E+L+ + L +NI RVVFHEIT+
Sbjct: 62 KHVDAIVAAAKEAENLYLATDPDREGEAISWHLQEILKSKRGL-KNIKPQRVVFHEITKN 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ REI+ +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC
Sbjct: 121 AVLDAIAHPREIEIDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ QEYW+V LD + S F A L + ++L Q S+ + + +
Sbjct: 181 ERENEIRAFEAQEYWSVH--LDSHKGRS----KFTAKLVQWNGEKLEQFSLPNEAAQQAV 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ QV K+ R P+ TST+QQDA KL + TM+ AQ+LYEG+ +
Sbjct: 235 LTGLAEQEAQVAAIEKKKRSRNPAAPFTTSTMQQDAVRKLGMTTDRTMRTAQQLYEGIDV 294
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD + +S EA EIR I + G + P + Y K KNAQEAHE
Sbjct: 295 GQG-AIGLITYMRTDSVTLSVEALTEIRHYIENKIGKDYLPS-AAKHYKTKSKNAQEAHE 352
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIV 766
AIRPT + R P + L D KLY +IW RT+ACQM PA Q VDI GN V
Sbjct: 353 AIRPTSVYRTPESVKPFLTADQFKLYQMIWQRTVACQMNPAKFDQTTVDIAVGNG----V 408
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR + F GF + YE+ ++ND E L +K G+ L + + +Q
Sbjct: 409 FRVTGQVQTFAGFLSVYEE---------GTDDNDEDEDNKKLPEMKEGEKLPVDNIYGEQ 459
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T PP R++E +LVK LEE GIGRPSTYAS + L++R YVT++ + P G +V+
Sbjct: 460 HFTTPPPRFNEATLVKALEEFGIGRPSTYASIISTLKEREYVTLEQKRFMPTDTGDIVNK 519
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF----------------- 929
FL+ +F++ DY FTA +E +LD ++ G +W ++ +W F
Sbjct: 520 FLTEHFAQYVDYHFTAKLEDQLDEIATGKRQWIPVMDKFWKGFHKQVEEKEGIERAKFTT 579
Query: 930 ----------------------------SSYCTCAQSLHIHQVEKMLEKTFGDSLFASLP 961
+ Y C+ + ++++ + +
Sbjct: 580 EELDEICPKCGNHKLQIKFGRMGRFVACAGYPECSYTRNVNETAEQAAERIAKEAAEQAE 639
Query: 962 NKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYI 999
+ R CP CG G L++K SR G+ FIGC +P+C YI
Sbjct: 640 LEGRECPKCG-GGLVYKYSRTGSK-FIGCANYPKCKYI 675
>gi|78049488|ref|YP_365663.1| DNA topoisomerase I [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|78037918|emb|CAJ25663.1| DNA topoisomerase I [Xanthomonas campestris pv. vesicatoria str.
85-10]
Length = 830
Score = 481 bits (1238), Expect = e-132, Method: Compositional matrix adjust.
Identities = 303/804 (37%), Positives = 438/804 (54%), Gaps = 53/804 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PD+ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A A+++ LA+DPDREGEAI+WHI E+L+++ L + + RVVF EIT +
Sbjct: 63 HVEAIARAAKSADDIFLATDPDREGEAISWHIAEILKERGLLKDK-PMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMAKPRMIAGDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F P+EYW+++A H F+ A L ++ Q ++ G EA
Sbjct: 182 REEEIEAFIPREYWSIDAHC----RHPSQAFN--ARLIKLDGQKFEQFTVTDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L D + GLI+YMRTD +++S +A EIR +I +G+ P++ P Y K KNAQEA
Sbjct: 296 ALGDEGSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQ-PNAYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L ED +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLSEDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L +K GD + L + Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE--GKDTKSSEDEDEGRK-----LPLMKAGDNVPLDRIVTDQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS ++ LQ R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRFTEAALVKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA++E +LD VS G EW L+ +W F + +
Sbjct: 527 FLSGHFTRYVDYDFTANLEDDLDAVSRGEAEWIPLMEKFWGPFKEL--------VEDKKD 578
Query: 947 MLEKTFGDS--LFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
L+KT S + + P + ++ RFG IG + A
Sbjct: 579 SLDKTDAGSVRVLGTDPKSGKEVSA--------RIGRFGPMVQIGTVEDEDKPTFASLRP 630
Query: 1005 GDDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
G +L+ + + P+L+G + V + G +G + + G + Y AS+
Sbjct: 631 GQSIYSISLEDALELFKMPRLLGQD--QDQDVSVGIGRFGPFARRG---STY----ASLK 681
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNH----PKDGQPIMLRLARAGFSVRHRRTIASVPKN 1119
D +I L A+ L+ + + DG I + R G + + +PK+
Sbjct: 682 KEDDPYTIDLARAVFLIEEKEEIARNRVIKEFDGSDIQVLNGRFGPYISDGKLNGKIPKD 741
Query: 1120 MKPNDVTLEKALEFL--SGKDVRR 1141
+P +T E+ + L +GK VR+
Sbjct: 742 REPASLTFEEVQQLLADTGKPVRK 765
>gi|289667886|ref|ZP_06488961.1| DNA topoisomerase I [Xanthomonas campestris pv. musacearum NCPPB
4381]
Length = 830
Score = 481 bits (1238), Expect = e-132, Method: Compositional matrix adjust.
Identities = 307/805 (38%), Positives = 442/805 (54%), Gaps = 55/805 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PD+ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A GA+++ LA+DPDREGEAI+WHI E+L+++ L + + RVVF EIT +
Sbjct: 63 HVEAIARAAKGADDIFLATDPDREGEAISWHIAEILKERGLLKDK-PMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I A+LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMLKPRAIAADLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F P+EYW+++A H F+ A L ++ Q ++ G EA
Sbjct: 182 REEEIEAFIPREYWSIDAHC----RHPSQAFN--ARLIKLDGQKFEQFTVTDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L D + GLI+YMRTD +++S +A EIR +I +G+ P++ P Y K KNAQEA
Sbjct: 296 ALGDEGSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQ-PNAYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L +D +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLSDDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L +K GD + L + Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE--GKDTKSSEDEDEGRK-----LPLMKAGDNIPLDRIVTDQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS ++ LQ R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRFTEAALVKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA++E +LD VS G EW L+ +W F + +
Sbjct: 527 FLSGHFTRYVDYDFTANLEDDLDAVSRGEAEWIPLMEKFWGPFKEL--------VEDKKD 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
L+KT D+ + D PV G+ + ++ RFG IG + A G
Sbjct: 579 SLDKT--DAGSVRVLGTD---PVSGK-EVSARIGRFGPMVQIGTVEDEDKPTFASLRPGQ 632
Query: 1007 D----DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
ED L+ P+ +G + V + G +G + + G + Y AS+
Sbjct: 633 SIYSISIEDALEL---FKMPRALGQD--KDQDVSVGIGRFGPFARRG---SVY----ASL 680
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHPK----DGQPIMLRLARAGFSVRHRRTIASVPK 1118
D +I L A+ L+ + + +G I + R G + + +PK
Sbjct: 681 KKEDDPYTIDLARAVFLIEEKEEIARNRVIKNFEGSDIQVLNGRFGPYISDGKLNGKIPK 740
Query: 1119 NMKPNDVTLEKALEFL--SGKDVRR 1141
+ +P +T E+ + L +GK VR+
Sbjct: 741 DREPASLTFEEVQQLLADTGKPVRK 765
>gi|222054655|ref|YP_002537017.1| DNA topoisomerase I [Geobacter daltonii FRC-32]
gi|221563944|gb|ACM19916.1| DNA topoisomerase I [Geobacter daltonii FRC-32]
Length = 755
Score = 481 bits (1237), Expect = e-132, Method: Compositional matrix adjust.
Identities = 289/696 (41%), Positives = 396/696 (56%), Gaps = 47/696 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ +LG Y+VL S+GHVR L ++ GSV + DF + V + H+
Sbjct: 5 LVIVESPAKAKTIEKFLGPDYKVLASFGHVRALPSKQGSVDIEHDFEPKYAVLPESKKHI 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+IK L A+ L+LA+DPDREGEAI+WH++ L NI + RVVFHEIT+ +I
Sbjct: 65 DAIKKELKQADVLLLATDPDREGEAISWHLLAALGLDK--KPNIDIKRVVFHEITKGAIV 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R I LV A AR LDYL+GFN+SP LW+K+ SAGRVQS AL LIC+RE
Sbjct: 123 NAVENPRGISHELVDAQQARSVLDYLVGFNLSPFLWKKIRYGLSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI F QEYWT+ A L + F A+L K+L + I A + +
Sbjct: 183 KEIQAFVEQEYWTIGADLSTAGKQN-----FTANLVEADGKKLGKFDIPGKEAADKLIEI 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
++ A + V K +K R+ P+ TSTLQQ+AA KL FSA TM +AQKLYEG+ + +G
Sbjct: 238 LDKATYSVEKVTKSERKRQPSPPFTTSTLQQEAARKLGFSAKKTMSIAQKLYEGIDIGEG 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTD + +S +A E +I YG +A + PR + K KNAQEAHEAIR
Sbjct: 298 TI-GLITYMRTDSVVLSQQALDEAHQVITSLYGKEYALAK-PRVFKNKAKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT I + P L L D KLY LIW RT+ACQM A + Q V+I +A + FR +
Sbjct: 356 PTYISKTPVELKKFLSSDQFKLYDLIWKRTVACQMAEALLDQTSVEI-SAGKGYKFRVAG 414
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
+ + F GF Y E VD E EE + +L L GD L L ++ +QH TQ
Sbjct: 415 TVIRFPGFMKLYIEGVD------DETEEKE-----GVLPPLNEGDSLQLRDLLPEQHFTQ 463
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E +LVK LEE GIGRPSTYAS + L +R Y + + +PE G +VS L +
Sbjct: 464 PPPRYTEATLVKTLEEYGIGRPSTYASIMNTLVERKYARLDKKRFFPEDVGMVVSELLVN 523
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F++ DY+FTA +E ELD VS G +WK LL ++W F H + K E
Sbjct: 524 HFTKYVDYNFTASLEEELDQVSRGEKKWKPLLHEFWQPF------------HNLLKQKEG 571
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
S + D CP CG+ L+ K+ +FG F C+ +P C YI D D++
Sbjct: 572 EVNKSDLTTEAT-DEICPECGK-PLVVKLGKFGK--FFACSGYPECKYIRPL---DKDKK 624
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYV 1046
++ + + ++ + G ++L+K G +G Y+
Sbjct: 625 ESAEPVFSEEKCEKCGS------QMLIKEGRFGKYL 654
>gi|254523676|ref|ZP_05135731.1| DNA topoisomerase I [Stenotrophomonas sp. SKA14]
gi|219721267|gb|EED39792.1| DNA topoisomerase I [Stenotrophomonas sp. SKA14]
Length = 825
Score = 481 bits (1237), Expect = e-132, Method: Compositional matrix adjust.
Identities = 264/583 (45%), Positives = 358/583 (61%), Gaps = 19/583 (3%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG Y VL SYGHVRDL + G+V PD+ F+M ++V
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDYTVLASYGHVRDLIPKEGAVDPDNGFAMHYDVIDKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I A GA++++LA+DPDREGEAI+WHI E+L+++ L ++ + RVVF EIT +
Sbjct: 63 HVDAIAKAAKGADDILLATDPDREGEAISWHIAEILKER-GLVKDKPMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ REI ++LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAISQPREIASDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F +EYW++ A H F A L ++ Q +I G EA
Sbjct: 182 REEEIEAFIAREYWSIAAECAHPSQH------FNAKLIKLDGQKFEQFTITDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ + V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGSLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ D GLI+YMRTD +++S +A EIR +I YG P++ P Y K KNAQEA
Sbjct: 296 AIGDEGTVGLISYMRTDSVNLSQDALAEIRDVIARDYGIASLPDQ-PNTYQTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L +D +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLTDDERRLYELIWKRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L ++K GD + L ++ +Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE--GKDSKSAEDEDEGRK-----LPAMKPGDRVPLERIQAEQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RY+E +LVK LEE GIGRPSTYAS ++ L R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRYTEAALVKALEEYGIGRPSTYASIIQTLLFRKYVEMEGRSFRPSDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF 929
FLS +F+ DY FTA +E ELD VS G EW L+ +W F
Sbjct: 527 FLSSHFTRYVDYDFTAKLEDELDAVSRGEEEWIPLMARFWEPF 569
Score = 48.1 bits (113), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 1025 IGHHPASKEKVLLKSGPYGFYVQLGE--DRTGYLPKRASVSHIKDVDSITLEDALELLRY 1082
+G P + + V ++ G +G Y +G + PK AS+ + + +I+LEDALEL
Sbjct: 591 LGTDPKTGKPVSVRLGRFGPYAAIGSTAEDAEEKPKFASLRPGQSMHTISLEDALELFLM 650
Query: 1083 PVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKD 1138
P LG +G+P+ + + R G + T AS+ K P + L +A+ + K+
Sbjct: 651 PRALGED--NGEPVSVGIGRFGPFAKRGSTYASLKKEDDPYTIDLARAVFLIEEKE 704
>gi|386816407|ref|ZP_10103625.1| DNA topoisomerase I [Thiothrix nivea DSM 5205]
gi|386420983|gb|EIJ34818.1| DNA topoisomerase I [Thiothrix nivea DSM 5205]
Length = 817
Score = 480 bits (1236), Expect = e-132, Method: Compositional matrix adjust.
Identities = 313/802 (39%), Positives = 442/802 (55%), Gaps = 62/802 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
+++V+VES K K IQ YLG+ +EVL SYGHVRDL + G+V PD+ ++M +E+
Sbjct: 3 ENLVIVESPAKGKTIQKYLGNGFEVLASYGHVRDLIPKEGAVDPDNGYAMRYEIIDRNQR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I AL A+NL LA+DPDREGEAI+WH+ E+L+++ AL E V RVVFHEIT+ +
Sbjct: 63 HVDAIARALKKADNLYLATDPDREGEAISWHLYELLKERGAL-EGKNVQRVVFHEITKRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A+Q R++ LV A ARRALDYL+GFN+SPLLWRK+ SAGRVQS AL LI +
Sbjct: 122 IQDAIQHPRDLAHELVDAQQARRALDYLVGFNLSPLLWRKIKPSLSAGRVQSPALRLIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F QEYWT+ A +K D +F A L +L+Q I + +A +
Sbjct: 182 REEEIERFVAQEYWTMTAQNEK------DAQAFSARLHTLDGNKLDQFDINNEAQATAVR 235
Query: 590 QKI---NSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
++ ++ V K K+ R P+ TSTLQQ+A KL FS M++AQ+LYEG+
Sbjct: 236 GRLLKASNGKLLVSKVEKKQRKRYPAPPFTTSTLQQEAVRKLRFSTQRAMRVAQQLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L G GLITYMRTD + +++EA E+R LI +RYG PE P Y K KNAQEA
Sbjct: 296 DLGSGGPVGLITYMRTDSVTLANEAIAELRDLIGQRYGQDKVPE-TPNFYKTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R P + L+E+ KLY LIW RT+ACQM AT+ + D+ +A+
Sbjct: 355 HEAVRPTSALRTPEQVKQYLNEEQFKLYELIWKRTVACQMIFATMDTVSADL-SAEAGSF 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S S + GF YE E ++ E + L L G+ + L ++ +Q
Sbjct: 414 FRASGSTIRDPGFLLVYE----------EGLDDRASEKESPLPPLTEGETVTLHDINAEQ 463
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RYSE SLVK LEE GIGRPSTYAS + L R YV + SR P GR+V+
Sbjct: 464 HFTEPPPRYSEASLVKALEEFGIGRPSTYASIISTLLSREYVELDSRRFTPTDIGRIVNR 523
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL+ +F++ DY FTA++E +LD +S G W ++ D+W Q H EK
Sbjct: 524 FLTEHFTQYVDYDFTANLEDQLDAISRGEKAWVPVMDDFW----------QPFHKLVDEK 573
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
M D L + D P G + ++ R+G IG A G
Sbjct: 574 MESVNRSDVLQSRELGID---PKSGRPVSV-RLGRYGPMVQIGTRDDEEKPEFASLRPGM 629
Query: 1007 DDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+ TL+ + + P+ +G K + G +G YV+ G+ + AS+
Sbjct: 630 KLDTVTLEEALELFKLPRHLGETEDGK-AISTNVGRFGPYVKFGD-------QFASLKKE 681
Query: 1066 KDVDSITLEDALELLRYPVNLGNHPKDGQPIM------LRLARAGFS------VRHRRTI 1113
D +ITLE ALEL+ KD + I+ +++ + + V+ +
Sbjct: 682 DDPHTITLERALELI-----AEKKQKDLEKIIREFDNGIQILKGRWGPYLQQVVKRSKVQ 736
Query: 1114 ASVPKNMKPNDVTLEKALEFLS 1135
A +PK+ + +TLE+ L L+
Sbjct: 737 ARLPKDCDTDKITLEECLTLLT 758
>gi|325925734|ref|ZP_08187109.1| DNA topoisomerase I [Xanthomonas perforans 91-118]
gi|325543862|gb|EGD15270.1| DNA topoisomerase I [Xanthomonas perforans 91-118]
Length = 830
Score = 480 bits (1236), Expect = e-132, Method: Compositional matrix adjust.
Identities = 303/804 (37%), Positives = 438/804 (54%), Gaps = 53/804 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PD+ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A A+++ LA+DPDREGEAI+WHI E+L+++ L + + RVVF EIT +
Sbjct: 63 HVEAIARAAKSADDIFLATDPDREGEAISWHIAEILKERGLLKDK-PMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMAKPRMIAGDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F P+EYW+++A H F+ A L ++ Q ++ G EA
Sbjct: 182 REEEIEAFIPREYWSIDAHC----RHPSQAFN--ARLIKLDGQKFEQFTVTDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L D + GLI+YMRTD +++S +A EIR +I +G+ P++ P Y K KNAQEA
Sbjct: 296 ALGDEGSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQ-PNAYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L ED +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLSEDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L +K GD + L + Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE--GKDTKSSEDEDEGRK-----LPLMKAGDNVPLDRIVTDQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS ++ LQ R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRFTEAALVKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA++E +LD VS G EW L+ +W F + +
Sbjct: 527 FLSGHFTRYVDYDFTANLEDDLDAVSRGEAEWIPLMEKFWGPFKEL--------VEDKKD 578
Query: 947 MLEKTFGDS--LFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
L+KT S + + P + ++ RFG IG + A
Sbjct: 579 SLDKTDAGSVRVLGTDPKSGKEVSA--------RIGRFGPMVQIGTVEDEDKPTFASLRP 630
Query: 1005 GDDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
G +L+ + + P+L+G + V + G +G + + G + Y AS+
Sbjct: 631 GQSIYSISLEDALELFKMPRLLGQD--QDQDVSVGIGRFGPFARRG---STY----ASLK 681
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNH----PKDGQPIMLRLARAGFSVRHRRTIASVPKN 1119
D +I L A+ L+ + + DG I + R G + + +PK+
Sbjct: 682 KEDDPYTIDLARAVFLIEEKEEIARNRVIKEFDGSDIQVLNGRFGPYISDGKLNGKIPKD 741
Query: 1120 MKPNDVTLEKALEFL--SGKDVRR 1141
+P +T E+ + L +GK VR+
Sbjct: 742 REPASLTFEEVQQLLADTGKPVRK 765
>gi|346726580|ref|YP_004853249.1| DNA topoisomerase I [Xanthomonas axonopodis pv. citrumelo F1]
gi|346651327|gb|AEO43951.1| DNA topoisomerase I [Xanthomonas axonopodis pv. citrumelo F1]
Length = 830
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 303/804 (37%), Positives = 438/804 (54%), Gaps = 53/804 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PD+ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A A+++ LA+DPDREGEAI+WHI E+L+++ L + + RVVF EIT +
Sbjct: 63 HVEAIARAAKSADDIFLATDPDREGEAISWHIAEILKERGLLKDK-PMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMAKPRMIAGDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F P+EYW+++A H F+ A L ++ Q ++ G EA
Sbjct: 182 REEEIEAFIPREYWSIDAHC----RHPSQAFN--ARLIKLDGQKFEQFTVTDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L D + GLI+YMRTD +++S +A EIR +I +G+ P++ P Y K KNAQEA
Sbjct: 296 ALGDEGSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQ-PNAYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L ED +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLSEDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L +K GD + L + Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE--GKDTKSSEDEDEGRK-----LPLMKAGDNVPLDRIVTDQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS ++ LQ R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRFTEAALVKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA++E +LD VS G EW L+ +W F + +
Sbjct: 527 FLSGHFTRYVDYDFTANLEDDLDAVSRGEAEWIPLMEKFWGPFKEL--------VEDKKD 578
Query: 947 MLEKTFGDS--LFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
L+KT S + + P + ++ RFG IG + A
Sbjct: 579 SLDKTDAGSVRVLGTDPKSGKEVSA--------RIGRFGPMVQIGTVEDEDKPTFASLRP 630
Query: 1005 GDDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVS 1063
G +L+ + + P+L+G + V + G +G + + G + Y AS+
Sbjct: 631 GQSIYSISLEDALELFKMPRLLGQD--QDQDVSVGIGRFGPFARRG---STY----ASLK 681
Query: 1064 HIKDVDSITLEDALELLRYPVNLGNH----PKDGQPIMLRLARAGFSVRHRRTIASVPKN 1119
D +I L A+ L+ + + DG I + R G + + +PK+
Sbjct: 682 KEDDPYTIDLARAVFLIEEKEEIARNRVIKEFDGSDIQVLNGRFGPYISDGKLNGKIPKD 741
Query: 1120 MKPNDVTLEKALEFL--SGKDVRR 1141
+P +T E+ + L +GK VR+
Sbjct: 742 REPASLTFEEVQQLLADTGKPVRK 765
>gi|384421026|ref|YP_005630386.1| DNA topoisomerase I [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353463939|gb|AEQ98218.1| DNA topoisomerase I [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 830
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 310/805 (38%), Positives = 442/805 (54%), Gaps = 55/805 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PD+ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A GA+++ LA+DPDREGEAI+WHI E+L+++ L + + RVVF EIT +
Sbjct: 63 HVEAIARAAKGADDIFLATDPDREGEAISWHIAEILKERGLLKDK-PMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I A+LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMLKPRAIAADLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F +EYW+++A H F+ A L ++ Q ++ G EA
Sbjct: 182 REEEIEAFIAREYWSIDAHC----RHPSQAFN--ARLIKLDGQKFEQFTVTDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L D + GLI+YMRTD +++S +A EIR +I YG+ P++ P Y K KNAQEA
Sbjct: 296 ALGDEGSVGLISYMRTDSVNLSQDALSEIRDVIARDYGTASLPDQ-PNAYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L +D +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLSDDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L +K GD + L + Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE--GKDTKSSEDEDEGRK-----LPLMKAGDNIPLDRIVTDQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS ++ LQ R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRFTEAALVKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA +E +LD VS G EW L+ +WS F + +
Sbjct: 527 FLSGHFTRYVDYDFTAKLEDDLDAVSRGEAEWIPLMEKFWSPFKEL--------VEDKKD 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
L+KT D+ + D PV G+ + ++ RFG IG + A G
Sbjct: 579 SLDKT--DAGSVRVLGTD---PVSGK-EVSARIGRFGPMVQIGTVEDEDKPTFASLRPGQ 632
Query: 1007 D----DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
ED L+ P+ +G + V + G +G + + G + Y AS+
Sbjct: 633 SIYSISIEDALEL---FKMPRALGQD--KDQDVSVGIGRFGPFARRG---SVY----ASL 680
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHP--KD--GQPIMLRLARAGFSVRHRRTIASVPK 1118
D +I L A+ L+ + + KD G I + R G + + +PK
Sbjct: 681 KKEDDPYTIDLARAVFLIEEKEEIARNRVIKDFEGSDIQVLNGRFGPYISDGKLNGKIPK 740
Query: 1119 NMKPNDVTLEKALEFL--SGKDVRR 1141
+ +P +T E+ + L +GK VR+
Sbjct: 741 DREPASLTFEEVQQLLADTGKPVRK 765
>gi|344209032|ref|YP_004794173.1| DNA topoisomerase I [Stenotrophomonas maltophilia JV3]
gi|343780394|gb|AEM52947.1| DNA topoisomerase I [Stenotrophomonas maltophilia JV3]
Length = 828
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 262/583 (44%), Positives = 357/583 (61%), Gaps = 19/583 (3%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG Y VL SYGHVRDL + G+V PD+ F+M ++V
Sbjct: 3 KHLLIVESPAKAKTINKYLGQDYTVLASYGHVRDLIPKEGAVDPDNGFAMHYDVIDKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I A GA++++LA+DPDREGEAI+WHI E+L+++ L ++ + RVVF EIT +
Sbjct: 63 HVDAIAKAAKGADDILLATDPDREGEAISWHIAEILKER-GLVKDKPMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I ++LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAISQPRAIASDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F +EYW++ A H F A L ++ Q +I G EA
Sbjct: 182 REEEIEAFIAREYWSIAAECAHPSQH------FNAKLIKLDGQKFEQFTITDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ + V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGSLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ D GLI+YMRTD +++S +A EIR +I YG P++ P Y K KNAQEA
Sbjct: 296 AIGDEGTVGLISYMRTDSVNLSQDALAEIRDVIARDYGIASLPDQ-PNTYQTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L +D +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLTDDERRLYELIWKRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ K+N+ + + L ++K GD + L ++ +Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE-------GKDNKSAEDEDEGRKLPAMKPGDRVPLERIQAEQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RY+E +LVK LEE GIGRPSTYAS ++ L R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRYTEAALVKALEEYGIGRPSTYASIIQTLLFRKYVEMEGRSFRPSDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF 929
FLS +F+ DY FTA +E ELD VS G EW L+ +W F
Sbjct: 527 FLSSHFTRYVDYDFTAKLEDELDAVSRGEEEWIPLMARFWEPF 569
Score = 48.1 bits (113), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 1025 IGHHPASKEKVLLKSGPYGFYVQLGE--DRTGYLPKRASVSHIKDVDSITLEDALELLRY 1082
+G P + + V ++ G +G Y +G + PK AS+ + + +I+LEDALEL
Sbjct: 591 LGTDPKTGKPVSVRLGRFGPYAAIGSTAEDAEEKPKFASLRPGQSMHTISLEDALELFLM 650
Query: 1083 PVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKD 1138
P LG +G+P+ + + R G + T AS+ K P + L +A+ + K+
Sbjct: 651 PRALGED--NGEPVSVGIGRFGPFAKRGSTYASLKKEDDPYTIDLARAVFLIEEKE 704
>gi|325913836|ref|ZP_08176195.1| DNA topoisomerase I [Xanthomonas vesicatoria ATCC 35937]
gi|325539911|gb|EGD11548.1| DNA topoisomerase I [Xanthomonas vesicatoria ATCC 35937]
Length = 836
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 308/805 (38%), Positives = 441/805 (54%), Gaps = 55/805 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PD+ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A GA+++ LA+DPDREGEAI+WHI E+L+++ L + T+ RVVF EIT +
Sbjct: 63 HVEAIARAAKGADDIYLATDPDREGEAISWHIAEILKERGLLKDK-TMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I A+LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMLKPRAIAADLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F +EYW+++A H F+ A L ++ Q ++ G EA
Sbjct: 182 REEEIEAFIAREYWSIDAHC----RHPSQPFN--ARLIKLDGQKFEQFTVTDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L D + GLI+YMRTD +++S +A EIR +I +G+ P++ P Y K KNAQEA
Sbjct: 296 ALGDEGSVGLISYMRTDSVNLSQDALSEIRDVIARDFGTASLPDQ-PNAYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L ED +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLSEDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L +K GD + L + Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE--GKDTKSSEDEDEGRK-----LPLMKAGDNIPLDRIVTDQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS ++ LQ R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRFTEAALVKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA +E +LD VS G EW L+ +W F + +
Sbjct: 527 FLSGHFTRYVDYDFTAKLEDDLDAVSRGEEEWIPLMEKFWGPFKEL--------VEDKKD 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
L+KT D+ + D PV G+ + ++ RFG IG + A G
Sbjct: 579 SLDKT--DAGSVRVLGTD---PVSGK-EVSARIGRFGPMVQIGTVEDEEKPTFASLRPGQ 632
Query: 1007 D----DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
ED L+ P+ +G + V + G +G + + G + Y AS+
Sbjct: 633 SIYSISIEDALEL---FKMPRALGQD--KDQDVSVGIGRFGPFARRG---SVY----ASL 680
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNH----PKDGQPIMLRLARAGFSVRHRRTIASVPK 1118
D +I L A+ L+ + + DG I + R G + + +PK
Sbjct: 681 KKEDDPYTIDLARAVFLIEEKEEIARNRVIKEFDGSDIQVLNGRFGPYISDGKLNGKIPK 740
Query: 1119 NMKPNDVTLEKALEFL--SGKDVRR 1141
+ +P ++ E+ + L +GK VR+
Sbjct: 741 DREPASLSFEEVQQLLADTGKPVRK 765
>gi|386720131|ref|YP_006186457.1| DNA topoisomerase I [Stenotrophomonas maltophilia D457]
gi|384079693|emb|CCH14295.1| DNA topoisomerase I [Stenotrophomonas maltophilia D457]
Length = 830
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 261/583 (44%), Positives = 358/583 (61%), Gaps = 19/583 (3%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG Y VL SYGHVRDL + G+V PD+ F+M ++V
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDYTVLASYGHVRDLIPKEGAVDPDNGFAMHYDVIDKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I A GA++++LA+DPDREGEAI+WHI E+L+++ L ++ + RVVF EIT +
Sbjct: 63 HVDAIAKAAKGADDILLATDPDREGEAISWHIAEILKER-GLVKDKPMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I ++LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAISQPRAIASDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F +EYW++ A H F A L ++ Q +I G EA
Sbjct: 182 REEEIEAFIAREYWSIAAECAHPSQH------FNAKLVKLDGQKFEQFTITDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ + V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGSLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ D GLI+YMRTD +++S +A EIR +I YG P++ P Y K KNAQEA
Sbjct: 296 AIGDEGTVGLISYMRTDSVNLSQDALAEIRDVIARDYGIASLPDQ-PNTYQTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R P+ ++ L +D +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPSQVARFLTDDERRLYELIWKRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ K+N+ + + L ++K GD + L ++ +Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE-------GKDNKSAEDEDEGRKLPAMKPGDRVPLERIQAEQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RY+E +LVK LEE GIGRPSTYAS ++ L R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRYTEAALVKALEEYGIGRPSTYASIIQTLLFRKYVEMEGRSFRPSDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF 929
FLS +F++ DY FTA +E ELD VS G EW L+ +W F
Sbjct: 527 FLSSHFTQYVDYDFTAKLEDELDAVSRGEEEWIPLMARFWEPF 569
Score = 48.1 bits (113), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 1025 IGHHPASKEKVLLKSGPYGFYVQLGE--DRTGYLPKRASVSHIKDVDSITLEDALELLRY 1082
+G P + + V ++ G +G Y +G + PK AS+ + + +I+LEDALEL
Sbjct: 591 LGTDPKTGKPVSVRLGRFGPYAAIGSTAEDAEEKPKFASLRPGQSMHTISLEDALELFLM 650
Query: 1083 PVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKD 1138
P LG +G+P+ + + R G + T AS+ K P + L +A+ + K+
Sbjct: 651 PRALGED--NGEPVSVGIGRFGPFAKRGSTYASLKKEDDPYTIDLARAVFLIEEKE 704
>gi|34499724|ref|NP_903939.1| DNA topoisomerase I [Chromobacterium violaceum ATCC 12472]
gi|34105575|gb|AAQ61929.1| DNA topoisomerase [Chromobacterium violaceum ATCC 12472]
Length = 769
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 274/649 (42%), Positives = 380/649 (58%), Gaps = 40/649 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+++VES +KAK ++ YLG +EVL SYGHVRDL ++G+V P+ DF+M +++ + H
Sbjct: 4 SLLIVESPSKAKTLKKYLGPDFEVLASYGHVRDLVPKNGAVDPEKDFAMKYQLIARNSKH 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +I A+ A+++ LA+DPDREGEAI+WH+V++L + L + T RVVFHEIT+ ++
Sbjct: 64 VDAIVSAVREADHVYLATDPDREGEAISWHLVQILNSKKLLKDK-TAQRVVFHEITKNAV 122
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+Q R+I +LV A ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC+R
Sbjct: 123 LDAIQNPRDIAQDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLICER 182
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F QEYW+V LD +S + F A LT K+L+Q I + E +
Sbjct: 183 ENEIKAFVQQEYWSVH--LDSHKSRT----KFSAKLTTLGGKKLDQFDIPNEAEQASVLA 236
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ V K+ R P+ TSTLQQ+A KL + M+ AQ+LYEG+ +
Sbjct: 237 RLQGLPATVGSIEKKKKSRSPAAPFTTSTLQQEAVRKLGMTTDRAMRTAQQLYEGMDIGQ 296
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GT GLITYMRTD + +++EA +EIR I ++ + + P+ P Y K KNAQEAHEAI
Sbjct: 297 GTV-GLITYMRTDSVALANEAVEEIRGYIGLKWDADYLPK-NPAVYKSKAKNAQEAHEAI 354
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT I R P M+ L D KLY +IW RT+ACQM PA VDI + VFR+S
Sbjct: 355 RPTSILRTPEMVKPFLTTDQFKLYDMIWKRTLACQMAPAKFDTTSVDIMVGEG--VFRAS 412
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
F GF A YE+ A A L L G+ L + ++ +QH TQ
Sbjct: 413 GQVQTFAGFLAVYEEDVDDAEDEDN----------AKLPLLTEGEDLPVDKLYGEQHFTQ 462
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP R+SE SLVK LEE GIGRPSTYAS + L+DR YV + + P G +V+ FL+
Sbjct: 463 PPPRFSEASLVKALEEFGIGRPSTYASIISTLKDREYVILDKKRFLPTDTGDIVNKFLTE 522
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F++ DY+FTA +E +LD ++ G +W ++ +W F +S+ +V
Sbjct: 523 HFAQYVDYNFTAKLENQLDEIANGGRQWVPVMDTFWKGFKKQIDEKESISRAEVTT---- 578
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNY 998
+SL D CP CG+ I +FG G FI C +P C+Y
Sbjct: 579 ---ESL-------DEDCPKCGKPLSI----KFGKRGRFIACTGYPECDY 613
>gi|404495751|ref|YP_006719857.1| DNA topoisomerase I [Geobacter metallireducens GS-15]
gi|418066397|ref|ZP_12703761.1| DNA topoisomerase I [Geobacter metallireducens RCH3]
gi|78193366|gb|ABB31133.1| DNA topoisomerase I [Geobacter metallireducens GS-15]
gi|373560658|gb|EHP86915.1| DNA topoisomerase I [Geobacter metallireducens RCH3]
Length = 758
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 283/662 (42%), Positives = 379/662 (57%), Gaps = 41/662 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ +LG + V+ SYGHVR L ++ GSV +DF + + + H+
Sbjct: 5 LVIVESPAKAKTIEKFLGKDFRVMASYGHVRALPSKQGSVDVANDFEPKYAILPESKRHI 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+IK L ++ L+LA+DPDREGEAI+WH++ L D + V RVVFHEIT+ +I
Sbjct: 65 DAIKKELKESDILLLATDPDREGEAISWHLLAALGM-DKKKNAVPVKRVVFHEITKDAIV 123
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R+I LV A AR LDYL+GFN+SP LW+K+ SAGRVQS AL LIC+RE
Sbjct: 124 HAVENPRDISLELVDAQQARSILDYLVGFNLSPFLWKKIRYGLSAGRVQSVALRLICERE 183
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI F+ QEYWT+ A L + F A+L + K+L + I T A + +
Sbjct: 184 KEIKAFQEQEYWTIGAELGTGKGQK-----FSANLVEAEGKKLGKFDIPDGTAADRLVKA 238
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + + V K +K R P+ TSTLQQ+AA KL FSA TM AQKLYEGV + D
Sbjct: 239 LENGAYTVDKVAKSERKRTPAPPFTTSTLQQEAARKLGFSAKKTMSTAQKLYEGVAVGDE 298
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD + +S++A +E +I YG +A + PR Y K KNAQEAHEA+R
Sbjct: 299 GLVGLITYMRTDSVVLSNQALQEAHEVITSLYGKEYALAK-PRFYKNKAKNAQEAHEAVR 357
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT I R P + L D KLY LIW RT+ACQM A + Q VDIG A E FR++
Sbjct: 358 PTSIARTPVEVKKYLSSDQFKLYDLIWKRTVACQMAEALLDQTSVDIG-AGEGYRFRAAG 416
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
+ + F GF Y E VD A E L L G+ L L ++ +QH TQ
Sbjct: 417 TVIRFPGFMKLYIEGVDDQA-----------EEKEGTLPPLTEGELLKLQKLVPEQHFTQ 465
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E SLVK LEE GIGRPSTYAS + L +R Y + S+ PE G +V+ L++
Sbjct: 466 PPPRYTEASLVKTLEEYGIGRPSTYASIMNTLLERKYARLDSKRFVPEDVGMVVNDLLTN 525
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F++ DY+FTA +E ELD VS G +WK LL D+W FSS +L++
Sbjct: 526 HFTQYVDYNFTASLEEELDRVSRGEKQWKPLLHDFWGPFSS---------------LLKQ 570
Query: 951 TFGDSLFASLPNK--DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPR-CNYIAKTLYGDD 1007
G+ A L + D CP CG+ L+ K+ + G FI C+ + C Y G+
Sbjct: 571 KEGEVSKADLTTEATDELCPDCGK-PLVVKLGK--RGKFIACSGYQEGCTYTRNIAQGEQ 627
Query: 1008 DE 1009
E
Sbjct: 628 QE 629
>gi|289664816|ref|ZP_06486397.1| DNA topoisomerase I [Xanthomonas campestris pv. vasculorum NCPPB
702]
Length = 830
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 261/583 (44%), Positives = 358/583 (61%), Gaps = 19/583 (3%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PD+ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A A+++ LA+DPDREGEAI+WHI E+L+++ L + + RVVF EIT +
Sbjct: 63 HVEAIARAAKSADDIFLATDPDREGEAISWHIAEILKERGLLRDK-PMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I A+LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMLKPRAIAADLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F P+EYW+++A H F+ A L ++ Q ++ G EA
Sbjct: 182 REEEIEAFIPREYWSIDAHC----RHPSQAFN--ARLIKLDGQKFEQFTVTDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ V + + R+ P+ TSTLQQ+A+ KL F+ TM+LAQKLYEGV
Sbjct: 236 LRIQQAAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQLAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L D + GLI+YMRTD +++S +A EIR +I +G+ P++ P Y K KNAQEA
Sbjct: 296 ALGDEGSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQ-PNAYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L +D +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLSDDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L +K GD + L + Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE--GKDTKSSEDEDEGRK-----LPLMKAGDNIPLDRIVTDQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS ++ LQ R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRFTEAALVKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF 929
FLS +F+ DY FTA++E +LD VS G EW L+ +W F
Sbjct: 527 FLSGHFTRYVDYDFTANLEDDLDAVSRGEAEWIPLMEKFWGPF 569
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 3/132 (2%)
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+D++D+L + T+ +++G P S ++V + G +G VQ+G P AS+ +
Sbjct: 574 EDKKDSLDK-TDAGSVRVLGTDPVSGKEVSARIGRFGPMVQIGTVEDEDKPTFASLRPGQ 632
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+ SI++EDALEL + P LG KD Q + + + R G R AS+ K P +
Sbjct: 633 SIYSISIEDALELFKMPRALGQD-KD-QDVSVGIGRFGPFARRGSVYASLKKEDDPYTID 690
Query: 1127 LEKALEFLSGKD 1138
L +A+ + K+
Sbjct: 691 LARAVFLIEEKE 702
>gi|408821880|ref|ZP_11206770.1| DNA topoisomerase I [Pseudomonas geniculata N1]
Length = 828
Score = 478 bits (1229), Expect = e-131, Method: Compositional matrix adjust.
Identities = 260/583 (44%), Positives = 356/583 (61%), Gaps = 19/583 (3%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG Y VL SYGHVRDL + G+V PD+ F+M ++V
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDYTVLASYGHVRDLIPKEGAVDPDNGFAMHYDVIDKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I A GA++++LA+DPDREGEAI+WHI E+L+++ L ++ + RVVF EIT +
Sbjct: 63 HVDAIAKAAKGADDILLATDPDREGEAISWHIAEILKER-GLVKDKPMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I ++LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAISQPRAIASDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F +EYW++ A H F A L ++ Q +I A+
Sbjct: 182 REEEIEAFIAREYWSIAAECAHPSQH------FNAKLIKLDGQKFEQFTITDGDTAEAAR 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+I A + V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 MRIQQAAQGSLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ D GLI+YMRTD +++S +A EIR +I YG P++ P Y K KNAQEA
Sbjct: 296 AIGDEGTVGLISYMRTDSVNLSQDALAEIRDVIARDYGIASLPDQ-PNTYQTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R P+ ++ L +D +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPSQVARFLTDDERRLYELIWKRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ K+N+ + + L ++K GD + L ++ +Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE-------GKDNKSAEDEDEGRKLPAMKPGDRVPLERIQAEQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RY+E +LVK LEE GIGRPSTYAS ++ L R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRYTEAALVKALEEYGIGRPSTYASIIQTLLFRKYVEMEGRSFRPSDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF 929
FLS +F+ DY FTA +E ELD VS G EW L+ +W F
Sbjct: 527 FLSSHFTRYVDYDFTAKLEDELDAVSRGEEEWIPLMARFWEPF 569
Score = 47.4 bits (111), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 1025 IGHHPASKEKVLLKSGPYGFYVQLGE--DRTGYLPKRASVSHIKDVDSITLEDALELLRY 1082
+G P + + V ++ G +G Y +G + PK AS+ + + +I+LEDALEL
Sbjct: 591 LGTDPKTGKPVSVRLGRFGPYAAIGSTAEDAEEKPKFASLRPGQSMHTISLEDALELFLM 650
Query: 1083 PVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKD 1138
P LG G+P+ + + R G + T AS+ K P + L +A+ + K+
Sbjct: 651 PRALGED--KGEPVSVGIGRFGPFAKRGSTYASLKKEDDPYTIDLARAVFLIEEKE 704
>gi|456735008|gb|EMF59778.1| DNA topoisomerase I [Stenotrophomonas maltophilia EPM1]
Length = 828
Score = 478 bits (1229), Expect = e-131, Method: Compositional matrix adjust.
Identities = 260/583 (44%), Positives = 357/583 (61%), Gaps = 19/583 (3%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG Y VL SYGHVRDL + G+V PD+ F+M ++V
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDYTVLASYGHVRDLIPKEGAVDPDNGFAMHYDVIDKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I A GA++++LA+DPDREGEAI+WHI E+L+++ L ++ + RVVF EIT +
Sbjct: 63 HVDAIAKAAKGADDILLATDPDREGEAISWHIAEILKER-GLVKDKPMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I ++LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAISQPRAIASDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F +EYW++ A H F A L ++ Q +I A+
Sbjct: 182 REEEIEAFIAREYWSIAAECAHPSQH------FNAKLIKLDGQKFEQFTITDGDTAEAAR 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+I A + V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 MRIQQAAQGSLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ D GLI+YMRTD +++S +A EIR +I YG P++ P Y K KNAQEA
Sbjct: 296 AIGDEGTVGLISYMRTDSVNLSQDALAEIRDVIARDYGIASLPDQ-PNTYQTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L +D +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLTDDERRLYELIWKRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ K+N+ + + L ++K GD + L ++ +Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE-------GKDNKSAEDEDEGRKLPAMKPGDRVPLERIQAEQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RY+E +LVK LEE GIGRPSTYAS ++ L R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRYTEAALVKALEEYGIGRPSTYASIIQTLLFRKYVEMEGRSFRPSDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF 929
FLS +F++ DY FTA +E ELD VS G +W L+ +W F
Sbjct: 527 FLSSHFTQYVDYDFTAKLEDELDAVSRGEEDWIPLMSRFWEPF 569
Score = 48.1 bits (113), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 1025 IGHHPASKEKVLLKSGPYGFYVQLGE--DRTGYLPKRASVSHIKDVDSITLEDALELLRY 1082
+G P + + V ++ G +G Y +G + PK AS+ + + +I+LEDALEL
Sbjct: 591 LGTDPKTGKPVSVRLGRFGPYAAIGSTAEDAEEKPKFASLRPGQSMHTISLEDALELFLM 650
Query: 1083 PVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKD 1138
P LG +G+P+ + + R G + T AS+ K P + L +A+ + K+
Sbjct: 651 PRALGED--NGEPVSVGIGRFGPFAKRGSTYASLKKEDDPYTIDLARAVFLIEEKE 704
>gi|424670326|ref|ZP_18107351.1| DNA topoisomerase 1 [Stenotrophomonas maltophilia Ab55555]
gi|401070784|gb|EJP79298.1| DNA topoisomerase 1 [Stenotrophomonas maltophilia Ab55555]
Length = 830
Score = 478 bits (1229), Expect = e-131, Method: Compositional matrix adjust.
Identities = 260/583 (44%), Positives = 357/583 (61%), Gaps = 19/583 (3%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG Y VL SYGHVRDL + G+V PD+ F+M ++V
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDYTVLASYGHVRDLIPKEGAVDPDNGFAMHYDVIDKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I A GA++++LA+DPDREGEAI+WHI E+L+++ L ++ + RVVF EIT +
Sbjct: 63 HVDAIAKAAKGADDILLATDPDREGEAISWHIAEILKER-GLVKDKPMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I ++LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAISQPRAIASDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F +EYW++ A H F A L ++ Q +I A+
Sbjct: 182 REEEIEAFIAREYWSIAAECAHPSQH------FNAKLIKLDGQKFEQFTITDGDTAEAAR 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+I A + V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 MRIQQAAQGSLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ D GLI+YMRTD +++S +A EIR +I YG P++ P Y K KNAQEA
Sbjct: 296 AIGDEGTVGLISYMRTDSVNLSQDALAEIRDVIARDYGIASLPDQ-PNTYQTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L +D +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLTDDERRLYELIWKRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ K+N+ + + L ++K GD + L ++ +Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE-------GKDNKSAEDEDEGRKLPAMKPGDRVPLERIQAEQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RY+E +LVK LEE GIGRPSTYAS ++ L R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRYTEAALVKALEEYGIGRPSTYASIIQTLLFRKYVEMEGRSFRPSDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF 929
FLS +F++ DY FTA +E ELD VS G +W L+ +W F
Sbjct: 527 FLSSHFTQYVDYDFTAKLEDELDAVSRGEEDWIPLMSRFWEPF 569
Score = 48.1 bits (113), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 1025 IGHHPASKEKVLLKSGPYGFYVQLGE--DRTGYLPKRASVSHIKDVDSITLEDALELLRY 1082
+G P + + V ++ G +G Y +G + PK AS+ + + +I+LEDALEL
Sbjct: 591 LGTDPKTGKPVSVRLGRFGPYAAIGSTAEDAEEKPKFASLRPGQSMHTISLEDALELFLM 650
Query: 1083 PVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKD 1138
P LG +G+P+ + + R G + T AS+ K P + L +A+ + K+
Sbjct: 651 PRALGED--NGEPVSVGIGRFGPFAKRGSTYASLKKEDDPYTIDLARAVFLIEEKE 704
>gi|190576013|ref|YP_001973858.1| DNA topoisomerase I [Stenotrophomonas maltophilia K279a]
gi|190013935|emb|CAQ47575.1| putative DNA topoisomerase I [Stenotrophomonas maltophilia K279a]
Length = 830
Score = 478 bits (1229), Expect = e-131, Method: Compositional matrix adjust.
Identities = 260/583 (44%), Positives = 356/583 (61%), Gaps = 19/583 (3%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG Y VL SYGHVRDL + G+V PD+ F+M ++V
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDYTVLASYGHVRDLIPKEGAVDPDNGFAMHYDVIDKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I A GA++++LA+DPDREGEAI+WHI E+L+++ L ++ + RVVF EIT +
Sbjct: 63 HVDAIAKAAKGADDILLATDPDREGEAISWHIAEILKER-GLVKDKPMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I ++LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAISQPRAIASDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F +EYW++ A H F A L ++ Q +I A+
Sbjct: 182 REEEIEAFIAREYWSIAAECAHPSQH------FNAKLIKLDGQKFEQFTITDGDTAEAAR 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+I A V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 MRIQQAAQGTLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ D GLI+YMRTD +++S +A EIR +I YG P++ P Y K KNAQEA
Sbjct: 296 AIGDEGTVGLISYMRTDSVNLSQDALAEIRDVIARDYGIASLPDQ-PNTYQTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L +D +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLTDDERRLYELIWKRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ K+N+ + + L ++K GD + L ++ +Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE-------GKDNKSAEDEDEGRKLPAMKPGDRVPLERIQAEQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RY+E +LVK LEE GIGRPSTYAS ++ L R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRYTEAALVKALEEYGIGRPSTYASIIQTLLFRKYVEMEGRSFRPSDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF 929
FLS +F++ DY FTA +E ELD VS G +W L+ +W F
Sbjct: 527 FLSSHFTQYVDYDFTAKLEDELDAVSRGEEDWIPLMSRFWEPF 569
Score = 48.1 bits (113), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 1025 IGHHPASKEKVLLKSGPYGFYVQLGE--DRTGYLPKRASVSHIKDVDSITLEDALELLRY 1082
+G P + + V ++ G +G Y +G + PK AS+ + + +I+LEDALEL
Sbjct: 591 LGTDPKTGKPVSVRLGRFGPYAAIGSTAEDAEEKPKFASLRPGQSMHTISLEDALELFLM 650
Query: 1083 PVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKD 1138
P LG +G+P+ + + R G + T AS+ K P + L +A+ + K+
Sbjct: 651 PRALGED--NGEPVSVGIGRFGPFAKRGSTYASLKKEDDPYTIDLARAVFLIEEKE 704
>gi|21233183|ref|NP_639100.1| DNA topoisomerase I [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66770123|ref|YP_244885.1| DNA topoisomerase I [Xanthomonas campestris pv. campestris str. 8004]
gi|188993331|ref|YP_001905341.1| DNA topoisomerase I [Xanthomonas campestris pv. campestris str. B100]
gi|384426231|ref|YP_005635588.1| DNA topoisomerase I [Xanthomonas campestris pv. raphani 756C]
gi|21115033|gb|AAM43012.1| DNA topoisomerase I [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66575455|gb|AAY50865.1| DNA topoisomerase I [Xanthomonas campestris pv. campestris str. 8004]
gi|167735091|emb|CAP53303.1| DNA topoisomerase I [Xanthomonas campestris pv. campestris]
gi|341935331|gb|AEL05470.1| DNA topoisomerase I [Xanthomonas campestris pv. raphani 756C]
Length = 831
Score = 477 bits (1228), Expect = e-131, Method: Compositional matrix adjust.
Identities = 307/805 (38%), Positives = 441/805 (54%), Gaps = 55/805 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PD+ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A A+++ LA+DPDREGEAI+WHI E+L+++ L + T+ RVVF EIT +
Sbjct: 63 HVEAIARAAKSADDIYLATDPDREGEAISWHIAEILKERGLLKDK-TMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I A+LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMLKPRAIAADLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F +EYW+++A H F+ A L ++ Q ++ G EA
Sbjct: 182 REEEIEAFIAREYWSIDAHC----RHPSQPFN--ARLIKLDGQKFEQFTVTDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L D + GLI+YMRTD +++S +A EIR +I +G+ P++ P Y K KNAQEA
Sbjct: 296 ALGDEGSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQ-PNAYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L +D +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLSDDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L +K GD + L + Q
Sbjct: 414 FRASGTTVVVAGFLAVYEE--GKDTKSSEDEDEGRK-----LPLMKAGDNIPLDRIVTDQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS ++ LQ R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRFTEAALVKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA++E +LD VS G EW L+ +W F + +
Sbjct: 527 FLSGHFTRYVDYDFTANLEDDLDAVSRGEAEWIPLMEKFWGPFKEL--------VEDKKD 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
L+KT D+ + D PV G+ + ++ RFG IG + A G
Sbjct: 579 SLDKT--DAGSVRVLGAD---PVSGK-EVSARIGRFGPMVQIGTVEDEDKPTFASLRPGQ 632
Query: 1007 D----DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
ED L+ P+ +G + V + G +G + + G + Y AS+
Sbjct: 633 SIYSISIEDALEL---FKMPRALGQD--KDQDVSVGIGRFGPFARRG---SVY----ASL 680
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNH----PKDGQPIMLRLARAGFSVRHRRTIASVPK 1118
D +I L A+ L+ + + DG I + R G + + +PK
Sbjct: 681 KKEDDPYTIDLARAVFLIEEKEEIARNRVIKEFDGSDIQVLNGRFGPYISDGKLNGKIPK 740
Query: 1119 NMKPNDVTLEKALEFL--SGKDVRR 1141
+ +P +T E+ + L +GK VR+
Sbjct: 741 DREPASLTFEEVQQLLADTGKPVRK 765
>gi|325924327|ref|ZP_08185871.1| DNA topoisomerase I [Xanthomonas gardneri ATCC 19865]
gi|325545192|gb|EGD16502.1| DNA topoisomerase I [Xanthomonas gardneri ATCC 19865]
Length = 830
Score = 477 bits (1228), Expect = e-131, Method: Compositional matrix adjust.
Identities = 307/805 (38%), Positives = 440/805 (54%), Gaps = 55/805 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PD+ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A A+++ LA+DPDREGEAI+WHI E+L+++ L + + RVVF EIT +
Sbjct: 63 HVEAIARAAKTADDIFLATDPDREGEAISWHIAEILKERGLLKDK-PMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I A+LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMLKPRAIAADLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F +EYW+++A + H F+ A L ++ Q ++ G EA
Sbjct: 182 REEEIEAFIAREYWSIDA----QCRHPSQPFN--ARLIKLDGQKFEQFTVTDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ QK V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQKAAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L D + GLI+YMRTD +++S +A EIR +I +G+ P++ P Y K KNAQEA
Sbjct: 296 ALGDEGSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQ-PNTYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT PA ++ L +D +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAIRPTSALHTPAQVARFLSDDERRLYELIWKRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L +K GD + L + Q
Sbjct: 414 FRASGTTVVVAGFLAVYEE--GKDTKSSEDEDEGRK-----LPPMKAGDNIPLDRIVTDQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS ++ LQ R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRFTEAALVKTLEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA +E +LD VS G EW L+ +W F + +
Sbjct: 527 FLSGHFTRYVDYDFTAKLEDDLDAVSRGEAEWIPLMEKFWGPFKEL--------VEDKKD 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
L+KT D+ + D PV G+ + ++ RFG IG + A G
Sbjct: 579 SLDKT--DAGSVRVLGAD---PVSGK-EVSARIGRFGPMVQIGTVEDEEKPTFASLRPGQ 632
Query: 1007 D----DEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
ED L+ P+ +G + V + G +G + + G + Y AS+
Sbjct: 633 SIFSISIEDALEL---FKMPRALGQD--KDQDVSVGIGRFGPFARRG---SVY----ASL 680
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNH----PKDGQPIMLRLARAGFSVRHRRTIASVPK 1118
D +I LE A+ L+ + + DG I + R G + + +PK
Sbjct: 681 KKEDDPYTIDLERAVFLIEEKEEIARNRVIKEFDGSDIQVLNGRFGPYISDGKLNGKIPK 740
Query: 1119 NMKPNDVTLEKALEFL--SGKDVRR 1141
+ +P ++ E+ + L +GK VR+
Sbjct: 741 DREPASLSFEEVQQLLTDTGKPVRK 765
>gi|357416602|ref|YP_004929622.1| DNA topoisomerase I [Pseudoxanthomonas spadix BD-a59]
gi|355334180|gb|AER55581.1| DNA topoisomerase I [Pseudoxanthomonas spadix BD-a59]
Length = 846
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 260/584 (44%), Positives = 360/584 (61%), Gaps = 19/584 (3%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PD++F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNNFAMRYDLIEKNQK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A GA+++ LA+DPDREGEAI+WHI E+L++++ L N + RVVF EIT +
Sbjct: 63 HVEAIAKAAKGADDIYLATDPDREGEAISWHIAEILKERN-LIGNKPMHRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMARPRAIAGDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F +EYW++ A +H F+ A L ++ Q ++ G EA
Sbjct: 182 REEEIEAFIAREYWSIAAAC----AHPSQPFT--AKLVKLDGQKFEQFTVTDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGVLHVTDVTSKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L D A GLI+YMRTD +++S +A EIR +I YG+ P++ P Y K KNAQEA
Sbjct: 296 ALGDEGAVGLISYMRTDSVNLSQDALNEIRDVIARDYGTASLPDQ-PNIYLTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R P+ ++ L +D +LY LIW R +ACQM PAT+ + V++ A +
Sbjct: 355 HEAVRPTSALRTPSQVARFLSDDERRLYELIWKRAVACQMIPATLNTVSVELA-AGSAHS 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ R E+E+ R L ++K GD + L + +Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE--GKDTRSAEDEDEGRK-----LPAMKPGDSVPLDRIVAEQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS ++ L R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRFTEAALVKTLEEYGIGRPSTYASIIQTLLFRKYVEMEGRSFRPSDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFS 930
FLS +F+ DY FTA +E ELD VS G +W L+ +W FS
Sbjct: 527 FLSGHFTRYVDYDFTAKLEDELDAVSRGEEDWIPLMARFWGPFS 570
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 1025 IGHHPASKEKVLLKSGPYGFYVQLG------EDRTGYLPKRASVSHIKDVDSITLEDALE 1078
+G P + + V ++ G +G Y +G ED+ P+ AS+ + + +I+LEDALE
Sbjct: 591 LGTDPKTGKPVSVRLGRFGPYAAIGSTAEDAEDK----PRFASLRPGQSMHTISLEDALE 646
Query: 1079 LLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKD 1138
L P LG G+ + + + R G + + AS+ K P + L +A+ + K+
Sbjct: 647 LFLMPRALGQD--KGEEVSVGIGRFGPFAKRGSSYASLKKEDDPYTIDLARAVFLIEEKE 704
>gi|389795258|ref|ZP_10198388.1| DNA topoisomerase I [Rhodanobacter fulvus Jip2]
gi|388431035|gb|EIL88139.1| DNA topoisomerase I [Rhodanobacter fulvus Jip2]
Length = 838
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 311/811 (38%), Positives = 439/811 (54%), Gaps = 63/811 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES KAK I YLG ++VL SYGHVRDL + G+V + F+M +EV
Sbjct: 2 AKNLLIVESPAKAKTINKYLGKDFQVLASYGHVRDLRPKEGAVDTEHGFAMAYEVIERNE 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A A+++ LA+D DREGEAI+WHI E+L ++ L + + RVVF EIT
Sbjct: 62 KHVDAIAKAAKLADDIYLATDLDREGEAISWHISEILNER-GLTKGKQLHRVVFSEITPK 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+IK A+ A R++ +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I
Sbjct: 121 AIKAAVAAPRQLSHDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEA--- 585
+RE EI+ FK +EYWT+EA L E F A L+ K+ Q + + +A
Sbjct: 181 EREEEIEAFKAREYWTIEAQLKHAEG------DFSARLSRLNGKKFEQFDLTNEADAQAA 234
Query: 586 KDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
+D ++ V S + R+ P+ TSTLQQ+AA KL F+ + TMK+AQ LYEG
Sbjct: 235 RDALKQAARGRLTVSDVSSKERKRRPAAPFTTSTLQQEAARKLGFTTSRTMKVAQGLYEG 294
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
V L D GLITYMRTD + D+A E+R LI +G+ P+ P+ Y K KNAQE
Sbjct: 295 VALGDEGNVGLITYMRTDSTMLGDDALAELRQLIARDFGAKALPD-APQVYKTKSKNAQE 353
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVD-----IGN 760
AHEAIRPT P ++ L++D KLY LIW RT+ACQM AT+ + V+ +
Sbjct: 354 AHEAIRPTSAMYTPKSVAAYLNDDQRKLYELIWKRTVACQMIHATLNTVSVEFALPHVEG 413
Query: 761 ADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLG 820
D S FR+S + V GF A YE+ G+ + K +++++ L L+ G+ + L
Sbjct: 414 GDAS--FRASGTTVVDPGFLAVYEE---GSDQKKADDDDEGRR----LPRLEKGEAVPLH 464
Query: 821 EVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFR 880
E+ QH T+PP RYSE SLVK LEE GIGRPSTYAS ++VLQ+R YV + SR P
Sbjct: 465 EIAADQHFTEPPPRYSEASLVKALEEHGIGRPSTYASIIQVLQNREYVFLDSRRFKPSDV 524
Query: 881 GRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLH 940
GR VS FL+ +F++ DY FTA ME ELD VS G W L+ +W F
Sbjct: 525 GRAVSKFLTQHFTQYVDYDFTAKMEDELDAVSRGEEAWVPLMERFWVPFK---------- 574
Query: 941 IHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
QV++ E D A+ + + P G+ + ++ RFG IG A
Sbjct: 575 -QQVDEKTESV--DRSEATGARELGTDPKTGKPVSV-RLGRFGPYAAIGTKDDEEKPTFA 630
Query: 1001 KTLYGDDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKR 1059
G TL + + P+ +G P E V + G +G +V+ G
Sbjct: 631 SLRPGQSMHTITLADALELFKLPRQLGTAPNGDE-VSVAIGRFGPFVKQGS-------TY 682
Query: 1060 ASVSHIKDVDSITLEDALELL---------RYPVNLGNHPKDGQPIMLRLARAGFSVRHR 1110
AS+ D +I L AL+++ R ++ GN + + R G +
Sbjct: 683 ASLKAEDDPYTIELPRALQVVAEKLEMLANRLILDFGNG------VQVLNGRYGPYITDG 736
Query: 1111 RTIASVPKNMKPNDVTLEKALEFLSGKDVRR 1141
A +PK+ +P +T + LE L+ V++
Sbjct: 737 EKNARIPKDQEPKTLTEAQCLELLAAAPVKK 767
>gi|58580202|ref|YP_199218.1| DNA topoisomerase I [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84622197|ref|YP_449569.1| DNA topoisomerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188574927|ref|YP_001911856.1| DNA topoisomerase I [Xanthomonas oryzae pv. oryzae PXO99A]
gi|58424796|gb|AAW73833.1| DNA topoisomerase I [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84366137|dbj|BAE67295.1| DNA topoisomerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188519379|gb|ACD57324.1| DNA topoisomerase I [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 830
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 261/583 (44%), Positives = 357/583 (61%), Gaps = 19/583 (3%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PD+ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNSFAMRYDLIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A GA+++ LA+DPDREGEAI+WHI E+L+++ L + + RVVF EIT +
Sbjct: 63 HVEAIARAAKGADDIFLATDPDREGEAISWHIAEILKERGLLKDK-PMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I A+LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMLKPRAIAADLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F +EYW+++A H F+ A L ++ Q ++ G EA
Sbjct: 182 REEEIEAFIAREYWSIDAHC----RHPSQAFN--ARLIKLDGQKFEQFTVTDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L D + GLI+YMRTD +++S +A EIR +I YG+ P++ P Y K KNAQEA
Sbjct: 296 ALGDEGSVGLISYMRTDSVNLSQDALSEIRDVIARDYGTASLPDQ-PNAYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L +D +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPAQVARFLSDDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L +K GD + L + Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE--GKDTKSSEDEDEGRK-----LPLMKAGDNIPLDRIVTDQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS ++ LQ R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRFTEAALVKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF 929
FLS +F+ DY FTA +E +LD VS G EW L+ +W F
Sbjct: 527 FLSGHFTRYVDYDFTAKLEDDLDAVSRGEAEWIPLMEKFWGPF 569
>gi|161870936|ref|YP_001600116.1| DNA topoisomerase I [Neisseria meningitidis 053442]
gi|161596489|gb|ABX74149.1| DNA topoisomerase I [Neisseria meningitidis 053442]
Length = 748
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 265/631 (41%), Positives = 363/631 (57%), Gaps = 37/631 (5%)
Query: 368 LGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILA 427
+G +E+L SYGHVRDL +SG+V PD+ F+M +++ S H+ +I AEN+ LA
Sbjct: 1 MGGDFEILASYGHVRDLVPKSGAVDPDNGFAMKYQLISRNGKHVDAIVAGAKEAENIYLA 60
Query: 428 SDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQA 487
+DPDREGEAI+WH++E+L+ + L +NI RVVFHEIT+ ++ A+ REI+ +LV A
Sbjct: 61 TDPDREGEAISWHLLEILKSKRGL-KNIKPQRVVFHEITKNAVLDAVAHPREIEMDLVDA 119
Query: 488 YLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEA 547
ARRALDYL+GFN+SPLLW+K+ SAGRVQS AL LIC+RE EI F+ QEYWTV
Sbjct: 120 QQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLICERENEIRAFEAQEYWTVH- 178
Query: 548 VLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSM 607
LD + S F A L + +L Q + + D+ +++ V K+
Sbjct: 179 -LDSHKGRS----KFTAKLAQYNGAKLEQFDLPNEAAQADVLKELEGKEAVVTAIEKKKR 233
Query: 608 VRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHI 667
R P+ TST+QQDA KL F+ TM+ AQ+LYEG+ + G A GLITYMRTD +++
Sbjct: 234 SRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDVGQG-AIGLITYMRTDSVNL 292
Query: 668 SDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLD 727
+DEA EIR I + G + P ++Y K KNAQEAHEAIRPT + R P + L
Sbjct: 293 ADEALTEIRHYIENKIGKEYLPSAA-KQYKTKSKNAQEAHEAIRPTSVYRTPESVKPFLS 351
Query: 728 EDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVD 787
D KLY +IW RT+ACQM PA Q VDI VFR + F GF + YE+
Sbjct: 352 ADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGKG--VFRVTGQVQTFAGFLSVYEESS 409
Query: 788 AGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEEL 847
+ L + GD L + ++ +QH T PP RY+E +LVK LEE
Sbjct: 410 DDEEGEDSKK----------LPEMSEGDKLPVDKLYGEQHFTTPPPRYNEATLVKALEEY 459
Query: 848 GIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETE 907
GIGRPSTYAS + L+DR YVT++ + P G +V+ FL+ +F++ DY FTA +E +
Sbjct: 460 GIGRPSTYASIISTLKDREYVTLEQKRFMPTDTGDIVNKFLTEHFAQYVDYHFTAKLEDQ 519
Query: 908 LDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSC 967
LD ++ G +W L+ +W F I QVE EK + + D +C
Sbjct: 520 LDEIAGGKRQWIPLMDKFWKPF-----------IKQVE---EKEGIERAKFTTQELDETC 565
Query: 968 PVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
P CGE L K + G F+ C +P C+Y
Sbjct: 566 PKCGEHKLQIKFGKMGR--FVACAGYPECSY 594
>gi|253700154|ref|YP_003021343.1| DNA topoisomerase I [Geobacter sp. M21]
gi|251775004|gb|ACT17585.1| DNA topoisomerase I [Geobacter sp. M21]
Length = 779
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 279/673 (41%), Positives = 382/673 (56%), Gaps = 56/673 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
+++V+VES KAK I+ +LG Y+VL S+GHVR L ++ GSV + DF + V +
Sbjct: 3 QNLVIVESPAKAKTIEKFLGHDYKVLASFGHVRALPSKQGSVDTEHDFEPKYAVLPESKK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +IK + G +L+LA+DPDREGEAI+WH++ L + RVVFHEIT+ +
Sbjct: 63 HIDAIKKEMKGISSLLLATDPDREGEAISWHLLAALGLDGKKKLPFEIKRVVFHEITKDA 122
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I A++ R+I +LV A AR LDYL+GF +SP LW+K+ SAGRVQS AL LIC+
Sbjct: 123 IVHAVENPRDIALDLVDAQQARSILDYLVGFTLSPFLWKKIRYGLSAGRVQSVALRLICE 182
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI FK QEYWT+ A L+ + L A L + K+L + I A
Sbjct: 183 REKEIQAFKEQEYWTIAAKLETAKKQGLT-----ATLVEAEGKKLGKFDIPDQETAYRHF 237
Query: 590 QKINSANF----------------------QVIKNSKRSMVRKNPTPYITSTLQQDAANK 627
K+ F +V K +K R+ P+ TSTLQQ+AA K
Sbjct: 238 AKLGGKEFPPQEGDESGKPLTVEHPAHPEYRVDKVTKSERKRQPSPPFTTSTLQQEAARK 297
Query: 628 LNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHH 687
L FSA TM AQKLYEG+ + +G A GLITYMRTD + +S+ A +E +S+I YG +
Sbjct: 298 LGFSAKKTMSTAQKLYEGIDVGEG-AVGLITYMRTDSVALSNVALEEAKSVITSLYGKEY 356
Query: 688 APEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQ 747
A E+ PR + K KNAQEAHEA+RPT I + P L L D KLY LIW RT+ACQM
Sbjct: 357 ALEK-PRFFKNKSKNAQEAHEAVRPTYIAKTPVELKKFLSSDQFKLYDLIWKRTVACQMA 415
Query: 748 PATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFA 806
A + Q VDIG A E FR + + + F GF Y E VD E E+ D+
Sbjct: 416 EALLDQTSVDIG-AGEGFRFRVAGTVIRFAGFMKLYIEGVD------DEAEDKDKE---G 465
Query: 807 ILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRN 866
+L L GD L L ++ ++H TQPP RY+E SLVK LEE GIGRPSTYAS + L +R
Sbjct: 466 LLPPLAEGDILKLQQLLPERHFTQPPPRYTEASLVKTLEEYGIGRPSTYASIMNTLTERK 525
Query: 867 YVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYW 926
Y + + +PE G +VS L+++F++ DY+FTA++E ELD VS G +W+ LL ++W
Sbjct: 526 YARLDKKRFFPEDVGMVVSDLLTNHFTQYVDYNFTANLEEELDMVSRGEKQWRPLLHEFW 585
Query: 927 SRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGY 986
F + + +++ + E T + CP CG+ L+ K+ +FG
Sbjct: 586 GPFINLLKLKEG-EVNKSDLTTEAT------------NEVCPECGK-PLVVKLGKFGK-- 629
Query: 987 FIGCNQHPRCNYI 999
F C +P C YI
Sbjct: 630 FYACTGYPECRYI 642
>gi|347538119|ref|YP_004845543.1| DNA topoisomerase I [Pseudogulbenkiania sp. NH8B]
gi|345641296|dbj|BAK75129.1| DNA topoisomerase I [Pseudogulbenkiania sp. NH8B]
Length = 763
Score = 474 bits (1220), Expect = e-130, Method: Compositional matrix adjust.
Identities = 272/649 (41%), Positives = 373/649 (57%), Gaps = 40/649 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+++VES +KAK ++ YLG +EVL SYGHVRDL +SG+V PD +F+M +++ H
Sbjct: 4 SLLIVESPSKAKTLKKYLGQDFEVLASYGHVRDLVPKSGAVDPDKNFAMKYQLIPRNAKH 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +I A++ A+++ LA+DPDREGEAI+WH+V++L + L + T RVVFHEIT+ ++
Sbjct: 64 VDAITQAVAEADHIYLATDPDREGEAISWHLVQILNNKKLL-KGKTAQRVVFHEITKNAV 122
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+I LV A ARRALDYL+GFN+SP+LW+K+ SAGRVQS AL LIC+R
Sbjct: 123 LDAIANPRDISQELVDAQQARRALDYLVGFNLSPMLWKKIRRGLSAGRVQSPALRLICER 182
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F QEYW++ LD + F A L +L+Q I S D
Sbjct: 183 ENEIRAFTEQEYWSIH--LDSHKGRQ----KFGAKLFELGGNKLDQFDIPSEAVQADTLA 236
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ V K+ R P+ TSTLQQ+A KL + TM+ AQ+LYEGV +
Sbjct: 237 RLAEQPATVSNVDKKKKTRNPAAPFTTSTLQQEAVRKLGMTTDRTMRTAQQLYEGVDIGQ 296
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GT GLITYMRTD + +S+EA EIR I ++ P+ P + K KNAQEAHEAI
Sbjct: 297 GTV-GLITYMRTDAVVLSNEALTEIRGYIESQFEPAFLPK-APVTFKNKSKNAQEAHEAI 354
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT I R PA + L D KLY +IW RT+ACQM PA VDI + VFR++
Sbjct: 355 RPTSIERTPAAMKPFLTTDQFKLYEMIWKRTLACQMAPAKFDTTSVDITVGEG--VFRAT 412
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
F GF A YE+ A A L +L+ GD L + ++ +QH TQ
Sbjct: 413 GQVQTFAGFLAVYEEDVDDAEDEDN----------AKLPALEVGDVLPVDKLYGEQHFTQ 462
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP R+SE SLVK LEE GIGRPSTYAS + L+DR YV + + P G +V+ FL+
Sbjct: 463 PPPRFSEASLVKALEEFGIGRPSTYASIISTLKDREYVVLDKKRFLPTDTGEIVNKFLTE 522
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + DY+FTA +E +LD ++ G EW ++ +W + + +SL +V
Sbjct: 523 HFGQYVDYNFTAKLEDQLDEIANGRREWVPVMETFWKGLAKQLSEKESLSRAEVTT---- 578
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNY 998
+SL D +CP C + I +FG G FI C +P C+Y
Sbjct: 579 ---ESL-------DEACPKCSKPLQI----KFGKRGRFIACTGYPECDY 613
>gi|197119084|ref|YP_002139511.1| DNA topoisomerase I [Geobacter bemidjiensis Bem]
gi|197088444|gb|ACH39715.1| DNA topoisomerase I [Geobacter bemidjiensis Bem]
Length = 779
Score = 474 bits (1220), Expect = e-130, Method: Compositional matrix adjust.
Identities = 278/673 (41%), Positives = 381/673 (56%), Gaps = 56/673 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
+++V+VES KAK I+ +LG Y+VL S+GHVR L ++ GSV + DF + V +
Sbjct: 3 QNLVIVESPAKAKTIEKFLGHDYKVLASFGHVRALPSKQGSVDTEHDFEPKYAVLPESKK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +IK + G +L+LA+DPDREGEAI+WH++ L + RVVFHEIT+ +
Sbjct: 63 HIDAIKKEMKGISSLLLATDPDREGEAISWHLLAALGLDGKKKLPFEIKRVVFHEITKDA 122
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I A++ R+I +LV A AR LDYL+GF +SP LW+K+ SAGRVQS AL LIC+
Sbjct: 123 IVHAVENPRDIALDLVDAQQARSILDYLVGFTLSPFLWKKIRYGLSAGRVQSVALRLICE 182
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI FK QEYWT+ A L+ + L A L + K+L + I A
Sbjct: 183 REKEIQAFKEQEYWTIAAKLETAKKQGLT-----ATLVEAEGKKLGKFDIPDQETAFRHF 237
Query: 590 QKINSANF----------------------QVIKNSKRSMVRKNPTPYITSTLQQDAANK 627
K+ F +V K +K R+ P+ TSTLQQ+AA K
Sbjct: 238 AKLGGKEFPTQEGDEKGTPLVVDKPAHPEYRVDKVTKSERKRQPSPPFTTSTLQQEAARK 297
Query: 628 LNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHH 687
L FSA TM AQKLYEG+ + +G A GLITYMRTD + +S+ A +E +S+I YG +
Sbjct: 298 LGFSAKKTMSTAQKLYEGIDVGEG-AVGLITYMRTDSVALSNVALEEAKSVITSLYGKEY 356
Query: 688 APEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQ 747
A E+ PR + K KNAQEAHEA+RPT I + P L L D KLY LIW RT+ACQM
Sbjct: 357 ALEK-PRFFKNKSKNAQEAHEAVRPTYIAKTPIELKKFLSSDQFKLYDLIWKRTVACQMA 415
Query: 748 PATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFA 806
A + Q VDIG A E FR + + + F GF Y E VD +E + E
Sbjct: 416 EALLDQTSVDIG-AGEGFRFRVAGTVIRFAGFMKLYIEGVD---------DETEDKEKEG 465
Query: 807 ILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRN 866
+L L GD L L ++ ++H TQPP RY+E SLVK LEE GIGRPSTYAS + L +R
Sbjct: 466 LLPPLAEGDILKLQQLLPERHFTQPPPRYTEASLVKTLEEYGIGRPSTYASIMNTLTERK 525
Query: 867 YVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYW 926
Y + + +PE G +VS L+++F++ DY+FTA++E ELD VS G +W+ LL ++W
Sbjct: 526 YARLDKKRFFPEDVGMVVSDLLTNHFTQYVDYNFTANLEEELDMVSRGEKQWRPLLHEFW 585
Query: 927 SRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGY 986
F + + +++ + E T + CP CG+ L+ K+ +FG
Sbjct: 586 GPFINLLKLKEG-EVNKSDLTTEAT------------NEVCPECGK-PLVVKLGKFGK-- 629
Query: 987 FIGCNQHPRCNYI 999
F C +P C YI
Sbjct: 630 FYACTGYPECRYI 642
>gi|258545462|ref|ZP_05705696.1| DNA topoisomerase 1 (DNA topoisomerase I) [Cardiobacterium hominis
ATCC 15826]
gi|258519295|gb|EEV88154.1| DNA topoisomerase 1 (DNA topoisomerase I) [Cardiobacterium hominis
ATCC 15826]
Length = 790
Score = 474 bits (1219), Expect = e-130, Method: Compositional matrix adjust.
Identities = 307/786 (39%), Positives = 433/786 (55%), Gaps = 67/786 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK + YLG YEV+ SYGHVRDL ++G+V DDF+M +E+
Sbjct: 3 KHLLIVESPAKAKTLHKYLGKDYEVMASYGHVRDLVPKNGAVDTADDFAMHYEIIERNAR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ I A AEN+ LA+DPDREGEAI+WH+ E+L+++ AL +N V RV FHEIT+ +
Sbjct: 63 HVNEITKAAKTAENVYLATDPDREGEAISWHLREILRERGAL-DNKNVYRVAFHEITQNA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A+ R+++ +LV A ARRALDYL+GFN+SPLLWRK+ SAGRVQS AL +I +
Sbjct: 122 IQQAVAHPRQLEMDLVNAQQARRALDYLVGFNLSPLLWRKVRPGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F +EYW + A + S FP LT + ++ + S T A D
Sbjct: 182 REREIEAFNSEEYWDIAAAI------SYGGQEFPGKLTIYAGEKTKKFSF---TNAADTH 232
Query: 590 QKINSAN------FQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLY 643
I++ V + +K+ R P+ TST+QQ AANKL+F A TM++AQ+LY
Sbjct: 233 AAIDALKAAAQGVLTVAEVAKKDSKRNPAPPFTTSTMQQAAANKLHFGAQKTMRVAQRLY 292
Query: 644 EGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA 703
E AG ITYMRTD ++++ EA IR+ + ++YG+++ P++ PR Y K KNA
Sbjct: 293 E---------AGHITYMRTDSVNLAQEAISAIRTWVSQQYGANYLPDK-PRYYKTKAKNA 342
Query: 704 QEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADE 763
QEAHEAIRPTD R A L L D KLY LI R +A QM A + + D+ D+
Sbjct: 343 QEAHEAIRPTDCGRDAASLG--LSGDEHKLYELIRKRAIASQMASAILENVSADLHAGDD 400
Query: 764 SIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVE 823
FR+S S V+F G+ + Y++ +N +L ++ GD L L ++
Sbjct: 401 KNQFRASGSTVKFPGYMSVYQEERDDKDEDDDNR---------LLPPMQAGDRLQLLDIL 451
Query: 824 LKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRM 883
QH TQPP RYSE +L+K+LE GIGRPSTYAS + LQDR YV ++R P G++
Sbjct: 452 GNQHFTQPPPRYSEAALIKELENNGIGRPSTYASIISTLQDREYVEQENRRFIPTTIGKV 511
Query: 884 VSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQ 943
V+ FL+ +F DY FTA +E +LD VS G WK LL D+WS FS + I +
Sbjct: 512 VNDFLTKHFERYVDYDFTARLEDDLDAVSRGERAWKPLLGDFWSAFSH--QLDEKKDIPR 569
Query: 944 VEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
E M + G + P G+ + + RFG IG A
Sbjct: 570 EEVMQARELG------------TDPKSGKPVSV-RFGRFGPFVQIGSKDDEEKPQFASIP 616
Query: 1004 YGDDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
+ +E TL+ + + P+++GH E ++ G +G YV+ G+ R LPK
Sbjct: 617 SDRNMDEITLEEALELFKLPRVVGHSEEDGE-IVTSIGRFGPYVRYGK-RYVSLPKE--- 671
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHP-----KDGQPIMLRL-ARAGFSVRHRRTIASV 1116
+D +ITLE ALEL+ + K G I+ L R G V + AS+
Sbjct: 672 ---EDPLTITLERALELIAAKKEADSQKYIKEIKHGDEILQVLNGRFGPYVSNGSINASI 728
Query: 1117 PKNMKP 1122
PK ++P
Sbjct: 729 PKTIEP 734
>gi|307611478|emb|CBX01149.1| DNA topoisomerase I [Legionella pneumophila 130b]
Length = 733
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 280/679 (41%), Positives = 398/679 (58%), Gaps = 51/679 (7%)
Query: 374 VLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDRE 433
+L SYGHVRDL AR GSV P+ FSM + H+ +I L +++L+LA+DPDRE
Sbjct: 1 MLASYGHVRDLPARKGSVNPEKHFSMTYVPIEKNARHIDTIAKTLKKSDSLLLATDPDRE 60
Query: 434 GEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRA 493
GEAI+WHI E++++++ L + +V R+ F+EIT+A+I+ A+ R I +LV A ARRA
Sbjct: 61 GEAISWHIFELMKERNLLKDK-SVHRIFFNEITKAAIQDAINHPRSISMDLVNAQQARRA 119
Query: 494 LDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKE 553
LDYL+GFN+SPLLW+K+ SAGRVQS AL LI +RE EI+ F QEYW + A K
Sbjct: 120 LDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIVEREEEIERFIAQEYWKIIA----KC 175
Query: 554 SHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINS---ANFQVIKNSKRSMVRK 610
+H+ + F A LTH+ ++L Q S+ +A +I++++ + V + K+ RK
Sbjct: 176 AHA--STEFEARLTHYNEEKLQQFSVTQQEQAHEIKKQLIAQAQGFLTVAQIDKKQRKRK 233
Query: 611 NPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDE 670
P+ITSTLQQ+AA KL F+A TM +AQ+LYEG+ + GT GLITYMRTD ++++ E
Sbjct: 234 PSPPFITSTLQQEAARKLGFTARKTMMVAQQLYEGIDIGTGTV-GLITYMRTDSVNLAKE 292
Query: 671 AAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDC 730
A EIR I +RY + P PR Y K KNAQEAHEAIRPT I+R P M+ G L D
Sbjct: 293 AIDEIRDYITQRYKGDNCPN-SPRIYKTKSKNAQEAHEAIRPTSIKRTPEMVQGSLTSDQ 351
Query: 731 LKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGA 790
LKLYSLIW RT+A QM A + + VD + + FR++ S + F GF + YE+ G
Sbjct: 352 LKLYSLIWKRTVASQMADAILDTVSVDF-SCGKGNTFRANGSTIAFPGFLSVYEE---GR 407
Query: 791 IRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIG 850
K+ + D+ IL + G+ + + ++E QH T+PP RYSE +LVK LEE IG
Sbjct: 408 DDSKDEDNEDK-----ILPAFNVGEKIKVSDIETNQHFTEPPPRYSEATLVKALEEYDIG 462
Query: 851 RPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDN 910
RPSTYAS + LQ R YV V+ + P GR+V+ FL++YF+ DY FTA +E LD
Sbjct: 463 RPSTYASIIHTLQQREYVVVEKKRFLPTDVGRIVNRFLTNYFTRYVDYQFTAGLEDTLDA 522
Query: 911 VSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVC 970
++ G +W +L ++W F + Q++ + E+ + L D CP C
Sbjct: 523 IARGEKDWIPVLEEFWQPF-----------VQQIQNIDEQVQRKDVTTEL--LDEKCPKC 569
Query: 971 GEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHH- 1028
+ I R G G FIGC +P C+Y +D EP+++
Sbjct: 570 QKPLSI----RLGKRGRFIGCTGYPDCDYT----------QDISNPEGEKSEPEVVEGRS 615
Query: 1029 -PASKEKVLLKSGPYGFYV 1046
P + +K+G YG ++
Sbjct: 616 CPLCHGALHIKTGRYGKFI 634
>gi|296108243|ref|YP_003619944.1| Topoisomerase IA [Legionella pneumophila 2300/99 Alcoy]
gi|295650145|gb|ADG25992.1| Topoisomerase IA [Legionella pneumophila 2300/99 Alcoy]
Length = 733
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 280/679 (41%), Positives = 398/679 (58%), Gaps = 51/679 (7%)
Query: 374 VLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDRE 433
+L SYGHVRDL AR GSV P+ FSM + H+ +I L +++L+LA+DPDRE
Sbjct: 1 MLASYGHVRDLPARKGSVNPEKHFSMTYVPIEKNARHIDTIAKTLKKSDSLLLATDPDRE 60
Query: 434 GEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRA 493
GEAI+WHI E++++++ L + +V R+ F+EIT+A+I+ A+ R I +LV A ARRA
Sbjct: 61 GEAISWHIFELMKERNLLKDK-SVHRIFFNEITKAAIQDAINHPRSISMDLVNAQQARRA 119
Query: 494 LDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKE 553
LDYL+GFN+SPLLW+K+ SAGRVQS AL LI +RE EI+ F QEYW + A K
Sbjct: 120 LDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIVEREEEIERFIAQEYWKIIA----KC 175
Query: 554 SHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINS---ANFQVIKNSKRSMVRK 610
+H+ + F A LTH+ ++L Q S+ +A +I++++ + V + K+ RK
Sbjct: 176 AHA--STEFEARLTHYNEEKLQQFSVTQQEQAHEIKKQLIAQAQGFLTVAQIDKKQRKRK 233
Query: 611 NPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDE 670
P+ITSTLQQ+AA KL F+A TM +AQ+LYEG+ + GT GLITYMRTD ++++ E
Sbjct: 234 PSPPFITSTLQQEAARKLGFTARKTMMVAQQLYEGIDIGTGTV-GLITYMRTDSVNLAKE 292
Query: 671 AAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDC 730
A EIR I +RY + P PR Y K KNAQEAHEAIRPT I+R P M+ G L D
Sbjct: 293 AIDEIRDYITQRYKGDNCPN-SPRIYKTKSKNAQEAHEAIRPTSIKRTPEMVQGSLTSDQ 351
Query: 731 LKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGA 790
LKLYSLIW RT+A QM A + + VD + + FR++ S + F GF + YE+ G
Sbjct: 352 LKLYSLIWKRTVASQMADAILDTVSVDF-SCGKGNTFRANGSTIAFPGFLSVYEE---GR 407
Query: 791 IRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIG 850
K+ + D+ IL + G+ + + ++E QH T+PP RYSE +LVK LEE IG
Sbjct: 408 DDSKDEDNEDK-----ILPAFNVGEKIKVSDIETNQHFTEPPPRYSEATLVKALEEYDIG 462
Query: 851 RPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDN 910
RPSTYAS + LQ R YV V+ + P GR+V+ FL++YF+ DY FTA +E LD
Sbjct: 463 RPSTYASIIHTLQQREYVVVEKKRFLPTDVGRIVNRFLTNYFTRYVDYQFTAGLEDTLDA 522
Query: 911 VSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVC 970
++ G +W +L ++W F + Q++ + E+ + L D CP C
Sbjct: 523 IARGEKDWIPVLEEFWQPF-----------VQQIQNIDEQVQRKDVTTEL--LDEKCPKC 569
Query: 971 GEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHH- 1028
+ I R G G FIGC +P C+Y +D EP+++
Sbjct: 570 QKPLSI----RLGKRGRFIGCTGYPDCDYT----------QDISNPEGEKSEPEVVEGRS 615
Query: 1029 -PASKEKVLLKSGPYGFYV 1046
P + +K+G YG ++
Sbjct: 616 CPLCHGALHIKTGRYGKFI 634
>gi|383318244|ref|YP_005379086.1| DNA topoisomerase I [Frateuria aurantia DSM 6220]
gi|379045348|gb|AFC87404.1| DNA topoisomerase I, bacterial [Frateuria aurantia DSM 6220]
Length = 846
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 310/797 (38%), Positives = 429/797 (53%), Gaps = 55/797 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++++VES KAK I YLG + VL SYGHVRDL + G+V PD DF+M +E+
Sbjct: 3 KNLLIVESPAKAKTINKYLGKDFHVLASYGHVRDLKPKEGAVDPDHDFAMAYEIIERNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I A A+++ LA+D DREGEAI+WHI E+L+++ L E + RVVF EIT+ +
Sbjct: 63 HVDAIAKAARQADDIYLATDLDREGEAISWHISEILRER-GLTEGKQLHRVVFSEITQKA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ RE+ ++V A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKAAVAEPRELSLDMVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F P+EYW+V+A L F A LT KR Q + + +A
Sbjct: 182 REEEIEAFVPREYWSVDADLQHAGG------DFKARLTRLYGKRFEQFDLTNEADAMTAR 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
++ +A V + R+ P+ TSTLQQ+AA KL FS + TM++AQ LYEGV
Sbjct: 236 SRLIAAAGGQLSVTDVGSKERKRRPAPPFTTSTLQQEAARKLGFSTSRTMRVAQGLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L + GLITYMRTD +S++A E+R LI +G+ P + Y K KNAQEA
Sbjct: 296 SLGSEGSVGLITYMRTDATALSEDAVAELRQLIARDFGAESVPA-AVQVYKAKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI-------G 759
HEAIRPT R P ++ L++D KLY LIW RT+ACQM AT+ + VD G
Sbjct: 355 HEAIRPTSALRTPRTIAAFLNDDQRKLYELIWKRTVACQMVHATLNTVSVDFALPQTEGG 414
Query: 760 NADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYL 819
+A FR++ + V GF A YE+ R E+++ R L L+ GD + L
Sbjct: 415 DAG----FRATGTTVVSPGFLAVYEE--GRDQRSAEDDDEGRR-----LPRLQVGDSVPL 463
Query: 820 GEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEF 879
++ QH T+PP RYSE SLVK LEE GIGRPSTYAS ++VL +R YV + SR P
Sbjct: 464 RDILADQHFTEPPPRYSEASLVKALEEYGIGRPSTYASIIQVLLNREYVLLDSRRFKPTD 523
Query: 880 RGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSL 939
GR V FL+ +FS DY FTA +E ELD VS G W L+ +W F
Sbjct: 524 VGRAVGKFLTQHFSRYVDYDFTAHLEDELDAVSRGEEAWVPLMQRFWQPFK--------- 574
Query: 940 HIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYI 999
QV++ E D AS + P G+ + ++ RFG IG
Sbjct: 575 --QQVDEKTETV--DRSEASGARELGFDPKSGKPVSV-RLGRFGPYAAIGTKDDEEKPQF 629
Query: 1000 AKTLYGDDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPK 1058
A G +L+ + + P+ +G E V + G +G +V+ G
Sbjct: 630 ASLRPGQSMHTLSLEEALELFKLPRKLGQAENGDE-VSVGVGRFGPFVKQG-------AV 681
Query: 1059 RASVSHIKDVDSITLEDALELLRYPVNL--GNHPKD-GQPIMLRLARAGFSVRHRRTIAS 1115
AS+ D +I L AL+++ + L KD G I + R G + A
Sbjct: 682 YASLKAEDDPYTIELPRALQIVEEKLLLIANRTIKDFGNGIQVLNGRYGPYITDGDKNAK 741
Query: 1116 VPKNMKPNDVTLEKALE 1132
+PK+ +P ++TLE+ E
Sbjct: 742 IPKDQEPAELTLEQCQE 758
>gi|224826190|ref|ZP_03699293.1| DNA topoisomerase I [Pseudogulbenkiania ferrooxidans 2002]
gi|224601827|gb|EEG08007.1| DNA topoisomerase I [Pseudogulbenkiania ferrooxidans 2002]
Length = 763
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 272/649 (41%), Positives = 372/649 (57%), Gaps = 40/649 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+++VES +KAK ++ YLG +EVL SYGHVRDL +SG+V PD +F+M +++ H
Sbjct: 4 SLLIVESPSKAKTLKKYLGQDFEVLASYGHVRDLVPKSGAVDPDKNFAMKYQLIPRNAKH 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +I A++ A+++ LA+DPDREGEAI+WH+V++L + L + T RVVFHEIT+ ++
Sbjct: 64 VDAITQAVAEADHIYLATDPDREGEAISWHLVQILNNKKLL-KGKTAQRVVFHEITKNAV 122
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+I LV A ARRALDYL+GFN+SP+LW+K+ SAGRVQS AL LIC+R
Sbjct: 123 LDAIANPRDISQELVDAQQARRALDYLVGFNLSPMLWKKIRRGLSAGRVQSPALRLICER 182
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F QEYW++ LD + F A L +L+Q I S D
Sbjct: 183 ENEIRAFTEQEYWSIH--LDSHKGRQ----KFGAKLFELGGNKLDQFDIPSEAIQADTLA 236
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ V K+ R P+ TSTLQQ+A KL + TM+ AQ+LYEGV +
Sbjct: 237 RLAEQPATVSNVDKKKKTRNPAAPFTTSTLQQEAVRKLGMTTDRTMRTAQQLYEGVDIGQ 296
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GT GLITYMRTD + +S+EA EIR I ++ P+ P + K KNAQEAHEAI
Sbjct: 297 GTV-GLITYMRTDAVVLSNEALTEIRGYIESQFEPAFLPK-APVTFKNKSKNAQEAHEAI 354
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT I R PA + L D KLY +IW RT+ACQM PA VDI + VFR++
Sbjct: 355 RPTSIERTPAAMKPFLTTDQFKLYEMIWKRTLACQMAPAKFDTTSVDITVGEG--VFRAT 412
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
F GF A YE+ A A L L+ GD L + ++ +QH TQ
Sbjct: 413 GQVQTFAGFLAVYEEDVDDAEDEDN----------AKLPVLEVGDVLPVDKLYGEQHFTQ 462
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP R+SE SLVK LEE GIGRPSTYAS + L+DR YV + + P G +V+ FL+
Sbjct: 463 PPPRFSEASLVKALEEFGIGRPSTYASIISTLKDREYVVLDKKRFLPTDTGEIVNKFLTE 522
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + DY+FTA +E +LD ++ G EW ++ +W + + +SL +V
Sbjct: 523 HFGQYVDYNFTAKLEDQLDEIANGRREWVPVMETFWKGLAKQLSEKESLSRAEVTT---- 578
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNY 998
+SL D +CP C + I +FG G FI C +P C+Y
Sbjct: 579 ---ESL-------DEACPKCSKPLQI----KFGKRGRFIACTGYPECDY 613
>gi|39997644|ref|NP_953595.1| DNA topoisomerase I [Geobacter sulfurreducens PCA]
gi|409912998|ref|YP_006891463.1| DNA topoisomerase I [Geobacter sulfurreducens KN400]
gi|39984536|gb|AAR35922.1| DNA topoisomerase I [Geobacter sulfurreducens PCA]
gi|298506584|gb|ADI85307.1| DNA topoisomerase I [Geobacter sulfurreducens KN400]
Length = 757
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 284/663 (42%), Positives = 383/663 (57%), Gaps = 42/663 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ +LG Y+VL SYGHVR L ++ GSV + DF + V + H+
Sbjct: 5 LVIVESPAKAKTIEKFLGPDYKVLASYGHVRALPSKQGSVDVEHDFEPRYAVLPESKRHI 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+IK L +++L+LA+DPDREGEAI+WH++ L + + V RVVFHEIT+ +I
Sbjct: 65 DAIKKELKASDSLLLATDPDREGEAISWHLLAALGVKPE-KPPVPVRRVVFHEITKDAIV 123
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R+I +LV A AR LDYL+GFN+SP LW+K+ SAGRVQS AL LIC+RE
Sbjct: 124 HAVENPRDISQDLVDAQQARSILDYLVGFNLSPFLWKKIRYGLSAGRVQSVALRLICERE 183
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI F+ QEYWT+ A L K+ A+L + K+L++ I A + +
Sbjct: 184 KEIQAFQSQEYWTIGAELAKEGGQKCT-----ANLVEAEGKKLDKFDIPDQAAADRLVKA 238
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ +A F V K +K R P+ TSTLQQ+AA KL FSA TM AQKLYEGV + +G
Sbjct: 239 LENATFTVDKVTKSERKRTPAPPFTTSTLQQEAARKLGFSAKKTMATAQKLYEGVAIDEG 298
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD + +S++A +E +I YG +A + PR Y K KNAQEAHEA+R
Sbjct: 299 LV-GLITYMRTDSVVLSNQALQEAHQVITSLYGPEYALAK-PRFYKNKAKNAQEAHEAVR 356
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT I R PA L L D KLY LIW RT+ACQM A + Q VDIG A + FR++
Sbjct: 357 PTSIARTPAELKKYLSSDQFKLYDLIWKRTVACQMAEALLDQTSVDIG-AGKGYRFRAAG 415
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
+ + F GF Y E VD A E L L G+ L L ++ +QH TQ
Sbjct: 416 TVIRFPGFMKLYIEGVDDQA-----------EEKEGTLPPLTEGELLKLLKLLPEQHFTQ 464
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E SLVK LEE GIGRPSTYAS + L +R Y + S+ PE G +V+ L++
Sbjct: 465 PPPRYTEASLVKTLEEYGIGRPSTYASIMNTLLERKYARLDSKRFIPEDVGMVVNDLLTN 524
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F+ DY+FTA +E ELD VS G WK LL ++W F +L++
Sbjct: 525 HFTTYVDYNFTATLEEELDQVSRGEKRWKPLLREFWEPFQG---------------LLKQ 569
Query: 951 TFGDSLFASLPNK--DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPR-CNYIAKTLYGDD 1007
G+ A L + D +CP CG+ L+ K+ + G FI C+ + C Y G+
Sbjct: 570 KEGEVSKADLTTEATDEACPECGK-PLVVKLGKRGK--FIACSGYKEGCTYTRNIDQGEG 626
Query: 1008 DEE 1010
E+
Sbjct: 627 REQ 629
>gi|322420082|ref|YP_004199305.1| DNA topoisomerase I [Geobacter sp. M18]
gi|320126469|gb|ADW14029.1| DNA topoisomerase I [Geobacter sp. M18]
Length = 779
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 275/673 (40%), Positives = 383/673 (56%), Gaps = 56/673 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
+++V+VES KAK I+ +LG Y+VL S+GHVR L ++ GSV + +F + V +
Sbjct: 3 QNLVIVESPAKAKTIEKFLGPEYKVLASFGHVRALPSKQGSVDVEHEFEPKYAVLPESKK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +IK + G +L+LA+DPDREGEAI+WH++ L + + RVVFHEIT+ +
Sbjct: 63 HIDAIKKEMKGITSLLLATDPDREGEAISWHLLAALGLDGKKKASFDIKRVVFHEITKDA 122
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I A+Q R I +LV A AR LDYL+GF +SP LW+K+ SAGRVQS AL LIC+
Sbjct: 123 IVHAVQHPRGISVDLVDAQQARSILDYLVGFTLSPFLWKKIRYGLSAGRVQSVALRLICE 182
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI---------- 579
RE EI FK QEYWT+ A L+ + +L A L + K+L++ I
Sbjct: 183 REKEIQAFKEQEYWTIGAKLETAKKQALT-----AALVEAEGKKLSKFDIPNQEAAFRLF 237
Query: 580 ------------GSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANK 627
G A + + + ++V K +K R+ P+ TSTLQQ+AA K
Sbjct: 238 GLLGGKEFPKQEGEEGSAPLVVKAPVNPEYRVDKVTKSERKRQPSPPFTTSTLQQEAARK 297
Query: 628 LNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHH 687
L FSA TM AQKLYEG+ + +G A GLITYMRTD + +S+ A ++ R LI YG +
Sbjct: 298 LGFSAKKTMSTAQKLYEGIDVGEG-AVGLITYMRTDSVALSNVALEDARQLITSLYGKEY 356
Query: 688 APEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQ 747
A E+ PR + K KNAQEAHEA+RPT I + P + L D KLY LIW RT+ACQM
Sbjct: 357 ALEK-PRFFKNKSKNAQEAHEAVRPTYISKTPIEVKKFLTSDQFKLYDLIWKRTVACQMA 415
Query: 748 PATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFA 806
A + Q V+I A E FR + + + F GF Y E VD +E + E
Sbjct: 416 EALLDQTSVEI-TAGEGFRFRVAGTVIRFAGFMKLYIEGVD---------DEAEDKEKEG 465
Query: 807 ILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRN 866
+L LK GD L L ++ +QH TQPP RY+E +LVK LEE GIGRPSTYAS + L +R
Sbjct: 466 MLPPLKEGDILKLQQLLPEQHFTQPPPRYTEATLVKTLEEYGIGRPSTYASIMNTLTERK 525
Query: 867 YVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYW 926
Y + + +PE G +VS L+++F++ DY+FTA++E +LD VS G +W+ LL ++W
Sbjct: 526 YARLDKKRFFPEDVGMVVSDLLTNHFNQYVDYNFTANLEEQLDMVSRGEKQWRPLLHEFW 585
Query: 927 SRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGY 986
F + + + + + E T D CP CG+ L+ K+ +FG
Sbjct: 586 GPFINLLKLKEG-EVSKSDLTTEAT------------DEVCPECGK-PLVVKLGKFGK-- 629
Query: 987 FIGCNQHPRCNYI 999
F C +P C YI
Sbjct: 630 FYACTGYPECRYI 642
>gi|319785843|ref|YP_004145318.1| DNA topoisomerase I [Pseudoxanthomonas suwonensis 11-1]
gi|317464355|gb|ADV26087.1| DNA topoisomerase I [Pseudoxanthomonas suwonensis 11-1]
Length = 832
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 307/809 (37%), Positives = 445/809 (55%), Gaps = 63/809 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V P+ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPERGFAMRYDLIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A A+++ LA+DPDREGEAI+WHI E+L+++ L + + RVVF EIT +
Sbjct: 63 HVEAIAKAARSADDIWLATDPDREGEAISWHIAEILKER-GLLDGKPLRRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMTQPRTIAGELVDAQQARRALDYLVGFNLSPVLWRKVQPGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ FK +EYW++ A L +H+ FS A L ++ Q +I G EA
Sbjct: 182 REEEIEAFKAREYWSIGAEL----AHAAQPFS--AKLVKLDGQKFEQFTITDGESAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ + V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAAGALHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L + GLI+YMRTD +++S EA EIR +I YG+ P++ P Y K KNAQEA
Sbjct: 296 TLGEEGTVGLISYMRTDSVNLSQEAVAEIRDVIARDYGTASVPDK-PNTYQTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT R P ++ L +D +LY L+W R +A QM PAT+ + VD+ + V
Sbjct: 355 HEAIRPTSALRTPGSVARFLTDDERRLYELVWKRAVASQMVPATLNTVSVDLAAGSDH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V F GF A YE+ + E+E+ R L LK G+ + L + Q
Sbjct: 414 FRASGTTVVFPGFLAVYEE--GKDTKTAEDEDEGRK-----LPPLKPGERVPLDRIHADQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS ++ L R Y ++ R P GR VS
Sbjct: 467 HFTQPPPRFTEAALVKALEEYGIGRPSTYASIIQTLLFRKYAEMEGRAFRPTDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA +E ELD VS G EW L+ +W+ F + ++
Sbjct: 527 FLSGHFTRYVDYDFTARLEDELDAVSRGEEEWVPLMERFWAPFKEL--------VEDKKE 578
Query: 947 MLEKTFGDSLFASLPNKDRSC---PVCGEGTLIFKVSRFGAGYFIGC---NQHPRCNYI- 999
L++T S RS P G+ + ++ RFG IG + P+ +
Sbjct: 579 SLDRTDAGS--------SRSLGIDPKSGK-EVSARIGRFGPMVQIGTVDDEEKPKFASLQ 629
Query: 1000 -AKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPK 1058
+++Y ED L+ D P+ +G ++ ++V + G +G + + G + Y
Sbjct: 630 PGQSIYS-ISLEDALKL---FDMPRNLGE--SNGQQVSVGIGRFGPFAKRG---STY--- 677
Query: 1059 RASVSHIKDVDSITLEDALELLRYPVNLGNH----PKDGQPIMLRLARAGFSVRHRRTIA 1114
AS+ D I L A+EL+ + + G I + R G + +
Sbjct: 678 -ASLKKEDDPYKIDLARAVELIEEKEEIARNRIIKEFPGSDIQVLNGRFGPYISDGKLNG 736
Query: 1115 SVPKNMKPNDVTLEKALEFL--SGKDVRR 1141
+PK+ +P+ +TLE+ + L +GK RR
Sbjct: 737 KIPKDREPSTLTLEEVQQLLAETGKPARR 765
>gi|389783174|ref|ZP_10194668.1| DNA topoisomerase I [Rhodanobacter spathiphylli B39]
gi|388435112|gb|EIL92030.1| DNA topoisomerase I [Rhodanobacter spathiphylli B39]
Length = 837
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 306/796 (38%), Positives = 424/796 (53%), Gaps = 100/796 (12%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++++VES KAK I YLG ++VL SYGHVRDL + G+V + F+M +EV
Sbjct: 3 KNLLIVESPAKAKTINKYLGKDFQVLASYGHVRDLKPKEGAVDTEHGFAMTYEVIERNQK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I A A+++ LA+D DREGEAI+WHI E+L ++ L + + RVVF EIT +
Sbjct: 63 HVDAIAKAAKLADDIYLATDLDREGEAISWHISEILGER-GLTKGKQLHRVVFSEITPKA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ A R++ +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKAAVAAPRQLSHDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FK +EYWTVEA L + F A L+ K+ Q + S T A
Sbjct: 182 REEEIEAFKAREYWTVEAQLKHVDG------DFSARLSRLNGKKFEQFDLTSETAAHAAR 235
Query: 590 QKINS---ANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ + + V + S + R+ P+ TSTLQQ+AA KL F+ + TMK+AQ LYEGV
Sbjct: 236 EALKAAARGRLVVSEVSSKERKRRPAAPFTTSTLQQEAARKLGFTTSRTMKVAQGLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L GLITYMRTD + D+A E+R LI +G H P+ P+ Y K KNAQEA
Sbjct: 296 ALGSEGNVGLITYMRTDSTMLGDDAMAELRQLIARDFGGHALPD-APQVYKTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQV-----DIGNA 761
HEAIRPT P ++ L++D KLY LIW RT+ACQM AT+ + V D+
Sbjct: 355 HEAIRPTSAMHTPKSVAAFLNDDQRKLYELIWKRTVACQMIHATLNTVSVEFALPDVAGG 414
Query: 762 DESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGE 821
D S FRS+ + V GF A YE+ G+ + +++++ L L+ G+ + L E
Sbjct: 415 DAS--FRSTGTTVVDPGFLAVYEE---GSDQKNADDDDEGRR----LPRLEKGEAVPLHE 465
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRG 881
+ QH T+PP RYSE SLVK LEE GIGRPSTYAS ++VLQ+R YV + SR P G
Sbjct: 466 IVADQHFTEPPPRYSEASLVKALEEHGIGRPSTYASIIQVLQNREYVYLDSRRFKPSDVG 525
Query: 882 RMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI 941
R VS FL+ +F++ DY FTA +E ELD VS G W L+ +W F
Sbjct: 526 RAVSKFLTQHFTQYVDYDFTAKLEDELDAVSRGEEAWVPLMERFWKPFK----------- 574
Query: 942 HQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK 1001
QV++ E D A+ + + P G+ + ++ RFG Y A
Sbjct: 575 QQVDEKAESV--DRSEATGARELGTDPKTGKPVFV-RLGRFGP-------------YAA- 617
Query: 1002 TLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRAS 1061
GD D E+ LQ AS
Sbjct: 618 --IGDKDSEEKLQ--------------------------------------------FAS 631
Query: 1062 VSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
+ + + +I L +ALEL + P LG ++G + + + R G V+ T AS+
Sbjct: 632 LRPGQSMHTIELAEALELFKLPRKLG-QAENGDEVSVAIGRFGPFVKQGSTYASLKPEDD 690
Query: 1122 PNDVTLEKALEFLSGK 1137
P + L +AL+ + K
Sbjct: 691 PYTIELPRALQIVQEK 706
>gi|194367363|ref|YP_002029973.1| DNA topoisomerase I [Stenotrophomonas maltophilia R551-3]
gi|194350167|gb|ACF53290.1| DNA topoisomerase I [Stenotrophomonas maltophilia R551-3]
Length = 824
Score = 471 bits (1212), Expect = e-129, Method: Compositional matrix adjust.
Identities = 261/583 (44%), Positives = 354/583 (60%), Gaps = 19/583 (3%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG Y VL SYGHVRDL + G+V PD+ F+M ++V
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDYTVLASYGHVRDLIPKEGAVDPDNGFAMHYDVIDKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I A A++++LA+DPDREGEAI+WHI E+L+++ L ++ + RVVF EIT +
Sbjct: 63 HVDAIAKAAKSADDILLATDPDREGEAISWHIAEILKER-GLVKDKPMQRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I ++LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAISQPRAIASDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F +EYW++ A H F A L ++ Q ++ G EA
Sbjct: 182 REEEIEAFIAREYWSIAAECAHPSQH------FNAKLIKLDGQKFEQFTVTDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGALHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ D GLI+YMRTD +++S +A EIR +I YG P++ P Y K KNAQEA
Sbjct: 296 AIGDEGTVGLISYMRTDSVNLSQDALAEIRDVIARDYGIASLPDQ-PNTYQTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA +S L +D KLY LIW R +ACQM PAT+ + VD+ +A V
Sbjct: 355 HEAVRPTSALRTPAQVSRYLTDDERKLYELIWKRAVACQMIPATLNTVSVDL-SAGSDHV 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ K+N+ + + L ++K GD + L + Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE-------GKDNKSAEDEDEGRKLPAMKPGDRIPLERIVADQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS ++ L R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRFTEAALVKALEEYGIGRPSTYASIIQTLLFRKYVEMEGRSFRPSDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF 929
FLS +F+ DY FTA +E ELD VS G EW L+ +W F
Sbjct: 527 FLSSHFTRYVDYDFTAKLEDELDAVSRGEEEWIPLMSRFWEPF 569
Score = 45.1 bits (105), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 1025 IGHHPASKEKVLLKSGPYGFYVQLGE--DRTGYLPKRASVSHIKDVDSITLEDALELLRY 1082
+G P + + V ++ G +G Y +G + PK AS+ + + +ITLEDALEL
Sbjct: 591 LGTDPKTGKPVSVRLGRFGPYAAIGSTAEDAEEKPKFASLRPGQSMHTITLEDALELFLM 650
Query: 1083 PVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKD 1138
P LG G+ + + + R G + T AS+ K P + L +A+ + K+
Sbjct: 651 PRALGED--KGEDVSVGIGRFGPFAKRGSTYASLKKEDDPYTIDLARAVFLIEEKE 704
>gi|440732286|ref|ZP_20912236.1| DNA topoisomerase I [Xanthomonas translucens DAR61454]
gi|440369600|gb|ELQ06570.1| DNA topoisomerase I [Xanthomonas translucens DAR61454]
Length = 828
Score = 471 bits (1211), Expect = e-129, Method: Compositional matrix adjust.
Identities = 313/821 (38%), Positives = 437/821 (53%), Gaps = 85/821 (10%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PDD F+M + +
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFHVLASYGHVRDLIPKEGAVDPDDGFAMRYALIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A A+++ LA+DPDREGEAI+WHI E+L+++ L + + RVVF EIT +
Sbjct: 63 HVEAIAKAAKVADDIYLATDPDREGEAISWHIAEILKERGLLKDK-PLHRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R+I +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMANPRQIAVDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F +EYW++ A H F+ A L ++ Q +I G EA
Sbjct: 182 REEEIEAFVAREYWSIGADC----LHPSQPFA--AKLVKLDGQKFEQFTITDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ QK V + + R+ P+ TSTLQQ+A+ KL F+ + TM++AQKLYEGV
Sbjct: 236 MRLQKAAQGALHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTSRTMRVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ D GLI+YMRTD +++S +A EIR +I +G+ P++ P Y K KNAQEA
Sbjct: 296 TVGDEGTVGLISYMRTDSVNLSQDALAEIRDVIARDFGTGALPDK-PNMYQTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT R PA ++ LD+D +LY LIW R +ACQM PAT+ + V++ +E
Sbjct: 355 HEAIRPTAALRTPAQMAKYLDDDGRRLYELIWKRAVACQMVPATMNTVTVELAAGNEH-S 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L +K GD + L + Q
Sbjct: 414 FRASGTTVIDPGFLAVYEE--GKDQKAAEDEDEGRK-----LPPMKPGDRIPLDRIHTDQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP R+SE SLVK LEE GIGRPSTYAS ++ L R YV + +R P GR VS
Sbjct: 467 HFTEPPPRFSEASLVKTLEEYGIGRPSTYASIIQTLLFRKYVELDARRFRPSDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA +E ELD VS G EW+ L+ +W F + + + E
Sbjct: 527 FLSGHFTRYVDYDFTAKLEDELDAVSRGEEEWRPLMEKFWGPFKELVEEKKE-SVDRSEA 585
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ G + P G+ + ++ RFG IG +
Sbjct: 586 TGARELG------------TDPKTGKPVSV-RLGRFGPYAAIGST-------------AE 619
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPA-SKEKVLLKSGPYGFYV--QLGED----------RT 1053
D E D+PK P S + L+ F + LGED R
Sbjct: 620 DAE----------DKPKFASLRPGQSMHTITLEDALELFLMPRALGEDKGEDVSVGIGRF 669
Query: 1054 GYLPKRASV--SHIKDVDSIT---------LEDALELLRYPVNLGNHPKDGQPIMLRLAR 1102
G KR SV S KD D T +E+ E+ R + + +P G I + R
Sbjct: 670 GPFAKRGSVYASLKKDDDPYTIDLARAVFLIEEKEEIARNRI-IKEYP--GSDIQVLNGR 726
Query: 1103 AGFSVRHRRTIASVPKNMKPNDVTLEKALEFL--SGKDVRR 1141
G + + +PK+ +P +TLE+ + L +GK RR
Sbjct: 727 FGPYISDGKLNGKIPKDREPATLTLEEVQKLLEETGKPARR 767
>gi|424793174|ref|ZP_18219319.1| DNA topoisomerase I [Xanthomonas translucens pv. graminis ART-Xtg29]
gi|422796760|gb|EKU25213.1| DNA topoisomerase I [Xanthomonas translucens pv. graminis ART-Xtg29]
Length = 828
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 312/821 (38%), Positives = 438/821 (53%), Gaps = 85/821 (10%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PDD F+M + +
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFHVLASYGHVRDLIPKEGAVDPDDGFAMRYALIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A A+++ LA+DPDREGEAI+WHI E+L+++ L + + RVVF EIT +
Sbjct: 63 HVEAIAKAAKVADDIYLATDPDREGEAISWHIAEILKERGLLKDK-PLHRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R+I +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMANPRQIAVDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F +EYW++ A H F+ A L ++ Q +I G EA
Sbjct: 182 REEEIEAFVAREYWSIGADC----LHPSQPFA--AKLVKLDGQKFEQFTITDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ QK V + + R+ P+ TSTLQQ+A+ KL F+ + TM++AQKLYEGV
Sbjct: 236 MRLQKAAQGALHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTSRTMRVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ D GLI+YMRTD +++S +A EIR +I +G+ P++ P Y K KNAQEA
Sbjct: 296 TVGDEGTVGLISYMRTDSVNLSQDALAEIRDVIARDFGTGALPDK-PNMYQTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT R PA ++ LD+D +LY LIW R +ACQM PAT+ + V++ +E
Sbjct: 355 HEAIRPTAALRTPAQMAKYLDDDGRRLYELIWKRAVACQMVPATMNTVTVELAAGNEH-S 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L ++K GD + L + Q
Sbjct: 414 FRASGTTVIDPGFLAVYEE--GKDQKAAEDEDEGRK-----LPAMKPGDRIPLDRIHTDQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP R+SE SLVK LEE GIGRPSTYAS ++ L R YV + +R P GR VS
Sbjct: 467 HFTEPPPRFSEASLVKTLEEYGIGRPSTYASIIQTLLFRKYVELDARRFRPSDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA +E ELD VS G EW+ L+ +W F + + + E
Sbjct: 527 FLSGHFTRYVDYDFTAKLEDELDAVSRGEEEWRPLMEKFWGPFKELVEEKKE-SVDRSEA 585
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ G + P G+ + ++ RFG IG +
Sbjct: 586 TGARELG------------TDPKTGKPVSV-RLGRFGPYAAIGST-------------AE 619
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPA-SKEKVLLKSGPYGFYV--QLGED----------RT 1053
D E D+PK P S + L+ F + LGED R
Sbjct: 620 DAE----------DKPKFASLRPGQSMHTITLEDALELFLMPRALGEDKGEDVSVGIGRF 669
Query: 1054 GYLPKRASV--SHIKDVDSIT---------LEDALELLRYPVNLGNHPKDGQPIMLRLAR 1102
G KR SV S K+ D T +E+ E+ R + + +P G I + R
Sbjct: 670 GPFAKRGSVYASLKKEDDPYTIDLARAVFLIEEKEEIARNRI-IKEYP--GSDIQVLNGR 726
Query: 1103 AGFSVRHRRTIASVPKNMKPNDVTLEKALEFL--SGKDVRR 1141
G + + +PK+ +P +TLE+ + L +GK RR
Sbjct: 727 FGPYISDGKLNGKIPKDREPATLTLEEVQKLLEETGKPARR 767
>gi|433679673|ref|ZP_20511378.1| DNA topoisomerase I [Xanthomonas translucens pv. translucens DSM
18974]
gi|430815210|emb|CCP41980.1| DNA topoisomerase I [Xanthomonas translucens pv. translucens DSM
18974]
Length = 827
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 312/821 (38%), Positives = 437/821 (53%), Gaps = 85/821 (10%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PDD F+M + +
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFHVLASYGHVRDLIPKEGAVDPDDGFAMRYALIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A A+++ LA+DPDREGEAI+WHI E+L+++ L + + RVVF EIT +
Sbjct: 63 HVEAIAKAAKVADDIYLATDPDREGEAISWHIAEILKERGLLKDK-PLHRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R+I +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMANPRQIAVDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F +EYW++ A H F+ A L ++ Q +I G EA
Sbjct: 182 REEEIEAFVAREYWSIGADC----LHPSQPFA--AKLVKLDGQKFEQFTITDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ QK V + + R+ P+ TSTLQQ+A+ KL F+ + TM++AQKLYEGV
Sbjct: 236 MRLQKAAQGALHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTSRTMRVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ D GLI+YMRTD +++S +A EIR +I +G+ P++ P Y K KNAQEA
Sbjct: 296 TVGDEGTVGLISYMRTDSVNLSQDALAEIRDVIARDFGTGALPDK-PNMYQTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT R PA ++ LD+D +LY LIW R +ACQM PAT+ + V++ +E
Sbjct: 355 HEAIRPTAALRTPAQMAKYLDDDGRRLYELIWKRAVACQMVPATMNTVTVELAAGNEH-S 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L +K GD + L + Q
Sbjct: 414 FRASGTTVIDPGFLAVYEE--GKDQKAAEDEDEGRK-----LPPMKPGDRIPLDRIHTDQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP R+SE SLVK LEE GIGRPSTYAS ++ L R YV + +R P GR VS
Sbjct: 467 HFTEPPPRFSEASLVKTLEEYGIGRPSTYASIIQTLLFRKYVELDARRFRPSDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA +E ELD VS G EW+ L+ +W F + + + E
Sbjct: 527 FLSGHFTRYVDYDFTAKLEDELDAVSRGEEEWRPLMEKFWGPFKELVEEKKE-SVDRSEA 585
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
+ G + P G+ + ++ RFG IG +
Sbjct: 586 TGARELG------------TDPKTGKPVSV-RLGRFGPYAAIGST-------------AE 619
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPA-SKEKVLLKSGPYGFYV--QLGED----------RT 1053
D E D+PK P S + L+ F + LGED R
Sbjct: 620 DAE----------DKPKFASLRPGQSMHTITLEDALELFLMPRALGEDKGEDVSVGIGRF 669
Query: 1054 GYLPKRASV--SHIKDVDSIT---------LEDALELLRYPVNLGNHPKDGQPIMLRLAR 1102
G KR SV S K+ D T +E+ E+ R + + +P G I + R
Sbjct: 670 GPFAKRGSVYASLKKEDDPYTIDLARAVFLIEEKEEIARNRI-IKEYP--GSDIQVLNGR 726
Query: 1103 AGFSVRHRRTIASVPKNMKPNDVTLEKALEFL--SGKDVRR 1141
G + + +PK+ +P +TLE+ + L +GK RR
Sbjct: 727 FGPYISDGKLNGKIPKDREPATLTLEEVQKLLEETGKPARR 767
>gi|380510239|ref|ZP_09853646.1| DNA topoisomerase I [Xanthomonas sacchari NCPPB 4393]
Length = 828
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 262/583 (44%), Positives = 353/583 (60%), Gaps = 19/583 (3%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PDD F+M + +
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFHVLASYGHVRDLIPKEGAVDPDDGFAMRYALIDKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A AE++ LA+DPDREGEAI+WHI E+LQ++ L + + RVVF EIT +
Sbjct: 63 HVEAIAKAAKAAEDIYLATDPDREGEAISWHIAEILQER-GLLKGKPLHRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R+I +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMAQPRQIAGDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F +EYW++ A H F A L ++ Q +I G EA
Sbjct: 182 REEEIEAFVAREYWSIAADCAHPSQH------FNAKLIKLDGQKFEQFTITDGDTAEAAR 235
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 236 LRIQQAAQGALHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ D GLI+YMRTD +++S +A EIR +I YG P++ P Y K KNAQEA
Sbjct: 296 AIGDEGTVGLISYMRTDSVNLSQDALAEIRDVIARDYGIASLPDQ-PNTYQTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R P+ ++ L +D KLY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 355 HEAVRPTSALRTPSQVARFLTDDERKLYELIWKRAVACQMIPATLNTVSVDLSAGSEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ K+N+ + + L ++K GD + L + +Q
Sbjct: 414 FRASGTTVVVPGFLAVYEE-------GKDNKSAEDEDEGRKLPAMKPGDRVPLERILAEQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RY+E +LVK LEE GIGRPSTYAS ++ L R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRYTEAALVKALEEYGIGRPSTYASIIQTLLFRKYVEMEGRSFRPSDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF 929
FLS +F++ DY FTA +E ELD VS G EW L+ +W F
Sbjct: 527 FLSSHFTQYVDYDFTAKLEDELDAVSRGEEEWIPLMSRFWEPF 569
Score = 43.1 bits (100), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 1025 IGHHPASKEKVLLKSGPYGFYVQLG------EDRTGYLPKRASVSHIKDVDSITLEDALE 1078
+G P + + V ++ G +G Y +G ED+ PK AS+ + + +ITLE+ALE
Sbjct: 591 LGTDPKTGKPVSVRLGRFGPYAAIGSTAEDAEDK----PKFASLRPGQSMHTITLEEALE 646
Query: 1079 LLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKD 1138
L P +LG G+ + + + R G + AS+ K P + L +A+ + K+
Sbjct: 647 LFLMPRSLGQD--KGEEVSVGIGRFGPFAKRGSVYASLKKEDDPYTIDLARAVFLIEEKE 704
>gi|28199638|ref|NP_779952.1| DNA topoisomerase I [Xylella fastidiosa Temecula1]
gi|182682383|ref|YP_001830543.1| DNA topoisomerase I [Xylella fastidiosa M23]
gi|417558652|ref|ZP_12209614.1| Topoisomerase IA TopA [Xylella fastidiosa EB92.1]
gi|32130203|sp|Q87AQ6.1|TOP1_XYLFT RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase I;
AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName: Full=Untwisting
enzyme
gi|28057753|gb|AAO29601.1| DNA topoisomerase I [Xylella fastidiosa Temecula1]
gi|182632493|gb|ACB93269.1| DNA topoisomerase I [Xylella fastidiosa M23]
gi|338178732|gb|EGO81715.1| Topoisomerase IA TopA [Xylella fastidiosa EB92.1]
Length = 815
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 311/849 (36%), Positives = 450/849 (53%), Gaps = 105/849 (12%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V P++ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPENGFAMRYDLIDKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A A+++ LA+DPDREGEAI+WHI E+L+++ L + + R+VF EIT +
Sbjct: 63 HVEAITKAAKTADSIYLATDPDREGEAISWHISEILKERGLLKDK-PMQRIVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+Q R I ++LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAIQKPRMIASDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F +EYW++ A H F A L K+ Q +I A +
Sbjct: 182 REEEIEAFITREYWSIHAECTHPAQH------FSAKLIKLDGKKFEQFTITDSDTAAAAQ 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
++I A + + + R+ P+ITSTLQQ+A+ KL F+ TM++AQKLYEG+
Sbjct: 236 RRIQQAAQGRLHITDVTNKERKRRPAPPFITSTLQQEASRKLGFTTRKTMQIAQKLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L + + GLITYMRTD +++S +A EIR +I YG++ P++ P Y K KNAQEA
Sbjct: 296 ALGEEGSVGLITYMRTDSVNLSLDALSEIRDIIARDYGTNALPDK-PNVYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R P ++ L + +LY L+W RT+A QM PA + VD+ +E V
Sbjct: 355 HEAVRPTSALRTPTQVAPYLSNEEHRLYELVWKRTVASQMIPAILNTTSVDLAAGNEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ + V GF A YE+ K+N+ + + L +KTG+ + L + +Q
Sbjct: 414 FRATGTTVVVQGFLAVYEE-------GKDNKNAEDDDEGRKLPVMKTGENVPLERILTEQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RY+E +LVK LEE GIGRPSTYAS ++ L R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRYTEAALVKALEEYGIGRPSTYASIIQTLLFRKYVDMEGRSFRPTDIGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYC---------TCAQ 937
FLS +F++ DY FTA +E ELD +S G EW L+ +W F T A
Sbjct: 527 FLSSHFTQYVDYDFTAHLEDELDAISRGEEEWIPLMKKFWVPFKELVEDKKDSLDKTDAG 586
Query: 938 SLHIHQVEKMLEKT-------FGDSL------------FASL-PNKDRSCPVCGEGTLIF 977
S+ + ++ K FG + FASL PN+ E +F
Sbjct: 587 SVRLLGIDPTSGKEVSARIGRFGPMVQIGTVDDEEKPRFASLRPNQSIYSISLEEAIELF 646
Query: 978 KVSR-----------FGAGYFIGCNQHPRCNYIAKTLYGDDD--------------EEDT 1012
K+ R G G F G Y+ +L +DD E++
Sbjct: 647 KMPRVLGEDQSQQVSVGIGRF-GPFAKRGSTYV--SLKSEDDPYTIDLARATLLINEKEE 703
Query: 1013 LQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSIT 1072
+ RN ++I S+ +VL +G +G Y+ G+ G +PK ++ S+T
Sbjct: 704 IARN------RIIKDFENSQIQVL--NGRFGPYISDGK-LNGKIPKD------REPASLT 748
Query: 1073 LEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALE 1132
LE+A +LL +N G + AR FS + T K T KA +
Sbjct: 749 LEEAQQLL---INTG-----------KPARKNFSTKKTATKNETRKQTTKKRTTDAKATK 794
Query: 1133 FLSGKDVRR 1141
+S K V++
Sbjct: 795 KVSDKPVKK 803
>gi|71731301|gb|EAO33365.1| DNA topoisomerase I [Xylella fastidiosa subsp. sandyi Ann-1]
Length = 815
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 252/583 (43%), Positives = 356/583 (61%), Gaps = 19/583 (3%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V P++ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPENGFAMRYDLIDKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A A+++ LA+DPDREGEAI+WHI E+L+++ L + + R+VF EIT +
Sbjct: 63 HVEAITKAAKTADSIYLATDPDREGEAISWHISEILKERGLLKDK-PMQRIVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+Q R I ++LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAIQKPRMIASDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F +EYW++ A H F A L K+ Q +I A +
Sbjct: 182 REEEIEAFITREYWSIHAECTHPAQH------FSAKLIKLDGKKFEQFTITDSDTAAAAQ 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
++I A + + + R+ P+ITSTLQQ+A+ KL F+ TM++AQKLYEG+
Sbjct: 236 RRIQQAAQGRLHITDVTNKERKRRPAPPFITSTLQQEASRKLGFTTRKTMQIAQKLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L + + GLITYMRTD +++S +A EIR +I YG++ P++ P Y K KNAQEA
Sbjct: 296 ALGEEGSVGLITYMRTDSVNLSLDALSEIRDIIARDYGTNALPDK-PNVYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R P ++ L + +LY L+W R +A QM PA + VD+ +E V
Sbjct: 355 HEAVRPTSALRTPTQVAPYLSNEEHRLYELVWKRAVASQMIPAILNTTSVDLAAGNEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ + V LGF A YE+ K+N+ + + L +KTG+ + L + +Q
Sbjct: 414 FRATGTTVVVLGFLAVYEE-------GKDNKNAEDDDEGRKLPVMKTGENVPLERILTEQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RY+E +LVK LEE GIGRPSTYAS ++ L R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRYTEAALVKALEEYGIGRPSTYASIIQTLLFRKYVDMEGRSFRPTDIGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF 929
FLS +F++ DY FTA +E ELD +S G EW L+ +W F
Sbjct: 527 FLSSHFTQYVDYDFTAHLEDELDAISRGEEEWIPLMKKFWVPF 569
Score = 43.9 bits (102), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDV 1068
++D+L + T+ +L+G P S ++V + G +G VQ+G P+ AS+ + +
Sbjct: 576 KKDSLDK-TDAGSVRLLGIDPTSGKEVSARIGRFGPMVQIGTVDDEEKPRFASLRPNQSI 634
Query: 1069 DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
SI+LE+A+EL + P LG Q + + + R G + T S+ P + L
Sbjct: 635 YSISLEEAIELFKMPRVLGED--QSQQVSVGIGRFGPFAKRGSTYVSLKSEDDPYTIDLA 692
Query: 1129 KALEFLSGKD 1138
+A ++ K+
Sbjct: 693 RATFLINEKE 702
>gi|285019624|ref|YP_003377335.1| DNA topoisomerase [Xanthomonas albilineans GPE PC73]
gi|283474842|emb|CBA17341.1| putative dna topoisomerase protein [Xanthomonas albilineans GPE
PC73]
Length = 831
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 261/583 (44%), Positives = 355/583 (60%), Gaps = 19/583 (3%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PDD F+M + +
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFHVLASYGHVRDLIPKEGAVDPDDGFAMRYALIDKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +I A A+++ LA+DPDREGEAI+WHI E+LQ++ L + + RVVF EIT +
Sbjct: 63 HVDAIAKAAKAADDIYLATDPDREGEAISWHIAEILQER-GLLKGKPLHRVVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R+I +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAMAHPRQIAGDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F +EYWT+ A +H F+ A L ++ Q +I A+D
Sbjct: 182 REEEIEAFLAREYWTIGAEC----AHPSQPFA--AKLVKLDGQKFEQFTITDGATAEDAR 235
Query: 590 QKINSAN---FQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
++ A V + + R+ P+ TSTLQQ+A+ KL F+ + TM++AQKLYEGV
Sbjct: 236 MRLQKAAQGALHVTDVTSKERKRRPAPPFTTSTLQQEASRKLGFTTSRTMRVAQKLYEGV 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ D GLI+YMRTD +++S +A EIR +I +G+ P++ P Y K KNAQEA
Sbjct: 296 TVGDEGTVGLISYMRTDSVNLSQDALVEIRDVIARDFGTGALPDK-PNTYQTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT R PA ++ LD+D +LY LIW R +ACQM PAT+ + V++ E
Sbjct: 355 HEAIRPTSALRTPAQMAKYLDDDGRRLYELIWKRAVACQMVPATMNTVTVELAAGSEH-S 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L ++K GD + L + Q
Sbjct: 414 FRASGTTVIDPGFLAVYEE--GKDQKAAEDEDEGRK-----LPAMKPGDRIPLDRIHADQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RYSE SLVK LEE GIGRPSTYAS ++ L R YV + +R P GR VS
Sbjct: 467 HFTEPPPRYSEASLVKTLEEYGIGRPSTYASIIQTLMFRKYVELDARRFRPTDVGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF 929
FLS +F+ DY FTA +E +LD VS G EW+ L+ +W F
Sbjct: 527 FLSGHFTRYVDYDFTAKLEDDLDAVSRGEEEWRPLMEKFWGPF 569
Score = 40.8 bits (94), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 1025 IGHHPASKEKVLLKSGPYGFYVQLG------EDRTGYLPKRASVSHIKDVDSITLEDALE 1078
+G P + + V ++ G +G Y +G ED+ PK AS+ + + +ITLE+ALE
Sbjct: 591 LGTDPKTGKPVSVRLGRFGPYAAIGSTAEDAEDK----PKFASLRPGQSMHTITLEEALE 646
Query: 1079 LLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKD 1138
L P LG G + + + R G + AS+ K P + L +A+ + K+
Sbjct: 647 LFLMPRLLGQD--KGDDVSVGIGRFGPFAKRGSVYASLKKEDDPYTIDLARAVFLIEEKE 704
>gi|163849439|ref|YP_001637483.1| DNA topoisomerase I [Chloroflexus aurantiacus J-10-fl]
gi|222527443|ref|YP_002571914.1| DNA topoisomerase I [Chloroflexus sp. Y-400-fl]
gi|163670728|gb|ABY37094.1| DNA topoisomerase I [Chloroflexus aurantiacus J-10-fl]
gi|222451322|gb|ACM55588.1| DNA topoisomerase I [Chloroflexus sp. Y-400-fl]
Length = 776
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 272/654 (41%), Positives = 383/654 (58%), Gaps = 39/654 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ VV+VES KA+ IQ YLG Y+V S GHVRDL ++ + DF+ +E+
Sbjct: 2 GEKVVIVESPAKARTIQKYLGKGYKVASSMGHVRDLPKSGLAIDIEHDFAPSYEI--VKP 59
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+ + AL AE + LA+DPDREGEAIAWHI + ++ L + V RVVF EIT
Sbjct: 60 KVVSELSQALRNAEAVYLATDPDREGEAIAWHITQAVK----LPKKTPVYRVVFQEITRN 115
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+++ ALQ R+I+ NLV+A ARR LD L+G+ +SPLLW K+ SAGRVQS A+ LI
Sbjct: 116 AVQQALQQPRQINQNLVEAQQARRVLDRLVGYQLSPLLWDKVKRGLSAGRVQSVAVRLIV 175
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI++F+PQEYWT+EA L K + F A L K+L + SI + +A+ I
Sbjct: 176 EREREIEQFQPQEYWTIEADLLKDAGVAPRDL-FRAVLIERDGKKLEKFSIENREQAEAI 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ A + V++ ++R R P+ TSTLQQ+AA KL FSA TM LAQ+LYEGV +
Sbjct: 235 VADLQGAAYTVVRVTRRDKRRSPAPPFTTSTLQQEAARKLGFSAKKTMTLAQRLYEGVDI 294
Query: 649 --PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
DG GLITYMRTD + ++ EA E R +I +R+G + P++ P Y K K AQEA
Sbjct: 295 GGEDGMV-GLITYMRTDSVQVAAEAQTEARDVIGKRFGKEYLPDQPP-VYKTKAKGAQEA 352
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD---- 762
HEAIRPT RLP LSG L+ D +LY LIW R +A QM PA VDI
Sbjct: 353 HEAIRPTSSARLPEQLSGKLENDLWRLYDLIWKRFIASQMAPAVFDSTTVDIAATPVVAG 412
Query: 763 -ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGE 821
+ +FR++ S ++F GF A Y + +E+E+++R L L G+ L L E
Sbjct: 413 APAYLFRATGSVLKFPGFLAVY---NVSLDEGEEDEDSERR-----LPPLAEGEALQLVE 464
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRG 881
+ QH T+PP RY+E SLVK+LE LGIGRPSTYAS L +Q+R YV + + L P G
Sbjct: 465 LLPIQHFTEPPPRYTEASLVKELERLGIGRPSTYASILSTIQEREYVEMVDKKLIPTTLG 524
Query: 882 RMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI 941
R+V+ L +F + DY FT+ +E +LD+++ G +W +L +++ F S +
Sbjct: 525 RVVTDLLVEHFGNIVDYDFTSALEQQLDDIAEGSKKWVPVLREFYGPFRS--------TL 576
Query: 942 HQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPR 995
Q ++ + + + L CP CG+G L+ + R G F+ C+++ R
Sbjct: 577 EQAQRQMRNVKREEIVTDL-----DCPKCGQGKLVIRFGR--NGEFLACSRYNR 623
Score = 47.8 bits (112), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 967 CPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
CP CGEG L+ + +FG ++ GC+++P+C+YI TL
Sbjct: 708 CPKCGEGELLRRRGKFGRPFY-GCSRYPKCDYITNTL 743
>gi|337754462|ref|YP_004646973.1| DNA topoisomerase I [Francisella sp. TX077308]
gi|336446067|gb|AEI35373.1| DNA topoisomerase I [Francisella sp. TX077308]
Length = 765
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 265/708 (37%), Positives = 407/708 (57%), Gaps = 56/708 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES K K I+ YLG+ +++L S+GHVR++ ++ S+ +D+F + + +
Sbjct: 2 AKNLVIVESPAKTKTIKKYLGNNFDILASFGHVREIPSKDTSIDVNDNFKIKFTTSEKSK 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
HL +IK + AEN+ LA+DPDREGEAI+WH+ E+L+ L + V RV F+EIT++
Sbjct: 62 KHLDAIKKSAKNAENIYLATDPDREGEAISWHVQEVLKNARLLKDK-NVYRVTFNEITKS 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A++ +E+ +LV A AR+ALD+L+GFN+SPLLWRK+ SAGRVQS AL +I
Sbjct: 121 AVTNAIENPKELSMDLVNAQKARQALDFLVGFNLSPLLWRKITSGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE+E + F ++YW++ A + K++ A+LT F ++ Q + + +A++
Sbjct: 181 EREIERENFVKKDYWSLTADIFKQKQ-------IFANLTEFDGTKVEQFTFTAEKDAENA 233
Query: 589 EQKI--NSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
+ I ++ F +++ R+NP P+ITSTLQQ+A+ KL F+A TM AQKLYEG
Sbjct: 234 KATITKDANGFLIVEGITEKKTRRNPYPPFITSTLQQEASKKLGFTAKRTMSTAQKLYEG 293
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
+ L +G + GLI+YMRTD ++S++A +IRS I ++ P + PR + KK +NAQE
Sbjct: 294 MDLGNGESVGLISYMRTDSTNLSNDALNDIRSFIESKFDKDMLPSK-PRVFGKKSQNAQE 352
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEAIR T + P + L D KLYSLI++RT+ACQM+ AT+ VD+ +E
Sbjct: 353 AHEAIRVTSASKTPESMKPYLTTDEFKLYSLIYNRTIACQMKHATLNSTSVDLITENEKH 412
Query: 766 VFRSSCSRVEFLGFQAAY---EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
FR + + + GF Y +D D E E ND L + G+ + L ++
Sbjct: 413 KFRVTGTVIVDAGFLKIYNVEKDED-------EKESNDEQ----TLPKFEKGEKVPLKDI 461
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
K H T+PP RY+E SLVK LE+ GIGRPSTYA+ + LQ R+Y V+ R P +GR
Sbjct: 462 ITKAHSTEPPPRYTEASLVKALEKYGIGRPSTYATIISTLQQRDYAEVEKRRFIPTDKGR 521
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ FL+ YF + +YS+TA +E ELD ++ ++ +L +W F I
Sbjct: 522 VVNKFLTEYFKKYVEYSYTAGLEKELDEIAHHKNDYLTVLNSFWKPF-----------IE 570
Query: 943 QVEKMLEK-TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIA 1000
++ K+ E + D + L D CP CG SR G G FIGC +P C Y
Sbjct: 571 RINKIAEDVSRKDVVQEEL---DEDCPECGSKL----SSRLGKNGRFIGCTNYPTCKYTR 623
Query: 1001 KTLYGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
+ D+ + +EP ++ P + +K G YG ++
Sbjct: 624 RV--------DSDGKEIEKEEPTVVEDRKCPECGSNLHIKQGRYGKFI 663
>gi|386083718|ref|YP_006000000.1| DNA topoisomerase I [Xylella fastidiosa subsp. fastidiosa GB514]
gi|307578665|gb|ADN62634.1| DNA topoisomerase I [Xylella fastidiosa subsp. fastidiosa GB514]
Length = 800
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 252/583 (43%), Positives = 356/583 (61%), Gaps = 19/583 (3%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V P++ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPENGFAMRYDLIDKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A A+++ LA+DPDREGEAI+WHI E+L+++ L + + R+VF EIT +
Sbjct: 63 HVEAITKAAKTADSIYLATDPDREGEAISWHISEILKERGLLKDK-PMQRIVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+Q R I ++LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAIQKPRMIASDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F +EYW++ A H F A L K+ Q +I A +
Sbjct: 182 REEEIEAFITREYWSIHAECTHPAQH------FSAKLIKLDGKKFEQFTITDSDTAAAAQ 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
++I A + + + R+ P+ITSTLQQ+A+ KL F+ TM++AQKLYEG+
Sbjct: 236 RRIQQAAQGRLHITDVTNKERKRRPAPPFITSTLQQEASRKLGFTTRKTMQIAQKLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L + + GLITYMRTD +++S +A EIR +I YG++ P++ P Y K KNAQEA
Sbjct: 296 ALGEEGSVGLITYMRTDSVNLSLDALSEIRDIIARDYGTNALPDK-PNVYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R P ++ L + +LY L+W RT+A QM PA + VD+ +E V
Sbjct: 355 HEAVRPTSALRTPTQVAPYLSNEEHRLYELVWKRTVASQMIPAILNTTSVDLAAGNEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ + V GF A YE+ K+N+ + + L +KTG+ + L + +Q
Sbjct: 414 FRATGTTVVVQGFLAVYEE-------GKDNKNAEDDDEGRKLPVMKTGENVPLERILTEQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RY+E +LVK LEE GIGRPSTYAS ++ L R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRYTEAALVKALEEYGIGRPSTYASIIQTLLFRKYVDMEGRSFRPTDIGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF 929
FLS +F++ DY FTA +E ELD +S G EW L+ +W F
Sbjct: 527 FLSSHFTQYVDYDFTAHLEDELDAISRGEEEWIPLMKKFWVPF 569
Score = 47.4 bits (111), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 3/132 (2%)
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK 1066
+D++D+L + T+ +L+G P S ++V + G +G VQ+G P+ AS+ +
Sbjct: 574 EDKKDSLDK-TDAGSVRLLGIDPTSGKEVSARIGRFGPMVQIGTVDDEEKPRFASLRPNQ 632
Query: 1067 DVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
+ SI+LE+A+EL + P LG Q + + + R G + T S+ P +
Sbjct: 633 SIYSISLEEAIELFKMPRVLGED--QSQQVSVGIGRFGPFAKRGSTYVSLKSEDDPYTID 690
Query: 1127 LEKALEFLSGKD 1138
L +A ++ K+
Sbjct: 691 LARATLLINEKE 702
>gi|71276453|ref|ZP_00652729.1| DNA topoisomerase I [Xylella fastidiosa Dixon]
gi|170731005|ref|YP_001776438.1| DNA topoisomerase I [Xylella fastidiosa M12]
gi|71162769|gb|EAO12495.1| DNA topoisomerase I [Xylella fastidiosa Dixon]
gi|71728965|gb|EAO31097.1| DNA topoisomerase I [Xylella fastidiosa Ann-1]
gi|167965798|gb|ACA12808.1| DNA topoisomerase [Xylella fastidiosa M12]
Length = 815
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 251/583 (43%), Positives = 356/583 (61%), Gaps = 19/583 (3%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V P++ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPENGFAMRYDLIDKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A A+++ LA+DPDREGEAI+WHI E+L+++ L + + R+VF EIT +
Sbjct: 63 HVEAITKAAKTADSIYLATDPDREGEAISWHISEILKERGLLKDK-PMQRIVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+Q R I ++LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAIQKPRMIASDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F +EYW++ A H F A L K+ Q +I A +
Sbjct: 182 REEEIEAFITREYWSIHAECTHPAQH------FSAKLIKLDGKKFEQFTITDSDTAAAAQ 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
++I A ++ + + R+ P+ITSTLQQ+A+ KL F+ TM++AQKLYEG+
Sbjct: 236 RRIQQAAQGRLRITDVTNKERKRRPAPPFITSTLQQEASRKLGFTTRKTMQIAQKLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L + + GLITYMRTD +++S +A EIR +I YG++ P++ P Y K KNAQEA
Sbjct: 296 ALGEEGSVGLITYMRTDSVNLSLDALSEIRDIIARDYGTNALPDK-PNVYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R P ++ L + +LY L+W R +A QM PA + VD+ +E V
Sbjct: 355 HEAVRPTSALRTPTQVAPYLSNEEHRLYELVWKRAVASQMIPAILNTTSVDLTAGNEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ + V GF A YE+ K+N+ + + L +KTG+ + L + +Q
Sbjct: 414 FRATGTTVVVQGFLAVYEE-------GKDNKNAEDDDEGRKLPVMKTGENVPLERILTEQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RY+E +LVK LEE GIGRPSTYAS ++ L R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRYTEAALVKALEEYGIGRPSTYASIIQTLLFRKYVDMEGRSFRPTDIGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF 929
FLS +F++ DY FTA +E ELD +S G EW L+ +W F
Sbjct: 527 FLSSHFTQYVDYDFTAHLEDELDAISRGEEEWIPLMKKFWVPF 569
Score = 44.3 bits (103), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 1009 EEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDV 1068
++D+L + T+ +L+G P S ++V + G +G VQ+G P+ AS+ + +
Sbjct: 576 KKDSLDK-TDAGSVRLLGIDPTSGKEVSARIGRFGPMVQIGTVDDEEKPRFASLRPNQSI 634
Query: 1069 DSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
SI+LE+A+EL + P LG Q + + + R G + T S+ P + L
Sbjct: 635 YSISLEEAIELFKMPRVLGED--QSQQVSVGIGRFGPFAKRGSTYVSLKSEDDPYTIDLA 692
Query: 1129 KALEFLSGKD 1138
+A ++ K+
Sbjct: 693 RATFLINEKE 702
>gi|118578967|ref|YP_900217.1| DNA topoisomerase I [Pelobacter propionicus DSM 2379]
gi|118501677|gb|ABK98159.1| DNA topoisomerase I [Pelobacter propionicus DSM 2379]
Length = 776
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 288/713 (40%), Positives = 398/713 (55%), Gaps = 52/713 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
+++V+VES KAK I+ +LG Y+VL S+GHVR L ++ GSV + DF+ + + +
Sbjct: 3 QNLVIVESPAKAKTIEKFLGKDYKVLASFGHVRALPSKQGSVDIEQDFTPKYHILPESKK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ +IK AL A+NL+LA+DPDREGEAI+WH++ L D + ++ RVVFHEIT+ +
Sbjct: 63 HIDAIKAALKDAKNLLLATDPDREGEAISWHLLAALGL-DKKNPGKSIQRVVFHEITKDA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I A++ R+I +LV A AR LDYL+GFN+SP LW+K+ SAGRVQS AL L+C+
Sbjct: 122 IIHAVENPRDIATDLVDAQQARSVLDYLVGFNLSPFLWKKIRYGLSAGRVQSVALRLVCE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI FK QEYWT+ A L K F A L K+L + I A +
Sbjct: 182 REKEIQAFKEQEYWTIAARLGVKPGAE-----FRASLVEVGGKKLGKFDIPDENVATALN 236
Query: 590 QKINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ + S +++V K + R+ ++NP+P + TSTLQQ+A+ KL FSA TM AQKLYEG+ +
Sbjct: 237 RALKSGSYRVAKIT-RTERKRNPSPPFTTSTLQQEASRKLGFSAKKTMSTAQKLYEGIDI 295
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
GLITYMRTD + +S +A E +I YG+ +A + PR + K KNAQEAHE
Sbjct: 296 GQEGTVGLITYMRTDSVTLSSQALTEAHEVISAAYGAEYALAK-PRIFKTKTKNAQEAHE 354
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
A+RPT I R PA L L D KLY LIW RT+A QM A + Q VDI V
Sbjct: 355 AVRPTSIARTPAELKKHLTPDLFKLYELIWKRTVASQMAEALLDQTSVDIAAELNEAV-- 412
Query: 769 SSCSRVE------FLGFQAAYEDVDAGAIR-------YKENEENDRHEAFAILNSLKTGD 815
+ C+ E F G + IR Y E ++ E +L L+ GD
Sbjct: 413 ADCTVAESGAASPFTGAKRCGLRAAGTVIRFPGFMKLYIEGLDDQDEEKEGLLPPLQEGD 472
Query: 816 PLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRIL 875
L L E+ +QH TQPP RY+E +LVK LEE GIGRPSTYAS + L +R Y + +
Sbjct: 473 DLKLHELFPEQHFTQPPPRYTEATLVKTLEEYGIGRPSTYASIMNTLVERKYTRLDKKRF 532
Query: 876 YPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTC 935
+PE G +V+ L +FS DY+FTA +E ELD VS G +WK LL ++W F +
Sbjct: 533 FPEDVGMVVNDLLVAHFSRYVDYNFTAGLEEELDQVSRGEKQWKPLLKEFWEPFITL--- 589
Query: 936 AQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPR 995
+ Q E ++K D L + D CP CG+ L K+ + G FI C
Sbjct: 590 -----LKQKEGEVKK---DDLTTT--ELDEVCPECGK-PLAIKLGK--RGKFIACTGFKE 636
Query: 996 -CNYIAKTLYGDDDE-EDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYV 1046
C Y + L D E + + + D+ +++L+K G YG Y+
Sbjct: 637 GCTY-TRNLESDASEPSEPVLSDEKCDK---------CGQQMLIKDGRYGKYL 679
>gi|310641536|ref|YP_003946294.1| DNA topoisomerase i [Paenibacillus polymyxa SC2]
gi|386040566|ref|YP_005959520.1| DNA topoisomerase I [Paenibacillus polymyxa M1]
gi|309246486|gb|ADO56053.1| DNA topoisomerase I [Paenibacillus polymyxa SC2]
gi|343096604|emb|CCC84813.1| DNA topoisomerase I [Paenibacillus polymyxa M1]
Length = 700
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 270/678 (39%), Positives = 381/678 (56%), Gaps = 57/678 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES +KAK I YLG Y V S GH+RDL V ++DF+ + +
Sbjct: 4 SLVIVESPSKAKTIGKYLGSKYIVKASMGHIRDLPKSQIGVEVENDFNPKYITIRGKGSI 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A + + LA+DPDREGEAIAWH+ L+ D RVVF+EIT+ ++
Sbjct: 64 LKELKDARKKVKKVYLAADPDREGEAIAWHLAHALELDDTAD-----CRVVFNEITKQAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+I+ +LV A ARR LD L+G+ ISPLLW+K+ SAGRVQS A+ +I DR
Sbjct: 119 KDAFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIILDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+EF P+EYWT+ A L K+S TF H H + K L+ S + +++ +
Sbjct: 179 ENEINEFVPEEYWTITAKLAIKDS----TFEAKFHKLHGEKKELS-----SEADVQEVLE 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I ++++V ++ +R P+ TS+LQQ+AA KLNF A+ TM +AQ+LYEGV L
Sbjct: 230 AIGKSSYKVRDVKEKERLRNPSPPFTTSSLQQEAARKLNFRASKTMSVAQQLYEGVDLGK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD I+ A +E + +I ++YG PE PR+Y KK NAQ+AHEAI
Sbjct: 290 EGTVGLITYMRTDSTRIATSAQEEAKEVIVQKYGEDFVPE-SPRQYSKKSANAQDAHEAI 348
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + + D +LY LIW R MA QM A + + VDI A E+I FR++
Sbjct: 349 RPTSALRDPETVKPFMSRDQFRLYKLIWERFMASQMASAIMDTLSVDI-EAGEAI-FRAA 406
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+V F GF Y E ++ + E +L L+ GD L VE KQH TQ
Sbjct: 407 GSKVRFPGFMKVY----------VEGNDDGKTEEDKLLPPLQPGDKLKKESVEPKQHFTQ 456
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEELGIGRPSTYA TL+ +Q R YV ++ + +P G +V +
Sbjct: 457 PPPRYTEARLVKTLEELGIGRPSTYAPTLETIQKRGYVAIEEKKFFPTELGELVIEQMEE 516
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSS------------------- 931
+F E+ + FTA+ME +LD+V G +W +L D++ F
Sbjct: 517 FFPEILNVEFTANMEGDLDHVEEGEGDWVKVLSDFYESFEKRLEVAEEEMKEIEIKDEVS 576
Query: 932 --YCTCAQSLHIHQVEKMLEKTFGDSLFASLPN-----KD--RSCPVCGEGTLIFKVSRF 982
C S ++++ + K S F N KD +CP CGEG ++ + S+
Sbjct: 577 DVICDKCGSPMVYKLGR-FGKFLACSAFPDCRNTKPIVKDIGMNCPTCGEGHVVERRSKK 635
Query: 983 GAGYFIGCNQHPRCNYIA 1000
G F GC+++P C++++
Sbjct: 636 GR-VFYGCDRYPECDFVS 652
>gi|148655573|ref|YP_001275778.1| DNA topoisomerase I [Roseiflexus sp. RS-1]
gi|148567683|gb|ABQ89828.1| DNA topoisomerase I [Roseiflexus sp. RS-1]
Length = 789
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 273/661 (41%), Positives = 380/661 (57%), Gaps = 45/661 (6%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KA+ IQ YLG Y V S GHVRDL V D +F+ V+EV
Sbjct: 2 GEKLVIVESPAKARTIQKYLGQGYRVEASMGHVRDLPKSDLGVDLDANFTPVYEVSPGKE 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+ +++ ++ A+ + LA+DPDREGEAIAWHI E + + V RVVF EIT
Sbjct: 62 KIIAALRKSIRQADAVYLATDPDREGEAIAWHITEAAK----IPRGKPVYRVVFTEITPG 117
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+++ A+ + R+ID LV A ARR LD L+G+ +SPLLW K+ SAGRVQS A+ LI
Sbjct: 118 AVRSAMASPRDIDRRLVDAQQARRVLDRLVGYKLSPLLWEKVRRGLSAGRVQSVAVRLIV 177
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI+ F PQEYWT+EA L K+E+ F A L ++L + IGS +A+ I
Sbjct: 178 EREREIEAFVPQEYWTIEADLLKQEARD----PFRAVLIERAGRKLEKFDIGSGEQAQAI 233
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ A + V K ++R R P P+ TSTLQQ+A KL FSA TM +AQ+LYEGV +
Sbjct: 234 IVDLEGAAYIVRKVTRRDKRRSPPPPFTTSTLQQEAGRKLGFSAKRTMAVAQQLYEGVDI 293
Query: 649 P-DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
D GLITYMRTD +++S EA +E R +I +RYG + P + P Y K K AQEAH
Sbjct: 294 GGDEGLVGLITYMRTDSVNVSREAQEEARIVIRDRYGEAYLPPKPP-VYKTKTKGAQEAH 352
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNA------ 761
EAIRPT RR P + L D +LY LIW R +A QM+ A VDIG
Sbjct: 353 EAIRPTLSRRTPEQVQPYLTSDQYRLYELIWKRFVASQMEAAVFDSTTVDIGAGRGIERS 412
Query: 762 --DESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYL 819
++ FR++ S ++F GF A Y + +E+E+++R L L GD L L
Sbjct: 413 AGNDPYTFRTTGSVLKFPGFLAVY---NVSLDEGEEDEDSERR-----LPLLAEGDVLAL 464
Query: 820 GEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEF 879
++ QH T+PP R++E SLVK+LE LGIGRPSTYA T+ + +R YV + + L P
Sbjct: 465 VQLLPVQHFTEPPPRFTEASLVKELERLGIGRPSTYAPTISTIIEREYVELADKKLVPTT 524
Query: 880 RGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQ-S 938
GR+V+ L +F + DY FT++ME +LD+++ G EW +L ++ F AQ S
Sbjct: 525 LGRVVTDLLVQHFPSIVDYGFTSEMEQQLDDIAEGEKEWTPVLRSFYEPFEQKLADAQRS 584
Query: 939 LHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCN 997
+ + E++L D +CP C +G L RFG G F+ CN++P C+
Sbjct: 585 MRNVKREEIL--------------TDLTCPKCSQGQLAI---RFGKNGEFLACNRYPECD 627
Query: 998 Y 998
+
Sbjct: 628 F 628
>gi|308068645|ref|YP_003870250.1| DNA topoisomerase I [Paenibacillus polymyxa E681]
gi|305857924|gb|ADM69712.1| DNA topoisomerase I [Paenibacillus polymyxa E681]
Length = 700
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 273/677 (40%), Positives = 382/677 (56%), Gaps = 55/677 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES +KAK I YLG Y V S GH+RDL V ++DF+ + +
Sbjct: 4 SLVIVESPSKAKTIGKYLGSKYIVKASMGHIRDLPKSQIGVEVENDFNPKYITIRGKGSI 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A + + LA+DPDREGEAIAWH+ L+ D RVVF+EIT+ ++
Sbjct: 64 LKELKDARKKVKKVYLAADPDREGEAIAWHLAHALELDDTAD-----CRVVFNEITKQAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+I+ +LV A ARR LD L+G+ ISPLLW+K+ SAGRVQS A+ +I DR
Sbjct: 119 KDAFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIILDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI EF P+EYWT+ A L K+S TF H + K L+ S T+ +++ +
Sbjct: 179 ENEISEFVPEEYWTITAKLAIKDS----TFEAKFHKLRGEKKELS-----SETDVQEVLE 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I ++++V ++ +R P+ TS+LQQ+AA KLNF A+ TM +AQ+LYEGV L
Sbjct: 230 AIGKSSYKVRDVKEKERLRNPSPPFTTSSLQQEAARKLNFRASKTMSVAQQLYEGVDLGK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD I+ A +E + LI ++YG PE PR+Y KK NAQ+AHEAI
Sbjct: 290 EGTVGLITYMRTDSTRIAASAQEEAKELIIQKYGEAFVPE-TPRQYSKKAANAQDAHEAI 348
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + + D +LY L+W R MA QM A + + VDI A E+I FR++
Sbjct: 349 RPTSALRDPETVKPFMSRDQFRLYKLVWERFMASQMASAIMDTLSVDI-EAGETI-FRAA 406
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+V F GF Y E ++ + E +L L+ GD L VE KQH TQ
Sbjct: 407 GSKVRFPGFMKVY----------VEGNDDGKTEEDKLLPPLQPGDKLKKEAVEPKQHFTQ 456
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEELGIGRPSTYA TL+ +Q R YV ++ + +P G +V +
Sbjct: 457 PPPRYTEARLVKTLEELGIGRPSTYAPTLETIQKRGYVAIEEKKFFPTELGELVIEQMEE 516
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSL--------HIH 942
+F E+ + FTA+ME +LD+V G W +L D++ F A+ +
Sbjct: 517 FFPEILNVEFTANMEGDLDHVEEGEGNWVKVLSDFYESFEKRLEVAEEEMKEIEIKDEVS 576
Query: 943 QV------EKMLEKT--FGDSLFAS-LPN--------KD--RSCPVCGEGTLIFKVSRFG 983
V +M+ K FG L S P+ KD +CP CGEG ++ + S+ G
Sbjct: 577 DVICDKCGSQMVYKLGRFGKFLACSAFPDCRNTKPIVKDIGINCPTCGEGHVVERRSKKG 636
Query: 984 AGYFIGCNQHPRCNYIA 1000
F GC+++P C++++
Sbjct: 637 R-IFYGCDRYPECDFVS 652
>gi|254875734|ref|ZP_05248444.1| DNA topoisomerase I [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|254841755|gb|EET20169.1| DNA topoisomerase I [Francisella philomiragia subsp. philomiragia
ATCC 25015]
Length = 765
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 264/708 (37%), Positives = 403/708 (56%), Gaps = 56/708 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES K K I+ YLG+ +++L S+GHVR++ ++ S+ +D+F + + +
Sbjct: 2 AKNLVIVESPAKTKTIKKYLGNDFDILASFGHVREIPSKDTSIDVNDNFKIKFTTSERSK 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
HL +IK A AEN+ LA+DPDREGEAI+WH+ E+L+ L + V RV F+EIT++
Sbjct: 62 KHLDAIKKAAKSAENIYLATDPDREGEAISWHVQEILKNAHLLKDK-NVYRVTFNEITKS 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A++ +E+ +LV A AR+ALD+L+GFN+SPLLWRK+ SAGRVQS AL +I
Sbjct: 121 AVTNAIENPKELSMDLVNAQKARQALDFLVGFNLSPLLWRKITSGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFS---FPAHLTHFQSKRLNQLSIGSHTEA 585
+RE+E + F Q+YW++ A DTF A+L F + ++ Q + + +A
Sbjct: 181 EREIERENFIKQDYWSLTA----------DTFKQKQIFANLIEFNNTKVEQFTFIAEKDA 230
Query: 586 KDIEQKI--NSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKL 642
K + I ++ F +++ R+NP P+ITSTLQQ+A+ KL F+A TM AQKL
Sbjct: 231 KKAKSTIVKDANGFLIVEEVTEKKTRRNPYPPFITSTLQQEASKKLGFTAKRTMSTAQKL 290
Query: 643 YEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
YEG+ L +G + GLI+YMRTD ++S++A +IR+ I ++ P + PR + KK +N
Sbjct: 291 YEGIDLGNGESVGLISYMRTDSTNLSNDALNDIRNFIESKFDKDMLPSK-PRVFGKKSQN 349
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
AQEAHEAIR T R P + L D KLYSLI++RT+ACQM+ AT+ VD+ +
Sbjct: 350 AQEAHEAIRVTAANRTPESIKQHLTSDEFKLYSLIYNRTIACQMKQATLNSTSVDLITEN 409
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
FR + + + GF Y + ++E+ L + G+ + L ++
Sbjct: 410 SKHKFRVTGTVIIDAGFLKIYNVEKDEDEKDSDDEQT--------LPEFEKGEKVPLKDI 461
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
K H T+PP RY+E SLVK LE+ GIGRPSTYA+ + LQ R+YV V+ R P +GR
Sbjct: 462 ITKAHSTEPPPRYTEASLVKALEKHGIGRPSTYATIISTLQQRDYVEVEKRRFIPTDKGR 521
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ FL+ YF + +YS+TA +E ELD ++ ++ +L +W F I
Sbjct: 522 IVNKFLTEYFKKYVEYSYTAGLEKELDEIANHKNDYLSVLNSFWHPF-----------IE 570
Query: 943 QVEKMLEK-TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIA 1000
++ K+ E + D + L D CP CG SR G G FIGC +P C Y
Sbjct: 571 KINKISEDVSRKDVVTEEL---DEDCPECGSKL----SSRLGKNGRFIGCTNYPTCKYTR 623
Query: 1001 KTLYGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
+ D+ + +EP ++ P + +K G YG ++
Sbjct: 624 RV--------DSDGKEVEKEEPTVVEDRKCPECGSDLHIKQGRYGKFI 663
>gi|95929067|ref|ZP_01311812.1| DNA topoisomerase [Desulfuromonas acetoxidans DSM 684]
gi|95134968|gb|EAT16622.1| DNA topoisomerase [Desulfuromonas acetoxidans DSM 684]
Length = 810
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 275/665 (41%), Positives = 379/665 (56%), Gaps = 37/665 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
+S+V+VES K+K I+ +LG Y+VL SYGH+R L ++ GSV + F + + +
Sbjct: 2 ARSLVIVESPAKSKTIEKFLGKDYKVLASYGHIRALPSKQGSVDVEGGFVPKYHILPESQ 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H++ + ++ E L+LA+D DREGEAIAWH++E L D + V RV FHEIT+
Sbjct: 62 KHIELLTKEVAKCEELLLATDLDREGEAIAWHLLEALGI-DENSDKPKVKRVTFHEITKP 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I A+ I +LV A AR LDYL+GF +SP LW+K+ SAGRVQS AL L+C
Sbjct: 121 AILKAVAEPHHISRDLVNAQQARVILDYLVGFTLSPFLWKKIRYGLSAGRVQSVALRLVC 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI F+ +EYW++EA L S F A L KRL++ I + A+ +
Sbjct: 181 EREKEIQAFESREYWSIEAQLANNSGAS-----FEAKLNAIDGKRLDKFHIENQQAAEQL 235
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
++I++ QV K + + R P+ TSTLQQ+A+ KL FSA TM +AQKLYEG+ +
Sbjct: 236 VKEISALPLQVAKVTSKEKKRSPAAPFTTSTLQQEASRKLGFSARKTMTVAQKLYEGIDI 295
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G A GLITYMRTD + +S++A E R +I YG +A + PR Y + KNAQEAHE
Sbjct: 296 GQG-AVGLITYMRTDSVALSEQATSEARDVITSIYGEQYALTK-PRVYKSRAKNAQEAHE 353
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV-- 766
AIRPT I P + L+ D KLY LIW RT+A QM A + VDI ++
Sbjct: 354 AIRPTSIANHPEKIKAALNSDQYKLYRLIWMRTVASQMAQAILDATTVDITTQGGAVQHN 413
Query: 767 FRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
FR++ + F GF Y E D G E EE D +L L+ + + E+
Sbjct: 414 FRANGQVIRFPGFMKLYIEGTDEG----NEPEEQD-----GMLPPLQEQESVASKEITPN 464
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH TQPP RY+E SLVK LEE GIGRPSTYAS + L R YV ++ R + E G +V+
Sbjct: 465 QHFTQPPPRYTEASLVKILEEYGIGRPSTYASIMNTLVTRKYVRLEKRAFHAEDVGMVVN 524
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
LS++F++ DY FTA+ E ELD VS G +WK LL +YW F + + I + +
Sbjct: 525 DLLSNHFTKYVDYDFTANFEEELDAVSRGEKQWKPLLKEYWEPFVTLLK-QKEQEISKAD 583
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
EKT D+ CP CG+ L+ K+ R +G F+ C+ P C + + L G
Sbjct: 584 LTTEKT------------DKICPECGK-ELVIKLGR--SGKFLACSGFPDCRH-TEPLEG 627
Query: 1006 DDDEE 1010
D EE
Sbjct: 628 GDQEE 632
>gi|374323456|ref|YP_005076585.1| DNA topoisomerase i [Paenibacillus terrae HPL-003]
gi|357202465|gb|AET60362.1| DNA topoisomerase i [Paenibacillus terrae HPL-003]
Length = 700
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 269/678 (39%), Positives = 379/678 (55%), Gaps = 57/678 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES +KAK I YLG Y V S GH+RDL V ++DF+ + +
Sbjct: 4 SLVIVESPSKAKTIGKYLGSKYIVKASMGHIRDLPKSQIGVEVENDFNPKYITIRGKGSI 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A + + LA+DPDREGEAIAWH+ L D RVVF+EIT+ ++
Sbjct: 64 LKELKDARKKVKKVYLAADPDREGEAIAWHLAHALDLDDTAD-----CRVVFNEITKQAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+I+ +LV A ARR LD L+G+ ISPLLW+K+ SAGRVQS A+ +I DR
Sbjct: 119 KDAFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIILDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+EF P+EYWT+ A L K+S TF H + K L+ S + +++ +
Sbjct: 179 ENEINEFVPEEYWTITAKLAIKDS----TFEAKFHQLRGEKKELS-----SEADVQEVLE 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I ++++V ++ +R P+ TS+LQQ+AA KLNF A+ TM +AQ+LYEGV L
Sbjct: 230 AIGKSSYKVRDVKEKERLRNPSPPFTTSSLQQEAARKLNFRASKTMSVAQQLYEGVDLGK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD I+ A +E + I ++YG PE PR+Y KK NAQ+AHEAI
Sbjct: 290 EGTVGLITYMRTDSTRIAVSAQEEAKEFIIQKYGEAFVPE-SPRQYSKKAANAQDAHEAI 348
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + + D +LY L+W R MA QM A + + VDI A E+I FR++
Sbjct: 349 RPTSALRDPETVKPFMSRDQFRLYKLVWERFMASQMASAIMDTLSVDI-EAGETI-FRAA 406
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+V F GF Y E ++ + E +L LK+GD L VE KQH TQ
Sbjct: 407 GSKVRFPGFMKVY----------VEGNDDGKTEEDKLLPPLKSGDKLKKESVEPKQHFTQ 456
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEELGIGRPSTYA TL+ +Q R YV ++ + +P G +V +
Sbjct: 457 PPPRYTEARLVKTLEELGIGRPSTYAPTLETIQKRGYVAIEEKKFFPTELGELVIEQMEE 516
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSS------------------- 931
+F E+ + FTA+ME +LD+V G +W +L D++ F
Sbjct: 517 FFPEILNVEFTANMEGDLDHVEEGEGDWVKVLSDFYESFEKRLEVAEEEMKEIEIKDEES 576
Query: 932 --YCTCAQSLHIHQVEKMLEKTFGDSLFASLPN-----KD--RSCPVCGEGTLIFKVSRF 982
C S ++++ + K S F N KD +CP CGEG ++ + S+
Sbjct: 577 DVICDKCGSPMVYKLGR-FGKFLACSAFPDCRNTKPIVKDIGINCPTCGEGHVVERRSKK 635
Query: 983 GAGYFIGCNQHPRCNYIA 1000
G F GC+++P C++++
Sbjct: 636 GR-IFYGCDRYPECDFVS 652
>gi|365922497|ref|ZP_09446696.1| DNA topoisomerase I [Cardiobacterium valvarum F0432]
gi|364573095|gb|EHM50612.1| DNA topoisomerase I [Cardiobacterium valvarum F0432]
Length = 793
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 303/786 (38%), Positives = 430/786 (54%), Gaps = 66/786 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++++VES KAK + YLG Y V+ SYGHVRDL ++G+V DDF+M +E+
Sbjct: 3 KNLLIVESPAKAKTLHKYLGKDYAVMASYGHVRDLIPKNGAVDIGDDFAMHYEIIERNAR 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+ I A AEN+ LA+DPDREGEAI+WH+ E+L ++ AL + + RV FHEIT+ +
Sbjct: 63 HVNEITKAAKTAENIYLATDPDREGEAISWHLKEILHERGALRDK-NLYRVAFHEITKNA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A+ R ++ +LV A ARRALDYL+GFN+SPLLWRK+ SAGRVQS AL +I +
Sbjct: 122 IQQAVANPRHLEMDLVNAQQARRALDYLVGFNLSPLLWRKVRPGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F +EYW + A L SH+ +FP LT + ++ + S T A D E
Sbjct: 182 REREIEAFNSEEYWDIAAAL----SHAGQ--AFPGKLTVYNGEKTKKFSF---TNAADTE 232
Query: 590 QKINS------ANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLY 643
I++ + V +K+ R P+ TST+QQ AA+KL F A TM++AQ+LY
Sbjct: 233 TAIDALKAAAQGSLLVADINKKDSKRNPAPPFTTSTMQQAAASKLYFGAQKTMRVAQRLY 292
Query: 644 EGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA 703
E G ITYMRTD ++++ EA IR + ++YG+++ P++ PR Y K KNA
Sbjct: 293 E---------EGHITYMRTDSVNLAQEAIAAIRDWVAQQYGANYLPDK-PRHYKTKSKNA 342
Query: 704 QEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADE 763
QEAHEAIRPTD R A L L D KLY LI R +A QM A + I D+ E
Sbjct: 343 QEAHEAIRPTDCGRDGASLG--LSGDEYKLYELIRKRAVASQMASAILENISADLYAGSE 400
Query: 764 SIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVE 823
FR+S S V+F G+ + Y++ + + D + +L +K GD + L ++
Sbjct: 401 KHQFRASGSTVKFPGYMSVYQE--------EREDNKDEDDDNRLLPPMKNGDRIQLHDIT 452
Query: 824 LKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRM 883
QH TQPP RYSE +L+K+LE GIGRPSTYAS + LQ+R YV ++R P G++
Sbjct: 453 GSQHFTQPPPRYSEAALIKELEANGIGRPSTYASIIGTLQEREYVEQENRRFIPTTIGKV 512
Query: 884 VSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQ 943
V+ FL+ +F DY FTA +E +LD VS G +WK LL D+W FS + I +
Sbjct: 513 VNDFLTKHFERYVDYDFTARLEDDLDAVSRGERQWKPLLGDFWGAFSERLD--EKKDISR 570
Query: 944 VEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
E M + G + P G+ + + RFG IG A
Sbjct: 571 EEVMQARELG------------TDPKSGK-PVTARFGRFGPFVQIGSKDDEEKPQFASIP 617
Query: 1004 YGDDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
+ TL+ + + P++IG E ++ G YG Y++ G+ R LPK
Sbjct: 618 PERSMDTITLEEALELFKLPRVIGMSEEDGE-LVANIGRYGPYIRYGK-RYVSLPKD--- 672
Query: 1063 SHIKDVDSITLEDALELLRYPVNLGNHP-----KDGQPIMLRL-ARAGFSVRHRRTIASV 1116
+D ++TLE ALEL+ N K+G I+ L R G V + AS+
Sbjct: 673 ---EDPLTVTLERALELVAAKKEADNQKYIKEIKNGDEILQILNGRFGPYVTNGSINASI 729
Query: 1117 PKNMKP 1122
PK ++P
Sbjct: 730 PKTIEP 735
>gi|89255836|ref|YP_513198.1| DNA topoisomerase I [Francisella tularensis subsp. holarctica LVS]
gi|115314325|ref|YP_763048.1| DNA topoisomerase I [Francisella tularensis subsp. holarctica OSU18]
gi|156501816|ref|YP_001427881.1| DNA topoisomerase I [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|254367199|ref|ZP_04983229.1| DNA topoisomerase I [Francisella tularensis subsp. holarctica 257]
gi|422938305|ref|YP_007011452.1| DNA topoisomerase I [Francisella tularensis subsp. holarctica FSC200]
gi|423050162|ref|YP_007008596.1| DNA topoisomerase I [Francisella tularensis subsp. holarctica F92]
gi|89143667|emb|CAJ78866.1| DNA topoisomerase I [Francisella tularensis subsp. holarctica LVS]
gi|115129224|gb|ABI82411.1| DNA topoisomerase [Francisella tularensis subsp. holarctica OSU18]
gi|134253019|gb|EBA52113.1| DNA topoisomerase I [Francisella tularensis subsp. holarctica 257]
gi|156252419|gb|ABU60925.1| DNA topoisomerase I [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|407293456|gb|AFT92362.1| DNA topoisomerase I [Francisella tularensis subsp. holarctica FSC200]
gi|421950884|gb|AFX70133.1| DNA topoisomerase I [Francisella tularensis subsp. holarctica F92]
Length = 764
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 264/707 (37%), Positives = 402/707 (56%), Gaps = 54/707 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES K K I+ YLG+ +E+L S+GHVR++ ++ S+ +D+F + + +
Sbjct: 2 AKNLVIVESPAKTKTIKKYLGNEFEILASFGHVREIPSKDTSIDVNDNFKIKFTTSEKSK 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
HL +IK A A+N+ LA+DPDREGEAI+WH+ E+L+ L + + RV F+EIT++
Sbjct: 62 KHLDAIKKAAKDAQNIYLATDPDREGEAISWHVQEVLKSARLLKDK-NIYRVTFNEITKS 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ +E+ +LV A AR+ALD+L+GFNISPLLWRK+ SAGRVQS AL +I
Sbjct: 121 AVTNAIANPKELSMDLVDAQKARQALDFLVGFNISPLLWRKITSGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTF---SFPAHLTHFQSKRLNQLSIGSHTEA 585
+RE+E + F Q+YW++ A DTF A+L F + ++ Q + + +A
Sbjct: 181 EREIERENFIKQDYWSLTA----------DTFKQKQIFANLLEFNNNKVEQFTFTTAEDA 230
Query: 586 KDIEQKI--NSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKL 642
++ + I ++ F ++ R+NP P+ITSTLQQ+A+ KL F+A TM AQKL
Sbjct: 231 ENAKAHILKDANGFLIVDGITEKKTRRNPYPPFITSTLQQEASKKLGFTAKRTMSTAQKL 290
Query: 643 YEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
YEG+ L +G + GLI+YMRTD ++S++A +IR+ I +Y P + PR + KK +N
Sbjct: 291 YEGIDLGNGESVGLISYMRTDSTNLSNDALNDIRNFIQAKYDKDMLPAK-PRVFEKKSQN 349
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
AQEAHEAIR T R P + L D KLYSLI++RT+ACQM+ AT+ VD+ +
Sbjct: 350 AQEAHEAIRVTAANRTPESIKQFLTNDEFKLYSLIYNRTIACQMKHATLNSTSVDLITEN 409
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
FR + + + GF Y + ++E+ L + G+ + L +V
Sbjct: 410 TKHRFRVTGTVIVDAGFLKIYNVEKDEDEKDSDDEQT--------LPKFEKGEKIILNDV 461
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
K H T+PP RY+E SLVK LE+ GIGRPSTYA+ + LQ R YV V R P +GR
Sbjct: 462 ITKAHSTEPPPRYTEASLVKALEKYGIGRPSTYATIISTLQQREYVEVDKRRFIPTDKGR 521
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ FL+ YF + +YS+TA +E ELD ++ ++ +L ++W F I
Sbjct: 522 IVNKFLTEYFKKYVEYSYTAGLEKELDEIAHHKNDYLSVLNNFWHPF-----------IE 570
Query: 943 QVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAK 1001
++ K+ E + +D CP CG + R G G FIGC +P C Y
Sbjct: 571 RINKISEDVSRKDVVQEELEED--CPECGSKLSL----RLGKNGRFIGCTNYPTCKY--- 621
Query: 1002 TLYGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
T D D ++ ++ +EP ++ P + +K G YG ++
Sbjct: 622 TRPVDSDPKEVIK-----EEPIVVEDRKCPKCNSDLHIKQGRYGKFI 663
>gi|167626625|ref|YP_001677125.1| DNA topoisomerase I [Francisella philomiragia subsp. philomiragia
ATCC 25017]
gi|167596626|gb|ABZ86624.1| DNA topoisomerase [Francisella philomiragia subsp. philomiragia ATCC
25017]
Length = 765
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 264/708 (37%), Positives = 403/708 (56%), Gaps = 56/708 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES K K I+ YLG+ +++L S+GHVR++ ++ S+ +D+F + + +
Sbjct: 2 AKNLVIVESPAKTKTIKKYLGNDFDILASFGHVREIPSKDTSIDVNDNFKIKFTTSERSK 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
HL +IK A AEN+ LA+DPDREGEAI+WH+ E+L+ L + V RV F+EIT++
Sbjct: 62 KHLDAIKKAAKSAENIYLATDPDREGEAISWHVQEVLKNAHLLKDK-NVYRVTFNEITKS 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A++ +E+ +LV A AR+ALD+L+GFN+SPLLWRK+ SAGRVQS AL +I
Sbjct: 121 AVTNAIENPKELSMDLVNAQKARQALDFLVGFNLSPLLWRKITSGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFS---FPAHLTHFQSKRLNQLSIGSHTEA 585
+RE+E + F Q+YW++ A DTF A+L F + ++ Q + + +A
Sbjct: 181 EREIERENFIKQDYWSLTA----------DTFKQKQIFANLIEFNNTKVEQFTFIAEKDA 230
Query: 586 KDIEQKI--NSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKL 642
K + I ++ F +++ R+NP P+ITSTLQQ+A+ KL F+A TM AQKL
Sbjct: 231 KKAKSTIVKDANGFLIVEGVTEKKTRRNPYPPFITSTLQQEASKKLGFTAKRTMSTAQKL 290
Query: 643 YEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
YEG+ L +G + GLI+YMRTD ++S++A +IR+ I ++ P + PR + KK +N
Sbjct: 291 YEGIDLGNGESVGLISYMRTDSTNLSNDALNDIRNFIESKFDKDMLPSK-PRVFDKKSQN 349
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
AQEAHEAIR T R P + L D KLYSLI++RT+ACQM+ AT+ VD+ +
Sbjct: 350 AQEAHEAIRVTAANRTPESIKQHLTSDEFKLYSLIYNRTIACQMKHATLNSTSVDLITEN 409
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
FR + + + GF Y + ++E+ L + G+ + L ++
Sbjct: 410 TKHKFRVTGTVIVDAGFLKIYNVEKDEDEKDSDDEQT--------LPEFEKGEKVPLKDI 461
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
K H T+PP RY+E SLVK LE+ GIGRPSTYA+ + LQ R+YV V+ R P +GR
Sbjct: 462 ITKAHSTEPPPRYTEASLVKALEKHGIGRPSTYATIISTLQQRDYVEVEKRRFIPTDKGR 521
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ FL+ YF + +YS+TA +E ELD ++ ++ +L +W F I
Sbjct: 522 IVNKFLTEYFKKYVEYSYTAGLEKELDEIANHKNDYLSVLNSFWHPF-----------IE 570
Query: 943 QVEKMLEK-TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIA 1000
++ K+ E + D + L D CP CG SR G G FIGC +P C Y
Sbjct: 571 KINKISEDVSRKDVVTEEL---DEDCPECGSKL----SSRLGKNGRFIGCTNYPTCKYTR 623
Query: 1001 KTLYGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
+ D+ + +EP ++ P + +K G YG ++
Sbjct: 624 RV--------DSDGKEVEKEEPTVVEDRKCPECGSDLHIKQGRYGKFI 663
>gi|56708007|ref|YP_169903.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis SCHU
S4]
gi|110670478|ref|YP_667035.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis FSC198]
gi|254368666|ref|ZP_04984680.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022]
gi|254370490|ref|ZP_04986495.1| hypothetical protein FTBG_00266 [Francisella tularensis subsp.
tularensis FSC033]
gi|254874807|ref|ZP_05247517.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis
MA00-2987]
gi|379717247|ref|YP_005305583.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis TIGB03]
gi|379725851|ref|YP_005318037.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis TI0902]
gi|385794660|ref|YP_005831066.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis
NE061598]
gi|421755542|ref|ZP_16192485.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis
80700075]
gi|56604499|emb|CAG45539.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis SCHU
S4]
gi|110320811|emb|CAL08922.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis FSC198]
gi|151568733|gb|EDN34387.1| hypothetical protein FTBG_00266 [Francisella tularensis subsp.
tularensis FSC033]
gi|157121581|gb|EDO65758.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022]
gi|254840806|gb|EET19242.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282159195|gb|ADA78586.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis
NE061598]
gi|377827300|gb|AFB80548.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis TI0902]
gi|377828924|gb|AFB79003.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis TIGB03]
gi|409087970|gb|EKM88055.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis
80700075]
Length = 764
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 264/707 (37%), Positives = 402/707 (56%), Gaps = 54/707 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES K K I+ YLG+ +E+L S+GHVR++ ++ S+ +D+F + + +
Sbjct: 2 AKNLVIVESPAKTKTIKKYLGNEFEILASFGHVREIPSKDTSIDVNDNFKIKFTTSEKSK 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
HL +IK A A+N+ LA+DPDREGEAI+WH+ E+L+ L + + RV F+EIT++
Sbjct: 62 KHLDAIKKAAKDAQNIYLATDPDREGEAISWHVQEVLKSARLLKDK-NIYRVTFNEITKS 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ +E+ +LV A AR+ALD+L+GFNISPLLWRK+ SAGRVQS AL +I
Sbjct: 121 AVTNAIANPKELSMDLVDAQKARQALDFLVGFNISPLLWRKITSGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTF---SFPAHLTHFQSKRLNQLSIGSHTEA 585
+RE+E + F Q+YW++ A DTF A+L F + ++ Q + + +A
Sbjct: 181 EREIERENFIKQDYWSLTA----------DTFKQKQIFANLLEFNNNKVEQFTFTTAEDA 230
Query: 586 KDIEQKI--NSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKL 642
++ + I ++ F ++ R+NP P+ITSTLQQ+A+ KL F+A TM AQKL
Sbjct: 231 ENAKAHILKDANGFLIVDGITEKKTRRNPYPPFITSTLQQEASKKLGFTAKRTMSTAQKL 290
Query: 643 YEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
YEG+ L +G + GLI+YMRTD ++S++A +IR+ I +Y P + PR + KK +N
Sbjct: 291 YEGIDLGNGESVGLISYMRTDSTNLSNDALNDIRNFIQAKYDKDMLPAK-PRVFEKKSQN 349
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
AQEAHEAIR T R P + L D KLYSLI++RT+ACQM+ AT+ VD+ +
Sbjct: 350 AQEAHEAIRVTAANRTPESIKQFLTNDEFKLYSLIYNRTIACQMKHATLNSTSVDLITEN 409
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
FR + + + GF Y + ++E+ L + G+ + L +V
Sbjct: 410 TKHRFRVTGTVIVDAGFLKIYNVEKDEDEKDSDDEQT--------LPKFEKGEKIILNDV 461
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
K H T+PP RY+E SLVK LE+ GIGRPSTYA+ + LQ R YV V R P +GR
Sbjct: 462 ITKAHSTEPPPRYTEASLVKALEKYGIGRPSTYATIISTLQQREYVEVDKRRFIPTDKGR 521
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ FL+ YF + +YS+TA +E ELD ++ ++ +L ++W F I
Sbjct: 522 IVNKFLTEYFKKYVEYSYTAGLEKELDEIAHHKNDYLSVLNNFWHPF-----------IE 570
Query: 943 QVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAK 1001
++ K+ E + +D CP CG + R G G FIGC +P C Y
Sbjct: 571 RINKISEDVSRKDVVQEELEED--CPECGSKLSL----RLGKNGRFIGCTNYPTCKY--- 621
Query: 1002 TLYGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
T D D ++ ++ +EP ++ P + +K G YG ++
Sbjct: 622 TRPVDSDPKEVIK-----EEPIVVEDRKCPKCNSDLHIKQGRYGKFI 663
>gi|134302203|ref|YP_001122172.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421752033|ref|ZP_16189068.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis AS_713]
gi|421753891|ref|ZP_16190879.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis 831]
gi|421757613|ref|ZP_16194490.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis
80700103]
gi|421759466|ref|ZP_16196298.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis
70102010]
gi|424674788|ref|ZP_18111702.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis
70001275]
gi|134049980|gb|ABO47051.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis
WY96-3418]
gi|409086037|gb|EKM86160.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis AS_713]
gi|409086196|gb|EKM86318.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis 831]
gi|409090847|gb|EKM90855.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis
70102010]
gi|409092232|gb|EKM92209.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis
80700103]
gi|417434462|gb|EKT89412.1| DNA topoisomerase I [Francisella tularensis subsp. tularensis
70001275]
Length = 764
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 264/707 (37%), Positives = 402/707 (56%), Gaps = 54/707 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES K K I+ YLG+ +E+L S+GHVR++ ++ S+ +D+F + + +
Sbjct: 2 AKNLVIVESPAKTKTIKKYLGNEFEILASFGHVREIPSKDTSIDVNDNFKIKFTTSEKSK 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
HL +IK A A+N+ LA+DPDREGEAI+WH+ E+L+ L + + RV F+EIT++
Sbjct: 62 KHLDAIKKAAKDAQNIYLATDPDREGEAISWHVQEVLKSARLLKDK-NIYRVTFNEITKS 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ +E+ +LV A AR+ALD+L+GFNISPLLWRK+ SAGRVQS AL +I
Sbjct: 121 AVTNAIANPKELSMDLVDAQKARQALDFLVGFNISPLLWRKITSGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTF---SFPAHLTHFQSKRLNQLSIGSHTEA 585
+RE+E + F Q+YW++ A DTF A+L F + ++ Q + + +A
Sbjct: 181 EREIERENFIKQDYWSLTA----------DTFKQKQIFANLLEFNNNKVEQFTFTTAEDA 230
Query: 586 KDIEQKI--NSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKL 642
++ + I ++ F ++ R+NP P+ITSTLQQ+A+ KL F+A TM AQKL
Sbjct: 231 ENAKAHILKDANGFLIVDGITEKKTRRNPYPPFITSTLQQEASKKLGFTAKRTMSTAQKL 290
Query: 643 YEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
YEG+ L +G + GLI+YMRTD ++S++A +IR+ I +Y P + PR + KK +N
Sbjct: 291 YEGIDLGNGESVGLISYMRTDSTNLSNDALNDIRNFIQAKYDKDMLPAK-PRVFEKKSQN 349
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
AQEAHEAIR T R P + L D KLYSLI++RT+ACQM+ AT+ VD+ +
Sbjct: 350 AQEAHEAIRVTAANRTPESIKQFLTNDEFKLYSLIYNRTIACQMKHATLNSTSVDLITEN 409
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
FR + + + GF Y + ++E+ L + G+ + L +V
Sbjct: 410 TKHRFRVTGTVIVDAGFLKIYNVEKDEDEKDSDDEQT--------LPKFEKGEKIILNDV 461
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
K H T+PP RY+E SLVK LE+ GIGRPSTYA+ + LQ R YV V R P +GR
Sbjct: 462 ITKAHSTEPPPRYTEASLVKALEKYGIGRPSTYATIISTLQQREYVEVDKRRFIPTDKGR 521
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ FL+ YF + +YS+TA +E ELD ++ ++ +L ++W F I
Sbjct: 522 IVNKFLTEYFKKYVEYSYTAGLEKELDEIAHHKNDYLSVLNNFWHPF-----------IE 570
Query: 943 QVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAK 1001
++ K+ E + +D CP CG + R G G FIGC +P C Y
Sbjct: 571 RINKISEDVSRKDVVQEELEED--CPECGSKLSL----RLGKNGRFIGCTNYPTCKY--- 621
Query: 1002 TLYGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
T D D ++ ++ +EP ++ P + +K G YG ++
Sbjct: 622 TRPVDSDPKEVIK-----EEPIVVEDRKCPKCNSDLHIKQGRYGKFI 663
>gi|387823979|ref|YP_005823450.1| DNA topoisomerase I [Francisella cf. novicida 3523]
gi|328675578|gb|AEB28253.1| DNA topoisomerase I [Francisella cf. novicida 3523]
Length = 764
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 266/708 (37%), Positives = 404/708 (57%), Gaps = 56/708 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES K K I+ YLG+ +E+L S+GHVR++ ++ S+ +D+F + + +
Sbjct: 2 AKNLVIVESPAKTKTIKKYLGNEFEILASFGHVREIPSKDTSIDVNDNFKIKFTTSEKSK 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
HL +IK A A+N+ LA+DPDREGEAI+WH+ E+L+ L + V RV F+EIT++
Sbjct: 62 KHLDAIKKAAKDAQNIYLATDPDREGEAISWHVQEVLKSARLLKDK-NVYRVTFNEITKS 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A++ +E+ +LV A AR+ALD+L+GFN+SPLLWRK+ SAGRVQS AL +I
Sbjct: 121 AVTNAIENPKELSMDLVDAQKARQALDFLVGFNLSPLLWRKITSGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTF---SFPAHLTHFQSKRLNQLSIGSHTEA 585
+RE+E + F Q+YW++ A DTF A+L F + ++ Q + + +A
Sbjct: 181 EREIERENFIKQDYWSLTA----------DTFKQKQIFANLIEFNNNKVEQFTFTTAEDA 230
Query: 586 KDIEQKI--NSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKL 642
++ + I ++ F ++ R+NP P+ITSTLQQ+A+ KL F+A TM AQKL
Sbjct: 231 ENAKVDILKDANGFLIVDGITEKKTRRNPYPPFITSTLQQEASKKLGFTAKRTMSTAQKL 290
Query: 643 YEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
YEG+ L +G + GLI+YMRTD ++S++A +IR+ I +Y P + PR + KK +N
Sbjct: 291 YEGIDLGNGESVGLISYMRTDSTNLSNDALNDIRNFIQAKYDKDMLPAK-PRVFEKKSQN 349
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
AQEAHEAIR T R P + L D KLYSLI++RT+ACQM+ AT+ VD+ +
Sbjct: 350 AQEAHEAIRVTAANRTPESIKQFLTSDEFKLYSLIYNRTIACQMKHATLNSTSVDLITEN 409
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
FR + + + GF Y + ++E+ L + G+ + L +V
Sbjct: 410 TKHKFRVTGTVIVDAGFLKIYNVEKDEDDKDSDDEQT--------LPKFEKGERITLNDV 461
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
K H T+PP RY+E SLVK LE+ GIGRPSTYA+ + LQ R YV V R P +GR
Sbjct: 462 ITKAHSTEPPPRYTEASLVKALEKYGIGRPSTYATIISTLQQREYVEVDKRRFIPTDKGR 521
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ FL+ YF + +YS+TA +E ELD ++ ++ +L ++W F I
Sbjct: 522 IVNKFLTEYFKKYVEYSYTAGLEKELDEIAHHKNDYLSVLNNFWHPF-----------IE 570
Query: 943 QVEKMLEK-TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIA 1000
++ K+ E + D + L D CP CG + R G G FIGC +P C Y
Sbjct: 571 RINKISEDVSRKDVVQEEL---DEDCPECGSKLSL----RLGKNGRFIGCTNYPTCKY-- 621
Query: 1001 KTLYGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
T D D ++ + +EP ++ P + +K G YG ++
Sbjct: 622 -TRPVDSDPKEVAK-----EEPVVVEDRKCPKCSSDLHIKQGRYGKFI 663
>gi|254372399|ref|ZP_04987889.1| DNA topoisomerase I [Francisella tularensis subsp. novicida
GA99-3549]
gi|151570127|gb|EDN35781.1| DNA topoisomerase I [Francisella novicida GA99-3549]
Length = 764
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 263/707 (37%), Positives = 402/707 (56%), Gaps = 54/707 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES K K I+ YLG+ +E+L S+GHVR++ ++ S+ +D+F + + +
Sbjct: 2 AKNLVIVESPAKTKTIKKYLGNEFEILASFGHVREIPSKDTSIDVNDNFKIKFTTSEKSK 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
HL +IK A A+N+ LA+DPDREGEAI+WH+ E+L+ L + + RV F+EIT++
Sbjct: 62 KHLDAIKKAAKDAQNIYLATDPDREGEAISWHVQEVLKSARLLKDK-NIYRVTFNEITKS 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ +E+ +LV A AR+ALD+L+GFN+SPLLWRK+ SAGRVQS AL +I
Sbjct: 121 AVTNAIANPKELSMDLVDAQKARQALDFLVGFNLSPLLWRKITSGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTF---SFPAHLTHFQSKRLNQLSIGSHTEA 585
+RE+E + F Q+YW++ A DTF A+L F + ++ Q + + +A
Sbjct: 181 EREIERENFVKQDYWSLTA----------DTFKQKQIFANLLEFNNNKVEQFTFTTAEDA 230
Query: 586 KDIEQKI--NSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKL 642
++ + I ++ F ++ R+NP P+ITSTLQQ+A+ KL F+A TM AQKL
Sbjct: 231 ENAKAHILKDANGFLIVDGITEKKTRRNPYPPFITSTLQQEASKKLGFTAKRTMSTAQKL 290
Query: 643 YEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
YEG+ L +G + GLI+YMRTD ++S++A +IR+ I +Y P + PR + KK +N
Sbjct: 291 YEGIDLGNGESVGLISYMRTDSTNLSNDALNDIRNFIQAKYDKDMLPAK-PRVFEKKSQN 349
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
AQEAHEAIR T R P + L D KLYSLI++RT+ACQM+ AT+ VD+ +
Sbjct: 350 AQEAHEAIRVTAANRTPESIKQFLTNDEFKLYSLIYNRTIACQMKHATLNSTSVDLITEN 409
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
FR + + + GF Y + ++E+ L + G+ + L +V
Sbjct: 410 TKHKFRVTGTVIVDAGFLKIYNVEKDEDEKDSDDEQT--------LPKFEKGEKIILNDV 461
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
K H T+PP RY+E SLVK LE+ GIGRPSTYA+ + LQ R YV V R P +GR
Sbjct: 462 ITKAHSTEPPPRYTEASLVKALEKYGIGRPSTYATIISTLQQREYVEVDKRRFIPTDKGR 521
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ FL+ YF + +YS+TA +E ELD ++ ++ +L ++W F I
Sbjct: 522 IVNKFLTEYFKKYVEYSYTAGLEKELDEIAHHKNDYLSVLNNFWHPF-----------IE 570
Query: 943 QVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAK 1001
++ K+ E + +D CP CG + R G G FIGC +P C Y
Sbjct: 571 RINKISEDVSRKDVVQEELEED--CPECGSKLSL----RLGKNGRFIGCTNYPTCKY--- 621
Query: 1002 TLYGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
T D D ++ ++ +EP ++ P + +K G YG ++
Sbjct: 622 TRPVDSDPKEVIK-----EEPIVVEDRKCPKCNSDLHIKQGRYGKFI 663
>gi|375308214|ref|ZP_09773500.1| DNA topoisomerase i [Paenibacillus sp. Aloe-11]
gi|375079638|gb|EHS57860.1| DNA topoisomerase i [Paenibacillus sp. Aloe-11]
Length = 700
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 268/678 (39%), Positives = 378/678 (55%), Gaps = 57/678 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES +KAK I YLG Y V S GH+RDL V ++DF+ + +
Sbjct: 4 SLVIVESPSKAKTIGKYLGSKYIVKASMGHIRDLPKSQIGVEVENDFNPKYITIRGKGSI 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A + + LA+DPDREGEAIAWH+ L+ D RVVF+EIT+ ++
Sbjct: 64 LKELKDARKKVKKVYLAADPDREGEAIAWHLAHALELDDTAD-----CRVVFNEITKQAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+I+ +LV A ARR LD L+G+ ISPLLW+K+ SAGRVQS A+ +I DR
Sbjct: 119 KDAFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIILDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI EF P+EYWT+ A L K+S TF H + K L+ S + +++ +
Sbjct: 179 ETEISEFVPEEYWTITAKLAIKDS----TFEAKFHKLRGEKKELS-----SEADVQEVLK 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I ++++V ++ +R P+ TS+LQQ+AA KLNF A+ TM +AQ+LYEGV L
Sbjct: 230 AIGKSSYKVQDVKEKERLRNPSPPFTTSSLQQEAARKLNFRASKTMSVAQQLYEGVDLGK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD I+ A +E + +I ++YG PE PR+Y KK NAQ+AHEAI
Sbjct: 290 EGTVGLITYMRTDSTRIAASAQEEAKEIIIQKYGEDFVPE-SPRQYSKKSANAQDAHEAI 348
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + + D +LY L+W R MA QM A + + VDI A E+I FR++
Sbjct: 349 RPTSALRDPETVKPFMSRDQFRLYKLVWERFMASQMASAIMDTLSVDI-EAGETI-FRAA 406
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+V F GF Y E ++ + E +L L+ GD L VE KQH TQ
Sbjct: 407 GSKVRFPGFMKVY----------VEGNDDGKTEEDKLLPPLQPGDKLKKESVEPKQHFTQ 456
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEELGIGRPSTYA TL+ +Q R YV ++ + +P G +V +
Sbjct: 457 PPPRYTEARLVKTLEELGIGRPSTYAPTLETIQKRGYVAIEEKKFFPTELGELVIEQMEE 516
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSS------------------- 931
+F E+ + FTA+ME +LD+V G W +L D++ F
Sbjct: 517 FFPEILNVEFTANMEDDLDHVEDGEGNWVQVLSDFYESFEKRLEVAEEEMKEIEIKDEVS 576
Query: 932 --YCTCAQSLHIHQVEKMLEKTFGDSLFASLPN-----KD--RSCPVCGEGTLIFKVSRF 982
C S ++++ + K S F N KD +CP CGEG ++ + S+
Sbjct: 577 DVICDKCGSPMVYKLGR-FGKFLACSAFPDCRNTKPIVKDIGITCPTCGEGHVVERRSKK 635
Query: 983 GAGYFIGCNQHPRCNYIA 1000
G F GC+++P C++++
Sbjct: 636 GR-VFYGCDRYPECDFVS 652
>gi|208780496|ref|ZP_03247836.1| DNA topoisomerase I [Francisella novicida FTG]
gi|208743642|gb|EDZ89946.1| DNA topoisomerase I [Francisella novicida FTG]
Length = 764
Score = 458 bits (1178), Expect = e-125, Method: Compositional matrix adjust.
Identities = 263/707 (37%), Positives = 402/707 (56%), Gaps = 54/707 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES K K I+ YLG+ +E+L S+GHVR++ ++ S+ +D+F + + +
Sbjct: 2 AKNLVIVESPAKTKTIKKYLGNEFEILASFGHVREIPSKDTSIDVNDNFKIKFTTSEKSK 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
HL +IK A A+N+ LA+DPDREGEAI+WH+ E+L+ L + + RV F+EIT++
Sbjct: 62 KHLDAIKKAAKDAQNIYLATDPDREGEAISWHVQEVLKSARLLKDK-NIYRVTFNEITKS 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ +E+ +LV A AR+ALD+L+GFN+SPLLWRK+ SAGRVQS AL +I
Sbjct: 121 AVTNAIANPKELSMDLVDAQKARQALDFLVGFNLSPLLWRKITSGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTF---SFPAHLTHFQSKRLNQLSIGSHTEA 585
+RE+E + F Q+YW++ A DTF A+L F + ++ Q + + +A
Sbjct: 181 EREIERENFVKQDYWSLTA----------DTFKQKQIFANLLEFNNNKVEQFTFTTAEDA 230
Query: 586 KDIEQKI--NSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKL 642
++ + I ++ F ++ R+NP P+ITSTLQQ+A+ KL F+A TM AQKL
Sbjct: 231 ENAKAHILKDANGFLIVDGITEKKTRRNPYPPFITSTLQQEASKKLGFTAKRTMSTAQKL 290
Query: 643 YEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
YEG+ L +G + GLI+YMRTD ++S++A +IR+ I +Y P + PR + KK +N
Sbjct: 291 YEGIDLGNGESVGLISYMRTDSTNLSNDALNDIRNFIQAKYDKDMLPAK-PRVFEKKSQN 349
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
AQEAHEAIR T R P + L D KLYSLI++RT+ACQM+ AT+ VD+ +
Sbjct: 350 AQEAHEAIRVTAANRTPESIKQFLTNDEFKLYSLIYNRTIACQMKHATLNSTSVDLITEN 409
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
FR + + + GF Y + ++E+ L + G+ + L +V
Sbjct: 410 TKHKFRVTGTVIVDAGFLKIYNVEKDEDEKDSDDEQT--------LPKFEKGEKIILNDV 461
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
K H T+PP RY+E SLVK LE+ GIGRPSTYA+ + LQ R YV V R P +GR
Sbjct: 462 ITKAHSTEPPPRYTEASLVKALEKYGIGRPSTYATIISTLQQREYVEVDKRRFIPTDKGR 521
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ FL+ YF + +YS+TA +E ELD ++ ++ +L ++W F I
Sbjct: 522 IVNKFLTEYFKKYVEYSYTAGLEKELDEIAHHKNDYLSVLNNFWHPF-----------IE 570
Query: 943 QVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAK 1001
++ K+ E + +D CP CG + R G G FIGC +P C Y
Sbjct: 571 RINKISEDVSRKDVVQEELEED--CPECGSKLSL----RLGKNGRFIGCTNYPTCKY--- 621
Query: 1002 TLYGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
T D D ++ ++ +EP ++ P + +K G YG ++
Sbjct: 622 TRPVDSDPKEVIK-----EEPIVVEDRKCPKCNSDLHIKQGRYGKFI 663
>gi|389728770|ref|ZP_10189205.1| DNA topoisomerase I [Rhodanobacter sp. 115]
gi|388441317|gb|EIL97602.1| DNA topoisomerase I [Rhodanobacter sp. 115]
Length = 831
Score = 458 bits (1178), Expect = e-125, Method: Compositional matrix adjust.
Identities = 305/809 (37%), Positives = 434/809 (53%), Gaps = 59/809 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++++VES KAK I YLG ++VL SYGHVRDL + G+V + DF+M +E+
Sbjct: 2 AKNLLIVESPAKAKTINKYLGKDFQVLASYGHVRDLRPKEGAVDTEHDFAMAYEIIERNE 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
H+ +I A A+++ LA+D DREGEAI+WHI E+L+ + L E + RVVF EIT
Sbjct: 62 KHVDAIAKAARQADDIYLATDLDREGEAISWHISEILKDR-GLVEGKRMHRVVFSEITPK 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+IK A+ R++ ++V A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I
Sbjct: 121 AIKAAVAEPRQLSHDMVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI+ F +EYW+VEA L H+ FS A LT K+ Q + + +A
Sbjct: 181 EREEEIEAFVAREYWSVEARL----QHANGDFS--ARLTRLNGKKFEQFDLTNEADAMAA 234
Query: 589 EQKINS---ANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
+ V + + + R+ P+ TSTLQQ+AA KL FS + TMK+AQ LYEG
Sbjct: 235 RAALKEAAHGRLTVSEVASKERKRRPAAPFTTSTLQQEAARKLGFSTSRTMKVAQGLYEG 294
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
V L D GLITYMRTD +S++A E+R+LI +G P+ P+ Y K KNAQE
Sbjct: 295 VSLGDEGNVGLITYMRTDSTALSEDALSELRALIGRDFGDKALPD-APQVYKTKSKNAQE 353
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG---NAD 762
AHEA+RPT R P ++ L+++ KLY LIW RT+ACQM AT+ + VD A
Sbjct: 354 AHEAVRPTSAMRTPREVASYLNDEQRKLYELIWKRTVACQMIHATLNTVSVDFALPHTAG 413
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
FR++ + V GF A YE+ ++ + D + L L+ G+ + L ++
Sbjct: 414 GDAAFRATGTTVVDPGFLAVYEE-------GRDQKSADDEDEGRRLPKLEKGEEVPLQDI 466
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
QH T+PP RYSE SLVK LEE GIGRPSTYAS ++VL +R+YV + SR P GR
Sbjct: 467 LADQHFTEPPPRYSEASLVKALEEYGIGRPSTYASIIQVLLNRDYVLLDSRRFKPTDVGR 526
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
V FL+ +FS DY FTA +E ELD VS G W L+ +W F
Sbjct: 527 AVGKFLTQHFSRYVDYDFTAKLEDELDAVSRGEEAWIPLMQRFWQPFK-----------Q 575
Query: 943 QVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
QV++ E D AS + + P G+ + ++ RFG IG A
Sbjct: 576 QVDEKTETV--DRSEASGARELGADPKTGKPVFV-RLGRFGPYAAIGDKDSDEKLQFASL 632
Query: 1003 LYGDDDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRAS 1061
G TL+ + + P+ +G E V + G +G +V+ G + Y AS
Sbjct: 633 RPGQSMHTITLEDALELFKLPRKLGAADNGDE-VSVGIGRFGPFVKQG---STY----AS 684
Query: 1062 VSHIKDVDSITLEDALELL---------RYPVNLGNHPKDGQPIMLRLARAGFSVRHRRT 1112
+ D +I L AL+L+ R ++ GN + + R G +
Sbjct: 685 LKPEDDPYTIELPRALQLVADKLEMLANRIILDFGNG------VQVLNGRYGPYITDGEK 738
Query: 1113 IASVPKNMKPNDVTLEKALEFLSGKDVRR 1141
A +PK +P ++T + +E L+ V++
Sbjct: 739 NARIPKEQEPKELTEAQCVELLAAAPVKK 767
>gi|15837522|ref|NP_298210.1| DNA topoisomerase I [Xylella fastidiosa 9a5c]
gi|32141378|sp|Q9PEV8.1|TOP1_XYLFA RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase I;
AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName: Full=Untwisting
enzyme
gi|9105841|gb|AAF83730.1|AE003931_7 DNA topoisomerase I [Xylella fastidiosa 9a5c]
Length = 815
Score = 457 bits (1177), Expect = e-125, Method: Compositional matrix adjust.
Identities = 292/807 (36%), Positives = 434/807 (53%), Gaps = 59/807 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V P++ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPENGFAMRYDLIDKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A A+++ LA+DPDREGEAI+WHI E+L+++ L + + R+VF EIT +
Sbjct: 63 HVEAITKAAKTADSIYLATDPDREGEAISWHISEILKERGLLKDK-PMQRIVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+Q R I ++LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAIQKPRMIASDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F +EYW++ A H F A L ++ Q +I A +
Sbjct: 182 REEEIEAFITREYWSIHAECAHPAQH------FSAKLIKLDGQKFEQFTITDSDTAAAAQ 235
Query: 590 ---QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
Q++ + + + R+ P+ITSTLQQ+A+ KL F+ TM++AQKLYEG+
Sbjct: 236 RRIQQVAQGRLHITDVTNKERKRRPAPPFITSTLQQEASRKLGFTTRKTMQIAQKLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L + + GLITYMRTD +++S +A EIR +I YG++ P++ P Y K KNAQEA
Sbjct: 296 ALGEEGSVGLITYMRTDSVNLSLDALSEIRDIIARDYGTNALPDK-PNVYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R P ++ L + +LY L+W R +A QM PA + VD+ +E V
Sbjct: 355 HEAVRPTSALRTPTQVAPYLSNEEHRLYELVWKRAVASQMIPAILNTTSVDLAAGNEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ + V GF A YE+ K+N+ + + L +KTG+ + L + +Q
Sbjct: 414 FRATGTTVVVQGFLAVYEE-------GKDNKNAEDDDEGRKLPVMKTGENVPLERILTEQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RY+E +LVK LEE GIGRPSTYAS ++ L R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRYTEAALVKALEEYGIGRPSTYASIIQTLLFRKYVDMEGRSFRPTDIGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL+ +F+ DY FTA +E ELD +S G EW L+ +W F + +
Sbjct: 527 FLASHFTRYVDYDFTAHLEDELDAISRGEEEWIPLMKKFWVPFKEL--------VEDKKD 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGC---NQHPRCNYI--AK 1001
L+KT S+ + V G ++ RFG IG + PR + +
Sbjct: 579 SLDKTDAGSVRLLGIDPTSGKEVSG------RIGRFGPMVQIGTVDDEEKPRFASLRPNQ 632
Query: 1002 TLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKV-LLKSGPYG----FYVQLGEDRTGYL 1056
++Y EE P+++G + + V + + GP+ YV L + Y
Sbjct: 633 SIYSISLEEAI----ELFKMPRVLGEDQSQQVSVGIGRFGPFAKRGSTYVSLKSEDDPYT 688
Query: 1057 PKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASV 1116
A + + I ++ + R N N I + R G + + +
Sbjct: 689 IDLARATFL-----INEKEEIARNRIIKNFEN-----SQIQVLNGRFGPYISDGKLNGKI 738
Query: 1117 PKNMKPNDVTLEKALEFL--SGKDVRR 1141
PK+ +P +TLE+A + L +GK R+
Sbjct: 739 PKDREPASLTLEEAQQLLIDTGKPARK 765
>gi|156741671|ref|YP_001431800.1| DNA topoisomerase I [Roseiflexus castenholzii DSM 13941]
gi|156232999|gb|ABU57782.1| DNA topoisomerase I [Roseiflexus castenholzii DSM 13941]
Length = 836
Score = 457 bits (1177), Expect = e-125, Method: Compositional matrix adjust.
Identities = 267/661 (40%), Positives = 380/661 (57%), Gaps = 40/661 (6%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KA+ IQ YLG Y V S GHVRDL + V + +F+ V+E+
Sbjct: 2 GEKLVIVESPAKARTIQKYLGSGYRVEASMGHVRDLPKSNLGVDLEANFAPVYEISPGKE 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+ +++ ++ A+ + LA+DPDREGEAIAWHI E + + + V RVVF EIT
Sbjct: 62 KIIAALRKSIRQADAVYLATDPDREGEAIAWHITEAAK----IPRDKPVYRVVFTEITPG 117
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+++ A+ + R+ID LV A ARR LD L+G+ +SPLLW K+ SAGRVQS A+ LI
Sbjct: 118 AVRSAMASPRDIDRRLVDAQQARRVLDRLVGYKLSPLLWEKVRRGLSAGRVQSVAVRLIV 177
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI+ F PQEYWT+EA L K+ + +F A L K+L + IG+ +A+ I
Sbjct: 178 EREREIEAFVPQEYWTIEADLLKQNASDSQRDAFRAMLIERSGKKLEKFDIGASDQAQAI 237
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ A + V K ++R R P+ TSTLQQ+A KL FSA TM +AQ+LYEGV +
Sbjct: 238 IADLEGAAYIVRKVTRRDKRRSPAPPFTTSTLQQEAGRKLGFSAKRTMAVAQQLYEGVDI 297
Query: 649 -PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
D GLITYMRTD +++S EA +E R +I ER+G + P + P Y K K AQEAH
Sbjct: 298 GGDEGLVGLITYMRTDSVNVSREAQEEARRVIRERFGEAYLPAKPP-VYKTKAKGAQEAH 356
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--------- 758
EAIRPT RR P + L D +LY LIW R +A QM+ A VDI
Sbjct: 357 EAIRPTLSRRTPEQVQPYLTSDQYRLYDLIWKRFVASQMEAAVFDSTVVDIGAGRDIGGR 416
Query: 759 GNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLY 818
G + FR++ S ++F GF A Y + +E+E+++R L L+ G+ L
Sbjct: 417 GAGSDPYTFRATGSVLKFPGFLAVY---NVSLDEGEEDEDSERR-----LPLLEEGEALN 468
Query: 819 LGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPE 878
L ++ QH T+PP R++E SLVK+LE LGIGRPSTYA T+ + +R YV + + L P
Sbjct: 469 LLQLLPVQHFTEPPPRFTEASLVKELERLGIGRPSTYAPTISTIIEREYVELADKKLVPT 528
Query: 879 FRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQ- 937
GR+V+ L +F + DY FT++ME +LD+++ G EW +L ++ F AQ
Sbjct: 529 TLGRVVTDLLVEHFPSIVDYGFTSEMEQQLDDIAEGEKEWAPVLRAFYRPFEQKLAEAQR 588
Query: 938 SLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
S+ + E++L D +CP C +G L K R G F+ CN++P C+
Sbjct: 589 SMRNVKREEIL--------------TDLTCPRCNQGQLAVKFGR--NGEFLACNRYPECD 632
Query: 998 Y 998
+
Sbjct: 633 F 633
Score = 48.1 bits (113), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 966 SCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
+CP CG+G L+ + +FG +F GCN++P+C+Y+ +L
Sbjct: 708 TCPKCGQGELLERRGKFGRPFF-GCNRYPKCDYLVNSL 744
>gi|118497039|ref|YP_898089.1| DNA topoisomerase I [Francisella novicida U112]
gi|194324274|ref|ZP_03058048.1| DNA topoisomerase I [Francisella novicida FTE]
gi|118422945|gb|ABK89335.1| DNA topoisomerase I [Francisella novicida U112]
gi|194321721|gb|EDX19205.1| DNA topoisomerase I [Francisella tularensis subsp. novicida FTE]
Length = 764
Score = 457 bits (1177), Expect = e-125, Method: Compositional matrix adjust.
Identities = 263/707 (37%), Positives = 402/707 (56%), Gaps = 54/707 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES K K I+ YLG+ +E+L S+GHVR++ ++ S+ +D+F + + +
Sbjct: 2 AKNLVIVESPAKTKTIKKYLGNEFEILASFGHVREIPSKDTSIDVNDNFKIKFTTSEKSK 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
HL +IK A A+N+ LA+DPDREGEAI+WH+ E+L+ L + + RV F+EIT++
Sbjct: 62 KHLDAIKKAAKDAQNIYLATDPDREGEAISWHVQEVLKSARLLKDK-NIYRVTFNEITKS 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ +E+ +LV A AR+ALD+L+GFN+SPLLWRK+ SAGRVQS AL +I
Sbjct: 121 AVTNAIANPKELSMDLVDAQKARQALDFLVGFNLSPLLWRKITSGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTF---SFPAHLTHFQSKRLNQLSIGSHTEA 585
+RE+E + F Q+YW++ A DTF A+L F + ++ Q + + +A
Sbjct: 181 EREIERENFVKQDYWSLTA----------DTFKQKQIFANLLEFNNNKVEQFTFTTAEDA 230
Query: 586 KDIEQKI--NSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKL 642
++ + I ++ F ++ R+NP P+ITSTLQQ+A+ KL F+A TM AQKL
Sbjct: 231 ENAKAHILKDANGFLIVDGITEKKTRRNPYPPFITSTLQQEASKKLGFTAKRTMSTAQKL 290
Query: 643 YEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
YEG+ L +G + GLI+YMRTD ++S++A +IR+ I +Y P + PR + KK +N
Sbjct: 291 YEGIDLGNGESVGLISYMRTDSTNLSNDALNDIRNFIQAKYDKDMLPAK-PRVFEKKSQN 349
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
AQEAHEAIR T R P + L D KLYSLI++RT+ACQM+ AT+ VD+ +
Sbjct: 350 AQEAHEAIRVTAANRTPESIKQFLTNDEFKLYSLIYNRTIACQMKHATLNSTSVDLITEN 409
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
FR + + + GF Y + ++E+ L + G+ + L +V
Sbjct: 410 TKHRFRVTGTVIVDAGFLKIYNVEKDEDEKDSDDEQT--------LPKFEKGEKIILNDV 461
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
K H T+PP RY+E SLVK LE+ GIGRPSTYA+ + LQ R YV V R P +GR
Sbjct: 462 ITKAHSTEPPPRYTEASLVKALEKYGIGRPSTYATIISTLQQREYVEVDKRRFIPTDKGR 521
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ FL+ YF + +YS+TA +E ELD ++ ++ +L ++W F I
Sbjct: 522 IVNKFLTEYFKKYVEYSYTAGLEKELDEIAHHKNDYLSVLNNFWHPF-----------IE 570
Query: 943 QVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAK 1001
++ K+ E + +D CP CG + R G G FIGC +P C Y
Sbjct: 571 RINKISEDVSRKDVVQEELEED--CPECGSKLSL----RLGKNGRFIGCTNYPTCKY--- 621
Query: 1002 TLYGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
T D D ++ ++ +EP ++ P + +K G YG ++
Sbjct: 622 TRPVDSDPKEVIK-----EEPIVVEDRKCPKCNSDLHIKQGRYGKFI 663
>gi|418521996|ref|ZP_13088035.1| DNA topoisomerase I [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410701620|gb|EKQ60138.1| DNA topoisomerase I [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
Length = 814
Score = 457 bits (1177), Expect = e-125, Method: Compositional matrix adjust.
Identities = 299/802 (37%), Positives = 433/802 (53%), Gaps = 61/802 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V PD+ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A GA+++ LA+DPDRE I E+L+++ + RVVF EIT +
Sbjct: 63 HVEAIARAAKGADDIFLATDPDRE------DIAEILKEK-------PMQRVVFTEITPRA 109
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+ R I +LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 110 IKEAMAKPRMIAGDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 169
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI--GSHTEAKD 587
RE EI+ F P+EYW+++A H F+ A L ++ Q ++ G EA
Sbjct: 170 REEEIEAFIPREYWSIDAHC----RHPSQAFN--ARLIKLDGQKFEQFTVTDGDTAEAAR 223
Query: 588 IE-QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ Q+ V + + R+ P+ TSTLQQ+A+ KL F+ TM++AQKLYEGV
Sbjct: 224 LRIQQAAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGV 283
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L D + GLI+YMRTD +++S +A EIR +I +G+ P++ P Y K KNAQEA
Sbjct: 284 ALGDEGSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQ-PNAYTTKSKNAQEA 342
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R PA ++ L ED +LY LIW R +ACQM PAT+ + VD+ E V
Sbjct: 343 HEAVRPTSALRTPAQVARFLSEDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEH-V 401
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + V GF A YE+ + E+E+ R L +K GD + L + Q
Sbjct: 402 FRASGTTVVVPGFLAVYEE--GKDTKSSEDEDEGRK-----LPLMKAGDNVPLDRIVTDQ 454
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP R++E +LVK LEE GIGRPSTYAS ++ LQ R YV ++ R P GR VS
Sbjct: 455 HFTQPPPRFTEAALVKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSK 514
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FLS +F+ DY FTA++E +LD VS G EW L+ +W F + +
Sbjct: 515 FLSGHFTRYVDYDFTANLEDDLDAVSRGEAEWIPLMEKFWGPFKEL--------VEDKKD 566
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
L+KT D+ + D PV G+ + ++ RFG IG + A G
Sbjct: 567 SLDKT--DAGSVRVLGTD---PVSGK-EVSARIGRFGPMVQIGTVEDEDKPTFASLRPGQ 620
Query: 1007 DDEEDTLQRNTNVDE-PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+L+ + + P+ +G + V + G +G + + G + Y AS+
Sbjct: 621 SIYSISLEDALELFKMPRALGQD--KDQDVSVGIGRFGPFARRG---STY----ASLKKE 671
Query: 1066 KDVDSITLEDALELLRYPVNLGNH----PKDGQPIMLRLARAGFSVRHRRTIASVPKNMK 1121
D +I L A+ L+ + + DG I + R G + + +PK+ +
Sbjct: 672 DDPYTIDLARAVFLIEEKEEIARNRVIKEFDGSDIQVLNGRFGPYISDGKLNGKIPKDRE 731
Query: 1122 PNDVTLEKALEFL--SGKDVRR 1141
P +T E+ + L +GK VR+
Sbjct: 732 PASLTFEEVQQLLADTGKPVRK 753
>gi|387886129|ref|YP_006316428.1| DNA topoisomerase I [Francisella noatunensis subsp. orientalis str.
Toba 04]
gi|386870945|gb|AFJ42952.1| DNA topoisomerase I [Francisella noatunensis subsp. orientalis str.
Toba 04]
Length = 765
Score = 457 bits (1176), Expect = e-125, Method: Compositional matrix adjust.
Identities = 262/705 (37%), Positives = 408/705 (57%), Gaps = 50/705 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES K K I+ YLG+ + +L S+GHVR++ ++ S+ +DDF + + +
Sbjct: 2 AKNLVIVESPAKTKTIKKYLGNDFNILASFGHVREIPSKDTSIDVNDDFKIKFTTSEKSK 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
HL +IK + AEN+ LA+DPDREGEAI+WH+ E+L+ L + V RV F+EIT++
Sbjct: 62 KHLDAIKKSAKNAENIYLATDPDREGEAISWHVQEVLKNARLLKDK-NVYRVTFNEITKS 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A++ +E+ +LV A AR+ALD+L+GFN+SPLLWRK+ SAGRVQS AL +I
Sbjct: 121 AVTNAIENPKELSMDLVNAQKARQALDFLVGFNLSPLLWRKITSGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE+E + F Q+YW++ A + K++ A+L F ++ Q + + +A
Sbjct: 181 EREIERENFIKQDYWSLTADVFKQKQ-------IFANLIEFNKTKVEQFTFTAEKDADKA 233
Query: 589 EQKI--NSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
+ I ++ F +++ R+NP P+ITSTLQQ+A+ KL F+A TM AQKLYEG
Sbjct: 234 KSTIVKDANGFLIVEGITEKKTRRNPYPPFITSTLQQEASKKLGFTAQRTMSTAQKLYEG 293
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
+ L +G + GLI+YMRTD ++S++A +IR++I ++ + P + PR + KK +NAQE
Sbjct: 294 IDLGNGESVGLISYMRTDSTNLSNDALNDIRNIIESKFDNDMLPSK-PRIFGKKSQNAQE 352
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEAIR T R P + L D KLYSLI++RT+ACQM+ AT+ VD+ +
Sbjct: 353 AHEAIRVTAANRTPESIKQHLTSDEFKLYSLIYNRTIACQMKHATLNSASVDLITENTKH 412
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
FR + + + GF Y + +++E+ L + G+ + L ++ +K
Sbjct: 413 KFRVTGTVIVDAGFLKIYNVEKDEDEKDEDDEQT--------LPKFEKGEKIPLSDIIIK 464
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
H T+PP RY+E SLVK LE+ GIGRPSTYA+ + LQ R+YV V R P +GR+V+
Sbjct: 465 AHSTEPPPRYTEASLVKALEKHGIGRPSTYATIISTLQQRDYVEVDKRRFIPTDKGRIVN 524
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
FL+ YF + +YS+TA +E ELD ++ + +L ++W F I ++
Sbjct: 525 KFLTEYFKKYIEYSYTAGLEKELDGIANHKNNYLTVLNNFWKPF-----------IERIN 573
Query: 946 KMLEK-TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAKTL 1003
K+ E + D + L D CP CG SR G G FIGC +P C Y +
Sbjct: 574 KISEGISRKDVVQEEL---DEDCPECGSKL----SSRLGKNGRFIGCTNYPTCKYTRRI- 625
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
D+D ++ + +EP ++ P + + +K G YG ++
Sbjct: 626 --DNDGKEIEK-----EEPTIVEGRKCPECESDLHIKQGRYGKFI 663
>gi|254373870|ref|ZP_04989352.1| DNA topoisomerase [Francisella novicida GA99-3548]
gi|151571590|gb|EDN37244.1| DNA topoisomerase [Francisella novicida GA99-3548]
Length = 764
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 263/707 (37%), Positives = 402/707 (56%), Gaps = 54/707 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES K K I+ YLG+ +E+L S+GHVR++ ++ S+ +D+F + + +
Sbjct: 2 AKNLVIVESPAKTKTIKKYLGNEFEILASFGHVREIPSKDTSIDVNDNFKIKFTTSEKSK 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
HL +IK A A+N+ LA+DPDREGEAI+WH+ E+L+ L + + RV F+EIT++
Sbjct: 62 KHLDAIKKAAKDAQNIYLATDPDREGEAISWHVQEVLKSARLLKDK-NIYRVTFNEITKS 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ +E+ +LV A AR+ALD+L+GFN+SPLLWRK+ SAGRVQS AL +I
Sbjct: 121 AVTNAIANPKELSMDLVDAQKARQALDFLVGFNLSPLLWRKITSGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTF---SFPAHLTHFQSKRLNQLSIGSHTEA 585
+RE+E + F Q+YW++ A DTF A+L F + ++ Q + + +A
Sbjct: 181 EREIERENFVKQDYWSLTA----------DTFKQKQIFANLLEFNNNKVEQFTFTTAEDA 230
Query: 586 KDIEQKI--NSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKL 642
++ + I ++ F ++ R+NP P+ITSTLQQ+A+ KL F+A TM AQKL
Sbjct: 231 ENAKVHILKDANGFLIVDGITEKKTRRNPYPPFITSTLQQEASKKLGFTAKRTMSTAQKL 290
Query: 643 YEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
YEG+ L +G + GLI+YMRTD ++S++A +IR+ I +Y P + PR + KK +N
Sbjct: 291 YEGIDLGNGESVGLISYMRTDSTNLSNDALNDIRNFIQAKYDKDMLPAK-PRVFEKKSQN 349
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
AQEAHEAIR T R P + L D KLYSLI++RT+ACQM+ AT+ VD+ +
Sbjct: 350 AQEAHEAIRVTAANRTPESIKQFLTNDEFKLYSLIYNRTIACQMKHATLNSTSVDLITEN 409
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
FR + + + GF Y + ++E+ L + G+ + L +V
Sbjct: 410 TKHKFRVTGTVIVDAGFLKIYNVEKDEDDKDSDDEQT--------LPKFEKGEKITLNDV 461
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
K H T+PP RY+E SLVK LE+ GIGRPSTYA+ + LQ R YV V R P +GR
Sbjct: 462 ITKAHSTEPPPRYTEASLVKALEKYGIGRPSTYATIISTLQQREYVEVDKRRFIPTDKGR 521
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ FL+ YF + +YS+TA +E ELD ++ ++ +L ++W F I
Sbjct: 522 IVNKFLTEYFKKYVEYSYTAGLEKELDEIAHHKNDYLSVLNNFWHPF-----------IE 570
Query: 943 QVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAK 1001
++ K+ E + +D CP CG + R G G FIGC +P C Y
Sbjct: 571 RINKISEDVSRKDVVQEELEED--CPECGSKLSL----RLGKNGRFIGCTNYPTCKY--- 621
Query: 1002 TLYGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
T D D ++ ++ +EP ++ P + +K G YG ++
Sbjct: 622 TRPVDSDPKEVIK-----EEPIVVEDRKCPKCNSDLHIKQGRYGKFI 663
>gi|385792357|ref|YP_005825333.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676503|gb|AEB27373.1| DNA topoisomerase I [Francisella cf. novicida Fx1]
Length = 764
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 263/707 (37%), Positives = 402/707 (56%), Gaps = 54/707 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES K K I+ YLG+ +E+L S+GHVR++ ++ S+ +D+F + + +
Sbjct: 2 AKNLVIVESPAKTKTIKKYLGNEFEILASFGHVREIPSKDTSIDVNDNFKIKFTTSEKSK 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
HL +IK A A+N+ LA+DPDREGEAI+WH+ E+L+ L + + RV F+EIT++
Sbjct: 62 KHLDAIKKAAKDAQNIYLATDPDREGEAISWHVQEVLKSARLLKDK-NIYRVTFNEITKS 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ +E+ +LV A AR+ALD+L+GFN+SPLLWRK+ SAGRVQS AL +I
Sbjct: 121 AVTNAIANPKELSMDLVDAQKARQALDFLVGFNLSPLLWRKITSGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTF---SFPAHLTHFQSKRLNQLSIGSHTEA 585
+RE+E + F Q+YW++ A DTF A+L F + ++ Q + + +A
Sbjct: 181 EREIERENFVKQDYWSLTA----------DTFKQKQIFANLLEFNNNKVEQFTFTTAEDA 230
Query: 586 KDIEQKI--NSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKL 642
++ + I ++ F ++ R+NP P+ITSTLQQ+A+ KL F+A TM AQKL
Sbjct: 231 ENAKVHILKDANGFLIVDGITEKKTRRNPYPPFITSTLQQEASKKLGFTAKRTMSTAQKL 290
Query: 643 YEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
YEG+ L +G + GLI+YMRTD ++S++A +IR+ I +Y P + PR + KK +N
Sbjct: 291 YEGIDLGNGESVGLISYMRTDSTNLSNDALNDIRNFIQAKYDKDMLPAK-PRVFEKKSQN 349
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
AQEAHEAIR T R P + L D KLYSLI++RT+ACQM+ AT+ VD+ +
Sbjct: 350 AQEAHEAIRVTAANRTPESIKQFLTNDEFKLYSLIYNRTIACQMKHATLNSTSVDLITEN 409
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
FR + + + GF Y + ++E+ L + G+ + L +V
Sbjct: 410 TKHKFRVTGTVIVDAGFLKIYNVEKDEDDKDSDDEQT--------LPKFEKGEKITLNDV 461
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
K H T+PP RY+E SLVK LE+ GIGRPSTYA+ + LQ R YV V R P +GR
Sbjct: 462 ITKAHSTEPPPRYTEASLVKALEKYGIGRPSTYATIISTLQQREYVEVDKRRFIPTDKGR 521
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ FL+ YF + +YS+TA +E ELD ++ ++ +L ++W F I
Sbjct: 522 IVNKFLTEYFKKYVEYSYTAGLEKELDEIAHHKNDYLSVLNNFWHPF-----------IE 570
Query: 943 QVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAK 1001
++ K+ E + +D CP CG + R G G FIGC +P C Y
Sbjct: 571 RINKISEDVSRKDVVQEELEED--CPECGSKLSL----RLGKNGRFIGCTNYPTCKY--- 621
Query: 1002 TLYGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
T D D ++ ++ +EP ++ P + +K G YG ++
Sbjct: 622 TRPVDSDPKEVIK-----EEPIVVEDRKCPKCNSDLHIKQGRYGKFI 663
>gi|187931306|ref|YP_001891290.1| DNA topoisomerase I [Francisella tularensis subsp. mediasiatica
FSC147]
gi|187712215|gb|ACD30512.1| DNA topoisomerase I [Francisella tularensis subsp. mediasiatica
FSC147]
Length = 764
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 263/707 (37%), Positives = 401/707 (56%), Gaps = 54/707 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES K K I+ YLG+ +E+L S+GHVR++ ++ S+ +D+F + + +
Sbjct: 2 AKNLVIVESPAKTKTIKKYLGNEFEILASFGHVREIPSKDTSIDVNDNFKIKFTTSEKSK 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
HL +IK A A+N+ LA+DPDREGEAI+WH+ E+L+ L + + RV F+EIT++
Sbjct: 62 KHLDAIKKAAKDAQNIYLATDPDREGEAISWHVQEVLKSARLLKDK-NIYRVTFNEITKS 120
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A+ +E+ +LV A AR+ALD+L+GFNISPLLWRK+ SAGRVQS AL +I
Sbjct: 121 AVTNAIANPKELSMDLVGAQKARQALDFLVGFNISPLLWRKITSGLSAGRVQSPALRMIV 180
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTF---SFPAHLTHFQSKRLNQLSIGSHTEA 585
+RE+E + F Q+YW++ A DTF A+L F + ++ Q + + +A
Sbjct: 181 EREIERENFIKQDYWSLTA----------DTFKQKQIFANLLEFNNNKVEQFTFTTAEDA 230
Query: 586 KDIEQKI--NSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKL 642
++ + I ++ F ++ R+NP P+ITSTLQQ+A+ KL F+A TM QKL
Sbjct: 231 ENAKAHILKDAKGFLIVDGITEKKTRRNPYPPFITSTLQQEASKKLGFTAKRTMSTTQKL 290
Query: 643 YEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
YEG+ L +G + GLI+YMRTD ++S++A +IR+ I +Y P + PR + KK +N
Sbjct: 291 YEGIDLGNGESVGLISYMRTDSTNLSNDALNDIRNFIQAKYDKDMLPAK-PRVFEKKSQN 349
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
AQEAHEAIR T R P + L D KLYSLI++RT+ACQM+ AT+ VD+ +
Sbjct: 350 AQEAHEAIRVTAANRTPESIKQFLTNDEFKLYSLIYNRTIACQMKHATLNSTSVDLITEN 409
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
FR + + + GF Y + ++E+ L + G+ + L +V
Sbjct: 410 TKHRFRVTGTVIVDAGFLKIYNVEKDEDEKDSDDEQT--------LPKFEKGEKIILNDV 461
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
K H T+PP RY+E SLVK LE+ GIGRPSTYA+ + LQ R YV V R P +GR
Sbjct: 462 ITKAHSTEPPPRYTEASLVKALEKYGIGRPSTYATIISTLQQREYVEVDKRRFIPTDKGR 521
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ FL+ YF + +YS+TA +E ELD ++ ++ +L ++W F I
Sbjct: 522 IVNKFLTEYFKKYVEYSYTAGLEKELDEIAHHKNDYLSVLNNFWHPF-----------IE 570
Query: 943 QVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRCNYIAK 1001
++ K+ E + +D CP CG + R G G FIGC +P C Y
Sbjct: 571 RINKISEDVSRKDVVQEELEED--CPECGSKLSL----RLGKNGRFIGCTNYPTCKY--- 621
Query: 1002 TLYGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
T D D ++ ++ +EP ++ P + +K G YG ++
Sbjct: 622 TRPVDSDPKEVIK-----EEPIVVEDRKCPKCNSGLHIKQGRYGKFI 663
>gi|218461549|ref|ZP_03501640.1| DNA topoisomerase I [Rhizobium etli Kim 5]
Length = 506
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 245/517 (47%), Positives = 330/517 (63%), Gaps = 18/517 (3%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
+VVVVES KAK I YLG Y+VL S+GHVRDL A+ GSV PD DF M+WEV A+
Sbjct: 2 NVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDGASAKR 61
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I A+ ++ L LA+DPDREGEAI+WH+++ML ++ L+ +V RVVF+ IT+ ++
Sbjct: 62 MKDIAEAVKSSDGLFLATDPDREGEAISWHVLDMLNKKRVLNGK-SVKRVVFNAITKKAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
A+ R+ID LV AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS AL L+CDR
Sbjct: 121 LDAMADPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F +EYW + A+L F A L KRL +IG+ +A ++
Sbjct: 181 ESEIERFISEEYWNLSALLKTPRGD-----EFEARLVSANGKRLPPRAIGNGEDAGRLKA 235
Query: 591 KINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A++ ++ + V++NP P+ TSTLQQ A++ L FSA+ TM++AQKLYEGV +
Sbjct: 236 LLEGASY-IVDTVEAKPVKRNPGPPFTTSTLQQAASSNLGFSASRTMQIAQKLYEGVDI- 293
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTDG+ ++ EA R I +++G + PE+ R Y K KNAQEAHEA
Sbjct: 294 GGETVGLITYMRTDGVQMAPEAIDAARRAILDQFGERYLPEKA-RFYSTKAKNAQEAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVF 767
IRPTD R P L LD D ++LY LIW R +A QM A + + +I N E
Sbjct: 353 IRPTDFYRSPDRLRKFLDADQIRLYELIWKRGIASQMASAEIERTTAEITADNKGEKAGL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S + F GF AAY D + ++ E++D + L + + L ++ QH
Sbjct: 413 RAVGSVIRFDGFIAAYTD------QKEDGEQSDDGDEDGRLPEINARETLAKQKINSTQH 466
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQD 864
T+PP RYSE SL+KK+EELGIGRPSTYA+TL L+D
Sbjct: 467 FTEPPPRYSEASLIKKMEELGIGRPSTYAATLATLRD 503
>gi|304404236|ref|ZP_07385898.1| DNA topoisomerase I [Paenibacillus curdlanolyticus YK9]
gi|304347214|gb|EFM13046.1| DNA topoisomerase I [Paenibacillus curdlanolyticus YK9]
Length = 704
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 266/646 (41%), Positives = 364/646 (56%), Gaps = 42/646 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES KAK I YLG Y V S GH+RDL V ++DF+ + +
Sbjct: 4 SLVIVESPAKAKTIGKYLGSKYIVKASMGHIRDLPKSQIGVEVENDFNPKYITIRGKGSI 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A +N+ LA+DPDREGEAIAWH+ L+ +A RVVF+EIT+ ++
Sbjct: 64 LKELKDASKKVKNVYLAADPDREGEAIAWHLAHYLELDEA-----NSCRVVFNEITKQAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R I+ +LV A ARR LD L+G+ ISPLLW+K+ SAGRVQS + LI DR
Sbjct: 119 KDAFKTPRPINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVTVKLIIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EID F P+EYWT+ A L K ++ F H + + LN S + + I
Sbjct: 179 ENEIDAFVPEEYWTITARLMKGDA----AFDAKFHSISGEKRELN-----SEADVQAILA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++N A F V + ++ +R P+ITS+LQQ+AA KL F A+ TM +AQ+LYEGV L
Sbjct: 230 EMNGAPFTVSEVREKERLRNPAPPFITSSLQQEAARKLGFRASKTMSVAQQLYEGVDLGK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A +E + I +YG+ + PEE PR Y +K NAQ+AHEAI
Sbjct: 290 EGTVGLITYMRTDSTRISPVAQEEAKEFITNKYGASYFPEE-PRIYVRKNSNAQDAHEAI 348
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT + R P + L D L+LY L+W R +A QM A + + VD+ A+E+ FR+
Sbjct: 349 RPTSVMREPDQMKEFLSRDQLRLYKLVWERFVASQMSSAILDTMTVDL-KANET-GFRAV 406
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+V+F GF Y + N++ ++ L +L GD + ++ KQH TQ
Sbjct: 407 GSKVKFSGFMKVY---------VEGNDDGTPNDDDKFLPALAIGDTIVTEAIDPKQHFTQ 457
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEELGIGRPSTYA TL+ +Q R YV ++ + P G +VS +
Sbjct: 458 PPPRYTEARLVKTLEELGIGRPSTYAPTLETVQKRGYVAIEEKKFIPTELGDLVSQLMEE 517
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F E+ D FTA ME ELD+V G W +L D++ F A+ E+M E
Sbjct: 518 FFPEILDAEFTAQMEDELDHVEDGKENWVKVLADFYESFEKRLEVAE-------EEMKEI 570
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D + D C CG L++K+ RFG F+ C+ P C
Sbjct: 571 ELQDEV------SDEICEKCGR-HLVYKMGRFGK--FLACSGFPEC 607
>gi|269925605|ref|YP_003322228.1| DNA topoisomerase I [Thermobaculum terrenum ATCC BAA-798]
gi|269789265|gb|ACZ41406.1| DNA topoisomerase I [Thermobaculum terrenum ATCC BAA-798]
Length = 711
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 264/655 (40%), Positives = 373/655 (56%), Gaps = 46/655 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES TKAK I YLG Y + S GHVRDL V + DF + +P +
Sbjct: 5 LVIVESPTKAKTISRYLGRGYSIKASMGHVRDLPKSKLGVDTEHDFQPQYLIPRDKSKTV 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K +++ A + LA+DPDREGEAIAWH++ Q + RVVFHEIT +++
Sbjct: 65 KELKESVASAREVYLATDPDREGEAIAWHLI-----QATGMDTSKARRVVFHEITPDAVR 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ REID LV A ARR LD L+G+NISPLLW+K+ SAGRVQS AL L+ DRE
Sbjct: 120 NAMANPREIDMRLVDAQQARRVLDRLVGYNISPLLWKKVKRGLSAGRVQSVALRLVVDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQS--KRLN--QLSIGSHTEAKD 587
EI F P EYWT+ A L K+ + P+ F++ R+N ++ I + +A+
Sbjct: 180 REIQSFVPVEYWTISADLAKQPAKGRK----PSRKDQFRALLVRINDEKVEISNEEQARA 235
Query: 588 IEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
I + + A ++V++ +R + RK P+ITST+QQ+A+ KLNF+A TM +AQ LYEGV
Sbjct: 236 IIEALEGATYKVLEVKQREIQRKPAPPFITSTMQQEASRKLNFNARRTMSVAQSLYEGVS 295
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
L D GLITYMRTD +++ A +E R +I + +G + PE+ P Y KK KNAQEAH
Sbjct: 296 LGDEGDVGLITYMRTDSTNVATVAQEEARQVIAQLFGDKYLPEKPP-VYTKKAKNAQEAH 354
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES--- 764
EAIRPT ++R P + L D KLY LIW R +A QM A + VDI S
Sbjct: 355 EAIRPTSVKRHPDAIKQYLTSDQYKLYKLIWQRFIASQMANAIIDGTTVDIAAEPRSGGA 414
Query: 765 -IVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFA--ILNSLKTGDPLYLGE 821
+FR++ S ++F GF + Y+E +++D+ E L + G+ L L +
Sbjct: 415 PYIFRATGSVIKFDGF----------LVVYQEGKDDDQEEELGSKALPPMTEGEVLNLIQ 464
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRG 881
+ +QH TQPP RY+E SLVK LEE GIGRPSTYA L LQ+R YV + L P G
Sbjct: 465 LLPEQHFTQPPPRYTEASLVKALEEQGIGRPSTYAIILSTLQERYYVVKDGKALVPTELG 524
Query: 882 RMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI 941
+V+ L +F ++ D +FT+ ME ELD++++G W ++ +++ F A+
Sbjct: 525 MLVNDLLVEHFPDIVDVNFTSQMEEELDDIASGERAWVPVIKEFYGPFERKVRIAE---- 580
Query: 942 HQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E+M + D +CP CG ++FK+ R+G FI C+ P C
Sbjct: 581 ---EEMQKVDIQDEPAGE------NCPNCGR-PMVFKMGRYGK--FIACSGFPEC 623
>gi|390454081|ref|ZP_10239609.1| DNA topoisomerase I [Paenibacillus peoriae KCTC 3763]
Length = 700
Score = 454 bits (1169), Expect = e-124, Method: Compositional matrix adjust.
Identities = 267/678 (39%), Positives = 377/678 (55%), Gaps = 57/678 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES +KAK I YLG Y V S GH+RDL V ++DF+ + +
Sbjct: 4 SLVIVESPSKAKTIGKYLGSKYIVKASMGHIRDLPKSQIGVEVENDFNPKYITIRGKGSI 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A + + LA+DPDREGEAIAWH+ L+ D RVVF+EIT+ ++
Sbjct: 64 LKELKDARKKVKKVYLAADPDREGEAIAWHLAHALELDDTAD-----CRVVFNEITKQAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+I+ +LV A ARR LD L+G+ ISPLLW+K+ SAGRVQS A+ +I DR
Sbjct: 119 KDAFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIILDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI EF P+EYWT+ A L K+S TF H + K L+ S + +++ +
Sbjct: 179 ETEISEFVPEEYWTITAKLAIKDS----TFEAKFHKLRGEKKELS-----SEADVQEVLK 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I ++++V ++ +R P+ TS+LQQ+AA KLNF A+ TM +AQ+LYEGV L
Sbjct: 230 AIGKSSYKVQDVKEKERLRNPSPPFTTSSLQQEAARKLNFRASKTMSVAQQLYEGVDLGK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD I+ A +E + +I ++YG PE PR+Y KK NAQ+AHEAI
Sbjct: 290 EGTVGLITYMRTDSTRIAVSAQEEAKEIIIQKYGEDFVPE-SPRQYSKKSANAQDAHEAI 348
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + + D +LY L+W R MA QM A + + VDI A E+I FR++
Sbjct: 349 RPTSALRDPETVKPFMSRDQFRLYKLVWERFMASQMASAIMDTLSVDI-EAGETI-FRAA 406
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+V F GF Y E ++ + E +L L+ GD L VE KQH TQ
Sbjct: 407 GSKVRFPGFMKVY----------VEGNDDGKTEEDKLLPPLQPGDKLKKESVEPKQHFTQ 456
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEELGIGRPSTYA TL+ +Q R YV ++ + +P G +V +
Sbjct: 457 PPPRYTEARLVKTLEELGIGRPSTYAPTLETIQKRGYVAIEEKKFFPTELGELVIEQMEE 516
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSS------------------- 931
+F E+ + FTA+ME +LD+V G W +L D++ F
Sbjct: 517 FFPEILNVEFTANMEGDLDHVEEGEGNWVKVLSDFYESFEKRLEVAEEEMKEIEIKDEVS 576
Query: 932 --YCTCAQSLHIHQVEKMLEKTFGDSLFASLPN-----KD--RSCPVCGEGTLIFKVSRF 982
C S ++++ + K S F N KD +CP CG G ++ + S+
Sbjct: 577 DVICDKCGSPMVYKLGR-FGKFLACSAFPDCRNTKPIVKDIGITCPTCGVGHVVERRSKK 635
Query: 983 GAGYFIGCNQHPRCNYIA 1000
G F GC+++P C++++
Sbjct: 636 GR-VFYGCDRYPECDFVS 652
>gi|289550959|ref|YP_003471863.1| DNA topoisomerase I [Staphylococcus lugdunensis HKU09-01]
gi|418414260|ref|ZP_12987475.1| DNA topoisomerase 1 [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|289180491|gb|ADC87736.1| DNA topoisomerase I [Staphylococcus lugdunensis HKU09-01]
gi|410876867|gb|EKS24764.1| DNA topoisomerase 1 [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 689
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 259/646 (40%), Positives = 366/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V DD+F +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDVDDNFEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ +L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKKVFLASDPDREGEAIAWHLSNILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R+I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKHPRDIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E ++S F A H+++K + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYQKS------KFTAKFLHYKNK---PFKLQNKDDVNKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
K++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 KLDGDQFEITNVNKKEKTRNPAQPFTTSTLQQEAARKLNFKARKTMMIAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E +S I E YGS++ ++ K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISDAAKNEAKSYITENYGSNYVS----KRQAKGKQGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ D I FR++
Sbjct: 346 RPTSAMRTPNEMKSYLSRDQHRLYKLIWERFVASQMAPAILDTVALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++END+ L +LK GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKENDKENK---LPNLKEGDKVTATQIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV + S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLDSKRFVPTELGEIVYEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G +W+ ++ D+++ F L + + EK +EK
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDMKWRKVIDDFYNSF--------KLDVARAEKEMEK 565
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
A C VCG ++ K+ R+G F+ C+ P C
Sbjct: 566 IEIKDEPAG-----EDCEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|307720047|ref|YP_003891187.1| DNA topoisomerase I [Sulfurimonas autotrophica DSM 16294]
gi|306978140|gb|ADN08175.1| DNA topoisomerase I [Sulfurimonas autotrophica DSM 16294]
Length = 744
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/675 (38%), Positives = 390/675 (57%), Gaps = 58/675 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDL-AARSGSVRPDDDFSMV--WEVPSAA 407
++++VES KAK I+ +LG Y+V+ S GH+RDL +R G ++ +V + V
Sbjct: 2 NLIIVESPAKAKTIKNFLGKDYDVIASKGHIRDLPKSRFGITLDEETHELVPKYSVAKEN 61
Query: 408 WTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITE 467
+K IK A+ + +A+D DREGEAI WHI +++ + + + R+VFHEIT+
Sbjct: 62 APTVKEIKEKAKKADTIYIATDEDREGEAIGWHIAHAIKK-----DPLELPRIVFHEITK 116
Query: 468 ASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLI 527
+IK AL++AR+ID ++V A ARR LD ++G+ +SPLL K+ S GRVQS+ L L+
Sbjct: 117 TAIKHALESARKIDMDMVNAQQARRLLDRIVGYKLSPLLASKIQKGLSGGRVQSSTLKLV 176
Query: 528 CDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 587
DRE EI F PQEYW+++ V + A+L + K+L++LSI + +A+
Sbjct: 177 VDREREIKAFVPQEYWSIDTVFKT---------NIDANLIKHKDKKLSKLSIENKEQAET 227
Query: 588 IEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
I Q + + NF + K + P P++TSTLQQ A++KL F+ TM +AQ LYEGV+
Sbjct: 228 ITQSVKNDNFTIAKIETKQRKSSTPPPFMTSTLQQTASSKLGFTPKKTMMIAQTLYEGVK 287
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
PDGT+ G+ITYMRTD L+++ EA +R +I RYG + P+E P+ Y KK K AQEAH
Sbjct: 288 TPDGTS-GVITYMRTDSLNLAQEAVGAVRGIIENRYGKKYLPKE-PKIYTKKAKGAQEAH 345
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI-GNADESIV 766
EAIRPT ++ P + L D +KLY LI+ R MACQM+ A Q + GN +E
Sbjct: 346 EAIRPTMLQFTPEVAQSFLKADEIKLYRLIYERFMACQMEDAIFEQQSIIFKGNENE--- 402
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S ++ F GF A E+ D+ +L +LK G+ + V+ +Q
Sbjct: 403 FRASGRKLIFDGFYAV-----------TGTEDKDK-----LLPTLKEGEKAEIQSVKPEQ 446
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP+RYSE SL+KKLE G+GRPSTYA T+ L +R YVT++ + + P V+
Sbjct: 447 HFTEPPSRYSEASLIKKLEAEGVGRPSTYAPTIATLSNRTYVTIEKKQIIPTEIAFTVTE 506
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
L F + D +FTA+ME ELD ++ G +W+ LL++++ +F + Q+E+
Sbjct: 507 ILEKNFPNIVDINFTAEMEEELDEIAEGKVDWQKLLLEFYEKF-----------MKQIEE 555
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
E L L R+CP CGE L+ + RFG FI C+ P+C Y T D
Sbjct: 556 GKENIVSLKLAKPL---GRTCPKCGEHELLLRSGRFGN--FIACSGFPKCKY---TEQCD 607
Query: 1007 DDEEDTLQRNTNVDE 1021
++ ++ T DE
Sbjct: 608 EEGNAVEKKETTADE 622
>gi|315658461|ref|ZP_07911333.1| DNA topoisomerase TopA [Staphylococcus lugdunensis M23590]
gi|315496790|gb|EFU85113.1| DNA topoisomerase TopA [Staphylococcus lugdunensis M23590]
Length = 689
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 258/646 (39%), Positives = 366/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V DD+F +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDVDDNFEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ +L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKYAKKAKKVFLASDPDREGEAIAWHLSNILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R+I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKHPRDIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E ++S F A H+++K + + + +
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYQKS------KFTAKFLHYKNK---PFKLQNKDDVNKVTA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
K++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 KLDGDQFEITNVNKKEKTRNPAQPFTTSTLQQEAARKLNFKARKTMMIAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E +S I E YGS++ ++ K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISDAAKNEAKSYITENYGSNYVS----KRQAKGKQGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ D I FR++
Sbjct: 346 RPTSAMRTPNEMKSYLSRDQHRLYKLIWERFVASQMAPAILDTVALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++END+ L +LK GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKENDKENK---LPNLKEGDKVTATQIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV + S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLDSKRFVPTELGEIVYEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G +W+ ++ D+++ F L + + EK +EK
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDMKWRKVIDDFYNSF--------KLDVARAEKEMEK 565
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
A C VCG ++ K+ R+G F+ C+ P C
Sbjct: 566 IEIKDEPAG-----EDCEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|329929350|ref|ZP_08283103.1| DNA topoisomerase I [Paenibacillus sp. HGF5]
gi|328936719|gb|EGG33162.1| DNA topoisomerase I [Paenibacillus sp. HGF5]
Length = 699
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 274/680 (40%), Positives = 376/680 (55%), Gaps = 61/680 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES KAK I YLG Y V S GHVRDL V ++DF+ + +
Sbjct: 4 SLVIVESPAKAKTIGKYLGSKYIVKASMGHVRDLPKSQIGVEVENDFNPKYITIRGKGSV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A + + LA+DPDREGEAIAWH+ L+ D RVVF+EIT+ ++
Sbjct: 64 LKELKDASKKVKKVYLAADPDREGEAIAWHLAHALELDDTQS-----LRVVFNEITKTAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS A+ +I DR
Sbjct: 119 KDAFKTPRKINMDLVNAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVAVKIILDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F P+EYWT+ A L K S +F A T + + + E +I +
Sbjct: 179 ENEISAFVPEEYWTITAKLAIKGS------AFEAKFTQLNGAKKE---LTNEQEVNEILE 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I A+FQV + +R R P+ TS+LQQ+AA KL F A TM +AQ+LYEGV+L
Sbjct: 230 AIRDASFQVGEVKERERQRHPSPPFTTSSLQQEAARKLGFRAAKTMSVAQQLYEGVELGK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A +E + I E+YG PE PR+Y KK NAQ+AHEAI
Sbjct: 290 EGTVGLITYMRTDSTRISGTAQEEAKEYITEKYGDPFVPE-SPRQYSKKAANAQDAHEAI 348
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPT + R P + + D L+LY LIW R +A QM A + + VDI GN VFR
Sbjct: 349 RPTSVLRDPESMKPFMSRDQLRLYKLIWERFVASQMSSAVLDTLSVDITAGNT----VFR 404
Query: 769 SSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V F GF Y E D G E D++ L L +GD L ++E KQH
Sbjct: 405 ATGSKVRFPGFMKVYVEGNDDGTT------EEDKY-----LPELHSGDILEKQDIEPKQH 453
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RY+E LV+ LEELGIGRPSTYA TL+ +Q R YV ++ + P G +V
Sbjct: 454 FTQPPPRYTEARLVRTLEELGIGRPSTYAPTLETIQKRGYVAIEEKKFMPTELGELVIEQ 513
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV--- 944
+ +F E+ + FTA+ME +LD+V G +W +L +++ F A+
Sbjct: 514 MEQFFPEILNVEFTANMEEDLDHVEEGSEDWVKVLAEFYESFEKRLEVAEEEMKEIEIED 573
Query: 945 ---EKMLEKT----------FGDSLFAS-LPN--------KD--RSCPVCGEGTLIFKVS 980
+++ EK FG L S P+ KD SCP C EG ++ + S
Sbjct: 574 EVSDEICEKCGKPLVYKLGRFGKFLACSGFPDCRNTKPIVKDIGVSCPKCKEGHVVERRS 633
Query: 981 RFGAGYFIGCNQHPRCNYIA 1000
+ G +F GC+++P C++++
Sbjct: 634 KKGRVFF-GCDRYPECDFVS 652
>gi|442804839|ref|YP_007372988.1| DNA topoisomerase 1 [Clostridium stercorarium subsp. stercorarium
DSM 8532]
gi|442740689|gb|AGC68378.1| DNA topoisomerase 1 [Clostridium stercorarium subsp. stercorarium
DSM 8532]
Length = 710
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 275/682 (40%), Positives = 378/682 (55%), Gaps = 62/682 (9%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K +V+VES KAK I+ +LG Y++ S GHVRDL V + F +
Sbjct: 2 AKYLVIVESPAKAKTIKKFLGSNYKIKASMGHVRDLPKSHMGVDIEHGFEPKYINIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+ +K +E + LA+DPDREGEAI+WH+ + Q + N R+ F+EIT+
Sbjct: 62 DLITELKKEAKESERVFLATDPDREGEAISWHLANIFQ----IDSN-EKCRITFNEITKN 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ ALQA R ID NLV A ARR LD ++G+ ISPLLW+K+ SAGRVQSAA+ +IC
Sbjct: 117 AVLKALQAPRPIDMNLVNAQQARRVLDRIVGYKISPLLWKKVKKGLSAGRVQSAAIKIIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI+ F P+EYWT+E +L K+ D +F A + ++++ + + + I
Sbjct: 177 DREREIENFIPEEYWTIETLLSKE-----DGRTFTAKFSGLVNEKI---ELKTREDVDRI 228
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
I + F I+N KRS ++ P+P +ITSTLQQDAA K FSA TM LAQ+LYEGV+
Sbjct: 229 LGNIENKEF-TIRNIKRSEKKRTPSPPFITSTLQQDAARKFGFSAKKTMMLAQQLYEGVE 287
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ + GLITYMRTD ISDEA R I + YG + PE+ PR FK AQ+AH
Sbjct: 288 IEGEGSVGLITYMRTDSTRISDEALNAAREYILKNYGEKYLPEK-PR-VFKAKSGAQDAH 345
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT + P + L D +LY LIW R +A QM+ A + V+I D +F
Sbjct: 346 EAIRPTLLEFTPERVKDSLSRDLYRLYKLIWDRFIASQMESALYDTMSVEITCGD--YLF 403
Query: 768 RSSCSRVEFLGFQAAYE---DVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVEL 824
++S SR+ F GF YE D D G EE+D E +L L G+ + E++
Sbjct: 404 KASGSRIAFKGFLVLYEEGKDDDNG-------EESD--ETGILLPELTEGEVVKPVEIKP 454
Query: 825 KQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMV 884
QH TQPP RY+E +LVK LEE GIGRPSTYA + + R YV + + LYP G++V
Sbjct: 455 AQHFTQPPPRYTEATLVKTLEEKGIGRPSTYAPIISTIMSRGYVVKEKKYLYPTELGKIV 514
Query: 885 SAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV 944
++ + +F E+ D +FTA MET+LD V G EWK LL +++S FS A+ I++V
Sbjct: 515 NSLMEEHFKEIVDVNFTAKMETQLDLVEEGKLEWKNLLNEFYSEFSKTLKAAEE-SINKV 573
Query: 945 E---------------KMLEKTFGDSLFASLP-------------NKDRSCPVCGEGTLI 976
E +M+ KT F + P + CP CG LI
Sbjct: 574 ELPVEESDEICEKCGRRMVIKTGKYGKFLACPGFPECRNAKPLFDDAGVKCPKCGGKVLI 633
Query: 977 FKVSRFGAGYFIGCNQHPRCNY 998
K R G Y +GC +P C++
Sbjct: 634 KKTKR-GKSY-LGCENYPECDF 653
>gi|221633579|ref|YP_002522805.1| DNA topoisomerase I [Thermomicrobium roseum DSM 5159]
gi|221156829|gb|ACM05956.1| DNA topoisomerase I [Thermomicrobium roseum DSM 5159]
Length = 744
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 268/693 (38%), Positives = 377/693 (54%), Gaps = 68/693 (9%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+++V+VES KA+ I +LG Y V S GHVRDL V +F + V
Sbjct: 34 GQALVIVESPAKARTIARFLGPGYTVKASMGHVRDLPKSKLGVDVAQNFQPTYTVLKEKL 93
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+K ++ ++ A LILA+DPDREGEAIAWH++E + D V R+VFHEITE
Sbjct: 94 PVVKELQESVQRARELILATDPDREGEAIAWHLIEATRAHDK-----PVRRIVFHEITEE 148
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I+ AL R ID LV A ARR LD L+G+ ISPLLWRK+ SAGRVQS AL L+
Sbjct: 149 AIREALAHPRGIDMRLVNAQQARRVLDRLVGYEISPLLWRKVKSGLSAGRVQSVALRLVV 208
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI F PQEYWT+E L + + + F A L + ++ + + + A+ +
Sbjct: 209 DREREIQAFVPQEYWTIEVDLVPTGNGAQEPVPFAAALVRVRGEKPD---LPNEEAARAV 265
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ ++ + V+ +R R+ P+ITSTLQQ+A KL F + TM+LAQ+LYEGV+L
Sbjct: 266 ARELEASQYWVVSIKERQKQRRPAPPFITSTLQQEAGRKLRFPVSLTMQLAQQLYEGVEL 325
Query: 649 -PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
P+G+ GLITYMRTD ++ A + R +I R+G+ PE P Y KK K AQEAH
Sbjct: 326 GPEGSV-GLITYMRTDSTQVAASAQQRAREVIAARWGADFLPERPP-VYAKKAKGAQEAH 383
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG-----NAD 762
EAIRPTD R P + L +LY LIW R +A QM PA + V+I AD
Sbjct: 384 EAIRPTDPARDPESVRPYLTPRQYQLYRLIWERFIASQMAPAIYDTVTVEIAAGPTVGAD 443
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
+ R++ S V F GF Y + + ++ L L TG+ L L V
Sbjct: 444 APYLLRATGSVVRFPGFLVVYREERDEDEVDELDQRP--------LPPLATGEVLRLLAV 495
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
+QH TQPP RYSE +LVK LEELGIGRPSTYA T++ L+ R YV V+ R L P G
Sbjct: 496 RPEQHFTQPPPRYSEATLVKTLEELGIGRPSTYAPTIETLKQRRYVVVEDRKLVPTELGM 555
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ L +F +V D FT+ +E ELD ++AG +W ++ +++ F +
Sbjct: 556 LVTDLLVQHFPDVVDVGFTSRLEEELDEIAAGERDWVPVVREFYEPFHR--------QVE 607
Query: 943 QVEKMLEKT------------------------FGDSL----FASLPNK-------DRSC 967
+ E+ +E+ FG L F NK C
Sbjct: 608 EAEQTMERVRLADQPSGEVCELCGRPMVIKESRFGRFLSCSGFPECKNKRPLLEKIGVRC 667
Query: 968 PVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
P CGEG ++ + SR G ++ GC+++P C++++
Sbjct: 668 PQCGEGEIVVRRSRKGRTFY-GCSRYPDCDFVS 699
>gi|270308040|ref|YP_003330098.1| topoisomerase IA [Dehalococcoides sp. VS]
gi|270153932|gb|ACZ61770.1| topoisomerase IA [Dehalococcoides sp. VS]
Length = 703
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 259/655 (39%), Positives = 376/655 (57%), Gaps = 46/655 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KA+ I LG + ++ + GH+RDL + V ++ F+ + A +
Sbjct: 5 LVIVESPAKARTISKMLGKDFNIMATMGHIRDLPKSTLGVDVENSFTPKYVSLKAKAKVI 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A+ ++ + LA+DPDREGEAIAWHI E+ + A + RVVFHEIT+ +I
Sbjct: 65 KELKEAVKNSKAIYLATDPDREGEAIAWHISEVTKANLAKPK-----RVVFHEITKEAID 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A + RE+D +LV A ARR LD L+G+ +SPLLWRK+ SAGRVQS +L +I DRE
Sbjct: 120 KAFKNTRELDMDLVNAQQARRVLDRLVGYKLSPLLWRKVQRGLSAGRVQSVSLKIIVDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++F EYW +EA+L+KK + + +F A L + +K +L I + +EA+ I+++
Sbjct: 180 REIEKFVSAEYWNIEALLNKK----VKSAAFKASLAGYVTK--GKLEIHNESEAEQIKKE 233
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ A++QV+K K+S +R++P P+ITSTLQQ+A KL+FSA TM +AQ+LYEG+ +
Sbjct: 234 LEVADYQVLKIKKKSNLRQSPAPFITSTLQQEAWRKLHFSAKQTMVIAQQLYEGLNIEGE 293
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD +++ A E R I E+YG + P++ R + KVK AQEAHEAIR
Sbjct: 294 GEVGLITYMRTDSTNVARTAVAETRDYISEKYGPAYLPKQA-RVFSSKVKGAQEAHEAIR 352
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES----IVF 767
PT I R P ++ L + KLY LIW R MA QM PA +DI + +
Sbjct: 353 PTRITRTPDLIKKSLSAEQFKLYQLIWQRMMASQMSPAAFDNTTIDIEAKHQPSKTRYLL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S F GF I Y E ++ D A + L S++ G+ L L +E QH
Sbjct: 413 RTTSSVNTFPGF----------TIVYIEGKDEDEEAAQSSLPSMEEGEELKLKNLEASQH 462
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RY+E +L+K LE+ GIGRPSTYA T+ +Q+R Y+T L P G +V+
Sbjct: 463 FTQPPPRYTEATLIKALEQYGIGRPSTYAPTISTIQEREYITKLKGSLKPSELGMLVNDL 522
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L YF ++ FTA METELD ++ +W ++ ++ F I ++E
Sbjct: 523 LVEYFPDIIGIDFTAAMETELDKIATEKLDWVPIIRRFYEPF-----------IKEIEAA 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPR----CNY 998
EK + + D CP C L+ K RFG FI C+++ + C Y
Sbjct: 572 SEKI--EKIKPPEEELDELCPECN-AKLVVKRGRFGK--FIACSRYTKEEGGCRY 621
>gi|354581587|ref|ZP_09000491.1| DNA topoisomerase I [Paenibacillus lactis 154]
gi|353201915|gb|EHB67368.1| DNA topoisomerase I [Paenibacillus lactis 154]
Length = 699
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 275/678 (40%), Positives = 379/678 (55%), Gaps = 57/678 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES KAK I YLG Y V S GHVRDL V ++DF+ + +
Sbjct: 4 SLVIVESPAKAKTIGKYLGSKYIVKASMGHVRDLPKSQIGVEVENDFNPKYITIRGKGSV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A + + LA+DPDREGEAIAWH+ L+ L E+ ++ RVVF+EIT+ ++
Sbjct: 64 LKELKDASKKVKKVYLAADPDREGEAIAWHLAHALE----LDESQSL-RVVFNEITKTAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+I+ +LV A ARR LD L+G+ ISPLLW+K+ SAGRVQS A+ +I DR
Sbjct: 119 KDAFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIILDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F P+EYWT+ A L K S SF A T ++ +LS S + ++
Sbjct: 179 ENEISAFVPEEYWTITAKLAVKGS------SFEAKFTQLNGEK-KELS--SQEDVNEVLA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I A+F V + +R R P+ TS+LQQ+AA KL F A TM +AQ+LYEGV+L
Sbjct: 230 AIKDASFTVGEVKERERQRHPSPPFTTSSLQQEAARKLGFRAAKTMSVAQQLYEGVELGK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A E + I E+YG PE PR+Y KK NAQ+AHEAI
Sbjct: 290 EGTVGLITYMRTDSTRISGTAQDEAKEYITEKYGEPFVPE-SPRQYSKKAANAQDAHEAI 348
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT + R P + + D L+LY LIW R +A QM A + + VDI + VFR++
Sbjct: 349 RPTSVLRDPESVKPYMSRDQLRLYKLIWERFVASQMASAVLDTLSVDISAG--TAVFRAT 406
Query: 771 CSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S+V F GF Y E D G E D++ L L TGD L ++E KQH T
Sbjct: 407 GSKVRFPGFMKVYVEGNDDGTT------EEDKY-----LPELHTGDQLDKQDIEPKQHFT 455
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LV+ LEELGIGRPSTYA TL+ +Q R YV ++ + P G +V +
Sbjct: 456 QPPPRYTEARLVRTLEELGIGRPSTYAPTLETIQKRGYVAIEDKKFVPTELGELVIEQME 515
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV----- 944
+F E+ + FTA+ME +LD+V G +W +L +++ F A+
Sbjct: 516 QFFPEILNVEFTANMEEDLDHVEEGSEDWVKVLSEFYKSFEKRLEVAEEEMKEIEIEDEV 575
Query: 945 -EKMLEKT----------FGDSLFAS-LPN--------KD--RSCPVCGEGTLIFKVSRF 982
+++ EK FG L S P+ KD +CP C EG ++ + S+
Sbjct: 576 SDEICEKCGKPLVYKLGRFGKFLACSGFPDCRNTKPIVKDIGVTCPKCKEGHVVERRSKK 635
Query: 983 GAGYFIGCNQHPRCNYIA 1000
G +F GC+++P C++++
Sbjct: 636 GRIFF-GCDRYPECDFVS 652
>gi|385784586|ref|YP_005760759.1| DNA topoisomerase I [Staphylococcus lugdunensis N920143]
gi|339894842|emb|CCB54138.1| DNA topoisomerase I [Staphylococcus lugdunensis N920143]
Length = 685
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 258/646 (39%), Positives = 364/646 (56%), Gaps = 50/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V DD+F +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDVDDNFEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ +L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKKVFLASDPDREGEAIAWHLSNILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R+I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKHPRDIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E ++S F A H+++K + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYQKS------KFTAKFLHYKNK---PFKLQNKDDVNKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
K++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 KLDGDQFEITNVNKKEKTRNPAQPFTTSTLQQEAARKLNFKARKTMMIAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E +S I E YGS++ ++ K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISDAAKNEAKSYITENYGSNYVS----KRQAKGKQGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ D I FR++
Sbjct: 346 RPTSAMRTPNEMKSYLSRDQHRLYKLIWERFVASQMAPAILDTVALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++EN L +LK GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKENK-------LPNLKEGDKVTATQIEPAQHFTQ 449
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV + S+ P G +V +
Sbjct: 450 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLDSKRFVPTELGEIVYEQVKE 509
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G +W+ ++ D+++ F L + + EK +EK
Sbjct: 510 YFPEIIDVEFTVNMETLLDKIAEGDMKWRKVIDDFYNSF--------KLDVARAEKEMEK 561
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
A C VCG ++ K+ R+G F+ C+ P C
Sbjct: 562 IEIKDEPAG-----EDCEVCG-SPMVIKMGRYGK--FMACSNFPDC 599
>gi|261407991|ref|YP_003244232.1| DNA topoisomerase I [Paenibacillus sp. Y412MC10]
gi|261284454|gb|ACX66425.1| DNA topoisomerase I [Paenibacillus sp. Y412MC10]
Length = 699
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 272/680 (40%), Positives = 375/680 (55%), Gaps = 61/680 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES KAK I YLG Y V S GHVRDL V ++DF+ + +
Sbjct: 4 SLVIVESPAKAKTIGKYLGSKYIVKASMGHVRDLPKSQIGVEVENDFNPKYITIRGKGSV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A + + LA+DPDREGEAIAWH+ L+ D RVVF+EIT+ ++
Sbjct: 64 LKELKDASKKVKKVYLAADPDREGEAIAWHLAHALELDDTQS-----LRVVFNEITKTAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS A+ +I DR
Sbjct: 119 KDAFKTPRKINMDLVNAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVAVKIILDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F P+EYWT+ A L K S +F A T + + + E +I +
Sbjct: 179 ENEISAFVPEEYWTITAKLAIKGS------AFEAKFTQLNGAKKE---LTNEQEVNEILE 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I A+F+V + +R R P+ TS+LQQ+AA KL F A TM +AQ+LYEGV+L
Sbjct: 230 AIRDASFKVGEVKERERQRHPSPPFTTSSLQQEAARKLGFRAAKTMSVAQQLYEGVELGK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A +E + I E+YG PE PR+Y KK NAQ+AHEAI
Sbjct: 290 EGTVGLITYMRTDSTRISGTAQEEAKEYITEKYGDPFVPE-SPRQYSKKAANAQDAHEAI 348
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPT + R P + + D L+LY L+W R +A QM A + + VDI GN VFR
Sbjct: 349 RPTSVLRDPESMKPYMSRDQLRLYKLVWERFVASQMSSAVLDTLSVDITAGNT----VFR 404
Query: 769 SSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V F GF Y E D G E D++ L L +GD L ++E KQH
Sbjct: 405 ATGSKVRFPGFMKVYVEGNDDGTT------EEDKY-----LPELHSGDILEKQDIEPKQH 453
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RY+E LV+ LEELGIGRPSTYA TL+ +Q R YV ++ + P G +V
Sbjct: 454 FTQPPPRYTEARLVRTLEELGIGRPSTYAPTLETIQKRGYVAIEEKKFMPTELGELVIEQ 513
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV--- 944
+ +F E+ + FTA+ME +LD+V G +W +L +++ F A+
Sbjct: 514 MEQFFPEILNVEFTANMEEDLDHVEEGSEDWVKVLAEFYESFEKRLEVAEEEMKEIEIED 573
Query: 945 ---EKMLEKT----------FGDSLFAS-LPN--------KD--RSCPVCGEGTLIFKVS 980
+++ EK FG L S P KD SCP C EG ++ + S
Sbjct: 574 EVSDEICEKCGKPLVYKLGRFGKFLACSGFPECRNTKPIVKDIGVSCPKCKEGHVVERRS 633
Query: 981 RFGAGYFIGCNQHPRCNYIA 1000
+ G +F GC+++P C++++
Sbjct: 634 KKGRVFF-GCDRYPECDFVS 652
>gi|219848257|ref|YP_002462690.1| DNA topoisomerase I [Chloroflexus aggregans DSM 9485]
gi|219542516|gb|ACL24254.1| DNA topoisomerase I [Chloroflexus aggregans DSM 9485]
Length = 780
Score = 448 bits (1152), Expect = e-122, Method: Compositional matrix adjust.
Identities = 271/654 (41%), Positives = 378/654 (57%), Gaps = 39/654 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ VV+VES KA+ IQ YLG Y+V S GHVRDL ++ + DF+ +E+
Sbjct: 2 GEKVVIVESPAKARTIQKYLGKGYKVTSSMGHVRDLPKNGLAIDIEHDFAPSYEI--VKP 59
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+ + A+ A+ + LA+DPDREGEAIAWHI + ++ + + RVVF EIT
Sbjct: 60 KVVSELNQAVRNADAIYLATDPDREGEAIAWHITQAVKT----PKKTPIYRVVFQEITRN 115
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+++ ALQ R+I+ NLV A ARR LD L+G+ +SPLLW K+ SAGRVQS A+ LI
Sbjct: 116 AVQQALQQPRQINQNLVDAQQARRVLDRLVGYQLSPLLWDKVKRGLSAGRVQSVAVRLIV 175
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE EI+ FKPQEYWT+EA L KE+ F A L K+L + SI +A+ I
Sbjct: 176 EREREIENFKPQEYWTIEADL-LKEAGIAPRDLFRATLIERDGKKLEKFSIERREQAEAI 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ A + V+K ++R R P P+ TSTLQQ+AA KL FSA TM LAQ+LYEGV +
Sbjct: 235 VADLQGAAYTVLKVTRRDKRRSPPPPFTTSTLQQEAARKLGFSAKKTMMLAQRLYEGVDI 294
Query: 649 P-DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GLITYMRTD + ++ EA E R +I R+G + P++ P Y K K AQEAH
Sbjct: 295 GGEEGMVGLITYMRTDSVQVAAEAQAEAREVIDRRFGREYLPDQPP-VYKIKAKGAQEAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI-- 765
EAIRPT R P LS L+ D +LY LIW R +A QM PA VDI A S+
Sbjct: 354 EAIRPTSSARTPEQLSERLERDLWRLYDLIWKRFIASQMAPAIFDSTTVDIA-AQPSVAG 412
Query: 766 ----VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGE 821
+FR++ S ++F GF A Y + +E+E+++R L L G+ L L E
Sbjct: 413 APPYLFRATGSVLKFPGFLAVY---NVSLDEGEEDEDSERR-----LPPLVEGENLQLVE 464
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRG 881
+ QH T+PP RY+E SLVK+LE LGIGRPSTYA+ L +Q+R YV + + L P G
Sbjct: 465 LLPVQHFTEPPPRYTEASLVKELERLGIGRPSTYATILSTIQEREYVEMVDKKLIPTMLG 524
Query: 882 RMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI 941
R+V+ L +F + DY FT+ +E +LD+++ G +W +L +++ F S AQ
Sbjct: 525 RIVTDLLVEHFGNIVDYDFTSSLEQQLDDIAEGSKQWVPVLREFYGPFRSTLETAQ---- 580
Query: 942 HQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPR 995
+ + + + L CP CG+G L+ K R G F+ C+++ R
Sbjct: 581 ----RQMRNVKREEIITDL-----DCPKCGKGKLVIKFGR--NGEFLACSRYNR 623
Score = 46.6 bits (109), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 966 SCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
+CP CGEG L+ + +FG ++ GC+++P+C+YI +L
Sbjct: 707 TCPKCGEGELLRRRGKFGRPFY-GCSRYPKCDYITNSL 743
>gi|381182606|ref|ZP_09891403.1| DNA topoisomerase I [Listeriaceae bacterium TTU M1-001]
gi|380317495|gb|EIA20817.1| DNA topoisomerase I [Listeriaceae bacterium TTU M1-001]
Length = 692
Score = 447 bits (1151), Expect = e-122, Method: Compositional matrix adjust.
Identities = 261/650 (40%), Positives = 371/650 (57%), Gaps = 54/650 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++V S GHVRDL V + DF + L
Sbjct: 5 LVIVESPAKAKTIEKYLGKKFQVKASMGHVRDLPKSQMGVDVEHDFEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ--QQDALHENITVARVVFHEITEAS 469
K +K A A+ + LA+DPDREGEAIAWH+ L+ Q D L RVVF+EIT+ +
Sbjct: 65 KELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQSDDL-------RVVFNEITKEA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K + + R+ID +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL LI D
Sbjct: 118 VKESFKNPRKIDMDLVDAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSVALRLIID 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FKP+EYWT++ K + SF A+ K+ + + + K++
Sbjct: 178 REKEINNFKPEEYWTIDGNFKKGKK------SFQANFYGLNGKKK---KLSNADDVKEVM 228
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I F VI +K+ +R P+ TS+LQQ+AA KLNF TM LAQ+LYEG+ L
Sbjct: 229 AQIKGKTFDVIDVTKKERLRNPAAPFTTSSLQQEAARKLNFRTRKTMMLAQQLYEGIPLG 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEA 706
GLITYMRTD ISD A E + I E YG+ A R + +K KN +Q+A
Sbjct: 289 RQGTVGLITYMRTDSTRISDTATAESNTFIKENYGNEFA-----RNHKRKDKNQKGSQDA 343
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT + R P + L D L+LY LIW R +A QM PA + ++VD+ N +
Sbjct: 344 HEAIRPTSVLRTPQDMKEYLSRDQLRLYKLIWERFVASQMTPAVLDTMRVDLNN--NGVT 401
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ S+V+F GF Y E+ ++++ E IL L+ GD + +E +Q
Sbjct: 402 FRANGSKVKFAGFMKVY----------VESNDDNKEEKENILPDLEKGDKVNYETLEQRQ 451
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RY+E LVK LEE+GIGRPSTY+ TL +Q RNYV++ ++ P G +V+
Sbjct: 452 HFTQPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFMPTELGEIVNE 511
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ YF E+ D SFTA+ME+ELD V G +W ++ +++ F ++ + +K
Sbjct: 512 LIEEYFPEILDVSFTANMESELDEVEHGQMKWVRVIDEFYKSFEP--------NVERADK 563
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+EK A + C VCG +++K+ ++G F+ C++ P C
Sbjct: 564 EMEKIEIKDEPAGI-----DCDVCG-APMVYKMGKYGK--FLACSRFPDC 605
>gi|15615030|ref|NP_243333.1| DNA topoisomerase I [Bacillus halodurans C-125]
gi|11135320|sp|Q9KA23.1|TOP1_BACHD RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase I;
AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName: Full=Untwisting
enzyme
gi|10175087|dbj|BAB06186.1| DNA topoisomerase I [Bacillus halodurans C-125]
Length = 690
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 262/678 (38%), Positives = 372/678 (54%), Gaps = 60/678 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG Y V S GHVRDL V +D++S + L
Sbjct: 5 LVIVESPAKAKTIGKYLGKKYTVKASMGHVRDLPKSQMGVDIEDEYSPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A + + LA+DPDREGEAIAWH+ L + + RVVF+EIT+ +IK
Sbjct: 65 KELKSAAKKVKRVYLAADPDREGEAIAWHLAHSLD-----IDETSECRVVFNEITKQAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A ++ R I+ +LV A ARR LD L+G+NISPLLW+K+ SAGRVQS A+ +I DRE
Sbjct: 120 DAFKSPRPINMDLVDAQQARRVLDRLVGYNISPLLWKKVKKGLSAGRVQSVAVKMIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI F+P+EYW+++ + +LD F A K++ + S + ++ K
Sbjct: 180 KEIQAFEPEEYWSIQG------TFALDGEPFEAKFYGTNGKKVE---LKSEDDVNNVLAK 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ F V K+ R +P+ TS+LQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 231 LKGDQFHVDSVQKKERKRNPVSPFTTSSLQQEAARKLNFRAKKTMMLAQQLYEGIDLGKE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD ISD A E + I ++G +A + K KK K +Q+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISDTAKAETKEYIESKFGKEYA--QNGTKAVKKDKKSQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R P L L D L+LY LIW R +A QM PA + + VD+ N E ++FR++
Sbjct: 349 PTSVERDPKSLKEYLSRDQLRLYKLIWERLVASQMAPAIMDTMTVDLSN--EGVLFRATG 406
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+V+F GF Y E D G +E DR +L +L+ G + E+E QH TQ
Sbjct: 407 SKVKFPGFMKVYIEGNDEG------KKEEDR-----LLPNLQEGQTVTKEEIEPSQHFTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK +EELGIGRPSTYA TL +Q R YV + R P G +V ++
Sbjct: 456 PPPRYTEARLVKTMEELGIGRPSTYAPTLDTIQKRGYVALDERRFVPTELGEIVLELMTE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE----- 945
+F E+ D FTA ME +LD++ G +W ++ D++ F A+ + +VE
Sbjct: 516 FFPEILDVEFTAKMEDDLDSIEEGKQQWIKIIDDFYKGFEERLKVAEE-EMKEVEIKDEP 574
Query: 946 --KMLEKTFGDSLF-----------ASLPNKDRS----------CPVCGEGTLIFKVSRF 982
+M EK + ++ ++ P+ + CP C +G ++ + S+
Sbjct: 575 TGEMCEKCGHEMVYKMGRYGKFMACSNFPDCRNTKPIVKEIGVKCPKCEKGEIVERKSK- 633
Query: 983 GAGYFIGCNQHPRCNYIA 1000
F GCNQ+P C++++
Sbjct: 634 KRRVFYGCNQYPECDFVS 651
>gi|57234467|ref|YP_181458.1| DNA topoisomerase I [Dehalococcoides ethenogenes 195]
gi|57224915|gb|AAW39972.1| DNA topoisomerase I [Dehalococcoides ethenogenes 195]
Length = 703
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 257/655 (39%), Positives = 375/655 (57%), Gaps = 46/655 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KA+ I LG + ++ + GH+RDL + V ++ F+ + A +
Sbjct: 5 LVIVESPAKARTISKMLGKDFNIMATMGHIRDLPKSTLGVDVENSFTPKYVSLKAKAKVI 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A+ ++ + LA+DPDREGEAIAWHI E+ + A + RVVFHEIT+ +I
Sbjct: 65 KELKDAVKNSKAIYLATDPDREGEAIAWHISEVTKANLAKPK-----RVVFHEITKEAID 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A + RE+D +LV A ARR LD L+G+ +SPLLWRK+ SAGRVQS +L +I DRE
Sbjct: 120 KAFKNTRELDMDLVNAQQARRVLDRLVGYKLSPLLWRKVQRGLSAGRVQSVSLKIIVDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++F EYW +EA+L+KK + + +F A L + +K +L I + +EA+ I+++
Sbjct: 180 REIEKFVSAEYWNIEALLNKK----VKSAAFKASLAGYVTK--GKLEIHNESEAEQIKKE 233
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ +++QV+K K+S +R++P P+ITSTLQQ+A KL+FSA TM +AQ+LYEG+ +
Sbjct: 234 LEVSDYQVLKIKKKSNLRQSPAPFITSTLQQEAWRKLHFSAKQTMVIAQQLYEGLNIEGE 293
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD +++ A E R I E+YG + P++ R + KVK AQEAHEAIR
Sbjct: 294 GEVGLITYMRTDSTNVARTAVAETRDYISEKYGPAYLPKQA-RVFSSKVKGAQEAHEAIR 352
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES----IVF 767
PT I R P ++ L + KLY LIW R MA QM PA +DI + +
Sbjct: 353 PTRIIRTPDLIKKSLSTEQFKLYQLIWQRMMASQMSPAVFDNTTIDIEAKHQPSKTRYLL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S F GF I Y E ++ D A + L ++ G+ L L +E QH
Sbjct: 413 RTTSSVNTFPGF----------TIVYIEGKDEDEEAAQSSLPPMEEGEELKLKSLEASQH 462
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RY+E +L+K LE+ GIGRPSTYA T+ +Q+R Y+T L P G +V+
Sbjct: 463 FTQPPPRYTEATLIKALEQYGIGRPSTYAPTISTIQEREYITKLKGSLKPSELGMLVNDL 522
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L YF ++ FTA METELD ++ +W ++ ++ F I ++E
Sbjct: 523 LVEYFPDIIGIDFTAAMETELDKIATEKLDWVPIIRRFYEPF-----------IKEIEAA 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPR----CNY 998
EK + + D CP C L+ K RFG FI C+++ + C Y
Sbjct: 572 SEKI--EKIKPPEEELDELCPECN-AKLVVKRGRFGK--FIACSRYTKEEGGCRY 621
>gi|418312584|ref|ZP_12924093.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21334]
gi|365238229|gb|EHM79066.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21334]
Length = 689
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 364/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKS------KFNAKFLHYKNK---PFKLKTKKDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
+++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQKIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|417802638|ref|ZP_12449695.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21318]
gi|334274274|gb|EGL92596.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21318]
Length = 689
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 256/646 (39%), Positives = 364/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E L K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGELRYKKSK------FNAKFLHYKNK---PFKLKTKKDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|334136702|ref|ZP_08510160.1| DNA topoisomerase I [Paenibacillus sp. HGF7]
gi|333605776|gb|EGL17132.1| DNA topoisomerase I [Paenibacillus sp. HGF7]
Length = 698
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 263/649 (40%), Positives = 359/649 (55%), Gaps = 49/649 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES KAK I YLG Y V S GH+RDL V + DF + +
Sbjct: 4 SLVIVESPAKAKTIGKYLGSKYIVKASMGHIRDLPKSQIGVEVERDFEPKYITIRGKGSV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A + + LA+DPDREGEAIAWH+ L+ D + RVVF+EIT+ ++
Sbjct: 64 LKELKDASKKVKKVYLAADPDREGEAIAWHLAHYLELNDTDN-----CRVVFNEITKQAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R I+ +LV A ARR LD L+G+ ISPLLW+K+ SAGRVQS A+ LI DR
Sbjct: 119 KDAFKTPRPINIDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKLIMDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F P+EYWT+ A+L+ ++H F A + +GS E + + +
Sbjct: 179 ENEIKAFVPEEYWTITAMLEAGKAH------FEAKFYGMDGAKKE---LGSEEEVQAVLK 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I A F ++K K +NP+P +ITS+LQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 AIEGAPF-IVKEVKEKERLRNPSPPFITSSLQQEAARKLNFRAAKTMSVAQQLYEGIDLG 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD IS A +E + I +YG PE PR Y KK N Q+AHE
Sbjct: 289 KEGTVGLITYMRTDSTRISPVAQEEAKEYILGKYGESFYPE-TPRVYTKKGSNTQDAHEG 347
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVD--IGNADESIVF 767
IRP+ + R P + L D +LY L+W R +A QM A + + +D +GN VF
Sbjct: 348 IRPSSVTRDPDSVKEFLSRDQFRLYKLVWERFVASQMSSAVLDTMTIDLNVGNT----VF 403
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+ S+++F GF Y E ++ E +L LK+GD + E++ KQH
Sbjct: 404 RAVGSKLKFPGFMKVY----------VEGNDDGTTEEDKLLPPLKSGDQVVSDEIQPKQH 453
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RY+E LV+ LEELGIGRPSTYA TL+ +Q R YV ++ + P G +V
Sbjct: 454 FTQPPPRYTEARLVRALEELGIGRPSTYAPTLETIQKRGYVAIEEKKFVPTELGELVIQL 513
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+S +F E+ D FTA ME ELD+V G W +L +++S F A+ E+M
Sbjct: 514 MSEFFPEILDVEFTAQMEEELDHVGEGKENWVKVLDEFYSSFEKRLEFAE-------EEM 566
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E D + D C CG+ L++K+ RFG F+ C+ P C
Sbjct: 567 KEIEIQDEV------SDEICEKCGK-HLVYKMGRFGK--FLACSGFPDC 606
>gi|222151083|ref|YP_002560237.1| DNA topoisomerase I [Macrococcus caseolyticus JCSC5402]
gi|222120206|dbj|BAH17541.1| DNA topoisomerase I [Macrococcus caseolyticus JCSC5402]
Length = 687
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 256/654 (39%), Positives = 363/654 (55%), Gaps = 59/654 (9%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
+++V+VES KAK I+ YLG ++V+ S GHVRDL V ++DF +
Sbjct: 2 AENLVIVESPAKAKTIEKYLGKKFKVVASMGHVRDLPRSQMGVDTENDFEPRYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
++ +K A+++ LASDPDREGEAIAWH+ +L + +RVVF+EIT+
Sbjct: 62 PIVQDLKKHAKRAKHVYLASDPDREGEAIAWHLAHILNIDEK-----AASRVVFNEITKD 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K + + R+I+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL LI
Sbjct: 117 AVKESFKHPRQIEQNLVDAQQARRVLDRLVGYNISPVLWKKVKKGLSAGRVQSVALKLII 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSK--RLNQLSIGSHTEAK 586
DRE EI+ FKP+EYWT++ + + D F A H +K +L Q + K
Sbjct: 177 DREEEINAFKPEEYWTIDGLFE------YDRKQFKAKFLHENNKPKKLKQ-----EDDVK 225
Query: 587 DIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
I +++ S F+V +K+ +R P+ TS+LQQ+AA KLNF A TM LAQ+LYEG+
Sbjct: 226 AIVKQLKSDAFEVTDVTKKEKLRNPAQPFTTSSLQQEAARKLNFKARKTMMLAQQLYEGI 285
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L A GLITYMRTD ISD A E S I E YG + K K AQ+A
Sbjct: 286 DLKKQGAVGLITYMRTDSTRISDTAKNEAASYIEEHYGKAYLS-----KRSSKSGGAQDA 340
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT + R P+ + L D L+LY LIW R MA QM A + + VD+ +I
Sbjct: 341 HEAVRPTSVMRTPSEMKAYLSRDQLRLYKLIWERFMASQMAAAVIDTVSVDL--VQNNIK 398
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ ++F GF + Y I ++ E D +L + GD + ++ Q
Sbjct: 399 FRANGQTIKFKGFMSVY-------IEGQDEETEDGENKLPVL---EVGDTVKAVNIDENQ 448
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RY+E LVK +EE GIGRPSTYA T+ +Q RNYV V + YP G +V+
Sbjct: 449 HFTQPPPRYTEARLVKTMEEKGIGRPSTYAPTIDTIQKRNYVKVDQKKFYPTELGIIVNE 508
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ YF E+ D FT +MET LD +++G EWK ++ ++ F + H+ + E
Sbjct: 509 SVKEYFPEIIDVDFTVNMETLLDKIASGDMEWKKVISTFYGDFKT--------HVERAEA 560
Query: 947 MLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+EK + KD C CG +++K+ R+G F+ C+ P C
Sbjct: 561 EMEK---------IEIKDEPAGEDCEKCG-SPMVYKMGRYGK--FMACSNFPEC 602
>gi|406991169|gb|EKE10718.1| hypothetical protein ACD_15C00208G0007 [uncultured bacterium]
Length = 743
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 269/658 (40%), Positives = 373/658 (56%), Gaps = 52/658 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES TKAK I +LG Y V SYGH+RDL + + + DF +E+PS +
Sbjct: 3 LVIVESPTKAKTISKFLGGKYTVKSSYGHIRDLPTKKMGIDIEHDFEPEYEIPSKNIDRV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A+ +ILA+D DREGEAI+WH+V L + + E R+ FHEIT+ +I+
Sbjct: 63 KELKKLAKKADGVILATDEDREGEAISWHLVAALGLK--IEE---TQRIAFHEITKKAIE 117
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
AL R ID NLV A ARR LD L+G+ +SP LW+K+ SAGRVQS AL LI ++E
Sbjct: 118 QALANPRSIDYNLVDAQQARRVLDRLVGYELSPFLWKKIRRGLSAGRVQSVALRLIVEKE 177
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI FKP+EYW + A L K++ F A L+ L +L + + +A I
Sbjct: 178 REIQNFKPEEYWAISAKLKSKDAE------FEAKLSKENGTALGKLGVKNKEQADKIIAF 231
Query: 592 INSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A++Q+ +K+ V+KNP PY TSTLQQDA NKL +S+ TM +AQ+LYEG+ +
Sbjct: 232 LEKADYQIASIAKKE-VQKNPLAPYTTSTLQQDANNKLGYSSKQTMMIAQQLYEGINIGK 290
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
+ GLITYMRTD +++S E+ + +I +++G +A E PR + K K AQEAHEAI
Sbjct: 291 DGSVGLITYMRTDSVNLSMESMLSAQKIIGKKFGKEYAL-ENPRFFKTKAKGAQEAHEAI 349
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI----GNADESIV 766
RPT + P L LD K+Y LIW R +A QM PA + + VDI + ++
Sbjct: 350 RPTFPEKDPESLKEFLDPKQYKVYKLIWQRMLASQMAPAVMNSVTVDIQASQKKSKDNFT 409
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
R++ S ++F G+ + D + EN +L L + L L ++ +Q
Sbjct: 410 LRANGSTIKFDGYLKVFGD----KMPVSEN----------LLPELSEKELLDLVKLLHEQ 455
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTV-KSRILYPEFRGRMVS 885
TQPPAR+SE +LVK +EELGIGRPSTYA T+ + DR YV +++ L+PE G V
Sbjct: 456 KFTQPPARFSEATLVKSMEELGIGRPSTYAPTISTIIDRKYVAKDENKRLFPEEIGFTVC 515
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
L +FSE+ DY+FTA ME LD ++ G EW ++ D+++ F
Sbjct: 516 DLLVEHFSEIVDYTFTATMEENLDEIAEGKKEWVPVIKDFYTPF---------------H 560
Query: 946 KMLEKTFGDSLFASLPNK-DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
K LEK + L K DR CP CG G LI K RFG FI C +P C Y KT
Sbjct: 561 KNLEKKTKEIKKEDLHEKLDRQCPDCG-GDLIMKFGRFGK--FIACTNYPSCRYTEKT 615
>gi|448743322|ref|ZP_21725231.1| DNA topoisomerase I [Staphylococcus aureus KT/Y21]
gi|445563251|gb|ELY19413.1| DNA topoisomerase I [Staphylococcus aureus KT/Y21]
Length = 691
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 364/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ + +
Sbjct: 6 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGSV 65
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 66 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 121 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 181 ENEIRNFKPEEYWTIEGEFRYKKSK------FNAKFLHYKNK---PFKLKTKKDVEKITA 231
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 232 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 291
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 292 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 347
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 348 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 406 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 456 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 516 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 564
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 565 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 605
>gi|333897170|ref|YP_004471044.1| DNA topoisomerase I [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112435|gb|AEF17372.1| DNA topoisomerase I [Thermoanaerobacterium xylanolyticum LX-11]
Length = 685
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 259/651 (39%), Positives = 374/651 (57%), Gaps = 53/651 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
KS+V+VES +KAK I YLG Y+V S GH+RDL + + +F +
Sbjct: 3 KSLVIVESPSKAKTIHKYLGKNYKVEASMGHIRDLPKSQLGIDIEKNFEPKYITIRGKGP 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV---ARVVFHEIT 466
++ +K A + LA+DPDREGEAI+WH+ +L NI + R+ FHEIT
Sbjct: 63 IIEKLKKEAKNASKIYLATDPDREGEAISWHLASLL--------NIDINEKCRIEFHEIT 114
Query: 467 EASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSL 526
+ +I+ A++ REI+ NLV A ARR LD L+G+NISPLLW+K+ SAGRVQS A L
Sbjct: 115 KNAIQNAIKNPREINMNLVDAQQARRILDRLVGYNISPLLWKKIKRGLSAGRVQSVATRL 174
Query: 527 ICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAK 586
ICDRE EI++FKP+EYW++ A L K++ T SF A F + ++ + + +
Sbjct: 175 ICDREKEIEDFKPEEYWSISAYLYKEKK----TQSFEA---KFYGTKDGKVELKNENDVN 227
Query: 587 DIEQKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
+I + + V++N K ++NP+ P+ITST+QQ+A+ L F+A TM +AQ+LYEG
Sbjct: 228 EIVKDLTDD--YVVENVKIGTKKRNPSPPFITSTMQQEASKTLGFTAKKTMMIAQQLYEG 285
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
V++ + GLITYMRTD +SDEA K I ++YG +A Y KK N Q+
Sbjct: 286 VEIKGEGSLGLITYMRTDSTRVSDEAKKAAYEYILQKYGKEYANPNAT--YAKKGGNIQD 343
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEAIRPT I P + L D KLY LIWSR +A QM PA + VDI N ++
Sbjct: 344 AHEAIRPTYIDLDPEKIKDSLKPDQYKLYKLIWSRFLASQMSPALYDTMNVDIIN--KNY 401
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
VF++S S+++F GF A Y D D ENE D+ +L L +GD L L E++ +
Sbjct: 402 VFKASGSKIKFSGFMAVYTDDD-------ENENEDK-----MLPMLNSGDFLKLKELKPE 449
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH TQPPARY+E +L+K+LEE GIGRPSTYA + L +R YV + + L P G +V+
Sbjct: 450 QHFTQPPARYTEATLIKELEEKGIGRPSTYAPIISTLLERGYVIKEKKNLKPTELGFIVT 509
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
+ +F ++ D FTA ME +LD + G+ +W ++ ++++ F++ A+ + +E
Sbjct: 510 DVMKEFFPDIVDVKFTAQMEEQLDRIEEGIEKWCDVIDEFYNGFNASLKIAEE-QMKDIE 568
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E+T D C CG ++ K R+G F+ C P C
Sbjct: 569 IKDEET------------DIKCEFCGR-NMVIKYGRYGK--FLACPGFPEC 604
>gi|406968716|gb|EKD93512.1| hypothetical protein ACD_28C00133G0008 [uncultured bacterium]
Length = 746
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 264/651 (40%), Positives = 374/651 (57%), Gaps = 40/651 (6%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES K K I +LG Y V+ S GHVRDL + + DF+ + +P
Sbjct: 2 AKNLVIVESPAKCKTISKFLGKDYAVMASMGHVRDLPKSKMGIDVEHDFAPTYLIPVEKK 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+K +K + + +A+D DREGEAI WH++E LQ L EN + R+VFHEIT+
Sbjct: 62 KLIKDLKSKIKPDTVVWIATDLDREGEAIGWHLLEALQ----LKEN-KIHRIVFHEITKT 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I A+ +++ +L+ A +RR LD L+G+ +SPLLW+K+ SAGRVQS A+ LI
Sbjct: 117 AILEAVSHPGDLNYDLINAQQSRRLLDRLVGYELSPLLWKKVRYGLSAGRVQSVAVRLIV 176
Query: 529 DREMEIDEFKPQEYWTVEA-VLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 587
DRE E D F +EYW++E K+ ++ F A L + K + I EA
Sbjct: 177 DRERERDAFVSEEYWSIEGEFFPTKDKKAV----FTAKLHKHKDKVIK---ISEEKEAHR 229
Query: 588 IEQKINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ + + S ++ V +R V+KNP+P +ITSTLQQ+AA KL S TM +AQ+LYEG+
Sbjct: 230 VLELLKSQDYSV-SEVERKEVKKNPSPPFITSTLQQEAARKLRMSVKKTMIVAQQLYEGI 288
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ DG GLITYMRTD L++S +A I+ LI + YG+ +A E PR FK K AQEA
Sbjct: 289 DMGDGDHQGLITYMRTDSLNLSTQATTAIKKLIKDEYGADYALET-PR-LFKGKKGAQEA 346
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP D+ P+ + LD+D +LY LIW R +ACQMQPA ++ +DI + E +
Sbjct: 347 HEAIRPVDVTLKPSAVKQYLDKDQYRLYELIWKRAIACQMQPAVFDRLTLDISTSKEDYL 406
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ ++F GF A Y + G +E +END ++L SL G L + + Q
Sbjct: 407 FRATGQTLKFPGFIALYVE---GVDDPEEEKENDE----SLLPSLDKGQALGVKTITPFQ 459
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARY+E SLVKKLE GIGRPSTYA T+ + +R YV K L+P G +V+
Sbjct: 460 HFTQPPARYTEASLVKKLEAEGIGRPSTYAPTISTVMNRGYVEKKEGALWPTDTGMVVTD 519
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL ++FS + D FTA ME +LDN++ G +W L ++ F H + EK
Sbjct: 520 FLVNHFSTIVDLGFTAKMEEDLDNIAEGKEDWHKFLSQFYGPF----------HANVDEK 569
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
M D + + D C CG +I K+ RFG F+ C+ +P C
Sbjct: 570 METLKKEDVITETT---DEVCDQCGSPMMI-KLGRFGK--FLSCSNYPTCK 614
>gi|114566376|ref|YP_753530.1| DNA topoisomerase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114337311|gb|ABI68159.1| DNA topoisomerase I [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 694
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 263/656 (40%), Positives = 371/656 (56%), Gaps = 54/656 (8%)
Query: 348 SGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAA 407
+G ++++VES KA+ + +LG Y++ S GHVRDL V ++DF +
Sbjct: 2 AGTTLLIVESAAKARTLGKFLGKGYKIKASVGHVRDLPKSKLGVDVENDFEPQYITIRGK 61
Query: 408 WTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDAL----HENITVARVVFH 463
LK IK A ++LA+DPDREGEAIAWH+ Q+A+ EN R+ FH
Sbjct: 62 GDILKEIKDESQKAGRVLLATDPDREGEAIAWHL------QNAMKIPPEEN---CRIEFH 112
Query: 464 EITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAA 523
EIT ++K A++ +R +D + V A ARR LD L+G+N+SPLLW K+ SAGRVQS A
Sbjct: 113 EITREAVKKAIKNSRPVDLSRVNAQQARRVLDRLVGYNLSPLLWNKIRKGLSAGRVQSVA 172
Query: 524 LSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHT 583
L LICDRE EI F PQEYWTV+A+ + + + F A L +Q K++ I S
Sbjct: 173 LKLICDREEEIKNFIPQEYWTVDAIFNAAKGKNS---KFTARLASYQGKKI---EINSDK 226
Query: 584 EAKDIEQKINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKL 642
E I + + ANF V+K +R RKNP P +ITSTLQQ+A+ +LNF + TM++AQ+L
Sbjct: 227 EVAAIGEYLQGANFTVLK-VERKEKRKNPNPPFITSTLQQEASRRLNFFSNRTMRVAQEL 285
Query: 643 YEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
YEG+++ GLITY+RTD ++ A E I +G+ AP++ P +Y K K+
Sbjct: 286 YEGLEIGKEGTVGLITYLRTDSTRVASSAQMEALDFINSTFGAEFAPDK-PNEY-KSRKS 343
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
AQ+AHEAIRPT I+R P + L D +LY LIW+R ++ QM PA + VDI D
Sbjct: 344 AQDAHEAIRPTSIQRTPESVKAFLSRDQYRLYQLIWNRFVSSQMTPAVYDSLTVDISAGD 403
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
FR+S S+++F+G++ Y D N+ E + LK G+ L L E+
Sbjct: 404 YG--FRASSSQLKFIGYKKVYSD-------------NEEEEPKNNIPELKKGEELALHEL 448
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
+ +QH TQPP R+SE SL+K LEE +GRPSTYA T+ + RNYV ++R P G
Sbjct: 449 KPEQHFTQPPPRFSEASLIKLLEEKSVGRPSTYAPTIDTILKRNYVERQNRQFIPTELGF 508
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V L +F+ + D FTA ME ELD V G +WK ++ D++ F S A+ L
Sbjct: 509 IVVDLLKEHFANILDVEFTARMEGELDLVEEGKLDWKKVVRDFYEPFHSDLEKAREL-AQ 567
Query: 943 QVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
++E E+ + CP CG LI K RFG F+ C+ P C +
Sbjct: 568 KIEIKDEEA------------GKECPQCGRPMLI-KHGRFGK--FMACSGFPECRH 608
>gi|251797453|ref|YP_003012184.1| DNA topoisomerase I [Paenibacillus sp. JDR-2]
gi|247545079|gb|ACT02098.1| DNA topoisomerase I [Paenibacillus sp. JDR-2]
Length = 698
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 267/678 (39%), Positives = 374/678 (55%), Gaps = 57/678 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES KAK I YLG Y V S GH+RDL V ++ F + +
Sbjct: 4 SLVIVESPAKAKTIGKYLGSKYIVKASMGHIRDLPKSQTGVEVENGFQPKYITIRGKGSV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A +++ LA+DPDREGEAIAWH+ L+ L E T RVVF+EIT+ ++
Sbjct: 64 LKELKDASKKVKHVFLAADPDREGEAIAWHLAHYLE----LDETDT-CRVVFNEITKQAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+I+ +LV A ARR LD L+G+ ISPLLW+K+ SAGRVQS + LI DR
Sbjct: 119 KDAFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVCVKLIIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EID F P+EYW++ A L ++ F A + S + + + + E + I
Sbjct: 179 ENEIDAFIPEEYWSITAKLTQQ------GVPFEAK---YHSIKGEKRELHNEEEMQAILA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F+V + ++ +R P+ITS+LQQ+AA KL F A+ TM +AQ+LYEGV+L
Sbjct: 230 ALSGNQFKVAEVKEKERLRNPAPPFITSSLQQEAARKLGFRASKTMSVAQQLYEGVELGK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A +E + I +YG PE+ PR Y KK NAQ+AHEAI
Sbjct: 290 EGTVGLITYMRTDSTRISPVAQEEAKEYIEGKYGPSFYPEQ-PRVYTKKNSNAQDAHEAI 348
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY L+W R ++ QM A + + VD+ + D + FR+S
Sbjct: 349 RPTSTLRDPESMKPFLSRDQFRLYKLVWERFVSSQMASAVLDTMTVDLASGD--VTFRAS 406
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+++F GF Y E ++ E L GD + +E KQH TQ
Sbjct: 407 GSKIKFAGFMKVY----------VEGNDDGTEEEHKFLPPFAIGDVVTSDSIEPKQHFTQ 456
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RYSE LVK LEELGIGRPSTYA TL+ +Q R YV ++ + P G +V+ +
Sbjct: 457 PPPRYSEARLVKTLEELGIGRPSTYAPTLETIQKRGYVAIEEKKFIPTELGDLVNQLMEE 516
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE----- 945
+F E+ D FTA MET+LD+V G+ +W +L ++ F A+ + +VE
Sbjct: 517 FFPEILDSEFTAKMETDLDHVEDGMEDWVRVLSQFYESFEKRLEVAEE-EMKEVEIQDEV 575
Query: 946 --KMLEKT----------FGDSLFAS-LPN--------KD--RSCPVCGEGTLIFKVSRF 982
++ EK FG L S P+ KD +CP CGEG +I + S+
Sbjct: 576 SDEICEKCGRHMVYKMGRFGKFLACSGFPDCRNTKPIVKDIGVTCPKCGEGKIIERRSKK 635
Query: 983 GAGYFIGCNQHPRCNYIA 1000
G F GC+ +P C+Y++
Sbjct: 636 GR-IFYGCDTYPACDYVS 652
>gi|159900902|ref|YP_001547149.1| DNA topoisomerase I [Herpetosiphon aurantiacus DSM 785]
gi|159893941|gb|ABX07021.1| DNA topoisomerase I [Herpetosiphon aurantiacus DSM 785]
Length = 793
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 276/707 (39%), Positives = 389/707 (55%), Gaps = 48/707 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK IQ YLG Y V+ S GHVRDL + D+DFS V+E+ +
Sbjct: 5 LVIVESPAKAKTIQKYLGAGYRVMASMGHVRDLPKSKIGIDIDNDFSPVYEISEGKDKLI 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+K + A+ + LA+D DREGEAIAWHI+ Q + + V R+ F+EIT+ SI+
Sbjct: 65 AELKREIKTADAIYLATDHDREGEAIAWHIL----QAANIGKRKPVYRITFNEITKDSIQ 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ REIDANLV A ARR LD L+G+ ISP+LW K+ SAGRVQS A+ ++ +RE
Sbjct: 121 HAIRNPREIDANLVDAQQARRVLDRLVGYKISPILWAKVRRGLSAGRVQSVAVRMVVERE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFS-FPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
EI+ F P+EYWT+EA L L F A L K+L++ +I S A +
Sbjct: 181 REIESFVPKEYWTIEADLSPAGLKKLGKHDIFRAILHARNGKKLDKFAIPSKDAADAVLA 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL-- 648
+ AN+ V +++ R P+ITSTLQQ+A+ KL FS+ TM++AQKLYEGV +
Sbjct: 241 ALEGANYLVGTVTRKDKRRSPAPPFITSTLQQEASRKLGFSSKRTMQVAQKLYEGVDIGG 300
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
DGT GLITYMRTD ++S +A E R+LI E YG + P + P Y K K AQEAHE
Sbjct: 301 KDGTV-GLITYMRTDSTNVSVDAQTEARTLITELYGKEYVPAK-PNIYKTKAKGAQEAHE 358
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN-------A 761
AIRPT + R P L L D +LY LIW R MA QM A VDIG A
Sbjct: 359 AIRPTSVVRRPDQLKTALGRDEFRLYDLIWKRFMASQMAAAIFDSTSVDIGAGAGIKTAA 418
Query: 762 DESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGE 821
FR++ S ++F GF A Y +E ++ + A+L L G L L +
Sbjct: 419 GAPFTFRATGSVLKFNGFLAVYN--------VSLDEGDEDEDKEALLPPLNEGQALDLHD 470
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRG 881
+ +QH T PP RY+E +LVK++E GIGRPSTYA T+ + R YV + + L P G
Sbjct: 471 LFGEQHFTTPPPRYTEATLVKQMESEGIGRPSTYAPTISTIVAREYVELVEKKLMPTTLG 530
Query: 882 RMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI 941
R+V+ L +F ++ DY+FT+DME LD+++ G W +L +++ F ++ +
Sbjct: 531 RVVTDLLVEHFKDIVDYNFTSDMEQRLDDIAEGQRRWVPVLREFYDPF--------AVRL 582
Query: 942 HQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK 1001
H E + + + LP CP CG L+ K R G F+ C+++P C++
Sbjct: 583 HAAETEMRNVKREEIKTELP-----CPQCGT-HLVIKWGR--NGEFLACSRYPECSWTG- 633
Query: 1002 TLYGDDDEEDTLQRNTNVDEPKLIGHH--PASKEKVLLKSGPYGFYV 1046
D E D +P++ G+ P + LK G +G ++
Sbjct: 634 -----DLERDGDGGIHIASQPEIFGNTNCPECDNPMSLKKGRFGPFL 675
Score = 42.0 bits (97), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 955 SLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
S+ PN +CP CGEG ++ K +R G +F C ++P C Y + L
Sbjct: 737 SIVRLTPNDAPTCPQCGEGKVVAKRARGGRTFF-SCTRYPDCTYASNAL 784
>gi|384547493|ref|YP_005736746.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus ED133]
gi|298694542|gb|ADI97764.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus ED133]
Length = 691
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 6 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 65
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 66 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 121 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 181 ENEIRNFKPEEYWTIEGEFRYKKSK------FNAKFLHYKNK---PFKLKTKKDVEKITA 231
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 232 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 291
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 292 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 347
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 348 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 406 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLERGDKVTATQIEPAQHYTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 456 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 516 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 564
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 565 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 605
>gi|387780358|ref|YP_005755156.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus LGA251]
gi|344177460|emb|CCC87929.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus LGA251]
Length = 689
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKSK------FNAKFLHYKNK---PFKLKTKKDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|282905568|ref|ZP_06313423.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus Btn1260]
gi|282330860|gb|EFB60374.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus Btn1260]
Length = 691
Score = 444 bits (1143), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 6 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 65
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 66 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 121 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 181 ENEIRNFKPEEYWTIEGEFRYKKS------KFNAKFLHYKNK---PFKLKTKKDVEKITA 231
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 232 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 291
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 292 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 347
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 348 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 406 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 456 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 516 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 564
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 565 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 605
>gi|283770314|ref|ZP_06343206.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus H19]
gi|283460461|gb|EFC07551.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus H19]
Length = 691
Score = 444 bits (1143), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 6 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 65
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 66 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 121 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 181 ENEIRNFKPEEYWTIEGEFRYKKSK------FNAKFLHYKNK---PFKLKTKKDVEKITA 231
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 232 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 291
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 292 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 347
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 348 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 406 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 456 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 516 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 564
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 565 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 605
>gi|15924240|ref|NP_371774.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus Mu50]
gi|15926833|ref|NP_374366.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus N315]
gi|49483413|ref|YP_040637.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus MRSA252]
gi|49486089|ref|YP_043310.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus MSSA476]
gi|156979571|ref|YP_001441830.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus Mu3]
gi|253315607|ref|ZP_04838820.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006037|ref|ZP_05144638.2| DNA topoisomerase I [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|269202866|ref|YP_003282135.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus ED98]
gi|295406186|ref|ZP_06815993.1| DNA topoisomerase I [Staphylococcus aureus A8819]
gi|295427737|ref|ZP_06820369.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296274808|ref|ZP_06857315.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus MR1]
gi|297244414|ref|ZP_06928297.1| DNA topoisomerase I [Staphylococcus aureus A8796]
gi|384550007|ref|YP_005739259.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus JKD6159]
gi|384864477|ref|YP_005749836.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|385781478|ref|YP_005757649.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 11819-97]
gi|386830785|ref|YP_006237439.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|387150393|ref|YP_005741957.1| DNA topoisomerase I [Staphylococcus aureus 04-02981]
gi|415683840|ref|ZP_11449042.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CGS00]
gi|415691099|ref|ZP_11453338.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CGS03]
gi|417651423|ref|ZP_12301186.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21172]
gi|417797847|ref|ZP_12445033.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21310]
gi|417887017|ref|ZP_12531156.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21195]
gi|417892156|ref|ZP_12536210.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21201]
gi|418321985|ref|ZP_12933324.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus VCU006]
gi|418561357|ref|ZP_13125848.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21262]
gi|418566645|ref|ZP_13131018.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21264]
gi|418569114|ref|ZP_13133454.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21272]
gi|418582084|ref|ZP_13146162.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1605]
gi|418597742|ref|ZP_13161264.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21342]
gi|418599586|ref|ZP_13163066.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21343]
gi|418603164|ref|ZP_13166555.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21345]
gi|418638023|ref|ZP_13200326.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-3]
gi|418646053|ref|ZP_13208168.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-55]
gi|418654680|ref|ZP_13216576.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-99]
gi|418656577|ref|ZP_13218382.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-105]
gi|418661522|ref|ZP_13223107.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-122]
gi|418875186|ref|ZP_13429446.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIGC93]
gi|418878099|ref|ZP_13432334.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1165]
gi|418880929|ref|ZP_13435148.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1213]
gi|418883857|ref|ZP_13438052.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1769]
gi|418886511|ref|ZP_13440659.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1150]
gi|418891883|ref|ZP_13445998.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1176]
gi|418894950|ref|ZP_13449045.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1057]
gi|418897787|ref|ZP_13451857.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIGC341D]
gi|418900657|ref|ZP_13454714.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1214]
gi|418908961|ref|ZP_13462964.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG149]
gi|418914348|ref|ZP_13468320.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIGC340D]
gi|418917045|ref|ZP_13471004.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1267]
gi|418920328|ref|ZP_13474261.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIGC348]
gi|418922832|ref|ZP_13476749.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1233]
gi|418931321|ref|ZP_13485162.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1750]
gi|418934152|ref|ZP_13487975.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIGC128]
gi|418951027|ref|ZP_13503156.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-160]
gi|418982163|ref|ZP_13529871.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1242]
gi|418985831|ref|ZP_13533517.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1500]
gi|418988071|ref|ZP_13535744.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1835]
gi|418991113|ref|ZP_13538774.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1096]
gi|419784897|ref|ZP_14310655.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-M]
gi|443636864|ref|ZP_21120957.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21236]
gi|443639785|ref|ZP_21123786.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21196]
gi|81649417|sp|Q6G9W3.1|TOP1_STAAS RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|81651264|sp|Q6GHI5.1|TOP1_STAAR RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|81705791|sp|Q7A5Y5.1|TOP1_STAAN RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|81781700|sp|Q99UM1.1|TOP1_STAAM RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|146325789|sp|Q8NWZ9.2|TOP1_STAAW RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|13701050|dbj|BAB42345.1| SA1093 [Staphylococcus aureus subsp. aureus N315]
gi|14247020|dbj|BAB57412.1| DNA topoisomerase I topA homologue [Staphylococcus aureus subsp.
aureus Mu50]
gi|49241542|emb|CAG40228.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus MRSA252]
gi|49244532|emb|CAG42961.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus MSSA476]
gi|156721706|dbj|BAF78123.1| DNA topoisomerase I topA homologue [Staphylococcus aureus subsp.
aureus Mu3]
gi|262075156|gb|ACY11129.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus ED98]
gi|285816932|gb|ADC37419.1| DNA topoisomerase I [Staphylococcus aureus 04-02981]
gi|294968774|gb|EFG44796.1| DNA topoisomerase I [Staphylococcus aureus A8819]
gi|295128095|gb|EFG57729.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297178444|gb|EFH37690.1| DNA topoisomerase I [Staphylococcus aureus A8796]
gi|302332856|gb|ADL23049.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus JKD6159]
gi|312829644|emb|CBX34486.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315131043|gb|EFT87027.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CGS03]
gi|315194138|gb|EFU24531.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CGS00]
gi|329727607|gb|EGG64063.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21172]
gi|334276969|gb|EGL95208.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21310]
gi|341858123|gb|EGS98924.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21201]
gi|341858439|gb|EGS99229.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21195]
gi|364522467|gb|AEW65217.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 11819-97]
gi|365224600|gb|EHM65865.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus VCU006]
gi|371969915|gb|EHO87353.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21264]
gi|371977568|gb|EHO94832.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21262]
gi|371978299|gb|EHO95549.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21272]
gi|374393804|gb|EHQ65108.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21342]
gi|374393893|gb|EHQ65196.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21345]
gi|374396244|gb|EHQ67485.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21343]
gi|375014505|gb|EHS08186.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-99]
gi|375021519|gb|EHS15015.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-55]
gi|375023247|gb|EHS16710.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-3]
gi|375033228|gb|EHS26432.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-105]
gi|375038704|gb|EHS31665.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-122]
gi|375374846|gb|EHS78465.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-160]
gi|377694221|gb|EHT18586.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1165]
gi|377694756|gb|EHT19120.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1057]
gi|377703125|gb|EHT27441.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1214]
gi|377704444|gb|EHT28753.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1242]
gi|377705649|gb|EHT29953.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1500]
gi|377710494|gb|EHT34732.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1605]
gi|377714603|gb|EHT38802.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1750]
gi|377714944|gb|EHT39142.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1769]
gi|377719859|gb|EHT44029.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1835]
gi|377723235|gb|EHT47360.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1096]
gi|377725464|gb|EHT49577.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1150]
gi|377731215|gb|EHT55272.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1176]
gi|377731822|gb|EHT55875.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1213]
gi|377736155|gb|EHT60185.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1233]
gi|377750219|gb|EHT74157.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1267]
gi|377753999|gb|EHT77909.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG149]
gi|377757850|gb|EHT81738.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIGC340D]
gi|377760822|gb|EHT84698.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIGC341D]
gi|377765687|gb|EHT89536.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIGC348]
gi|377770246|gb|EHT94008.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIGC93]
gi|377770895|gb|EHT94654.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIGC128]
gi|383363498|gb|EID40830.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-M]
gi|385196177|emb|CCG15798.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|443406436|gb|ELS65016.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21196]
gi|443406841|gb|ELS65411.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21236]
Length = 689
Score = 444 bits (1143), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKSK------FNAKFLHYKNK---PFKLKTKKDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|21282862|ref|NP_645950.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus MW2]
gi|148267740|ref|YP_001246683.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus JH9]
gi|150393798|ref|YP_001316473.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus JH1]
gi|253731869|ref|ZP_04866034.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733512|ref|ZP_04867677.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus TCH130]
gi|257425304|ref|ZP_05601729.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 55/2053]
gi|257427964|ref|ZP_05604362.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 65-1322]
gi|257430598|ref|ZP_05606980.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 68-397]
gi|257433358|ref|ZP_05609716.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus E1410]
gi|257436200|ref|ZP_05612247.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus M876]
gi|257795694|ref|ZP_05644673.1| DNA topoisomerase I [Staphylococcus aureus A9781]
gi|258415918|ref|ZP_05682188.1| DNA topoisomerase I [Staphylococcus aureus A9763]
gi|258421680|ref|ZP_05684604.1| DNA topoisomerase I [Staphylococcus aureus A9719]
gi|258434836|ref|ZP_05688910.1| DNA topoisomerase I [Staphylococcus aureus A9299]
gi|258444588|ref|ZP_05692917.1| DNA topoisomerase I [Staphylococcus aureus A8115]
gi|258447579|ref|ZP_05695723.1| DNA topoisomerase I [Staphylococcus aureus A6300]
gi|258449421|ref|ZP_05697524.1| DNA topoisomerase I [Staphylococcus aureus A6224]
gi|258454800|ref|ZP_05702764.1| DNA topoisomerase I [Staphylococcus aureus A5937]
gi|282892738|ref|ZP_06300973.1| DNA topoisomerase I [Staphylococcus aureus A8117]
gi|282903805|ref|ZP_06311693.1| DNA topoisomerase [Staphylococcus aureus subsp. aureus C160]
gi|282908543|ref|ZP_06316373.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282910822|ref|ZP_06318625.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus WBG10049]
gi|282914027|ref|ZP_06321814.1| DNA topoisomerase [Staphylococcus aureus subsp. aureus M899]
gi|282916510|ref|ZP_06324268.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus D139]
gi|282918949|ref|ZP_06326684.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus C427]
gi|282924072|ref|ZP_06331748.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus C101]
gi|283957993|ref|ZP_06375444.1| DNA topoisomerase [Staphylococcus aureus subsp. aureus A017934/97]
gi|293501059|ref|ZP_06666910.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 58-424]
gi|293510021|ref|ZP_06668729.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus M809]
gi|293526607|ref|ZP_06671292.1| DNA topoisomerase [Staphylococcus aureus subsp. aureus M1015]
gi|297208104|ref|ZP_06924535.1| DNA topoisomerase TopA [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300912185|ref|ZP_07129628.1| DNA topoisomerase TopA [Staphylococcus aureus subsp. aureus TCH70]
gi|384867866|ref|YP_005748062.1| DNA topoisomerase TopA [Staphylococcus aureus subsp. aureus TCH60]
gi|416839297|ref|ZP_11902691.1| DNA topoisomerase I [Staphylococcus aureus O11]
gi|417896055|ref|ZP_12540022.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21235]
gi|418317188|ref|ZP_12928612.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21340]
gi|418424391|ref|ZP_12997513.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS1]
gi|418427386|ref|ZP_13000398.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS2]
gi|418430226|ref|ZP_13003142.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS3a]
gi|418433192|ref|ZP_13005969.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS4]
gi|418436863|ref|ZP_13008665.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS5]
gi|418439735|ref|ZP_13011442.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS6]
gi|418442787|ref|ZP_13014389.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS7]
gi|418445846|ref|ZP_13017322.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS8]
gi|418448790|ref|ZP_13020182.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS9]
gi|418451614|ref|ZP_13022948.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS10]
gi|418454670|ref|ZP_13025932.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS11a]
gi|418457546|ref|ZP_13028749.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS11b]
gi|418572212|ref|ZP_13136424.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21333]
gi|421150198|ref|ZP_15609854.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|424768066|ref|ZP_18195359.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CM05]
gi|448741767|ref|ZP_21723724.1| DNA topoisomerase I [Staphylococcus aureus KT/314250]
gi|21204301|dbj|BAB94998.1| MW1133 [Staphylococcus aureus subsp. aureus MW2]
gi|147740809|gb|ABQ49107.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus JH9]
gi|149946250|gb|ABR52186.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus JH1]
gi|253724279|gb|EES93008.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728566|gb|EES97295.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus TCH130]
gi|257271761|gb|EEV03899.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 55/2053]
gi|257274805|gb|EEV06292.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278726|gb|EEV09345.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 68-397]
gi|257281451|gb|EEV11588.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus E1410]
gi|257284482|gb|EEV14602.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus M876]
gi|257789666|gb|EEV28006.1| DNA topoisomerase I [Staphylococcus aureus A9781]
gi|257839254|gb|EEV63728.1| DNA topoisomerase I [Staphylococcus aureus A9763]
gi|257842366|gb|EEV66791.1| DNA topoisomerase I [Staphylococcus aureus A9719]
gi|257849197|gb|EEV73179.1| DNA topoisomerase I [Staphylococcus aureus A9299]
gi|257850081|gb|EEV74034.1| DNA topoisomerase I [Staphylococcus aureus A8115]
gi|257853770|gb|EEV76729.1| DNA topoisomerase I [Staphylococcus aureus A6300]
gi|257857409|gb|EEV80307.1| DNA topoisomerase I [Staphylococcus aureus A6224]
gi|257863183|gb|EEV85947.1| DNA topoisomerase I [Staphylococcus aureus A5937]
gi|282314044|gb|EFB44436.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus C101]
gi|282316759|gb|EFB47133.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus C427]
gi|282318997|gb|EFB49349.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus D139]
gi|282322095|gb|EFB52419.1| DNA topoisomerase [Staphylococcus aureus subsp. aureus M899]
gi|282325427|gb|EFB55736.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus WBG10049]
gi|282327605|gb|EFB57888.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282595423|gb|EFC00387.1| DNA topoisomerase [Staphylococcus aureus subsp. aureus C160]
gi|282764735|gb|EFC04860.1| DNA topoisomerase I [Staphylococcus aureus A8117]
gi|283790142|gb|EFC28959.1| DNA topoisomerase [Staphylococcus aureus subsp. aureus A017934/97]
gi|290920679|gb|EFD97742.1| DNA topoisomerase [Staphylococcus aureus subsp. aureus M1015]
gi|291096064|gb|EFE26325.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 58-424]
gi|291466965|gb|EFF09483.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus M809]
gi|296887347|gb|EFH26249.1| DNA topoisomerase TopA [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300886431|gb|EFK81633.1| DNA topoisomerase TopA [Staphylococcus aureus subsp. aureus TCH70]
gi|312438371|gb|ADQ77442.1| DNA topoisomerase TopA [Staphylococcus aureus subsp. aureus TCH60]
gi|323441028|gb|EGA98735.1| DNA topoisomerase I [Staphylococcus aureus O11]
gi|341840956|gb|EGS82428.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21235]
gi|365239560|gb|EHM80362.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21340]
gi|371984696|gb|EHP01805.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21333]
gi|387718621|gb|EIK06579.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS3a]
gi|387718973|gb|EIK06929.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS2]
gi|387720298|gb|EIK08210.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS1]
gi|387725632|gb|EIK13236.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS4]
gi|387727967|gb|EIK15467.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS5]
gi|387730697|gb|EIK18058.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS6]
gi|387735774|gb|EIK22884.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS8]
gi|387737452|gb|EIK24518.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS7]
gi|387738006|gb|EIK25060.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS9]
gi|387744495|gb|EIK31259.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS10]
gi|387745785|gb|EIK32535.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS11a]
gi|387747278|gb|EIK33987.1| DNA topoisomerase 1 [Staphylococcus aureus subsp. aureus VRS11b]
gi|394329588|gb|EJE55690.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|402348703|gb|EJU83682.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CM05]
gi|408423442|emb|CCJ10853.1| DNA topoisomerase [Staphylococcus aureus subsp. aureus ST228]
gi|408425432|emb|CCJ12819.1| DNA topoisomerase [Staphylococcus aureus subsp. aureus ST228]
gi|408427420|emb|CCJ14783.1| DNA topoisomerase [Staphylococcus aureus subsp. aureus ST228]
gi|408429407|emb|CCJ26572.1| DNA topoisomerase [Staphylococcus aureus subsp. aureus ST228]
gi|408431395|emb|CCJ18710.1| DNA topoisomerase [Staphylococcus aureus subsp. aureus ST228]
gi|408433389|emb|CCJ20674.1| DNA topoisomerase [Staphylococcus aureus subsp. aureus ST228]
gi|408435380|emb|CCJ22640.1| DNA topoisomerase [Staphylococcus aureus subsp. aureus ST228]
gi|408437365|emb|CCJ24608.1| DNA topoisomerase [Staphylococcus aureus subsp. aureus ST228]
gi|445547405|gb|ELY15674.1| DNA topoisomerase I [Staphylococcus aureus KT/314250]
Length = 691
Score = 444 bits (1143), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 6 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 65
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 66 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 121 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 181 ENEIRNFKPEEYWTIEGEFRYKKSK------FNAKFLHYKNK---PFKLKTKKDVEKITA 231
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 232 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 291
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 292 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 347
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 348 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 406 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 456 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 516 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 564
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 565 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 605
>gi|297591305|ref|ZP_06949943.1| DNA topoisomerase TopA [Staphylococcus aureus subsp. aureus MN8]
gi|297576191|gb|EFH94907.1| DNA topoisomerase TopA [Staphylococcus aureus subsp. aureus MN8]
Length = 691
Score = 444 bits (1143), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 6 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 65
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 66 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELKDS-KEN----RVVFNEITKDAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 121 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 181 ENEIRNFKPEEYWTIEGEFRYKKSK------FNAKFLHYKNK---PFKLKTKKDVEKITA 231
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 232 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 291
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 292 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 347
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 348 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 406 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 456 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 516 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 564
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 565 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 605
>gi|122292615|sp|Q06AK7.1|TOP1_STAAU RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|114809810|gb|ABI81408.1| DNA topoisomerase I [Staphylococcus aureus]
Length = 689
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 362/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKS------KFNAKFLHYKNK---PFKLKTKKDVEKITT 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I +YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKAEAKQYITNKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|320451358|ref|YP_004203454.1| DNA topoisomerase I [Thermus scotoductus SA-01]
gi|320151527|gb|ADW22905.1| DNA topoisomerase I [Thermus scotoductus SA-01]
Length = 849
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 275/708 (38%), Positives = 389/708 (54%), Gaps = 73/708 (10%)
Query: 353 VVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLK 412
+VVES KA+ IQ LG YEV S GHV DL R V + DF+ +EV ++
Sbjct: 1 MVVESPAKARSIQKMLGPGYEVRASLGHVADLPERELGVDVERDFAPTYEVKKDKKPVVE 60
Query: 413 SIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKV 472
++K A G + L++A+DPDREGEAI WH+ +L + + RV FHEIT ++
Sbjct: 61 ALKRAAKG-KRLLIATDPDREGEAIGWHVARLLGR-----DPKEPLRVEFHEITPRVVRQ 114
Query: 473 ALQAAREIDANLVQAYLARRALDYLIGFNISPLL---WRKLPGCQSAGRVQSAALSLICD 529
A+Q R ID NLV A ARR LD L+G+N+SPLL +RK SAGRVQS AL L+ +
Sbjct: 115 AVQNPRPIDQNLVDAQQARRVLDRLVGYNLSPLLSLEFRKR--ALSAGRVQSVALRLLVE 172
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRL--------NQLSIGS 581
RE EI+ F+P+EYWT+E V + +L PA L + KRL +L + +
Sbjct: 173 REEEIEAFRPEEYWTLEGVFALGQDRTL-----PASLYEVEGKRLWAGQGEKEGKLHLAN 227
Query: 582 HTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQK 641
+A+ + +++ +++V++ R + P P+ TSTLQQ A+++L ++A+ TM++AQ+
Sbjct: 228 EAQAQALAEEVKGPSYRVVQVETRERRKSPPPPFTTSTLQQAASSRLGYTASRTMRIAQR 287
Query: 642 LYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVK 701
LYEGV LP+GT GLITYMRTD + +S EA + R +I +G + PE GPR Y + +
Sbjct: 288 LYEGVDLPEGTV-GLITYMRTDSVRVSPEALQAAREVIQRIFGLEYLPE-GPRVYRNRKE 345
Query: 702 NAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNA 761
Q+AHEAIRPTD+RR P + L ++ +LY LIW R +A QM+ A Q V + +
Sbjct: 346 GVQDAHEAIRPTDVRRTPDSVRKYLSDEEYRLYDLIWRRFVASQMRDALYDQTVVLLKDE 405
Query: 762 DES--IVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYL 819
E FR+S S ++F G+ A+ D G + NE + EA L + G L
Sbjct: 406 GEKPRFTFRASGSVLKFEGYLKAWGRGDEGGVAQAVNEGQE-VEAEPPLPLVAEGTGAEL 464
Query: 820 GEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEF 879
EV+ +QH T+PP RY++ +LVK +EELGIGRPSTYA TL+ L+ R Y+ K R L P
Sbjct: 465 LEVKAQQHFTEPPPRYTDATLVKTMEELGIGRPSTYAPTLETLEKRGYMVRKGRTLLPTP 524
Query: 880 RGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSL 939
GR V+ +L F +V Y FTA ME LD V G W ++ +++ F
Sbjct: 525 LGRQVTHYLKERFPQVVAYEFTARMEDRLDQVEEGKAPWPKVVWEFYEPFLG-------- 576
Query: 940 HIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYI 999
+ QV K ++CP CG L KVSRFG F+GC +P C Y
Sbjct: 577 ELSQVPK------------------KTCPRCGR-PLELKVSRFGQ--FLGCTGYPECTYT 615
Query: 1000 AKTLYGDDDEEDTLQRNTNVDEPKLIGHH-PASKEKVLLKSGPYGFYV 1046
+ L+R EP IG P ++ K G YG ++
Sbjct: 616 -----------EPLERKKEA-EP--IGEACPKCGRPLVRKEGRYGSFI 649
>gi|152991392|ref|YP_001357114.1| DNA topoisomerase I [Nitratiruptor sp. SB155-2]
gi|151423253|dbj|BAF70757.1| DNA topoisomerase I [Nitratiruptor sp. SB155-2]
Length = 732
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 272/701 (38%), Positives = 399/701 (56%), Gaps = 68/701 (9%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDD-FSMVWEVPSAA 407
GK++++VES KA+ I+ +LG YEV+ S GH+RDL S ++ ++D F + V
Sbjct: 2 GKNLIIVESPAKARTIKNFLGKEYEVIASKGHIRDLPKSSFGIKIEEDKFIPQYRVDKEH 61
Query: 408 WTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITE 467
K +K A+ + +A+D DREGEAI +HI E + ++ + R+VFHEIT+
Sbjct: 62 SQITKQLKELAKKADTVYIATDEDREGEAIGYHIAEAIGKKPQ-----ELPRIVFHEITK 116
Query: 468 ASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLI 527
++I+ ALQ R ID N V A RR LD ++G+ +SPLL K+ SAGRVQSAAL L+
Sbjct: 117 SAIQKALQNPRTIDMNRVNAQQTRRLLDRIVGYKLSPLLSSKIQRGLSAGRVQSAALKLV 176
Query: 528 CDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 587
D+E EI FKPQEYW+++A+ + DT A L + +K++ ++ I + EA+
Sbjct: 177 VDKEREIQAFKPQEYWSIDAIFN-------DTIE--AALYEYMNKKIGKMDIKNEKEAQA 227
Query: 588 IEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
I ++ + +F V K K+ + K+P P++TSTLQQ A++KL FS TM +AQKLYEGVQ
Sbjct: 228 IVDQVKNESFVVAKIEKKKRITKSPAPFMTSTLQQTASSKLGFSPKKTMMIAQKLYEGVQ 287
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
P G G+ITYMRTD L+I+ EA + R LI +++G + P++ P++Y K K AQEAH
Sbjct: 288 TPKGIT-GVITYMRTDSLNIAKEAQEAARDLIKKQFGEKYLPKK-PKEYATKSKGAQEAH 345
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT + P + L D LKLY+LI++R +A QM+ A V + Q I S F
Sbjct: 346 EAIRPTMLDFTPEVAKNYLSADELKLYTLIYNRFLASQMEDA-VFETQT-IYFKSPSATF 403
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYK--ENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
++S ++ F GF YK NE+ D+ +L LK G+ L ++E
Sbjct: 404 KASGRKLIFDGF-------------YKVLGNEDKDK-----LLPDLKEGEEAKLTKIEAN 445
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PPARY+E SL+K LE LGIGRPSTYA T+ +LQ RNY+ ++ R + P V
Sbjct: 446 QHFTEPPARYTEASLIKMLESLGIGRPSTYAPTIALLQARNYIELEKRAIKPTEIAFKVI 505
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
L +F E+ D SFTA ME ELD ++ +W+ +L ++ F I +E
Sbjct: 506 EVLEKHFPEIVDSSFTAKMEEELDEIAEAKKDWQKVLKAFYDPF-----------IELIE 554
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1005
K ++ S ++P R+CP CG L+ + RFG FI C+ P+C Y +
Sbjct: 555 KGKKEI--KSQKVAIPV-GRNCPECG-AELVKRKGRFGE--FIACSAFPKCKYTEQI--- 605
Query: 1006 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYV 1046
+ EE Q + V E +++K GP G ++
Sbjct: 606 -ESEEKGPQESNEVCE--------KCGSPMVVKQGPRGSFL 637
>gi|282927592|ref|ZP_06335208.1| DNA topoisomerase I [Staphylococcus aureus A10102]
gi|282590595|gb|EFB95672.1| DNA topoisomerase I [Staphylococcus aureus A10102]
Length = 691
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 6 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 65
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 66 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 121 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 181 ENEIRNFKPEEYWTIEGEFRYKKSK------FNAKFLHYKNK---PFKLKTKKDVEKITA 231
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 232 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMIVAQQLYEGIDLKK 291
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 292 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 347
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 348 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 406 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 456 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 516 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 564
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 565 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 605
>gi|416844682|ref|ZP_11905368.1| DNA topoisomerase I [Staphylococcus aureus O46]
gi|323443897|gb|EGB01508.1| DNA topoisomerase I [Staphylococcus aureus O46]
Length = 691
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 6 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 65
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 66 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 121 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 181 ENEIRNFKPEEYWTIEGEFRYKKSK------FNAKFLHYKNK---PFKLKTKKDVEKITA 231
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 232 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 291
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 292 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 347
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 348 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 406 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 456 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 516 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QGVERAEEE 564
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 565 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 605
>gi|269836416|ref|YP_003318644.1| DNA topoisomerase I [Sphaerobacter thermophilus DSM 20745]
gi|269785679|gb|ACZ37822.1| DNA topoisomerase I [Sphaerobacter thermophilus DSM 20745]
Length = 769
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 266/655 (40%), Positives = 361/655 (55%), Gaps = 43/655 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KA+ I LG Y V S GHVRDL V D DF+ V+ +P
Sbjct: 61 TLVIVESPAKARNIGRILGRGYTVKASMGHVRDLPKSKLGVETDRDFAPVYLIPRDKSKV 120
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K ++ + A ++LA+DPDREGEAIAWH+VE D V R+VFHEIT +I
Sbjct: 121 VKELRADVKEAREILLATDPDREGEAIAWHLVEATDPGDK-----PVRRIVFHEITPEAI 175
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ AL+ R ID LV+A ARR LD L+G+ ISPLLWRK+ SAGRVQS AL L+ +R
Sbjct: 176 REALRNPRGIDMRLVEAQQARRILDRLVGYEISPLLWRKVKRGLSAGRVQSVALRLVVER 235
Query: 531 EMEIDEFKPQEYWTVEAVLDKKES-HSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
E EI F PQEYWT++A L K+E+ + F A L+ ++ + + I
Sbjct: 236 EREIQNFVPQEYWTLDAELAKREAVNGRKPKPFVASLSRVNGQKPD---LKDEASTMAIV 292
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ ++ A FQV+K + R+ P+ TSTLQQ+A+ KLN TM++AQ+LYEG+ L
Sbjct: 293 RALDGAEFQVVKVEVKETQRRPAPPFTTSTLQQEASRKLNMPVRRTMQIAQELYEGIDLG 352
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
D GLITYMRTD +++ A R +I ERYG P+ P Y +K K AQEAHEA
Sbjct: 353 DAGTVGLITYMRTDSTNVAASAQARAREVIAERYGPEFLPDRPP-VYTRKAKGAQEAHEA 411
Query: 710 IRPTDIRRLPAMLSGLL---DEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG----NAD 762
IRPTD R P + L KLY LIW R +A Q + A VDI
Sbjct: 412 IRPTDPARDPESIKAFLGGASSPRYKLYRLIWQRFIASQTRNAVFDSTAVDIDAGPPGGP 471
Query: 763 ESIVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGE 821
+ FR++ S ++F GF A Y E D + +E DR L L G+ L L
Sbjct: 472 KPYRFRATGSVIKFPGFLAIYREGRDDDTV-----DEIDRE----ALPPLTEGEVLDLVR 522
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRG 881
+ +QH TQPP R++E +LVK LEELGIGRPSTYA T+ LQ RNYVTV+ R LYP G
Sbjct: 523 LLPEQHFTQPPPRFTEATLVKALEELGIGRPSTYAPTIATLQARNYVTVEQRRLYPTELG 582
Query: 882 RMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI 941
+V+ L +F ++ D +FT+ +E ELD +++G W ++ ++ F
Sbjct: 583 TVVNDLLVQHFPDIVDVNFTSKLEDELDQIASGEQSWVPMVRAFYGPF------------ 630
Query: 942 HQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
H+ + EK G A P D C CG ++ K+ R+ G F+ C+ P C
Sbjct: 631 HETVERAEKEIGRVKVADEPT-DEVCEKCGR-PMVIKLGRY--GRFLACSGFPEC 681
>gi|406886015|gb|EKD33116.1| hypothetical protein ACD_76C00094G0047 [uncultured bacterium]
Length = 689
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 260/656 (39%), Positives = 376/656 (57%), Gaps = 50/656 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGD-MYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAA 407
K++++VES TKAK I +L + Y++L S+GH+RDL + + + DF+ + +P +
Sbjct: 2 AKNLIIVESPTKAKTISKFLPESQYKILSSFGHIRDLPQKKMGIDIEHDFTPEYVIPVKS 61
Query: 408 WTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITE 467
+ +K A A ++ A+D DREGEAI WH+ ++L D+ + R+ FHEIT+
Sbjct: 62 KKAVTDLKSAAKNAGEILFATDEDREGEAITWHLSKILDVDDS-----KLKRITFHEITK 116
Query: 468 ASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLI 527
++I+ AL R ID NLV A ARR LD L+G+ +SPLLW+K+ SAGRVQS A+ LI
Sbjct: 117 SAIEEALAHPRGIDINLVNAQQARRILDRLVGYELSPLLWKKVARGLSAGRVQSVAVRLI 176
Query: 528 CDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 587
+RE EI FKP+EYWT+EAV +K D F + L K+L++ + + +A
Sbjct: 177 VEREREIQAFKPEEYWTIEAVFEK------DGSEFQSKLAKINGKKLDKFDVNNSEQANK 230
Query: 588 IEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
I ++ A+F+V + + PTP+ TS+LQQDA N+ FSA TM LAQ+LYEGV
Sbjct: 231 IVVDVHGADFKVAGVETSTAKKSAPTPFTTSSLQQDANNRFGFSAKQTMMLAQQLYEGVD 290
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
L + GLITYMRTD L++S + E R I + YG +AP R + K K AQEAH
Sbjct: 291 LGSHGSQGLITYMRTDSLNLSQKFLGEAREHIIKEYGKEYAPANS-RVFKTKSKGAQEAH 349
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI-GNADESIV 766
EAIRP ++ R P + L+ KLYSLIW R++A QM A + + +DI GN
Sbjct: 350 EAIRPAEVSRTPDSVKQYLNAQQHKLYSLIWKRSVASQMNDAVLNKKAIDIEGNGH---T 406
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR+S + F GF Y++ KE IL LK D + +E KQ
Sbjct: 407 FRASGMTINFDGFLRVYQE------SAKET----------ILPELKESDSVKEKIIEPKQ 450
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTV-KSRILYPEFRGRMVS 885
H T+PPARYS+ +LVK LEE GIGRPSTYA T+ + R YV +S+ L P +V+
Sbjct: 451 HFTEPPARYSDATLVKTLEEYGIGRPSTYAPTISTIIARGYVERNESKRLQPTDIAFVVT 510
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
L + F ++ DY FTA+ME +LD++S G EW ++ ++++ F +I +
Sbjct: 511 DVLVNNFQQIVDYEFTANMEEQLDDISEGKKEWVPVIREFYTPFHK--------NIILKD 562
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAK 1001
K LEK +P+K+ +C CG+ +I K+ RFG F+ C+ +P C + K
Sbjct: 563 KELEK----KELTEMPSKE-TCDKCGK-PMIIKMGRFGK--FLSCSGYPDCKNMKK 610
>gi|386728935|ref|YP_006195318.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 71193]
gi|387602527|ref|YP_005734048.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus ST398]
gi|404478589|ref|YP_006710019.1| DNA topoisomerase I [Staphylococcus aureus 08BA02176]
gi|418309728|ref|ZP_12921279.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21331]
gi|418980043|ref|ZP_13527831.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus DR10]
gi|283470465|emb|CAQ49676.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus ST398]
gi|365237851|gb|EHM78690.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21331]
gi|379992206|gb|EIA13663.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus DR10]
gi|384230228|gb|AFH69475.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 71193]
gi|404440078|gb|AFR73271.1| DNA topoisomerase I [Staphylococcus aureus 08BA02176]
Length = 691
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 362/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 6 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 65
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 66 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 121 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 181 ENEIRNFKPEEYWTIEGEFRYKKSK------FNAKFLHYKNK---PFKLKTKKDVEKITA 231
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 232 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 291
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I +YG + + RK K + Q+AHEAI
Sbjct: 292 QGTIGLITYMRTDSTRISDTAKAEAKQYITNKYGESYTSK---RKASGK-QGDQDAHEAI 347
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 348 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 406 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 456 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 516 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 564
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 565 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 605
>gi|452990941|emb|CCQ97795.1| DNA topoisomerase I [Clostridium ultunense Esp]
Length = 700
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 268/649 (41%), Positives = 371/649 (57%), Gaps = 50/649 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES KAK I YLG Y+VL S GH+RDL V ++ F +
Sbjct: 4 SLVIVESPAKAKTIGKYLGKKYKVLASMGHIRDLPKSQIGVDVENHFEPKYITIRGKGEL 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A + + LA+DPDREGEAIAWH+ + L L++ I RVVF+EIT+ +I
Sbjct: 64 LKELKDASKKVKQVYLAADPDREGEAIAWHLAQYLNLD--LNQPI---RVVFNEITKQAI 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ + Q R+I+ NLV+A ARR LD L+G+ ISPLLW+K+ SAGRVQS A+ LI DR
Sbjct: 119 QESFQQPRKINMNLVEAQQARRILDRLVGYKISPLLWKKVRKGLSAGRVQSVAVKLIIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F P+EYWTV A + + F A F +++ + + E K++ +
Sbjct: 179 EREIKSFVPEEYWTVTAYFGEGKDR------FEASFYGFDGEKVE---LRNEEEVKELLR 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL-P 649
KI ++V+K ++ R P P+ TS+LQQ+AA KLNF A TM++AQ+LYEG+ + P
Sbjct: 230 KIEGGTYRVVKVVRKERKRNPPPPFTTSSLQQEAARKLNFRAAKTMRIAQQLYEGISIGP 289
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
+G GLITYMRTD L IS+ AA+E R I + +G + PEE R + K AQ+AHEA
Sbjct: 290 EGNT-GLITYMRTDSLRISETAAEEARKYIRDDFGPSYLPEEQ-RHHVNKA-GAQDAHEA 346
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG-NADESIVFR 768
IRPT I R P L L D +LY LIW R +A QM A + + V I N E FR
Sbjct: 347 IRPTSIYREPERLKAYLSRDQFRLYKLIWDRFLASQMASALLDTVSVSIEVNGAE---FR 403
Query: 769 SSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
+S S V+F GF Y E D G K+ EE +L L+ G + L ++E KQH
Sbjct: 404 ASGSTVKFPGFMKIYIEGSDEG----KKEEEK-------LLPPLEEGKTVSLKKLEEKQH 452
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RY+E LVK +EELGIGRPSTYA TL+ +Q R YV ++ + P G +V +
Sbjct: 453 FTQPPPRYTEARLVKTMEELGIGRPSTYAPTLETIQKRGYVVLEDKRFLPTELGEIVISL 512
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ +F E+ + +FTA+ME+ LD V G EW +L ++ F + LH+ + E M
Sbjct: 513 MEEFFPEIINVAFTAEMESNLDKVEEGKEEWTLVLDQFYRPF------LERLHVAE-ENM 565
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E + + C +CG +++K+ RFG F+ C+ P C
Sbjct: 566 KEVDISEEF------SEERCDLCGR-PMVYKMGRFGK--FLACSGFPEC 605
>gi|258423909|ref|ZP_05686794.1| DNA topoisomerase I [Staphylococcus aureus A9635]
gi|417891711|ref|ZP_12535768.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21200]
gi|418283141|ref|ZP_12895898.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21202]
gi|257845938|gb|EEV69967.1| DNA topoisomerase I [Staphylococcus aureus A9635]
gi|341850997|gb|EGS91926.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21200]
gi|365168738|gb|EHM60076.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21202]
Length = 691
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 6 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 65
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 66 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 121 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT++ K+S F A H+++K + + + + I
Sbjct: 181 ENEIRNFKPEEYWTIDGEFRYKKSK------FNAKFLHYKNK---PFKLKTKKDVEKITA 231
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 232 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 291
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 292 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 347
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 348 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 406 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 456 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 516 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 564
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 565 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 605
>gi|418559089|ref|ZP_13123635.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21252]
gi|418889042|ref|ZP_13443178.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1524]
gi|418993871|ref|ZP_13541507.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG290]
gi|371975380|gb|EHO92674.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21252]
gi|377745921|gb|EHT69896.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG290]
gi|377754552|gb|EHT78461.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1524]
Length = 689
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT++ K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIDGEFRYKKSK------FNAKFLHYKNK---PFKLKTKKDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|57651819|ref|YP_186125.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus COL]
gi|221142040|ref|ZP_03566533.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|262051312|ref|ZP_06023535.1| DNA topoisomerase I [Staphylococcus aureus 930918-3]
gi|284024243|ref|ZP_06378641.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 132]
gi|294848245|ref|ZP_06788992.1| DNA topoisomerase I [Staphylococcus aureus A9754]
gi|379014441|ref|YP_005290677.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus VC40]
gi|384869785|ref|YP_005752499.1| DNA topoisomerase [Staphylococcus aureus subsp. aureus T0131]
gi|387142858|ref|YP_005731251.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus TW20]
gi|415686440|ref|ZP_11450529.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CGS01]
gi|418281435|ref|ZP_12894246.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21178]
gi|418286735|ref|ZP_12899375.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21209]
gi|418317780|ref|ZP_12929196.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21232]
gi|418570756|ref|ZP_13135017.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21283]
gi|418579083|ref|ZP_13143178.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1114]
gi|418642924|ref|ZP_13205110.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-24]
gi|418647495|ref|ZP_13209559.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-88]
gi|418873525|ref|ZP_13427820.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-125]
gi|418903462|ref|ZP_13457503.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1770]
gi|418906185|ref|ZP_13460212.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIGC345D]
gi|418911857|ref|ZP_13465840.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG547]
gi|418925487|ref|ZP_13479389.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG2018]
gi|418928509|ref|ZP_13482395.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1612]
gi|418955390|ref|ZP_13507330.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-189]
gi|424785081|ref|ZP_18211884.1| DNA topoisomerase I [Staphylococcus aureus CN79]
gi|440705981|ref|ZP_20886730.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21282]
gi|440734696|ref|ZP_20914308.1| DNA topoisomerase TopA [Staphylococcus aureus subsp. aureus DSM
20231]
gi|81694642|sp|Q5HGI2.1|TOP1_STAAC RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|146325786|sp|Q2FHI8.2|TOP1_STAA3 RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|146325787|sp|Q2FZ32.2|TOP1_STAA8 RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|57286005|gb|AAW38099.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus COL]
gi|259160687|gb|EEW45708.1| DNA topoisomerase I [Staphylococcus aureus 930918-3]
gi|269940741|emb|CBI49123.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus TW20]
gi|294825045|gb|EFG41467.1| DNA topoisomerase I [Staphylococcus aureus A9754]
gi|315198490|gb|EFU28819.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CGS01]
gi|329313920|gb|AEB88333.1| DNA topoisomerase [Staphylococcus aureus subsp. aureus T0131]
gi|365165257|gb|EHM57085.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21178]
gi|365165711|gb|EHM57462.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21209]
gi|365245048|gb|EHM85700.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21232]
gi|371982936|gb|EHP00084.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21283]
gi|374363138|gb|AEZ37243.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus VC40]
gi|375016037|gb|EHS09681.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-24]
gi|375029461|gb|EHS22788.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-88]
gi|375366062|gb|EHS70074.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-125]
gi|375370873|gb|EHS74665.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-189]
gi|377697110|gb|EHT21465.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1114]
gi|377725235|gb|EHT49350.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG547]
gi|377738421|gb|EHT62430.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1612]
gi|377742477|gb|EHT66462.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG1770]
gi|377744556|gb|EHT68533.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIG2018]
gi|377765485|gb|EHT89335.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CIGC345D]
gi|421956491|gb|EKU08820.1| DNA topoisomerase I [Staphylococcus aureus CN79]
gi|436431724|gb|ELP29077.1| DNA topoisomerase TopA [Staphylococcus aureus subsp. aureus DSM
20231]
gi|436507512|gb|ELP43192.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21282]
Length = 689
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKS------KFNAKFLHYKNK---PFKLKTKKDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKVEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C +CG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEICG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|440780931|ref|ZP_20959402.1| DNA topoisomerase I [Clostridium pasteurianum DSM 525]
gi|440221519|gb|ELP60724.1| DNA topoisomerase I [Clostridium pasteurianum DSM 525]
Length = 694
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 262/681 (38%), Positives = 376/681 (55%), Gaps = 61/681 (8%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+++V+VES KAK I YLG + V S GHVRDL + V ++D++ +
Sbjct: 2 GQNLVIVESPAKAKTIGKYLGSKFTVEASMGHVRDLPKSTLGVDVENDYNPRYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L ++ ++ + LA+DPDREGEAI+WH+ ++L+ ++ R+VF+EIT+
Sbjct: 62 ELLDKLRRKAKKSDKIYLATDPDREGEAISWHLAKVLKIEEDKK-----CRIVFNEITKN 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+IK A++ R +D+NLV A ARR LD L+G+ ISP+LWRK+ SAGRVQS AL +IC
Sbjct: 117 AIKSAIKKPRIVDSNLVNAQQARRVLDRLVGYKISPILWRKVKWGLSAGRVQSVALKMIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DR+ IDEFKP+EYW++E +L K + L S ++SIG+ E +I
Sbjct: 177 DRQKAIDEFKPEEYWSIECLLSKSARNK-------PFLVKLHSANNKKISIGNKEETDNI 229
Query: 589 EQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+++ +F ++K+ K+S KNP P+ TSTLQQDA +LNFS TM +AQ LYEGV+
Sbjct: 230 IKELEKNDF-LVKDIKKSTKNKNPLAPFTTSTLQQDAYKRLNFSTKKTMSIAQILYEGVE 288
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GLITYMRTD + IS+E+ + I +G P + PR FK KN Q+AH
Sbjct: 289 IKGHGTIGLITYMRTDSVRISEESQNNAKEYIKSNFGEEFIP-KAPRN-FKGKKNIQDAH 346
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT I P L +D KLY+LIW+R MA QM + I + I N S F
Sbjct: 347 EAIRPTYIDVTPEEARSSLKDDQFKLYNLIWNRFMASQMASCVMNTITLIIENGIYS--F 404
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S ++F GF Y Y +EEND + + L D LY E++ QH
Sbjct: 405 RATGSSIKFPGFMKVY--------NYTSDEENDDIK----IPDLNKEDILYKKEIKGNQH 452
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPA++SE SLVK LEE GIGRPSTYA + L DR Y+ + L P G +V+
Sbjct: 453 FTQPPAKFSEASLVKTLEENGIGRPSTYAPIISTLLDRKYIERDKKTLNPTELGNIVNNI 512
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+S YF E+ D FTA+ME +LDN+ G W ++ +++ A+ + ++
Sbjct: 513 VSEYFKEIIDIEFTAEMEHKLDNIEEGKENWNKVVDEFYKPLEVSIDIAEK-EVSKITIE 571
Query: 948 LEKT-----------------FGDSL----FASLPNK-------DRSCPVCGEGTLIFKV 979
E T FGD L + N D +CP C G ++ +
Sbjct: 572 DEVTDIKCDKCGKFMVIKHGRFGDFLACPGYPECKNTKPIVQELDVACPKCS-GKILVRK 630
Query: 980 SRFGAGYFIGCNQHPRCNYIA 1000
SR G +F GC+ +P C++++
Sbjct: 631 SRKGRKFF-GCSNYPECDFVS 650
>gi|418948861|ref|ZP_13501143.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-157]
gi|375370577|gb|EHS74381.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-157]
Length = 675
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKS------KFNAKFLHYKNK---PFKLKTKKDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKVEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C +CG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEICG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|87161325|ref|YP_493840.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194958|ref|YP_499758.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|151221372|ref|YP_001332194.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus str.
Newman]
gi|161509416|ref|YP_001575075.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|258452549|ref|ZP_05700555.1| DNA topoisomerase I [Staphylococcus aureus A5948]
gi|282920494|ref|ZP_06328215.1| DNA topoisomerase I [Staphylococcus aureus A9765]
gi|304381186|ref|ZP_07363839.1| DNA topoisomerase TopA [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|384861844|ref|YP_005744564.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|417649437|ref|ZP_12299236.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21189]
gi|418658321|ref|ZP_13220053.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-111]
gi|422742367|ref|ZP_16796373.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus MRSA177]
gi|422745518|ref|ZP_16799457.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus MRSA131]
gi|87127299|gb|ABD21813.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202516|gb|ABD30326.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|150374172|dbj|BAF67432.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus str.
Newman]
gi|160368225|gb|ABX29196.1| DNA topoisomerase A [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257859767|gb|EEV82609.1| DNA topoisomerase I [Staphylococcus aureus A5948]
gi|282594156|gb|EFB99143.1| DNA topoisomerase I [Staphylococcus aureus A9765]
gi|302751073|gb|ADL65250.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|304340169|gb|EFM06110.1| DNA topoisomerase TopA [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|320140933|gb|EFW32780.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus MRSA131]
gi|320144351|gb|EFW36117.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus MRSA177]
gi|329727806|gb|EGG64257.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21189]
gi|375038873|gb|EHS31828.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-111]
Length = 691
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 6 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 65
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 66 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 121 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 181 ENEIRNFKPEEYWTIEGEFRYKKS------KFNAKFLHYKNK---PFKLKTKKDVEKITA 231
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 232 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 291
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 292 QGTIGLITYMRTDSTRISDTAKVEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 347
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 348 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 406 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 456 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 516 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 564
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C +CG ++ K+ R+G F+ C+ P C
Sbjct: 565 MEKIEIKDEPAGED--CEICG-SPMVIKMGRYGK--FMACSNFPDC 605
>gi|421860574|ref|ZP_16292680.1| topoisomerase IA [Paenibacillus popilliae ATCC 14706]
gi|410829760|dbj|GAC43117.1| topoisomerase IA [Paenibacillus popilliae ATCC 14706]
Length = 696
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 271/679 (39%), Positives = 377/679 (55%), Gaps = 61/679 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES KAK I YLG Y V S GHVRDL V + +F+ + +
Sbjct: 4 SLVIVESPAKAKTIGKYLGSKYIVKASMGHVRDLPKSQIGVEIEQNFAPKYITIRGKGSV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A + + LA+DPDREGEAIAWH+ L+ L E+ T RVVF+EIT+ ++
Sbjct: 64 LKELKDARKKVKKVYLAADPDREGEAIAWHLAHALE----LDESET-CRVVFNEITKQAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+I+ +LV A ARR LD L+G+ ISPLLW+K+ SAGRVQS ++ LI DR
Sbjct: 119 KDAFKTPRQINMDLVHAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVSVKLIIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F P+EYWT+ A L+ +S F + + + + +N+ E ++
Sbjct: 179 ENEINAFIPEEYWTITARLEAGKSKFEARFY---GMNNVKKELVNE------AEVNEVLA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F V + ++ +R P+ TS+LQQ+AA KLNF A TM +AQ+LYEGV L
Sbjct: 230 ALHKQAFVVSEVKEKERLRHPSAPFTTSSLQQEAARKLNFRAAKTMSVAQQLYEGVDLGK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A +E + I ++G+ + PE PR+Y KK NAQ+AHEAI
Sbjct: 290 EGTVGLITYMRTDSTRISPTAQEEAKEYIGSQFGAEYVPE-TPRQYVKKAANAQDAHEAI 348
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT + R P + L+ D +LY L+W R +A QM A + + VD+ D + FR++
Sbjct: 349 RPTSVLRSPDQMKPFLNRDQHRLYKLVWERFVASQMTSAVMDTMTVDLQAGD--VAFRAN 406
Query: 771 CSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S+V F GF Y E D G + E+E+ +L L+TGD L +E KQH T
Sbjct: 407 GSKVRFPGFMKVYVEGNDDGVV---EDEK--------LLPLLQTGDKLKQEAIEPKQHFT 455
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LVK LEELGIGRPSTYA TL+ +Q R YV ++ + P G +V +
Sbjct: 456 QPPPRYTEARLVKTLEELGIGRPSTYAPTLETIQKRGYVAMEDKKFVPTELGELVIQQME 515
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCA------------- 936
+F E+ D FTA ME +LD+V G +W +L D++ F A
Sbjct: 516 EFFPEILDVEFTAHMEEDLDHVEEGQQDWVEVLNDFYESFEKRLQVAEEEMKEVEIEDEV 575
Query: 937 -----QSLHIHQVEKMLEKTFGDSLFAS-LPN--------KDR--SCPVCGEGTLIFKVS 980
+ H V KM FG L S P+ KD +CP C EG L+ + S
Sbjct: 576 SDEICEKCERHFVYKM--GRFGKFLACSGFPDCRNTRPIVKDTGVACPKCKEGKLVERRS 633
Query: 981 RFGAGYFIGCNQHPRCNYI 999
+ G F GC+++P C+Y+
Sbjct: 634 KKGR-IFYGCDRYPDCDYV 651
>gi|417653215|ref|ZP_12302949.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21193]
gi|417797251|ref|ZP_12444449.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21305]
gi|329733597|gb|EGG69925.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21193]
gi|334267299|gb|EGL85763.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus 21305]
Length = 689
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKS------KFNAKFLHYKNK---PFKLKTKKDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI + I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGE--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|167771635|ref|ZP_02443688.1| hypothetical protein ANACOL_03007 [Anaerotruncus colihominis DSM
17241]
gi|167666275|gb|EDS10405.1| DNA topoisomerase I [Anaerotruncus colihominis DSM 17241]
Length = 706
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 271/679 (39%), Positives = 386/679 (56%), Gaps = 56/679 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG +EV+ S GHVRDL V D DF+ ++
Sbjct: 6 NLVIVESPAKAKTIKKYLGKDFEVVASMGHVRDLPKSKFGVDVDHDFTPMYVDIKGKEDL 65
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A ++ + LA+DPDREGEAI+WH+ +ML D N RV F+EIT++ +
Sbjct: 66 IKDLKKAAKKSDAIFLATDPDREGEAISWHLAQMLGV-DMNQPN----RVTFNEITKSGV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + R ID LV A ARR LD ++G+ ISP LWRK+ SAGRVQS A+ +I DR
Sbjct: 121 KYGMDHPRMIDVKLVDAQQARRVLDRIVGYKISPFLWRKVRKGLSAGRVQSVAVRIIMDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FK QEYW+++A L K H+ FPA L K+L +I A++I +
Sbjct: 181 EEEIRAFKQQEYWSIDAKLAAK-GHAKK--PFPAKLYAIDGKKLELTAIPDEKRAREIVE 237
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++ A++ ++ N K+ + RK+P P +ITSTLQQ+A+ +L + + TMK+AQ+LYEGV++
Sbjct: 238 SLDGADY-IVSNVKKGVRRKSPAPPFITSTLQQEASRRLGYQSRRTMKVAQELYEGVEIE 296
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
A GLITYMRTD L ISDEAA++ + I + YG + P R+ FK KNAQ+AHEA
Sbjct: 297 GIGATGLITYMRTDSLRISDEAAEQAKIYITDTYGKEYLP--ATRRVFKTKKNAQDAHEA 354
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRP+D P + L + KLY LIW R +A QM A + + VDI A+ +F++
Sbjct: 355 IRPSDPSLTPDRVKKDLTAEQYKLYKLIWERFIASQMANALLDTVAVDIEAAN--CLFKA 412
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S V+F GF YE E+++ D E A L L+ G+ L L E+ QH T
Sbjct: 413 SGFTVKFDGFTVLYE----------ESKDTD-DENTASLPPLEAGNVLTLKELTPNQHFT 461
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPPARY+E SL+K LEE GIGRPSTYA T+ + R YV +++ L P G + + +
Sbjct: 462 QPPARYTEASLIKTLEENGIGRPSTYAPTITTILARGYVERENKSLKPTALGEVTTKLME 521
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQS------LHIHQ 943
F+++ D +FTA+ME LD V G ++ +L ++ F + A+ + +
Sbjct: 522 EQFAKIVDVTFTANMEKTLDEVEEGNVDYPKMLSGFYDDFMTTLEQAEKNMDGTRVKVPD 581
Query: 944 VE----------KMLEKT--FGDSL----FASLPNKDRS-------CPVCGEGTLIFKVS 980
E KM+ KT FG L F N + CPVCG G ++ K S
Sbjct: 582 EETDIVCELCGRKMVIKTGRFGKFLACPGFPECRNTKKIVKETGGLCPVCG-GKVLAKKS 640
Query: 981 RFGAGYFIGCNQHPRCNYI 999
+ G GY+ GC +P+C ++
Sbjct: 641 KNGKGYY-GCEHNPQCQFM 658
>gi|434397145|ref|YP_007131149.1| DNA topoisomerase I [Stanieria cyanosphaera PCC 7437]
gi|428268242|gb|AFZ34183.1| DNA topoisomerase I [Stanieria cyanosphaera PCC 7437]
Length = 879
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 303/848 (35%), Positives = 444/848 (52%), Gaps = 98/848 (11%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPD--------------DD 396
++V+VES TKA+ I+ YL Y+V S GHVRDL + + + P+ D
Sbjct: 3 TLVIVESPTKARTIRNYLPSSYQVEASMGHVRDLPSSADEIPPECKDRPWANLGVNVEDQ 62
Query: 397 FSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENIT 456
F ++ +P + ++ +K AL AE LILA+D DREGE+I+WH++E+L+ + +
Sbjct: 63 FQPIYVIPKSKKKIVQELKNALKQAEELILATDEDREGESISWHLLELLKPK------VP 116
Query: 457 VARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSA 516
V R+VFHEIT +I+ AL+ RE+D +LV A RR LD L G+ +SPLLW+K+ SA
Sbjct: 117 VKRMVFHEITREAIQKALKNCREVDQDLVHAQETRRILDRLYGYTLSPLLWKKIKRGLSA 176
Query: 517 GRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRL-- 574
GRVQS A+ L+ +RE E F+ +YW ++A+L++++S F A L K+L
Sbjct: 177 GRVQSVAVRLLVERERERRAFQSGDYWDLKAILEQEKSR------FEAKLISLAGKKLAT 230
Query: 575 --------NQLSIG------SHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTL 620
+++ G + EA +++++ + V K +++ R P+ TSTL
Sbjct: 231 GSDFDPNTGRITAGRDVVLLNEAEANALKERLIDKTWTVSKTEEKATKRNPAPPFTTSTL 290
Query: 621 QQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIF 680
QQ+A KL SA TM +AQKLYE G ITYMRTD +H+SD+A RS +
Sbjct: 291 QQEANRKLGISARETMSVAQKLYE---------QGYITYMRTDSVHLSDQAIAAARSCVE 341
Query: 681 ERYGSHH-APEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWS 739
+ YG + +P+ PR+Y K K+AQEAHEAIRP +GL + LY LIW
Sbjct: 342 QMYGKEYLSPK--PRQYSTKSKSAQEAHEAIRPAGSSFRTPQETGLSGRE-FALYDLIWK 398
Query: 740 RTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEEN 799
RT+A QM A + QI V+I D VFRSS R++F GF AY + EN+E
Sbjct: 399 RTVASQMAEARLTQITVNIDVED--AVFRSSGKRIDFPGFFRAYVEGSDDPEAALENQE- 455
Query: 800 DRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTL 859
IL LK GD E+E H TQPPARY+E SLVK LE G+GRPSTYAS +
Sbjct: 456 ------MILPPLKEGDRPNCKELEAIGHETQPPARYTEASLVKTLESEGVGRPSTYASII 509
Query: 860 KVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWK 919
+ DR YV ++++ L P F V++ L +F ++ D SFT+ ME LD ++ G +W
Sbjct: 510 GTIIDRGYVQMRNKALVPTFTAFAVTSLLEQHFPDLVDSSFTSKMEQTLDEIATGEAQW- 568
Query: 920 GLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKV 979
+ Y +F S ++ + EK ++ S+ L N D + ++
Sbjct: 569 ---IPYLKKFYSGQEGLET-QVQAGEKEIDPASAKSI--QLENLDATV----------RI 612
Query: 980 SRFGAGYFIGCNQHPRCNYIAKTLYGDD---DEEDTLQRNTNVDEPKLIGHHPASKEKVL 1036
++G + I L D ++ ++L R ++ P +G HP + E +
Sbjct: 613 GKYGPYIEVTNGDEVVKTSIPLDLTPADLSPEQIESLIRQ-KIEGPDKVGLHPETGEPIF 671
Query: 1037 LKSGPYGFYVQLGEDRTGYLPKRASVSHIKDV--DSITLEDALELLRYPVNLGNHPKDGQ 1094
L +GPYG Y+QLGE +T PK VS K V D + +E A+ LL P LG HP+ G
Sbjct: 672 LLTGPYGPYLQLGE-KTEKNPKPKQVSLPKGVTADDVNVEMAVGLLSLPRMLGVHPETGG 730
Query: 1095 PIMLRLARAGFSVRH------RRTIASVPKNMKPND----VTLEKALEFLSGKDVRRCGR 1144
I L R G V H + +++K D V+ E+A+E L+ R G
Sbjct: 731 NIKASLGRFGPYVVHEYKDEVEKKAKKDYRSLKAEDDVLTVSFERAIELLAQPKRSRSGG 790
Query: 1145 PKGKPKRE 1152
KP +E
Sbjct: 791 STKKPLKE 798
>gi|254457433|ref|ZP_05070861.1| DNA topoisomerase I [Sulfurimonas gotlandica GD1]
gi|373867276|ref|ZP_09603674.1| DNA topoisomerase I [Sulfurimonas gotlandica GD1]
gi|207086225|gb|EDZ63509.1| DNA topoisomerase I [Sulfurimonas gotlandica GD1]
gi|372469377|gb|EHP29581.1| DNA topoisomerase I [Sulfurimonas gotlandica GD1]
Length = 741
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 256/650 (39%), Positives = 368/650 (56%), Gaps = 52/650 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMV--WEVPSAAW 408
++++VES KAK I+ +LG YEV+ S GH+RDL + D+D +V + V
Sbjct: 2 NLIIVESPAKAKTIKNFLGKEYEVIASKGHIRDLPKSRFGITVDEDNQLVPAYSVAKENA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+K IK A+ + +A+D DREGEAI WHI +++ + R+VFHEIT+
Sbjct: 62 ATVKEIKDLAKKADVIYIATDEDREGEAIGWHIAHAIKRDPE-----ELPRIVFHEITKT 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I AL++AR+ID N+V A ARR LD ++G+ +SPLL K+ S GRVQS+ L L+
Sbjct: 117 AINHALESARKIDMNMVNAQQARRMLDRVVGYKLSPLLASKIQKGLSGGRVQSSTLKLVV 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI F P EYW+++ + A L + +L++LSI + +A+ I
Sbjct: 177 DREREIKAFIPVEYWSIDTLFKT---------DIEATLIAHKGDKLSKLSIENKNDAEAI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ +++ F + K + P P++TSTLQQ A++KL F+ TM +AQ LYEGV+
Sbjct: 228 TKSVSADTFVISKIETKQRKTSTPPPFMTSTLQQTASSKLGFTPKKTMMVAQALYEGVKT 287
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
PDGT+ G+ITYMRTD L+++ EA +R +I RYG + PEE P+ Y KK K AQEAHE
Sbjct: 288 PDGTS-GVITYMRTDSLNMAAEAVGAVRGIIESRYGKKYLPEE-PKFYGKKAKGAQEAHE 345
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + P + L D +KLY LI+ R MACQM A Q Q I +E+ +R
Sbjct: 346 AIRPTMLHFSPEVAQSFLKADEIKLYRLIYERFMACQMNDAMFEQ-QSIIFEGEEN-EYR 403
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+S ++ F GF A E+ D+ +L +LK G+ + + +QH
Sbjct: 404 ASGRKLIFDGFYAV-----------TGTEDKDK-----LLPTLKEGEKAEIQTINPEQHF 447
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PPARYSE SL+KKLE G+GRPSTYA T+ L R YVT++ + + P V+ L
Sbjct: 448 TEPPARYSEASLIKKLESEGVGRPSTYAPTIATLSGRTYVTIEKKQIIPTEIAFTVTEML 507
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
F+ + D SFTA+ME +LD +S G +W+ LL D++ F + QV +
Sbjct: 508 EKNFANIVDISFTANMEEKLDEISEGENDWQKLLSDFYFPF-----------MDQVAEGK 556
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK L L R+CP CGE L+ + RFG F+ C+ P+C Y
Sbjct: 557 EKIISLKLAKPL---GRTCPKCGEHELLLRSGRFGN--FVACSGFPKCKY 601
>gi|309791553|ref|ZP_07686052.1| DNA topoisomerase I [Oscillochloris trichoides DG-6]
gi|308226413|gb|EFO80142.1| DNA topoisomerase I [Oscillochloris trichoides DG6]
Length = 778
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 262/652 (40%), Positives = 374/652 (57%), Gaps = 38/652 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G +V+VES KAK IQ YLG Y V S GHVRDL + S+ +++F+ V+EV
Sbjct: 2 GDKLVIVESPAKAKTIQKYLGRGYRVTSSMGHVRDLPKKDLSIDLENNFAPVYEV--TKQ 59
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+ ++ A+ GAE + LA+DPDREGEAIAWHI + + + + + RVVF EIT
Sbjct: 60 KVVSELRQAVRGAEAIYLATDPDREGEAIAWHITQAVN----VPKRTPIFRVVFQEITRN 115
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+++ A+ R+ID+NLV A ARR LD L+G+ +SPLLW K+ SAGRVQS A+ LI
Sbjct: 116 AVQQAINNPRQIDSNLVDAQQARRVLDRLVGYQLSPLLWDKVKRGLSAGRVQSVAVRLIV 175
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE I+ F QEYWT+EA L K+ S L SF A L K+L++ ++ +A+ I
Sbjct: 176 EREQAIEAFVAQEYWTIEADLSKQGS-DLKRDSFRAVLIERDGKKLDKFAVTKQDQAESI 234
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ A ++V K +R R P+ TSTLQQ+A KL F A TM LAQ+LYEGV +
Sbjct: 235 VADLRDARYRVQKIVRRDKRRSAAPPFTTSTLQQEAGRKLGFGAKKTMMLAQRLYEGVDI 294
Query: 649 P-DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
D GLITYMRTD +++ EA +E R +I YG + PE+ P Y + K AQEAH
Sbjct: 295 GGDEGTVGLITYMRTDSTNVAAEAQQEARQVIAAMYGDTYLPEKPP-TYKTRAKAAQEAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGN------A 761
EAIRPT R P ++ L+ D L+LY LIW R +A QM PA VDIG
Sbjct: 354 EAIRPTSSARHPDAVASKLERDLLRLYDLIWKRFLASQMAPAVFDSTTVDIGAFTNPQAT 413
Query: 762 DESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGE 821
FR++ S ++F GF A Y + +E+E+++R L L + L L
Sbjct: 414 SAPYTFRATGSVLKFPGFLAVY---NVSLDEGEEDEDSERR-----LPPLDEAEVLNLLA 465
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRG 881
+ QH T+PP R++E SLVK LE+LGIGRPSTYAS + +Q+R YV + + L P G
Sbjct: 466 LLPIQHFTEPPPRFTEASLVKDLEQLGIGRPSTYASIISTIQEREYVELAEKKLVPTTLG 525
Query: 882 RMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI 941
R+V+ L +F ++ DY FT+ +E +LD+++ G W +L +++ F + A++ +
Sbjct: 526 RVVTDLLVQHFPKIVDYDFTSALEQQLDDIAEGSKRWVPVLHEFYGPFQNTLQNAKN-EM 584
Query: 942 HQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQH 993
V++ E+ D + CP CG+ L K R G F+ C+++
Sbjct: 585 RNVKR--EEILSDIV----------CPKCGQANLAIKFGR--NGEFLACSRY 622
>gi|172036150|ref|YP_001802651.1| DNA topoisomerase I [Cyanothece sp. ATCC 51142]
gi|354552950|ref|ZP_08972257.1| DNA topoisomerase I [Cyanothece sp. ATCC 51472]
gi|171697604|gb|ACB50585.1| DNA topoisomerase I [Cyanothece sp. ATCC 51142]
gi|353554780|gb|EHC24169.1| DNA topoisomerase I [Cyanothece sp. ATCC 51472]
Length = 881
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 299/845 (35%), Positives = 442/845 (52%), Gaps = 97/845 (11%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRP--------------DDD 396
++V+VES TKA+ I+ YL Y+V S GHVRDL A + + P ++
Sbjct: 3 TLVIVESPTKARTIRNYLPQGYQVEASMGHVRDLPASADEIPPSYKDKDWANLGVNVENG 62
Query: 397 FSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENIT 456
F ++ +P ++ +K AL A+ LILA+D DREGE+I+WH++++L+ + +
Sbjct: 63 FEPIYVIPKGKKKVVQGLKSALKSADELILATDEDREGESISWHLLQLLKPK------VP 116
Query: 457 VARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSA 516
+ R+VFHEIT +I+ +L+ R+ID NLV A RR LD L G+ +SPLLW+K+ SA
Sbjct: 117 IKRMVFHEITREAIQKSLKNCRDIDENLVHAQETRRILDRLYGYTLSPLLWKKIAWGLSA 176
Query: 517 GRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRL-- 574
GRVQS A+ L+ RE E F+ YW ++A+L+K+ S F A L K++
Sbjct: 177 GRVQSVAVRLLVQRERERLAFQSGGYWDLKALLEKENS------PFEAKLITLGGKKIAT 230
Query: 575 --------------NQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTL 620
+ + + EA ++++++ + V K +++ RK P+ TSTL
Sbjct: 231 GSDFDPNTGKIAQGRDVVLLNEQEANALKERLDGKTWTVTKKEEKATTRKPYAPFTTSTL 290
Query: 621 QQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIF 680
QQ++ KL+ SA TM++AQKLYE G ITYMRTD +H+SDEA K R+ +
Sbjct: 291 QQESNRKLSISARDTMRIAQKLYE---------EGYITYMRTDSVHLSDEAIKAARNCVE 341
Query: 681 ERYGSHH-APEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWS 739
E+YG + +P+ PR+Y K K AQEAHEAIRP R +GL ++ LY LIW
Sbjct: 342 EKYGKEYLSPK--PRQYTTKSKGAQEAHEAIRPAGNRFRTPQETGLSGQE-FALYDLIWK 398
Query: 740 RTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAY----EDVDAGAIRYKE 795
RT+A QM A + QI V + D FRSS R++F GF AY +D DA E
Sbjct: 399 RTVASQMANAKLTQISVLLDVEDAG--FRSSGKRIDFPGFFRAYVEGSDDPDAAI----E 452
Query: 796 NEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTY 855
++E IL L GD E+++ H TQPPARY+E SLVK LE G+GRPSTY
Sbjct: 453 DQE-------VILPPLAEGDHPDCKELDVLGHETQPPARYTEASLVKMLEGEGVGRPSTY 505
Query: 856 ASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGL 915
AS + ++DR Y ++S+ L P F V L ++F ++ D FT+ ME LD ++ G
Sbjct: 506 ASIIGTIRDRGYAQMRSKALVPTFTAFAVVNLLENHFPDLVDTKFTSKMEQTLDEIATGE 565
Query: 916 TEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTL 975
+W L ++S T + + + Q++ + K +L N D +
Sbjct: 566 AQWVPYLQKFYSGEEGLDTQVK-VRVDQIDPGVAKAI------NLDNLDATV-------- 610
Query: 976 IFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQR--NTNVDEPKLIGHHPASKE 1033
K+ +FG + + I L D + + + + P+ +G HP + E
Sbjct: 611 --KIGKFGPYVEVLDGEEKITASIPADLTPSDLNPEQVNKLLKQKTEGPEKLGLHPETGE 668
Query: 1034 KVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKD 1092
+ + G YG YVQLGE PKRAS+ V+ +TLE A+ LL P LG HP+
Sbjct: 669 PIYVLIGSYGPYVQLGEATEENKKPKRASLPKGTSVEDVTLEMAVGLLALPRLLGTHPET 728
Query: 1093 GQPIMLRLARAGFSVRHRRTIASVP-KNMKPND----VTLEKALEFLSGKDVRRCGRPKG 1147
G I + R G V H + + +++K D VTLE+ALE L+ R G
Sbjct: 729 GAKIKASIGRFGPYVVHDQGKSGKDYRSLKKEDDVLTVTLERALELLAQPKKGRGGGRTK 788
Query: 1148 KPKRE 1152
KP +E
Sbjct: 789 KPLKE 793
>gi|319789380|ref|YP_004151013.1| DNA topoisomerase I [Thermovibrio ammonificans HB-1]
gi|317113882|gb|ADU96372.1| DNA topoisomerase I [Thermovibrio ammonificans HB-1]
Length = 698
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 270/699 (38%), Positives = 377/699 (53%), Gaps = 63/699 (9%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
GK +++VES KAK IQ YLG + V S GHV DL + V + F +
Sbjct: 2 GKKLIIVESPAKAKTIQKYLGKDFIVKASMGHVIDLPEKEFGVDIEKGFKPKYTTIKGKE 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
LK IK A ++ + LA+DPDREGEAI+WHI L++ +NI R+ FHEIT+
Sbjct: 62 KVLKEIKEAAKKSDEVYLATDPDREGEAISWHIANALKR--VKKDNIY--RIRFHEITKR 117
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I+ A++ ID V A ARR LD ++G+ ISPLL R+ SAGRVQS AL LIC
Sbjct: 118 AIQEAVKNPDTIDEKKVNAQQARRILDRIVGYTISPLLSRRFKRALSAGRVQSVALRLIC 177
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI +F P+EYWTVEA K PA L KRL + I + AK++
Sbjct: 178 DREEEIRKFVPKEYWTVEAKFAKGSEE------LPAKLWKVDGKRLEKFDIPNEKAAKEL 231
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
++ A F V K ++ RK P P+ITSTLQQ+A+ + F A TM++AQ+LYEG+ L
Sbjct: 232 VERAKGAAFSVAKVERKERRRKPPAPFITSTLQQEASRRFGFPAKVTMQIAQELYEGIDL 291
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
GLITYMRTD +SDEA KE+R I E +G ++ P+ KK K+AQ+AHE
Sbjct: 292 -GSERVGLITYMRTDSTRVSDEAVKEVREFIKEHFGQNYLPKTKRSYETKKPKSAQDAHE 350
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L + KLY LIW R +A QM+ A + VD+ + FR
Sbjct: 351 AIRPTSVFRTPESVKPYLTPEQFKLYDLIWRRFVASQMKDAVFNTVSVDVEGG--GLTFR 408
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
S+ S ++ GF Y E EE +L L G+ L L EV+ QH
Sbjct: 409 STGSTLKEEGFLKVYPV---------EVEEK-------LLPELNKGEALELKEVKGVQHF 452
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RY+EG+LVK LEE G+GRPSTYA+ + + R YV + + L P G +++ L
Sbjct: 453 TEPPPRYTEGTLVKALEEEGVGRPSTYATIISNIIQRGYVAKEKQKLKPTELGEFINSLL 512
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
F ++ D FTA++E ELD + G EWK LL +++ F + + + EK L
Sbjct: 513 KKLFPKIVDVKFTANVEEELDKIEEGQKEWKELLKEFY--FGEFKEL-----LDRAEKEL 565
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
++ G+ + R CP CG L+ R+GA FI C+ +P C Y
Sbjct: 566 KQIKGEEI-------GRECPRCG-APLVKIHGRYGA--FIACSAYPECTY---------- 605
Query: 1009 EEDTLQRNTNVDEP-KLIGHHPASKEKVLLKSGPYGFYV 1046
+ + +EP KL P ++++K+G +G ++
Sbjct: 606 ------KESIKEEPQKLDRKCPECGGELVIKNGKFGRFI 638
>gi|399888421|ref|ZP_10774298.1| DNA topoisomerase I [Clostridium arbusti SL206]
Length = 704
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 261/680 (38%), Positives = 374/680 (55%), Gaps = 59/680 (8%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+++V+VES KAK I YLG + V S GHVRDL + V +++++ +
Sbjct: 2 GQNLVIVESPAKAKTIGKYLGKNFVVEASMGHVRDLPKSTLGVDVENNYNPRYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L ++ + ++ + LA+DPDREGEAI+WH+ ++L+ D R+VF+EIT+
Sbjct: 62 ELLDKLRKSAKKSDKIYLATDPDREGEAISWHLAKVLKIDDDKK-----CRIVFNEITKN 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+IK A++ R++D NLV A ARR LD L+G+ ISP+LWRK+ SAGRVQS AL +IC
Sbjct: 117 AIKSAIKNPRKVDLNLVDAQQARRVLDRLVGYKISPILWRKVKWGLSAGRVQSVALKMIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE I++FKP+EYW++E +L K E F L S ++SI + EA I
Sbjct: 177 DREKAINDFKPEEYWSIECLLSKSE-------KFKPFLVKLHSANNKKMSISNKDEADAI 229
Query: 589 EQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+++ F ++ N K+S KNP P+ TSTLQQDA +LNFS TM +AQ LYEG++
Sbjct: 230 IKQLEPKEF-IVNNIKKSTKNKNPLAPFTTSTLQQDAYKRLNFSTKRTMSIAQALYEGIE 288
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GLITYMRTD + IS+EA + I +G P + PR FK KN Q+AH
Sbjct: 289 VKGHGTVGLITYMRTDSVRISEEAQNGAKEYIKSNFGEEFIP-KTPR-LFKGKKNIQDAH 346
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT I P L +D KLYSLIW+R MA QM + I + I N S F
Sbjct: 347 EAIRPTYINIAPEEARSSLKDDQFKLYSLIWNRFMASQMASCIMDTITLIIKNGIYS--F 404
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S ++F GF Y Y +EE++ + + +L D L+ E++ QH
Sbjct: 405 RATGSSIKFPGFMKVY--------NYSSDEEDNDIK----IPALNENDILFKKEIKGNQH 452
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPA++SE SLVK LEE GIGRPSTYA + L DR Y+ + L P G +V+
Sbjct: 453 FTQPPAKFSEASLVKTLEENGIGRPSTYAPIISTLLDRKYIQRDKKTLTPTELGNIVNNI 512
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQ---------- 937
+S YF E+ D FTA+ME +LDNV G W ++ ++ A+
Sbjct: 513 VSEYFKEIIDIEFTAEMENKLDNVEEGKDNWNSVVDKFYKPLEVSIDIAEKEVAKITIED 572
Query: 938 ---SLHIHQVEKML---EKTFGDSL----FASLPNK-------DRSCPVCGEGTLIFKVS 980
+ + K + FGD L + N D +CP CG G ++ + S
Sbjct: 573 EVTDIKCDKCGKFMVIKHGRFGDFLACPGYPECKNTKPIVEELDVACPKCG-GKILVRKS 631
Query: 981 RFGAGYFIGCNQHPRCNYIA 1000
+ G +F GC+ +P C++++
Sbjct: 632 KKGRKFF-GCSNYPECDFVS 650
>gi|15895061|ref|NP_348410.1| DNA topoisomerase I [Clostridium acetobutylicum ATCC 824]
gi|337737002|ref|YP_004636449.1| DNA topoisomerase I [Clostridium acetobutylicum DSM 1731]
gi|384458510|ref|YP_005670930.1| DNA topoisomerase I [Clostridium acetobutylicum EA 2018]
gi|15024756|gb|AAK79750.1|AE007687_7 Topoisomerase I [Clostridium acetobutylicum ATCC 824]
gi|325509199|gb|ADZ20835.1| DNA topoisomerase I [Clostridium acetobutylicum EA 2018]
gi|336292711|gb|AEI33845.1| DNA topoisomerase I [Clostridium acetobutylicum DSM 1731]
Length = 697
Score = 441 bits (1134), Expect = e-120, Method: Compositional matrix adjust.
Identities = 268/681 (39%), Positives = 374/681 (54%), Gaps = 61/681 (8%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KAK I YLG Y V S GHVRDL + V DD+++ +
Sbjct: 2 GQKLVIVESPAKAKTIGKYLGKNYIVEASMGHVRDLPKSTLGVDIDDNYNPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L +K A + + LA+DPDREGEAI+WH+ ++L+ ++ R+ F+EIT+
Sbjct: 62 ELLDKLKKAAKKCDKIYLATDPDREGEAISWHLSKVLKIDESEK-----CRIEFNEITKN 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+IK A++ R+I+ NLV A ARR LD L+G+ ISP+LWRK+ SAGRVQS AL ++C
Sbjct: 117 AIKTAIKCPRKININLVDAQQARRVLDRLVGYKISPILWRKVKWGLSAGRVQSVALKMVC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
RE I++FKP+EYW+++A + K+ F LT F+ K++ I + E + I
Sbjct: 177 SREKLINDFKPEEYWSIDAQVYKQSKKD----KFTIRLTSFKGKKI---KINNEEENEQI 229
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
I F+V +N K KN P + TSTLQQDA KLNFS TM +AQ+LYEG+
Sbjct: 230 INSIKKDEFKV-ENVKEGTKNKNTLPPFTTSTLQQDANKKLNFSTKKTMSVAQQLYEGID 288
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GLITYMRTD + +S EA + I YG + P K +K KN Q+AH
Sbjct: 289 VKGHGTIGLITYMRTDSVRVSKEAQEAANDYILNEYGKEYLPPSP--KLYKSKKNIQDAH 346
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT I P M+ L +D KLY+LIWSR MA QM + + ++I N + + F
Sbjct: 347 EAIRPTYIELTPGMVKSSLKDDQYKLYNLIWSRFMASQMANCILNTLSIEIKNGEYT--F 404
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+S S V+F GF Y K N E D H L L+ GD L+ +++ KQH
Sbjct: 405 RASGSNVKFEGFMRVY----------KYNIEEDEHNEKIPL--LQKGDLLHTDKIDGKQH 452
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPAR++E SLVK LEE GIGRPSTYA + L DR YV + + ++P G +V
Sbjct: 453 FTQPPARFTEASLVKTLEENGIGRPSTYAPIISTLIDRKYVKKEKKAIFPTELGNIVDNI 512
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
LS YF ++ D FTADME +LDNV G WK ++ +Y+ A+ + ++
Sbjct: 513 LSDYFKQIIDIEFTADMENKLDNVEEGKENWKEIVDEYFKPLKEAIDIAEK-EVAKITIE 571
Query: 948 LEKT-----------------FGDSLFA-SLPNKDRS----------CPVCGEGTLIFKV 979
E T FGD L P+ + CP CG G +I +
Sbjct: 572 DEVTDIKCDKCGRNMVIKHGRFGDFLACPGYPDCKNTKPIVEKLKVKCPKCG-GDVIVRR 630
Query: 980 SRFGAGYFIGCNQHPRCNYIA 1000
S+ G +F GC+ +P C++++
Sbjct: 631 SKKGRKFF-GCSNYPDCDFVS 650
>gi|67922040|ref|ZP_00515556.1| DNA topoisomerase I [Crocosphaera watsonii WH 8501]
gi|67856256|gb|EAM51499.1| DNA topoisomerase I [Crocosphaera watsonii WH 8501]
Length = 880
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 306/846 (36%), Positives = 441/846 (52%), Gaps = 110/846 (13%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSG--------------SVRPDDD 396
++V+VES TKA+ I+ YL Y+V S GHVRDL A + V +D
Sbjct: 3 TLVIVESPTKARTIRNYLPKGYQVEASMGHVRDLPASASEIPASYKDKDWANLGVNVEDS 62
Query: 397 FSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENIT 456
F ++ +P ++ +K AL A+ LILA+D DREGE+I+WH++++L+ + +
Sbjct: 63 FEPIYVIPKGKKKVVQGLKSALKSADELILATDEDREGESISWHLLQLLKPK------VP 116
Query: 457 VARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSA 516
+ R+VFHEIT +I+ +L+ R+ID NLV A RR LD L G+ +SPLLW+K+ SA
Sbjct: 117 IKRMVFHEITREAIQKSLKNCRDIDENLVHAQETRRILDRLYGYTLSPLLWKKIAWGLSA 176
Query: 517 GRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRL-- 574
GRVQS A+ L+ RE E F+ YW ++A+L+K++S F A L + K++
Sbjct: 177 GRVQSVAVRLLVKRERERLAFQSGGYWDLKALLEKEKS------PFEAKLITLEGKKVAT 230
Query: 575 --------------NQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTL 620
++ + + EA ++ K+ + V K +++ RK P+ TSTL
Sbjct: 231 GADFDPDTGKIAQGRKVVLLNEEEANALKDKLEGKTWTVSKKEEKATTRKPYPPFTTSTL 290
Query: 621 QQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIF 680
QQ++ KL SA TM++AQKLYE G ITYMRTD +H+SDEA K RS +
Sbjct: 291 QQESNRKLGISARDTMRIAQKLYE---------EGYITYMRTDSVHLSDEAIKAARSCVE 341
Query: 681 ERYGSHH-APEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWS 739
E+YG + +P+ PR+Y K K AQEAHEAIRP R +GL ++ LY LIW
Sbjct: 342 EKYGKQYLSPK--PRQYTTKSKGAQEAHEAIRPAGQRFRTPQETGLSGQE-FGLYDLIWK 398
Query: 740 RTMACQMQPATVGQIQV--DIGNADESIVFRSSCSRVEFLGFQAAY----EDVDAGAIRY 793
RT+A QM A + QI V D+ A FRSS R++F GF AY +D DA
Sbjct: 399 RTVASQMANAQLTQITVLLDVEEAG----FRSSGKRIDFPGFFRAYVEGSDDPDAAI--- 451
Query: 794 KENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPS 853
EN+E IL L+ GD E+++ H TQPPARY+E SLVK LE G+GRPS
Sbjct: 452 -ENQE-------VILPPLEEGDHPDCKELDVLGHETQPPARYTEASLVKMLEGEGVGRPS 503
Query: 854 TYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSA 913
TYAS + ++DR Y ++ + L P F V + L +F ++ D FT+ ME LD ++
Sbjct: 504 TYASIIGTIRDRGYAQMRGKALVPTFTAFAVVSLLETHFPDLVDAKFTSKMEQTLDEIAT 563
Query: 914 GLTEWKGLLVDYWSRFSSYCTCAQS---LHIHQVEKMLEKTFG-DSLFASLPNKDRSCPV 969
G +W V Y +F S S + I Q++ + K D+L A++
Sbjct: 564 GEAQW----VPYLKKFYSGEEGLDSQVKVGIDQIDPGVAKAINLDNLEATV--------- 610
Query: 970 CGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQR--NTNVDEPKLIGH 1027
K+ +FG + + I L D + + + + + P+ +G
Sbjct: 611 --------KIGKFGPYVEVLQEEEKITASIPTDLTPSDLDPEQINKLLKQKTEGPQKLGL 662
Query: 1028 HPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNL 1086
HP + E + + G YG YVQLGE PKRAS+ +VD +TL+ A+ LL P L
Sbjct: 663 HPENGEAIYILIGSYGPYVQLGEASEENKKPKRASLPKGTNVDDVTLDMAVGLLALPRLL 722
Query: 1087 GNHPKDGQPIMLRLARAGFSVRHR-----RTIASVPKNMKPNDVTLEKALEFLSG-KDVR 1140
G HP+ G I L R G V H + S+ K +TLE+ALE L+ K R
Sbjct: 723 GTHPETGAKIKASLGRFGPYVVHDQGKEGKDYRSLKKEDDVLTITLERALELLAQPKRGR 782
Query: 1141 RCGRPK 1146
GR K
Sbjct: 783 GGGRTK 788
>gi|379795617|ref|YP_005325615.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356872607|emb|CCE58946.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 691
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 254/646 (39%), Positives = 361/646 (55%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 6 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 65
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 66 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 121 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 181 ENEIRNFKPEEYWTIEGEFRYKKS------KFNAKFLHYKNK---PFKLKTKKDVEKITA 231
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 232 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 291
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS+ A E + I ++YG + RK K + Q+AHEAI
Sbjct: 292 QGTVGLITYMRTDSTRISETAKSEAKQYITDKYGESFVSK---RKASGK-QGDQDAHEAI 347
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 348 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH TQ
Sbjct: 406 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDQVTATQIEPAQHFTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 456 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 516 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIGGFYSSFK-----------QDVERAEEE 564
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 565 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 605
>gi|47093924|ref|ZP_00231663.1| DNA topoisomerase I [Listeria monocytogenes str. 4b H7858]
gi|47017710|gb|EAL08504.1| DNA topoisomerase I [Listeria monocytogenes str. 4b H7858]
Length = 692
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 253/647 (39%), Positives = 360/647 (55%), Gaps = 48/647 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++V S GHVRDL V + D+ + L
Sbjct: 5 LVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTEHDYEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ--QQDALHENITVARVVFHEITEAS 469
K + A A+ + LA+DPDREGEAIAWH+ L+ Q D L RVVF+EIT+ +
Sbjct: 65 KELNQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQSDKL-------RVVFNEITKEA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K + + R+ID +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL +I D
Sbjct: 118 VKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIID 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FKP+EYWT++ K + F A+ K+ + + + K++
Sbjct: 178 REKEINNFKPEEYWTIDGNFLKGKK------KFQANFYGVNGKKK---KLSTADDVKEVM 228
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I +F V +K+ +R P+ TS+LQQ+AA KLN+ TM LAQ+LYEG+ L
Sbjct: 229 SAIKGKSFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLG 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E + I E YG + ++ K K AQ+AHEA
Sbjct: 289 KQGTVGLITYMRTDSTRIADSAILEASNYIKETYGPEFS--RNHKRSDKNAKGAQDAHEA 346
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R P + L D L+LY LIW R +A QM PA + ++VD+ N + FR+
Sbjct: 347 IRPTSAMRSPQEVKEFLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDN--NGVNFRA 404
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+++F GF Y + + KEN IL LK GD + +E +QH T
Sbjct: 405 NGSKIKFHGFMKVYVESNDDNTEEKEN----------ILPDLKKGDKVQSESLEQRQHFT 454
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LVK LEE+GIGRPSTY+ TL +Q RNYV++ ++ P G +V+ +
Sbjct: 455 QPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIE 514
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF E+ D FTA+ME+ELD V G EW ++ +++ RF A + + ++E E
Sbjct: 515 EYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKRFEPNVIKADA-EMEKIEIKDE 573
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C +CG +++K+ ++G F+ C++ P C
Sbjct: 574 PAGID------------CDLCG-APMVYKMGKYGK--FLACSRFPDC 605
>gi|153954040|ref|YP_001394805.1| DNA topoisomerase I [Clostridium kluyveri DSM 555]
gi|219854653|ref|YP_002471775.1| hypothetical protein CKR_1310 [Clostridium kluyveri NBRC 12016]
gi|146346921|gb|EDK33457.1| Hypothetical protein CKL_1415 [Clostridium kluyveri DSM 555]
gi|219568377|dbj|BAH06361.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 697
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 269/680 (39%), Positives = 376/680 (55%), Gaps = 59/680 (8%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KAK I YLG Y V S GHVRDL V D++++ +
Sbjct: 2 GQKLVIVESPAKAKTIGKYLGKNYVVEASMGHVRDLPKSQLGVDIDNEYNPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L ++ +E + LA+DPDREGEAI+WH+ +L+ L EN R+ FHEIT+
Sbjct: 62 EILDKLRKQAKKSEKIYLATDPDREGEAISWHLSHVLK----LDEN-EKCRIEFHEITKN 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K ++++AREI+ NLV A ARR LD L+G+ ISP+LWRK+ SAGRVQS AL LIC
Sbjct: 117 AVKNSIKSAREININLVNAQQARRILDRLVGYKISPILWRKVKWGLSAGRVQSVALKLIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE +I F P+EYWT+E +L KK+ ++ F LT K+ + I + E I
Sbjct: 177 EREKKILSFAPEEYWTIECMLHKKD----ESKCFNVRLTTLNKKK---IEISNKDEVDKI 229
Query: 589 EQKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+++ S +F ++K+ K + KNP P+ITSTLQQDA KLNFS TM +AQ+LYEGV
Sbjct: 230 IKELESGDF-IVKSIKNTSKNKNPLPPFITSTLQQDAYKKLNFSTKRTMSIAQQLYEGVD 288
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GLITYMRTD + IS EA + R I ++G + E PR FK KN Q+AH
Sbjct: 289 IKGHGTIGLITYMRTDSVRISKEAQQVCRDFIVNQFGKEYV-ESKPRN-FKSKKNIQDAH 346
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT+I P L D K+Y LIW R +A QM A + +DI N + +
Sbjct: 347 EAIRPTNIEITPDKAKADLKPDQYKVYKLIWDRFVASQMASAKIDVTSIDIVNNNYGL-- 404
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R S++ F GF Y+ V E E+ D +L L+ G+ L ++ KQH
Sbjct: 405 RVGGSKISFYGFMKVYQYVT-------EEEKLD-----IVLPKLEEGELLLKKSIDGKQH 452
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPAR+SE SLVK LEE GIGRPSTYA L L DR Y+ + + L P G +V+
Sbjct: 453 FTQPPARFSEASLVKTLEENGIGRPSTYAPILSTLLDRKYIQREKKTLIPTELGDIVNNI 512
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQ------SLHI 941
+S YF +V D FTA++E++LDN+ G W ++ ++ A+ ++
Sbjct: 513 VSEYFKQVVDVEFTAEIESKLDNIEEGKDNWTKVVGKFYEPLKKAIEIAEKEVARITIED 572
Query: 942 HQVEKMLEKT----------FGDSL----FASLPNK-------DRSCPVCGEGTLIFKVS 980
+ +K FGD L + N D CP CGE L+ K S
Sbjct: 573 KVTDIKCDKCGRNMVIKHGRFGDFLACPGYPECKNTKPIVEELDVKCPKCGEKILV-KKS 631
Query: 981 RFGAGYFIGCNQHPRCNYIA 1000
R G ++ GC+ +P C++++
Sbjct: 632 RKGRKFY-GCSSYPDCDFVS 650
>gi|146325788|sp|Q2YXL8.2|TOP1_STAAB RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
Length = 689
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 254/646 (39%), Positives = 361/646 (55%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW +E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWIIEGEFRYKKS------KFNAKFLHYKNK---PFKLKTKKDIEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQTIKFKGFMTLYVETKDDIDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|82750851|ref|YP_416592.1| DNA topoisomerase I [Staphylococcus aureus RF122]
gi|82656382|emb|CAI80801.1| DNA topoisomerase I [Staphylococcus aureus RF122]
Length = 691
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 254/646 (39%), Positives = 361/646 (55%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 6 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 65
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 66 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 120
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 121 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 180
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW +E K+S F A H+++K + + + + I
Sbjct: 181 ENEIRNFKPEEYWIIEGEFRYKKS------KFNAKFLHYKNK---PFKLKTKKDIEKITA 231
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 232 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 291
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 292 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 347
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 348 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 406 GQTIKFKGFMTLYVETKDDIDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 456 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 516 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 564
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 565 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 605
>gi|365157128|ref|ZP_09353409.1| DNA topoisomerase 1 [Bacillus smithii 7_3_47FAA]
gi|363625862|gb|EHL76873.1| DNA topoisomerase 1 [Bacillus smithii 7_3_47FAA]
Length = 691
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 267/648 (41%), Positives = 361/648 (55%), Gaps = 50/648 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + F + L
Sbjct: 5 LVIVESPAKAKTIEKYLGKKYKVKASMGHVRDLPKSQMGVDIKNRFEPKYITIRGKGAIL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV---ARVVFHEITEA 468
K +K A A+ + LA+DPDREGEAIAWH+ L N+ + RVVF+EIT+
Sbjct: 65 KELKSAAKKAKKVYLAADPDREGEAIAWHLAHSL--------NLDMDSDCRVVFNEITKD 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+IK + + R I+ +LV A ARR LD L+G+ ISPLLW+K+ SAGRVQS AL LI
Sbjct: 117 AIKESFKHPRPINMDLVDAQQARRVLDRLVGYKISPLLWKKVKKGLSAGRVQSVALRLII 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI FKP+EYWT+EAV K ++ F A K+ + + S + K+I
Sbjct: 177 DREKEIQNFKPEEYWTIEAVFRK------NSDRFQASFYGIDGKKQD---VKSEEQVKEI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
K+N F V +K+ R P+ TS+LQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 228 LAKLNGEEFTVDSVTKKERKRNPAPPFTTSSLQQEAARKLNFRAKKTMMIAQQLYEGIDL 287
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
GLITYMRTD IS+ A KE I E +G ++ P E ++ +K NAQ+AHE
Sbjct: 288 GKEGTVGLITYMRTDSTRISEVAQKESLQYIEEHFGKNYTPTEKRKE--RKQTNAQDAHE 345
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT R PA + L D KLY LIW R +A QM PA + I VD+ ++FR
Sbjct: 346 AIRPTSTFREPAKIKEYLTRDQFKLYKLIWERFVASQMAPAIMDTISVDL--LQNGVLFR 403
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S+++F GF Y + G KE +EN L L+ GD + ++E QH
Sbjct: 404 ANGSKIKFPGFMKVYVE---GTDDNKEEKEN-------WLPDLQKGDRVNSEKIEPVQHF 453
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RY+E LVK LEELGIGRPSTYA TL +Q R YV++ ++ P G +V L
Sbjct: 454 TQPPPRYTEARLVKTLEELGIGRPSTYAPTLDTIQKRGYVSLDNKRFVPTELGEIVYELL 513
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+FSE+ D FTA+ME ELD + G EW ++ +++ F H+ + E+ +
Sbjct: 514 LEFFSEIVDVEFTANMEKELDEIEEGKVEWIKVIDNFYKGFEK--------HLDKAEQEM 565
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
EK +A C CG ++FK+ R+G F+ C+ P C
Sbjct: 566 EKVEIKDEYAG-----EDCERCG-SPMVFKMGRYGK--FMACSNFPEC 605
>gi|168188043|ref|ZP_02622678.1| DNA topoisomerase I [Clostridium botulinum C str. Eklund]
gi|169294125|gb|EDS76258.1| DNA topoisomerase I [Clostridium botulinum C str. Eklund]
Length = 696
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 265/681 (38%), Positives = 382/681 (56%), Gaps = 63/681 (9%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KAK I YLG Y V S GH+RDL V +++++ +
Sbjct: 2 GQKLVIVESPAKAKTIGKYLGKNYIVTASMGHIRDLPKSQLGVDIENNYNPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L S++ ++ + LA+DPDREGEAI+WH+ E L+ + EN R+ F+EIT+
Sbjct: 62 ELLSSLRKQAKKSDKVFLATDPDREGEAISWHLAEALK----IDEN-EECRIEFNEITKN 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+IK A+++ R+++ NLV A ARR LD L+G+ ISP+LWRK+ SAGRVQS AL +IC
Sbjct: 117 AIKSAIKSPRKLNLNLVDAQQARRVLDRLVGYKISPILWRKVKWGLSAGRVQSVALKMIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI EF P+EYWT+E L K++S TF ++ K S+ K++
Sbjct: 177 DRENEIKEFNPREYWTIECELKKQKSQR--TF-IVKLVSKNNEKIEINNEEESNLIIKEL 233
Query: 589 EQKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+Q N +K+ K+S K P P+ TST QQD+ KLNFS +M +AQ+LYEG+
Sbjct: 234 KQ-----NEYTVKSIKKSEKHKKPLPPFTTSTFQQDSYKKLNFSTKKSMSVAQQLYEGID 288
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GLITYMRTD + ISDEA K R I E +G ++ PE + FK KN Q+AH
Sbjct: 289 IKGKGTVGLITYMRTDSVRISDEAQKNARQFITENFGQNYVPE--TIRNFKGKKNIQDAH 346
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT I +P + L D K+Y+LIW R MA QM + + ++I N +
Sbjct: 347 EAIRPTYIELVPDEIKDNLKPDQFKVYNLIWKRFMASQMADCIMNTMSININNG--QYIL 404
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+S S ++F GF+ Y +Y+E+EE+ + F +L+ + D +VE KQH
Sbjct: 405 RASGSNIKFDGFKKVY--------KYEEDEESLK---FPLLDENEVLDD---KKVEGKQH 450
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPAR+SE +LVK LEE GIGRPSTYA + L DR Y+ + + L P G +V+
Sbjct: 451 FTQPPARFSEATLVKTLEENGIGRPSTYAPIVSTLLDRKYIEREKKTLTPTELGFIVNNI 510
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+S YF ++ D FTA+ME +LDN+ G +WK ++ +++S C I +++
Sbjct: 511 VSEYFKQIVDVEFTAEMEGKLDNIEEGKEKWKDVVNEFYSPLIE-CIDIAEKEIAKIKIE 569
Query: 948 LEKT-----------------FGDSL----FASLPNK-------DRSCPVCGEGTLIFKV 979
E T FGD L + N D CPVCG G ++ +
Sbjct: 570 DEVTDVKCDKCGRNMVIKHGRFGDFLACPGYPECKNTKPIVKELDVPCPVCG-GKILLRK 628
Query: 980 SRFGAGYFIGCNQHPRCNYIA 1000
SR G ++ GC+ +P CN+++
Sbjct: 629 SRKGRKFY-GCSNYPECNFVS 648
>gi|78187915|ref|YP_375958.1| DNA topoisomerase I [Chlorobium luteolum DSM 273]
gi|78167817|gb|ABB24915.1| DNA topoisomerase I [Chlorobium luteolum DSM 273]
Length = 802
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 270/765 (35%), Positives = 421/765 (55%), Gaps = 72/765 (9%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
++++VVES +KAK I YLGD Y V S GH++DL + + D+ + +E+
Sbjct: 13 RTLIVVESPSKAKTINKYLGDGYTVFASVGHIKDLPKKEIGLDFDNHYEPRYEIIPGKEK 72
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
++ +K S A+ +++A+DPDREGEAIAWHI + V RV+F+EIT+++
Sbjct: 73 VVRQLKKLASEADGVLIATDPDREGEAIAWHIANEIGSTPK-----PVFRVMFNEITKSA 127
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I A+ R+ID LV++ R+ LD ++G+ +SP LW + SAGRVQS AL LIC+
Sbjct: 128 ILAAIDEPRQIDYRLVRSQQTRQGLDKIVGYRVSPFLWNVVMRGLSAGRVQSVALRLICE 187
Query: 530 REMEIDEFKPQEYWTVEA--VLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 587
RE+EI+ F+ QEYWT+ A + + KE+ F A L + K+ + + EA+
Sbjct: 188 REVEINNFEVQEYWTIAADFITEGKET-------FRARLVKLEGKKPE---LSNQAEAEA 237
Query: 588 IEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+ ++ ++ + R+ RK P P+ TS LQQ A+N+L F + TM+LAQ+LYEG+
Sbjct: 238 AADLVQKGSYTLLDIAPRTQQRKPPLPFTTSLLQQAASNQLGFGSKKTMRLAQQLYEGID 297
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
L + A GLITYMRTD + I +EAA + RS I +G + G K KNAQ+AH
Sbjct: 298 LGEEGATGLITYMRTDSIRIGNEAAGQARSFIEHAFGKEYIGWGGAAK---SSKNAQDAH 354
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EA+RPT + R P L L D KLY LIW R +A M PA + Q +VD+G+ I+F
Sbjct: 355 EAVRPTAVGRRPEQLKSYLSADQFKLYDLIWKRFVAAMMAPAKIEQTRVDVGDPARDIMF 414
Query: 768 RSSCSRVEFLGFQAAYEDVDA--GAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
R+S SRV F GF + D + R +E ++ + + L+ L LGE++ +
Sbjct: 415 RASGSRVLFPGFMRVFNDQEELEYEARKSTKDEGEKEQEVRLPKQLEKDGLLGLGEIDNR 474
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
Q T+PPAR+SE +LVK+L+ GIGRPSTYAS LQDR YV ++ + + P G VS
Sbjct: 475 QSFTRPPARFSEATLVKELDNYGIGRPSTYASIFSTLQDRRYVELQKKKIIPTMLGMDVS 534
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
L F ++ + FTA+ME ELD V+AG E++ +L ++ + +L + + +
Sbjct: 535 QILVANFPDLFNVDFTAEMEGELDKVAAGEDEYEKVLDSFYRPLET------ALSVRKED 588
Query: 946 KMLEKTFGDSLFASLPNKDRS-CPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
++ + N+D + C CGEG +I K ++ +G F+GC+++P+C I
Sbjct: 589 PLIPQ-----------NRDAALCEKCGEGHMIVKWTQ--SGKFLGCSRYPKCRNIKPI-- 633
Query: 1005 GDDDEEDTLQRNTNVDEPKLIG-HHPASKE-KVLLKSGPYGFYVQLGEDRTGYLPKRASV 1062
+TN ++PK G P+ E +LL++G G ++ +S
Sbjct: 634 -----------STNREKPKDTGILCPSCGEGHMLLRNGRLGPFLAC-----------SSY 671
Query: 1063 SHIKDVDSITLEDALELLRYP---VNLGNHPKDGQPIMLRLARAG 1104
+ +++ + +E ++ P +L PK G P+ LR+ + G
Sbjct: 672 PKCNTLLNLSKQRHVEPMKIPPVQTDLAC-PKCGSPMNLRVGKRG 715
>gi|406957375|gb|EKD85313.1| hypothetical protein ACD_38C00047G0022, partial [uncultured
bacterium]
Length = 617
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 267/653 (40%), Positives = 375/653 (57%), Gaps = 44/653 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
+++V+VES TKA+ +Q +LGD Y++ S GH+RDL V + +F + +P
Sbjct: 2 QNLVIVESPTKARTLQKFLGDKYQIEASMGHIRDLPKSEFGVDIEHNFEPKYIIPRDKKK 61
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ +K A A+ L LA+DPDREGEAIAWHI E+L+ DA ++ V RVVFHEITE +
Sbjct: 62 RVNELKKAAKEAQILWLATDPDREGEAIAWHISELLR--DAKIKS-PVKRVVFHEITEGA 118
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A R+ID LV A ARR LD L+G+ +SPLLW+K+ SAGRVQS AL LI +
Sbjct: 119 IKEAFDNPRQIDFKLVDAQQARRVLDRLVGYKLSPLLWQKVRRGLSAGRVQSVALRLIVE 178
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE E+ FKPQEYW +EA L ES + F A L K +L I + E+
Sbjct: 179 REKEVLAFKPQEYWLIEAEL---ESKNRKEAKFLATLIE---KNGEKLVIKNKEESDGHV 232
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ + ++ +++ K +K+ + R P+ TSTLQQ AAN+L SA TM LAQ LYE
Sbjct: 233 KNLENSEYKISKITKKEVRRHPYPPFTTSTLQQTAANRLGMSAKKTMMLAQALYEH---- 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFK-KVKNAQEAHE 708
GLITYMRTD +++S +A + +R I +G + P K++K K KNAQEAHE
Sbjct: 289 -----GLITYMRTDSVNLSAQAVEAVRKYIGSVFGKSYLPSSA--KFYKSKSKNAQEAHE 341
Query: 709 AIRPTDIRRLPAMLSGL--LDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
AIR TD+ R P+ + + +++D +LY LIW R +ACQM A + Q +D+ A +
Sbjct: 342 AIRVTDVSRQPSAIKEVSGMNKDHSRLYELIWKRFVACQMNEAVMDQTTIDV-EASTGYL 400
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEEN-DRHEAFAILNSLKTGDPLYLGEVELK 825
R++ S ++F G+ Y+ I+Y++ EE+ D+ + L L +PL L ++
Sbjct: 401 LRATGSIIKFDGWLRLYQ---VSGIKYQDEEESTDKDKKNQALPVLSENEPLNLIQILPT 457
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PP RY+E SL+KKLEEL IGRPSTYA L + +R YV R P G V
Sbjct: 458 QHFTEPPPRYNEASLIKKLEELEIGRPSTYAPILSTIVERFYVEKLERKFIPTSLGFTVC 517
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
FL YF +V DYSFTA ME ELD ++ G EWK + ++ F + + E
Sbjct: 518 EFLLEYFPDVFDYSFTAQMEQELDEIAQGQREWKPTIRTFYEPFEK--------KLEETE 569
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
K+ +K + A RSCP CG+ LI ++ +FG F C+ P C +
Sbjct: 570 KVAKKVKMEVELAG-----RSCPECGKD-LIVRIGKFGK--FFACSGFPDCKH 614
>gi|118443725|ref|YP_878224.1| DNA topoisomerase I [Clostridium novyi NT]
gi|118134181|gb|ABK61225.1| DNA topoisomerase I [Clostridium novyi NT]
Length = 696
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 266/682 (39%), Positives = 381/682 (55%), Gaps = 65/682 (9%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KAK I YLG Y V S GHVRDL V +++++ +
Sbjct: 2 GQKLVIVESPAKAKTIGKYLGKNYIVTASMGHVRDLPKSQLGVDIENNYNPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L S++ ++ + LA+DPDREGEAI+WH+ E L+ + EN R+ F+EIT+
Sbjct: 62 ELLSSLRKQAKKSDKVFLATDPDREGEAISWHLAEALK----IDEN-EECRIEFNEITKN 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+IK A++ R ++ NLV A ARR LD L+G+ ISP+LWRK+ SAGRVQS AL +IC
Sbjct: 117 AIKSAIKNPRRLNLNLVDAQQARRVLDRLVGYKISPILWRKVKWGLSAGRVQSVALKMIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHL-THFQSKRLNQLSIGSHTEAKD 587
DRE EI EF P+EYWT+E L ++S SF L + K S++ K+
Sbjct: 177 DRENEIKEFNPKEYWTIECELKNEKSKK----SFTVKLVSKNNEKIEINNEEESNSIIKE 232
Query: 588 IEQKINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
++Q N ++K+ K+S K P P + TST QQD+ KLNFS +M +AQ+LYEG+
Sbjct: 233 LKQ-----NKYIVKSIKKSEKHKKPLPPFTTSTFQQDSYKKLNFSTKKSMSVAQQLYEGI 287
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ GLITYMRTD + ISDEA K R I E +G ++ PE + FK KN Q+A
Sbjct: 288 DIKGKGTIGLITYMRTDSVRISDEAQKNARQFITENFGQNYVPES--IRNFKGKKNIQDA 345
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT I P + L D K+Y+LIW R MA QM + + ++I N ++
Sbjct: 346 HEAIRPTYIELAPDEIKDNLKPDQFKIYNLIWKRFMASQMADCIMDTMSININNGQYTL- 404
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
R S S ++F GF+ Y +Y+E+EE+ + F +L + + L +VE KQ
Sbjct: 405 -RVSGSNIKFDGFKKVY--------KYEEDEESLK---FPVL---EENEILQDKKVEGKQ 449
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPAR+SE +LVK LEE GIGRPSTYA + L DR Y+ + + L P G +V+
Sbjct: 450 HFTQPPARFSEATLVKTLEENGIGRPSTYAPIVSTLLDRKYIEREKKTLTPTELGFIVNN 509
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+S YF ++ D FTA+ME++LDN+ G +WK ++ +++S C I +++
Sbjct: 510 IVSEYFKQIVDVEFTAEMESKLDNIEEGKEKWKDVVNEFYSPLIE-CINIAEKEIAKIKI 568
Query: 947 MLEKT-----------------FGDSL----FASLPNK-------DRSCPVCGEGTLIFK 978
E T FGD L + N D CPVCG G ++ +
Sbjct: 569 EDEVTDIKCDKCGRNMVIKHGRFGDFLACPGYPDCKNTKPIVKELDVPCPVCG-GKILLR 627
Query: 979 VSRFGAGYFIGCNQHPRCNYIA 1000
SR G ++ GC+ +P CN+++
Sbjct: 628 KSRKGRKFY-GCSNYPECNFVS 648
>gi|390934874|ref|YP_006392379.1| DNA topoisomerase I [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570375|gb|AFK86780.1| DNA topoisomerase I [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 685
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 261/655 (39%), Positives = 375/655 (57%), Gaps = 61/655 (9%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
KS+V+VES +KAK I YLG Y+V S GH+RDL + + +F +
Sbjct: 3 KSLVIVESPSKAKTIHKYLGKNYKVEASMGHIRDLPKSQLGIDIEKNFEPKYITIRGKGP 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV---ARVVFHEIT 466
++ +K A + LA+DPDREGEAI+WH+ +L NI + R+ FHEIT
Sbjct: 63 IIEKLKKEAKNASKIYLATDPDREGEAISWHLASLL--------NIDINEKCRIEFHEIT 114
Query: 467 EASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSL 526
+ +I+ A++ REI+ NLV A ARR LD L+G+NISPLLW+K+ SAGRVQS A L
Sbjct: 115 KNAIQNAIKNPREINMNLVDAQQARRILDRLVGYNISPLLWKKIKRGLSAGRVQSVATRL 174
Query: 527 ICDREMEIDEFKPQEYWTVEAVL--DKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTE 584
ICDRE EI++FKP+EYW++ A L +KK H F A F + ++ + +
Sbjct: 175 ICDREKEIEDFKPEEYWSISAYLYKEKKTQH------FEA---KFYGTKEGKVELKNE-- 223
Query: 585 AKDIEQKINS-ANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKL 642
KD+ + I+ + V++N K ++NP+ P+ITST+QQ+A+ L F+A TM +AQ+L
Sbjct: 224 -KDVNKVIDDLTDDYVVENVKTGTKKRNPSPPFITSTMQQEASKTLGFTAKKTMMIAQQL 282
Query: 643 YEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
YEGV++ + GLITYMRTD +SDEA K I ++YG +A Y KK N
Sbjct: 283 YEGVEIKGEGSLGLITYMRTDSTRVSDEAKKAAYEYILQKYGKEYANPNAT--YSKKGGN 340
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
Q+AHEAIRPT I P + L D KLY LIWSR +A QM PA + VDI N
Sbjct: 341 VQDAHEAIRPTYIDLDPERIKDSLKPDQYKLYKLIWSRFLASQMSPALYDTMNVDIVN-- 398
Query: 763 ESIVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGE 821
++ VF++S S+V+F GF Y +DV++ ENEE +L L +GD L L E
Sbjct: 399 KNYVFKASGSKVKFAGFMVVYTDDVES------ENEEK-------MLPMLNSGDFLKLKE 445
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRG 881
++ +QH TQPPARY+E +L+K+LEE GIGRPSTYA + L +R YV + + L P G
Sbjct: 446 LKPEQHFTQPPARYTEATLIKELEEKGIGRPSTYAPIISTLLERGYVIKEKKNLKPTELG 505
Query: 882 RMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI 941
+V+ + +F ++ D FTA ME +LD + G+ +W ++ ++++ F+ A+ +
Sbjct: 506 FIVTDVMKEFFPDIVDVKFTAQMEEQLDRIEEGIEKWCDVIDEFYNGFNDSLKVAEE-QM 564
Query: 942 HQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+E E+T D C CG ++ K R+G F+ C P C
Sbjct: 565 KDIEIKDEET------------DIKCEFCGR-NMVIKYGRYGK--FLACPGFPEC 604
>gi|314933429|ref|ZP_07840794.1| DNA topoisomerase [Staphylococcus caprae C87]
gi|313653579|gb|EFS17336.1| DNA topoisomerase [Staphylococcus caprae C87]
Length = 689
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 260/677 (38%), Positives = 373/677 (55%), Gaps = 58/677 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKYAKKAKKVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KDSFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A HF++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKS------KFNAKFLHFKNK---PYKLNTKEDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVNKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDSAKSEAHNYITDKYGKEYVSK---RKATGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + I +D+ D I FR++
Sbjct: 346 RPTSTLRTPDDMKPYLTRDQHRLYKLIWERFVASQMAPAILDTIALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++END+ L L+ GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKENDKENK---LPKLEEGDKVTATQIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVYEQVQE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFS-------------------- 930
YF E+ D FT +MET LD ++ G T W+ ++ D+++ F
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDTNWRKVVGDFYNSFKQDVERAEEEMEKIEIKDEPA 573
Query: 931 ----SYCTCAQSLHIHQVEKMLE-KTFGD--SLFASLPNKDRSCPVCGEGTLIFKVSRFG 983
C + + + K + F D + A + + CP C EG ++ + S+
Sbjct: 574 GEDCEVCGSPMVIKMGRYGKFMACSNFPDCRNTKAIVKSIGVKCPKCNEGEVVERKSKKN 633
Query: 984 AGYFIGCNQHPRCNYIA 1000
F GC+Q+P C++I+
Sbjct: 634 R-IFYGCSQYPDCDFIS 649
>gi|163816843|ref|ZP_02208206.1| hypothetical protein COPEUT_03033 [Coprococcus eutactus ATCC 27759]
gi|158448100|gb|EDP25095.1| DNA topoisomerase I [Coprococcus eutactus ATCC 27759]
Length = 691
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 370/651 (56%), Gaps = 50/651 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES KAK I+ +LG YEV+ S GHVRDL + D+DF +
Sbjct: 2 AKNLVIVESPAKAKTIKKFLGSNYEVIASNGHVRDLPKSQMGIDVDNDFEPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L +++ A+ A+ + LA+DPDREGEAI++H+++ L+ +D ++ IT F+EIT+
Sbjct: 62 DILAALRKAVKKADKIYLATDPDREGEAISYHLMKALKLEDKDYKRIT-----FNEITKN 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K +++ AR+ID NLV A ARR LD L+G+ ISP+LW K+ SAGRVQS AL L+C
Sbjct: 117 AVKNSIKQARDIDMNLVDAQQARRVLDRLVGYKISPVLWAKIKRGLSAGRVQSVALKLVC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI++F PQEYWT++A L + TF F T N+ I +I
Sbjct: 177 DREKEINDFIPQEYWTLDANLIAGKMKKPITFKFTGDGT-------NKEEISGRAALDEI 229
Query: 589 EQKINSANFQV--IKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ ++ + V IK S+R+ +K P P+ TST+QQ+A++KLNF+ + TM++AQ+LYEGV
Sbjct: 230 LKSLDGGEYVVKSIKESERN--KKPPLPFTTSTMQQEASSKLNFATSKTMRIAQQLYEGV 287
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ GLITY+RTD IS+EA + I + +G + + R K K Q+A
Sbjct: 288 DIKGRGTIGLITYLRTDSTRISEEAVAAADTYIADNFGQQYIGDSNGRA--KTDKKIQDA 345
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPTD+ P M+ + D +LY LI++R +A QM A V +G S V
Sbjct: 346 HEAIRPTDVALSPVMIKDQVSHDQFRLYQLIYNRFLASQMSGAVYSVKNVKVGCG--SAV 403
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
F++S S++ F GF A Y N +NDR E+ A +N+L GD L L ++ KQ
Sbjct: 404 FQTSASKIAFDGFLAVY------------NLDNDRGESVAGINNLSEGDVLNLDSLDEKQ 451
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARY+E LVK LEELGIGRPSTYA T+ + R Y+T + + LY G V+
Sbjct: 452 HFTQPPARYTEALLVKTLEELGIGRPSTYAPTISTILARRYITKEQKKLYVTALGDAVNQ 511
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ F + D +FTA+ME+ LDN+ G +WK ++ +++ + + E
Sbjct: 512 SMEQAFPVIIDVNFTANMESLLDNIGEGAVDWKVVVRNFYPDLDE--------AVKKAEA 563
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA-GYFIGCNQHPRC 996
LE S+ D C VCG ++ ++G G F+ C P C
Sbjct: 564 ELE-----SIKIEDEVSDEVCDVCGRNMVV----KYGPHGKFLACPGFPEC 605
>gi|223044228|ref|ZP_03614265.1| DNA topoisomerase I [Staphylococcus capitis SK14]
gi|417907098|ref|ZP_12550874.1| DNA topoisomerase I [Staphylococcus capitis VCU116]
gi|222442378|gb|EEE48486.1| DNA topoisomerase I [Staphylococcus capitis SK14]
gi|341596729|gb|EGS39320.1| DNA topoisomerase I [Staphylococcus capitis VCU116]
Length = 689
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 259/677 (38%), Positives = 374/677 (55%), Gaps = 58/677 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKYAKKAKKVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KDSFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKS------KFNAKFLHYKNK---PYKLNTKEDVEKITT 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVNKKEKTRNPTNPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDSAKSEAHNYITDKYGKEYVSK---RKATGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + I +D+ D I FR++
Sbjct: 346 RPTSTLRTPDEMKPYLTRDQHRLYKLIWERFVASQMAPAILDTIALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++END+ L L+ GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKENDKENK---LPKLEEGDKVTATQIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVYEQVQE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFS-------------------- 930
YF E+ D FT +MET LD ++ G T W+ ++ D+++ F
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDTNWRKVVGDFYNSFKQDVERAEEEMEKIEIKDEPA 573
Query: 931 ----SYCTCAQSLHIHQVEKMLE-KTFGD--SLFASLPNKDRSCPVCGEGTLIFKVSRFG 983
C + + + K + F D + A + + +CP C EG ++ + S+
Sbjct: 574 GEDCEVCGSPMVIKMGRYGKFMACSNFPDCRNTKAIVKSIGVTCPKCNEGEVVERKSKKN 633
Query: 984 AGYFIGCNQHPRCNYIA 1000
F GC+Q+P C++I+
Sbjct: 634 R-IFYGCSQYPDCDFIS 649
>gi|83589874|ref|YP_429883.1| DNA topoisomerase I [Moorella thermoacetica ATCC 39073]
gi|83572788|gb|ABC19340.1| DNA topoisomerase I [Moorella thermoacetica ATCC 39073]
Length = 697
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 259/660 (39%), Positives = 374/660 (56%), Gaps = 52/660 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES KAK I +LG Y + PS GHVRDL V +++F +
Sbjct: 3 AKTLVIVESPAKAKTIGKFLGKNYTIKPSMGHVRDLPKSQFGVDVENNFEPRYITIRGKG 62
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+K ++ A A+ ++LA DPDREGEAIAWH+ +L D R+ F+EIT
Sbjct: 63 EIVKELRAAAQKAQRVLLAPDPDREGEAIAWHLQHLLGLPDE------AIRIEFNEITRN 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I+ A++ R+ID + V A ARR LD ++G+ +SPLLWRK+ SAGRVQS A+ LI
Sbjct: 117 AIQEAVKKPRKIDQDRVDAQQARRILDRVVGYRLSPLLWRKVRKGLSAGRVQSVAVRLIV 176
Query: 529 DREMEIDEFKPQEYWTVEA-VLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 587
DRE EI+ F+P+EYW++ A +L + E + FPA L + + LN + + E +
Sbjct: 177 DREQEIEAFQPEEYWSLTAWLLPENEGEA-----FPARLVKYAGEDLN---VKNEGEMES 228
Query: 588 IEQKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
I + + V+ K+ RKNP P+ TSTLQQ+A KLNF++ TM++AQ+LYEG+
Sbjct: 229 ILHSLEGTTY-VVAEVKQRERRKNPAAPFTTSTLQQEAYRKLNFTSRRTMQVAQQLYEGI 287
Query: 647 QLPDGTA-AGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
L G GLITY+RTD ++ A E R + ER+GS + PE G R+Y K K+ Q+
Sbjct: 288 DLGGGQGPVGLITYIRTDSTRVASVAQLEARDFLMERFGSEYVPE-GLRQY-KGRKDIQD 345
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEAIRPT + R PA L +L D +LY+LIW R +A QMQ A + + VDI
Sbjct: 346 AHEAIRPTSVWREPASLKNILTRDQFRLYNLIWERFVASQMQAAVMDTVTVDITAG--PC 403
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
+FR++ S V+F GF Y++ ++ E+ D+ + L L TG L L +E K
Sbjct: 404 LFRATGSVVKFPGFLKVYQE-------GRDGEDKDQEQR---LPPLATGQTLKLQSLEPK 453
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH TQPP RY+E +LVK +EELGIGRPSTYA T++ + R YVT + + P GR+V
Sbjct: 454 QHFTQPPPRYTEATLVKTMEELGIGRPSTYAPTIETILQRGYVTREQKQFVPTELGRVVV 513
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
A L +F ++ D FTA ME +LD + AG W+ +L +++ F E
Sbjct: 514 ALLKEHFPKIIDVEFTAHMEEQLDAIEAGKISWRQVLAEFYGPF---------------E 558
Query: 946 KMLEKTFGD--SLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
++LEK + ++ + C +CG L+ K+ R+G F+ C P C + L
Sbjct: 559 EVLEKAEAEIGTVEVPEEVSEEKCELCGR-NLVVKMGRYGK--FLACPGFPECRFTKPLL 615
>gi|452204957|ref|YP_007485086.1| DNA topoisomerase I [Dehalococcoides mccartyi BTF08]
gi|452112013|gb|AGG07744.1| DNA topoisomerase I [Dehalococcoides mccartyi BTF08]
Length = 703
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 252/655 (38%), Positives = 372/655 (56%), Gaps = 46/655 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KA+ I LG + ++ + GH+RDL + V +++F+ + A +
Sbjct: 5 LVIVESPAKARTISKMLGKDFNIMATMGHIRDLPKSTLGVDVENNFTPKYVSLKAKAKVI 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A+ ++ + LA+DPDREGEAIAWHI E+ + + RVVFHEIT+ +I
Sbjct: 65 KELKEAVKHSKAIYLATDPDREGEAIAWHISEVTKANLS-----NPKRVVFHEITKEAID 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A + RE+D +LV A ARR LD L+G+ +SPLLWRK+ SAGRVQS +L +I DRE
Sbjct: 120 KAFKNTRELDMDLVNAQQARRVLDRLVGYKLSPLLWRKVQRGLSAGRVQSVSLKIIVDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++F EYW +EA+L+KK + + +F A L + +K +L I + +EA I+++
Sbjct: 180 REIEKFVSTEYWNIEALLNKK----VKSAAFKATLAGYVTK--GKLEIHNESEADQIKKE 233
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ +++QV+K ++S +R++P P+ITSTLQQ+A KL FSA TM +AQ+LYEG+ +
Sbjct: 234 LEVSDYQVLKIKRKSNLRQSPAPFITSTLQQEAWRKLRFSAKQTMVIAQQLYEGLNVEGE 293
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD +++ A E R I E+YG + P++ R + KVK AQEAHEAIR
Sbjct: 294 GEVGLITYMRTDSTNVARTAVAETRDYITEKYGPAYLPKQA-RVFSSKVKGAQEAHEAIR 352
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES----IVF 767
PT I R P + L D KLY LIW R MA QM PA +DI + +
Sbjct: 353 PTRINRTPDFIKKSLSADQFKLYQLIWQRMMASQMSPAVFDNTTIDIEAKHQPSKTRYLL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S F GF I Y E +++D + + L ++ G+ L L ++ QH
Sbjct: 413 RTTSSVNTFPGF----------TIVYIEGKDDDEEKEQSSLPPMEEGEELKLKSLDATQH 462
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RY+E +L+K LE+ GIGRPSTYA T+ +Q+R Y+T L P G +V+
Sbjct: 463 FTQPPPRYTEATLIKALEQNGIGRPSTYAPTISTIQEREYITKLKGSLKPSELGMLVNDL 522
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F ++ FTA ME ELD ++ +W ++ ++ F I ++E
Sbjct: 523 LVEHFPDIIGIDFTAAMEAELDKIATEKLDWVPIIRRFYEPF-----------IKEIEAA 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPR----CNY 998
EK + + D CP C L+ K RFG FI C+++ + C Y
Sbjct: 572 SEKI--EKIKPPEEELDELCPECN-AKLVIKRGRFGK--FIACSRYSKEDDGCRY 621
>gi|406664611|ref|ZP_11072386.1| DNA topoisomerase 1 [Bacillus isronensis B3W22]
gi|405387459|gb|EKB46883.1| DNA topoisomerase 1 [Bacillus isronensis B3W22]
Length = 694
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 254/653 (38%), Positives = 355/653 (54%), Gaps = 59/653 (9%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL + ++++ + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASIGHVRDLPRSQMGIDTENNYDPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV---ARVVFHEITEA 468
+ +K A + + LA+DPDREGEAIAWH+ L NI + RVVF+EIT+
Sbjct: 65 QELKTAAKKVKKIYLAADPDREGEAIAWHLATAL--------NIDINSDCRVVFNEITKE 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS +L LI
Sbjct: 117 AILESFKHPRPINMDLVDAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSVSLRLII 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI F+P+EYW+++A +K + D F + ++ + + + KDI
Sbjct: 177 DRENEIKSFEPEEYWSIDASFEKNKKQ-FDAFYY--------GNGKEKVKLTNEQQVKDI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ I + F+V+ KR R + TS+LQQ+AA KLNF A TM LAQ+LYEG++L
Sbjct: 228 LKGIKGSEFEVMNVVKRERKRNASPAFTTSSLQQEAARKLNFRAKKTMMLAQQLYEGIEL 287
Query: 649 PDGTAA-GLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
A GLITYMRTD ISD A E +S I +YG G +K K NAQ+AH
Sbjct: 288 SKKEGAVGLITYMRTDSTRISDTAKTEAKSYIETKYGKDFIA--GEQKQAKAKANAQDAH 345
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT R P L +L D L+LY LIW R +A QM PA + + VD+ N D ++F
Sbjct: 346 EAIRPTSAMRTPEELKAILSRDQLRLYRLIWERFIASQMSPAVLDTVTVDLQNND--VLF 403
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S+V+F GF Y E ++ E +L ++ GD + E+E KQH
Sbjct: 404 RANGSQVKFAGFMKLY----------IEGTDDQEEETNKLLPEMEIGDKVKSLEIEPKQH 453
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RYSE LVK LEELGIGRPSTYA TL +Q R YV + ++ P G +V
Sbjct: 454 FTQPPPRYSEARLVKTLEELGIGRPSTYAPTLDTIQKRGYVQLDAKRFVPTELGEIVHQA 513
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+F E+ + FTA ME LD + G+T+W ++ +++ F
Sbjct: 514 TLEFFPEIINIEFTAQMEQNLDEIEEGITQWVNVIDEFYKDFEPRV-------------- 559
Query: 948 LEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ D + + KD C CG ++FK+ R+G F+ C+ P C
Sbjct: 560 ---KYADEVMEKIEIKDEPAGEDCEKCG-APMVFKLGRYGK--FMACSNFPDC 606
>gi|393201733|ref|YP_006463575.1| topoisomerase IA [Solibacillus silvestris StLB046]
gi|327441064|dbj|BAK17429.1| topoisomerase IA [Solibacillus silvestris StLB046]
Length = 694
Score = 438 bits (1126), Expect = e-119, Method: Compositional matrix adjust.
Identities = 254/653 (38%), Positives = 355/653 (54%), Gaps = 59/653 (9%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL + ++++ + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASIGHVRDLPRSQMGIDTENNYDPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV---ARVVFHEITEA 468
+ +K A + + LA+DPDREGEAIAWH+ L NI + RVVF+EIT+
Sbjct: 65 QELKTAAKKVKKIYLAADPDREGEAIAWHLATAL--------NIDINSDCRVVFNEITKE 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS +L LI
Sbjct: 117 AILESFKHPRPINMDLVDAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSVSLRLII 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI F+P+EYW+++A +K + D F + ++ + + + KDI
Sbjct: 177 DRENEIKSFEPEEYWSIDASFEKNKKQ-FDAFYY--------GNGKEKVKLTNEQQVKDI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ I + F+V+ KR R + TS+LQQ+AA KLNF A TM LAQ+LYEG++L
Sbjct: 228 LKGIKGSEFEVMNVIKRERKRNASPAFTTSSLQQEAARKLNFRAKKTMMLAQQLYEGIEL 287
Query: 649 PDGTAA-GLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
A GLITYMRTD ISD A E +S I +YG G +K K NAQ+AH
Sbjct: 288 SKKEGAVGLITYMRTDSTRISDTAKTEAKSYIETKYGKDFIA--GEQKQAKAKANAQDAH 345
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT R P L +L D L+LY LIW R +A QM PA + + VD+ N D ++F
Sbjct: 346 EAIRPTSAMRTPEELKAILSRDQLRLYRLIWERFIASQMSPAVLDTVTVDLQNND--VLF 403
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S+V+F GF Y E ++ E +L ++ GD + E+E KQH
Sbjct: 404 RANGSQVKFAGFMKLY----------IEGTDDQEEETNKLLPEMEIGDKVKSLEIEPKQH 453
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RYSE LVK LEELGIGRPSTYA TL +Q R YV + ++ P G +V
Sbjct: 454 FTQPPPRYSEARLVKTLEELGIGRPSTYAPTLDTIQKRGYVQLDAKRFVPTELGEIVHQA 513
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+F E+ + FTA ME LD + G+T+W ++ +++ F
Sbjct: 514 TLEFFPEIINIEFTAQMEQNLDEIEEGITQWVNVIDEFYKDFEPRV-------------- 559
Query: 948 LEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ D + + KD C CG ++FK+ R+G F+ C+ P C
Sbjct: 560 ---KYADEVMEKIEIKDEPAGEDCEKCG-APMVFKLGRYGK--FMACSNFPDC 606
>gi|427392625|ref|ZP_18886630.1| DNA topoisomerase I [Alloiococcus otitis ATCC 51267]
gi|425731135|gb|EKU93956.1| DNA topoisomerase I [Alloiococcus otitis ATCC 51267]
Length = 688
Score = 437 bits (1125), Expect = e-119, Method: Compositional matrix adjust.
Identities = 256/652 (39%), Positives = 369/652 (56%), Gaps = 57/652 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK I+ YLG Y+V+ S GH+RDL +V +D++ +
Sbjct: 4 KYLVIVESPAKAKTIEKYLGRNYKVVASKGHIRDLPKSRMAVDFEDNYKPEYITIRGKGP 63
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ-QQDALHENITVARVVFHEITEA 468
++ +K AE + LA+DPDREGEAIAWH+ +L+ QD + RVVF+EIT+
Sbjct: 64 VIQDLKKQAKKAEKVYLAADPDREGEAIAWHLSYVLKLDQDDKN------RVVFNEITKD 117
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K A ++ R +D +L+ + ARR LD ++G+ ISPLLW+K+ SAGRVQS AL +IC
Sbjct: 118 AVKDAFKSPRTLDKDLIDSQQARRVLDRIVGYQISPLLWKKVKRGLSAGRVQSVALKMIC 177
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD- 587
DRE EI +FKP+EYWT++ K S F A +K+ + + EA D
Sbjct: 178 DREEEIRQFKPEEYWTLDGKFKKSRSK------FDAKFFRLDNKKKDL----PNKEAVDQ 227
Query: 588 -IEQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
I++ +F V+K K S RKNP P+ TS+LQQ+AAN+LNF TM +AQ+LYEG
Sbjct: 228 VIQRLDQDQDFDVVKVDK-SQRRKNPQAPFTTSSLQQEAANRLNFRTGKTMMVAQQLYEG 286
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAP-EEGPRKYFKKVKNAQ 704
+++ G A GLITYMRTD ISD A E + I + YGS +A ++ P K AQ
Sbjct: 287 IKIGRGAATGLITYMRTDSKRISDLAKAEAANFIHDEYGSKYASRKKAPAK---NASGAQ 343
Query: 705 EAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES 764
+AHEAIRPT R P + L +D KLY+LIWSR +A QM+PA ++VD+
Sbjct: 344 DAHEAIRPTSAMRKPEDIEKYLSKDQYKLYNLIWSRFIASQMKPAVYDTMKVDL--VQNG 401
Query: 765 IVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVEL 824
+ FR++ S+++F G+Q Y D + K+N +L LK GD + L ++
Sbjct: 402 VTFRANGSKIKFQGYQKVYRDTS----KQKDN----------LLPDLKEGDAVKLDKLSP 447
Query: 825 KQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMV 884
QH TQPPARYSE +L+K LEE G+GRPSTYA TL +Q R YVT+ ++ P G +V
Sbjct: 448 DQHFTQPPARYSEATLIKTLEENGVGRPSTYAPTLGTIQKRYYVTLTNKRFEPTELGEIV 507
Query: 885 SAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV 944
+ + +F ++ D +FTA++E +LD V G EW ++ ++ F + A+
Sbjct: 508 NDIVVEFFPDIVDVNFTAELEEDLDKVEEGKKEWVKVIDQFYQEFKDDVSKAEEEMEEVE 567
Query: 945 EKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ F C CG G ++ K+ R+G F C+ P C
Sbjct: 568 IEDEPAGF-------------KCDKCG-GEMVIKMGRYGK--FYACSNFPDC 603
>gi|228475057|ref|ZP_04059785.1| DNA topoisomerase [Staphylococcus hominis SK119]
gi|228271042|gb|EEK12430.1| DNA topoisomerase [Staphylococcus hominis SK119]
Length = 689
Score = 437 bits (1125), Expect = e-119, Method: Compositional matrix adjust.
Identities = 252/646 (39%), Positives = 362/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDVEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +++ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKYAKKAKKIFLASDPDREGEAIAWHLSKILELEES-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKHPRGIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW++E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWSIEGEFRYKKS------KFTAKFLHYKNK---PYKLKTKKDVEKITS 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++N F++ +K+ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ELNDDAFEITNVNKKEKTRYPANPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A E +S I E+YG+ + + K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISQTAKDEAKSYIEEKYGTEYTS----NRKTKGKQGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ D I FR++
Sbjct: 346 RPTSTLRTPDEMKAYLTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K++++ND+ LN GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKDNDKENKLPKLNQ---GDKVTATQIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVYEQVKD 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ +++ F L + + E+ +EK
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDIGWRKVIDNFYGSF--------KLDVARAEEEMEK 565
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
A C VCG ++ K+ R+G F+ C+ P C
Sbjct: 566 VEIKDEPAG-----EDCEVCG-APMVIKMGRYGK--FMACSNFPDC 603
>gi|381210009|ref|ZP_09917080.1| DNA topoisomerase I [Lentibacillus sp. Grbi]
Length = 692
Score = 437 bits (1125), Expect = e-119, Method: Compositional matrix adjust.
Identities = 257/647 (39%), Positives = 358/647 (55%), Gaps = 47/647 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V PDD F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQTGVDPDDSFKPKYITVRGKGDVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K ++ A A+ + LA+DPDREGEAIAWH+ L + EN + RVVF+EIT+ +IK
Sbjct: 65 KELRSAAKKAKKVYLAADPDREGEAIAWHLAYALN----VDEN-SKCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R ID +LV A ARR LD L+G+ ISPLLW+K+ SAGRVQS A+ LI DRE
Sbjct: 120 ESFKHPRSIDGDLVDAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKP+EYW+++A K D+ +F K+ + + S + K + +K
Sbjct: 180 KEIENFKPEEYWSIDAQFQK------DSETFEGAFYGIDGKKQD---LKSEDDVKAVTEK 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD- 650
+ F V K +KR R P+ TS+LQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LEGKKFSVDKVNKRERKRNPAKPFTTSSLQQEAARKLNFRAKKTMMVAQQLYEGIDLGKK 290
Query: 651 -GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTD IS+ A +E + I + YG + +G K K + AQ+AHEA
Sbjct: 291 AGGITGLITYMRTDSTRISETAKQEAKGYIEDNYGQSY---KGYSKKAGKKEGAQDAHEA 347
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
+RPT I R P L LL D +LY LIW R +A QM PA + + V + N I FR+
Sbjct: 348 VRPTSIMRDPKSLKNLLSRDQYRLYKLIWERFLASQMSPAVMDTMTVHLLN--NGIEFRA 405
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+V+F GF Y + ++ +HE L L G + E+ QH T
Sbjct: 406 TGSKVKFKGFMKVY---------VEGTDDKKKHEN-KYLPDLSEGMVVNAKEITPNQHFT 455
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LV+ +EE GIGRPSTYA TL +Q R YV + ++ P G +++ L
Sbjct: 456 QPPPRYTEARLVRTMEEQGIGRPSTYAPTLDTVQRRGYVQLDNKRFVPTELGEIINDILK 515
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F ++ D FTA ME +LD++ G TEW +L D++ F + + E+ +E
Sbjct: 516 EFFPQIIDIDFTAKMEEDLDSIEEGKTEWIKVLDDFYGGFRQ--------RLEKAEQEME 567
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
K A + +C CG +++K+ R+G F+ C+ P C
Sbjct: 568 KIEIRDEPAGI-----TCENCGH-EMVYKMGRYGK--FLACSNFPEC 606
>gi|414155234|ref|ZP_11411549.1| DNA topoisomerase 1 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411453284|emb|CCO09453.1| DNA topoisomerase 1 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 709
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/648 (39%), Positives = 369/648 (56%), Gaps = 45/648 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I YLG Y V S GH+RDL V +++F+ +
Sbjct: 3 KTLVIVESPAKAKSIGKYLGRNYTVKASMGHLRDLPKSQFGVDVENNFAPKYIAIRGKGD 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+K ++ A+ A+ ++LASDPDREGEAIAWH+ ++L + EN + R+ F+EIT +
Sbjct: 63 IIKDLRAAVKKADRVLLASDPDREGEAIAWHLTKLLD----IDEN-SPCRIEFNEITPKA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A+Q R ID + V A ARR LD L+G+N+SPLLWRK+ SAGRVQS A+ LICD
Sbjct: 118 IEQAVQQPRPIDLDRVNAQQARRILDRLVGYNLSPLLWRKVKKGLSAGRVQSVAVRLICD 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI F P+EYW++ A K F A L +++++++ I + + I
Sbjct: 178 REEEIRAFVPEEYWSLTAKFVKSGKSP-----FEAKLHKYRNQKIH---IANREAMEQIL 229
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A+F+V S++ +R P+ TS+LQQ+A+ KLNF++ TM +AQ+LYEG++L
Sbjct: 230 ADLKGASFRVNSVSRKEKLRHPAAPFTTSSLQQEASRKLNFTSRKTMVVAQQLYEGLELG 289
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GL+TY+RTD +S+ A +E R I ER+G + P++ PR+ K K Q+AHEA
Sbjct: 290 KEGPVGLVTYIRTDSTRVSETAVQEARKFINERFGPAYLPQQ-PRQAAGKGK-VQDAHEA 347
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT + R P + G L D KLY LIWSR +A QM PA + +DI D VFR+
Sbjct: 348 IRPTSVYRDPESVKGFLTNDQYKLYKLIWSRFLASQMAPALIDTTGIDIAAGD--YVFRA 405
Query: 770 SCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ S V+F GF Y E D G KE E+ +L L GD L + KQH
Sbjct: 406 AGSIVKFPGFMQVYIEGNDDGV---KEEEK--------LLPELAEGDKLQAKTLTPKQHF 454
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RY++ +LVK LEE GIGRPSTYA ++ +Q R YV +++ YP G +V L
Sbjct: 455 TQPPPRYTDATLVKVLEEKGIGRPSTYAPIVETIQKRGYVVRENKQFYPTELGMIVVELL 514
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
YF E+ + FTA+ME +LD ++ G +W G+L +++ F A+ I +VE
Sbjct: 515 KQYFPEIINIEFTAEMEEKLDRIAEGEQQWSGVLQEFYRPFVKTLATAEE-QIGKVEVAD 573
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E T D C CG ++ K+ R+G F+ C P C
Sbjct: 574 EVT------------DEICEQCGR-QMVIKLGRYGK--FLACPGFPAC 606
>gi|296330827|ref|ZP_06873302.1| DNA topoisomerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305674345|ref|YP_003866017.1| DNA topoisomerase I [Bacillus subtilis subsp. spizizenii str. W23]
gi|296151832|gb|EFG92706.1| DNA topoisomerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305412589|gb|ADM37708.1| DNA topoisomerase I [Bacillus subtilis subsp. spizizenii str. W23]
Length = 691
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 268/677 (39%), Positives = 373/677 (55%), Gaps = 58/677 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L+ L N + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLE----LDLN-SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++FKP+EYWT++ K + +TF F K +L + S + KDI +
Sbjct: 180 KEINDFKPEEYWTIDGTFLKGQ----ETFE-----ASFFGKNGKKLPLKSEADVKDILSQ 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LKGNKYTVEKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGRE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A E + I + YG G RK KK +NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISNTAVDEAAAFIDQAYGKEFLG--GKRKPAKKNENAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R P+ L +L D ++LY LIW R +A QM PA + + VD+ N + FR++
Sbjct: 349 PTSVLRKPSELKAVLGRDQMRLYKLIWERFVASQMAPAVLDTMSVDLTN--NGLTFRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y + + EE DR +L L+ GD + ++E +QH TQP
Sbjct: 407 SKVKFSGFMKVYVEGKDDQM-----EEKDR-----MLPDLQEGDTVLSKDIEPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G++V + +
Sbjct: 457 PPRYTEARLVKTLEELGIGRPSTYAPTLDTIQRRGYVGLDNKRFVPTELGQIVLELIMEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LDNV G EW ++ ++++ F A+S + +VE E
Sbjct: 517 FPEIINVEFTAKMEKDLDNVEEGNIEWVQIIDNFYTDFEKRVKKAES-EMKEVEIEPEYA 575
Query: 952 FGDSLFASLPNKDR----------------------------SCPVCGEGTLIFKVSRFG 983
D S P + CP CGEG ++ + S+
Sbjct: 576 GEDCELCSSPMVYKMGRYGKFLACSNFPDCRNTKPIVKQIGVKCPSCGEGNIVERKSK-K 634
Query: 984 AGYFIGCNQHPRCNYIA 1000
F GC+++P C +++
Sbjct: 635 KRVFYGCDRYPDCEFVS 651
>gi|242242532|ref|ZP_04796977.1| DNA topoisomerase I [Staphylococcus epidermidis W23144]
gi|418325849|ref|ZP_12937052.1| DNA topoisomerase I [Staphylococcus epidermidis VCU071]
gi|418328026|ref|ZP_12939156.1| DNA topoisomerase I [Staphylococcus epidermidis 14.1.R1.SE]
gi|418615547|ref|ZP_13178489.1| DNA topoisomerase I [Staphylococcus epidermidis VCU118]
gi|418630353|ref|ZP_13192835.1| DNA topoisomerase I [Staphylococcus epidermidis VCU128]
gi|418633990|ref|ZP_13196388.1| DNA topoisomerase I [Staphylococcus epidermidis VCU129]
gi|420174982|ref|ZP_14681428.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM061]
gi|420191703|ref|ZP_14697614.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM023]
gi|420199034|ref|ZP_14704718.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM031]
gi|242233959|gb|EES36271.1| DNA topoisomerase I [Staphylococcus epidermidis W23144]
gi|365227595|gb|EHM68788.1| DNA topoisomerase I [Staphylococcus epidermidis VCU071]
gi|365232413|gb|EHM73411.1| DNA topoisomerase I [Staphylococcus epidermidis 14.1.R1.SE]
gi|374816986|gb|EHR81177.1| DNA topoisomerase I [Staphylococcus epidermidis VCU118]
gi|374837894|gb|EHS01452.1| DNA topoisomerase I [Staphylococcus epidermidis VCU128]
gi|374837982|gb|EHS01539.1| DNA topoisomerase I [Staphylococcus epidermidis VCU129]
gi|394244515|gb|EJD89857.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM061]
gi|394265854|gb|EJE10501.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM023]
gi|394272720|gb|EJE17170.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM031]
Length = 689
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 253/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKHAKKAKKIFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KDSFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW++E K+S F A H+++K + + + + I +
Sbjct: 179 ENEIRNFKPEEYWSIEGEFRYKKS------KFTAKFLHYKNK---PYKLNNKDDVQKITE 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+N F++ +++ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ALNGDQFEITNVNRKEKTRYPAHPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISTSAKSEAQQYITDKYGEQYVSQ---RKSSGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ D I FR++
Sbjct: 346 RPTSTMRTPDDMKAFLTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++END+ L L GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKENDKENK---LPQLDKGDKVTATKIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFIPTELGEIVYEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ D+++ F A+S + ++E E
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDMNWRKVIGDFYNSFKQDVERAES-EMEKIEIKDEP 572
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 573 AGED------------CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|314936589|ref|ZP_07843936.1| DNA topoisomerase [Staphylococcus hominis subsp. hominis C80]
gi|313655208|gb|EFS18953.1| DNA topoisomerase [Staphylococcus hominis subsp. hominis C80]
Length = 689
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 252/646 (39%), Positives = 362/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDVEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +++ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKYAKKAKKVFLASDPDREGEAIAWHLSKILELEES-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKHPRGIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW++E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWSIEGEFRYKKS------KFTAKFLHYKNK---PYKLKTKKDVEKITS 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++N F++ +K+ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ELNGDAFEITNVNKKEKTRYPANPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A E +S I E+YG+ + + K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISQTAKDEAKSYIEEKYGTEYTSN----RKTKGKQGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ D I FR++
Sbjct: 346 RPTSTLRTPDEMKAYLTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K++++ND+ LN GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKDNDKENKLPKLNQ---GDKVTATQIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVYEQVKD 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ +++ F L + + E+ +EK
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDIGWRKVIDNFYGSF--------KLDVARAEEEMEK 565
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
A C VCG ++ K+ R+G F+ C+ P C
Sbjct: 566 VEIKDEPAG-----EDCEVCG-APMVIKMGRYGK--FMACSNFPDC 603
>gi|253573511|ref|ZP_04850854.1| DNA topoisomerase I [Paenibacillus sp. oral taxon 786 str. D14]
gi|251847039|gb|EES75044.1| DNA topoisomerase I [Paenibacillus sp. oral taxon 786 str. D14]
Length = 699
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 262/677 (38%), Positives = 369/677 (54%), Gaps = 54/677 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES KAK I YLG Y V S GHVRDL V ++DFS + +
Sbjct: 4 SLVIVESPAKAKTIGKYLGSKYIVKASMGHVRDLPKSQIGVEVENDFSPKYITIRGKGSV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A + + LA+DPDREGEAIAWH+ L + E T RVVF+EIT+ ++
Sbjct: 64 LKELKDASKKVKKIYLAADPDREGEAIAWHLAHALD----VDEKDT-CRVVFNEITKQAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
+ A + R I+ +LV A ARR LD L+G+ +SPLLW+K+ S GRVQS A+ +I DR
Sbjct: 119 RDAFKNPRPINMDLVNAQQARRILDRLVGYKVSPLLWKKIKKGLSFGRVQSVAVKIILDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI EF P+EYW++ A L S SF A +Q +++ + + + + I +
Sbjct: 179 ENEISEFVPEEYWSITAKLKTGGS------SFEAKFHQYQGEKIE---LKNEQQVQVILK 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I +A F V+ ++ +R P+ TS+LQQ+AA KLNF A TM +AQ+LYEGV L
Sbjct: 230 SIENAKFSVVDVKEKERLRHPAAPFTTSSLQQEAARKLNFRAAKTMSIAQQLYEGVDLGK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD I+ A +E + I E++G +APE PR+Y KK +AQ+AHEAI
Sbjct: 290 EGTVGLITYMRTDSTRIATSAQEEAKQYILEKFGEAYAPE-TPRQYSKKAASAQDAHEAI 348
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + D +LY LIW R MA QM A + + VDI + + FR+
Sbjct: 349 RPTSAMRDPESVKEFTTRDQYRLYKLIWDRFMASQMTSAVLDTMSVDIAAGEAT--FRAV 406
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S++ F GF Y + N++ + +E L L G+ L +E KQH TQ
Sbjct: 407 GSKIRFPGFMKVY---------VEGNDDGNANEDDKFLPPLTKGEELAKESIEPKQHFTQ 457
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEELGIGRPSTYA TL+ +Q R YV ++ + P G ++
Sbjct: 458 PPPRYTEARLVKTLEELGIGRPSTYAPTLETIQKRGYVAIEDKKFVPTELGELLIEQTEQ 517
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV------ 944
+F E+ D FTA ME +LD+V G +W +L +++ F A+
Sbjct: 518 FFPEILDVEFTAHMEEDLDHVEEGSEDWVRVLSEFYKSFEKRLRVAEEEMKEVEIEDEVS 577
Query: 945 EKMLEKT----------FGDSLFAS-LPN--------KD--RSCPVCGEGTLIFKVSRFG 983
+++ EK FG L S P KD +CP C EG ++ + S+ G
Sbjct: 578 DEICEKCGRPMVYKLGRFGKFLACSGFPECRNTKPIVKDIGVTCPKCKEGHVVERRSKKG 637
Query: 984 AGYFIGCNQHPRCNYIA 1000
F GC+++P C++++
Sbjct: 638 R-VFYGCDRYPECDFVS 653
>gi|354568570|ref|ZP_08987734.1| DNA topoisomerase I [Fischerella sp. JSC-11]
gi|353540293|gb|EHC09770.1| DNA topoisomerase I [Fischerella sp. JSC-11]
Length = 886
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 298/825 (36%), Positives = 424/825 (51%), Gaps = 86/825 (10%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGS--------------VRPDDD 396
++V+VES TKA+ I+ YL Y V S GHVRDL + V D D
Sbjct: 3 TLVIVESPTKARTIRNYLPKNYRVEASMGHVRDLPQSASEIPANVKGEKWAQLGVNVDAD 62
Query: 397 FSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENIT 456
F ++ VP + +K AL A LILA+D DREGE+I+WH+ ++L+ + +
Sbjct: 63 FEPLYVVPKDKKKVVTQLKEALKDASELILATDEDREGESISWHLYQLLKPK------VP 116
Query: 457 VARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSA 516
R+VFHEIT+ +IK ALQ R ID LV+A RR LD L+G+ +SPLLW+K+ SA
Sbjct: 117 TKRMVFHEITQEAIKKALQNCRSIDEQLVRAQETRRILDRLVGYTLSPLLWKKIAWGLSA 176
Query: 517 GRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRL-- 574
GRVQS A+ L+ +RE E FK YW ++A L ++ SF A L RL
Sbjct: 177 GRVQSVAVRLLVNRERERRAFKQATYWDLKATLTPPQTGKSKEQSFTAVLVTLAGTRLAT 236
Query: 575 --------------NQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTL 620
++ + + EA+ ++Q+++ ++V +R + RK P+ TSTL
Sbjct: 237 GSDFDPSTGKIIADRKVVLLNQAEAEALKQRLSDKTWKVTDIEERPVTRKPAPPFTTSTL 296
Query: 621 QQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIF 680
QQ+A KL SA TM++AQ LYE G ITYMRTD +H+S++A RS +
Sbjct: 297 QQEANRKLRLSARDTMRIAQSLYE---------QGYITYMRTDSVHLSEQAIAAARSCVE 347
Query: 681 ERYGSHH-APEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWS 739
+ YG + +P+ PR+Y K K AQEAHEAIRP +GL D + LKLY LIW
Sbjct: 348 QLYGKQYLSPQ--PRQYTTKSKGAQEAHEAIRPAGSSFRTPQETGLSDRE-LKLYDLIWK 404
Query: 740 RTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEEN 799
RT+ACQM + QI V + D FRSS R++F G+ AY + ++ E
Sbjct: 405 RTVACQMADSRQTQITVQLQVEDAG--FRSSGKRIDFPGYLRAY-------VEGSDDPEA 455
Query: 800 DRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTL 859
+ IL LK GD ++E +H TQPPARY+E +LVK LE GIGRPSTYAS +
Sbjct: 456 ALEDQEIILPDLKVGDHPDCQDLETVKHETQPPARYTEATLVKTLESEGIGRPSTYASII 515
Query: 860 KVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWK 919
+ D+ Y + + L P F V+ L YF +V D SFT+ ME LD+++AG EW
Sbjct: 516 GTIIDKGYAQLTNNALIPSFTAFAVTELLEKYFHDVVDPSFTSKMEQTLDDIAAGEAEW- 574
Query: 920 GLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKV 979
+ Y +F ++L + Q E ++ N+ R+ + I ++
Sbjct: 575 ---LPYLRQFYLGDNGLETL-VKQKEDQIDA-----------NQARTVELENLNAKI-RI 618
Query: 980 SRFGAGYFIGCNQHPRCNYIAKTLYG---DDDEEDTLQRNTNVDEPKLIGHHPASKEKVL 1036
+FG + I + L D + +TL R P +G HP + E +
Sbjct: 619 GKFGPYIEVENGDGVVTASIPRDLTPADLDPQKVETLLRQ-KTSGPDEVGRHPETGEPIY 677
Query: 1037 LKSGPYGFYVQLGEDRTGYLPKRASVSHIKDV--DSITLEDALELLRYPVNLGNHPKDGQ 1094
+ GPYG YVQLG D++ PK S K V + +TL+ A+ LL P LG HP+ G
Sbjct: 678 VLIGPYGPYVQLG-DKSDENPKPKQASLPKGVKPEDVTLDMAVGLLSLPRTLGTHPETGA 736
Query: 1095 PIMLRLARAGFSVRHRRTIASVPKNMKPND----VTLEKALEFLS 1135
I L R G + H +++K D ++LE+ALE LS
Sbjct: 737 TIQANLGRFGPYIVHNAKEGKDYRSLKAGDDVLTISLERALELLS 781
>gi|420176914|ref|ZP_14683308.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM057]
gi|420179507|ref|ZP_14685798.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM053]
gi|394251821|gb|EJD96897.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM057]
gi|394253711|gb|EJD98707.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM053]
Length = 689
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 253/646 (39%), Positives = 362/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKHAKKAKKIFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KDSFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW++E K+S F A H+++K + + + I +
Sbjct: 179 ENEIRNFKPEEYWSIEGEFRYKKS------KFTAKFLHYKNK---PYKLNNKDHVQKITE 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+N F++ +++ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ALNGDQFEITNVNRKEKTRYPAHPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISTSAKSEAKQYITDKYGEQYVSQ---RKSSGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ D I FR++
Sbjct: 346 RPTSTMRTPDDMKAFLTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++END+ L L GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKENDKENK---LPQLDKGDKVTATKIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFIPTELGEIVYEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ D+++ F A+S + ++E E
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDMNWRKVIGDFYNSFKQDVERAES-EMEKIEIKDEP 572
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 573 AGED------------CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|418411669|ref|ZP_12984935.1| DNA topoisomerase 1 [Staphylococcus epidermidis BVS058A4]
gi|420163414|ref|ZP_14670161.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM095]
gi|420167606|ref|ZP_14674258.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM087]
gi|394235103|gb|EJD80677.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM095]
gi|394237634|gb|EJD83120.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM087]
gi|410891252|gb|EKS39049.1| DNA topoisomerase 1 [Staphylococcus epidermidis BVS058A4]
Length = 689
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 253/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKHAKKAKKIFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KDSFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW++E K+S F A H+++K + + + + I +
Sbjct: 179 ENEIRNFKPEEYWSIEGEFRYKKS------KFTAKFLHYKNK---PYKLNNKDDVQRITE 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+N F++ +++ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ALNGDQFEITNVNRKEKTRYPAHPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISTSAKSEAQQYITDKYGEQYVSQ---RKSSGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ D I FR++
Sbjct: 346 RPTSTMRTPDDMKAFLTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++END+ L L GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKENDKENK---LPQLDKGDKVTATKIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFIPTELGEIVYEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ D+++ F A+S + ++E E
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDMNWRKVIGDFYNSFKQDVERAES-EMEKIEIKDEP 572
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 573 AGED------------CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|420211860|ref|ZP_14717216.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM001]
gi|394280370|gb|EJE24651.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM001]
Length = 689
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 253/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKHAKKAKKIFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KDSFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW++E K+S F A H+++K + + + + I +
Sbjct: 179 ENEIRNFKPEEYWSIEGEFRYKKS------KFTAKFLHYKNK---PYKLNNKDDVQRITE 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+N F++ +++ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ALNGDQFEITNVNRKEKTRYPAHPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISTSAKSEAQQYITDKYGEQYVSQ---RKSSGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ D I FR++
Sbjct: 346 RPTSTMRTPDDMKSFLTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++END+ L L GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKENDKENK---LPQLDKGDKVTATKIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFIPTELGEIVYEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ D+++ F A+S + ++E E
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDMNWRKVIGDFYNSFKQDVERAES-EMEKIEIKDEP 572
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 573 AGED------------CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|445059831|ref|YP_007385235.1| DNA topoisomerase I [Staphylococcus warneri SG1]
gi|443425888|gb|AGC90791.1| DNA topoisomerase I [Staphylococcus warneri SG1]
Length = 689
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 252/646 (39%), Positives = 365/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKKVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KDSFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALKLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKS------KFTAKFLHYKNK---PYKLNKKEDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDEFEITNVNKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMIAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD+A E ++ I ++YG+ + + RK K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISDQAKSEAKNYIIDKYGNEYVSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + I +D+ D I FR++
Sbjct: 346 RPTSTLRTPEEMKSFLTRDQHRLYKLIWERFVASQMAPAILDTIALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++++D+ L L+ GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VETKDDKDSDKENK---LPKLEQGDKVTATQIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFMPTELGEIVYEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ D+++ F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDMNWRKVVGDFYNSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|150016070|ref|YP_001308324.1| DNA topoisomerase I [Clostridium beijerinckii NCIMB 8052]
gi|149902535|gb|ABR33368.1| DNA topoisomerase I [Clostridium beijerinckii NCIMB 8052]
Length = 697
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 254/649 (39%), Positives = 365/649 (56%), Gaps = 48/649 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KAK I YLG Y V S GHVRDL + V +++++ +
Sbjct: 2 GQKLVIVESPAKAKTIGKYLGKNYIVEASMGHVRDLPKSTLGVDIENNYTPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+ ++ A AE + LA+DPDREGEAI+WH+ +L+ + E+ T R+VF+E+T+
Sbjct: 62 ELIDKLRKAAKKAEKVYLATDPDREGEAISWHLANILK----ISEDET-CRIVFNEVTKT 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K +++ AR+ID +LV A ARR LD L+G+ ISP+LW+ + SAGRVQSAAL LIC
Sbjct: 117 AVKASIKQARKIDLDLVDAQQARRILDRLVGYEISPILWKNVKWGLSAGRVQSAALKLIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI+EF P+EYW+++ L K++ FP L+ ++ K+ + IG+ + I
Sbjct: 177 DREKEINEFIPKEYWSIDCTLKKEKKK------FPVRLSTYKGKK---IEIGNEETSNGI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+++N NF V+K+ K+ +NP P+ TSTLQQDA KLNF TM +AQ LYEGV+
Sbjct: 228 IKELNKGNF-VVKSIKKGKKNRNPLPPFTTSTLQQDANRKLNFMTKRTMSIAQVLYEGVE 286
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ + GLITYMRTD + IS+EA + + I YG + P G + +K KN Q+AH
Sbjct: 287 VKNYGTVGLITYMRTDSVRISEEAQESAKEFIEGSYGKEYLP--GAPRVYKGKKNIQDAH 344
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT + P + L + KLYSLIW+R +A QM + +DI N D F
Sbjct: 345 EAIRPTYVEITPEIAKENLTPEQYKLYSLIWNRFVASQMASCELNTHSIDIENGDYK--F 402
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++S S + F GF YE N+ E +L LK + L + + QH
Sbjct: 403 KASGSVISFDGFMKIYE------------YSNEEDENSVMLPELKENEELKVESLNGTQH 450
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQP RY+E S VK LEE GIGRPSTY T+ L RNYV + + L P G +V+
Sbjct: 451 FTQPQPRYTEASFVKLLEEKGIGRPSTYVPTISTLLGRNYVIREKKNLIPTELGEIVNNI 510
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+S YF ++ D FTADME +LD+V G W ++ +++S + I + EK
Sbjct: 511 VSEYFRQIVDVDFTADMERKLDDVEEGSENWTQIVEEFFSPL--------KVAIEKAEKE 562
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ K + + D C CG ++ K RFG F+ C +P C
Sbjct: 563 ISKVVIEDKVS-----DVKCEKCGR-MMVIKRGRFGE--FLACPGYPEC 603
>gi|350265926|ref|YP_004877233.1| DNA topoisomerase I [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349598813|gb|AEP86601.1| DNA topoisomerase I [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 691
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 266/677 (39%), Positives = 371/677 (54%), Gaps = 58/677 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L L N + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLD----LDLN-SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++FKP+EYWT++ K + +TF F K +L + S + KDI +
Sbjct: 180 KEINDFKPEEYWTIDGTFLKGQ----ETFE-----ASFFGKNGKKLPLKSEADVKDILSQ 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LKGNKYTVEKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGRE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A E + I + YG G RK KK +NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISNTAVDEAAAFIDQAYGKEFLG--GKRKPAKKNENAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R P+ L +L D ++LY LIW R +A QM PA + + VD+ N + FR++
Sbjct: 349 PTSVLRKPSELKAVLGRDQMRLYKLIWERFVASQMAPAVLDTMSVDLTN--NGLTFRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y E +++ E +L L+ GD + ++E +QH TQP
Sbjct: 407 SKVKFSGFMKVY----------VEGKDDQMEEKDRMLPDLQEGDTVLSKDIEPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G++V + +
Sbjct: 457 PPRYTEARLVKTLEELGIGRPSTYAPTLDTIQRRGYVGLDNKRFVPTELGQIVLELIMEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LDNV G EW ++ ++++ F A+S + +VE E
Sbjct: 517 FPEIINVEFTAKMEKDLDNVEEGNIEWVQIIDNFYTDFEKRVKKAES-EMKEVEIEPEYA 575
Query: 952 FGDSLFASLPNKDR----------------------------SCPVCGEGTLIFKVSRFG 983
D S P + CP CGEG ++ + S+
Sbjct: 576 GEDCELCSSPMVYKMGRYGKFLACSNFPDCRNTKPIVKQIGVKCPSCGEGNIVERKSK-K 634
Query: 984 AGYFIGCNQHPRCNYIA 1000
F GC+++P C +++
Sbjct: 635 KRVFYGCDRYPDCEFVS 651
>gi|27467844|ref|NP_764481.1| DNA topoisomerase I [Staphylococcus epidermidis ATCC 12228]
gi|57866716|ref|YP_188398.1| DNA topoisomerase I [Staphylococcus epidermidis RP62A]
gi|251810681|ref|ZP_04825154.1| DNA topoisomerase I [Staphylococcus epidermidis BCM-HMP0060]
gi|282876318|ref|ZP_06285185.1| DNA topoisomerase [Staphylococcus epidermidis SK135]
gi|293366786|ref|ZP_06613462.1| DNA topoisomerase TopA [Staphylococcus epidermidis M23864:W2(grey)]
gi|417647428|ref|ZP_12297268.1| DNA topoisomerase I [Staphylococcus epidermidis VCU144]
gi|417656565|ref|ZP_12306248.1| DNA topoisomerase I [Staphylococcus epidermidis VCU028]
gi|417658980|ref|ZP_12308593.1| DNA topoisomerase I [Staphylococcus epidermidis VCU045]
gi|417909842|ref|ZP_12553575.1| DNA topoisomerase I [Staphylococcus epidermidis VCU037]
gi|417910850|ref|ZP_12554566.1| DNA topoisomerase I [Staphylococcus epidermidis VCU105]
gi|417913476|ref|ZP_12557143.1| DNA topoisomerase I [Staphylococcus epidermidis VCU109]
gi|418605348|ref|ZP_13168673.1| DNA topoisomerase I [Staphylococcus epidermidis VCU041]
gi|418609906|ref|ZP_13173040.1| DNA topoisomerase I [Staphylococcus epidermidis VCU065]
gi|418612162|ref|ZP_13175208.1| DNA topoisomerase I [Staphylococcus epidermidis VCU117]
gi|418616539|ref|ZP_13179463.1| DNA topoisomerase I [Staphylococcus epidermidis VCU120]
gi|418624537|ref|ZP_13187212.1| DNA topoisomerase I [Staphylococcus epidermidis VCU125]
gi|418626784|ref|ZP_13189380.1| DNA topoisomerase I [Staphylococcus epidermidis VCU126]
gi|418664766|ref|ZP_13226232.1| DNA topoisomerase I [Staphylococcus epidermidis VCU081]
gi|419768070|ref|ZP_14294207.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-250]
gi|419770886|ref|ZP_14296948.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-K]
gi|420172751|ref|ZP_14679249.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM067]
gi|420182919|ref|ZP_14689052.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM049]
gi|420187546|ref|ZP_14693566.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM039]
gi|420194013|ref|ZP_14699842.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM021]
gi|420197141|ref|ZP_14702865.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM020]
gi|420202037|ref|ZP_14707632.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM018]
gi|420206431|ref|ZP_14711941.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM008]
gi|420209472|ref|ZP_14714909.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM003]
gi|420214271|ref|ZP_14719550.1| DNA topoisomerase I [Staphylococcus epidermidis NIH05005]
gi|420216101|ref|ZP_14721323.1| DNA topoisomerase I [Staphylococcus epidermidis NIH05001]
gi|420220031|ref|ZP_14725021.1| DNA topoisomerase I [Staphylococcus epidermidis NIH04008]
gi|420221959|ref|ZP_14726884.1| DNA topoisomerase I [Staphylococcus epidermidis NIH08001]
gi|420227040|ref|ZP_14731813.1| DNA topoisomerase I [Staphylococcus epidermidis NIH05003]
gi|420229363|ref|ZP_14734069.1| DNA topoisomerase I [Staphylococcus epidermidis NIH04003]
gi|420234409|ref|ZP_14738972.1| DNA topoisomerase I [Staphylococcus epidermidis NIH051475]
gi|421607249|ref|ZP_16048495.1| DNA topoisomerase I [Staphylococcus epidermidis AU12-03]
gi|81674903|sp|Q5HPU2.1|TOP1_STAEQ RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|81843829|sp|Q8CSU3.1|TOP1_STAES RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|27315389|gb|AAO04523.1|AE016747_20 DNA topoisomerase I topA-like protein [Staphylococcus epidermidis
ATCC 12228]
gi|57637374|gb|AAW54162.1| DNA topoisomerase I [Staphylococcus epidermidis RP62A]
gi|251805841|gb|EES58498.1| DNA topoisomerase I [Staphylococcus epidermidis BCM-HMP0060]
gi|281295343|gb|EFA87870.1| DNA topoisomerase [Staphylococcus epidermidis SK135]
gi|291319087|gb|EFE59457.1| DNA topoisomerase TopA [Staphylococcus epidermidis M23864:W2(grey)]
gi|329724349|gb|EGG60861.1| DNA topoisomerase I [Staphylococcus epidermidis VCU144]
gi|329736226|gb|EGG72498.1| DNA topoisomerase I [Staphylococcus epidermidis VCU028]
gi|329736619|gb|EGG72885.1| DNA topoisomerase I [Staphylococcus epidermidis VCU045]
gi|341652451|gb|EGS76239.1| DNA topoisomerase I [Staphylococcus epidermidis VCU037]
gi|341655038|gb|EGS78774.1| DNA topoisomerase I [Staphylococcus epidermidis VCU105]
gi|341655758|gb|EGS79482.1| DNA topoisomerase I [Staphylococcus epidermidis VCU109]
gi|374402445|gb|EHQ73470.1| DNA topoisomerase I [Staphylococcus epidermidis VCU041]
gi|374406242|gb|EHQ77145.1| DNA topoisomerase I [Staphylococcus epidermidis VCU065]
gi|374410212|gb|EHQ80973.1| DNA topoisomerase I [Staphylococcus epidermidis VCU081]
gi|374820044|gb|EHR84158.1| DNA topoisomerase I [Staphylococcus epidermidis VCU117]
gi|374820617|gb|EHR84693.1| DNA topoisomerase I [Staphylococcus epidermidis VCU120]
gi|374827766|gb|EHR91627.1| DNA topoisomerase I [Staphylococcus epidermidis VCU125]
gi|374831328|gb|EHR95070.1| DNA topoisomerase I [Staphylococcus epidermidis VCU126]
gi|383360991|gb|EID38374.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-250]
gi|383362435|gb|EID39787.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus IS-K]
gi|394241428|gb|EJD86842.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM067]
gi|394249382|gb|EJD94595.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM049]
gi|394255988|gb|EJE00924.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM039]
gi|394265948|gb|EJE10594.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM020]
gi|394266711|gb|EJE11336.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM021]
gi|394270010|gb|EJE14533.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM018]
gi|394278270|gb|EJE22587.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM008]
gi|394278919|gb|EJE23231.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM003]
gi|394283636|gb|EJE27801.1| DNA topoisomerase I [Staphylococcus epidermidis NIH05005]
gi|394287038|gb|EJE31012.1| DNA topoisomerase I [Staphylococcus epidermidis NIH04008]
gi|394289990|gb|EJE33860.1| DNA topoisomerase I [Staphylococcus epidermidis NIH08001]
gi|394292551|gb|EJE36293.1| DNA topoisomerase I [Staphylococcus epidermidis NIH05001]
gi|394297541|gb|EJE41138.1| DNA topoisomerase I [Staphylococcus epidermidis NIH05003]
gi|394299129|gb|EJE42680.1| DNA topoisomerase I [Staphylococcus epidermidis NIH04003]
gi|394304212|gb|EJE47619.1| DNA topoisomerase I [Staphylococcus epidermidis NIH051475]
gi|406657041|gb|EKC83434.1| DNA topoisomerase I [Staphylococcus epidermidis AU12-03]
Length = 689
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 253/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKHAKKAKKIFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KDSFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW++E K+S F A H+++K + + + + I +
Sbjct: 179 ENEIRNFKPEEYWSIEGEFRYKKS------KFTAKFLHYKNK---PYKLNNKDDVQRITE 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+N F++ +++ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ALNGDQFEITNVNRKEKTRYPAHPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISTSAKSEAQQYINDKYGEQYVSQ---RKSSGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ D I FR++
Sbjct: 346 RPTSTMRTPDDMKAFLTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++END+ L L GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKENDKENK---LPQLDKGDKVTATKIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFIPTELGEIVYEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ D+++ F A+S + ++E E
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDMNWRKVIGDFYNSFKQDVERAES-EMEKIEIKDEP 572
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 573 AGED------------CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|145220517|ref|YP_001131226.1| DNA topoisomerase I [Chlorobium phaeovibrioides DSM 265]
gi|145206681|gb|ABP37724.1| DNA topoisomerase I [Chlorobium phaeovibrioides DSM 265]
Length = 803
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 272/772 (35%), Positives = 415/772 (53%), Gaps = 65/772 (8%)
Query: 340 TQNPLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSM 399
+ P ++++VVES +KAK I YLGD Y V S GH++DL + + D+ +
Sbjct: 3 VKTPSLSAKNRTLIVVESPSKAKTINKYLGDGYAVFASVGHIKDLPKKEIGLDFDNHYEP 62
Query: 400 VWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVAR 459
+EV + ++ +K + A +++A+DPDREGEAIAWHI + + V R
Sbjct: 63 SYEVIAGKDKVVRQLKKLSAEASAVMIATDPDREGEAIAWHIANEIGKTSK-----PVTR 117
Query: 460 VVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRV 519
V+F+EIT+++I A+ R+ID LV++ R+ LD ++G+ ISP LW + SAGRV
Sbjct: 118 VMFNEITKSAILEAIADPRQIDYKLVRSQQTRQGLDKIVGYRISPFLWNVVMRGLSAGRV 177
Query: 520 QSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI 579
QS AL LIC+REMEI+ F+ QEYWT+ A E S F A L ++ + +
Sbjct: 178 QSVALRLICEREMEINRFEIQEYWTIAADFITSEKES-----FKARLISINGEKPD---L 229
Query: 580 GSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLA 639
+ A+ ++ N+++ + R+ R+ P P+ TS LQQ A+N+L F + TM+ A
Sbjct: 230 KNQASAEAAAALVSKGNYRLKAIAPRTQQRRAPLPFTTSLLQQAASNQLGFGSKKTMRAA 289
Query: 640 QKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKK 699
Q+LYEG+ L A GLITYMRTD + I DEA + R I +G + G K
Sbjct: 290 QQLYEGIDLGSEGATGLITYMRTDSIRIGDEAKGQARHFIENTFGKEYIGFGGAAA--KS 347
Query: 700 VKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG 759
KNAQ+AHEAIRPT + R P L L D +LY LIW R +A M PA + Q +VDI
Sbjct: 348 SKNAQDAHEAIRPTSVNRRPEDLKPYLSTDQYRLYDLIWKRFVAAMMAPAKIEQTRVDIA 407
Query: 760 NADESIVFRSSCSRVEFLGFQAAYEDVDAGAI--RYKENEENDRHEAFAILNSLKTGDPL 817
+ + I FR++ SRV F GF + D + A R +E ++ + + L+ DPL
Sbjct: 408 DPEARISFRANGSRVLFPGFMKVFNDQEELAYEERKSTKDEGEKEQTVRLPKVLRENDPL 467
Query: 818 YLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYP 877
LG ++ +Q T+PPAR+SE +LVK L+ GIGRPSTYAS LQDR YV ++ + + P
Sbjct: 468 NLGPIDSRQSFTRPPARFSEATLVKDLDNYGIGRPSTYASIFSTLQDRRYVELQKKKIIP 527
Query: 878 EFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQ 937
G VS L F E+ + FTA ME ELD V+ G +++ +L RF Y
Sbjct: 528 TVLGMDVSEILVSNFPELFNVDFTAGMENELDKVAVGEDDYESVL----DRF--YKPLEA 581
Query: 938 SLHIHQVEKMLEKTFGDSLFASLPNKDRS-CPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+L + + ++ + N+D + C CGEG +I K ++ +G F+GC+++P+C
Sbjct: 582 TLSARKEDPVIPQ-----------NRDAAPCEKCGEGRMIVKWTQ--SGKFLGCSRYPKC 628
Query: 997 NYIAKTLYGDDDEEDTLQRNTNVDEPKLIG-HHPASKE-KVLLKSGPYGFYVQLGEDRTG 1054
+ + TN ++PK G P+ E +LL++G +G ++
Sbjct: 629 R-------------NNIPIATNKEKPKDTGILCPSCNEGHMLLRNGRHGAFLAC------ 669
Query: 1055 YLPKRASVSHIKDVDSITLEDALELLRYPVNLGNH--PKDGQPIMLRLARAG 1104
+S K + ++ + +E ++ P L + PK G P+ LR+ + G
Sbjct: 670 -----SSYPKCKGLLNLGKQRQIEPMKLPPVLTDLTCPKCGAPMNLRIGKRG 716
>gi|420231721|ref|ZP_14736366.1| DNA topoisomerase I [Staphylococcus epidermidis NIH051668]
gi|394302263|gb|EJE45711.1| DNA topoisomerase I [Staphylococcus epidermidis NIH051668]
Length = 690
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 253/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKHAKKAKKIFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KDSFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW++E K+S F A H+++K + + + + I +
Sbjct: 179 ENEIRNFKPEEYWSIEGEFRYKKS------KFTAKFLHYKNK---PYKLNNKDDVQRITE 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+N F++ +++ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ALNGDQFEITNVNRKEKTRYPAHPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISTSAKSEAQQYINDKYGEQYVSQ---RKSSGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ D I FR++
Sbjct: 346 RPTSTMRTPDDMKAFLTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++END+ L L GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKENDKENK---LPQLDKGDKVTATKIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFIPTELGEIVYEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ D+++ F A+S + ++E E
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDMNWRKVIGDFYNSFKQDVERAES-EMEKIEIKDEP 572
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 573 AGED------------CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|268317259|ref|YP_003290978.1| DNA topoisomerase I [Rhodothermus marinus DSM 4252]
gi|262334793|gb|ACY48590.1| DNA topoisomerase I [Rhodothermus marinus DSM 4252]
Length = 858
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 298/833 (35%), Positives = 434/833 (52%), Gaps = 91/833 (10%)
Query: 350 KSVVVVESVTKAKVIQGYL-GDMYEVLPSYGHVRDLAARSG--------------SVRPD 394
K +VVVES TKA+ I+ +L D + V S GH+RDL A + VR D
Sbjct: 2 KRLVVVESPTKARTIRNFLPKDGFRVEASMGHIRDLPASAAEVPAHLKHEEWARLGVRID 61
Query: 395 DDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHEN 454
DF ++ +P ++ +K AL A+ L +A+D DREGE+I WH+VE+L+ +
Sbjct: 62 RDFEPLYVIPRDKRKVVQQLKEALKEADELYIATDEDREGESIGWHLVEVLKPK------ 115
Query: 455 ITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQ 514
+ V R+VFHEIT +I+ AL+ R+ID NLV+A ARR LD L+G+ +SP+LWRK+
Sbjct: 116 VPVRRMVFHEITREAIEQALRNPRDIDHNLVEAQEARRILDRLVGYLVSPVLWRKIAPRL 175
Query: 515 SAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRL 574
SAGRVQSAA+ L+ RE E F P YW ++A+L++ +F A LTH R+
Sbjct: 176 SAGRVQSAAVRLLVLREKERIAFVPATYWDLKALLEQAGQ------TFEAVLTHVGGIRV 229
Query: 575 ----------NQLSIG----------SHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTP 614
+L G +A+++ +++ + V +R + R P
Sbjct: 230 AGGKDFDEHTGRLKEGLVAGRDVILLDEAQARELAERLRHEGWVVADVEERVVTRSPAPP 289
Query: 615 YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKE 674
+ITSTLQQ+A+ KL SA TM++AQ+LYE G ITYMRTD H+S EA +
Sbjct: 290 FITSTLQQEASRKLGLSARQTMQIAQRLYE---------QGYITYMRTDSTHLSQEAIEA 340
Query: 675 IRSLIFERYGSHH-APEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKL 733
R I ERYG + +P+ PR+Y +V+NAQEAHEAIRP A GL D L
Sbjct: 341 SRRTIVERYGKEYLSPQ--PRQYQSRVRNAQEAHEAIRPAGRAMKTAEELGLTGIDA-AL 397
Query: 734 YSLIWSRTMACQMQPATVGQIQVDIGNADESIV--FRSSCSRVEFLGFQAAYEDVDAGAI 791
Y LIW RT+A QM A + + V + D + FR+S VEF GF AY +
Sbjct: 398 YDLIWKRTVASQMADARLRLLTVHLEAGDREPIARFRASGRTVEFPGFFRAY-------V 450
Query: 792 RYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGR 851
++ E + L LK GD +VE ++H T+PPARY+E +LVK LE+ GIGR
Sbjct: 451 EGSDDPEAALEDRDQPLPPLKKGDRPRCVQVESRRHETRPPARYTEATLVKTLEQEGIGR 510
Query: 852 PSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNV 911
PSTYA+ + + R Y + L P F + L F ++ D FTA ME LD +
Sbjct: 511 PSTYATIIDTILQRGYAVRRGNQLVPTFMAFATNNLLEACFEKLVDLGFTAQMEEALDEI 570
Query: 912 SAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCG 971
+ G + V Y +F +Q E+ LE+ ++L P + +
Sbjct: 571 AQG----RQKTVPYLRQF------------YQGEEGLERMIDEALRRVDPREVSTIRFPQ 614
Query: 972 EGTLIFKVSRFGAGYFIGC--NQHPRCNYIAKTLYGDDDEE--DTLQRNTNVDEPKLIGH 1027
+ +V ++G Y G Q + GD E + + R +++ +++G
Sbjct: 615 WEPYVVRVGKYGP-YVEGPVDGQIVTASLPPDLAPGDVTREKLEQILREGQIED-RVLGI 672
Query: 1028 HPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLG 1087
P + VLL+ GPYG+YVQLG+D PKR ++ + + LE A LL+ P LG
Sbjct: 673 DPETGMPVLLRRGPYGYYVQLGDDEQAGKPKRVALPPGMEPAVVDLETARALLQLPRTLG 732
Query: 1088 NHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKDVR 1140
HP+ GQP+++ + R G V+H RT AS+ + + LE+ALE L+ K+ R
Sbjct: 733 THPETGQPVLVGIGRYGPYVQHGRTFASLKEEDDVFTIDLERALELLAEKEAR 785
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 61/112 (54%), Gaps = 14/112 (12%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELL- 1080
P+ +G HP + + VL+ G YG YVQ G RT AS+ DV +I LE ALELL
Sbjct: 728 PRTLGTHPETGQPVLVGIGRYGPYVQHG--RTF-----ASLKEEDDVFTIDLERALELLA 780
Query: 1081 -----RYPVN-LGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVT 1126
P+ LG HP+ G+P+ + R G V+H RT AS+P+ P +T
Sbjct: 781 EKEARSRPLRVLGTHPETGEPVEVWEGRYGPYVKHGRTNASLPEGRAPEAIT 832
>gi|420204172|ref|ZP_14709732.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM015]
gi|394274186|gb|EJE18611.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM015]
Length = 689
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 253/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKHAKKAKKIFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KDSFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW++E K+S F A H+++K + + + + I +
Sbjct: 179 ENEIRNFKPEEYWSIEGEFRYKKS------KFTAKFLHYKNK---PYKLNNKDDVQKITE 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+N F++ +++ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ALNGDQFEITNVNRKEKTRYPAHPFTTSTLQQEAARKLNFKARKTMILAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISTSAKSEAQQYITDKYGEQYVSQ---RKSSGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ D I FR++
Sbjct: 346 RPTSTMRTPDDMKAFLTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++END+ L L GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKENDKENK---LPQLDKGDKVTATKIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFIPTELGEIVYEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ D+++ F A+S + ++E E
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDMNWRKVIGDFYNSFKQDVERAES-EMEKIEIKDEP 572
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 573 AGED------------CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|418628975|ref|ZP_13191491.1| DNA topoisomerase I [Staphylococcus epidermidis VCU127]
gi|374834969|gb|EHR98600.1| DNA topoisomerase I [Staphylococcus epidermidis VCU127]
Length = 689
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 253/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKHAKKAKKIFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KDSFKHPRGIEKDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW++E K+S F A H+++K + + + + I +
Sbjct: 179 ENEIRNFKPEEYWSIEGEFRYKKS------KFTAKFLHYKNK---PYKLNNKDDVQRITE 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+N F++ +++ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ALNGDQFEITNVNRKEKTRYPAHPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISTSAKSEAQQYINDKYGEQYVSQ---RKSSGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ D I FR++
Sbjct: 346 RPTSTMRTPDDMKAFLTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++END+ L L GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKENDKENK---LPQLDKGDKVTATKIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFIPTELGEIVYEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ D+++ F A+S + ++E E
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDMNWRKVIGDFYNSFKQDVERAES-EMEKIEIKDEP 572
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 573 AGED------------CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|386586055|ref|YP_006082457.1| DNA topoisomerase I [Streptococcus suis D12]
gi|389856601|ref|YP_006358844.1| DNA topoisomerase I [Streptococcus suis ST1]
gi|417092818|ref|ZP_11957372.1| DNA topoisomerase I [Streptococcus suis R61]
gi|353532178|gb|EHC01852.1| DNA topoisomerase I [Streptococcus suis R61]
gi|353738201|gb|AER19209.1| DNA topoisomerase I [Streptococcus suis D12]
gi|353740319|gb|AER21326.1| DNA topoisomerase I [Streptococcus suis ST1]
Length = 697
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 251/649 (38%), Positives = 366/649 (56%), Gaps = 57/649 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D++++ +
Sbjct: 16 NLVIVESPAKAKTIEKYLGKNYKVVASVGHIRDLKKSSMSIDFDNNYAPEYINIRGKGPL 75
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ S+K A+ + LASDPDREGEAI+WH+ +L DA +N RVVF+EIT+ ++
Sbjct: 76 INSLKKEAKNAKQVFLASDPDREGEAISWHLAHILGL-DANDKN----RVVFNEITKDAV 130
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A Q R I+ +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 131 KNAFQEPRAINLDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 190
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT++A K F A K+ I ++ + K+I
Sbjct: 191 ENEISNFKPEEYWTIDATFKKGSK------KFQASFYGIDGKK---TKIENNEQVKEILA 241
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+++ +F V + ++ R P PY TST+Q DAANK+NF TM +AQ+LYEGV L
Sbjct: 242 RLDGDDFLVEQVERKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGVSLGT 301
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A + I ER+G+ ++ K+ KVKN AQ+AH
Sbjct: 302 GGTQGLITYMRTDSTRISPVAQAQAADFITERFGATYS------KHGNKVKNASGAQDAH 355
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+++ P ++ LD+D L+LY+LIW+R +A QM A + V +G IVF
Sbjct: 356 EAIRPSNVNLTPESIAKYLDKDQLRLYTLIWNRFVASQMAAAVFDTMSVRLGQ--NGIVF 413
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L ++ GD + +QH
Sbjct: 414 AANGSQVKFDGYMAVYNDADKN----------------KMLPDMEQGDTVVRASTNPEQH 457
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 458 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVKLAAKRFEPTELGEIVNKL 517
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ +F ++ + FTADME +LD+V G +W+ ++ ++ F + + + E+
Sbjct: 518 IVEFFPDIVNVKFTADMEQKLDDVEIGKEQWQKVIDGFYQPF--------KVELSKAEEQ 569
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+EK A C VCG ++ K+ RFG F C+ P C
Sbjct: 570 MEKIQIKDEPAGF-----DCDVCGH-EMVIKLGRFGK--FYACSNFPDC 610
>gi|410658737|ref|YP_006911108.1| DNA topoisomerase I [Dehalobacter sp. DCA]
gi|410661725|ref|YP_006914096.1| DNA topoisomerase I [Dehalobacter sp. CF]
gi|409021092|gb|AFV03123.1| DNA topoisomerase I [Dehalobacter sp. DCA]
gi|409024081|gb|AFV06111.1| DNA topoisomerase I [Dehalobacter sp. CF]
Length = 697
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 254/647 (39%), Positives = 370/647 (57%), Gaps = 41/647 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I +L Y V S GH+RDL V D +F +
Sbjct: 3 KTLVIVESPAKAKSISKFLSKNYLVKASMGHLRDLPKSQIGVDIDHNFEPKYIAIRGRGD 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+K +K A A+ ++LASDPDREGEAIAWH+ +L L+ ++RV FHEIT+ +
Sbjct: 63 LVKELKAAAKTADRVLLASDPDREGEAIAWHLTHLL----GLNPE-ELSRVEFHEITKPT 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A++ R++D +LV A ARR LD L+G+ +SPLLWRK+ SAGRVQS A+ +ICD
Sbjct: 118 IQNAVKNPRKLDIHLVDAQQARRVLDRLVGYKLSPLLWRKVKKGLSAGRVQSVAVRMICD 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI F+P+EYWT++A SF A L H Q K++ +I S + ++
Sbjct: 178 REEEIRNFEPEEYWTLDA------DFLCRGGSFAAKLLHKQGKKM---TISSREQMDEVL 228
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
Q++ +A F V + + ++ P+ TS+LQQ+A KLNF+ TM LAQ+LYEG+ L
Sbjct: 229 QELRAAAFTVGEVKTKEKRKQPAPPFTTSSLQQEAYRKLNFTPKKTMMLAQQLYEGLDLG 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLI+YMRTD + I+D A +E + I E YG + PEE PRK+ K + QEAHEA
Sbjct: 289 KAGTVGLISYMRTDSVRIADTAQEEAKGFIIETYGETYYPEE-PRKFASKGRT-QEAHEA 346
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R P + G L + KLY LIW R +A QM A I VD+ D + R+
Sbjct: 347 IRPTSALRTPESVKGFLGREQFKLYRLIWDRFVASQMSAAVYDTITVDVLAGD--YLLRA 404
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S V+F G+ YE+ + +NEEN + L G L L +++ KQH T
Sbjct: 405 NASAVKFPGYLTVYEESTDEPEKL-DNEEN------CLKGDLAIGQKLQLRQLQEKQHFT 457
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
+PPARY+E +LV+K+EE GIGRPSTYA T++ +Q R YV + + L P G +V L
Sbjct: 458 EPPARYTEATLVRKMEEEGIGRPSTYAPTIETIQTRGYVAKEDKKLVPTELGEIVINLLK 517
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F ++ D FTA+ME +LD++ G ++WK ++ +++ F ++ + + E+ +
Sbjct: 518 EHFPDIVDQEFTANMEEKLDDIEDGKSDWKKIVGEFYGPF--------AVTLDKAEQKIG 569
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
K + + D C +CG ++ K+ RFG F+ C P C
Sbjct: 570 KIKVEDEVS-----DEVCELCGR-NMVIKMGRFGK--FLACPGFPDC 608
>gi|386758335|ref|YP_006231551.1| DNA topoisomerase I [Bacillus sp. JS]
gi|384931617|gb|AFI28295.1| DNA topoisomerase I [Bacillus sp. JS]
Length = 691
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 268/677 (39%), Positives = 373/677 (55%), Gaps = 58/677 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L L N + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLD----LDLN-SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++FKP+EYWT++ K + +TF F K +L + S + K+I +
Sbjct: 180 KEINDFKPEEYWTIDGTFLKGQ----ETFE-----ASFFGKNGKKLPLNSEADVKEILSQ 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LKGNKYTVEKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGRE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A E + I + YG G RK KK +NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISNTAVDEAAAFIDQTYGKEFLG--GKRKPAKKNENAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R P+ L +L D ++LY LIW R +A QM PA + + VD+ N + FR++
Sbjct: 349 PTSVLRKPSELKAVLGRDQMRLYKLIWERFVASQMAPAVLDTMSVDLTN--NGLTFRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y + + EE DR +L LK GD + ++E +QH TQP
Sbjct: 407 SKVKFSGFMKVYVEGKDDQM-----EEKDR-----MLPDLKEGDTVLSKDIEPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G++V + +
Sbjct: 457 PPRYTEARLVKTLEELGIGRPSTYAPTLDTIQRRGYVGLDNKRFVPTELGQIVLDLIMEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LD+V G TEW ++ ++++ F A+S + +VE E
Sbjct: 517 FPEIINVEFTAKMERDLDHVEEGNTEWVKIIDNFYTDFEKRVKKAES-EMKEVEIEPEYA 575
Query: 952 FGDSLFASLPNKDR----------------------------SCPVCGEGTLIFKVSRFG 983
D S P + CP CGEG ++ + S+
Sbjct: 576 GEDCELCSSPMVYKMGRYGKFLACSNFPDCRNTKPIVKQIGVKCPSCGEGNIVERKSK-K 634
Query: 984 AGYFIGCNQHPRCNYIA 1000
F GC+++P C +++
Sbjct: 635 KRVFYGCDRYPDCEFVS 651
>gi|416124350|ref|ZP_11595346.1| DNA topoisomerase I [Staphylococcus epidermidis FRI909]
gi|319401460|gb|EFV89670.1| DNA topoisomerase I [Staphylococcus epidermidis FRI909]
Length = 689
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 253/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKHAKKAKKIFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KDSFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW++E K+S F A H+++K + + + + I +
Sbjct: 179 ENEIRNFKPEEYWSIEGEFRYKKS------KFIAKFLHYKNK---PYKLNNKDDVQKITE 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+N F++ +++ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ALNGDQFEITNVNRKEKTRYPAHPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISTSAKSEAQQYITDKYGEQYVSQ---RKSSGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ D I FR++
Sbjct: 346 RPTSTMRTPDDMKAFLTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++END+ L L GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKENDKENK---LPQLDKGDKVTATKIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFIPTELGEIVYEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ D+++ F A+S + ++E E
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDMNWRKVIGDFYNSFKQDVERAES-EMEKIEIKDEP 572
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 573 AGED------------CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|421277554|ref|ZP_15728373.1| DNA topoisomerase I [Streptococcus mitis SPAR10]
gi|395874806|gb|EJG85888.1| DNA topoisomerase I [Streptococcus mitis SPAR10]
Length = 695
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 255/651 (39%), Positives = 370/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDVENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+I+ +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKINMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K++ + ++ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGMNGKKM---KLTTNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+NS +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 HMNSKDFTVDQVDKKERKRNTPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGK 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA---QEAH 707
G GLITYMRTD IS A E S I ER+GS ++ K+ KVKNA Q+AH
Sbjct: 301 GVQ-GLITYMRTDSTRISPVAQNEAASYINERFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPEKIAKYLDKDQLKLYTLIWNRFVASQMTGAIFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D + L ++ GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKNKM----------------LPDMEVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + S+ P GR+V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLASKRFEPTDLGRVVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + FTA+ME +LD+V G EW+ ++ +++ FS A++ ++EK+
Sbjct: 516 IVEYFPDIVNVKFTAEMEGKLDDVEVGKEEWQRVIDEFYKPFSKEVAKAEA----EMEKI 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
K C VCG ++ K+ RFG F C+ P C +
Sbjct: 572 QIKDEPAGF---------DCEVCG-SPMVIKIGRFGK--FYACSNFPDCRH 610
>gi|398307419|ref|ZP_10511005.1| DNA topoisomerase I [Bacillus vallismortis DV1-F-3]
Length = 691
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 266/677 (39%), Positives = 371/677 (54%), Gaps = 58/677 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L L + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLDLD--LDSD---CRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 ESFKHPRMINMDLVDAQQARRVLDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++FKP+EYWT+ K + SF A F K +L + S + KDI +
Sbjct: 180 KEINDFKPEEYWTIGGTFLKGKE------SFEAG---FFGKNGKKLPLNSEADVKDILSQ 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LKGNKYTVEKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGRE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A E + I + YG G RK KK +NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISNTAVDEAAAFIDQAYGKEFLG--GKRKPAKKNENAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R P+ L +L D ++LY LIW R +A QM PA + + VD+GN + FR++
Sbjct: 349 PTSVLRKPSELKAVLGRDQMRLYKLIWERFVASQMAPAVLDTMSVDLGN--NGLTFRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y E +++ E +L LK GD + ++E +QH TQP
Sbjct: 407 SKVKFSGFMKVY----------VEGKDDQTEEKNRMLPDLKEGDTVLSKDIEPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK +EELGIGRPSTYA TL +Q R YV++ ++ P G++V + +
Sbjct: 457 PPRYTEARLVKTMEELGIGRPSTYAPTLDTIQRRGYVSLDNKRFVPTELGQIVLDSMMEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LD V G TEW ++ ++++ F A++ + +VE E
Sbjct: 517 FPEIINVEFTAKMEKDLDYVEEGDTEWVKIIDNFYADFEKRVKKAEA-EMKEVEIEPEYA 575
Query: 952 FGDSLFASLPNKDR----------------------------SCPVCGEGTLIFKVSRFG 983
D S P + CP CGEG ++ + S+
Sbjct: 576 GEDCELCSSPMVYKMGRYGKFLACSNFPDCRNTKPIVKQIGVKCPSCGEGNIVERKSK-K 634
Query: 984 AGYFIGCNQHPRCNYIA 1000
F GC+++P C +++
Sbjct: 635 KRIFYGCDRYPECEFVS 651
>gi|418607714|ref|ZP_13170937.1| DNA topoisomerase I [Staphylococcus epidermidis VCU057]
gi|374403831|gb|EHQ74826.1| DNA topoisomerase I [Staphylococcus epidermidis VCU057]
Length = 689
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 253/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKHAKKAKKIFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KDSFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW++E K+S F A H+++K + + + + I +
Sbjct: 179 ENEIRNFKPEEYWSIEGEFRYKKS------KFTAKFLHYKNK---PYKLNNKDDVQRITE 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+N F++ +++ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ALNGDQFEITNVNRKEKTRYPAHPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISTSAKSEAQQYINDKYGEQYVSQ---RKSSVK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ D I FR++
Sbjct: 346 RPTSTMRTPDDMKAFLTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++END+ L L GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKENDKENK---LPQLDKGDKVTATKIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFIPTELGEIVYEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ D+++ F A+S + ++E E
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDMNWRKVIGDFYNSFKQDVERAES-EMEKIEIKDEP 572
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 573 AGED------------CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|239636272|ref|ZP_04677274.1| DNA topoisomerase I [Staphylococcus warneri L37603]
gi|239597627|gb|EEQ80122.1| DNA topoisomerase I [Staphylococcus warneri L37603]
Length = 689
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 252/646 (39%), Positives = 364/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKKVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KDSFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALKLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKS------KFTAKFLHYKNK---PYKLNKKEDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDEFEITNVNKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMIAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD+A E ++ I ++YG+ + RK K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISDQAKSEAKNYIIDKYGNEYVSN---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + I +D+ D I FR++
Sbjct: 346 RPTSTLRTPEEMKPFLTRDQHRLYKLIWERFVASQMAPAILDTIALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++++D+ L L+ GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VETKDDKDSDKENK---LPKLEQGDKVTATQIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFMPTELGEIVYEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ D+++ F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDMNWRKVVGDFYNSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|223933022|ref|ZP_03625016.1| DNA topoisomerase I [Streptococcus suis 89/1591]
gi|223898339|gb|EEF64706.1| DNA topoisomerase I [Streptococcus suis 89/1591]
Length = 697
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 251/649 (38%), Positives = 366/649 (56%), Gaps = 57/649 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D++++ +
Sbjct: 16 NLVIVESPAKAKTIEKYLGKNYKVVASVGHIRDLKKSSMSIDFDNNYAPEYINIRGKGPL 75
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ S+K A+ + LASDPDREGEAI+WH+ +L DA +N RVVF+EIT+ ++
Sbjct: 76 INSLKKEAKNAKQVFLASDPDREGEAISWHLAHILGL-DANDKN----RVVFNEITKDAV 130
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A Q R I+ +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 131 KNAFQEPRAINLDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 190
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT++A K F A K+ I ++ + K+I
Sbjct: 191 ENEISNFKPEEYWTIDATFKKGSK------KFQASFYGIDGKK---TKIENNEQVKEILA 241
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+++ +F V + ++ R P PY TST+Q DAANK+NF TM +AQ+LYEGV L
Sbjct: 242 RLDGDDFLVEQVERKERKRNAPLPYTTSTMQMDAANKINFRTHKTMMVAQQLYEGVSLGT 301
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A + I ER+G+ ++ K+ KVKN AQ+AH
Sbjct: 302 GGTQGLITYMRTDSTRISPVAQAQAADFITERFGATYS------KHGNKVKNASGAQDAH 355
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+++ P ++ LD+D L+LY+LIW+R +A QM A + V +G IVF
Sbjct: 356 EAIRPSNVNLTPESIAKYLDKDQLRLYTLIWNRFVASQMAVAVFDTMSVRLGQ--NGIVF 413
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L ++ GD + +QH
Sbjct: 414 AANGSQVKFDGYMAVYNDADKN----------------KMLPDMEQGDTVVRASTNPEQH 457
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 458 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVKLAAKRFEPTELGEIVNKL 517
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ +F ++ + FTADME +LD+V G +W+ ++ ++ F + + + E+
Sbjct: 518 IVEFFPDIVNVKFTADMEQKLDDVEIGKEQWQKVIDGFYQPF--------KVELSKAEEQ 569
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+EK A C VCG ++ K+ RFG F C+ P C
Sbjct: 570 MEKIQIKDEPAGF-----DCDVCGH-EMVIKLGRFGK--FYACSNFPDC 610
>gi|386584135|ref|YP_006080538.1| DNA topoisomerase I [Streptococcus suis D9]
gi|353736281|gb|AER17290.1| DNA topoisomerase I [Streptococcus suis D9]
Length = 697
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 251/649 (38%), Positives = 366/649 (56%), Gaps = 57/649 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D++++ +
Sbjct: 16 NLVIVESPAKAKTIEKYLGKNYKVVASVGHIRDLKKSSMSIDFDNNYAPEYINIRGKGPL 75
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ S+K A+ + LASDPDREGEAI+WH+ +L DA +N RVVF+EIT+ ++
Sbjct: 76 INSLKKEAKNAKQVFLASDPDREGEAISWHLAHILGL-DANDKN----RVVFNEITKDAV 130
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A Q R I+ +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 131 KNAFQEPRAINLDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 190
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT++A K F A K+ I ++ + K+I
Sbjct: 191 ENEISNFKPEEYWTIDATFKKGSK------KFQASFYGIDGKK---TKIENNEQVKEILA 241
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+++ +F V + ++ R P PY TST+Q DAANK+NF TM +AQ+LYEGV L
Sbjct: 242 RLDGDDFLVEQVERKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGVSLGT 301
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A + I ER+G+ ++ K+ KVKN AQ+AH
Sbjct: 302 GGTQGLITYMRTDSTRISPVAQAQAADFITERFGATYS------KHGNKVKNASGAQDAH 355
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+++ P ++ LD+D L+LY+LIW+R +A QM A + V +G IVF
Sbjct: 356 EAIRPSNVNLTPESIAKYLDKDQLRLYTLIWNRFVASQMAVAVFDTMSVRLGQ--NGIVF 413
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L ++ GD + +QH
Sbjct: 414 AANGSQVKFDGYMAVYNDADKN----------------KMLPDMEQGDTVVRASTNPEQH 457
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 458 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVKLAAKRFEPTELGEIVNKL 517
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ +F ++ + FTADME +LD+V G +W+ ++ ++ F + + + E+
Sbjct: 518 IVEFFPDIVNVKFTADMEQKLDDVEIGKEQWQKVIDGFYQPF--------KVELSKAEEQ 569
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+EK A C VCG ++ K+ RFG F C+ P C
Sbjct: 570 MEKIQIKDEPAGF-----DCDVCGH-EMVIKLGRFGK--FYACSNFPDC 610
>gi|330832818|ref|YP_004401643.1| DNA topoisomerase I [Streptococcus suis ST3]
gi|329307041|gb|AEB81457.1| DNA topoisomerase I [Streptococcus suis ST3]
Length = 697
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 251/649 (38%), Positives = 366/649 (56%), Gaps = 57/649 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D++++ +
Sbjct: 16 NLVIVESPAKAKTIEKYLGKNYKVVASVGHIRDLKKSSMSIDFDNNYAPEYINIRGKGPL 75
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ S+K A+ + LASDPDREGEAI+WH+ +L DA +N RVVF+EIT+ ++
Sbjct: 76 INSLKKEAKNAKQVFLASDPDREGEAISWHLAHILGL-DANDKN----RVVFNEITKDAV 130
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A Q R I+ +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 131 KNAFQEPRAINLDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 190
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT++A K F A K+ I ++ + K+I
Sbjct: 191 ENEISNFKPEEYWTIDATFKKGSK------KFQASFYGIDGKK---TKIENNEQVKEILA 241
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+++ +F V + ++ R P PY TST+Q DAANK+NF TM +AQ+LYEGV L
Sbjct: 242 RLDGDDFLVEQVERKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGVSLGT 301
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A + I ER+G+ ++ K+ KVKN AQ+AH
Sbjct: 302 GGTQGLITYMRTDSTRISPVAQAQAADFITERFGATYS------KHGNKVKNASGAQDAH 355
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+++ P ++ LD+D L+LY+LIW+R +A QM A + V +G IVF
Sbjct: 356 EAIRPSNVNLTPESIAKYLDKDQLRLYTLIWNRFVASQMAVAVFDTMSVRLGQ--NGIVF 413
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L ++ GD + +QH
Sbjct: 414 AANGSQVKFDGYMAVYNDADKN----------------KMLPDMEQGDTVVRASTNPEQH 457
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 458 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVKLAAKRFEPTELGEIVNKL 517
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ +F ++ + FTADME +LD+V G +W+ ++ ++ F + + + E+
Sbjct: 518 IVEFFPDIVNVKFTADMEQKLDDVEIGKEQWQKVIDGFYQPF--------KVELSKAEEQ 569
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+EK A C VCG ++ K+ RFG F C+ P C
Sbjct: 570 MEKIQIKDEPAGF-----DCDVCGH-EMVIKLGRFGK--FYACSNFPDC 610
>gi|384159405|ref|YP_005541478.1| DNA topoisomerase I [Bacillus amyloliquefaciens TA208]
gi|384164160|ref|YP_005545539.1| DNA topoisomerase I [Bacillus amyloliquefaciens LL3]
gi|384168452|ref|YP_005549830.1| DNA topoisomerase I [Bacillus amyloliquefaciens XH7]
gi|328553493|gb|AEB23985.1| DNA topoisomerase I [Bacillus amyloliquefaciens TA208]
gi|328911715|gb|AEB63311.1| DNA topoisomerase I [Bacillus amyloliquefaciens LL3]
gi|341827731|gb|AEK88982.1| DNA topoisomerase I [Bacillus amyloliquefaciens XH7]
Length = 691
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 262/645 (40%), Positives = 366/645 (56%), Gaps = 44/645 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L + + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLDLDLS-----SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++FKP+EYWT+ K + +TF F K +L + S + K + +
Sbjct: 180 KEINDFKPEEYWTITGSFLKGK----ETFE-----AGFFGKNGKKLPLKSEEDVKAVLAE 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LKGNKYTVDKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGKE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A +E + I + YG + G RK KK +NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISNTAVEEASAFIDQAYGKEYLA--GKRKAAKKNENAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R PA L +L D L+LY LIW R +A QM PA + + VD+ N + FR++
Sbjct: 349 PTSVLRKPAELKAVLGRDQLRLYKLIWERFVASQMAPAVLDTMSVDLSN--NGLTFRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y + + EE DR +L LK GD + ++E +QH TQP
Sbjct: 407 SKVKFAGFMKVYVEGKDDQL-----EEKDR-----MLPDLKEGDTVLSKDIEPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G++V + +
Sbjct: 457 PPRYTEARLVKTLEELGIGRPSTYAPTLDTIQRRGYVALDNKRFVPTELGQIVLDLIMEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LD+V G TEW ++ +++ F A++ + +VE +E
Sbjct: 517 FPEIINVEFTAKMERDLDHVEDGETEWVQIIDSFYTDFEKRVKKAEA-EMKEVE--IEPE 573
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ D C +CG +++K+ R+G F+ C+ P C
Sbjct: 574 YADE----------DCELCG-SRMVYKMGRYGK--FMACSNFPDC 605
>gi|386588106|ref|YP_006084507.1| DNA topoisomerase I [Streptococcus suis A7]
gi|354985267|gb|AER44165.1| DNA topoisomerase I [Streptococcus suis A7]
Length = 697
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 250/649 (38%), Positives = 364/649 (56%), Gaps = 57/649 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D+D++ +
Sbjct: 16 NLVIVESPAKAKTIEKYLGKNYKVVASVGHIRDLKKSSMSIDFDNDYAPEYINIRGKGPL 75
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ S+K A+ + LASDPDREGEAI+WH+ +L L E RVVF+EIT+ ++
Sbjct: 76 INSLKKEAKNAKQVFLASDPDREGEAISWHLAHIL----GLDEK-DKNRVVFNEITKDAV 130
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R I+ +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 131 KNAFKEPRAINHDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 190
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT++A K F A K+ I ++ + K+I
Sbjct: 191 ENEISNFKPEEYWTIDATFKKGSK------KFQASFYGIDGKKT---KIENNEQVKEILA 241
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+++ +F V + ++ R P PY TST+Q DAANK+NF TM +AQ+LYEGV L
Sbjct: 242 RLDEDDFLVEQVERKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGVSLGT 301
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA---QEAH 707
G GLITYMRTD IS A + I ER+G ++ K+ KVKNA Q+AH
Sbjct: 302 GGTQGLITYMRTDSTRISPVAQAQAAEFITERFGEKYS------KHGSKVKNATGAQDAH 355
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP++++ P ++ LD+D L+LY+LIW+R +A QM A + V +G IVF
Sbjct: 356 EAIRPSNVQLTPESIAKYLDKDQLRLYTLIWNRFVASQMAAAVFDTMSVRLGQ--NGIVF 413
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D + L ++ GD + +QH
Sbjct: 414 AANGSQVKFDGYMAVYNDADKNKM----------------LPDMEQGDTVVRASTNPEQH 457
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 458 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVKLAAKRFEPTELGEIVNKL 517
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ +F ++ + FTADME +LD+V G +W+ ++ ++ F + + + E+
Sbjct: 518 IVEFFPDIVNVKFTADMEQKLDDVEIGKEQWQKVIDGFYQPF--------KVELSKAEEQ 569
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+EK A C VCG ++ K+ RFG F C+ P C
Sbjct: 570 MEKIQIKDEPAGF-----DCDVCGH-EMVIKLGRFGK--FYACSNFPDC 610
>gi|319892265|ref|YP_004149140.1| DNA topoisomerase I [Staphylococcus pseudintermedius HKU10-03]
gi|386319467|ref|YP_006015630.1| DNA topoisomerase I [Staphylococcus pseudintermedius ED99]
gi|317161961|gb|ADV05504.1| DNA topoisomerase I [Staphylococcus pseudintermedius HKU10-03]
gi|323464638|gb|ADX76791.1| DNA topoisomerase I [Staphylococcus pseudintermedius ED99]
Length = 689
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 255/647 (39%), Positives = 354/647 (54%), Gaps = 48/647 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V + D+ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDVEHDYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ +L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKRHAKKAKKVFLASDPDREGEAIAWHLANILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKHPRGIEMDLVDAQQARRVLDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW++E +S F A H++ K + + + I +
Sbjct: 179 ENEIRNFKPEEYWSIEGEFRYGKS------KFNAKFLHYKDK---PFKLATKDDVTVITK 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F V +K+ RK P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGNQFTVSNVTKKEKTRKPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA-QEAHEA 709
GLITYMRTD IS +A E + I YGS + K KK K Q+AHEA
Sbjct: 290 KGTIGLITYMRTDSTRISKDAQNEAKQFIESEYGSAYLS-----KVTKKGKQGDQDAHEA 344
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R PA + L D +LY LIW R +A QM PA + + VD+ D + FR+
Sbjct: 345 IRPTSTLRTPAEMKDYLTRDQYRLYKLIWERFVASQMAPAILDTVAVDLTQND--VKFRA 402
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ ++F GF Y + D + KEN L L+ G+ + +++ QH T
Sbjct: 403 NGQTIKFKGFMTLYVETDDDKGKEKENR----------LPKLEVGNEVLATKIDPAQHFT 452
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV +S+ P G +V +
Sbjct: 453 QPPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKNESKRFVPTELGEIVHEQVK 512
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF E+ D FT +MET LD ++ G WK ++ D+++ F + + EK +E
Sbjct: 513 EYFPEIIDVDFTVNMETLLDKIADGDVAWKKVVGDFFNSFKQ--------DVERAEKEME 564
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
K A C VCG ++ K+ R+G F+ C+ P C
Sbjct: 565 KVEIKDEPAG-----EDCEVCG-NPMVIKMGRYGK--FMACSNFPDC 603
>gi|392957511|ref|ZP_10323034.1| DNA topoisomerase I [Bacillus macauensis ZFHKF-1]
gi|391876474|gb|EIT85071.1| DNA topoisomerase I [Bacillus macauensis ZFHKF-1]
Length = 691
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 263/647 (40%), Positives = 357/647 (55%), Gaps = 47/647 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y V S GHVRDL V +D+F + L
Sbjct: 5 LVIVESPAKAKTIEKYLGKKYVVKASMGHVRDLPRSQMGVEIEDNFQPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV-ARVVFHEITEASI 470
K +K A A+ + LASDPDREGEAIAWH+ +L ++T RVVF+EIT+ +I
Sbjct: 65 KELKTAAKKAKKIFLASDPDREGEAIAWHLAH------SLDIDLTSDCRVVFNEITKNAI 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R+I+ +LV A ARR LD L+G+ ISPLLW+K+ SAGRVQ+ AL LI +R
Sbjct: 119 KDSFKRPRKINMDLVDAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQTVALRLIVER 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI +F P+EYW ++A T+ A HF + + + + KD+ Q
Sbjct: 179 EKEIKQFVPEEYWKIKAAF---------TYGKEAFEAHFYGVDGKKRELSNEQDVKDVLQ 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
K+ F + K+ R P+ITS+LQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 KLKGTAFTIQSVQKKERKRNPAPPFITSSLQQEAARKLNFRAKKTMMLAQQLYEGIDLGK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A +E +S I YG PR K+ KNAQ+AHEAI
Sbjct: 290 EGTVGLITYMRTDSTRISDVAKEEAKSFITAEYGEAFV-NTTPRPEKKQGKNAQDAHEAI 348
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ + P L L D L+LY LIW R +A QM PA + + VD+ N E ++FR++
Sbjct: 349 RPSSASKHPKELKEFLSRDQLRLYRLIWERFIASQMAPAVLDTMTVDLNN--EGVLFRAN 406
Query: 771 CSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S+V+F GF Y E D G ++ DR +L L+ G E+E QH T
Sbjct: 407 GSKVKFPGFMKVYIEGNDDG------KKDEDR-----LLPDLEEGKTAVYEEMEPTQHFT 455
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RYSE LVK +EELGIGRPSTYA TL +Q R YV + + P G +V
Sbjct: 456 QPPPRYSEARLVKSMEELGIGRPSTYAPTLDTIQKRGYVMLDDKKFQPTELGEVVLELTL 515
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+FSEV + FTA MET+LD + G +W ++ +++ F A+ E+M E
Sbjct: 516 EFFSEVFNVEFTAQMETDLDEIEDGDKQWNDVIDEFYQSFEKQLVVAE-------EEMKE 568
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D P ++ C +CG +++K+ R+G F+ C+ P C
Sbjct: 569 VEIKDE-----PAGEQ-CELCGH-EMVYKMGRYGK--FMACSNFPEC 606
>gi|307706730|ref|ZP_07643535.1| DNA topoisomerase I [Streptococcus mitis SK321]
gi|307617815|gb|EFN96977.1| DNA topoisomerase I [Streptococcus mitis SK321]
Length = 695
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 255/651 (39%), Positives = 370/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN T RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDENDT-NRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++AV K T F A K+ L + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTIDAVFKK------GTKQFQASFYGVDGKK---LKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E+ + I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEVANFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ I P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSIFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|154686028|ref|YP_001421189.1| DNA topoisomerase I [Bacillus amyloliquefaciens FZB42]
gi|394993952|ref|ZP_10386690.1| DNA topoisomerase I [Bacillus sp. 916]
gi|429505165|ref|YP_007186349.1| DNA topoisomerase I [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|452855558|ref|YP_007497241.1| DNA topoisomerase I [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|154351879|gb|ABS73958.1| TopA [Bacillus amyloliquefaciens FZB42]
gi|393805197|gb|EJD66578.1| DNA topoisomerase I [Bacillus sp. 916]
gi|429486755|gb|AFZ90679.1| DNA topoisomerase I [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|452079818|emb|CCP21576.1| DNA topoisomerase I [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 691
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 263/645 (40%), Positives = 366/645 (56%), Gaps = 44/645 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L + + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLDLDLS-----SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++FKP+EYWT+ K + +TF F K +L + S + K I +
Sbjct: 180 KEINDFKPEEYWTITGSFLKGK----ETFE-----AGFFGKNGKKLPLKSEEDVKAILAQ 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LKGNKYTVDKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGKE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A +E + I + YG + G RK KK +NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISNTAVEEASAFIDQAYGKEYLA--GKRKPAKKNENAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R PA L +L D L+LY LIW R +A QM PA + + VD+ N + FR++
Sbjct: 349 PTSVLRKPADLKAVLGRDQLRLYKLIWERFVASQMAPAVLDTMSVDLSN--NGLTFRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y + + EE DR +L LK GD + ++E +QH TQP
Sbjct: 407 SKVKFAGFMKVYVEGKDDQL-----EEKDR-----MLPDLKEGDTVLSKDIEPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G++V + +
Sbjct: 457 PPRYTEARLVKTLEELGIGRPSTYAPTLDTIQRRGYVGLDNKRFVPTELGQIVLDLIMEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LD+V G TEW ++ +++ F A++ + +VE +E
Sbjct: 517 FPEIINVEFTAKMERDLDHVEDGQTEWVQIIDSFYTDFEKRVKKAEA-EMKEVE--IEPE 573
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ D C +CG +++K+ R+G F+ C+ P C
Sbjct: 574 YADE----------DCELCG-SRMVYKMGRYGK--FMACSNFPDC 605
>gi|308173574|ref|YP_003920279.1| DNA topoisomerase I [Bacillus amyloliquefaciens DSM 7]
gi|307606438|emb|CBI42809.1| DNA topoisomerase I [Bacillus amyloliquefaciens DSM 7]
Length = 691
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 262/645 (40%), Positives = 366/645 (56%), Gaps = 44/645 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L + + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLDLDLS-----SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++FKP+EYWT+ K + +TF F K +L + S + K + +
Sbjct: 180 KEINDFKPEEYWTITGSFLKGK----ETFE-----AGFFGKNGKKLPLKSEEDVKAVLAE 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LKGNKYTVDKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGKE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A +E + I + YG + G RK KK +NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISNTAVEEASAFIDQAYGKEYLA--GKRKAPKKNENAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R PA L +L D L+LY LIW R +A QM PA + + VD+ N + FR++
Sbjct: 349 PTSVLRKPAELKAVLGRDQLRLYKLIWERFVASQMAPAVLDTMSVDLSN--NGLTFRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y + + EE DR +L LK GD + ++E +QH TQP
Sbjct: 407 SKVKFAGFMKVYVEGKDDQL-----EEKDR-----MLPDLKEGDTVLSKDIEPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G++V + +
Sbjct: 457 PPRYTEARLVKTLEELGIGRPSTYAPTLDTIQRRGYVALDNKRFVPTELGQIVLDLIMEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LD+V G TEW ++ +++ F A++ + +VE +E
Sbjct: 517 FPEIINVEFTAKMERDLDHVEDGETEWVQIIDSFYTDFEKRVKKAEA-EMKEVE--IEPE 573
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ D C +CG +++K+ R+G F+ C+ P C
Sbjct: 574 YADE----------DCELCG-SRMVYKMGRYGK--FMACSNFPDC 605
>gi|443632718|ref|ZP_21116897.1| DNA topoisomerase I [Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443347541|gb|ELS61599.1| DNA topoisomerase I [Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 691
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 265/677 (39%), Positives = 372/677 (54%), Gaps = 58/677 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L L N + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLD----LDLN-SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++FKP+EYWT++ K + +TF F K +L + S + KDI +
Sbjct: 180 KEINDFKPEEYWTIDGTFLKGQ----ETFE-----ASFFGKNGKKLPLKSEADVKDILSQ 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LKGNKYTVEKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGRE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A E + I + YG G RK KK +NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISNTAVDEAAAFIDQAYGKEFLG--GKRKPAKKNENAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R P+ L +L D ++LY LIW R +A QM PA + + VD+ N + FR++
Sbjct: 349 PTSVLRKPSELKAVLGRDQMRLYKLIWERFVASQMAPAVLDTMSVDLTN--NGLTFRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y E +++ E +L L+ GD + ++E +QH TQP
Sbjct: 407 SKVKFSGFMKVY----------VEGKDDQMEEKDRMLPDLQEGDTVLKKDIEPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G++V + +
Sbjct: 457 PPRYTEARLVKTLEELGIGRPSTYAPTLDTIQRRGYVGLDNKRFVPTELGQIVLDLIMEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LD+V G TEW ++ ++++ F A++ + +VE E
Sbjct: 517 FPEIINVEFTAKMEKDLDHVEEGNTEWVKIIDNFYTDFEKRVKKAEA-EMKEVEIEPEYA 575
Query: 952 FGDSLFASLPNKDR----------------------------SCPVCGEGTLIFKVSRFG 983
D S P + CP CGEG ++ + S+
Sbjct: 576 GEDCELCSSPMVYKMGRYGKFLACSNFPDCRNTKPIVKQIGVKCPSCGEGNIVERKSK-K 634
Query: 984 AGYFIGCNQHPRCNYIA 1000
F GC+++P C +++
Sbjct: 635 KRVFYGCDRYPDCEFVS 651
>gi|430750325|ref|YP_007213233.1| DNA topoisomerase I [Thermobacillus composti KWC4]
gi|430734290|gb|AGA58235.1| DNA topoisomerase I, bacterial [Thermobacillus composti KWC4]
Length = 697
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 265/681 (38%), Positives = 371/681 (54%), Gaps = 63/681 (9%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES KAK I YLG Y V S GH+RDL V ++ F + +
Sbjct: 4 SLVIVESPAKAKTISKYLGSKYIVKASMGHIRDLPKSQTGVEIENGFQPKYITIRGKGSV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A + + LA+DPDREGEAIAWH+ L+ RVVF+EIT+ ++
Sbjct: 64 LKELKDASKKVKKVYLAADPDREGEAIAWHLAHYLELDQG-----EACRVVFNEITKQAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A ++ R I+ +LV A ARR LD L+G+ ISPLLW+K+ SAGRVQS A+ LI DR
Sbjct: 119 KDAFKSPRPINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKLIIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F P+EYWT+ A L + D F A +++ + + E + +
Sbjct: 179 ENEINAFVPEEYWTITARLVQ------DNLPFEAKFHALDNEKKE---LPNEQEVQQVLA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I F V + +R +R P+ITSTLQQ+AA KL F A TM +AQ+LYEGV +
Sbjct: 230 AIEGQPFVVSEVKERERLRNPAPPFITSTLQQEAARKLGFRAAKTMSIAQQLYEGVDIGR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
+ GLITYMRTD IS A +E ++ I E++G+ +APE+ R Y K+ NAQ+AHEAI
Sbjct: 290 EGSVGLITYMRTDSTRISPVAQEEAKAYIVEKFGAEYAPEQF-RVYAKRNSNAQDAHEAI 348
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI--GNADESIVFR 768
RPT I R P + L +D +LY L+W R A QM A + + VDI G A FR
Sbjct: 349 RPTSIHRDPETVKPYLTKDQYRLYKLVWERFTASQMSSAVLDTMTVDIKAGRA----TFR 404
Query: 769 SSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+++F GF Y E D G +EEN +L L+ G + +E KQH
Sbjct: 405 ATGSKIKFPGFMKVYVEGSDDGP----SDEEN-------LLPPLREGMTVERTAIEPKQH 453
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T PP RY+E LV+ LEELGIGRPSTYA TL+ + R YV ++ + P G +V+
Sbjct: 454 FTSPPPRYTEARLVRALEELGIGRPSTYAPTLETIHKRGYVAIEDKKFVPTELGLLVNQL 513
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ +F E+ + FTA ME +LD+V G +W +L +++ FS A+ + +VE
Sbjct: 514 MEEFFPEILNVEFTAHMEDDLDHVEEGKKDWVEVLNEFYEPFSKRLKIAED-EMREVELQ 572
Query: 948 LEKT-----------------FGDSLFAS-----------LPNKDRSCPVCGEGTLIFKV 979
E + FG L S L + SCP CGEG +I +
Sbjct: 573 EEVSDETCDKCGRPMVYKMGRFGKFLACSGFPECRNTKPILKDIGVSCPKCGEGRIIERR 632
Query: 980 SRFGAGYFIGCNQHPRCNYIA 1000
S+ G F GC+++P C+Y++
Sbjct: 633 SKKGR-IFYGCDKYPGCDYVS 652
>gi|428220266|ref|YP_007104436.1| DNA topoisomerase I [Synechococcus sp. PCC 7502]
gi|427993606|gb|AFY72301.1| DNA topoisomerase I, bacterial [Synechococcus sp. PCC 7502]
Length = 815
Score = 434 bits (1117), Expect = e-118, Method: Compositional matrix adjust.
Identities = 301/844 (35%), Positives = 421/844 (49%), Gaps = 104/844 (12%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGS--------------VRPDDD 396
++V+VES TKA+ I+ +L Y V S GHVRDL + V + D
Sbjct: 3 TLVIVESPTKARTIRNFLPSGYRVEASMGHVRDLPQSASDIPASVKSEAWSKLGVNVEAD 62
Query: 397 FSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENIT 456
F ++ +P + +K AL A LILA+D DREGE+I+WH++E+L+ + +
Sbjct: 63 FEPLYIIPKDKKKIVSELKAALKDATELILATDEDREGESISWHLLEILRPK------VP 116
Query: 457 VARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSA 516
+ R+VFHEIT +IK ALQ R++D LV A RR LD L+G+ +SPLLW+K+ SA
Sbjct: 117 IKRMVFHEITSEAIKAALQNCRDVDEKLVHAQETRRILDRLVGYTLSPLLWKKIAWGLSA 176
Query: 517 GRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLN- 575
GRVQS A+ L+ +RE E FK YW ++A L + FPA L ++L
Sbjct: 177 GRVQSVAVRLLVNREQERRAFKSGSYWDLKATLFAPDHE------FPAQLVSLGGRQLAT 230
Query: 576 ----QLSIGSHTEAKDIE-----------QKINSANFQVIKNSKRSMVRKNPTPYITSTL 620
S G + K++ +++N + V ++ RK P+ TSTL
Sbjct: 231 GKDFDESTGKIAKGKNVLLLDEPSAIALLERLNGKVWTVTHQEEKPTTRKPSPPFTTSTL 290
Query: 621 QQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIF 680
QQ+A KL SA TM+ AQ LYE G ITYMRTD +H+SD+A R+ +
Sbjct: 291 QQEANRKLRLSARDTMRTAQALYE---------QGFITYMRTDSVHLSDQAISAARNCVS 341
Query: 681 ERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSR 740
+ YG ++ + PR+Y K K AQEAHEAIRP +GL + LY LIW R
Sbjct: 342 QMYGENYLSPK-PRQYATKSKGAQEAHEAIRPAGASFRTPQQTGLSGRE-FSLYDLIWKR 399
Query: 741 TMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAY----EDVDAGAIRYKEN 796
T+A QM A I V IG D +FRSS R++F GF AY +D DA AI +E
Sbjct: 400 TIASQMADARQTMISVQIGVEDA--IFRSSGKRIDFAGFFRAYVEGSDDPDA-AIEGQE- 455
Query: 797 EENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYA 856
+L L GD +++ H TQPPARY+E SLVK LE GIGRPSTYA
Sbjct: 456 ---------IVLPKLIIGDHPVCQQLQPVGHETQPPARYTEASLVKTLESEGIGRPSTYA 506
Query: 857 STLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLT 916
S + + DR Y + L P F V++ L +F + D SFT+ ME LD++S G
Sbjct: 507 SIIGTICDRGYAQLTHNTLIPTFTAFAVTSLLEEHFPNLVDPSFTSKMEQTLDDISTGSV 566
Query: 917 EWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLI 976
EW L ++S + LE D A P+ R+ + G +
Sbjct: 567 EWLPYLRKFYSGKAG----------------LETLVKDREQAIDPDTARTITLVGLENIK 610
Query: 977 FKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNV------DEPKLIGHHPA 1030
K+ +F A +I N+ + ++ ++ D D L + + P IG HP
Sbjct: 611 VKIGKFWA--YIQVNEGEK--QVSASIPQDLTPADLLPEKIEIILKQKLEGPDQIGIHPE 666
Query: 1031 SKEKVLLKSGPYGFYVQLGEDRTGY-LPKRASVSHIKDVDSITLEDALELLRYPVNLGNH 1089
+ E + L G YG YVQLG+ PKRAS+ + +TL A++LL+ P LG H
Sbjct: 667 TGEPIFLLMGQYGAYVQLGQATDAVPKPKRASIPKGVAPEQVTLAMAVDLLKMPRELGVH 726
Query: 1090 PKDGQPIMLRLARAGFSVRHRRTIA-------SVPKNMKPNDVTLEKALEFLSGKDVRRC 1142
P+ G+ I L R G V H++ A S+ + P VTLE+ALE L+ R
Sbjct: 727 PETGKKIEANLGRFGPYVVHKKGGAEGKDDFRSLKGDDNPYTVTLERALELLAQPKTLRA 786
Query: 1143 GRPK 1146
G K
Sbjct: 787 GAAK 790
>gi|387898193|ref|YP_006328489.1| DNA topoisomerase I [Bacillus amyloliquefaciens Y2]
gi|387172303|gb|AFJ61764.1| DNA topoisomerase I [Bacillus amyloliquefaciens Y2]
Length = 693
Score = 434 bits (1117), Expect = e-118, Method: Compositional matrix adjust.
Identities = 262/645 (40%), Positives = 366/645 (56%), Gaps = 44/645 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 7 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 66
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L + + RVVF+EIT+ +IK
Sbjct: 67 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLDLDLS-----SDCRVVFNEITKDAIK 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 122 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++FKP+EYWT+ K + +TF F K +L + S + K + +
Sbjct: 182 KEINDFKPEEYWTITGSFLKGK----ETFE-----AGFFGKSGKKLPLKSEEDVKAVLAQ 232
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 233 LKGNKYTVDKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGKE 292
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A +E + I + YG + G RK KK +NAQ+AHEAIR
Sbjct: 293 GTVGLITYMRTDSTRISNTAVEEASAFIDQAYGKEYLA--GKRKPAKKNENAQDAHEAIR 350
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R PA L +L D L+LY LIW R +A QM PA + + VD+ N + FR++
Sbjct: 351 PTSVLRKPADLKAVLGRDQLRLYKLIWERFVASQMAPAVLDTMSVDLSN--NGLTFRANG 408
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y + + EE DR +L LK GD + ++E +QH TQP
Sbjct: 409 SKVKFAGFMKVYVEGKDDQL-----EEKDR-----MLPDLKEGDTVLSKDIEPEQHFTQP 458
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G++V + +
Sbjct: 459 PPRYTEARLVKTLEELGIGRPSTYAPTLDTIQRRGYVGLDNKRFVPTELGQIVLDLIMEF 518
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LD+V G TEW ++ +++ F A++ + +VE +E
Sbjct: 519 FPEIINVEFTAKMERDLDHVEDGQTEWVQIIDSFYTDFEKRVKKAEA-EMKEVE--IEPE 575
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ D C +CG +++K+ R+G F+ C+ P C
Sbjct: 576 YADE----------DCELCG-SRMVYKMGRYGK--FMACSNFPDC 607
>gi|70726665|ref|YP_253579.1| DNA topoisomerase I [Staphylococcus haemolyticus JCSC1435]
gi|123660046|sp|Q4L5V2.1|TOP1_STAHJ RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|68447389|dbj|BAE04973.1| DNA topoisomerase I [Staphylococcus haemolyticus JCSC1435]
Length = 689
Score = 434 bits (1117), Expect = e-118, Method: Compositional matrix adjust.
Identities = 247/646 (38%), Positives = 361/646 (55%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDVEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ D+ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKYAKKAKNVFLASDPDREGEAIAWHLSKILELDDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW++E K+S F A H+++K + + + + +
Sbjct: 179 ENEIRNFKPEEYWSIEGEFRYKKS------KFTAKFLHYKNK---PFKLKTKKDVEKVTA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ELDGDKFEITNVNKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A E + I ++YG + + K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISQTAKDEAKQYIEDKYGKDYLS----NRTAKGKQGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ +I FR++
Sbjct: 346 RPTSTLRTPYEMKAYLTRDQHRLYKLIWERFVASQMAPAILDTVALDV--TQNNIKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K++++N++ L +L GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKDNEKENK---LPNLSKGDEVTATQIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVYEQVKD 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ +++ F L + + E+ +EK
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDIGWRKVIDNFYGSF--------KLDVERAEEEMEK 565
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
A C VCG ++ K+ R+G F+ C+ P C
Sbjct: 566 VEIKDEPAG-----EDCEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|429759488|ref|ZP_19291986.1| DNA topoisomerase I [Veillonella atypica KON]
gi|429179449|gb|EKY20696.1| DNA topoisomerase I [Veillonella atypica KON]
Length = 775
Score = 434 bits (1117), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/683 (37%), Positives = 373/683 (54%), Gaps = 61/683 (8%)
Query: 344 LYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEV 403
+Y P GK +V+VES K+K I+ +LG Y V S GH+RDL + D DF+ +
Sbjct: 63 VYNPDGKILVIVESPAKSKTIEKFLGPNYIVKASMGHLRDLPKSQMGIDIDHDFTPRYSN 122
Query: 404 PSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFH 463
A + + + ++LA+DPDREGEAI+WH+ +L + + R+ F+
Sbjct: 123 LVARKKVIDDLVAHADESSAVLLATDPDREGEAISWHLAYILNV-----DTTSNCRITFN 177
Query: 464 EITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAA 523
EIT+ ++ AL+ R +D N+V A ARR LD ++G+ +SPLLW+K+ SAGRVQS A
Sbjct: 178 EITKTAVAEALEHPRTVDMNMVDAQQARRVLDRIVGYKLSPLLWKKVCKGLSAGRVQSVA 237
Query: 524 LSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHT 583
+ LIC+RE EI F PQEYW++E K + F A LTH + +L+ I T
Sbjct: 238 VRLICEREREIQAFVPQEYWSIEGQFKTKTNEE-----FTAELTHVKGDKLD---ITCET 289
Query: 584 EAKDIEQKI--NSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQK 641
+A I++ I ++A +K SKRS RK P+ TSTLQQD KLNF A TM +AQ
Sbjct: 290 DAVAIQKAIADHTATVTSVKKSKRS--RKPAPPFTTSTLQQDGVRKLNFGAKRTMMIAQH 347
Query: 642 LYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVK 701
LYEG+++ GLITYMRTD IS + ++ R I YG + P + P Y KK +
Sbjct: 348 LYEGLEIGSYGHVGLITYMRTDSTRISKDMQEQARDYIKRTYGDEYCPAK-PNVYGKK-E 405
Query: 702 NAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNA 761
+AQ+AHEAIRPT + P M+ + D LKLY+LIW+R MA QM P +++ +
Sbjct: 406 SAQDAHEAIRPTSLELTPKMVEPFVSRDELKLYTLIWNRFMASQMAPQQNESTTIEL-DI 464
Query: 762 DESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGE 821
D++ F+++ SRV F GF YED ++ E L +LK D +
Sbjct: 465 DDTYTFKATGSRVLFPGFSTVYED--------------NKKEETPQLPALKKSDVVETVL 510
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRG 881
++ +QH TQPPARYSE SL+K LEELGIGRPSTYA L + RNYV ++ P G
Sbjct: 511 IDPEQHFTQPPARYSEASLIKTLEELGIGRPSTYAPILDTIVSRNYVETNNKQFIPTELG 570
Query: 882 RMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI 941
+V FL YF ++ + FTA++E ELD ++ G + +L ++++ F A +
Sbjct: 571 FVVVDFLVAYFEKIINTGFTAELEEELDAIANGKDTYVKVLTNFYNIFKQELDDASDVDK 630
Query: 942 HQVEKM------------LEKTFGD-------SLFASLPNKDR-------SCPVCGEGTL 975
Q+ M + FG S F N +CP CGEG +
Sbjct: 631 IQIASMESDETCELCGHPMVYKFGRYGKFLACSNFPECKNTKPITVGTGVACPKCGEGEI 690
Query: 976 IFKVSRFGAGYFIGCNQHPRCNY 998
+ + S+ G F GCN++P+C++
Sbjct: 691 VERKSKRGR-IFYGCNRYPQCDF 712
>gi|420263143|ref|ZP_14765782.1| DNA topoisomerase TopA [Enterococcus sp. C1]
gi|394769777|gb|EJF49611.1| DNA topoisomerase TopA [Enterococcus sp. C1]
Length = 692
Score = 434 bits (1117), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/648 (39%), Positives = 363/648 (56%), Gaps = 46/648 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK I+ YLG Y+V+ S GH+RDL + ++D+ +
Sbjct: 4 KYLVIVESPAKAKTIEKYLGRNYKVVASVGHIRDLPKSKMGIDVENDYEPHYISIRGKGD 63
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+KS++ A AE + LASDPDREGEAIAWH+ +L D +N RVVF+EIT+ +
Sbjct: 64 VIKSLRSAAKKAEKVYLASDPDREGEAIAWHLAFLLGL-DLKDKN----RVVFNEITKDA 118
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A + R ID +LV A ARR LD L+G+++SP+LWRK+ SAGRVQS AL +I D
Sbjct: 119 VKAAFKEPRTIDVDLVDAQQARRILDRLVGYSLSPILWRKVKKGLSAGRVQSVALKIIID 178
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI EF P+EYW+++ K F L + K N SI K+I
Sbjct: 179 REKEIREFVPEEYWSIDGNFKKATKKFKANF---WGLDGKKKKLPNAESI------KEIT 229
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+++S FQV K K+ R P+ TS+LQQ+AA KLNF TM +AQ+LYEG+ L
Sbjct: 230 DRLSSKEFQVTKVEKKERKRNPAAPFTTSSLQQEAARKLNFRTRKTMMVAQQLYEGIALG 289
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E I YGS + G ++ + AQ+AHEA
Sbjct: 290 KQGTVGLITYMRTDSTRIADTAKGEAAEFIESTYGSEFSAHGGKKR--ANAQGAQDAHEA 347
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
+RPT + R P + LD+D LKLY LIWSR +A QM PA + ++V + ++F +
Sbjct: 348 VRPTSVMRTPEAMEKFLDKDQLKLYRLIWSRFVASQMTPAILDTMKVTLDQ--NGVIFIA 405
Query: 770 SCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ S+++F GF Y E D G KE++EN IL L GD + +E KQH
Sbjct: 406 NGSKIKFKGFMQVYVEGRDDG----KEDKEN-------ILPELVEGDVVQSVSIEPKQHF 454
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPPARYSE +L+K LEE G+GRPSTYA TL+ +Q R YV + + P G +V++ +
Sbjct: 455 TQPPARYSEATLIKTLEENGVGRPSTYAPTLETIQRRYYVKLTQKRFEPTELGEIVNSLI 514
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F ++ D FTA+ME LD++ AG EW ++ ++ F T A+ I +++
Sbjct: 515 EEFFPQIVDMHFTAEMENSLDSIEAGKEEWVKVVDQFYRPFEKELTTAEE-SIEKIQIKD 573
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E D C +CG ++ K+ R+G F C+ P C
Sbjct: 574 EPAGFD------------CDLCGH-PMVIKLGRYGK--FYACSNFPDC 606
>gi|335040234|ref|ZP_08533367.1| DNA topoisomerase I [Caldalkalibacillus thermarum TA2.A1]
gi|334179902|gb|EGL82534.1| DNA topoisomerase I [Caldalkalibacillus thermarum TA2.A1]
Length = 690
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 261/649 (40%), Positives = 358/649 (55%), Gaps = 48/649 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
+++V+VES KAK I YLG Y V S GHVRDL V D+ FS +
Sbjct: 3 EALVIVESPAKAKTIGKYLGKKYLVKASMGHVRDLPKSQMGVDIDNGFSPKYITIRGKGK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
LK ++ A +++ LA+DPDREGEAIAWH+ L H RVVF+EIT+ +
Sbjct: 63 ILKELRDAAKKVKHVYLAADPDREGEAIAWHLAHSLDIDAQSH-----CRVVFNEITKQA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A + R I+ +LV A ARR LD L+G+NISPLLW+K+ SAGRVQS A+ LI D
Sbjct: 118 IKEAFKHPRSINMDLVYAQQARRILDRLVGYNISPLLWKKVKKGLSAGRVQSVAVKLIID 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI FKP+EYW++ A L K D F A ++ + + + E I
Sbjct: 178 RENEIKAFKPEEYWSITAYLSK------DGQEFEAKFYGLDGQKQD---LKAEDEVNVIL 228
Query: 590 QKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+KI V+K+ ++ ++NP +P+ITSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 229 EKIKGHPL-VVKSVQKRERKRNPVSPFITSTLQQEAARKLNFKAAKTMMLAQQLYEGIDL 287
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
+ GLITYMRTD +S+ A +E I + +G + + G R +K K AQ+AHE
Sbjct: 288 GKEGSTGLITYMRTDSTRVSNVAKEEAAEFIKQHFGQEYVGK-GSRPEKQKQK-AQDAHE 345
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L D +LY LIW R +A QM PA + + VD+ ++FR
Sbjct: 346 AIRPTSVMRDPQSVKKYLTRDQYRLYRLIWERFVASQMAPAVMDTMTVDL--EANGVIFR 403
Query: 769 SSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+++F GF Y ED D G + E L L G+ L ++E KQH
Sbjct: 404 ATGSKIKFPGFMKVYIEDNDDG-----------KQEEHRFLPELNEGEHLEAKQIEPKQH 452
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RY+E LVK+LEE GIGRPSTYA TL+ +Q R YVT++ R P G +V
Sbjct: 453 FTQPPPRYTEARLVKELEEKGIGRPSTYAPTLETIQKRGYVTLEDRRFVPTELGEIVIEL 512
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ +F E+ D FTA+ME LD + G W+ +L D+++ F A EK+
Sbjct: 513 MEEFFPEILDVGFTAEMERHLDEIEEGKENWQKILNDFYTEFEKRLQVAD-------EKI 565
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D + D C CG +++K R+G F+ C+ P C
Sbjct: 566 QNVEIADEV------ADEVCEKCGR-HMVYKFGRYGK--FLACSGFPDC 605
>gi|299822637|ref|ZP_07054523.1| DNA topoisomerase TopA [Listeria grayi DSM 20601]
gi|299816166|gb|EFI83404.1| DNA topoisomerase TopA [Listeria grayi DSM 20601]
Length = 703
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/662 (38%), Positives = 366/662 (55%), Gaps = 56/662 (8%)
Query: 344 LYPPSGKSV------VVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDF 397
L+P SG+++ V+VES KAK I+ YLG ++V S GH+RDL V + DF
Sbjct: 2 LWPKSGRNLIMADYLVIVESPAKAKTIEKYLGKKFKVKASMGHIRDLPKSQMGVDTEHDF 61
Query: 398 SMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHI---VEMLQQQDALHEN 454
+ LK +K A A+ + LA+DPDREGEAIAWH+ +E+ Q Q+
Sbjct: 62 EPRYITIRGKGPILKELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQSQEL---- 117
Query: 455 ITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQ 514
RVVF+EIT+ ++K + + R+ID +LV A ARR LD L+G+NISP+LW+K+
Sbjct: 118 ----RVVFNEITKDAVKESFKHPRKIDMDLVDAQQARRILDRLVGYNISPILWKKVKKGL 173
Query: 515 SAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRL 574
SAGRVQS AL LI DRE EI+ FKP+EYWT++ K + F A+ K+
Sbjct: 174 SAGRVQSVALRLIIDREKEINNFKPEEYWTIDGNFKKGKQE------FQANFYGVDGKKK 227
Query: 575 NQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATY 634
+ + E K++ ++ F V +K+ R P+ TS+LQQ+AA KLNF
Sbjct: 228 ---KLSNAEEVKEVMSRLKGKQFTVTDVTKKERYRNPAAPFTTSSLQQEAARKLNFRTRK 284
Query: 635 TMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPR 694
TM LAQ+LYEG+ L GLITYMRTD I+D A E I E+YG +
Sbjct: 285 TMMLAQQLYEGIALGKQGTVGLITYMRTDSTRIADSAVAEANQHIIEKYGKEFT--RSKK 342
Query: 695 KYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQI 754
+ K K AQ+AHEAIRPT R P+ + L D +LY LIW R +A QM PA + +
Sbjct: 343 RTDKNTKGAQDAHEAIRPTSALRSPSEMKDYLSRDQYRLYKLIWERFIASQMAPAILDTM 402
Query: 755 QVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTG 814
+VD+ N + FR++ S+V+F GF Y E+ ++++ E IL LK
Sbjct: 403 RVDLDN--NGVQFRANGSKVKFAGFMKVY----------VESNDDNKEEKENILPDLKKE 450
Query: 815 DPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRI 874
D + +E +QH TQPP RY+E LVK LEE+GIGRPSTY+ TL +Q RNYV++ ++
Sbjct: 451 DKVESQTLEQRQHFTQPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKR 510
Query: 875 LYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCT 934
P G +V+ + YF E+ D FTA+ME ELD V G W ++ +++ F
Sbjct: 511 FIPTELGEIVNELIEDYFPEILDVKFTANMENELDEVEHGKVAWVKVIDEFYKHFEP--- 567
Query: 935 CAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHP 994
++ + +K +EK A + C +CG +++K+ ++G F+ C+ P
Sbjct: 568 -----NVERADKEMEKIEIKDEPAGI-----DCDICG-SPMVYKMGKYGK--FLACSNFP 614
Query: 995 RC 996
C
Sbjct: 615 EC 616
>gi|385264738|ref|ZP_10042825.1| DNA topoisomerase I [Bacillus sp. 5B6]
gi|385149234|gb|EIF13171.1| DNA topoisomerase I [Bacillus sp. 5B6]
Length = 693
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 262/645 (40%), Positives = 366/645 (56%), Gaps = 44/645 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 7 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 66
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L + + RVVF+EIT+ +IK
Sbjct: 67 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLDLDLS-----SDCRVVFNEITKDAIK 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 122 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++FKP+EYWT+ K + +TF F K +L + + + K I +
Sbjct: 182 KEINDFKPEEYWTITGSFLKGK----ETFE-----AGFFGKNGKKLPLKNEEDVKAILAQ 232
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 233 LKGNKYTVDKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGKE 292
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A +E + I + YG + G RK KK +NAQ+AHEAIR
Sbjct: 293 GTVGLITYMRTDSTRISNTAVEEASAFIDQAYGKEYLA--GKRKPAKKNENAQDAHEAIR 350
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R PA L +L D L+LY LIW R +A QM PA + + VD+ N + FR++
Sbjct: 351 PTSVLRKPADLKAVLGRDQLRLYKLIWERFVASQMAPAVLDTMSVDLSN--NGLTFRANG 408
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y + + EE DR +L LK GD + ++E +QH TQP
Sbjct: 409 SKVKFAGFMKVYVEGKDDQL-----EEKDR-----MLPDLKEGDTVLSKDIEPEQHFTQP 458
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G++V + +
Sbjct: 459 PPRYTEARLVKTLEELGIGRPSTYAPTLDTIQRRGYVGLDNKRFVPTELGQIVLDLIMEF 518
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LD+V G TEW ++ +++ F A++ + +VE +E
Sbjct: 519 FPEIINVEFTAKMERDLDHVEDGQTEWVQIIDSFYTDFEKRVKKAEA-EMKEVE--IEPE 575
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ D C +CG +++K+ R+G F+ C+ P C
Sbjct: 576 YADE----------DCELCG-SRMVYKMGRYGK--FMACSNFPDC 607
>gi|375088635|ref|ZP_09734973.1| DNA topoisomerase I [Dolosigranulum pigrum ATCC 51524]
gi|374561600|gb|EHR32939.1| DNA topoisomerase I [Dolosigranulum pigrum ATCC 51524]
Length = 688
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/680 (37%), Positives = 378/680 (55%), Gaps = 64/680 (9%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK I+ YLG Y+V+ S GHVRDL V D+++ +
Sbjct: 4 KYLVIVESPAKAKTIEKYLGRNYKVVASKGHVRDLPKSRMGVDFDNEYEPDYITIRGKGP 63
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
L+ ++ AE + LA+DPDREGEAIAWH+ L+ D EN RVVF+EIT+ +
Sbjct: 64 VLQDLRRYAKKAEKVYLAADPDREGEAIAWHLSHALKL-DPEAEN----RVVFNEITKDA 118
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A + ++++A+L+ + ARR LD ++G+ ISPLLW+K+ SAGRVQS AL +ICD
Sbjct: 119 VKNAFKQPKKLNADLIDSQQARRILDRIVGYKISPLLWKKVKRGLSAGRVQSIALKMICD 178
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI +F+P+EYW++EA K S F A K+ + + ++ +++
Sbjct: 179 REDEIRKFEPEEYWSIEAKFKKSRS------KFEAKFFRLNGKKKD---LPNNEAVQEVI 229
Query: 590 QKINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
KI+ I R R+NP P + TS+LQQ+AANKLNF + TM +AQ+LYEG++L
Sbjct: 230 AKIDEDQPFNIDKVNRKERRRNPQPPFTTSSLQQEAANKLNFRTSKTMMVAQQLYEGIKL 289
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G GLITYMRTD ISD A E + I + YG+ +A + + K AQ+AHE
Sbjct: 290 GGGAPIGLITYMRTDSKRISDVAKAEATNYIHDEYGASYAARK--KSNVKNSSGAQDAHE 347
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P + L +D KLY+LIWSR +A QM+PA ++VDI + + FR
Sbjct: 348 AIRPTSVMREPEAIEKHLTKDQYKLYNLIWSRFVASQMKPAVYDTMRVDI--SQNGVTFR 405
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S+++F G+Q Y D K+N +L + G+ + L ++E QH
Sbjct: 406 ANGSKIKFQGYQKVYRDSST-----KDN----------MLPDMSEGESVKLDKLEPNQHF 450
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPPARYSE +L+K LEE G+GRPSTYA TL +Q R YVT+ + P G +V+ +
Sbjct: 451 TQPPARYSEATLIKTLEENGVGRPSTYAPTLATIQKRYYVTLTQKRFEPTELGEIVNEII 510
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYC--------------- 933
+F ++ D +FTAD+E +LD++ G EW ++ ++ F
Sbjct: 511 VEFFPDIVDINFTADLEVDLDSIEEGKNEWIDVIDKFYQGFKEEVDKAEEEMEEVEIQDE 570
Query: 934 ----TCAQSLHIHQVEKM--LEKTFGDSLFASLPNKDR-------SCPVCGEGTLIFKVS 980
C + H V KM K + S F N +CP CGEG ++ + S
Sbjct: 571 PAGFDCERCGH-EMVIKMGRYGKFYACSNFPDCRNTKPILKKVGVTCPDCGEGEVVQRKS 629
Query: 981 RFGAGYFIGCNQHPRCNYIA 1000
+ G +F GC ++P C + +
Sbjct: 630 KKGRIFF-GCERYPDCEFTS 648
>gi|419443136|ref|ZP_13983162.1| DNA topoisomerase I [Streptococcus pneumoniae GA13224]
gi|379550601|gb|EHZ15698.1| DNA topoisomerase I [Streptococcus pneumoniae GA13224]
Length = 695
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/652 (39%), Positives = 370/652 (56%), Gaps = 58/652 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 14 KNLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGP 73
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ +
Sbjct: 74 LINDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDA 128
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI D
Sbjct: 129 VKNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIID 188
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 189 RENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVL 239
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 240 SRLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIG 299
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEA 706
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+A
Sbjct: 300 SGV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDA 352
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + +
Sbjct: 353 HEAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQ 410
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
F ++ S+V+F G+ A Y D D +L + GD + + +Q
Sbjct: 411 FAANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQ 454
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 455 HFTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNK 514
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 515 LIVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEE 566
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 567 EMEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|242373541|ref|ZP_04819115.1| DNA topoisomerase I [Staphylococcus epidermidis M23864:W1]
gi|242348904|gb|EES40506.1| DNA topoisomerase I [Staphylococcus epidermidis M23864:W1]
Length = 689
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKHAKKAKKVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KDSFKHPREIEMELVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKS------KFNAKFLHYKNK---PYKLNKKEDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVNKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E ++ I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDSAKAEAKNYITDKYGKEYISK---RKATGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + I +D+ D I FR++
Sbjct: 346 RPTSALRTPDDMKPYLTRDQHRLYKLIWERFVASQMAPAILDTIALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K++++N++ L L+ GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKDNEKENK---LPKLEEGDKVTATQIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVYEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ D+++ F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDMNWRKVVGDFYNSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEVCG-APMVIKMGRYGK--FMACSNFPDC 603
>gi|384265195|ref|YP_005420902.1| DNA topoisomerase I [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
gi|380498548|emb|CCG49586.1| DNA topoisomerase I [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
Length = 691
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 262/645 (40%), Positives = 366/645 (56%), Gaps = 44/645 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L + + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLDLDLS-----SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++FKP+EYWT+ K + +TF F K +L + S + K + +
Sbjct: 180 KEINDFKPEEYWTITGSFLKGK----ETFE-----AGFFGKSGKKLPLKSEEDVKAVLAQ 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LKGNKYTVDKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGKE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A +E + I + YG + G RK KK +NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISNTAVEEASAFIDQAYGKEYLA--GKRKPAKKNENAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R PA L +L D L+LY LIW R +A QM PA + + VD+ N + FR++
Sbjct: 349 PTSVLRKPADLKAVLGRDQLRLYKLIWERFVASQMAPAVLDTMSVDLSN--NGLTFRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y + + EE DR +L LK GD + ++E +QH TQP
Sbjct: 407 SKVKFAGFMKVYVEGKDDQL-----EEKDR-----MLPDLKEGDTVLSKDIEPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G++V + +
Sbjct: 457 PPRYTEARLVKTLEELGIGRPSTYAPTLDTIQRRGYVGLDNKRFVPTELGQIVLDLIMEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LD+V G TEW ++ +++ F A++ + +VE +E
Sbjct: 517 FPEIINVEFTAKMERDLDHVEDGQTEWVQIIDSFYTDFEKRVKKAEA-EMKEVE--IEPE 573
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ D C +CG +++K+ R+G F+ C+ P C
Sbjct: 574 YADE----------DCELCG-SRMVYKMGRYGK--FMACSNFPDC 605
>gi|375362256|ref|YP_005130295.1| DNA topoisomerase I [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
gi|421731717|ref|ZP_16170840.1| DNA topoisomerase I [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|451347016|ref|YP_007445647.1| DNA topoisomerase I [Bacillus amyloliquefaciens IT-45]
gi|371568250|emb|CCF05100.1| DNA topoisomerase I [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
gi|407073930|gb|EKE46920.1| DNA topoisomerase I [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|449850774|gb|AGF27766.1| DNA topoisomerase I [Bacillus amyloliquefaciens IT-45]
Length = 691
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 262/645 (40%), Positives = 366/645 (56%), Gaps = 44/645 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L + + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLDLDLS-----SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++FKP+EYWT+ K + +TF F K +L + S + K + +
Sbjct: 180 KEINDFKPEEYWTITGSFLKGK----ETFE-----AGFFGKNGKKLPLKSEEDVKAVLAQ 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LKGNKYTVDKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGKE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A +E + I + YG + G RK KK +NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISNTAVEEASAFIDQAYGKEYLA--GKRKPAKKNENAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R PA L +L D L+LY LIW R +A QM PA + + VD+ N + FR++
Sbjct: 349 PTSVLRKPADLKAVLGRDQLRLYKLIWERFVASQMAPAVLDTMSVDLSN--NGLTFRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y + + EE DR +L LK GD + ++E +QH TQP
Sbjct: 407 SKVKFAGFMKVYVEGKDDQL-----EEKDR-----MLPDLKEGDTVLSKDIEPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G++V + +
Sbjct: 457 PPRYTEARLVKTLEELGIGRPSTYAPTLDTIQRRGYVGLDNKRFVPTELGQIVLDLIMEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LD+V G TEW ++ +++ F A++ + +VE +E
Sbjct: 517 FPEIINVEFTAKMERDLDHVEDGETEWVQIIDSFYTDFEKRVKKAEA-EMKEVE--IEPE 573
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ D C +CG +++K+ R+G F+ C+ P C
Sbjct: 574 YADE----------DCELCG-SRMVYKMGRYGK--FMACSNFPDC 605
>gi|375085863|ref|ZP_09732485.1| DNA topoisomerase I [Megamonas funiformis YIT 11815]
gi|374566348|gb|EHR37593.1| DNA topoisomerase I [Megamonas funiformis YIT 11815]
Length = 749
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 265/686 (38%), Positives = 379/686 (55%), Gaps = 63/686 (9%)
Query: 350 KSVVVVESVTKAKVIQGYLGDM-YEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++VVVES TKAK I+ YLG+ Y V+ S GH+RDL + ++DF+ +
Sbjct: 4 KTLVVVESPTKAKTIEKYLGNKKYTVMASMGHLRDLPKSQFGIDVENDFAPKYINIRGKG 63
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+KS+K +E + LASDPDREGEAIAWH+ +L + HE R+VF+EIT+
Sbjct: 64 DLIKSLKKEAKKSEKVYLASDPDREGEAIAWHLSHILGIDE--HEK---CRIVFNEITKP 118
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I+ A++ +EI+ + V A ARR LD ++G+ +SPLLW+K+ SAGRVQS + LIC
Sbjct: 119 AIQEAVKNPKEINIDRVDAQQARRMLDRIVGYKLSPLLWKKIRKGLSAGRVQSVTVKLIC 178
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRL------NQLSIGSH 582
DRE EI +F+ +EYWTV+ KK S+ F A L K+L + I S
Sbjct: 179 DREKEIQKFESEEYWTVDFKFKKKPRSSM----FGAELVAIDDKKLMVSAKKEDVKIASK 234
Query: 583 TEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKL 642
+A ++ I F+V + KR RK P P+ TS+LQQDAA KL F++ TM +AQ+L
Sbjct: 235 AQADELCSDIEKVTFKVTEIKKRQRHRKAPAPFTTSSLQQDAARKLGFTSRKTMMIAQQL 294
Query: 643 YEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
YEG+ L GLITYMRTD IS+ A E R+ I E +G + PE+ P Y K+
Sbjct: 295 YEGISLGKKGPTGLITYMRTDSTRISEIALNEARNYIEENFGKEYLPEK-PYIYAAG-KS 352
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
+Q+AHEA+RPT+I PA + L ++ LKLY LIW R + CQM PA+ + V I
Sbjct: 353 SQDAHEAVRPTNIALSPATVEEYLSKEQLKLYKLIWQRFLGCQMLPASYDVMSVTIKG-- 410
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
+ + +++ S+++F GF A Y D D ++ E IL L+ GD L + ++
Sbjct: 411 DKYLAKATGSQLKFAGFTAVYNDSD------------NKKEKDVILPDLQEGDELSIQKL 458
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
E QH T+PPARY++ SLVK LEE GIGRPSTYA ++ + R YV + P G
Sbjct: 459 EAMQHFTEPPARYNDASLVKTLEERGIGRPSTYAPIIETILARGYVVRSDKKFEPTDLGF 518
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V L YF ++ D FTAD+E +LD ++ G + LL +++ F A+ I
Sbjct: 519 VVVDLLEKYFKDIVDEKFTADLENKLDEIAVGKIQKNTLLEEFYGPFEKTLEHAEE-EIG 577
Query: 943 QVE---------------KMLEKTFGDSLFASLPN-----------KDR--SCPVCGEGT 974
+VE M+ K F + P KD CP CG G
Sbjct: 578 EVEVPDEVSDVQCELCGRMMVIKQGRYGKFLACPGFPECRNTKPILKDTGVKCPKCG-GK 636
Query: 975 LIFKVSRFGAGYFIGCNQHPRCNYIA 1000
+I + +R G F GC +P+C+Y++
Sbjct: 637 IIERRTRRGV-VFYGCENYPQCDYVS 661
>gi|403378817|ref|ZP_10920874.1| TopA [Paenibacillus sp. JC66]
Length = 692
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/646 (39%), Positives = 352/646 (54%), Gaps = 43/646 (6%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES KAK I YLG Y V S GH+RDL V +F + +
Sbjct: 4 SLVIVESPAKAKTIGKYLGSKYIVKASMGHIRDLPKSQIGVEVKRNFEPKYITIRGKGSV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A + + LA+DPDREGEAIAWH+ L+ D+ RVVF+EIT+ ++
Sbjct: 64 LKELKDARKKVKKVYLAADPDREGEAIAWHLAHYLELSDS-----EPCRVVFNEITKQAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R I+ +LV A ARR LD L+G+ ISPLLW+K+ SAGRVQS A+ LI DR
Sbjct: 119 KDAFKTPRPINKDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKLINDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F P EYW++ A L +S F A K+ + + + E I +
Sbjct: 179 ENEIKGFVPVEYWSITAQLKSGKS------KFEAKFYSLDGKKTD---LNNEDEVNQILK 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I+ +F V + ++ R P+ITSTLQQ+AA KLNF A TM +AQ+LYEG++L
Sbjct: 230 VIDKESFIVQEVKEKERQRHPSAPFITSTLQQEAARKLNFRAAKTMSVAQQLYEGIELGK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A +E + I ++G+ P PR Y KK N Q+AHEA+
Sbjct: 290 EGTVGLITYMRTDSTRISPAAQEEAKQFIEGKFGAEFVPS-TPRVYSKKNSNTQDAHEAV 348
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ + R P + L D +LY LIW R +A QM A + + VDI S VFR+
Sbjct: 349 RPSSVLRQPDEIKSFLSRDQYRLYKLIWERFVASQMTSAVLDTMTVDIAAG--SAVFRAV 406
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+V+F GF Y + + E E DR +L L GD + ++E KQH TQ
Sbjct: 407 GSKVKFPGFMKVYVEGNDD-----ETTEEDR-----LLPPLGKGDEVNAEQIEPKQHFTQ 456
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LV+ LEELGIGRPSTYA TL+ +Q R YV ++ + P G +V +
Sbjct: 457 PPPRYTEARLVRTLEELGIGRPSTYAPTLETIQRRGYVALEEKKFVPTELGELVVELMEE 516
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F E+ D FTA+ME ELD+V G W +L +++ F A+ E+M E
Sbjct: 517 FFPEILDVEFTANMEEELDHVEEGKENWIKVLDEFYQSFEKRLEYAE-------EEMKEI 569
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D + D C CG+ +++K+ RFG F+ C+ P C
Sbjct: 570 EIQDEV------SDEICEKCGQ-PMVYKMGRFGK--FLACSGFPDC 606
>gi|419774399|ref|ZP_14300369.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CO-23]
gi|383971925|gb|EID87987.1| DNA topoisomerase I [Staphylococcus aureus subsp. aureus CO-23]
Length = 683
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 249/643 (38%), Positives = 358/643 (55%), Gaps = 46/643 (7%)
Query: 354 VVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKS 413
++ + K K I+ YLG Y+V+ S GHVRDL V +D++ + +K
Sbjct: 1 MLNRLQKQKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPVVKE 60
Query: 414 IKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVA 473
+K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++K +
Sbjct: 61 LKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAVKES 115
Query: 474 LQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREME 533
+ REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DRE E
Sbjct: 116 FKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDRENE 175
Query: 534 IDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKIN 593
I FKP+EYWT+E K+S F A H+++K + + + + I ++
Sbjct: 176 IRNFKPEEYWTIEGEFRYKKS------KFNAKFLHYKNK---PFKLKTKKDVEKITAALD 226
Query: 594 SANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTA 653
F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 227 GDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKKQGT 286
Query: 654 AGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPT 713
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAIRP+
Sbjct: 287 IGLITYMRTDSTRISDTAKVEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAIRPS 342
Query: 714 DIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSR 773
R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 343 STMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRANGQT 400
Query: 774 VEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPA 833
++F GF Y + + KEN+ L L+ GD + ++E QH+TQPP
Sbjct: 401 IKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQPPP 450
Query: 834 RYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFS 893
RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V + YF
Sbjct: 451 RYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKEYFP 510
Query: 894 EVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFG 953
E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 511 EIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEEMEK 559
Query: 954 DSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C +CG ++ K+ R+G F+ C+ P C
Sbjct: 560 IEIKDEPAGED--CEICG-SPMVIKMGRYGK--FMACSNFPDC 597
>gi|417849372|ref|ZP_12495293.1| DNA topoisomerase I [Streptococcus mitis SK1080]
gi|339456250|gb|EGP68842.1| DNA topoisomerase I [Streptococcus mitis SK1080]
Length = 695
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/651 (39%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ L + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFQASFYGVDGKK---LKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLASKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A I V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTIAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMSVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|442320436|ref|YP_007360457.1| DNA topoisomerase I [Myxococcus stipitatus DSM 14675]
gi|441488078|gb|AGC44773.1| DNA topoisomerase I [Myxococcus stipitatus DSM 14675]
Length = 856
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 270/667 (40%), Positives = 369/667 (55%), Gaps = 51/667 (7%)
Query: 347 PSGKS---VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEV 403
P GK +VVVES KAK I+ YLG Y V S GHV+DL V + DF +EV
Sbjct: 72 PRGKGPHYLVVVESPAKAKTIKKYLGSGYSVKASVGHVKDLPKSKMGVDVEHDFQPEYEV 131
Query: 404 PSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFH 463
L +K A+ + LA+DPDREGEAIAWHI E L DA+ RV F+
Sbjct: 132 IKGKEKVLNELKKMAKSADKVFLATDPDREGEAIAWHIKEELAHPDAM-------RVTFN 184
Query: 464 EITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAA 523
EIT+ +I+ A+ RE++ + + RR LD L+G+ ISPLLW+K+ SAGRVQS A
Sbjct: 185 EITKKAIQEAIAQPRELNQDNYDSQQTRRILDRLVGYQISPLLWQKIRRGLSAGRVQSVA 244
Query: 524 LSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHT 583
+ LI +RE EI F P+EYWT++A+L+ F A L+ K++ +L T
Sbjct: 245 VRLIVEREAEIKAFVPEEYWTLDALLEGPSGPP----PFKAKLSKVDGKKV-ELKDRVGT 299
Query: 584 EAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLY 643
EA + ++ A F V K +R R P P+ITS LQQ+AAN+L+F+A TM LAQKLY
Sbjct: 300 EA--LVSELQGAEFTVAKVDRRERRRNAPAPFITSKLQQEAANRLSFTAKKTMTLAQKLY 357
Query: 644 EGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA 703
EGV L + LITYMRTD +SD+A K++R +I +YG + PEE P Y K K+A
Sbjct: 358 EGVPLGEEGQTALITYMRTDSTRLSDDAVKQVREMIGTKYGGDYLPEE-PVVY-KSRKSA 415
Query: 704 QEAHEAIRPTDIR----RLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIG 759
Q+AHEAIRPT + R+ + ++D +LY LIW+R +ACQM+PA Q DI
Sbjct: 416 QDAHEAIRPTSLEYPPERVRPFFEAMDEQDMYRLYELIWNRFVACQMKPAVYDQTSADIS 475
Query: 760 NADESIVFRSSCSRVEFLGFQAAY------EDVDAGAIRYKENEEN--DRHEAFAILNSL 811
FR+S S ++F G+ A Y E+ +EN D +A L L
Sbjct: 476 AG--RATFRASGSTLKFPGYLAVYGASLTPEEEAEKEKAKAAGDENAADGADAVGDLPVL 533
Query: 812 KTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK 871
GD L L ++ +QH TQPP R+SE +LVK+LEE GIGRPSTYA+ L +QD+ YV
Sbjct: 534 NDGDKLALQKLLHEQHFTQPPPRFSEATLVKELEEKGIGRPSTYAAILSTIQDKKYVEKL 593
Query: 872 SRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSS 931
P G+M + L +F D +FTA ME +LD +S G T WK +L D++ F
Sbjct: 594 EGRFRPTDLGQMTNEMLVKHFPHELDVTFTATMEEKLDQISDGGTSWKAVLHDFYGPFKE 653
Query: 932 YCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFG-AGYFIGC 990
A++ + V++ KT D +C CG +I +FG G+F+ C
Sbjct: 654 TLEKAKA-EMRDVKREEIKT------------DIACEKCGNHFVI----KFGKMGHFLAC 696
Query: 991 NQHPRCN 997
+ +P C
Sbjct: 697 SNYPDCK 703
>gi|110801774|ref|YP_698989.1| DNA topoisomerase I [Clostridium perfringens SM101]
gi|110682275|gb|ABG85645.1| DNA topoisomerase [Clostridium perfringens SM101]
Length = 700
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 268/683 (39%), Positives = 380/683 (55%), Gaps = 67/683 (9%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KAK I+ YLG Y V S GHVRDL V ++D++ +
Sbjct: 2 GQKLVIVESPAKAKTIEKYLGKNYVVEASMGHVRDLPKSQLGVDIENDYNPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L ++ ++ + LA+DPDREGEAI+WH+ +L+ + +EN R+ F+EIT+
Sbjct: 62 ELLSKLRKLAKKSDKIYLATDPDREGEAISWHLANVLKIDE--NEN---CRIEFNEITKD 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K +++ R+I+ NLV A ARR LD L+G+ ISPLLWR + SAGRVQSAAL LIC
Sbjct: 117 AVKNSIKHPRKINCNLVDAQQARRVLDRLVGYEISPLLWRNVKWGLSAGRVQSAALKLIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI +F P+EYWTV+ L K + SFP LT +K ++ I + +A I
Sbjct: 177 DREEEIKKFNPEEYWTVDVKLKKGKK------SFPVKLT---TKNKKKIEIKNKEQADQI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
++ + ++ K+ KNP P+ TSTLQQ+A+ KLNF TM +AQ+LYEGV+
Sbjct: 228 IDELKENEY-IVSKIKKGTKNKNPLAPFTTSTLQQEASKKLNFMTKKTMSVAQQLYEGVE 286
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GLITYMRTD + IS EA ++ + I E YG + PEE PR Y K KN Q+AH
Sbjct: 287 VKKFGTVGLITYMRTDSVRISKEAQEKALNFIDETYGKEYVPEE-PRVY-KGKKNIQDAH 344
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT + P + L D KLY+LIW R +A QM + ++I N D ++
Sbjct: 345 EAIRPTYVEITPEIAKTNLSNDQYKLYALIWKRFIASQMATCILNTNSLEIKNGDYTL-- 402
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+S S ++F GF YE + E EE+ +L L+ + L +E KQH
Sbjct: 403 RASGSTIKFDGFMKVYEYISG------EEEES------VLLPELEENEVLKEESIEGKQH 450
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE + VK LEE GIGRPSTY T+ L R YV + +IL P G +V+
Sbjct: 451 FTQPPARYSEAAFVKLLEEKGIGRPSTYVPTISTLISRKYVDREKKILIPTELGFIVNDI 510
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFS----------------- 930
LS+YF ++ D FTA+ME +LDNV AG W ++ ++++
Sbjct: 511 LSNYFKQIVDTDFTAEMEVKLDNVEAGKESWTHIVDEFFTPLKEDIEKAEKEISKVIIED 570
Query: 931 --SYCTCAQSLHIHQVEKMLEKTFGDSL----FASLPNK-------DRSCPVCGEGTLIF 977
SY C + + ++ FGD L + N D +CP+CG G ++
Sbjct: 571 KVSYVPCDKCGRLMVIK---HGRFGDFLACPGYPECQNTKPIVEEVDANCPLCG-GKILV 626
Query: 978 KVSRFGAGYFIGCNQHPRCNYIA 1000
K S+ G F GC+ +P CN+++
Sbjct: 627 KRSKKG-NRFYGCSNYPECNFVS 648
>gi|373118103|ref|ZP_09532239.1| DNA topoisomerase I [Lachnospiraceae bacterium 7_1_58FAA]
gi|371667667|gb|EHO32786.1| DNA topoisomerase I [Lachnospiraceae bacterium 7_1_58FAA]
Length = 776
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 253/653 (38%), Positives = 362/653 (55%), Gaps = 50/653 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I YLG YEV S GHVRDL V + F + ++
Sbjct: 5 NLVIVESPAKAKTIGKYLGPGYEVKASMGHVRDLPKSKLGVDVEHGFELNYQPIKGKEEV 64
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K + +E + LA+DPDREGEAI+WH+ EML D RV F+EIT+ +
Sbjct: 65 IDELKKSAKKSEKVFLATDPDREGEAISWHLKEMLGIPDD-----KTYRVTFNEITKKVV 119
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
++ R ID +LV A ARR LD ++G+ ISPLLW+K+ SAGRVQS A L+C+R
Sbjct: 120 NDSIAHPRAIDMDLVNAQQARRVLDRIVGYQISPLLWKKIRRGLSAGRVQSVATRLVCER 179
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSK---RLNQLSIGSHTEAKD 587
E +I F PQEYW+++A L + +L F++ R ++ + S E
Sbjct: 180 EADIKAFVPQEYWSLDADLSR----------IAPNLGQFKASFYGREKKVELNSEAEVNA 229
Query: 588 IEQKINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ + + +A F V KR ++NP P +ITSTLQQ+A+ KLN + TM +AQ+LYEGV
Sbjct: 230 VMEAVKNAPFAVT-GVKRQDKQRNPAPPFITSTLQQEASRKLNMTPRRTMSIAQQLYEGV 288
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ GLITYMRTD L +SDEA + I RYG+ + P G + +K AQ+A
Sbjct: 289 DIEGEGTVGLITYMRTDSLRLSDEATAAAKEFILARYGADYYP--GKARVYKTKSGAQDA 346
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP+++ P + L + KLY LIWSR +ACQM PA + +++ +A
Sbjct: 347 HEAIRPSNVNLTPEDIKKSLTAEQYKLYKLIWSRFLACQMAPAVYDSVSIEVASA--GYT 404
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAF-AILNSLKTGDPLYLGEVELK 825
FR++ S ++F G+ A Y + K+ EE EAF + L LK G+ L L ++
Sbjct: 405 FRATHSALKFSGYTAVY-------VEGKDEEE----EAFQSPLPDLKEGEALKLEALKPD 453
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH TQPP+RY+E +L+K LEE GIGRPSTYA T+ + DR YV + + L P G +V+
Sbjct: 454 QHFTQPPSRYTEATLIKALEEKGIGRPSTYAPTISTILDREYVVKEGKNLRPTPLGEVVT 513
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
+ F+++ D +FTA ME LD V G +WK LL D++ F + + E
Sbjct: 514 GLMKDKFTDIVDTAFTATMEERLDEVETGKVDWKSLLGDFYGDFEQ--------ELQKAE 565
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
L+ G+ + D CP CG L++K RFG F+ C P C++
Sbjct: 566 ADLD---GERIKVPDEVSDVICPKCGR-NLVYKSGRFGR--FLACPGWPECDH 612
>gi|126656660|ref|ZP_01727874.1| DNA topoisomerase I [Cyanothece sp. CCY0110]
gi|126621880|gb|EAZ92588.1| DNA topoisomerase I [Cyanothece sp. CCY0110]
Length = 881
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 297/845 (35%), Positives = 436/845 (51%), Gaps = 97/845 (11%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSG--------------SVRPDDD 396
++V+VES TKA+ I+ YL Y+V S GHVRDL A + V ++
Sbjct: 3 TLVIVESPTKARTIRNYLPQGYQVEASMGHVRDLPASADEIPASYKDKDWANLGVNVENG 62
Query: 397 FSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENIT 456
F ++ +P ++ +K AL A+ LILA+D DREGE+I+WH++++L+ + +
Sbjct: 63 FEPIYVIPKGKKKVVQGLKSALKSADELILATDEDREGESISWHLLQLLKPK------VP 116
Query: 457 VARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSA 516
+ R+VFHEIT +I+ +L+ R+ID NLV A RR LD L G+ +SPLLW+K+ SA
Sbjct: 117 IKRMVFHEITREAIQKSLKNCRDIDENLVHAQETRRILDRLYGYTLSPLLWKKIAWGLSA 176
Query: 517 GRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRL-- 574
GRVQS A+ L+ RE + F+ YW ++A+L+K++S F A L K++
Sbjct: 177 GRVQSVAVRLLVQRERDRLAFQSGGYWDLKALLEKEKS------PFEAKLITLGGKKIAT 230
Query: 575 --------------NQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTL 620
+ + + EA +++++ + V K +++ RK P+ TSTL
Sbjct: 231 GSDFDPNTGKIAQGRDVVLLNEQEANTLKERLEGKTWTVTKKEEKATTRKPYAPFTTSTL 290
Query: 621 QQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIF 680
QQ++ KL+ SA TM++AQKLYE G ITYMRTD +H+SDEA K R+ +
Sbjct: 291 QQESNRKLSISARDTMRIAQKLYE---------EGYITYMRTDSVHLSDEAIKAARNCVE 341
Query: 681 ERYGSHH-APEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWS 739
E+YG + +P+ PR+Y K K AQEAHEAIRP R +GL ++ LY LIW
Sbjct: 342 EKYGKEYLSPK--PRQYTTKSKGAQEAHEAIRPAGNRFRTPQETGLSGQE-FALYDLIWK 398
Query: 740 RTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAY----EDVDAGAIRYKE 795
RT+A QM A + QI V + D FRSS R++F GF AY +D DA E
Sbjct: 399 RTVASQMANAKLTQISVLLDVEDAG--FRSSGKRIDFPGFFRAYVEGSDDPDAAI----E 452
Query: 796 NEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTY 855
++E IL L GD E+++ H TQPPARY+E SLVK LE G+GRPSTY
Sbjct: 453 DQE-------VILPPLTEGDHPDCKELDVLGHETQPPARYTEASLVKMLEGEGVGRPSTY 505
Query: 856 ASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGL 915
AS + ++DR Y ++S+ L P F V L ++F ++ D FT+ ME LD ++ G
Sbjct: 506 ASIIGTIRDRGYAQMRSKALVPTFTAFAVVNLLENHFPDLVDTKFTSKMEQTLDEIATGE 565
Query: 916 TEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTL 975
+W L ++S T + + + Q++ + K +L N D +
Sbjct: 566 AQWVPYLQKFYSGEEGLDTQVK-VRVDQIDPGVAKAI------NLDNLDATV-------- 610
Query: 976 IFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQR--NTNVDEPKLIGHHPASKE 1033
K+ +FG I + I L D + + + + P+ +G HP + E
Sbjct: 611 --KIGKFGPYVEIEQGEEKITASIPADLTPSDLNPEQVNKLLKQKTEGPEKLGLHPETGE 668
Query: 1034 KVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKD 1092
+ + G YG YVQLGE PKRAS+ ++ +TL+ A+ LL P LG HP
Sbjct: 669 PIYILIGSYGPYVQLGEVSEENKKPKRASLPKGTKIEDVTLDMAVGLLALPRLLGTHPDT 728
Query: 1093 GQPIMLRLARAGFSVRHR-----RTIASVPKNMKPNDVTLEKALEFLSGKDVRRCGRPKG 1147
I L R G V H + S+ K VTLE+ALE L+ R G
Sbjct: 729 EAKIKASLGRFGPYVVHDQGKNGKDYRSLKKEDDVLTVTLERALELLAQPKKGRGGGRTK 788
Query: 1148 KPKRE 1152
KP +E
Sbjct: 789 KPLKE 793
>gi|253755535|ref|YP_003028675.1| DNA topoisomerase I [Streptococcus suis BM407]
gi|403061502|ref|YP_006649718.1| DNA topoisomerase I [Streptococcus suis S735]
gi|251817999|emb|CAZ55781.1| DNA topoisomerase I [Streptococcus suis BM407]
gi|402808828|gb|AFR00320.1| DNA topoisomerase I [Streptococcus suis S735]
Length = 697
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 249/649 (38%), Positives = 366/649 (56%), Gaps = 57/649 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D++++ +
Sbjct: 16 NLVIVESPAKAKTIEKYLGKNYKVVASVGHIRDLKKSSMSIDFDNNYAPEYINIRGKGPL 75
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ S+K A+ + LASDPDREGEAI+WH+ +L DA +N RVVF+EIT+ ++
Sbjct: 76 INSLKKEAKNAKQVFLASDPDREGEAISWHLAHILGL-DANDKN----RVVFNEITKDAV 130
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A Q R I+ +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 131 KNAFQEPRAINHDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 190
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT++A K F A K+ I ++ + K+I
Sbjct: 191 ENEISNFKPEEYWTIDATFKKGSK------KFQASFYGIDGKK---TKIENNEQVKEILA 241
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+++ +F V + ++ R P PY TST+Q DAANK+NF TM +AQ+LYEGV L
Sbjct: 242 RLDGDDFLVEQVERKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGVSLGT 301
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A + I ER+G+ ++ K+ KVKN AQ+AH
Sbjct: 302 GGTQGLITYMRTDSTRISPVAQAQAADFITERFGATYS------KHGNKVKNASGAQDAH 355
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+++ P ++ LD+D L+LY+LIW+R +A QM A + V +G ++F
Sbjct: 356 EAIRPSNVNLTPESIAKYLDKDQLRLYTLIWNRFVASQMAAAVFDTMSVRLGQ--NGVIF 413
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L ++ GD + +QH
Sbjct: 414 AANGSQVKFDGYMAVYNDSDKN----------------KMLPDMEQGDTVVRTSTNPEQH 457
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 458 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVKLAAKRFEPTELGEIVNKL 517
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ +F ++ + FTADME +LD+V G +W+ ++ ++ F + + + E+
Sbjct: 518 IVEFFPDIVNVKFTADMEQKLDDVEIGKEQWQKVIDGFYQPF--------KVELSKAEEQ 569
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+EK A C VCG ++ K+ RFG F C+ P C
Sbjct: 570 MEKIQIKDEPAGF-----DCDVCGH-EMVIKLGRFGK--FYACSNFPDC 610
>gi|303231446|ref|ZP_07318177.1| DNA topoisomerase I [Veillonella atypica ACS-049-V-Sch6]
gi|302513883|gb|EFL55894.1| DNA topoisomerase I [Veillonella atypica ACS-049-V-Sch6]
Length = 772
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/683 (37%), Positives = 373/683 (54%), Gaps = 61/683 (8%)
Query: 344 LYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEV 403
+Y P GK +V+VES K+K I+ +LG Y V S GH+RDL + D DF+ +
Sbjct: 60 VYNPDGKILVIVESPAKSKTIEKFLGPNYIVKASMGHLRDLPKSQMGIDIDHDFTPRYSN 119
Query: 404 PSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFH 463
A + + + ++LA+DPDREGEAI+WH+ +L + + R+ F+
Sbjct: 120 LVARKKVIDDLVAHADESSAVLLATDPDREGEAISWHLAYILNV-----DTTSNCRITFN 174
Query: 464 EITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAA 523
EIT+ ++ AL+ R +D N+V A ARR LD ++G+ +SPLLW+K+ SAGRVQS A
Sbjct: 175 EITKTAVAEALEHPRTVDMNMVDAQQARRVLDRIVGYKLSPLLWKKVCKGLSAGRVQSVA 234
Query: 524 LSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHT 583
+ LIC+RE EI F PQEYW++E K + F A LTH + +L+ I
Sbjct: 235 VRLICEREREIQAFVPQEYWSIEGQFKTKTNEE-----FSAELTHVKGDKLD---ITCEA 286
Query: 584 EAKDIEQKI--NSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQK 641
+A I++ I ++A +K SKRS RK P+ TSTLQQD KLNF A TM +AQ
Sbjct: 287 DAVAIQKAIADHTATVTSVKKSKRS--RKPAPPFTTSTLQQDGVRKLNFGAKRTMMIAQH 344
Query: 642 LYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVK 701
LYEG+++ GLITYMRTD IS + ++ R I YG + P + P Y KK +
Sbjct: 345 LYEGLEIGSYGHVGLITYMRTDSTRISKDMQEQARDYIKRTYGDDYCPAK-PNVYGKK-E 402
Query: 702 NAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNA 761
+AQ+AHEAIRPT + P M+ ++ D LKLY+LIW+R MA QM P +++ +
Sbjct: 403 SAQDAHEAIRPTSLELTPKMVEPFVNRDELKLYTLIWNRFMASQMAPQQNESTTIEL-DI 461
Query: 762 DESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGE 821
D++ F+++ SRV F GF A YED + E L +LK D +
Sbjct: 462 DDTYTFKATGSRVLFPGFSAVYED--------------SKKEDTPQLPALKKSDVVETVL 507
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRG 881
++ +QH TQPPARYSE SL+K LEELGIGRPSTYA + + RNYV ++ P G
Sbjct: 508 IDPEQHFTQPPARYSEASLIKTLEELGIGRPSTYAPIIDTIVSRNYVETNNKQFIPTELG 567
Query: 882 RMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI 941
+V FL YF ++ + FTA++E ELD ++ G + +L D+++ F A +
Sbjct: 568 FVVVDFLVDYFEKIINTGFTAELEEELDAIANGKDTYVKVLTDFYNIFKQELDDASDVDK 627
Query: 942 HQVEKM------------LEKTFGD-------SLFASLPNKDR-------SCPVCGEGTL 975
Q+ M + FG S F N +CP CGEG +
Sbjct: 628 IQIASMESDETCELCGHPMVYKFGRYGKFLACSNFPECKNTKPITVGTGVACPKCGEGEI 687
Query: 976 IFKVSRFGAGYFIGCNQHPRCNY 998
+ + S+ G F GCN++P+C++
Sbjct: 688 VERKSKRGR-IFYGCNRYPQCDF 709
>gi|168491180|ref|ZP_02715323.1| DNA topoisomerase I [Streptococcus pneumoniae CDC0288-04]
gi|169834151|ref|YP_001694689.1| DNA topoisomerase I [Streptococcus pneumoniae Hungary19A-6]
gi|225860906|ref|YP_002742415.1| DNA topoisomerase I [Streptococcus pneumoniae Taiwan19F-14]
gi|298229525|ref|ZP_06963206.1| DNA topoisomerase I [Streptococcus pneumoniae str. Canada MDR_19F]
gi|298254328|ref|ZP_06977914.1| DNA topoisomerase I [Streptococcus pneumoniae str. Canada MDR_19A]
gi|298502740|ref|YP_003724680.1| DNA topoisomerase I [Streptococcus pneumoniae TCH8431/19A]
gi|387788105|ref|YP_006253173.1| DNA topoisomerase I [Streptococcus pneumoniae ST556]
gi|417312791|ref|ZP_12099503.1| DNA topoisomerase I [Streptococcus pneumoniae GA04375]
gi|418083163|ref|ZP_12720362.1| DNA topoisomerase I [Streptococcus pneumoniae GA44288]
gi|418091890|ref|ZP_12729032.1| DNA topoisomerase I [Streptococcus pneumoniae GA44452]
gi|418094069|ref|ZP_12731196.1| DNA topoisomerase I [Streptococcus pneumoniae GA49138]
gi|418100294|ref|ZP_12737382.1| DNA topoisomerase I [Streptococcus pneumoniae 7286-06]
gi|418119968|ref|ZP_12756919.1| DNA topoisomerase I [Streptococcus pneumoniae GA18523]
gi|418141823|ref|ZP_12778636.1| DNA topoisomerase I [Streptococcus pneumoniae GA13455]
gi|418152980|ref|ZP_12789719.1| DNA topoisomerase I [Streptococcus pneumoniae GA16121]
gi|418164573|ref|ZP_12801243.1| DNA topoisomerase I [Streptococcus pneumoniae GA17371]
gi|418193874|ref|ZP_12830365.1| DNA topoisomerase I [Streptococcus pneumoniae GA47439]
gi|418195470|ref|ZP_12831950.1| DNA topoisomerase I [Streptococcus pneumoniae GA47688]
gi|418227822|ref|ZP_12854440.1| DNA topoisomerase I [Streptococcus pneumoniae 3063-00]
gi|419427210|ref|ZP_13967393.1| DNA topoisomerase I [Streptococcus pneumoniae 5652-06]
gi|419429387|ref|ZP_13969554.1| DNA topoisomerase I [Streptococcus pneumoniae GA11856]
gi|419436104|ref|ZP_13976194.1| DNA topoisomerase I [Streptococcus pneumoniae 8190-05]
gi|419444556|ref|ZP_13984571.1| DNA topoisomerase I [Streptococcus pneumoniae GA19923]
gi|419448869|ref|ZP_13988866.1| DNA topoisomerase I [Streptococcus pneumoniae 4075-00]
gi|419451572|ref|ZP_13991558.1| DNA topoisomerase I [Streptococcus pneumoniae EU-NP02]
gi|419493413|ref|ZP_14033139.1| DNA topoisomerase I [Streptococcus pneumoniae GA47210]
gi|419501967|ref|ZP_14041651.1| DNA topoisomerase I [Streptococcus pneumoniae GA47628]
gi|419519025|ref|ZP_14058631.1| DNA topoisomerase I [Streptococcus pneumoniae GA08825]
gi|419528645|ref|ZP_14068187.1| DNA topoisomerase I [Streptococcus pneumoniae GA17719]
gi|421211328|ref|ZP_15668311.1| DNA topoisomerase I [Streptococcus pneumoniae 2070035]
gi|421232003|ref|ZP_15688646.1| DNA topoisomerase I [Streptococcus pneumoniae 2080076]
gi|421249548|ref|ZP_15706006.1| DNA topoisomerase I [Streptococcus pneumoniae 2082239]
gi|421289861|ref|ZP_15740612.1| DNA topoisomerase I [Streptococcus pneumoniae GA54354]
gi|421305180|ref|ZP_15755836.1| DNA topoisomerase I [Streptococcus pneumoniae GA62331]
gi|168996653|gb|ACA37265.1| DNA topoisomerase I [Streptococcus pneumoniae Hungary19A-6]
gi|183574406|gb|EDT94934.1| DNA topoisomerase I [Streptococcus pneumoniae CDC0288-04]
gi|225727546|gb|ACO23397.1| DNA topoisomerase I [Streptococcus pneumoniae Taiwan19F-14]
gi|298238335|gb|ADI69466.1| DNA topoisomerase I [Streptococcus pneumoniae TCH8431/19A]
gi|327389499|gb|EGE87844.1| DNA topoisomerase I [Streptococcus pneumoniae GA04375]
gi|353755239|gb|EHD35844.1| DNA topoisomerase I [Streptococcus pneumoniae GA44288]
gi|353763990|gb|EHD44540.1| DNA topoisomerase I [Streptococcus pneumoniae GA44452]
gi|353764565|gb|EHD45113.1| DNA topoisomerase I [Streptococcus pneumoniae GA49138]
gi|353773003|gb|EHD53502.1| DNA topoisomerase I [Streptococcus pneumoniae 7286-06]
gi|353789081|gb|EHD69477.1| DNA topoisomerase I [Streptococcus pneumoniae GA18523]
gi|353806074|gb|EHD86348.1| DNA topoisomerase I [Streptococcus pneumoniae GA13455]
gi|353817531|gb|EHD97733.1| DNA topoisomerase I [Streptococcus pneumoniae GA16121]
gi|353829434|gb|EHE09565.1| DNA topoisomerase I [Streptococcus pneumoniae GA17371]
gi|353859094|gb|EHE39049.1| DNA topoisomerase I [Streptococcus pneumoniae GA47439]
gi|353861997|gb|EHE41930.1| DNA topoisomerase I [Streptococcus pneumoniae GA47688]
gi|353882050|gb|EHE61862.1| DNA topoisomerase I [Streptococcus pneumoniae 3063-00]
gi|379137847|gb|AFC94638.1| DNA topoisomerase I [Streptococcus pneumoniae ST556]
gi|379551335|gb|EHZ16430.1| DNA topoisomerase I [Streptococcus pneumoniae GA11856]
gi|379564668|gb|EHZ29664.1| DNA topoisomerase I [Streptococcus pneumoniae GA17719]
gi|379572249|gb|EHZ37206.1| DNA topoisomerase I [Streptococcus pneumoniae GA19923]
gi|379593588|gb|EHZ58400.1| DNA topoisomerase I [Streptococcus pneumoniae GA47210]
gi|379600180|gb|EHZ64961.1| DNA topoisomerase I [Streptococcus pneumoniae GA47628]
gi|379615124|gb|EHZ79833.1| DNA topoisomerase I [Streptococcus pneumoniae 8190-05]
gi|379618663|gb|EHZ83338.1| DNA topoisomerase I [Streptococcus pneumoniae 5652-06]
gi|379623277|gb|EHZ87911.1| DNA topoisomerase I [Streptococcus pneumoniae EU-NP02]
gi|379623927|gb|EHZ88560.1| DNA topoisomerase I [Streptococcus pneumoniae 4075-00]
gi|379640862|gb|EIA05400.1| DNA topoisomerase I [Streptococcus pneumoniae GA08825]
gi|395573286|gb|EJG33877.1| DNA topoisomerase I [Streptococcus pneumoniae 2070035]
gi|395595632|gb|EJG55862.1| DNA topoisomerase I [Streptococcus pneumoniae 2080076]
gi|395613892|gb|EJG73917.1| DNA topoisomerase I [Streptococcus pneumoniae 2082239]
gi|395889102|gb|EJH00113.1| DNA topoisomerase I [Streptococcus pneumoniae GA54354]
gi|395905842|gb|EJH16747.1| DNA topoisomerase I [Streptococcus pneumoniae GA62331]
Length = 695
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 370/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E+ S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEVASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|253751760|ref|YP_003024901.1| DNA topoisomerase I [Streptococcus suis SC84]
gi|253753584|ref|YP_003026725.1| DNA topoisomerase I [Streptococcus suis P1/7]
gi|386577865|ref|YP_006074271.1| DNA topoisomerase I [Streptococcus suis GZ1]
gi|386579917|ref|YP_006076322.1| DNA topoisomerase I [Streptococcus suis JS14]
gi|386581941|ref|YP_006078345.1| DNA topoisomerase I [Streptococcus suis SS12]
gi|251816049|emb|CAZ51669.1| DNA topoisomerase I [Streptococcus suis SC84]
gi|251819830|emb|CAR45800.1| DNA topoisomerase I [Streptococcus suis P1/7]
gi|292558328|gb|ADE31329.1| DNA topoisomerase I [Streptococcus suis GZ1]
gi|319758109|gb|ADV70051.1| DNA topoisomerase I [Streptococcus suis JS14]
gi|353734087|gb|AER15097.1| DNA topoisomerase I [Streptococcus suis SS12]
Length = 697
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 249/649 (38%), Positives = 366/649 (56%), Gaps = 57/649 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D++++ +
Sbjct: 16 NLVIVESPAKAKTIEKYLGKNYKVVASVGHIRDLKKSSMSIDFDNNYAPEYINIRGKGPL 75
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ S+K A+ + LASDPDREGEAI+WH+ +L DA +N RVVF+EIT+ ++
Sbjct: 76 INSLKKEAKNAKQVFLASDPDREGEAISWHLAHILGL-DANDKN----RVVFNEITKDAV 130
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A Q R I+ +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 131 KNAFQEPRAINHDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 190
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT++A K F A K+ I ++ + K+I
Sbjct: 191 ENEISNFKPEEYWTIDATFKKGSK------KFQASFYGIDGKK---TKIENNEQVKEILA 241
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+++ +F V + ++ R P PY TST+Q DAANK+NF TM +AQ+LYEGV L
Sbjct: 242 RLDGDDFLVEQVERKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGVSLGT 301
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A + I ER+G+ ++ K+ KVKN AQ+AH
Sbjct: 302 GGTQGLITYMRTDSTRISPVAQAQAADFITERFGATYS------KHGNKVKNASGAQDAH 355
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+++ P ++ LD+D L+LY+LIW+R +A QM A + V +G ++F
Sbjct: 356 EAIRPSNVNLTPESIAKYLDKDQLRLYTLIWNRFVASQMAAAVFDTMSVRLGQ--NGVIF 413
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L ++ GD + +QH
Sbjct: 414 AANGSQVKFDGYMAVYNDSDKN----------------KMLPDMEQGDTVVRTSTNPEQH 457
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 458 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVKLAAKRFEPTELGEIVNKL 517
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ +F ++ + FTADME +LD+V G +W+ ++ ++ F + + + E+
Sbjct: 518 IVEFFPDIVNVKFTADMEQKLDDVEIGKEQWQKVIDGFYQPF--------KVELFKAEEQ 569
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+EK A C VCG ++ K+ RFG F C+ P C
Sbjct: 570 MEKIQIKDEPAGF-----DCDVCGH-EMVIKLGRFGK--FYACSNFPDC 610
>gi|322387951|ref|ZP_08061558.1| DNA topoisomerase TopA [Streptococcus infantis ATCC 700779]
gi|419842816|ref|ZP_14366149.1| DNA topoisomerase I [Streptococcus infantis ATCC 700779]
gi|321141224|gb|EFX36722.1| DNA topoisomerase TopA [Streptococcus infantis ATCC 700779]
gi|385703493|gb|EIG40610.1| DNA topoisomerase I [Streptococcus infantis ATCC 700779]
Length = 695
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/651 (39%), Positives = 371/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDVENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A+ + LASDPDREGEAI+WH+ +L L EN T RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKADKVFLASDPDREGEAISWHLAHILD----LDENDT-NRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K++ + ++ E K +
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGMNGKKM---KLTTNDEVKKVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 HLSSKDFTVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGT 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA---QEAH 707
G GLITYMRTD IS A E S I ER+GS ++ K+ KVKNA Q+AH
Sbjct: 301 GVQ-GLITYMRTDSTRISPVAQNEAASYINERFGSKYS------KHGSKVKNAYGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPEKIAKYLDKDQLKLYTLIWNRFVASQMTGAIFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D + L ++ GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKNKM----------------LPDMEVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + S+ P G++V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLASKRFEPTDLGQVVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + FTA+ME +LD+V G EW+ ++ +++ FS A++ ++EK+
Sbjct: 516 IVEYFPDIVNVKFTAEMEGKLDDVEVGKEEWQRVIDEFYKPFSKEVAKAEA----EMEKI 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
K C VCG ++ K+ RFG F C+ P C +
Sbjct: 572 QIKDEPAGF---------DCEVCG-SPMVIKIGRFGK--FYACSNFPDCRH 610
>gi|452974485|gb|EME74305.1| DNA topoisomerase I [Bacillus sonorensis L12]
Length = 691
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 263/646 (40%), Positives = 360/646 (55%), Gaps = 46/646 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIERNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L L N + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLD----LDLN-SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 DSFKHPRMINMDLVDAQQARRVLDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVE-AVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
EI+EFKP+EYWT+E + L KE+ F R + + S + K I
Sbjct: 180 KEINEFKPEEYWTIEGSFLKGKETFEASFFGI----------RGEKHPLKSEDDVKQILS 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+I F V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 QIKGNKFAVTKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS+ A +E S I E YG + RK KK +NAQ+AHEAI
Sbjct: 290 EGTVGLITYMRTDSTRISNTAQEEAASFIGENYGKEFLGSK--RKPAKKNENAQDAHEAI 347
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT + R PA L +L D L+LY LIW R +A QM PAT+ + VD+ N + FR++
Sbjct: 348 RPTSVLRKPADLKAVLGRDQLRLYKLIWERFVASQMAPATLDTMSVDLEN--NGLTFRAN 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+V+F GF Y E +++ E +L L GD + ++E +QH TQ
Sbjct: 406 GSKVKFSGFMKVY----------VEGKDDQMEEKNKMLPDLTEGDTVLSKDIEPEQHFTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G +V +
Sbjct: 456 PPPRYTEARLVKTLEELGIGRPSTYAPTLDTIQKRGYVALDNKRFLPTELGEIVLELIME 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F E+ + FTA ME ELD+V G +W ++ ++ F + + E +++
Sbjct: 516 FFPEIINVEFTAKMEKELDDVEDGNIQWVQIIDSFYKDFEK--------RVEKAEAEMQE 567
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +A + C CG +++K+ R+G F+ C+ P C
Sbjct: 568 VEIEPEYAGV-----DCENCGH-PMVYKMGRYGK--FMACSNFPDC 605
>gi|193214152|ref|YP_001995351.1| DNA topoisomerase I [Chloroherpeton thalassium ATCC 35110]
gi|193087629|gb|ACF12904.1| DNA topoisomerase I [Chloroherpeton thalassium ATCC 35110]
Length = 803
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/672 (37%), Positives = 381/672 (56%), Gaps = 42/672 (6%)
Query: 334 VPRGQNTQNPLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRP 393
+P ++T + GK +V+VES +KAK I YLG + V S GH++DL + +
Sbjct: 1 MPAKKSTTGNVGSAKGKKLVIVESPSKAKTINKYLGKDFAVYASVGHIKDLPKKEIGLDF 60
Query: 394 DDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHE 453
+ + +EV ++ +K A+ +++A+DPDREGEAIAWHI +
Sbjct: 61 EHHYEPRYEVIEGKEKVVREMKKLAGEADEIMIATDPDREGEAIAWHIANEVSGAKK--- 117
Query: 454 NITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGC 513
+ RV+F+EIT ++K A+Q R+ID +LV++ AR+A+D ++G+ ISP LW +
Sbjct: 118 --PIRRVLFNEITARAVKEAIQETRDIDYSLVRSQQARQAMDKIVGYRISPFLWDTVLRG 175
Query: 514 QSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKR 573
SAGRVQS AL LIC+RE EID F+ +EYW++ A + F A L K
Sbjct: 176 LSAGRVQSVALRLICEREAEIDAFETKEYWSILADFTTESGEK-----FTAKLVKQNGK- 229
Query: 574 LNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSAT 633
+ I + EAK + +N+ + + + +R R P P+ TS LQQ A+N+L + +
Sbjct: 230 --DIEIPNEAEAKRLLDLLNARLYAISEIRRRKTKRNPPAPFTTSLLQQSASNRLGYGSK 287
Query: 634 YTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGP 693
TM LAQ+LYEG+++ A GLITYMRTD IS +A +E R I + +G + PE+ P
Sbjct: 288 KTMSLAQQLYEGIEIGSEGAVGLITYMRTDSKRISQDAQEEARKFIQQAFGEDYTPEK-P 346
Query: 694 RKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQ 753
++Y K + AQ+AHEAIRPT + R P+ L+ L +D L+LY LIW R +A QM PA + Q
Sbjct: 347 KQY-KTSEKAQDAHEAIRPTSVFRKPSDLAPFLSKDQLRLYELIWKRFVASQMSPAELEQ 405
Query: 754 IQVDIGNADESIVFRSSCSRVEFLGFQAAYED---VDAGAIRYKENEENDRHEAFAILNS 810
VDI + ++ +FR+S S V F GF + D +D + + E ++ + +
Sbjct: 406 TGVDISDHEKEFIFRASGSVVLFDGFLKIFGDQRELDYEERKSTKEEASEEDAPTKLPKN 465
Query: 811 LKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTV 870
LK + L L ++ QH T+PPARYSE SLVK+L+ GIGRPSTYAS + L DR YV +
Sbjct: 466 LKEKESLTLDALKENQHFTKPPARYSEASLVKELDNYGIGRPSTYASIISTLLDRKYVEL 525
Query: 871 KSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFS 930
+ R L P G+ VS L F E+ + +FTA ME LD V+AG +++ LL +++
Sbjct: 526 RQRRLNPTELGKDVSRILIANFPELFNVTFTAGMENNLDKVAAGDDDYESLLDNFY---- 581
Query: 931 SYCTCAQSLHIHQVEKMLEKTFG-DSLFASLPNKDRS--CPVCGEGTLIFKVSRFGAGYF 987
K LE+T G LP + + C CGEG ++ K ++ +G F
Sbjct: 582 ---------------KPLEETLGVRKANPILPQNENAEVCDKCGEGRMVVKWTK--SGKF 624
Query: 988 IGCNQHPRCNYI 999
+GC+++P+C I
Sbjct: 625 LGCSRYPKCKNI 636
>gi|325570945|ref|ZP_08146564.1| DNA topoisomerase TopA [Enterococcus casseliflavus ATCC 12755]
gi|325156271|gb|EGC68455.1| DNA topoisomerase TopA [Enterococcus casseliflavus ATCC 12755]
Length = 692
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/648 (39%), Positives = 363/648 (56%), Gaps = 46/648 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK I+ YLG Y+V+ S GH+RDL + ++D+ +
Sbjct: 4 KYLVIVESQAKAKTIEKYLGRNYKVVASVGHIRDLPKSKMGIDVENDYEPHYISIRGKGD 63
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+KS++ A AE + LASDPDREGEAIAWH+ +L D +N RVVF+EIT+ +
Sbjct: 64 VIKSLRSAAKKAEKVYLASDPDREGEAIAWHLAFLLGL-DLKDKN----RVVFNEITKDA 118
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A + R ID +LV A ARR LD L+G+++SP+LWRK+ SAGRVQS AL +I D
Sbjct: 119 VKAAFKEPRTIDVDLVDAQQARRILDRLVGYSLSPILWRKVKKGLSAGRVQSVALKIIID 178
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI +F P+EYW+++ K F L + K N SI K+I
Sbjct: 179 REKEIRDFVPEEYWSIDGNFKKATKKFKANF---WGLDGKKKKLPNAESI------KEIT 229
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+++S FQV K K+ R P+ TS+LQQ+AA KLNF TM +AQ+LYEG+ L
Sbjct: 230 DRLSSKEFQVTKVEKKERKRNPAAPFTTSSLQQEAARKLNFRTRKTMMVAQQLYEGIALG 289
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E I YGS + G ++ + AQ+AHEA
Sbjct: 290 KQGTVGLITYMRTDSTRIADTAKGEAAEFIESTYGSEFSAHGGKKR--ANAQGAQDAHEA 347
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
+RPT + R P + LD+D LKLY LIWSR +A QM PA + ++V + ++F +
Sbjct: 348 VRPTSVMRTPEAMEKFLDKDQLKLYRLIWSRFVASQMTPAILDTMKVTLDQ--NGVIFIA 405
Query: 770 SCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ S+++F GF Y E D G KE++EN IL L GD + +E KQH
Sbjct: 406 NGSKIKFKGFMQVYVEGRDDG----KEDKEN-------ILPELVEGDVVQSVSIEPKQHF 454
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPPARYSE +L+K LEE G+GRPSTYA TL+ +Q R YV + + P G +V++ +
Sbjct: 455 TQPPARYSEATLIKTLEENGVGRPSTYAPTLETIQRRYYVKLTQKRFEPTELGEIVNSLI 514
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F ++ D FTA+ME LD++ AG EW ++ ++ F T A+ I +++
Sbjct: 515 EEFFPQIVDMHFTAEMENSLDSIEAGKEEWVKVVDQFYRPFEKELTTAEE-SIEKIQIKD 573
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E D C +CG ++ K+ R+G F C+ P C
Sbjct: 574 EPAGFD------------CDLCGH-PMVIKLGRYGK--FYACSNFPDC 606
>gi|420185446|ref|ZP_14691538.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM040]
gi|394254432|gb|EJD99401.1| DNA topoisomerase I [Staphylococcus epidermidis NIHLM040]
Length = 689
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 252/646 (39%), Positives = 362/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKHAKKAKKIFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KDSFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW++E K+S F A H+++K + + + + I +
Sbjct: 179 ENEIRNFKPEEYWSIEGEFRYKKS------KFTAKFLHYKNK---PYKLNNKDDVQRITE 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+N F++ +++ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ALNGDQFEITNVNRKEKTRYPAHPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISTSAKSEAQQYITDKYGEQYVSQ---RKSSGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM A + + +D+ D I FR++
Sbjct: 346 RPTSTMRTPDDMKAFLTRDQHRLYKLIWERFVASQMASAILDTVALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++END+ L L GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKENDKENK---LPQLDKGDKVTATKIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFIPTELGEIVYEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ D+++ F A+S + ++E E
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDMNWRKVIGDFYNSFKQDVERAES-EMEKIEIKDEP 572
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 573 AGED------------CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|116747662|ref|YP_844349.1| DNA topoisomerase I [Syntrophobacter fumaroxidans MPOB]
gi|116696726|gb|ABK15914.1| DNA topoisomerase I [Syntrophobacter fumaroxidans MPOB]
Length = 767
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/653 (39%), Positives = 362/653 (55%), Gaps = 40/653 (6%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
KS+++VES TKAK + YLG + V S GHV+DL + + DF ++V
Sbjct: 3 KSLLIVESPTKAKTLGRYLGKDFIVKASVGHVKDLPKNRLGINLEKDFQPEYQVIRGKKK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ + A + + + L DPDREGEAIAWHI E + D V RV+F+E+T +
Sbjct: 63 VISELHEAAAKSGAIFLGPDPDREGEAIAWHIAEEIGATDK-----PVYRVLFYELTRKA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ AL ++ L +A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LIC
Sbjct: 118 IQEALAKPDRLNRELYEAQQARRILDRLVGYMISPILWQKVKRGLSAGRVQSVALRLICA 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFS----FPAHLTHFQSKRLNQLSIGSHTEA 585
RE EI +F +EYWT+ A+L + S S F A L K+ +I + EA
Sbjct: 178 REKEIRDFDSREYWTITALLGTQASADAPAKSASRRFKAELFRCGKKKC---TISTGEEA 234
Query: 586 KDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
+++ ++ +++V K +R R P+ITSTLQQ+AA KL+FSA TM +AQ+LYEG
Sbjct: 235 RELVDRLRPLDYRVSKVERRKKKRHPAPPFITSTLQQEAARKLHFSARQTMNVAQRLYEG 294
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
++L A GLITYMRTD +S +A + +R I + + P + P Y K AQ
Sbjct: 295 LELGKEGAVGLITYMRTDSTRLSADAVQAVRDYIAGHWDKAYLPAK-PAAYKSKA-GAQG 352
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEAIRPTD+ R P ++G L ++ LKLY+LIW R ACQM PA + Q VDI D
Sbjct: 353 AHEAIRPTDVNRTPETVAGFLTKEQLKLYTLIWKRFTACQMAPAVLDQTSVDIAAGD--Y 410
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
V R+S S VEF GF Y + +EN + D E +L LK G+ L L +++
Sbjct: 411 VLRASGSIVEFPGFMTLY-------VEGRENGDED-SETEGLLPELKEGEVLRLEDLKAD 462
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH TQPP RY+E SL+K+LE+LGIGRPSTYA+ L + DR Y V+ + L+P G ++
Sbjct: 463 QHFTQPPPRYTEASLIKELEDLGIGRPSTYATILSTILDREYAVVRKKSLFPSELGWLID 522
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
+ F V D FTA ME LD + G ++ LL +++ +FS A++ ++
Sbjct: 523 GLMVENFPSVVDVDFTAKMEKSLDEIEQGQHPYRNLLAEFYEQFSKTLESARTNMVN--- 579
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
L A D CP CG L + SR G F+ C+ +P C +
Sbjct: 580 ----------LKAVGRRTDLQCPQCGL-PLHIRWSRNGP--FLACSGYPDCRF 619
>gi|400290287|ref|ZP_10792314.1| DNA topoisomerase I [Streptococcus ratti FA-1 = DSM 20564]
gi|399921078|gb|EJN93895.1| DNA topoisomerase I [Streptococcus ratti FA-1 = DSM 20564]
Length = 704
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 250/651 (38%), Positives = 365/651 (56%), Gaps = 57/651 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D+++ +
Sbjct: 21 KNLVIVESPAKAKTIEKYLGRSYKVVASVGHIRDLKKSSMSIDFDNNYEPQYINIRGKGP 80
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ S+K A+ + LASDPDREGEAI+WH+ +L D +N RVVF+EIT+ +
Sbjct: 81 LINSLKKEAKNAKQVFLASDPDREGEAISWHLAHILDL-DPKGKN----RVVFNEITKDA 135
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A R+ID NLV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI D
Sbjct: 136 VKNAFVEPRQIDMNLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIID 195
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI FKP+EYW+++ K F A K+ + + ++ + K++
Sbjct: 196 RENEIKAFKPEEYWSIDGFFKKGSK------KFQASFYGLDGKK---VKLKTNADVKEVL 246
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I S F V K K+ R P PY TS+LQQDAANK+NF TM +AQ+LYEG++L
Sbjct: 247 ARIKSDEFLVSKVEKKERKRNAPLPYTTSSLQQDAANKINFRTRKTMMVAQQLYEGIRLG 306
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEA 706
GLITYMRTD IS A + + I ER+G +A K+ +V+N AQ+A
Sbjct: 307 SSGQQGLITYMRTDSTRISPLAQNDAANFISERFGDKYA------KHGNRVRNASGAQDA 360
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP+++ P ++ LD+D LKLY+LIW+R +A QM A ++V++G +
Sbjct: 361 HEAIRPSNVNNTPESIAKYLDKDQLKLYTLIWNRFVASQMAAAIFDTMKVNLGQ--NGVR 418
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
F ++ S+V+F G+ A Y D D +L + GD + +Q
Sbjct: 419 FTANGSQVKFDGYLAVYNDSDKN----------------KMLPDMAEGDAVKKVSTNPEQ 462
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARYSE +L+K LEE G+GRPSTYA TL+ +Q R YV + ++ P G +V+
Sbjct: 463 HFTQPPARYSEATLIKTLEENGVGRPSTYAPTLETIQKRYYVKLAAKRFEPTELGEIVNG 522
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ +F ++ D FTA+ME +LD V G +W+ ++ ++ F A++ I +V+
Sbjct: 523 LILEFFPDIVDVKFTAEMEGKLDQVEEGQEQWQQVIDSFYKPFEKELVKAEA-EIEKVQI 581
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
E D C VCG ++ K+ R+G F C+ P C+
Sbjct: 582 KDEPAGFD------------CDVCGH-PMVIKLGRYGK--FYACSNFPECH 617
>gi|421270685|ref|ZP_15721540.1| DNA topoisomerase I [Streptococcus pneumoniae SPAR48]
gi|395867814|gb|EJG78934.1| DNA topoisomerase I [Streptococcus pneumoniae SPAR48]
Length = 695
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/652 (39%), Positives = 369/652 (56%), Gaps = 58/652 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 14 KYLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGP 73
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ +
Sbjct: 74 LINDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDA 128
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI D
Sbjct: 129 VKNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIID 188
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 189 RENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVL 239
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 240 SRLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIG 299
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEA 706
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+A
Sbjct: 300 SGV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDA 352
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + +
Sbjct: 353 HEAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQ 410
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
F ++ S+V+F G+ A Y D D +L + GD + + +Q
Sbjct: 411 FAANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQ 454
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 455 HFTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNK 514
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 515 LIVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEE 566
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 567 EMEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|16078675|ref|NP_389494.1| DNA topoisomerase I [Bacillus subtilis subsp. subtilis str. 168]
gi|221309487|ref|ZP_03591334.1| DNA topoisomerase I [Bacillus subtilis subsp. subtilis str. 168]
gi|221313812|ref|ZP_03595617.1| DNA topoisomerase I [Bacillus subtilis subsp. subtilis str. NCIB
3610]
gi|221318736|ref|ZP_03600030.1| DNA topoisomerase I [Bacillus subtilis subsp. subtilis str. JH642]
gi|221323007|ref|ZP_03604301.1| DNA topoisomerase I [Bacillus subtilis subsp. subtilis str. SMY]
gi|321315378|ref|YP_004207665.1| DNA topoisomerase I [Bacillus subtilis BSn5]
gi|402775857|ref|YP_006629801.1| DNA topoisomerase I [Bacillus subtilis QB928]
gi|452914610|ref|ZP_21963237.1| DNA topoisomerase I [Bacillus subtilis MB73/2]
gi|730965|sp|P39814.1|TOP1_BACSU RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase I;
AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName: Full=Untwisting
enzyme
gi|520753|gb|AAA22763.1| DNA topoisomerase I [Bacillus subtilis]
gi|2462970|emb|CAA04422.1| DNA Topoisomerase I [Bacillus subtilis subsp. subtilis str. 168]
gi|2633984|emb|CAB13485.1| DNA topoisomerase I [Bacillus subtilis subsp. subtilis str. 168]
gi|320021652|gb|ADV96638.1| DNA topoisomerase I [Bacillus subtilis BSn5]
gi|402481039|gb|AFQ57548.1| DNA topoisomerase I [Bacillus subtilis QB928]
gi|407959018|dbj|BAM52258.1| DNA topoisomerase I [Synechocystis sp. PCC 6803]
gi|407964595|dbj|BAM57834.1| DNA topoisomerase I [Bacillus subtilis BEST7003]
gi|452117030|gb|EME07425.1| DNA topoisomerase I [Bacillus subtilis MB73/2]
Length = 691
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 266/677 (39%), Positives = 372/677 (54%), Gaps = 58/677 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L L N + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLD----LDLN-SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++FKP+EYWT++ K + +TF F K +L + S + K+I +
Sbjct: 180 KEINDFKPEEYWTIDGTFLKGQ----ETFE-----ASFFGKNGKKLPLNSEADVKEILSQ 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LKGNQYTVEKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGRE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A E + I + YG G RK KK +NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISNTAVDEAAAFIDQTYGKEFLG--GKRKPAKKNENAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R P+ L +L D ++LY LIW R +A QM PA + + VD+ N + FR++
Sbjct: 349 PTSVLRKPSELKAVLGRDQMRLYKLIWERFVASQMAPAVLDTMSVDLTN--NGLTFRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y + + EE DR +L L+ GD + ++E +QH TQP
Sbjct: 407 SKVKFSGFMKVYVEGKDDQM-----EEKDR-----MLPDLQEGDTVLSKDIEPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEE GIGRPSTYA TL +Q R YV + ++ P G++V + +
Sbjct: 457 PPRYTEARLVKTLEERGIGRPSTYAPTLDTIQRRGYVALDNKRFVPTELGQIVLDLIMEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LD+V G TEW ++ ++++ F A+S + +VE E
Sbjct: 517 FPEIINVEFTAKMERDLDHVEEGNTEWVKIIDNFYTDFEKRVKKAES-EMKEVEIEPEYA 575
Query: 952 FGDSLFASLPNKDR----------------------------SCPVCGEGTLIFKVSRFG 983
D S P + CP CGEG ++ + S+
Sbjct: 576 GEDCELCSSPMVYKMGRYGKFLACSNFPDCRNTKPIVKQIGVKCPSCGEGNIVERKSK-K 634
Query: 984 AGYFIGCNQHPRCNYIA 1000
F GC+++P C +++
Sbjct: 635 KRVFYGCDRYPDCEFVS 651
>gi|342163903|ref|YP_004768542.1| DNA topoisomerase I [Streptococcus pseudopneumoniae IS7493]
gi|341933785|gb|AEL10682.1| DNA topoisomerase I [Streptococcus pseudopneumoniae IS7493]
Length = 695
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++A+ K T F A K+ L + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTIDAIFKK------GTKQFQASFYGVDGKK---LKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEAAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|384175353|ref|YP_005556738.1| DNA topoisomerase I [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349594577|gb|AEP90764.1| DNA topoisomerase I [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 693
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 266/677 (39%), Positives = 372/677 (54%), Gaps = 58/677 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 7 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 66
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L L N + RVVF+EIT+ +IK
Sbjct: 67 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLD----LDLN-SDCRVVFNEITKDAIK 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 122 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++FKP+EYWT++ K + +TF F K +L + S + K+I +
Sbjct: 182 KEINDFKPEEYWTIDGTFLKGQ----ETFE-----ASFFGKNGKKLPLNSEADVKEILSQ 232
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 233 LKGNQYTVEKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGRE 292
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A E + I + YG G RK KK +NAQ+AHEAIR
Sbjct: 293 GTVGLITYMRTDSTRISNTAVDEAAAFIDQTYGKEFLG--GKRKPAKKNENAQDAHEAIR 350
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R P+ L +L D ++LY LIW R +A QM PA + + VD+ N + FR++
Sbjct: 351 PTSVLRKPSELKAVLGRDQMRLYKLIWERFVASQMAPAVLDTMSVDLTN--NGLTFRANG 408
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y + + EE DR +L L+ GD + ++E +QH TQP
Sbjct: 409 SKVKFSGFMKVYVEGKDDQM-----EEKDR-----MLPDLQEGDTVLSKDIEPEQHFTQP 458
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEE GIGRPSTYA TL +Q R YV + ++ P G++V + +
Sbjct: 459 PPRYTEARLVKTLEERGIGRPSTYAPTLDTIQRRGYVALDNKRFVPTELGQIVLDLIMEF 518
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LD+V G TEW ++ ++++ F A+S + +VE E
Sbjct: 519 FPEIINVEFTAKMERDLDHVEEGNTEWVKIIDNFYTDFEKRVKKAES-EMKEVEIEPEYA 577
Query: 952 FGDSLFASLPNKDR----------------------------SCPVCGEGTLIFKVSRFG 983
D S P + CP CGEG ++ + S+
Sbjct: 578 GEDCELCSSPMVYKMGRYGKFLACSNFPDCRNTKPIVKQIGVKCPSCGEGNIVERKSK-K 636
Query: 984 AGYFIGCNQHPRCNYIA 1000
F GC+++P C +++
Sbjct: 637 KRVFYGCDRYPDCEFVS 653
>gi|418223297|ref|ZP_12849938.1| DNA topoisomerase I [Streptococcus pneumoniae 5185-06]
gi|353879423|gb|EHE59249.1| DNA topoisomerase I [Streptococcus pneumoniae 5185-06]
Length = 695
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/650 (39%), Positives = 369/650 (56%), Gaps = 58/650 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ + +
Sbjct: 16 LVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPLI 75
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++K
Sbjct: 76 NDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAVK 130
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 131 NAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDRE 190
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++ +
Sbjct: 191 NEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLSR 241
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ + G
Sbjct: 242 LTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGSG 301
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAHE 708
GLITYMRTD IS A E+ S I +R+GS ++ K+ KVKN AQ+AHE
Sbjct: 302 V-QGLITYMRTDSTRISPVAQNEVASFITDRFGSKYS------KHGSKVKNASGAQDAHE 354
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 355 AIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQFA 412
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 413 ANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQHF 456
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+ +
Sbjct: 457 TQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKLI 516
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+ +
Sbjct: 517 VEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEEM 568
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 569 EKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|332653524|ref|ZP_08419269.1| DNA topoisomerase [Ruminococcaceae bacterium D16]
gi|332518670|gb|EGJ48273.1| DNA topoisomerase [Ruminococcaceae bacterium D16]
Length = 783
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/650 (38%), Positives = 364/650 (56%), Gaps = 46/650 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES +KAK I YLG YEV+ S GHVRDL V + F ++ +
Sbjct: 7 LVIVESPSKAKTIGKYLGSGYEVVASMGHVRDLPKSKLGVDVEHGFQPDYQPIKGKEETI 66
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
++K A + + LA+DPDREGEAI+WH+ E+L D RV F+EIT+ +
Sbjct: 67 TALKKAAKKSGKVYLATDPDREGEAISWHLKELLNIPDE-----KTYRVTFNEITKKVVN 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
++ A R ID NLV A ARR LD ++G+ +SPLLW+K+ SAGRVQS A L+ +RE
Sbjct: 122 ESIAAPRAIDQNLVDAQQARRILDRIVGYELSPLLWKKIRRGLSAGRVQSVATRLVVERE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSK---RLNQLSIGSHTEAKDI 588
EI F+PQEYW+++ L++ +L FQ+ R ++ + S EA+ I
Sbjct: 182 EEIRAFQPQEYWSIQVDLER----------VRPNLGGFQAMFYGREKKMELHSQEEAEAI 231
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
++++A F V K ++ +R P+ TSTLQQ+A+ KLN + TM +AQ+LYEGV +
Sbjct: 232 VAEVSAAPFSVSKVKRQEKLRNPAPPFTTSTLQQEASRKLNMTPARTMSIAQQLYEGVDI 291
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
GLITYMRTD L +S+EA + I RYG + P + +++K +AQ+AHE
Sbjct: 292 TGEGTVGLITYMRTDSLRLSEEAIAAAKGFIETRYGKQYYPPQA--RHYKTKGSAQDAHE 349
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRP+D+ +P + L + KLY LIWSR +ACQM A + ++ +A FR
Sbjct: 350 AIRPSDVNLVPDEIKKDLTSEQYKLYKLIWSRFLACQMASAVYDSVSIEAQSA--GYTFR 407
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+S S ++F GF A YE E ++++ + L LK G+ L L + + +QH
Sbjct: 408 ASHSELKFSGFTAVYE----------EGKDDEDEAPQSPLPDLKEGEDLDLKKADKQQHF 457
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPPARYSE +L++ LEE GIGRPSTYA T+ + +R YV + R L P G +V+ +
Sbjct: 458 TQPPARYSEATLIRALEEKGIGRPSTYAPTISTILNREYVVKEGRALRPTPLGEVVTGLM 517
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
F ++ D +FTA ME ELD V G +WK +L ++ F + +H+ E+ L
Sbjct: 518 KDKFQDIVDPTFTAQMEEELDKVEEGSVDWKKVLSAFYDDFEA--------ELHKAEQEL 569
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+ G+ + + CP CG L+ K RFG F+ C P C++
Sbjct: 570 D---GERIKVPDEVSEEICPQCGR-NLVIKSGRFGR--FLACPGWPECDF 613
>gi|444414802|ref|ZP_21211052.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0199]
gi|444281051|gb|ELU86386.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0199]
Length = 695
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 370/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQIDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E+ S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEVASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|402297435|ref|ZP_10817205.1| DNA topoisomerase I [Bacillus alcalophilus ATCC 27647]
gi|401727357|gb|EJT00548.1| DNA topoisomerase I [Bacillus alcalophilus ATCC 27647]
Length = 690
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 262/678 (38%), Positives = 365/678 (53%), Gaps = 60/678 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG Y V S GHVRDL V +DF + L
Sbjct: 5 LVIVESPAKAKTIGKYLGKKYIVKASMGHVRDLPKSQMGVDVKEDFEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A + + LA+DPDREGEAIAWH+ L + N + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKVKKIYLAADPDREGEAIAWHLAHSL----GIDPN-SDCRVVFNEITKQAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A + R+I+ +LV A ARR LD L+G+NISPLLW+K+ SAGRVQS A+ +I +RE
Sbjct: 120 DAFKTPRKINMDLVDAQQARRILDRLVGYNISPLLWKKVKKGLSAGRVQSVAVKMIIERE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI EFKP+EYW++E +D +F A K+ S+ S E + + +K
Sbjct: 180 KEIQEFKPEEYWSIEG------QFKMDDETFDAKFYGVDGKKK---SLASEEEVQTVLKK 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I F + SK+ R P+ TS+LQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 IKGKEFDISSVSKKERKRNPVAPFTTSSLQQEAARKLNFRARKTMMIAQQLYEGIDLGKE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A E + I + YG +G R KK NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISETAQTESKEFIEKNYGKEFL-RQGKR-VDKKGSNAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + P + L D L+LY LIW R +A +M PA + + VD+ N + ++FR++
Sbjct: 349 PTSVFYEPKDVKAYLSRDQLRLYKLIWERLVASEMAPAVMDTMSVDLTN--QGVIFRATG 406
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+++F GF Y E D G +E DR +L L+ G + ++E QH TQ
Sbjct: 407 SKLKFPGFMKVYIEGNDDG------KKEEDR-----LLPDLEEGGVVSKEDIEPHQHFTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK +EELGIGRPSTYA TL +Q R YV ++ + P G +V +
Sbjct: 456 PPPRYTEARLVKTMEELGIGRPSTYAPTLDTIQRRGYVALEEKRFIPTELGEIVLHLIVE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE----- 945
+F E+ D FTA MET+LD++ G W ++ D++ F A+ + +VE
Sbjct: 516 FFPEILDVEFTAKMETDLDSIEEGNHRWVQIIDDFYQGFEKRLLVAEE-EMKEVEIKDEP 574
Query: 946 --KMLEKTFGDSLF---------------------ASLPNKDRSCPVCGEGTLIFKVSRF 982
+ EK D ++ A + +CP C EG ++ + S+
Sbjct: 575 AGETCEKCGHDMVYKMGRYGKFMACSNFPDCRNTKAIVKEIGVTCPTCHEGQIVERKSK- 633
Query: 983 GAGYFIGCNQHPRCNYIA 1000
F GCN++P C +I+
Sbjct: 634 KKRMFYGCNRYPECEFIS 651
>gi|419482295|ref|ZP_14022086.1| DNA topoisomerase I [Streptococcus pneumoniae GA40563]
gi|379579835|gb|EHZ44732.1| DNA topoisomerase I [Streptococcus pneumoniae GA40563]
Length = 695
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 369/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNNEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|430758965|ref|YP_007209686.1| DNA topoisomerase I [Bacillus subtilis subsp. subtilis str. BSP1]
gi|430023485|gb|AGA24091.1| DNA topoisomerase I [Bacillus subtilis subsp. subtilis str. BSP1]
Length = 696
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 266/677 (39%), Positives = 372/677 (54%), Gaps = 58/677 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 10 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 69
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L L N + RVVF+EIT+ +IK
Sbjct: 70 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLD----LDLN-SDCRVVFNEITKDAIK 124
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 125 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 184
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++FKP+EYWT++ K + +TF F K +L + S + K+I +
Sbjct: 185 KEINDFKPEEYWTIDGTFLKGQ----ETFE-----ASFFGKNGKKLPLNSEADVKEILSQ 235
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 236 LKGNQYTVEKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGRE 295
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A E + I + YG G RK KK +NAQ+AHEAIR
Sbjct: 296 GTVGLITYMRTDSTRISNTAVDEAAAFIDQTYGKEFLG--GKRKPAKKNENAQDAHEAIR 353
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R P+ L +L D ++LY LIW R +A QM PA + + VD+ N + FR++
Sbjct: 354 PTSVLRKPSELKAVLGRDQMRLYKLIWERFVASQMAPAVLDTMSVDLTN--NGLTFRANG 411
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y + + EE DR +L L+ GD + ++E +QH TQP
Sbjct: 412 SKVKFSGFMKVYVEGKDDQM-----EEKDR-----MLPDLQEGDTVLSKDIEPEQHFTQP 461
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEE GIGRPSTYA TL +Q R YV + ++ P G++V + +
Sbjct: 462 PPRYTEARLVKTLEERGIGRPSTYAPTLDTIQRRGYVALDNKRFVPTELGQIVLDLIMEF 521
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LD+V G TEW ++ ++++ F A+S + +VE E
Sbjct: 522 FPEIINVEFTAKMERDLDHVEEGNTEWVKIIDNFYTDFEKRVKKAES-EMKEVEIEPEYA 580
Query: 952 FGDSLFASLPNKDR----------------------------SCPVCGEGTLIFKVSRFG 983
D S P + CP CGEG ++ + S+
Sbjct: 581 GEDCELCSSPMVYKMGRYGKFLACSNFPDCRNTKPIVKQIGVKCPSCGEGNIVERKSK-K 639
Query: 984 AGYFIGCNQHPRCNYIA 1000
F GC+++P C +++
Sbjct: 640 KRVFYGCDRYPDCEFVS 656
>gi|383939625|ref|ZP_09992779.1| DNA topoisomerase I [Streptococcus pseudopneumoniae SK674]
gi|418972594|ref|ZP_13520685.1| DNA topoisomerase I [Streptococcus pseudopneumoniae ATCC BAA-960]
gi|383351718|gb|EID29491.1| DNA topoisomerase I [Streptococcus pseudopneumoniae ATCC BAA-960]
gi|383712461|gb|EID69513.1| DNA topoisomerase I [Streptococcus pseudopneumoniae SK674]
Length = 695
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++AV K T F A K+ L + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTIDAVFKK------GTKQFQASFYGVDGKK---LKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|417925904|ref|ZP_12569317.1| DNA topoisomerase I [Finegoldia magna SY403409CC001050417]
gi|341590506|gb|EGS33744.1| DNA topoisomerase I [Finegoldia magna SY403409CC001050417]
Length = 688
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 266/685 (38%), Positives = 370/685 (54%), Gaps = 60/685 (8%)
Query: 348 SGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAA 407
+ K +VVVES TKAK IQ LG Y+V+ + GH+RDL + D+DF +
Sbjct: 2 ANKKLVVVESPTKAKTIQKMLGSGYKVVATIGHLRDLPKSKLGIDIDNDFEPQYINVRGK 61
Query: 408 WTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITE 467
+ ++K ++ + LA+DPDREGEAI+WH+ +L + EN RV F EIT+
Sbjct: 62 ANVINALKKDYKNSQKIFLATDPDREGEAISWHLCYLLGI-NPKEEN----RVKFQEITK 116
Query: 468 ASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLI 527
S+K A++ ID LV A ARR LD ++G++ISPLLW+K+ SAGRVQS AL LI
Sbjct: 117 DSVKEAIKKPEAIDLKLVDAQQARRVLDRIVGYSISPLLWKKVKSGLSAGRVQSVALRLI 176
Query: 528 CDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 587
C+RE EI EF+P+EYW++ A L K D F + L + +S + N+++I + EA
Sbjct: 177 CEREKEIREFEPEEYWSIHANLSK------DKLDFDSELYYSKSDKSNKINIKNKDEADK 230
Query: 588 IEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
I + S F V ++ RK P+ TSTLQQ+A KL F + TM++AQ+LYEG+
Sbjct: 231 ILNDL-SDKFVVDSIKQQKKARKPYAPFTTSTLQQEAYKKLYFQTSKTMRIAQQLYEGIS 289
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
L + GLITYMRTD IS + +I E YG +A Y KK K +Q+AH
Sbjct: 290 LGSEGSVGLITYMRTDSTRISQVCVNDCLDIINELYGKQYATR--GYDYSKKKKGSQDAH 347
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
E IRP+ ++R P + L ED KLY LIW RT+A QM+ A +D N F
Sbjct: 348 EGIRPSSVKRRPNEIKKYLTEDQYKLYKLIWERTVASQMKDARYLSTSIDFDN--NGYTF 405
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
RS+ + V F GF Y ++ K++E L LK +P+ E+E KQH
Sbjct: 406 RSNGNVVIFDGFTRVY------SLNTKDSE----------LPELKDREPISSNEIEPKQH 449
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+P RY+E SLVK LEE GIGRPSTYAS + + RNYV +K + Y G V F
Sbjct: 450 FTKPKPRYTEASLVKTLEEDGIGRPSTYASIISSILSRNYVELKEKKFYTTEIGEKVCEF 509
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF + + FTA+ME ELDN++ EWK ++ D+++ F+ A+ + K+
Sbjct: 510 VVKYFDSIINEKFTAEMENELDNIAENDVEWKKVIRDFYNGFNEDLVNAK--NAQDKFKV 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
++ G R CP CG L+ K R G FIGC+ P C Y
Sbjct: 568 KDEPIG-----------RKCPECG-NDLVIKHGRNGK--FIGCSAFPECKYT-------- 605
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASK 1032
+T+ ++T V PK GH K
Sbjct: 606 ---ETIVKDTKVKCPKC-GHRIIEK 626
>gi|194014957|ref|ZP_03053574.1| DNA topoisomerase I [Bacillus pumilus ATCC 7061]
gi|194013983|gb|EDW23548.1| DNA topoisomerase I [Bacillus pumilus ATCC 7061]
Length = 691
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/645 (39%), Positives = 360/645 (55%), Gaps = 44/645 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GH+RDL V + DF + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHIRDLPKSQLGVDTEHDFEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A + + LA+DPDREGEAIAWH+ L + + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKVKKVYLAADPDREGEAIAWHLAHSLDLDLS-----SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 DSFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+EFKP+EYWT++ K + SF A K+ + + + K+I K
Sbjct: 180 NEINEFKPEEYWTIDGTFLKGKE------SFEASFFGVNGKKH---PLKTKEDVKEILSK 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + F V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LKGSKFSVEKVTKKERKRNPAVPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGKE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A +E+ + I + YG + ++ KK +NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISNTAIEEVSAFIDQTYGKNFL--NTTKRTAKKNENAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT R PA + +L D L+LY LIW R +A QM PA + + VD+ N + FR++
Sbjct: 349 PTSTLRKPADVKHVLSRDQLRLYKLIWERFVASQMAPAVLDTMSVDLDN--NGLTFRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y E +++ E +L LK GD + ++E +QH TQP
Sbjct: 407 SKVKFPGFMKVY----------VEGKDDQLEEKDKMLPDLKEGDTVLSKDIEPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G +V + +
Sbjct: 457 PPRYTEARLVKTLEELGIGRPSTYAPTLDTIQKRGYVALDNKRFIPTELGEIVLNLIIEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME ELD+V G EW ++ ++ F+ + + E +++
Sbjct: 517 FPEIINVEFTAKMEKELDSVEEGTIEWVRIIDSFYQDFAK--------RVEKAEAEMQEV 568
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +A + C CG +++K+ R+G F+ C+ P C
Sbjct: 569 EIEPEYAGV-----DCEECGH-PMVYKMGRYGK--FMACSNFPDC 605
>gi|254828638|ref|ZP_05233325.1| topA [Listeria monocytogenes FSL N3-165]
gi|254911950|ref|ZP_05261962.1| DNA topoisomerase I [Listeria monocytogenes J2818]
gi|254936276|ref|ZP_05267973.1| topA [Listeria monocytogenes F6900]
gi|386046926|ref|YP_005965258.1| DNA topoisomerase I [Listeria monocytogenes J0161]
gi|386053528|ref|YP_005971086.1| DNA topoisomerase I [Listeria monocytogenes Finland 1998]
gi|404413351|ref|YP_006698938.1| DNA topoisomerase I [Listeria monocytogenes SLCC7179]
gi|258601037|gb|EEW14362.1| topA [Listeria monocytogenes FSL N3-165]
gi|258608865|gb|EEW21473.1| topA [Listeria monocytogenes F6900]
gi|293589911|gb|EFF98245.1| DNA topoisomerase I [Listeria monocytogenes J2818]
gi|345533917|gb|AEO03358.1| DNA topoisomerase I [Listeria monocytogenes J0161]
gi|346646179|gb|AEO38804.1| DNA topoisomerase I [Listeria monocytogenes Finland 1998]
gi|404239050|emb|CBY60451.1| DNA topoisomerase I [Listeria monocytogenes SLCC7179]
gi|441470945|emb|CCQ20700.1| DNA topoisomerase 1 [Listeria monocytogenes]
gi|441474072|emb|CCQ23826.1| DNA topoisomerase 1 [Listeria monocytogenes N53-1]
Length = 692
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/647 (39%), Positives = 362/647 (55%), Gaps = 48/647 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++V S GHVRDL V ++D+ + L
Sbjct: 5 LVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTENDYEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ--QQDALHENITVARVVFHEITEAS 469
K +K A A+ + LA+DPDREGEAIAWH+ L+ Q D L RVVF+EIT+ +
Sbjct: 65 KELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQSDKL-------RVVFNEITKEA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K + + R+ID +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL +I D
Sbjct: 118 VKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIID 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FKP+EYWT++ K + F A+ K+ + + + K++
Sbjct: 178 REKEINNFKPEEYWTIDGNFLKGKK------KFQANFYGLNGKKK---KLSTADDVKEVM 228
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I +F V +K+ +R P+ TS+LQQ+AA KLN+ TM LAQ+LYEG+ L
Sbjct: 229 SAIKGKSFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLG 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E + I E YG + ++ K K AQ+AHEA
Sbjct: 289 KQGTVGLITYMRTDSTRIADSAILEASNYIKETYGPEFS--RNHKRSDKNAKGAQDAHEA 346
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R P + L D L+LY LIW R +A QM PA + ++VD+ N + FR+
Sbjct: 347 IRPTSAMRSPQEVKEYLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDN--NGVNFRA 404
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+++F GF Y + + KEN IL LK GD + +E +QH T
Sbjct: 405 NGSKIKFHGFMKVYVESNDDNTEEKEN----------ILPDLKKGDKVQSESLEQRQHFT 454
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LVK LEE+GIGRPSTY+ TL +Q RNYV++ ++ P G +V+ +
Sbjct: 455 QPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIE 514
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF E+ D FTA+ME+ELD V G EW ++ +++ RF A + + ++E E
Sbjct: 515 EYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKRFEPNVIKADA-EMEKIEIKDE 573
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C +CG +++K+ ++G F+ C++ P C
Sbjct: 574 PAGID------------CDLCG-APMVYKMGKYGK--FLACSRFPDC 605
>gi|340355011|ref|ZP_08677705.1| DNA topoisomerase TopA [Sporosarcina newyorkensis 2681]
gi|339622808|gb|EGQ27321.1| DNA topoisomerase TopA [Sporosarcina newyorkensis 2681]
Length = 691
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 262/677 (38%), Positives = 361/677 (53%), Gaps = 58/677 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GH+RDL V ++++ + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVSASLGHLRDLPRSQMGVDTENNYEPKYITIRGKGPIL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+ +K A+ + LA+DPDREGEAIAWH+ L + RVVF+EIT+ +IK
Sbjct: 65 QELKKEAKKAKKIFLAADPDREGEAIAWHLSHQLGVDIE-----SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 DSFKHPRPINMNLVDAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+P+EYW++ A K + TF F ++ + + + + I
Sbjct: 180 NEINAFEPEEYWSITAQFTKGKK----TFE-----AAFYGDANEKVKLTNQEQVEKIVNS 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + F+V K K+ R P+ TS+LQQ+AA KLNF A TM LAQ+LYEG+ +
Sbjct: 231 LQTDEFEVSKVVKKERKRNPALPFTTSSLQQEAARKLNFRAKKTMMLAQQLYEGIAIGKE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD ISD A E++S I YG K K N Q+AHEA+R
Sbjct: 291 GTVGLITYMRTDSTRISDTAKDEVKSYIHTMYGEEFISSNN--KKTKAKANTQDAHEAVR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT R P + L D L+LY LIW R +A QM PA + + D N D I FR+S
Sbjct: 349 PTSAMRPPEAMKAFLSRDQLRLYKLIWERFVASQMAPAILDTVTADFLNGD--IRFRASG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y + D KEN IL L+ G+ + GEV+ KQH TQP
Sbjct: 407 SQVKFPGFMKVYIEGDDDQQEEKEN----------ILPPLEEGEHVKYGEVDPKQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE LVK LEELGIGRPST+A TL +Q R YVT+ ++ P G +V ++ Y
Sbjct: 457 PPRYSEARLVKTLEELGIGRPSTFAPTLDTIQKRGYVTLDAKRFIPTELGGIVHQAVNQY 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE-- 949
F ++ D FTA ME LDNV G EW+ ++ +++ F + A + + ++E E
Sbjct: 517 FPDIIDIEFTAQMERRLDNVEEGSVEWRKVIDEFYRDFEKHVEVADA-EMEKIEIKDEPA 575
Query: 950 -------------------KTFGDSLFASLPNKDR-------SCPVCGEGTLIFKVSRFG 983
K S F N +CP C EG ++ + S+
Sbjct: 576 GEDCEKCGSPMVFKMGRYGKFMACSNFPDCRNTKAIIKPIGVTCPKCKEGEVVERKSKTK 635
Query: 984 AGYFIGCNQHPRCNYIA 1000
+F GC+Q+P C+Y++
Sbjct: 636 RIFF-GCDQYPECDYVS 651
>gi|126654064|ref|ZP_01725890.1| DNA topoisomerase I [Bacillus sp. B14905]
gi|126589444|gb|EAZ83591.1| DNA topoisomerase I [Bacillus sp. B14905]
Length = 692
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/650 (39%), Positives = 364/650 (56%), Gaps = 53/650 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V +++F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASVGHVRDLPRSQMGVSAENNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV---ARVVFHEITEA 468
+ +K A + + LA+DPDREGEAIAWH+ L NI + RVVF+EIT+
Sbjct: 65 QELKSAAKKVKKVYLAADPDREGEAIAWHLATAL--------NIDINSDCRVVFNEITKD 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I + + R I+ +LV A RR LD L+G+NISP+LW+K+ SAGRVQS AL +I
Sbjct: 117 AIIESFKNPRPINMDLVDAQQTRRILDRLVGYNISPILWKKVKKGLSAGRVQSVALRMII 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI F+P+EYWT+E +K + SF A L + K ++ + + + K +
Sbjct: 177 DRENEIKNFQPEEYWTIEGTFEKGKK------SFDA-LYYGNGK--EKIKLTNEEQVKTV 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ + NF V+ SK+ R + TS+LQQ+AA KLNF A TM LAQ+LYEG+ +
Sbjct: 228 LKGVKGTNFNVVNVSKKERKRNAAPAFTTSSLQQEAARKLNFRAKKTMMLAQQLYEGIDI 287
Query: 649 --PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+GT GLITYMRTD IS+ A E S I +YG + E K KK NAQ+A
Sbjct: 288 GKKEGTV-GLITYMRTDSTRISETAKTEAVSFIESKYGKEYIATE--IKQTKKASNAQDA 344
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT R P L +L D L+LY LIW R +A QM PA + + VD+ N D ++
Sbjct: 345 HEAIRPTSTMRSPEELKAVLSRDQLRLYRLIWERFIASQMAPAILDTVAVDLQNGD--VL 402
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ S+V+F GF Y E ++ E +L ++ GD + E+E KQ
Sbjct: 403 FRANGSQVKFAGFMKLY----------IEGTDDQTEETTKLLPEMEIGDQVKSLEIEPKQ 452
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RYSE LVK +EELGIGRPSTYA TL +Q R YV + ++ P G +V
Sbjct: 453 HFTQPPPRYSEARLVKTMEELGIGRPSTYAPTLDTIQRRGYVVLDAKRFMPTELGEIVHQ 512
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ +F ++ + FTA ME +LD++ G +WK ++ +++ F +H+ ++
Sbjct: 513 LVLEFFPDIINIEFTAQMEQDLDDIEEGSRQWKNIVEEFYKDF--------EVHVKHADE 564
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+EK + P + C +CG +++K+ R+G F+ C+ P C
Sbjct: 565 AMEKV----VIKDEPAGE-DCELCG-SPMVYKLGRYGK--FMACSNFPDC 606
>gi|116516615|ref|YP_816589.1| DNA topoisomerase I [Streptococcus pneumoniae D39]
gi|421234237|ref|ZP_15690857.1| DNA topoisomerase I [Streptococcus pneumoniae 2061617]
gi|421266280|ref|ZP_15717161.1| DNA topoisomerase I [Streptococcus pneumoniae SPAR27]
gi|116077191|gb|ABJ54911.1| DNA topoisomerase I [Streptococcus pneumoniae D39]
gi|395601185|gb|EJG61334.1| DNA topoisomerase I [Streptococcus pneumoniae 2061617]
gi|395867496|gb|EJG78619.1| DNA topoisomerase I [Streptococcus pneumoniae SPAR27]
Length = 695
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 370/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNNEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C++
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCHH 610
>gi|148995127|ref|ZP_01824014.1| DNA topoisomerase I [Streptococcus pneumoniae SP9-BS68]
gi|168489087|ref|ZP_02713286.1| DNA topoisomerase I [Streptococcus pneumoniae SP195]
gi|417679223|ref|ZP_12328620.1| DNA topoisomerase I [Streptococcus pneumoniae GA17570]
gi|418214447|ref|ZP_12841182.1| DNA topoisomerase I [Streptococcus pneumoniae GA54644]
gi|418234459|ref|ZP_12861037.1| DNA topoisomerase I [Streptococcus pneumoniae GA08780]
gi|419484487|ref|ZP_14024263.1| DNA topoisomerase I [Streptococcus pneumoniae GA43257]
gi|419508330|ref|ZP_14047983.1| DNA topoisomerase I [Streptococcus pneumoniae GA49542]
gi|421206724|ref|ZP_15663779.1| DNA topoisomerase I [Streptococcus pneumoniae 2090008]
gi|421220412|ref|ZP_15677256.1| DNA topoisomerase I [Streptococcus pneumoniae 2070425]
gi|421222722|ref|ZP_15679508.1| DNA topoisomerase I [Streptococcus pneumoniae 2070531]
gi|421229898|ref|ZP_15686566.1| DNA topoisomerase I [Streptococcus pneumoniae 2061376]
gi|421279038|ref|ZP_15729845.1| DNA topoisomerase I [Streptococcus pneumoniae GA17301]
gi|421292176|ref|ZP_15742911.1| DNA topoisomerase I [Streptococcus pneumoniae GA56348]
gi|421294132|ref|ZP_15744855.1| DNA topoisomerase I [Streptococcus pneumoniae GA56113]
gi|421301125|ref|ZP_15751795.1| DNA topoisomerase I [Streptococcus pneumoniae GA19998]
gi|147926847|gb|EDK77899.1| DNA topoisomerase I [Streptococcus pneumoniae SP9-BS68]
gi|183572560|gb|EDT93088.1| DNA topoisomerase I [Streptococcus pneumoniae SP195]
gi|332073602|gb|EGI84081.1| DNA topoisomerase I [Streptococcus pneumoniae GA17570]
gi|353871730|gb|EHE51601.1| DNA topoisomerase I [Streptococcus pneumoniae GA54644]
gi|353887750|gb|EHE67527.1| DNA topoisomerase I [Streptococcus pneumoniae GA08780]
gi|379583998|gb|EHZ48875.1| DNA topoisomerase I [Streptococcus pneumoniae GA43257]
gi|379612048|gb|EHZ76770.1| DNA topoisomerase I [Streptococcus pneumoniae GA49542]
gi|395575521|gb|EJG36089.1| DNA topoisomerase I [Streptococcus pneumoniae 2090008]
gi|395587528|gb|EJG47875.1| DNA topoisomerase I [Streptococcus pneumoniae 2070425]
gi|395587784|gb|EJG48126.1| DNA topoisomerase I [Streptococcus pneumoniae 2070531]
gi|395595458|gb|EJG55690.1| DNA topoisomerase I [Streptococcus pneumoniae 2061376]
gi|395879650|gb|EJG90707.1| DNA topoisomerase I [Streptococcus pneumoniae GA17301]
gi|395892304|gb|EJH03295.1| DNA topoisomerase I [Streptococcus pneumoniae GA56348]
gi|395894422|gb|EJH05402.1| DNA topoisomerase I [Streptococcus pneumoniae GA56113]
gi|395898685|gb|EJH09629.1| DNA topoisomerase I [Streptococcus pneumoniae GA19998]
Length = 695
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNNEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|421307577|ref|ZP_15758220.1| DNA topoisomerase I [Streptococcus pneumoniae GA60132]
gi|395907490|gb|EJH18381.1| DNA topoisomerase I [Streptococcus pneumoniae GA60132]
Length = 695
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/651 (39%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ L + S+ E K+I
Sbjct: 190 ENEINAFEPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---LKLTSNDEVKEILS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|421243190|ref|ZP_15699709.1| DNA topoisomerase I [Streptococcus pneumoniae 2081074]
gi|395608778|gb|EJG68870.1| DNA topoisomerase I [Streptococcus pneumoniae 2081074]
Length = 695
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 370/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF+++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFTDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|15903184|ref|NP_358734.1| DNA topoisomerase I [Streptococcus pneumoniae R6]
gi|15458770|gb|AAK99944.1| DNA topoisomerase I [Streptococcus pneumoniae R6]
Length = 701
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 370/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 21 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 80
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 81 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 135
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 136 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 195
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 196 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNNEVKEVLS 246
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 247 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 306
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 307 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 359
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 360 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 417
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 418 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 461
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 462 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 521
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 522 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 573
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C++
Sbjct: 574 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCHH 616
>gi|313681307|ref|YP_004059045.1| DNA topoisomerase i [Sulfuricurvum kujiense DSM 16994]
gi|313154167|gb|ADR32845.1| DNA topoisomerase I [Sulfuricurvum kujiense DSM 16994]
Length = 740
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 247/652 (37%), Positives = 371/652 (56%), Gaps = 52/652 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMV-WEVPSAAWTH 410
+++VES KAK I+ +L YEV+ S GH+RDL ++ DD+ + + + +
Sbjct: 3 LIIVESPAKAKTIKNFLSKDYEVIASKGHIRDLPKNRFGIKIDDEKIIAEYRISEDSTAT 62
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K I+ ++ + +A+D DREGEAI WHI + + + ++ R+VFHEIT+ +I
Sbjct: 63 VKQIQELAKKSDTIYIATDEDREGEAIGWHIAHAIDKDPS-----SLPRIVFHEITKNAI 117
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
AL+ R ID + V A ARR LD ++G+ +SPLL K+ SAGRVQS+ L ++ DR
Sbjct: 118 IHALETPRTIDMDRVNAQQARRLLDRIVGYKLSPLLANKIQKGLSAGRVQSSTLKIVVDR 177
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F P+EYWT++ + K A L +F+++++++L+I + EA I +
Sbjct: 178 EREIRAFIPEEYWTIDTLFKK---------DIEAALVNFENEKIDKLTIKTGDEAARIVE 228
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ +F+V + + P P++TSTLQQ A+++L FS TM +AQ LYEGV+ P+
Sbjct: 229 TLKGESFKVGEIETKERKSSTPPPFMTSTLQQTASSQLGFSPKKTMMVAQALYEGVKTPE 288
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GT+ G+ITYMRTD L+++ EA + R +I RYG + P+E + Y KK K AQEAHEAI
Sbjct: 289 GTS-GVITYMRTDSLNLATEAVEAAREVILTRYGKEYLPKEA-KVYTKKSKGAQEAHEAI 346
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT + P + + L D +KLY LI++R +ACQM A Q + +A FR++
Sbjct: 347 RPTMLGFTPEVAATYLKPDEIKLYRLIYNRFLACQMNDARFEQQSITFESAKAQ--FRAT 404
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++ F GF Y+ +D+ + +L SL TGD + + V +QH T+
Sbjct: 405 GRKLLFDGF-------------YRVTGSDDKDK---LLPSLTTGDSIEIQTVTPEQHFTE 448
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PPARYSE SL+KKLE GIGRPSTYA T+ LQ RNY+ ++ R + P V+ L +
Sbjct: 449 PPARYSEASLIKKLESEGIGRPSTYAPTISTLQARNYIEIEKRAIMPTEIAFTVTEMLEN 508
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F+E+ D SFTA ME LD +S W +L+D++ F +S + V + K
Sbjct: 509 HFNEIVDASFTATMEETLDEISESGKSWHKILLDFYYPFIEKIDAGKS---NIVSLKMAK 565
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKT 1002
G R+CP CG L+ + RFG FI C+ P+C Y +T
Sbjct: 566 PLG-----------RNCPQCG-SELLLRSGRFGE--FIACSGFPKCKYTEQT 603
>gi|418086963|ref|ZP_12724133.1| DNA topoisomerase I [Streptococcus pneumoniae GA47033]
gi|419455644|ref|ZP_13995602.1| DNA topoisomerase I [Streptococcus pneumoniae EU-NP04]
gi|421285429|ref|ZP_15736206.1| DNA topoisomerase I [Streptococcus pneumoniae GA60190]
gi|353759224|gb|EHD39810.1| DNA topoisomerase I [Streptococcus pneumoniae GA47033]
gi|379628778|gb|EHZ93380.1| DNA topoisomerase I [Streptococcus pneumoniae EU-NP04]
gi|395887408|gb|EJG98423.1| DNA topoisomerase I [Streptococcus pneumoniae GA60190]
Length = 695
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/651 (39%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ L + S+ E K++
Sbjct: 190 ENEINAFEPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---LKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEAAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|315613289|ref|ZP_07888198.1| DNA topoisomerase TopA [Streptococcus sanguinis ATCC 49296]
gi|315314524|gb|EFU62567.1| DNA topoisomerase TopA [Streptococcus sanguinis ATCC 49296]
Length = 695
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 370/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ + +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGSL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K++ + ++ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGMNGKKM---KLTTNEEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F V + K+ R P PY TST+Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 HLTSKDFTVDQVDKKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA---QEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKNA Q+AH
Sbjct: 301 GVQ-GLITYMRTDSTRISPVAQNEAASYINDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTGAIFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D + L ++ GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKNKM----------------LPDMEVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ +++ FS A+S ++EK+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDEFYKPFSKEVAKAES----EMEKI 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
K C VCG ++ K+ RFG F C+ P C +
Sbjct: 572 QIKDEPAGF---------DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|299536760|ref|ZP_07050068.1| DNA topoisomerase I [Lysinibacillus fusiformis ZC1]
gi|424737033|ref|ZP_18165489.1| DNA topoisomerase I [Lysinibacillus fusiformis ZB2]
gi|298727772|gb|EFI68339.1| DNA topoisomerase I [Lysinibacillus fusiformis ZC1]
gi|422948865|gb|EKU43241.1| DNA topoisomerase I [Lysinibacillus fusiformis ZB2]
Length = 692
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/647 (39%), Positives = 365/647 (56%), Gaps = 47/647 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V +++F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASVGHVRDLPRSQMGVSAENNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+ +K A + + LA+DPDREGEAIAWH+ L +H + RVVF+EIT+ +I
Sbjct: 65 QELKSAAKKVKKVYLAADPDREGEAIAWHLATALNID--IHSD---CRVVFNEITKDAII 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A RR LD L+G+NISP+LW+K+ SAGRVQS AL +I DRE
Sbjct: 120 ESFKNPRPINMDLVDAQQTRRILDRLVGYNISPILWKKVKKGLSAGRVQSVALRMIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI F+P+EYWT+E +K + SF A L + K +++ + + + K I +
Sbjct: 180 NEIKNFQPEEYWTIEGTFEKGKK------SFDA-LYYGNGK--DKIKLTNEAQVKAILKD 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL--P 649
+ NF V+ +K+ R + TS+LQQ+AA KLNF A TM LAQ+LYEG+ +
Sbjct: 231 VKGTNFDVVNVTKKERKRNAAPAFTTSSLQQEAARKLNFRAKKTMMLAQQLYEGIDIGKK 290
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
+GT GLITYMRTD ISD A E + I +YG + + K KK NAQ+AHEA
Sbjct: 291 EGTV-GLITYMRTDSTRISDTAKAEAVTYIEGKYGKEYIATD--IKQTKKASNAQDAHEA 347
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R P L +L D L+LY LIW R +A QM PA + + VD+ N D ++FR+
Sbjct: 348 IRPTSTMRTPDELKAVLSRDQLRLYRLIWERFIASQMAPAVLDTVAVDLQNGD--VLFRA 405
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+V+F GF Y E ++ E +L ++ GD + E+E KQH T
Sbjct: 406 NGSQVKFAGFMKLY----------IEGTDDQTEETTKLLPEMEIGDQVKSLEIEPKQHFT 455
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RYSE LVK +EELGIGRPSTYA TL +Q R YV + ++ P G +V +
Sbjct: 456 QPPPRYSEARLVKTMEELGIGRPSTYAPTLDTIQRRGYVVLDAKRFMPTELGEIVHQLVL 515
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
+F ++ + FTA ME +LD++ G +WK ++ +++ F +H+ ++ +E
Sbjct: 516 EFFPDIINIEFTAQMEQDLDDIEEGNRQWKKVVEEFYKDF--------EVHVKHADEAME 567
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
K + P + C +CG ++FK+ R+G F+ C+ P C
Sbjct: 568 KV----VIKDEPAGE-DCELCG-SPMVFKLGRYGK--FMACSNFPDC 606
>gi|315648144|ref|ZP_07901245.1| DNA topoisomerase I [Paenibacillus vortex V453]
gi|315276790|gb|EFU40133.1| DNA topoisomerase I [Paenibacillus vortex V453]
Length = 669
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 257/650 (39%), Positives = 360/650 (55%), Gaps = 57/650 (8%)
Query: 379 GHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIA 438
GHVRDL V ++DF+ + + LK +K A + + LA+DPDREGEAIA
Sbjct: 2 GHVRDLPKSQIGVEVENDFNPKYITIRGKGSVLKELKDASKKVKKVYLAADPDREGEAIA 61
Query: 439 WHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLI 498
WH+ L+ D RVVF+EIT+ ++K A + R+I+ +LV A ARR LD L+
Sbjct: 62 WHLAHALELDDTQS-----LRVVFNEITKTAVKDAFKTPRKINMDLVNAQQARRILDRLV 116
Query: 499 GFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLD 558
G+ ISP+LW+K+ SAGRVQS A+ +I DRE EI F P+EYWT+ A L +++
Sbjct: 117 GYKISPILWKKVKKGLSAGRVQSVAVKIILDRENEISAFVPEEYWTITAKL------AVN 170
Query: 559 TFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITS 618
+F A T + + + E +I + I A+FQV + +R R P+ TS
Sbjct: 171 GSAFEAKFTQLNGAKKE---LTNEQEVNEILEAIRDASFQVGEVKERERQRHPSPPFTTS 227
Query: 619 TLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSL 678
+LQQ+AA KL F A TM +AQ+LYEGV+L GLITYMRTD IS A +E +
Sbjct: 228 SLQQEAARKLGFRAAKTMSVAQQLYEGVELGKEGTVGLITYMRTDSTRISGTAQEEAKEY 287
Query: 679 IFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIW 738
I E+YG PE PR+Y KK NAQ+AHEAIRPT I R P + + D L+LY L+W
Sbjct: 288 ITEKYGDSFVPE-SPRQYSKKAANAQDAHEAIRPTSILRDPESMKPFMSRDQLRLYKLVW 346
Query: 739 SRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENE 797
R +A QM A + + VDI A + VFR++ S+V F GF Y E D G
Sbjct: 347 ERFVASQMASAVLDTLSVDI--AANNTVFRATGSKVRFPGFMKVYVEGNDDGTT------ 398
Query: 798 ENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYAS 857
E D++ L L TGD L ++E KQH TQPP RY+E LVK LEELGIGRPSTYA
Sbjct: 399 EEDKY-----LPELHTGDVLEKQDIEPKQHFTQPPPRYTEARLVKTLEELGIGRPSTYAP 453
Query: 858 TLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTE 917
TL+ +Q R YV ++ + P G +V + +F E+ + FTA+ME +LD+V G +
Sbjct: 454 TLETIQKRGYVAIEEKKFMPTELGELVIEQMEQFFPEILNVEFTANMEEDLDHVEEGSED 513
Query: 918 WKGLLVDYWSRFSSYCTCAQSLHIHQV------EKMLEKT----------FGDSLFAS-L 960
W +L +++ F A+ +++ EK FG L S
Sbjct: 514 WVKVLAEFYESFEKRLEVAEEEMKEIEIEDEVSDEICEKCGKPLVYKLGRFGKFLACSGF 573
Query: 961 PN--------KD--RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
P+ KD +CP C EG ++ + S+ G +F GC+++P C++++
Sbjct: 574 PDCRNTKPIVKDIGVACPKCKEGHVVERRSKKGRVFF-GCDRYPECDFVS 622
>gi|225856924|ref|YP_002738435.1| DNA topoisomerase I [Streptococcus pneumoniae P1031]
gi|417696451|ref|ZP_12345630.1| DNA topoisomerase I [Streptococcus pneumoniae GA47368]
gi|418169285|ref|ZP_12805928.1| DNA topoisomerase I [Streptococcus pneumoniae GA19077]
gi|418219001|ref|ZP_12845668.1| DNA topoisomerase I [Streptococcus pneumoniae NP127]
gi|419423083|ref|ZP_13963298.1| DNA topoisomerase I [Streptococcus pneumoniae GA43264]
gi|419460094|ref|ZP_14000023.1| DNA topoisomerase I [Streptococcus pneumoniae GA02270]
gi|419462425|ref|ZP_14002331.1| DNA topoisomerase I [Streptococcus pneumoniae GA02714]
gi|419488427|ref|ZP_14028180.1| DNA topoisomerase I [Streptococcus pneumoniae GA44386]
gi|419525998|ref|ZP_14065560.1| DNA topoisomerase I [Streptococcus pneumoniae GA14373]
gi|421272836|ref|ZP_15723678.1| DNA topoisomerase I [Streptococcus pneumoniae SPAR55]
gi|225726060|gb|ACO21912.1| DNA topoisomerase I [Streptococcus pneumoniae P1031]
gi|332201726|gb|EGJ15796.1| DNA topoisomerase I [Streptococcus pneumoniae GA47368]
gi|353834470|gb|EHE14571.1| DNA topoisomerase I [Streptococcus pneumoniae GA19077]
gi|353875656|gb|EHE55508.1| DNA topoisomerase I [Streptococcus pneumoniae NP127]
gi|379531099|gb|EHY96334.1| DNA topoisomerase I [Streptococcus pneumoniae GA02270]
gi|379531896|gb|EHY97129.1| DNA topoisomerase I [Streptococcus pneumoniae GA02714]
gi|379558258|gb|EHZ23294.1| DNA topoisomerase I [Streptococcus pneumoniae GA14373]
gi|379587609|gb|EHZ52457.1| DNA topoisomerase I [Streptococcus pneumoniae GA43264]
gi|379590542|gb|EHZ55380.1| DNA topoisomerase I [Streptococcus pneumoniae GA44386]
gi|395874490|gb|EJG85573.1| DNA topoisomerase I [Streptococcus pneumoniae SPAR55]
Length = 695
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 369/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|221231952|ref|YP_002511104.1| DNA topoisomerase I [Streptococcus pneumoniae ATCC 700669]
gi|225854726|ref|YP_002736238.1| DNA topoisomerase I [Streptococcus pneumoniae JJA]
gi|415698846|ref|ZP_11457345.1| DNA topoisomerase I [Streptococcus pneumoniae 459-5]
gi|415749620|ref|ZP_11477564.1| DNA topoisomerase I [Streptococcus pneumoniae SV35]
gi|415752306|ref|ZP_11479417.1| DNA topoisomerase I [Streptococcus pneumoniae SV36]
gi|418123516|ref|ZP_12760449.1| DNA topoisomerase I [Streptococcus pneumoniae GA44378]
gi|418128102|ref|ZP_12764997.1| DNA topoisomerase I [Streptococcus pneumoniae NP170]
gi|418137285|ref|ZP_12774125.1| DNA topoisomerase I [Streptococcus pneumoniae GA11663]
gi|419473302|ref|ZP_14013153.1| DNA topoisomerase I [Streptococcus pneumoniae GA13430]
gi|421238873|ref|ZP_15695439.1| DNA topoisomerase I [Streptococcus pneumoniae 2071247]
gi|421245149|ref|ZP_15701648.1| DNA topoisomerase I [Streptococcus pneumoniae 2081685]
gi|220674412|emb|CAR68964.1| DNA topoisomerase I [Streptococcus pneumoniae ATCC 700669]
gi|225723644|gb|ACO19497.1| DNA topoisomerase I [Streptococcus pneumoniae JJA]
gi|353796862|gb|EHD77200.1| DNA topoisomerase I [Streptococcus pneumoniae GA44378]
gi|353799533|gb|EHD79851.1| DNA topoisomerase I [Streptococcus pneumoniae NP170]
gi|353901276|gb|EHE76820.1| DNA topoisomerase I [Streptococcus pneumoniae GA11663]
gi|379552809|gb|EHZ17898.1| DNA topoisomerase I [Streptococcus pneumoniae GA13430]
gi|381310002|gb|EIC50835.1| DNA topoisomerase I [Streptococcus pneumoniae SV36]
gi|381316718|gb|EIC57463.1| DNA topoisomerase I [Streptococcus pneumoniae 459-5]
gi|381317914|gb|EIC58639.1| DNA topoisomerase I [Streptococcus pneumoniae SV35]
gi|395601310|gb|EJG61458.1| DNA topoisomerase I [Streptococcus pneumoniae 2071247]
gi|395608585|gb|EJG68678.1| DNA topoisomerase I [Streptococcus pneumoniae 2081685]
Length = 695
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 369/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNNEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|284801660|ref|YP_003413525.1| DNA topoisomerase I [Listeria monocytogenes 08-5578]
gi|284994802|ref|YP_003416570.1| DNA topoisomerase I [Listeria monocytogenes 08-5923]
gi|284057222|gb|ADB68163.1| DNA topoisomerase I [Listeria monocytogenes 08-5578]
gi|284060269|gb|ADB71208.1| DNA topoisomerase I [Listeria monocytogenes 08-5923]
Length = 692
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/647 (39%), Positives = 362/647 (55%), Gaps = 48/647 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++V S GHVRDL V ++D+ + L
Sbjct: 5 LVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTENDYEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ--QQDALHENITVARVVFHEITEAS 469
K +K A A+ + LA+DPDREGEAIAWH+ L+ Q D L RVVF+EIT+ +
Sbjct: 65 KELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQSDKL-------RVVFNEITKEA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K + + R+ID +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL +I D
Sbjct: 118 VKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIID 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FKP+EYWT++ K + F A+ K+ + + + K++
Sbjct: 178 REKEINNFKPEEYWTIDGNFLKGKK------KFQANFYGLNGKKK---KLSTADDVKEVM 228
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I +F V +K+ +R P+ TS+LQQ+AA KLN+ TM LAQ+LYEG+ L
Sbjct: 229 SAIKGKSFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLG 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E + I E YG + ++ K K AQ+AHEA
Sbjct: 289 KQGTVGLITYMRTDSTRIADSAILEASNYIKETYGPEFS--RNHKRSDKNAKGAQDAHEA 346
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R P + L D L+LY LIW R +A QM PA + ++VD+ N + FR+
Sbjct: 347 IRPTSAMRSPQEVKEYLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDN--NGVNFRA 404
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+++F GF Y + + KEN IL LK GD + +E +QH T
Sbjct: 405 NGSKIKFHGFMKVYVESNDDNTEEKEN----------ILPDLKKGDKVQSESLEQRQHFT 454
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LVK LEE+GIGRPSTY+ TL +Q RNYV++ ++ P G +V+ +
Sbjct: 455 QPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIE 514
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF E+ D FTA+ME+ELD V G EW ++ +++ RF A + + ++E E
Sbjct: 515 EYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKRFEPNVIKADA-EMEKIEIKDE 573
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C +CG +++K+ ++G F+ C++ P C
Sbjct: 574 PAGID------------CDLCG-APMVYKMGKYGK--FLACSRFPDC 605
>gi|167040337|ref|YP_001663322.1| DNA topoisomerase I [Thermoanaerobacter sp. X514]
gi|300914421|ref|ZP_07131737.1| DNA topoisomerase I [Thermoanaerobacter sp. X561]
gi|307724343|ref|YP_003904094.1| DNA topoisomerase I [Thermoanaerobacter sp. X513]
gi|166854577|gb|ABY92986.1| DNA topoisomerase I [Thermoanaerobacter sp. X514]
gi|300889356|gb|EFK84502.1| DNA topoisomerase I [Thermoanaerobacter sp. X561]
gi|307581404|gb|ADN54803.1| DNA topoisomerase I [Thermoanaerobacter sp. X513]
Length = 693
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 251/654 (38%), Positives = 370/654 (56%), Gaps = 54/654 (8%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
KS+V+VES KAK I +LG ++V S GHVRDL + +++F+ +
Sbjct: 2 AKSLVIVESPAKAKTISKFLGKNFKVAASMGHVRDLPKSQLGIDIENNFAPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV---ARVVFHEI 465
++++K A+ + LA+DPDREGEAI+WHI ++L N+ + R+ FHEI
Sbjct: 62 AIIENLKKEAKDADKIFLATDPDREGEAISWHIAQLL--------NLNIEEPCRIEFHEI 113
Query: 466 TEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALS 525
T+ +++ AL++ R ID NLV A ARR LD L+G+ ISPLLW+K+ SAGRVQS A
Sbjct: 114 TKNAVQTALKSPRSIDLNLVDAQQARRILDRLVGYKISPLLWKKIKRGLSAGRVQSVAAR 173
Query: 526 LICDREMEIDEFKPQEYWTVEAVL-DKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTE 584
LICDRE EI+ F P+EYW++ A+L D+K S + F R +++ + + +
Sbjct: 174 LICDREREIEAFVPEEYWSITAILSDEKNSGKFE--------AKFYGTREDKVELKTKED 225
Query: 585 AKDIEQKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLY 643
I ++ +I K + ++NP+ P+ITSTLQQ+A+ KL F+A TM +AQ+LY
Sbjct: 226 VDKILAALSEE--YIIDKVKTGVKKRNPSPPFITSTLQQEASRKLGFTAKKTMLIAQQLY 283
Query: 644 EGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA 703
EGV++ + GLITY+RTD +++EA E+ I E++G + E Y K N
Sbjct: 284 EGVEIKGEGSVGLITYIRTDSTRVANEAKAEVYKYIVEKFGKEYTNPEA--NYASKRANV 341
Query: 704 QEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADE 763
Q+AHEAIRPT I R P + L D KLY L+WSR +A QM PA + +DI N
Sbjct: 342 QDAHEAIRPTSIYRDPESIKDSLTPDQYKLYKLVWSRFLASQMAPAIYDTVSMDIVN--N 399
Query: 764 SIVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
VF++S S ++FLGF Y E D +E EE + L+ G L+L E+
Sbjct: 400 GYVFKASGSSIKFLGFMTVYVEGTDM-----QEEEEK-------TVPVLQEGTKLFLEEL 447
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
+ QH TQPP RY+E SL+K+LEE GIGRPSTYA T+ L +R YV + L P G
Sbjct: 448 KPMQHFTQPPPRYTEASLIKELEEKGIGRPSTYAPTISTLLERGYVVKDKKNLKPTELGF 507
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ L +FS++ D FTA+ME +LD + G +W ++ +++ F + A+
Sbjct: 508 IVTDALKEFFSKIVDVKFTAEMEEQLDKIEEGQVKWYEVVQEFYEDFYNTLKIAE----- 562
Query: 943 QVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E+M E + + + D C +CG ++ K R+G F+ C+ P C
Sbjct: 563 --EQMEEIDVKEEVEVT----DIKCELCGRN-MVVKKGRYGK--FLACSGFPEC 607
>gi|111656954|ref|ZP_01407769.1| hypothetical protein SpneT_02001810 [Streptococcus pneumoniae
TIGR4]
Length = 693
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 369/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNNEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|89895300|ref|YP_518787.1| hypothetical protein DSY2554 [Desulfitobacterium hafniense Y51]
gi|219669734|ref|YP_002460169.1| DNA topoisomerase I [Desulfitobacterium hafniense DCB-2]
gi|423074863|ref|ZP_17063587.1| DNA topoisomerase I [Desulfitobacterium hafniense DP7]
gi|89334748|dbj|BAE84343.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539994|gb|ACL21733.1| DNA topoisomerase I [Desulfitobacterium hafniense DCB-2]
gi|361854253|gb|EHL06341.1| DNA topoisomerase I [Desulfitobacterium hafniense DP7]
Length = 696
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/683 (37%), Positives = 378/683 (55%), Gaps = 58/683 (8%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES KAK I +L + Y V S GH+RDL V D+DF +
Sbjct: 2 AKTLVIVESPAKAKSISKFLSNNYTVKASMGHLRDLPKSQMGVDVDNDFEPKYIAIRGRG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+K ++ A A ++LASDPDREGEAIAWH+ +L A R+ FHEIT+
Sbjct: 62 DLIKELRAAAKTANKILLASDPDREGEAIAWHLGHLLGLDLAEK-----CRIEFHEITKP 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I A++ R+ID++ V A ARR LD L+G+ +SP LWRK+ SAGRVQS A+ LIC
Sbjct: 117 AITAAIKHPRQIDSSKVDAQQARRVLDRLVGYQLSPFLWRKVKKGLSAGRVQSVAVRLIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI EF P+EYWT+ A L + F A L K ++++I S E + +
Sbjct: 177 DREEEIREFIPEEYWTLTASLKSEGG------VFSAKLAR---KGEHRIAIASEEEMQKV 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
Q++ ++V K+ + +K P+P + TS+LQQ+A KLN S TM LAQ+LYEG++
Sbjct: 228 LQELADQTYRV-KDVRTKEKKKQPSPPFTTSSLQQEAHRKLNMSPKRTMMLAQQLYEGIE 286
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
L GLITYMRTD + IS+ A +E + I E YG+ + P E PR+ FK AQEAH
Sbjct: 287 LGKAGGIGLITYMRTDSVRISETAQEEAKEFIAEHYGADYYPPE-PRQ-FKSKGRAQEAH 344
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT I R P + L D L+LY L+W R +A QM A + + V++ + +F
Sbjct: 345 EAIRPTSILRTPDSVKEFLSRDQLRLYRLVWERFLASQMSAAVLDTLTVEVEAGE--YLF 402
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S V F G+ A YED +END E + +++ + L + +++ KQH
Sbjct: 403 RANASTVRFPGYLAVYED---------GQDENDDQEEGTLAANIQPDESLNVLQLQEKQH 453
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+PP +Y+E SLV+K+EE GIGRPSTYA T++ +Q R YV + + L P G +V +
Sbjct: 454 FTEPPPKYTEASLVRKMEEEGIGRPSTYAPTIETIQSRGYVAKEGKQLSPTELGEIVVSI 513
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCA-QSLHIHQVEK 946
L YF E+ D FTA+ME LD++ G WK ++ D++ F+ A Q + Q+E
Sbjct: 514 LKEYFPEIVDLEFTANMEKRLDDIEEGALPWKAVIRDFYGPFAESIEEADQVMGKVQIED 573
Query: 947 MLEKTFGDSL-------------FASLP-------------NKDRSCPVCGEGTLIFKVS 980
+ + ++ F + P R CP CG L+ + S
Sbjct: 574 KVSEEICENCGRNMVIKMGRYGKFLACPGFPECRNTKPLLEEVGRPCPDCG-NPLVIRRS 632
Query: 981 RFGAGYFIGCNQHPRCNYIAKTL 1003
+ G ++ GC+ +P C +++ L
Sbjct: 633 KKGRKFY-GCSTYPECEFVSWEL 654
>gi|417848371|ref|ZP_12494316.1| DNA topoisomerase I [Streptococcus mitis SK1073]
gi|339452585|gb|EGP65208.1| DNA topoisomerase I [Streptococcus mitis SK1073]
Length = 695
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 367/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ FKP+EYWT++ V K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFKPEEYWTIDGVFKK------GTKQFQASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFEGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQCVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|417317429|ref|ZP_12104047.1| DNA topoisomerase I [Listeria monocytogenes J1-220]
gi|328475119|gb|EGF45903.1| DNA topoisomerase I [Listeria monocytogenes J1-220]
Length = 640
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/647 (39%), Positives = 362/647 (55%), Gaps = 48/647 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++V S GHVRDL V + D+ + L
Sbjct: 5 LVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTEHDYEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ--QQDALHENITVARVVFHEITEAS 469
K +K A A+ + LA+DPDREGEAIAWH+ L+ Q D L RVVF+EIT+ +
Sbjct: 65 KELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQSDKL-------RVVFNEITKEA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K + + R+ID +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL +I D
Sbjct: 118 VKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIID 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FKP+EYWT++ K + F A+ K+ +LS + K++
Sbjct: 178 REKEINNFKPEEYWTIDGNFLKGKK------KFQANFYGVNGKK-KKLSTAD--DVKEVM 228
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I +F V +K+ +R P+ TS+LQQ+AA KLN+ TM LAQ+LYEG+ L
Sbjct: 229 SAIKGKSFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLG 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E + I E YG + ++ K K AQ+AHEA
Sbjct: 289 KQGTVGLITYMRTDSTRIADSAILEASNYIKETYGPEFS--RNHKRSDKNAKGAQDAHEA 346
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R P + L D L+LY LIW R +A QM PA + ++VD+ N + FR+
Sbjct: 347 IRPTSAMRSPQEVKEFLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDN--NGVNFRA 404
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+++F GF Y + + KEN IL LK GD + +E +QH T
Sbjct: 405 NGSKIKFHGFMKVYVESNDDNTEEKEN----------ILPDLKKGDKVQSESLEQRQHFT 454
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LVK LEE+GIGRPSTY+ TL +Q RNYV++ ++ P G +V+ +
Sbjct: 455 QPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIE 514
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF E+ D FTA+ME+ELD V G EW ++ +++ RF A + + ++E E
Sbjct: 515 EYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKRFEPNVIKADA-EMEKIEIKDE 573
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C +CG +++K+ ++G F+ C++ P C
Sbjct: 574 PAGID------------CDLCG-APMVYKMGKYGK--FLACSRFPDC 605
>gi|312111688|ref|YP_003990004.1| DNA topoisomerase I [Geobacillus sp. Y4.1MC1]
gi|336236063|ref|YP_004588679.1| DNA topoisomerase I [Geobacillus thermoglucosidasius C56-YS93]
gi|423720607|ref|ZP_17694789.1| DNA topoisomerase I [Geobacillus thermoglucosidans TNO-09.020]
gi|311216789|gb|ADP75393.1| DNA topoisomerase I [Geobacillus sp. Y4.1MC1]
gi|335362918|gb|AEH48598.1| DNA topoisomerase I [Geobacillus thermoglucosidasius C56-YS93]
gi|383365960|gb|EID43251.1| DNA topoisomerase I [Geobacillus thermoglucosidans TNO-09.020]
Length = 691
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V ++ + + +
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDINNGYEPKYITIRGKGQII 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ ML+ +H + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVFLAADPDREGEAIAWHLANMLELD--IHSD---CRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ Q R ID NLV A ARR LD L+G+NISPLLW+K+ SAGRVQS AL LI DRE
Sbjct: 120 ESFQHPRAIDMNLVDAQQARRVLDRLVGYNISPLLWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI +F+P+EYWT++A K +TF+ F +L + + + I ++
Sbjct: 180 KEIKQFQPEEYWTIQAEFVKGN----ETFT-----ASFYGADGQKLDLKNEADVSAILRR 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
IN +F V +K+ R P+ TS+LQQ+AA KLNF TM +AQ+LYEG+ L
Sbjct: 231 INGNHFTVTSVAKKERKRNPVPPFTTSSLQQEAARKLNFRTKKTMMIAQQLYEGIDLGSE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD +S+ A +E S I +G A +E ++ KK NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRVSESAQQEALSYIEATFGKEFAAQEKRKE--KKSANAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R P + L D +LY LIW R +A QM A + + V++ N ++FR++
Sbjct: 349 PTSVFRDPEKVKPYLTRDQFRLYKLIWERFVASQMAAALLDTMSVELENG--GVIFRANG 406
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+V+F GF Y E D + +E DR +L L+ G+ ++ ++E KQH TQ
Sbjct: 407 SKVKFPGFMKVYVEGTD------DQTDEQDR-----LLPDLQEGETVFSKDIEPKQHFTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEELGIGRPSTYA T+ +Q RNYV ++++ P G +V +
Sbjct: 456 PPPRYTEARLVKTLEELGIGRPSTYAPTIDTIQKRNYVVLENKRFVPTELGEIVVELILE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F E+ D FTA ME LD + G +W ++ +++ F A+ + +VE E
Sbjct: 516 FFPEIIDVEFTAKMEKNLDEIEEGKVQWVKVVDEFYREFEKRLQIAEK-EMKEVEIKDEP 574
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C VCG +++K+ RFG F+ C+ P C
Sbjct: 575 AGVD------------CEVCG-SPMVYKMGRFGK--FVACSNFPEC 605
>gi|452991222|emb|CCQ97477.1| DNA topoisomerase I [Clostridium ultunense Esp]
Length = 694
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/686 (37%), Positives = 380/686 (55%), Gaps = 71/686 (10%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I +LG Y+V S GHVRDL S + + +F +
Sbjct: 3 KNLVIVESPAKAKTIGKFLGKNYKVKASVGHVRDLPKSSLGIDIEKNFQPKYITIRGKGP 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ-QQDALHENITVARVVFHEITEA 468
++ +K ++ + LA+DPDREGEAI+WH+ +L ++D L RV F+EIT+
Sbjct: 63 VVQELKNEAKKSDKIFLATDPDREGEAISWHLAYILGIEEDEL------VRVEFNEITKD 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I A++ R ID NLV A ARR LD L+G+ ISPLLWRK+ SAGRVQS + LIC
Sbjct: 117 AILNAIKKPRPIDRNLVDAQQARRILDRLVGYKISPLLWRKIKKGLSAGRVQSVTVKLIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHF-QSKRLNQLSIGSHTEAKD 587
DRE EI+ F P+EYW+++A+L+K D F A + + +L + + E
Sbjct: 177 DREKEIESFVPKEYWSIKALLEK------DEIPFEAAFYGIMKDGKEKKLDLPNKEEVDR 230
Query: 588 IEQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
I + ++ NF V+K K+ R+NP PY TSTLQQDA+ KL FS TM LAQ++YEG+
Sbjct: 231 ILKSLDKNNF-VVKEVKKGTKRRNPYAPYTTSTLQQDASKKLGFSTRKTMMLAQQIYEGI 289
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN-AQE 705
+ GLITYMRTD +S+EA K + I + +G ++ G + Y K K AQ+
Sbjct: 290 DIKKEGTVGLITYMRTDSTRVSEEAVKLTKLYIIDNFGKAYS--NGGKTYINKSKKEAQD 347
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHE IRPT + R P + L ED KLY LIW+R ++ QM PA I V I + +
Sbjct: 348 AHEGIRPTSVLRRPDDVKSSLTEDQFKLYQLIWNRFISSQMSPAKYDTISVKIFSNEN-- 405
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
+FR+S S+++F GF Y +EN E+ R + LK G+ + + ++E
Sbjct: 406 IFRASGSKLKFDGFLKVY--------NIEENAEDSRE-----MPILKEGEIVKVNKIEPN 452
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH TQPPARY+E SL+K LEELGIGRPSTY+ T+ + +R YV + +R P G +V+
Sbjct: 453 QHFTQPPARYTEASLIKTLEELGIGRPSTYSPTISTILNREYVNLNNRSFVPTELGILVN 512
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
L YF ++ D FTA++E +LD ++ G W+ ++ +++ F A+ +++
Sbjct: 513 DLLEEYFKDIVDEKFTAELEEKLDEIAEGKYSWQLVVEEFYREFDKVLKVAE----EEID 568
Query: 946 KM-LEKTFGDSL-----------------FASLPNK-------------DRSCPVCGEGT 974
K+ +E D + F + P D +CP CG G
Sbjct: 569 KIKIEDEVTDEVCEKCGKNMVIKYGRYGKFLACPGYPECKNTKPILDQLDIACPYCG-GN 627
Query: 975 LIFKVSRFGAGYFIGCNQHPRCNYIA 1000
++ + S+ G ++ GC+ P CN+++
Sbjct: 628 IVRRRSKKGRTFY-GCSNFPDCNFVS 652
>gi|292670828|ref|ZP_06604254.1| DNA topoisomerase TopA [Selenomonas noxia ATCC 43541]
gi|292647449|gb|EFF65421.1| DNA topoisomerase TopA [Selenomonas noxia ATCC 43541]
Length = 770
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 272/681 (39%), Positives = 370/681 (54%), Gaps = 68/681 (9%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK I+ +LG Y V S GH+RDL + + DFS +
Sbjct: 42 KILVIVESPAKAKTIERHLGKNYVVRASMGHLRDLPKSQFGIDVEHDFSPKYINVRGKGE 101
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEML---QQQDALHENITVARVVFHEIT 466
++S+K A+ + LASDPDREGEAIAWH+ +L ++D R+VFHEIT
Sbjct: 102 LIRSLKKEAKDADKIYLASDPDREGEAIAWHLAFILGIDPKKDC--------RIVFHEIT 153
Query: 467 EASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSL 526
+ +I+ A+Q R ID V A ARR LD ++G+ +SPLLWRK+ SAGRVQS + L
Sbjct: 154 KPAIEEAVQHPRPIDMEQVDAQQARRMLDRIVGYKLSPLLWRKVRKGLSAGRVQSVTVRL 213
Query: 527 ICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAK 586
ICDRE EID F+ +EYWTVEA L K E SF A +TH K+ LS+ S + K
Sbjct: 214 ICDREREIDSFQSEEYWTVEAKLKKGEK------SFAAEVTHAHGKK---LSLHSQADTK 264
Query: 587 DIEQKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
+ + F ++K K+S RK P P+ TS+LQQDAA KL F++ TM +AQ+LYEG
Sbjct: 265 TLTDDLAQQKF-LVKEVKQSERRKKPAPPFTTSSLQQDAARKLGFTSGRTMMIAQQLYEG 323
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
+ L A GLITYMRTD IS+ A E R I YG + P P Y K AQ+
Sbjct: 324 IVLGRQGATGLITYMRTDSTRISNLAVDEARGYISAEYGKEYIPMR-PNIYAMG-KKAQD 381
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHE IRPT I R PA + L+ D L+LY+LIW R A QM A I I D +
Sbjct: 382 AHEGIRPTSILRTPADVEHYLNRDQLRLYTLIWQRFAASQMSAAVYDTISAQIAAGDYQL 441
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
R+ S+++F G+ A Y GA E + E +L L GD L L ++ +
Sbjct: 442 --RAHGSKLKFRGYTAVY----VGA-------EISKKEKDTLLPELAAGDSLALSKLNPE 488
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH T+PP RY++ S+VK LEE+GIGRPSTYA ++ +Q R YV + + +P G +V+
Sbjct: 489 QHFTEPPPRYNDASIVKTLEEMGIGRPSTYAPIIETIQKRGYVERREKQFHPTELGFIVT 548
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
L YF + D FTA++E ELD V+ G + LL ++++ F A+S+ I +V+
Sbjct: 549 DMLEEYFKHIVDVKFTANLEGELDEVADGSLDKNDLLRNFYNPFEETLKKAESV-IGEVD 607
Query: 946 KMLEKT-----------------FGDSLFAS-----------LPNKDRSCPVCGEGTLIF 977
E T FG L L + SCP CG G ++
Sbjct: 608 IPDEVTDIPCDKCGRMMVVKQGRFGKFLACPGFPDCRNAKPLLRDTGVSCPKCG-GKIVE 666
Query: 978 KVSRFGAGYFIGCNQHPRCNY 998
+ SR G +F GC+ +P C+Y
Sbjct: 667 RKSRRGRSFF-GCDNYPACDY 686
>gi|386043586|ref|YP_005962391.1| DNA topoisomerase I [Listeria monocytogenes 10403S]
gi|404410572|ref|YP_006696160.1| DNA topoisomerase I [Listeria monocytogenes SLCC5850]
gi|345536820|gb|AEO06260.1| DNA topoisomerase I [Listeria monocytogenes 10403S]
gi|404230398|emb|CBY51802.1| DNA topoisomerase I [Listeria monocytogenes SLCC5850]
Length = 692
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/647 (39%), Positives = 362/647 (55%), Gaps = 48/647 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++V S GHVRDL V ++D+ + L
Sbjct: 5 LVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTENDYEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ--QQDALHENITVARVVFHEITEAS 469
K +K A A+ + LA+DPDREGEAIAWH+ L+ Q D L RVVF+EIT+ +
Sbjct: 65 KELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQSDKL-------RVVFNEITKEA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K + + R+ID +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL +I D
Sbjct: 118 VKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIID 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FKP+EYWT++ K + F A+ K+ + + + K++
Sbjct: 178 REKEINNFKPEEYWTIDGNFLKGKK------KFQANFYGLNGKKK---KLSTADDVKEVM 228
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I +F V +K+ +R P+ TS+LQQ+AA KLN+ TM LAQ+LYEG+ L
Sbjct: 229 SAIKGKSFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLG 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E + I E YG + ++ K K AQ+AHEA
Sbjct: 289 KQGTVGLITYMRTDSTRIADSAILEASNYIKETYGPEFS--RNHKRSDKNAKGAQDAHEA 346
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R P + L D L+LY LIW R +A QM PA + ++VD+ N + FR+
Sbjct: 347 IRPTSAMRSPQEVKEYLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDN--NGVNFRA 404
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+++F GF Y + + KEN IL LK GD + +E +QH T
Sbjct: 405 NGSKIKFHGFMKVYVESNDDNTEEKEN----------ILPDLKKGDKVQSESLEQRQHFT 454
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LVK LEE+GIGRPSTY+ TL +Q RNYV++ ++ P G +V+ +
Sbjct: 455 QPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIE 514
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF E+ D FTA+ME+ELD V G EW ++ +++ RF A + + ++E E
Sbjct: 515 DYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKRFEPNVIKADA-EMEKIEIKDE 573
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C +CG +++K+ ++G F+ C++ P C
Sbjct: 574 PAGID------------CDLCG-APMVYKMGKYGK--FLACSRFPDC 605
>gi|15901123|ref|NP_345727.1| DNA topoisomerase I [Streptococcus pneumoniae TIGR4]
gi|14972745|gb|AAK75367.1| DNA topoisomerase I [Streptococcus pneumoniae TIGR4]
Length = 699
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 369/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNNEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|307709504|ref|ZP_07645961.1| DNA topoisomerase I [Streptococcus mitis SK564]
gi|307619818|gb|EFN98937.1| DNA topoisomerase I [Streptococcus mitis SK564]
Length = 695
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTIDAVFKK------GTKQFQASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|182684010|ref|YP_001835757.1| DNA topoisomerase I [Streptococcus pneumoniae CGSP14]
gi|182629344|gb|ACB90292.1| DNA topoisomerase I [Streptococcus pneumoniae CGSP14]
Length = 701
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 369/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 21 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 80
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 81 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 135
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 136 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 195
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 196 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLS 246
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 247 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 306
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 307 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 359
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 360 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 417
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 418 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 461
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 462 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 521
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 522 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 573
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 574 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 616
>gi|444388180|ref|ZP_21186170.1| DNA topoisomerase I [Streptococcus pneumoniae PCS125219]
gi|444389624|ref|ZP_21187539.1| DNA topoisomerase I [Streptococcus pneumoniae PCS70012]
gi|444392116|ref|ZP_21189865.1| DNA topoisomerase I [Streptococcus pneumoniae PCS81218]
gi|444395161|ref|ZP_21192707.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0002]
gi|444397714|ref|ZP_21195197.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0006]
gi|444400196|ref|ZP_21197612.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0007]
gi|444402645|ref|ZP_21199803.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0008]
gi|444404693|ref|ZP_21201638.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0009]
gi|444407334|ref|ZP_21204001.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0010]
gi|444417030|ref|ZP_21213092.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0360]
gi|444419227|ref|ZP_21215105.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0427]
gi|444250330|gb|ELU56811.1| DNA topoisomerase I [Streptococcus pneumoniae PCS125219]
gi|444256087|gb|ELU62425.1| DNA topoisomerase I [Streptococcus pneumoniae PCS70012]
gi|444258480|gb|ELU64802.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0002]
gi|444260371|gb|ELU66679.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0006]
gi|444263922|gb|ELU70050.1| DNA topoisomerase I [Streptococcus pneumoniae PCS81218]
gi|444266132|gb|ELU72103.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0008]
gi|444267054|gb|ELU72974.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0007]
gi|444270930|gb|ELU76681.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0010]
gi|444276315|gb|ELU81881.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0009]
gi|444284643|gb|ELU89767.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0360]
gi|444287274|gb|ELU92207.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0427]
Length = 695
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|16803315|ref|NP_464800.1| DNA topoisomerase I [Listeria monocytogenes EGD-e]
gi|255025705|ref|ZP_05297691.1| DNA topoisomerase I [Listeria monocytogenes FSL J2-003]
gi|386050251|ref|YP_005968242.1| DNA topoisomerase I [Listeria monocytogenes FSL R2-561]
gi|404283766|ref|YP_006684663.1| DNA topoisomerase I [Listeria monocytogenes SLCC2372]
gi|405758322|ref|YP_006687598.1| DNA topoisomerase I [Listeria monocytogenes SLCC2479]
gi|16410691|emb|CAC99353.1| topA [Listeria monocytogenes EGD-e]
gi|346424097|gb|AEO25622.1| DNA topoisomerase I [Listeria monocytogenes FSL R2-561]
gi|404233268|emb|CBY54671.1| DNA topoisomerase I [Listeria monocytogenes SLCC2372]
gi|404236204|emb|CBY57606.1| DNA topoisomerase I [Listeria monocytogenes SLCC2479]
Length = 692
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/647 (39%), Positives = 362/647 (55%), Gaps = 48/647 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++V S GHVRDL V ++D+ + L
Sbjct: 5 LVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTENDYEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ--QQDALHENITVARVVFHEITEAS 469
K +K A A+ + LA+DPDREGEAIAWH+ L+ Q D L RVVF+EIT+ +
Sbjct: 65 KELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQSDKL-------RVVFNEITKEA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K + + R+ID +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL +I D
Sbjct: 118 VKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIID 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FKP+EYWT++ K + F A+ K+ + + + K++
Sbjct: 178 REKEINNFKPEEYWTIDGNFLKGKK------KFQANFYGVNGKKK---KLSTADDVKEVM 228
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I +F V +K+ +R P+ TS+LQQ+AA KLN+ TM LAQ+LYEG+ L
Sbjct: 229 SAIKGKSFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLG 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E + I E YG + ++ K K AQ+AHEA
Sbjct: 289 KQGTVGLITYMRTDSTRIADSAILEASNYIKETYGPEFS--RNHKRSDKNAKGAQDAHEA 346
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R P + L D L+LY LIW R +A QM PA + ++VD+ N + FR+
Sbjct: 347 IRPTSAMRSPQEVKEYLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDN--NGVNFRA 404
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+++F GF Y + + KEN IL LK GD + +E +QH T
Sbjct: 405 NGSKIKFHGFMKVYVESNDDNTEEKEN----------ILPDLKKGDKVQSESLEQRQHFT 454
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LVK LEE+GIGRPSTY+ TL +Q RNYV++ ++ P G +V+ +
Sbjct: 455 QPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIE 514
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF E+ D FTA+ME+ELD V G EW ++ +++ RF A + + ++E E
Sbjct: 515 EYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKRFEPNVIKADA-EMEKIEIKDE 573
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C +CG +++K+ ++G F+ C++ P C
Sbjct: 574 PAGID------------CDLCG-APMVYKMGKYGK--FLACSRFPDC 605
>gi|433655058|ref|YP_007298766.1| DNA topoisomerase I, bacterial [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293247|gb|AGB19069.1| DNA topoisomerase I, bacterial [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 686
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/652 (38%), Positives = 369/652 (56%), Gaps = 54/652 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
KS+V+VES +KAK I YLG Y+V S GH+RDL + + +F +
Sbjct: 3 KSLVIVESPSKAKTIHKYLGKNYKVEASMGHIRDLPKSQLGIDIEKNFEPKYITIRGKGP 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV---ARVVFHEIT 466
++ +K A + LA+DPDREGEAI+WH+ +L NI V R+ FHEIT
Sbjct: 63 IIEKLKKEAKNASKIYLATDPDREGEAISWHLANLL--------NIDVNDKCRIEFHEIT 114
Query: 467 EASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSL 526
+ +I+ A++ R+I+ NLV A ARR LD L+G+NISPLLW+K+ SAGRVQS A L
Sbjct: 115 KNAIQNAIKNPRKINMNLVDAQQARRILDRLVGYNISPLLWKKIKRGLSAGRVQSVATRL 174
Query: 527 ICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAK 586
ICDRE EI+EFKP+EYW++ A L K++ T F A F + ++ + + +
Sbjct: 175 ICDREKEIEEFKPEEYWSLSAFLYKEKK----TQYFEA---KFYGTKDGKIDLKNENDVN 227
Query: 587 DIEQKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
+I + + A+ ++ N K ++NP+ P+ITST+QQ+A+ KL F+A TM +AQ+LYEG
Sbjct: 228 NIIKDL--ADDYIVDNVKTGTKKRNPSPPFITSTMQQEASKKLGFTAKKTMMIAQQLYEG 285
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 705
V++ + GLITYMRTD +S+EA K I ++YG +A Y KK N Q+
Sbjct: 286 VEIKGEGSLGLITYMRTDSTRVSEEAKKAAYEYILQKYGKEYANPNAT--YTKKGGNIQD 343
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEAIRPT I P + L D KLY LIWSR +A QM A I +DI N ++
Sbjct: 344 AHEAIRPTYINLDPDQIKDSLKPDQYKLYKLIWSRFLASQMSQALYDTITMDIIN--KNY 401
Query: 766 VFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVEL 824
+F++S S+++F GF Y E+ D I K L L+ GD L L E++
Sbjct: 402 IFKASGSKLKFAGFMTVYTEEADTENIEEK------------TLPLLENGDHLKLKELKP 449
Query: 825 KQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMV 884
+QH TQPPARY+E +L+K+LEE GIGRPSTYA + L +R YV + + L P G +V
Sbjct: 450 EQHFTQPPARYTEATLIKELEEKGIGRPSTYAPIISTLLERGYVIKEKKNLKPTELGFIV 509
Query: 885 SAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV 944
+ + +F ++ D FTA+ME +LD + G+ +W ++ +++ F+ A+
Sbjct: 510 TDVMKEFFPDIVDVKFTAEMEEQLDKIEEGIEKWCDVIDGFYNNFNDSLKVAE------- 562
Query: 945 EKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E+M + D + D C CG ++ K R+G F+ C P C
Sbjct: 563 EQMKDIEIKDEV------TDIKCEFCGR-NMVIKYGRYGK--FLACPGFPEC 605
>gi|345019902|ref|ZP_08783515.1| DNA topoisomerase I [Ornithinibacillus scapharcae TW25]
Length = 692
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 260/680 (38%), Positives = 373/680 (54%), Gaps = 63/680 (9%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHV DL V ++ + + + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVIDLPKSQMGVNVEEGYKLKYITIRGKGDVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K ++ + A+ + LA+DPDREGEAIAWH+ L + EN + RVVF+EIT+ +IK
Sbjct: 65 KDLRKSAKKAKKIYLAADPDREGEAIAWHLAHALN----VDEN-SECRVVFNEITKEAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R+ID +LV A ARR LD L+G+NISPLLW+K+ SAGRVQS AL +I DRE
Sbjct: 120 ESFKNPRKIDTDLVDAQQARRVLDRLVGYNISPLLWKKVKKGLSAGRVQSVALKMITDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKP+EYW++EA + F K+ L + S +E ++ K
Sbjct: 180 EEINNFKPEEYWSIEANFQTGKEL------FDGAFYGVDGKK---LELSSESEVNNVLNK 230
Query: 592 INSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL-- 648
+ F + K +K+ R+NP+ P+ TS+LQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LVDNKFTIDKVTKKER-RRNPSQPFTTSSLQQEAARKLNFRAKKTMMIAQQLYEGIDLGK 289
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
G GLITYMRTD IS+ A E ++ + E+YGS + G K K+ +NAQ+AHE
Sbjct: 290 AAGGITGLITYMRTDSTRISETAKTEAKAYVEEKYGSEYL---GVNKKEKQKENAQDAHE 346
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P L +L D L+LY LIW R +A QM PA + + V + N + FR
Sbjct: 347 AIRPTSVMREPNSLKAILSRDQLRLYKLIWERFLASQMAPAVLDTMTVQLIN--NKVEFR 404
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S+++F GF Y E ++++ IL L G + E+ QH
Sbjct: 405 ATGSKIKFKGFMKV----------YVEGTDDNKKVEDKILPDLDEGMVVDANEIIPNQHF 454
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RY+E LVK +EELGIGRPSTYA TL +Q R YVT+ ++ P G +V L
Sbjct: 455 TQPPPRYTEARLVKTMEELGIGRPSTYAPTLDTIQRRGYVTLDNKRFIPTELGIIVVDIL 514
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE--- 945
+F E+ + FTA ME +LD V G EW ++ D++ F A+ + ++E
Sbjct: 515 KEFFPEIINVEFTAKMENDLDAVEEGKVEWVNIIDDFYHGFQKRLVKAEE-EMDKIEIKD 573
Query: 946 ------------KMLEKT--FGDSLFAS-----------LPNKDRSCPVCGEGTLIFKVS 980
+M+ K +G L S L +CP C EG ++ + S
Sbjct: 574 EPAGIDCENCGHEMVYKMGRYGKFLACSNFPDCRNTKPILKEVGVTCPKCKEGNVVERKS 633
Query: 981 RFGAGYFIGCNQHPRCNYIA 1000
+ F GC++ P C++++
Sbjct: 634 K-KRRVFYGCDRFPECDFVS 652
>gi|417686737|ref|ZP_12336013.1| DNA topoisomerase I [Streptococcus pneumoniae GA41301]
gi|418159986|ref|ZP_12796685.1| DNA topoisomerase I [Streptococcus pneumoniae GA17227]
gi|419521222|ref|ZP_14060817.1| DNA topoisomerase I [Streptococcus pneumoniae GA05245]
gi|332074873|gb|EGI85345.1| DNA topoisomerase I [Streptococcus pneumoniae GA41301]
gi|353821719|gb|EHE01895.1| DNA topoisomerase I [Streptococcus pneumoniae GA17227]
gi|379538522|gb|EHZ03702.1| DNA topoisomerase I [Streptococcus pneumoniae GA05245]
Length = 695
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNNEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDVFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|168493181|ref|ZP_02717324.1| DNA topoisomerase I [Streptococcus pneumoniae CDC3059-06]
gi|418074035|ref|ZP_12711291.1| DNA topoisomerase I [Streptococcus pneumoniae GA11184]
gi|418089636|ref|ZP_12726792.1| DNA topoisomerase I [Streptococcus pneumoniae GA43265]
gi|418098609|ref|ZP_12735708.1| DNA topoisomerase I [Streptococcus pneumoniae 6901-05]
gi|418105328|ref|ZP_12742386.1| DNA topoisomerase I [Streptococcus pneumoniae GA44500]
gi|418114807|ref|ZP_12751795.1| DNA topoisomerase I [Streptococcus pneumoniae 5787-06]
gi|418116973|ref|ZP_12753943.1| DNA topoisomerase I [Streptococcus pneumoniae 6963-05]
gi|418135302|ref|ZP_12772158.1| DNA topoisomerase I [Streptococcus pneumoniae GA11426]
gi|418173622|ref|ZP_12810235.1| DNA topoisomerase I [Streptococcus pneumoniae GA41277]
gi|418216691|ref|ZP_12843414.1| DNA topoisomerase I [Streptococcus pneumoniae Netherlands15B-37]
gi|419464648|ref|ZP_14004540.1| DNA topoisomerase I [Streptococcus pneumoniae GA04175]
gi|419469101|ref|ZP_14008972.1| DNA topoisomerase I [Streptococcus pneumoniae GA06083]
gi|419497424|ref|ZP_14037133.1| DNA topoisomerase I [Streptococcus pneumoniae GA47522]
gi|421281224|ref|ZP_15732022.1| DNA topoisomerase I [Streptococcus pneumoniae GA04672]
gi|421309675|ref|ZP_15760302.1| DNA topoisomerase I [Streptococcus pneumoniae GA62681]
gi|183576743|gb|EDT97271.1| DNA topoisomerase I [Streptococcus pneumoniae CDC3059-06]
gi|353749535|gb|EHD30179.1| DNA topoisomerase I [Streptococcus pneumoniae GA11184]
gi|353761634|gb|EHD42200.1| DNA topoisomerase I [Streptococcus pneumoniae GA43265]
gi|353769969|gb|EHD50485.1| DNA topoisomerase I [Streptococcus pneumoniae 6901-05]
gi|353777393|gb|EHD57866.1| DNA topoisomerase I [Streptococcus pneumoniae GA44500]
gi|353786320|gb|EHD66733.1| DNA topoisomerase I [Streptococcus pneumoniae 5787-06]
gi|353789334|gb|EHD69729.1| DNA topoisomerase I [Streptococcus pneumoniae 6963-05]
gi|353838439|gb|EHE18517.1| DNA topoisomerase I [Streptococcus pneumoniae GA41277]
gi|353872283|gb|EHE52149.1| DNA topoisomerase I [Streptococcus pneumoniae Netherlands15B-37]
gi|353901450|gb|EHE76992.1| DNA topoisomerase I [Streptococcus pneumoniae GA11426]
gi|379537682|gb|EHZ02864.1| DNA topoisomerase I [Streptococcus pneumoniae GA04175]
gi|379547204|gb|EHZ12342.1| DNA topoisomerase I [Streptococcus pneumoniae GA06083]
gi|379600893|gb|EHZ65672.1| DNA topoisomerase I [Streptococcus pneumoniae GA47522]
gi|395882385|gb|EJG93432.1| DNA topoisomerase I [Streptococcus pneumoniae GA04672]
gi|395911096|gb|EJH21965.1| DNA topoisomerase I [Streptococcus pneumoniae GA62681]
Length = 695
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNNEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|419779227|ref|ZP_14305103.1| DNA topoisomerase I [Streptococcus oralis SK10]
gi|383186255|gb|EIC78725.1| DNA topoisomerase I [Streptococcus oralis SK10]
Length = 695
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 369/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ + + ++ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGMNGKK---MKLTTNEEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F+V + K+ R P PY TST+Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 HLTSKDFKVDQVDKKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASYINDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTGAIFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ +++ FS A+S ++EK+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDEFYKPFSKEVAKAES----EMEKI 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
K C VCG ++ K+ RFG F C+ P C +
Sbjct: 572 QIKDEPAGF---------DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|182625877|ref|ZP_02953643.1| DNA topoisomerase I [Clostridium perfringens D str. JGS1721]
gi|177908911|gb|EDT71403.1| DNA topoisomerase I [Clostridium perfringens D str. JGS1721]
Length = 700
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 268/688 (38%), Positives = 378/688 (54%), Gaps = 77/688 (11%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KAK I+ YLG Y V S GHVRDL V +++++ +
Sbjct: 2 GQKLVIVESPAKAKTIEKYLGKNYVVEASMGHVRDLPKSQLGVDIENEYNPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L ++ ++ + LA+DPDREGEAI+WH+ +L+ + +EN R+ F+EIT+
Sbjct: 62 ELLSKLRKLAKKSDKIYLATDPDREGEAISWHLANVLKIDE--NEN---CRIEFNEITKD 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K +++ R+I+ NLV A ARR LD L+G+ ISPLLWR + SAGRVQSAAL LIC
Sbjct: 117 AVKNSIKHPRKINCNLVDAQQARRVLDRLVGYEISPLLWRNVKWGLSAGRVQSAALKLIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI +F P+EYWTV+ L K + SFP LT +K ++ I + +A I
Sbjct: 177 DREEEIKKFNPEEYWTVDVKLKKGKK------SFPVKLT---TKNKKKIEIKNKEQADQI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
++ + ++ K+ KNP P+ TSTLQQ+A+ KLNF TM +AQ+LYEGV+
Sbjct: 228 IDELKENEY-IVSKIKKGTKNKNPLAPFTTSTLQQEASKKLNFMTKKTMSVAQQLYEGVE 286
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GLITYMRTD + IS EA ++ + I E YG + PEE PR Y K KN Q+AH
Sbjct: 287 VKKFGTVGLITYMRTDSVRISKEAQEKALNFIDETYGKEYVPEE-PRVY-KGKKNIQDAH 344
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT + P + L D KLY+LIW R +A QM + ++I N D +
Sbjct: 345 EAIRPTYVEITPEIAKANLSNDQYKLYALIWKRFIASQMATCILNTNSLEIKNGD--YIL 402
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+S S ++F GF YE + E EE+ +L L+ + L +E KQH
Sbjct: 403 RASGSTIKFDGFMKVYEYISG------EEEES------VLLPELEENEVLKEESIEGKQH 450
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE + VK LEE GIGRPSTY T+ L R YV + +IL P G +V+
Sbjct: 451 FTQPPARYSEAAFVKLLEEKGIGRPSTYVPTISTLISRKYVDREKKILIPTELGFIVNDI 510
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
LS+YF ++ D FTA+ME +LDNV AG W ++ ++++ I + EK
Sbjct: 511 LSNYFKQIVDTDFTAEMEVKLDNVEAGKESWTHIVDEFFTPLKE--------DIEKAEKE 562
Query: 948 LEKT------------------------FGDSL----FASLPNK-------DRSCPVCGE 972
+ K FGD L + N D +CP+CG
Sbjct: 563 ISKVIIEDKVSDVPCDKCGRLMVIKHGRFGDFLACPGYPECQNTKPIVEEVDANCPLCG- 621
Query: 973 GTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
G ++ K S+ G F GC+ +P CN+++
Sbjct: 622 GKILVKRSKKG-NRFYGCSNYPECNFVS 648
>gi|148989287|ref|ZP_01820667.1| DNA topoisomerase I [Streptococcus pneumoniae SP6-BS73]
gi|149002633|ref|ZP_01827565.1| DNA topoisomerase I [Streptococcus pneumoniae SP14-BS69]
gi|149012318|ref|ZP_01833387.1| DNA topoisomerase I [Streptococcus pneumoniae SP19-BS75]
gi|168575716|ref|ZP_02721631.1| DNA topoisomerase I [Streptococcus pneumoniae MLV-016]
gi|194396864|ref|YP_002037865.1| DNA topoisomerase I [Streptococcus pneumoniae G54]
gi|237649963|ref|ZP_04524215.1| DNA topoisomerase I [Streptococcus pneumoniae CCRI 1974]
gi|237822488|ref|ZP_04598333.1| DNA topoisomerase I [Streptococcus pneumoniae CCRI 1974M2]
gi|303254241|ref|ZP_07340350.1| DNA topoisomerase I [Streptococcus pneumoniae BS455]
gi|303258897|ref|ZP_07344876.1| DNA topoisomerase I [Streptococcus pneumoniae SP-BS293]
gi|303261580|ref|ZP_07347527.1| DNA topoisomerase I [Streptococcus pneumoniae SP14-BS292]
gi|303264251|ref|ZP_07350171.1| DNA topoisomerase I [Streptococcus pneumoniae BS397]
gi|303266118|ref|ZP_07352011.1| DNA topoisomerase I [Streptococcus pneumoniae BS457]
gi|303268155|ref|ZP_07353955.1| DNA topoisomerase I [Streptococcus pneumoniae BS458]
gi|307067910|ref|YP_003876876.1| topoisomerase IA [Streptococcus pneumoniae AP200]
gi|387759298|ref|YP_006066276.1| DNA topoisomerase I [Streptococcus pneumoniae INV200]
gi|418144100|ref|ZP_12780900.1| DNA topoisomerase I [Streptococcus pneumoniae GA13494]
gi|418148662|ref|ZP_12785427.1| DNA topoisomerase I [Streptococcus pneumoniae GA13856]
gi|418166899|ref|ZP_12803555.1| DNA topoisomerase I [Streptococcus pneumoniae GA17971]
gi|418180656|ref|ZP_12817226.1| DNA topoisomerase I [Streptococcus pneumoniae GA41688]
gi|418187266|ref|ZP_12823793.1| DNA topoisomerase I [Streptococcus pneumoniae GA47360]
gi|418200118|ref|ZP_12836563.1| DNA topoisomerase I [Streptococcus pneumoniae GA47976]
gi|418202499|ref|ZP_12838929.1| DNA topoisomerase I [Streptococcus pneumoniae GA52306]
gi|419457647|ref|ZP_13997591.1| DNA topoisomerase I [Streptococcus pneumoniae GA02254]
gi|419471186|ref|ZP_14011045.1| DNA topoisomerase I [Streptococcus pneumoniae GA07914]
gi|419477917|ref|ZP_14017741.1| DNA topoisomerase I [Streptococcus pneumoniae GA18068]
gi|419491148|ref|ZP_14030887.1| DNA topoisomerase I [Streptococcus pneumoniae GA47179]
gi|419504040|ref|ZP_14043709.1| DNA topoisomerase I [Streptococcus pneumoniae GA47760]
gi|419514640|ref|ZP_14054265.1| DNA topoisomerase I [Streptococcus pneumoniae England14-9]
gi|419532454|ref|ZP_14071970.1| DNA topoisomerase I [Streptococcus pneumoniae GA47794]
gi|421236382|ref|ZP_15692980.1| DNA topoisomerase I [Streptococcus pneumoniae 2071004]
gi|421268554|ref|ZP_15719424.1| DNA topoisomerase I [Streptococcus pneumoniae SPAR95]
gi|421295943|ref|ZP_15746655.1| DNA topoisomerase I [Streptococcus pneumoniae GA58581]
gi|421303430|ref|ZP_15754094.1| DNA topoisomerase I [Streptococcus pneumoniae GA17484]
gi|421313769|ref|ZP_15764359.1| DNA topoisomerase I [Streptococcus pneumoniae GA47562]
gi|444410292|ref|ZP_21206834.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0076]
gi|444413093|ref|ZP_21209409.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0153]
gi|444423299|ref|ZP_21218914.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0446]
gi|147759244|gb|EDK66237.1| DNA topoisomerase I [Streptococcus pneumoniae SP14-BS69]
gi|147763644|gb|EDK70579.1| DNA topoisomerase I [Streptococcus pneumoniae SP19-BS75]
gi|147925265|gb|EDK76344.1| DNA topoisomerase I [Streptococcus pneumoniae SP6-BS73]
gi|183578150|gb|EDT98678.1| DNA topoisomerase I [Streptococcus pneumoniae MLV-016]
gi|194356531|gb|ACF54979.1| DNA topoisomerase I [Streptococcus pneumoniae G54]
gi|301801887|emb|CBW34609.1| DNA topoisomerase I [Streptococcus pneumoniae INV200]
gi|302598735|gb|EFL65772.1| DNA topoisomerase I [Streptococcus pneumoniae BS455]
gi|302637160|gb|EFL67648.1| DNA topoisomerase I [Streptococcus pneumoniae SP14-BS292]
gi|302639840|gb|EFL70296.1| DNA topoisomerase I [Streptococcus pneumoniae SP-BS293]
gi|302642372|gb|EFL72719.1| DNA topoisomerase I [Streptococcus pneumoniae BS458]
gi|302644288|gb|EFL74542.1| DNA topoisomerase I [Streptococcus pneumoniae BS457]
gi|302646063|gb|EFL76290.1| DNA topoisomerase I [Streptococcus pneumoniae BS397]
gi|306409447|gb|ADM84874.1| Topoisomerase IA [Streptococcus pneumoniae AP200]
gi|353809841|gb|EHD90101.1| DNA topoisomerase I [Streptococcus pneumoniae GA13494]
gi|353813337|gb|EHD93570.1| DNA topoisomerase I [Streptococcus pneumoniae GA13856]
gi|353830495|gb|EHE10625.1| DNA topoisomerase I [Streptococcus pneumoniae GA17971]
gi|353845358|gb|EHE25400.1| DNA topoisomerase I [Streptococcus pneumoniae GA41688]
gi|353851560|gb|EHE31552.1| DNA topoisomerase I [Streptococcus pneumoniae GA47360]
gi|353865165|gb|EHE45074.1| DNA topoisomerase I [Streptococcus pneumoniae GA47976]
gi|353868302|gb|EHE48192.1| DNA topoisomerase I [Streptococcus pneumoniae GA52306]
gi|379531520|gb|EHY96754.1| DNA topoisomerase I [Streptococcus pneumoniae GA02254]
gi|379545902|gb|EHZ11041.1| DNA topoisomerase I [Streptococcus pneumoniae GA07914]
gi|379565353|gb|EHZ30345.1| DNA topoisomerase I [Streptococcus pneumoniae GA18068]
gi|379593284|gb|EHZ58097.1| DNA topoisomerase I [Streptococcus pneumoniae GA47179]
gi|379606238|gb|EHZ70987.1| DNA topoisomerase I [Streptococcus pneumoniae GA47794]
gi|379606717|gb|EHZ71464.1| DNA topoisomerase I [Streptococcus pneumoniae GA47760]
gi|379635189|gb|EHZ99747.1| DNA topoisomerase I [Streptococcus pneumoniae England14-9]
gi|395602227|gb|EJG62370.1| DNA topoisomerase I [Streptococcus pneumoniae 2071004]
gi|395870049|gb|EJG81163.1| DNA topoisomerase I [Streptococcus pneumoniae SPAR95]
gi|395897156|gb|EJH08120.1| DNA topoisomerase I [Streptococcus pneumoniae GA58581]
gi|395902052|gb|EJH12988.1| DNA topoisomerase I [Streptococcus pneumoniae GA17484]
gi|395914269|gb|EJH25113.1| DNA topoisomerase I [Streptococcus pneumoniae GA47562]
gi|444273252|gb|ELU78925.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0153]
gi|444277888|gb|ELU83379.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0076]
gi|444287176|gb|ELU92114.1| DNA topoisomerase I [Streptococcus pneumoniae PNI0446]
Length = 695
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 369/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|414160556|ref|ZP_11416822.1| DNA topoisomerase 1 [Staphylococcus simulans ACS-120-V-Sch1]
gi|410878076|gb|EKS25965.1| DNA topoisomerase 1 [Staphylococcus simulans ACS-120-V-Sch1]
Length = 688
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/646 (38%), Positives = 359/646 (55%), Gaps = 47/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +DDF +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDVEDDFEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
++ +K A+ + LASDPDREGEAIAWH+ +L+ L E+ RVVF+EIT+ ++
Sbjct: 64 VQELKRHAKKAKKIFLASDPDREGEAIAWHLANILK----LDEHAK-NRVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ NLV A ARR +D L+G+NISPLLW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKTPRSIEINLVDAQQARRIVDRLVGYNISPLLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW +E K+S +F A H+++K + + + K I
Sbjct: 179 ENEIRNFKPEEYWKIEGKFRYKKS------TFTAKFLHYKNK---PYKLQKNEDVKFITD 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++N F+V K +++ R P+ TSTLQQ+A+ KL F TM +AQ+LYEG+ L
Sbjct: 230 QLNGNEFEVTKVTRKEKKRNPANPFTTSTLQQEASRKLGFKTRKTMMVAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS +A E + I E+YG + RK K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISADAKAETKDFITEKYGKEYVSH---RKQTGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L +D +LY LIW R +A QM PA + + +D+ D I FR++
Sbjct: 346 RPTKTLRTPDEMKSFLTKDQHRLYKLIWERFVASQMAPAVIDTVAMDVEQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + ++EE ++++ I++ G+ + ++E QH TQ
Sbjct: 404 GQAIKFKGFMTLYVE--------SKDEEEEQNKRLPIIDE---GETVIATDIEPSQHFTQ 452
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 453 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVYEQVKE 512
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++++ F + + EK +EK
Sbjct: 513 YFPEIIDVEFTVNMETLLDKIAEGDENWRNVVGNFYNGFKD--------DVERAEKEMEK 564
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
A C CG ++ K+ R+G F+ C+ P C
Sbjct: 565 IEIKDEPAG-----EDCEKCG-SPMVIKMGRYGK--FMACSNFPDC 602
>gi|257867807|ref|ZP_05647460.1| DNA topoisomerase I [Enterococcus casseliflavus EC30]
gi|257874134|ref|ZP_05653787.1| DNA topoisomerase I [Enterococcus casseliflavus EC10]
gi|257876699|ref|ZP_05656352.1| DNA topoisomerase I [Enterococcus casseliflavus EC20]
gi|257801890|gb|EEV30793.1| DNA topoisomerase I [Enterococcus casseliflavus EC30]
gi|257808298|gb|EEV37120.1| DNA topoisomerase I [Enterococcus casseliflavus EC10]
gi|257810865|gb|EEV39685.1| DNA topoisomerase I [Enterococcus casseliflavus EC20]
Length = 692
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/648 (39%), Positives = 363/648 (56%), Gaps = 46/648 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK I+ YLG Y+V+ S GH+RDL + ++D+ +
Sbjct: 4 KYLVIVESPAKAKTIEKYLGRNYKVVASVGHIRDLPKSKMGIDVENDYEPHYISIRGKGD 63
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+KS++ A AE + LASDPDREGEAIAWH+ +L D +N RVVF+EIT+ +
Sbjct: 64 VIKSLRSAAKKAEKVYLASDPDREGEAIAWHLAFLLGL-DLKDKN----RVVFNEITKDA 118
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A + R ID +LV A ARR LD L+G+++SP+LWRK+ SAGRVQS AL +I D
Sbjct: 119 VKAAFKEPRTIDVDLVDAQQARRILDRLVGYSLSPILWRKVKKGLSAGRVQSVALKIIID 178
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI +F P+EYW+++ K F L + K N SI K++
Sbjct: 179 REKEIRDFVPEEYWSIDGNFKKATKKFKANF---WGLDGKKKKLPNAESI------KEVT 229
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+++ +FQV K K+ R P+ TS+LQQ+AA KLNF TM +AQ+LYEG+ L
Sbjct: 230 DRLSGKDFQVTKVEKKERKRNPSAPFTTSSLQQEAARKLNFRTRKTMMVAQQLYEGIALG 289
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E I YGS + G ++ + AQ+AHEA
Sbjct: 290 KQGTVGLITYMRTDSTRIADTAKGEAAEFIENTYGSEFSAHGGKKR--ANAQGAQDAHEA 347
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
+RPT + R P + LD+D LKLY LIWSR +A QM PA + ++V + ++F +
Sbjct: 348 VRPTSVLRTPEAMEKFLDKDQLKLYRLIWSRFVASQMTPAILDTMKVTLDQ--NGVIFIA 405
Query: 770 SCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ S+++F GF Y E D G KE++EN IL L GD + +E KQH
Sbjct: 406 NGSKIKFKGFMQVYVEGRDDG----KEDKEN-------ILPELVEGDVVQSVSIEPKQHF 454
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPPARYSE +L+K LEE G+GRPSTYA TL+ +Q R YV + + P G +V++ +
Sbjct: 455 TQPPARYSEATLIKTLEENGVGRPSTYAPTLETIQRRYYVKLTQKRFEPTELGEIVNSLI 514
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F ++ D FTA+ME LD++ AG EW ++ ++ F T A+ I +++
Sbjct: 515 EEFFPQIVDMHFTAEMENSLDSIEAGKEEWVKVVDQFYRPFEKELTTAEE-SIEKIQIKD 573
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E D C +CG ++ K+ R+G F C+ P C
Sbjct: 574 EPAGFD------------CDLCGH-PMVIKLGRYGK--FYACSNFPDC 606
>gi|418178277|ref|ZP_12814861.1| DNA topoisomerase I [Streptococcus pneumoniae GA41565]
gi|353845051|gb|EHE25094.1| DNA topoisomerase I [Streptococcus pneumoniae GA41565]
Length = 695
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/650 (39%), Positives = 368/650 (56%), Gaps = 58/650 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ + +
Sbjct: 16 LVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPLI 75
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++K
Sbjct: 76 NDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAVK 130
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 131 NAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDRE 190
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++ +
Sbjct: 191 NEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNNEVKEVLSR 241
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ + G
Sbjct: 242 LTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGSG 301
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAHE 708
GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AHE
Sbjct: 302 V-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAHE 354
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 355 AIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQFA 412
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 413 ANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQHF 456
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+ +
Sbjct: 457 TQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKLI 516
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+ +
Sbjct: 517 VEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEEM 568
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 569 EKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|422874623|ref|ZP_16921108.1| DNA topoisomerase I [Clostridium perfringens F262]
gi|380304264|gb|EIA16553.1| DNA topoisomerase I [Clostridium perfringens F262]
Length = 700
Score = 431 bits (1109), Expect = e-117, Method: Compositional matrix adjust.
Identities = 268/688 (38%), Positives = 378/688 (54%), Gaps = 77/688 (11%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KAK I+ YLG Y V S GHVRDL V +++++ +
Sbjct: 2 GQKLVIVESPAKAKTIEKYLGKNYVVEASMGHVRDLPKSQLGVDIENEYNPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L ++ ++ + LA+DPDREGEAI+WH+ +L+ + +EN R+ F+EIT+
Sbjct: 62 ELLSKLRKLAKKSDKIYLATDPDREGEAISWHLANVLKIDE--NEN---CRIEFNEITKD 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K +++ R+I+ NLV A ARR LD L+G+ ISPLLWR + SAGRVQSAAL LIC
Sbjct: 117 AVKNSIKHPRKINCNLVDAQQARRVLDRLVGYEISPLLWRNVKWGLSAGRVQSAALKLIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI +F P+EYWTV+ L K + SFP LT +K ++ I + +A I
Sbjct: 177 DREEEIKKFNPEEYWTVDVKLKKGKK------SFPVKLT---TKNKKKIEIKNKEQADKI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
++ + ++ K+ KNP P+ TSTLQQ+A+ KLNF TM +AQ+LYEGV+
Sbjct: 228 IDELKENEY-IVSKIKKGTKNKNPLAPFTTSTLQQEASKKLNFMTKKTMSVAQQLYEGVE 286
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GLITYMRTD + IS EA ++ + I E YG + PEE PR Y K KN Q+AH
Sbjct: 287 VKKFGTVGLITYMRTDSVRISKEAQEKALNFIDETYGKEYVPEE-PRVY-KGKKNIQDAH 344
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT + P + L D KLY+LIW R +A QM + ++I N D +
Sbjct: 345 EAIRPTYVEITPEIAKANLSNDQYKLYALIWKRFIASQMATCILNTNSLEIKNGD--YIL 402
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+S S ++F GF YE + E EE+ +L L+ + L +E KQH
Sbjct: 403 RASGSTIKFDGFMKVYEYISG------EEEES------VLLPELEENEVLKEESIEGKQH 450
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE + VK LEE GIGRPSTY T+ L R YV + +IL P G +V+
Sbjct: 451 FTQPPARYSEAAFVKLLEEKGIGRPSTYVPTISTLISRKYVDREKKILIPTELGFIVNDI 510
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
LS+YF ++ D FTA+ME +LDNV AG W ++ ++++ I + EK
Sbjct: 511 LSNYFKQIVDTDFTAEMEVKLDNVEAGKESWTHIVDEFFTPLKE--------DIEKAEKE 562
Query: 948 LEKT------------------------FGDSL----FASLPNK-------DRSCPVCGE 972
+ K FGD L + N D +CP+CG
Sbjct: 563 ISKVIIEDKVSDVPCDKCGRLMVIKHGRFGDFLACPGYPECQNTKPIVEEVDANCPLCG- 621
Query: 973 GTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
G ++ K S+ G F GC+ +P CN+++
Sbjct: 622 GKILVKRSKKG-NRFYGCSNYPECNFVS 648
>gi|149007073|ref|ZP_01830742.1| DNA topoisomerase I [Streptococcus pneumoniae SP18-BS74]
gi|417676998|ref|ZP_12326407.1| DNA topoisomerase I [Streptococcus pneumoniae GA17545]
gi|418155254|ref|ZP_12791983.1| DNA topoisomerase I [Streptococcus pneumoniae GA16242]
gi|419466662|ref|ZP_14006545.1| DNA topoisomerase I [Streptococcus pneumoniae GA05248]
gi|419516885|ref|ZP_14056501.1| DNA topoisomerase I [Streptococcus pneumoniae GA02506]
gi|421298701|ref|ZP_15749389.1| DNA topoisomerase I [Streptococcus pneumoniae GA60080]
gi|147761377|gb|EDK68343.1| DNA topoisomerase I [Streptococcus pneumoniae SP18-BS74]
gi|332074597|gb|EGI85071.1| DNA topoisomerase I [Streptococcus pneumoniae GA17545]
gi|353820632|gb|EHE00815.1| DNA topoisomerase I [Streptococcus pneumoniae GA16242]
gi|379544785|gb|EHZ09929.1| DNA topoisomerase I [Streptococcus pneumoniae GA05248]
gi|379638958|gb|EIA03502.1| DNA topoisomerase I [Streptococcus pneumoniae GA02506]
gi|395902657|gb|EJH13590.1| DNA topoisomerase I [Streptococcus pneumoniae GA60080]
Length = 695
Score = 431 bits (1109), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 369/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|418189495|ref|ZP_12826010.1| DNA topoisomerase I [Streptococcus pneumoniae GA47373]
gi|353856637|gb|EHE36606.1| DNA topoisomerase I [Streptococcus pneumoniae GA47373]
Length = 695
Score = 431 bits (1109), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 369/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|322392029|ref|ZP_08065492.1| DNA topoisomerase TopA [Streptococcus peroris ATCC 700780]
gi|321145127|gb|EFX40525.1| DNA topoisomerase TopA [Streptococcus peroris ATCC 700780]
Length = 695
Score = 431 bits (1109), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 370/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDVENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN T RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDENDT-NRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+I+ +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKINMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ K T F A K++ + ++ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGTFKK------GTKQFQASFFGLNGKKM---KVTTNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 QLTSKDFIVDHVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGT 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA---QEAH 707
G GLITYMRTD IS A E S I ER+GS+++ K+ +VKNA Q+AH
Sbjct: 301 GVQ-GLITYMRTDSTRISPVAQNEAASYITERFGSNYS------KHGSRVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPEKIAKYLDKDQLKLYTLIWNRFVASQMTGAIFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D + L +K GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKNKM----------------LPDMKVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + S+ P G++V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLASKRFEPTDLGQVVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + FTA+ME +LD+V G EW+ ++ +++ FS A++ ++EK+
Sbjct: 516 IVEYFPDIVNVKFTAEMEGKLDDVEVGKEEWQRVIDEFYKPFSKEVAKAEA----EMEKI 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
K C VCG ++ K+ RFG F C+ P C +
Sbjct: 572 QIKDEPAGF---------DCEVCG-SPMVIKIGRFGK--FYACSNFPDCRH 610
>gi|419799405|ref|ZP_14324753.1| DNA topoisomerase I [Streptococcus parasanguinis F0449]
gi|385698089|gb|EIG28475.1| DNA topoisomerase I [Streptococcus parasanguinis F0449]
Length = 695
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 247/652 (37%), Positives = 370/652 (56%), Gaps = 58/652 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I+ YLG Y+V+ S GH+RDL + S+ D+++ +
Sbjct: 14 KNLVIVESPAKAKTIEKYLGRNYKVMASVGHIRDLKKSTMSIDFDNNYEPEYINIRGKGP 73
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ +K A+ + LASDPDREGEAI+WH+ +L DA +N RVVF+EIT+ +
Sbjct: 74 LINDLKKEAKKAKQVFLASDPDREGEAISWHLAHILNL-DAKEKN----RVVFNEITKDA 128
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A + R+ID +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI D
Sbjct: 129 VKNAFKEPRQIDMDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIID 188
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI++FKP+EYWT++ V K T F A K+ + + ++ E K +
Sbjct: 189 RENEINDFKPEEYWTIDGVFKK------GTKQFQASFYGIDGKK---MKLNTNEEVKAVL 239
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++++ +F V K K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 240 ERLDGKDFTVEKVEKKERRRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIG 299
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEA 706
G GLITYMRTD IS A E + I +R+G ++ K+ +VKN AQ+A
Sbjct: 300 SG-VQGLITYMRTDSTRISPVAQNEAANFIVDRFGEKYS------KHGSRVKNASGAQDA 352
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V +G +
Sbjct: 353 HEAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMNVRLGQ--NGVQ 410
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
+ ++ S+V+F G+ A Y D D +L + GD + + +Q
Sbjct: 411 YTANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVEGDIVKQVNSKPEQ 454
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 455 HFTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVKLVAKRFEPTELGEIVNK 514
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ +F ++ + +FTA+ME +LD+V G EW+ ++ ++ FS + + E+
Sbjct: 515 LIVEFFPDIVNVTFTAEMEGKLDDVELGKEEWQKVIDSFYKPFSK--------EVAKAEE 566
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 567 AMEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|331269643|ref|YP_004396135.1| DNA topoisomerase I [Clostridium botulinum BKT015925]
gi|329126193|gb|AEB76138.1| DNA topoisomerase I [Clostridium botulinum BKT015925]
Length = 694
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 256/682 (37%), Positives = 384/682 (56%), Gaps = 65/682 (9%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KAK I YLG Y V S GHVRDL V D+++ +
Sbjct: 2 GQKLVIVESPAKAKTIGKYLGKNYVVTASMGHVRDLPKSQLGVDIDNNYDPRYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ-QQDALHENITVARVVFHEITE 467
L +++ ++ + LA+DPDREGEAI+WH+ E L+ +DA R+ F+EIT+
Sbjct: 62 ELLSTLRKQAKKSDKVFLATDPDREGEAISWHLAEALKIDEDAQ------CRIEFNEITK 115
Query: 468 ASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLI 527
+IK A++ R+++ NLV A ARR LD L+G+ ISP+LWRK+ SAGRVQS AL +I
Sbjct: 116 NAIKAAIKNPRKLNLNLVDAQQARRVLDRLVGYKISPILWRKVKWGLSAGRVQSVALKMI 175
Query: 528 CDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 587
CDRE EI +F+P+EYWT+E L K++S TF + SK ++ I + E+ +
Sbjct: 176 CDREDEISKFEPKEYWTIECELKKQKSQK--TF-----IVKLASKNNKKIDINNEKESTE 228
Query: 588 IEQKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
I +++ ++ ++ N K S K P P+ TST QQD+ KLNFS +M +AQ+LYEG+
Sbjct: 229 IIEELKKGDY-IVDNIKESTKNKKPLPPFTTSTFQQDSYKKLNFSTKKSMSVAQQLYEGI 287
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ GLITYMRTD + I++EA R+ I E +G + P E + FK KN Q+A
Sbjct: 288 DIKGKGTIGLITYMRTDSVRIAEEAQNNARNFIEESFGKEYIPSE--IRNFKGKKNIQDA 345
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT I P + L + K+Y+LIW R MA QM + + + I N + ++
Sbjct: 346 HEAIRPTYIELAPDSIKDNLKPEQYKVYNLIWKRFMASQMSDCVMNTMSIKIKNGEYTL- 404
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
++S S V+F GF+ YE Y+E+E++ + A L+ + L +V+ KQ
Sbjct: 405 -KASGSNVKFDGFKKVYE--------YEEDEDSLKFPA------LEQNEVLIDKKVDGKQ 449
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPAR+SE +LVK LEE GIGRPSTYA + L DR Y+ + + L P G +V+
Sbjct: 450 HFTQPPARFSEATLVKTLEENGIGRPSTYAPIVSTLLDRKYIEREKKTLLPTELGFIVNN 509
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV-- 944
+S YF ++ D FTA+ME++LD++ G +WK ++ +++S A+ I ++
Sbjct: 510 IVSEYFKQIVDVEFTAEMESKLDSIEEGKEKWKDVVDEFYSPLIECIEIAEK-EIAKITI 568
Query: 945 -------------EKMLEK--TFGDSL----FASLPNK-------DRSCPVCGEGTLIFK 978
M+ K FGD L + N D CP+CG G ++ +
Sbjct: 569 EDKVTDVKCDKCGRNMVIKHGRFGDFLACPGYPECKNTKPIVEEIDVPCPLCG-GKILIR 627
Query: 979 VSRFGAGYFIGCNQHPRCNYIA 1000
S+ G ++ GC+ +P C +++
Sbjct: 628 KSKKGRRFY-GCSNYPECKFVS 648
>gi|418976317|ref|ZP_13524198.1| DNA topoisomerase I [Streptococcus mitis SK575]
gi|383351706|gb|EID29482.1| DNA topoisomerase I [Streptococcus mitis SK575]
Length = 695
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++AV K T F A K+ L + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTIDAVFKK------GTKQFQASFYGVDGKK---LKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E + I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAANFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQINSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|419766124|ref|ZP_14292339.1| DNA topoisomerase I [Streptococcus mitis SK579]
gi|383354400|gb|EID31965.1| DNA topoisomerase I [Streptococcus mitis SK579]
Length = 695
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 366/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFISNRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD L + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVLKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDAFYKPFSK--------EVSKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|313892681|ref|ZP_07826264.1| DNA topoisomerase I [Veillonella sp. oral taxon 158 str. F0412]
gi|313442772|gb|EFR61181.1| DNA topoisomerase I [Veillonella sp. oral taxon 158 str. F0412]
Length = 758
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 265/686 (38%), Positives = 371/686 (54%), Gaps = 67/686 (9%)
Query: 344 LYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEV 403
+Y P GK +V+VES K+K I+ +LG Y V S GH+RDL + + DF+ +
Sbjct: 23 VYNPDGKVLVIVESPAKSKTIEKFLGPNYVVKASMGHLRDLPKSQMGIDIEHDFTPRY-- 80
Query: 404 PSAAWTHLKSIKVALSGAEN---LILASDPDREGEAIAWHIVEMLQQQDALHENITVARV 460
S T K I +S A+ ++LA+DPDREGEAI+WH+ +L + + R+
Sbjct: 81 -SNLVTRKKVIDELVSYADESSAVLLATDPDREGEAISWHLAYILNV-----DPTSTCRI 134
Query: 461 VFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQ 520
F+EIT+ ++ AL++ R ID N+V A ARR LD ++G+ +SPLLW+K+ SAGRVQ
Sbjct: 135 TFNEITKNAVAEALESPRTIDMNMVDAQQARRVLDRIVGYKLSPLLWKKVCKGLSAGRVQ 194
Query: 521 SAALSLICDREMEIDEFKPQEYWTVEAVLD--KKESHSLDTFSFPAHLTHFQSKRLNQLS 578
S A+ LIC+RE EI F PQEYWT+E + KKE+ F A LTH + ++++
Sbjct: 195 SVAVRLICEREREIQAFVPQEYWTIEGNFETPKKEA-------FTAELTHIKGEKID--- 244
Query: 579 IGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKL 638
I + +EA+ + I A+ V KR RK P+ TSTLQQD KLNF A TM +
Sbjct: 245 ITTESEAQAVVDAIGGADAVVRNIEKRKRSRKAAPPFTTSTLQQDGVRKLNFGAKRTMMI 304
Query: 639 AQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFK 698
AQ LYEG+++ GLITYMRTD IS E + + I YG + P + P Y
Sbjct: 305 AQHLYEGLEIGSYGHVGLITYMRTDSTRISKEMQETAKDFILRNYGKDYYPSK-PNVYGS 363
Query: 699 KVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI 758
K +AQ+AHEAIRPT + P M+ L D LKLY+LIW+R MA QM P +++
Sbjct: 364 K-GSAQDAHEAIRPTSLELTPKMVEPFLSRDELKLYTLIWNRFMASQMAPQQNESTTIEL 422
Query: 759 GNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLY 818
D+ F+++ SRV F GF A YED + E L +LK D +
Sbjct: 423 TVHDD-YTFKATGSRVIFPGFSAVYEDA--------------KKEDAPQLPALKKNDAAH 467
Query: 819 LGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPE 878
EV +QH TQPP RYSE SL+K LEELGIGRPSTYA L + RNYV ++ P
Sbjct: 468 TVEVLPEQHFTQPPPRYSEASLIKTLEELGIGRPSTYAPILDTIVSRNYVENTNKQFVPT 527
Query: 879 FRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQS 938
G +V FL YF ++ + FT D+E ELD +++G + +L D++ F+ A
Sbjct: 528 ELGFVVVDFLIAYFEKIINTGFTRDLEEELDAIASGKDTYVKVLSDFYEVFAQELEDASD 587
Query: 939 LHIHQVEKM------------LEKTFGD-------SLFASLPNKDR-------SCPVCGE 972
+ ++ M + FG S F N +CP C E
Sbjct: 588 VDRIEIASMESDETCELCNSPMVYKFGRYGKFLACSNFPECKNTKPITVGTGVTCPKCKE 647
Query: 973 GTLIFKVSRFGAGYFIGCNQHPRCNY 998
G ++ + SR G F GCN++P+C++
Sbjct: 648 GEIVERKSRRGR-LFYGCNRYPQCDF 672
>gi|307127147|ref|YP_003879178.1| DNA topoisomerase I [Streptococcus pneumoniae 670-6B]
gi|306484209|gb|ADM91078.1| DNA topoisomerase I [Streptococcus pneumoniae 670-6B]
Length = 695
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 369/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|89098654|ref|ZP_01171536.1| DNA topoisomerase I [Bacillus sp. NRRL B-14911]
gi|89086616|gb|EAR65735.1| DNA topoisomerase I [Bacillus sp. NRRL B-14911]
Length = 691
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 261/645 (40%), Positives = 355/645 (55%), Gaps = 44/645 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GH+RDL V ++ F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVRASMGHIRDLPKSQMGVDVENRFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L +H + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKIYLAADPDREGEAIAWHLAHSLDMD--VHSD---CRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+NISPLLW+K+ SAGRVQS A+ LI DRE
Sbjct: 120 ESFKTPRPINMDLVDAQQARRILDRLVGYNISPLLWKKVKKGLSAGRVQSVAVRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI EF P+EYW+++ K +S F A Q ++ + + S + K+I
Sbjct: 180 KEIKEFIPEEYWSIDGEFLKGKS------VFEASFYSAQGQKTD---LKSEQDVKEILGM 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ F V SK+ R P+ TS+LQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 231 MKGNKFTVASVSKKERKRNPAAPFTTSSLQQEAARKLNFRAKKTMMLAQQLYEGIDLGSE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A E I E YG + P G +K K NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISEIAQTEAAGYITESYGKDYLP--GEKKKETKKSNAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT R PA L L D L+LY LIW R +A QM A + + VD+ N + +VFR++
Sbjct: 349 PTSTLREPASLKEFLSRDQLRLYKLIWERFVASQMASAIMDTMSVDLKNGE--VVFRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y E ++ E +L LK GD + ++E KQH TQP
Sbjct: 407 SKVKFPGFMKVY----------VEGSDDQAEEKDNMLPDLKEGDEVLKKDIEPKQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPST+A TL +Q R YV + ++ P G +V + +
Sbjct: 457 PPRYTEARLVKTLEELGIGRPSTFAPTLDTIQKRGYVALDNKRFIPTELGEIVLELILEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ D FTA ME +LD+V G WK ++ +++ F + A+ + +VE E
Sbjct: 517 FPEILDVEFTAKMEQDLDDVEDGKENWKNIIEEFYKDFEKHLDKAEK-EMQEVEIKDEPA 575
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C CG +++K+ R+G F+ C+ P C
Sbjct: 576 GED------------CEKCGH-EMVYKMGRYGK--FMACSNFPEC 605
>gi|303233748|ref|ZP_07320402.1| DNA topoisomerase I [Finegoldia magna BVS033A4]
gi|302495182|gb|EFL54934.1| DNA topoisomerase I [Finegoldia magna BVS033A4]
Length = 688
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 266/685 (38%), Positives = 370/685 (54%), Gaps = 60/685 (8%)
Query: 348 SGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAA 407
+ K +VVVES TKAK IQ LG Y+V+ + GH+RDL + ++DF +
Sbjct: 2 ANKKLVVVESPTKAKTIQKMLGSGYKVVATIGHLRDLPKSKLGIDIENDFEPQYINVRGK 61
Query: 408 WTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITE 467
+ ++K ++ + LA+DPDREGEAI+WH+ +L + EN RV F EIT+
Sbjct: 62 ANVINALKKDYKNSQKIFLATDPDREGEAISWHLCYLLGI-NPKEEN----RVKFQEITK 116
Query: 468 ASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLI 527
S+K A++ ID LV A ARR LD ++G++ISPLLW+K+ SAGRVQS AL LI
Sbjct: 117 DSVKEAIKKPEAIDLKLVDAQQARRVLDRIVGYSISPLLWKKVKSGLSAGRVQSVALRLI 176
Query: 528 CDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 587
C+RE EI EF+P+EYW++ A L K D F + L + +S + N+++I + EA
Sbjct: 177 CEREKEIREFEPEEYWSIHANLSK------DKLDFDSELYYSKSDKSNKINIKNKDEADK 230
Query: 588 IEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
I + S F V ++ RK P+ TSTLQQ+A KL F + TM++AQ+LYEG+
Sbjct: 231 ILNDL-SDKFVVDSIKQQKKARKPYAPFTTSTLQQEAYKKLYFQTSKTMRIAQQLYEGIS 289
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
L + GLITYMRTD IS + +I E YG +A Y KK K +Q+AH
Sbjct: 290 LGSEGSVGLITYMRTDSTRISQVCVNDCLDIINELYGKQYATR--GYDYSKKKKGSQDAH 347
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
E IRP+ ++R P L L ED KLY LIW RT+A QM+ A +D N F
Sbjct: 348 EGIRPSSVKRRPNELKKYLTEDQYKLYKLIWERTVASQMKDARYLSTSIDFDN--NGYTF 405
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
RS+ + V F GF Y ++ K++E L LK +P+ E+E KQH
Sbjct: 406 RSNGNVVIFDGFTRVY------SLNTKDSE----------LPELKDREPISSNEIEPKQH 449
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+P RY+E SLVK LEE GIGRPSTYAS + + RNYV +K + Y G V F
Sbjct: 450 FTKPKPRYTEASLVKTLEEDGIGRPSTYASIISSILSRNYVELKEKKFYTTEIGEKVCEF 509
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF + + FTA+ME ELDN++ EWK ++ D+++ F+ A+ + K+
Sbjct: 510 VVKYFDSIINEKFTAEMENELDNIAENDVEWKKVIRDFYNGFNEDLVNAK--NAQDKFKV 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
++ G R CP CG L+ K R G FIGC+ P C Y
Sbjct: 568 KDEPIG-----------RKCPECG-NDLVIKHGRNGK--FIGCSAFPECKYT-------- 605
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASK 1032
+T+ ++T V PK GH K
Sbjct: 606 ---ETIVKDTKVKCPKC-GHRIIEK 626
>gi|295696104|ref|YP_003589342.1| DNA topoisomerase I [Kyrpidia tusciae DSM 2912]
gi|295411706|gb|ADG06198.1| DNA topoisomerase I [Kyrpidia tusciae DSM 2912]
Length = 709
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 262/676 (38%), Positives = 363/676 (53%), Gaps = 59/676 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG Y V S GH+RDL V DF + L
Sbjct: 5 LVIVESPAKAKTIGKYLGKGYMVKASMGHIRDLPKSKLGVDIAHDFEPHYITIRGKGDVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+++ A + + LA+DPDREGEAIAWH+ L RVVFHEIT+ +++
Sbjct: 65 KTLRDASKKVKRVYLAADPDREGEAIAWHLANYLDVNPD-----GPCRVVFHEITKQAVQ 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A R ID +LV A ARR LD L+G+ ISPLLW+K+ SAGRVQS AL L+CDRE
Sbjct: 120 EAFAHPRPIDRDLVNAQQARRILDRLVGYKISPLLWKKVRKGLSAGRVQSVALRLVCDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI EFKP+EYWT+ A +D +F A +++ + + E K I +
Sbjct: 180 KEIREFKPEEYWTLTA------RFKVDGRTFEAKFVGVGDQKVE---LANEEEVKAILAR 230
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
I+ +F VI ++S R+NP P + TS+LQQ+AA KLNF A TM +AQ+LYEG+++
Sbjct: 231 ISGQSFTVI-GVRKSERRRNPAPPFTTSSLQQEAARKLNFRAQKTMSVAQQLYEGLEIGK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
+ GLITYMRTD +S A ++ RS + + YG+ PE+ K ++ AQ+AHEA+
Sbjct: 290 EGSVGLITYMRTDSTRVSPVAQEQARSYVEKTYGAAFLPEK--VKQYQTRSGAQDAHEAV 347
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT++ R P + L+ D +LY LIW R +A QM PA + + DI D ++FR++
Sbjct: 348 RPTEVARTPESIKAYLNRDQYRLYKLIWERFVASQMAPAVLDTVSADIQAGD--VLFRAA 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+V+F GF Y E E++ + E L L+ G L +E KQH TQ
Sbjct: 406 GSKVKFPGFMTLY----------VEGEDDAKDEENRDLPDLRQGQELPEPALEPKQHFTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK +EELGIGRPSTYA TL+ +Q R YV ++ R P G +V L
Sbjct: 456 PPPRYTEARLVKTMEELGIGRPSTYAPTLETIQKRGYVLLQERRFVPTELGEVVVELLKE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSL--HIHQV---- 944
+F E+ D FTA ME LD V G W +L +++ F A+ H+H
Sbjct: 516 FFPEIIDVEFTAQMEERLDGVGEGRVNWVEMLEEFYQDFQKQLDLAEQAMQHVHLEEEES 575
Query: 945 --------EKMLEK--TFGDSLFAS-----------LPNKDRSCPVCGEGTLIFKVSRFG 983
+M+ K FG L L + CP CG G L+ + ++ G
Sbjct: 576 DEICEKCGRRMVYKHGRFGKFLACPGFPECRNTKPILKSIGVPCPKCG-GDLVERRAKRG 634
Query: 984 AGYFIGCNQHPRCNYI 999
F GC +P C+++
Sbjct: 635 R-IFYGCKNYPSCDFV 649
>gi|46907502|ref|YP_013891.1| DNA topoisomerase I [Listeria monocytogenes serotype 4b str. F2365]
gi|226223878|ref|YP_002757985.1| DNA topoisomerase I TopA [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|254824664|ref|ZP_05229665.1| DNA topoisomerase I [Listeria monocytogenes FSL J1-194]
gi|254852671|ref|ZP_05242019.1| DNA topoisomerase I [Listeria monocytogenes FSL R2-503]
gi|254932408|ref|ZP_05265767.1| DNA topoisomerase I [Listeria monocytogenes HPB2262]
gi|255520257|ref|ZP_05387494.1| DNA topoisomerase I [Listeria monocytogenes FSL J1-175]
gi|300765311|ref|ZP_07075295.1| DNA topoisomerase I [Listeria monocytogenes FSL N1-017]
gi|386732015|ref|YP_006205511.1| DNA topoisomerase I [Listeria monocytogenes 07PF0776]
gi|404280830|ref|YP_006681728.1| DNA topoisomerase I [Listeria monocytogenes SLCC2755]
gi|404286691|ref|YP_006693277.1| DNA topoisomerase I [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749619|ref|YP_006673085.1| DNA topoisomerase I [Listeria monocytogenes ATCC 19117]
gi|405752494|ref|YP_006675959.1| DNA topoisomerase I [Listeria monocytogenes SLCC2378]
gi|405755405|ref|YP_006678869.1| DNA topoisomerase I [Listeria monocytogenes SLCC2540]
gi|406704048|ref|YP_006754402.1| DNA topoisomerase I [Listeria monocytogenes L312]
gi|424714150|ref|YP_007014865.1| DNA topoisomerase 1 [Listeria monocytogenes serotype 4b str. LL195]
gi|424823040|ref|ZP_18248053.1| DNA topoisomerase 1 [Listeria monocytogenes str. Scott A]
gi|46880770|gb|AAT04068.1| DNA topoisomerase I [Listeria monocytogenes serotype 4b str. F2365]
gi|225876340|emb|CAS05049.1| Putative DNA topoisomerase I TopA [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|258605989|gb|EEW18597.1| DNA topoisomerase I [Listeria monocytogenes FSL R2-503]
gi|293583965|gb|EFF95997.1| DNA topoisomerase I [Listeria monocytogenes HPB2262]
gi|293593903|gb|EFG01664.1| DNA topoisomerase I [Listeria monocytogenes FSL J1-194]
gi|300513994|gb|EFK41057.1| DNA topoisomerase I [Listeria monocytogenes FSL N1-017]
gi|332311720|gb|EGJ24815.1| DNA topoisomerase 1 [Listeria monocytogenes str. Scott A]
gi|384390773|gb|AFH79843.1| DNA topoisomerase I [Listeria monocytogenes 07PF0776]
gi|404218819|emb|CBY70183.1| DNA topoisomerase I [Listeria monocytogenes ATCC 19117]
gi|404221694|emb|CBY73057.1| DNA topoisomerase I [Listeria monocytogenes SLCC2378]
gi|404224605|emb|CBY75967.1| DNA topoisomerase I [Listeria monocytogenes SLCC2540]
gi|404227465|emb|CBY48870.1| DNA topoisomerase I [Listeria monocytogenes SLCC2755]
gi|404245620|emb|CBY03845.1| DNA topoisomerase I [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361078|emb|CBY67351.1| DNA topoisomerase I [Listeria monocytogenes L312]
gi|424013334|emb|CCO63874.1| DNA topoisomerase 1 [Listeria monocytogenes serotype 4b str. LL195]
Length = 692
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/647 (39%), Positives = 361/647 (55%), Gaps = 48/647 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++V S GHVRDL V + D+ + L
Sbjct: 5 LVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTEHDYEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ--QQDALHENITVARVVFHEITEAS 469
K +K A A+ + LA+DPDREGEAIAWH+ L+ Q D L RVVF+EIT+ +
Sbjct: 65 KELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQSDKL-------RVVFNEITKEA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K + + R+ID +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL +I D
Sbjct: 118 VKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIID 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FKP+EYWT++ K + F A+ K+ + + + K++
Sbjct: 178 REKEINNFKPEEYWTIDGNFLKGKK------KFQANFYGVNGKKK---KLSTADDVKEVM 228
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I +F V +K+ +R P+ TS+LQQ+AA KLN+ TM LAQ+LYEG+ L
Sbjct: 229 SAIKGKSFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLG 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E + I E YG + ++ K K AQ+AHEA
Sbjct: 289 KQGTVGLITYMRTDSTRIADSAILEASNYIKETYGPEFS--RNHKRSDKNAKGAQDAHEA 346
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R P + L D L+LY LIW R +A QM PA + ++VD+ N + FR+
Sbjct: 347 IRPTSAMRSPQEVKEFLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDN--NGVNFRA 404
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+++F GF Y + + KEN IL LK GD + +E +QH T
Sbjct: 405 NGSKIKFHGFMKVYVESNDDNTEEKEN----------ILPDLKKGDKVQSESLEQRQHFT 454
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LVK LEE+GIGRPSTY+ TL +Q RNYV++ ++ P G +V+ +
Sbjct: 455 QPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIE 514
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF E+ D FTA+ME+ELD V G EW ++ +++ RF A + + ++E E
Sbjct: 515 EYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKRFEPNVIKADA-EMEKIEIKDE 573
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C +CG +++K+ ++G F+ C++ P C
Sbjct: 574 PAGID------------CDLCG-APMVYKMGKYGK--FLACSRFPDC 605
>gi|253681599|ref|ZP_04862396.1| DNA topoisomerase [Clostridium botulinum D str. 1873]
gi|253561311|gb|EES90763.1| DNA topoisomerase [Clostridium botulinum D str. 1873]
Length = 689
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 258/682 (37%), Positives = 383/682 (56%), Gaps = 65/682 (9%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KAK I YLG Y V S GHVRDL V D++++ +
Sbjct: 2 GQKLVIVESPAKAKTIGKYLGKNYVVTASMGHVRDLPKSQLGVDIDNNYNPRYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ-QQDALHENITVARVVFHEITE 467
L +++ ++ + LA+DPDREGEAI+WH+ E L+ +DA R+ F+EIT+
Sbjct: 62 ELLSTLRKQAKKSDKVFLATDPDREGEAISWHLAEALKIDEDAQ------CRIEFNEITK 115
Query: 468 ASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLI 527
+IK A++ R+++ NLV A ARR LD L+G+ ISP+LWRK+ SAGRVQS AL +I
Sbjct: 116 NAIKAAIKNPRKLNLNLVDAQQARRVLDRLVGYKISPILWRKIKWGLSAGRVQSVALKMI 175
Query: 528 CDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 587
CDRE EI +F+P+EYWT+E L K++S TF + SK ++ I + E+ +
Sbjct: 176 CDREDEISKFEPKEYWTIECQLRKQKSQK--TF-----MVKLASKNNKKIDINNEKESIE 228
Query: 588 IEQKINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
I +++ ++ ++ N K S K P P + TST QQD+ KLNFS +M +AQ+LYEG+
Sbjct: 229 IIEELKKGDY-IVDNIKESTKNKKPLPPFTTSTFQQDSYRKLNFSTKKSMSVAQQLYEGI 287
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ GLITYMRTD + IS+EA R+ I ER+G + P E + FK KN Q+A
Sbjct: 288 DIKGKGTIGLITYMRTDSVRISEEAQNNARNFIKERFGEEYIPSE--IRNFKGKKNIQDA 345
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT I P + L + K+Y+LIW R MA QM + + + I N + +
Sbjct: 346 HEAIRPTYIELTPDSIKDNLRSEQYKVYNLIWKRFMASQMADCIMNTMSIKIKNGE--YI 403
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
++S S V+F GF+ YE Y+E+E++ + L+ + L +V+ KQ
Sbjct: 404 LKASGSNVKFDGFKKVYE--------YEEDEDSLK------FPDLEHNEVLIEKKVDAKQ 449
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPAR+SE +LVK LEE GIGRPSTYA + L DR Y+ + + L P G +V+
Sbjct: 450 HFTQPPARFSEATLVKTLEENGIGRPSTYAPIVSTLLDRKYIEREKKTLLPTELGFIVNN 509
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV-- 944
+S YF ++ D FTA+ME++LDN+ G +WK ++ +++S C I ++
Sbjct: 510 IVSEYFKQIVDVEFTAEMESKLDNIEEGKEKWKDVVDEFYSPLIE-CIEIAEKEIAKITI 568
Query: 945 -------------EKMLEK--TFGDSL----FASLPNK-------DRSCPVCGEGTLIFK 978
M+ K FGD L + N D CP+CG G ++ +
Sbjct: 569 EDKVTDVKCDKCGRNMVIKHGRFGDFLACPGYPECKNTKPIVEEIDVPCPLCG-GKILLR 627
Query: 979 VSRFGAGYFIGCNQHPRCNYIA 1000
S+ G ++ GC+ +P C +++
Sbjct: 628 KSKKGRKFY-GCSNYPECKFVS 648
>gi|419480146|ref|ZP_14019952.1| DNA topoisomerase I [Streptococcus pneumoniae GA19101]
gi|379570717|gb|EHZ35678.1| DNA topoisomerase I [Streptococcus pneumoniae GA19101]
Length = 695
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLTIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + S+ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLASKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|416998948|ref|ZP_11939617.1| DNA topoisomerase I [Veillonella parvula ACS-068-V-Sch12]
gi|333977101|gb|EGL77960.1| DNA topoisomerase I [Veillonella parvula ACS-068-V-Sch12]
Length = 777
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 274/720 (38%), Positives = 381/720 (52%), Gaps = 70/720 (9%)
Query: 312 KKKSAKA--TKASLQRQTSEEMVIVPRGQNTQNPLYPPSGKSVVVVESVTKAKVIQGYLG 369
K+K AK T + R S VP Q +Y P GK +V+VES K+K I+ +LG
Sbjct: 34 KRKVAKEALTPMGIVRDKSVLQTSVPPEQREPR-VYNPDGKVLVIVESPAKSKTIEKFLG 92
Query: 370 DMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAEN---LIL 426
Y V S GH+RDL + + DF+ + S T K I +S A+ ++L
Sbjct: 93 PNYVVKASMGHLRDLPKSQMGIDIEHDFTPRY---SNLVTRKKVIDELVSYADESSAVLL 149
Query: 427 ASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQ 486
A+DPDREGEAI+WH+ +L + R+ F+EIT+ ++ AL+A R ID N+V
Sbjct: 150 ATDPDREGEAISWHLAYILNVDPK-----STCRITFNEITKNAVAEALEAPRTIDMNMVD 204
Query: 487 AYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVE 546
A ARR LD ++G+ +SPLLW+K+ SAGRVQS A+ LIC+RE EI F+PQEYWT++
Sbjct: 205 AQQARRVLDRIVGYKLSPLLWKKVCKGLSAGRVQSVAVRLICEREREIQAFEPQEYWTIK 264
Query: 547 AVLD--KKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSK 604
+ KKE SF A LTH + ++++ I + ++A+ + I + V K
Sbjct: 265 GNFETPKKE-------SFTAELTHIKGEKID---ITTESDAQAVVDAIGGEDAVVTNIEK 314
Query: 605 RSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDG 664
R RK P+ TSTLQQD KLNF A TM +AQ LYEG+++ GLITYMRTD
Sbjct: 315 RKRSRKAAPPFTTSTLQQDGVRKLNFGAKRTMMIAQHLYEGLEIGSYGHVGLITYMRTDS 374
Query: 665 LHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSG 724
IS E + I YG + P + P Y K +AQ+AHEAIRPT + P M+
Sbjct: 375 TRISKEMQVMAKDFILRNYGEEYYPSK-PNVYGSK-GSAQDAHEAIRPTSLELTPKMVEP 432
Query: 725 LLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYE 784
L D LKLY+LIW+R MA QM P +++ N + F+++ SRV F GF A YE
Sbjct: 433 FLSRDELKLYTLIWNRFMASQMAPQQNESTTIEL-NVKDDYTFKATGSRVIFPGFSAVYE 491
Query: 785 DVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKL 844
DV + E L +LK D + EV +QH TQPP RYSE SL+K L
Sbjct: 492 DV--------------KKEDAPQLPALKKNDAAHTVEVLPEQHFTQPPPRYSEASLIKTL 537
Query: 845 EELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADM 904
EELGIGRPSTYA L + RNYV ++ P G +V FL YF ++ + FT D+
Sbjct: 538 EELGIGRPSTYAPILDTIVSRNYVENTNKQFVPTELGFVVVDFLITYFEKIINTGFTRDL 597
Query: 905 ETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM------------LEKTF 952
E ELD +++G + +L D++ F+ A + ++ M + F
Sbjct: 598 EEELDAIASGKDTYVKVLSDFYEVFAQELEDASDVERIEIASMESDEICELCHSPMVYKF 657
Query: 953 GD-------SLFASLPNKDR-------SCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
G S F N CP C +G ++ + SR G F GCN++P+C++
Sbjct: 658 GRYGKFLACSNFPECKNTKPITVGTGVMCPKCKKGEIVERKSRRGR-IFYGCNRYPQCDF 716
>gi|149019256|ref|ZP_01834618.1| DNA topoisomerase I [Streptococcus pneumoniae SP23-BS72]
gi|387626555|ref|YP_006062730.1| DNA topoisomerase I [Streptococcus pneumoniae INV104]
gi|417694174|ref|ZP_12343362.1| DNA topoisomerase I [Streptococcus pneumoniae GA47901]
gi|417698664|ref|ZP_12347836.1| DNA topoisomerase I [Streptococcus pneumoniae GA41317]
gi|418102977|ref|ZP_12740051.1| DNA topoisomerase I [Streptococcus pneumoniae NP070]
gi|419453225|ref|ZP_13993198.1| DNA topoisomerase I [Streptococcus pneumoniae EU-NP03]
gi|419506175|ref|ZP_14045836.1| DNA topoisomerase I [Streptococcus pneumoniae GA49194]
gi|419509843|ref|ZP_14049487.1| DNA topoisomerase I [Streptococcus pneumoniae NP141]
gi|419512610|ref|ZP_14052244.1| DNA topoisomerase I [Streptococcus pneumoniae GA05578]
gi|419530100|ref|ZP_14069631.1| DNA topoisomerase I [Streptococcus pneumoniae GA40028]
gi|421240793|ref|ZP_15697338.1| DNA topoisomerase I [Streptococcus pneumoniae 2080913]
gi|421283411|ref|ZP_15734198.1| DNA topoisomerase I [Streptococcus pneumoniae GA04216]
gi|444382042|ref|ZP_21180247.1| DNA topoisomerase I [Streptococcus pneumoniae PCS8106]
gi|444384513|ref|ZP_21182607.1| DNA topoisomerase I [Streptococcus pneumoniae PCS8203]
gi|147931126|gb|EDK82105.1| DNA topoisomerase I [Streptococcus pneumoniae SP23-BS72]
gi|301794340|emb|CBW36767.1| DNA topoisomerase I [Streptococcus pneumoniae INV104]
gi|332200709|gb|EGJ14781.1| DNA topoisomerase I [Streptococcus pneumoniae GA41317]
gi|332203111|gb|EGJ17179.1| DNA topoisomerase I [Streptococcus pneumoniae GA47901]
gi|353775610|gb|EHD56090.1| DNA topoisomerase I [Streptococcus pneumoniae NP070]
gi|379574840|gb|EHZ39778.1| DNA topoisomerase I [Streptococcus pneumoniae GA40028]
gi|379608089|gb|EHZ72835.1| DNA topoisomerase I [Streptococcus pneumoniae GA49194]
gi|379626934|gb|EHZ91550.1| DNA topoisomerase I [Streptococcus pneumoniae EU-NP03]
gi|379633036|gb|EHZ97605.1| DNA topoisomerase I [Streptococcus pneumoniae NP141]
gi|379637080|gb|EIA01638.1| DNA topoisomerase I [Streptococcus pneumoniae GA05578]
gi|395607171|gb|EJG67268.1| DNA topoisomerase I [Streptococcus pneumoniae 2080913]
gi|395881374|gb|EJG92423.1| DNA topoisomerase I [Streptococcus pneumoniae GA04216]
gi|444252273|gb|ELU58737.1| DNA topoisomerase I [Streptococcus pneumoniae PCS8203]
gi|444253641|gb|ELU60096.1| DNA topoisomerase I [Streptococcus pneumoniae PCS8106]
Length = 695
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|307704925|ref|ZP_07641816.1| DNA topoisomerase I [Streptococcus mitis SK597]
gi|307621539|gb|EFO00585.1| DNA topoisomerase I [Streptococcus mitis SK597]
Length = 695
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 367/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ L + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGVDGKK---LKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|168207947|ref|ZP_02633952.1| DNA topoisomerase I [Clostridium perfringens E str. JGS1987]
gi|169342647|ref|ZP_02863689.1| DNA topoisomerase I [Clostridium perfringens C str. JGS1495]
gi|169299153|gb|EDS81223.1| DNA topoisomerase I [Clostridium perfringens C str. JGS1495]
gi|170660754|gb|EDT13437.1| DNA topoisomerase I [Clostridium perfringens E str. JGS1987]
Length = 700
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 268/688 (38%), Positives = 379/688 (55%), Gaps = 77/688 (11%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KAK I+ YLG Y V S GHVRDL V +++++ +
Sbjct: 2 GQKLVIVESPAKAKTIEKYLGKNYVVEASMGHVRDLPKSQLGVDIENEYNPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L ++ ++ + LA+DPDREGEAI+WH+ +L+ + +EN R+ F+EIT+
Sbjct: 62 ELLSKLRKLAKKSDKIYLATDPDREGEAISWHLANVLKIDE--NEN---CRIEFNEITKD 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K +++ R+I+ NLV A ARR LD L+G+ ISPLLWR + SAGRVQSAAL LIC
Sbjct: 117 AVKNSIKHPRKINCNLVDAQQARRVLDRLVGYEISPLLWRNVKWGLSAGRVQSAALKLIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI +F P+EYWTV+ L K + SFP LT +K ++ I + +A I
Sbjct: 177 DREEEIKKFNPEEYWTVDVKLKKGKK------SFPVKLT---TKNKKKIEIKNKEQADQI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
++ + ++ K+ KNP P+ TSTLQQ+A+ KLNF TM +AQ+LYEGV+
Sbjct: 228 IDELKENEY-IVSKIKKGTKNKNPLAPFTTSTLQQEASKKLNFMTKKTMSVAQQLYEGVE 286
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GLITYMRTD + IS EA ++ + I E YG + PEE PR Y K KN Q+AH
Sbjct: 287 VKKFGTVGLITYMRTDSVRISKEAQEKALNFIDETYGKEYVPEE-PRVY-KGKKNIQDAH 344
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT + P + L D KLY+LIW R +A QM + ++I N D ++
Sbjct: 345 EAIRPTYVEITPEIAKANLSNDQYKLYALIWKRFIASQMATCILNTNSLEIKNGDYTL-- 402
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+S S ++F GF YE + E EE+ +L L+ + L +E KQH
Sbjct: 403 RASGSTIKFDGFMKVYEYISG------EEEES------VLLPELEENEVLKEESIEGKQH 450
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE + VK LEE GIGRPSTY T+ L R YV + +IL P G +V+
Sbjct: 451 FTQPPARYSEAAFVKLLEEKGIGRPSTYVPTISTLISRKYVDREKKILIPTELGFIVNDI 510
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
LS+YF ++ D FTA+ME +LDNV AG W ++ ++++ I + EK
Sbjct: 511 LSNYFKQIVDTDFTAEMEVKLDNVEAGKESWTHIVDEFFTPLKE--------DIEKAEKE 562
Query: 948 LEKT------------------------FGDSL----FASLPNK-------DRSCPVCGE 972
+ K FGD L + N D +CP+CG
Sbjct: 563 ISKVIIEDKVSDVPCDKCGRLMVIKHGRFGDFLACPGYPECQNTKPIVEEVDANCPLCG- 621
Query: 973 GTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
G ++ K S+ G F GC+ +P CN+++
Sbjct: 622 GKILVKRSKKG-NRFYGCSNYPECNFVS 648
>gi|304436895|ref|ZP_07396859.1| DNA topoisomerase TopA [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304370094|gb|EFM23755.1| DNA topoisomerase TopA [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 776
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 267/680 (39%), Positives = 362/680 (53%), Gaps = 60/680 (8%)
Query: 347 PSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSA 406
P K +V+VES KAK I+ +LG Y V S GH+RDL + + +F +
Sbjct: 42 PQKKILVIVESPAKAKTIERHLGKQYTVRASMGHLRDLPKSQFGIDVEHNFEPKYINVRG 101
Query: 407 AWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEIT 466
++++K A+ + LASDPDREGEAIAWH+ +L A T R+VFHEIT
Sbjct: 102 KGDLIRALKKEAKDADKIYLASDPDREGEAIAWHLAHILGVDPA-----TDCRIVFHEIT 156
Query: 467 EASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSL 526
+ +I+ A+ R I V A ARR LD ++G+ +SPLLWRK+ SAGRVQS + L
Sbjct: 157 KPAIEEAVHHPRPIHMAQVDAQQARRMLDRIVGYQLSPLLWRKVRKGLSAGRVQSVTVRL 216
Query: 527 ICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAK 586
+CDRE EI+ F+ +EYWTVEA L K D +F A +TH K+L ++ S E K
Sbjct: 217 VCDREREIEAFQSEEYWTVEAKLKK------DKHAFIAEVTHAHGKKL---ALHSEAETK 267
Query: 587 DIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ + F V + + +K P+ TS+LQQDAA KL F++ TM +AQ+LYEGV
Sbjct: 268 ALTDDLAQQKFSVQEVKRSERRKKAAPPFTTSSLQQDAARKLGFTSGRTMMIAQQLYEGV 327
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L A GLITYMRTD IS+ A E RS + E YG + P P Y K AQ+A
Sbjct: 328 VLGRHGATGLITYMRTDSTRISNLAVDEARSFLSEEYGKEYVPSR-PNVYAMG-KKAQDA 385
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT I R PA + L+ D L+LY+LIW R A QM A I I D +
Sbjct: 386 HEAIRPTSILRTPAEVENYLNRDQLRLYTLIWQRFAASQMSAAVYDTIAAQIAAGDYRL- 444
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
R+ S+++F G+ A Y GA E + E +L L GDPL LG + +Q
Sbjct: 445 -RAHGSKLKFKGYTAVY----VGA-------ETAKKEKDTLLPDLVDGDPLTLGALNPEQ 492
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP RY++ S+VK LEELGIGRPSTYA ++ +Q R YV + + P G +V+
Sbjct: 493 HFTEPPPRYNDASIVKTLEELGIGRPSTYAPIIETIQKRGYVERREKQFRPTELGFIVTD 552
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
L YF + D FTA++E ELD V+ G + LL ++ F A+ I VE
Sbjct: 553 MLEEYFKNIVDVKFTANLEGELDGVADGTLDKNELLGSFYKPFEQTLKKAEDA-IGTVEL 611
Query: 947 MLEKT-----------------FGDSLFAS-----------LPNKDRSCPVCGEGTLIFK 978
E T FG L L + +CP CG G ++ +
Sbjct: 612 PEEVTDIPCDKCGRMMVVKQGRFGKFLACPGFPECRNAKPLLRDTGVACPKCG-GRIVER 670
Query: 979 VSRFGAGYFIGCNQHPRCNY 998
SR G +F GC+++P C+Y
Sbjct: 671 KSRRGRAFF-GCDRYPECDY 689
>gi|300854486|ref|YP_003779470.1| DNA topoisomerase I [Clostridium ljungdahlii DSM 13528]
gi|300434601|gb|ADK14368.1| DNA topoisomerase I [Clostridium ljungdahlii DSM 13528]
Length = 702
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 261/680 (38%), Positives = 378/680 (55%), Gaps = 59/680 (8%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KAK I YLG Y V S GHVRDL V D++++ +
Sbjct: 2 GQKLVIVESPAKAKTIGKYLGKNYVVKASMGHVRDLPKSQLGVDIDNEYTPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L ++ +E + LA+DPDREGEAI+WH+ L+ L EN R+ FHEIT+
Sbjct: 62 ELLDKLRKEAKKSEKVYLATDPDREGEAISWHLSHALK----LDEN-EKCRIEFHEITKN 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K ++++AR I+ NLV A ARR LD L+G+ ISP+LWRK+ SAGRVQS AL +IC
Sbjct: 117 AVKSSIKSARLININLVNAQQARRVLDRLVGYKISPILWRKIKWGLSAGRVQSVALKMIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
+RE +I +F PQEYWT+E L K+ ++ F LT F K++ IGS E I
Sbjct: 177 EREKKIVDFVPQEYWTIECELHKEN----ESKCFNVKLTTFNKKKI---EIGSKDEVDKI 229
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+++ F ++K+ K + + P P + TSTLQQDA KLNFS TM +AQ++YEGV
Sbjct: 230 IEELKQGQF-IVKSIKNTNKNRTPLPPFTTSTLQQDAYKKLNFSTKRTMSIAQQIYEGVD 288
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GLITYMRTD + I+ EA + R + ++G + EE PR FK KN Q+AH
Sbjct: 289 IKGYGTIGLITYMRTDSVRIAQEAQEACRDFVANKFGKEYI-EEKPRN-FKSKKNIQDAH 346
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT++ P + L + KLY+LIW+R +A QM + +DI N++ +
Sbjct: 347 EAIRPTNVEITPEIAKENLKPEQYKLYNLIWNRFVASQMSSCQIDVKSIDIVNSNYGL-- 404
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
+ S SR++F GF Y +Y EE ++ L L+ G+ L ++ KQH
Sbjct: 405 KVSGSRIKFDGFMKVY--------KYATEEE----KSDISLPKLEEGEKLLRKSIDGKQH 452
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPAR+SE SLVK LEE GIGRPSTYA L L DR Y+ + + L P G +V+
Sbjct: 453 FTQPPARFSEASLVKTLEENGIGRPSTYAPILSTLLDRKYIQREKKTLIPTELGDIVNNI 512
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQ------SLHI 941
+S YF +V D FTA ME++LD+V G +W+ ++ +++ A+ ++
Sbjct: 513 VSQYFKQVVDVEFTAAMESKLDSVEDGKDDWRKVVGEFYEPLKKSIEIAEKEVARITIED 572
Query: 942 HQVEKMLEKT----------FGDSL----FASLPNK-------DRSCPVCGEGTLIFKVS 980
+ +K FGD L + N D CP C +G ++ K S
Sbjct: 573 KVTDIKCDKCGRNMVIKHGRFGDFLACPGYPECKNTKPIVEELDVKCPKC-QGKVLIKRS 631
Query: 981 RFGAGYFIGCNQHPRCNYIA 1000
R G ++ GC+ +P C++++
Sbjct: 632 RKGRKFY-GCSNYPDCDFVS 650
>gi|182416694|ref|ZP_02948095.1| DNA topoisomerase I [Clostridium butyricum 5521]
gi|237667675|ref|ZP_04527659.1| DNA topoisomerase [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182379456|gb|EDT76949.1| DNA topoisomerase I [Clostridium butyricum 5521]
gi|237656023|gb|EEP53579.1| DNA topoisomerase [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 697
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/649 (38%), Positives = 367/649 (56%), Gaps = 48/649 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KAK I YLG Y V S GHVRDL V ++++ +
Sbjct: 2 GQKLVIVESPAKAKTIGKYLGKNYIVEASMGHVRDLPKSKLGVDIENNYEPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+ ++ A ++ + LA+DPDREGEAI+WH+ +L+ + E+ T R+VF+E+T++
Sbjct: 62 ELIDKLRKAAKKSDKVYLATDPDREGEAISWHLANILK----ISEDET-CRIVFNEVTKS 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K +++ AR+I+ NLV A ARR LD L+G+ ISP+LW+ + SAGRVQSAAL LIC
Sbjct: 117 AVKASIKEARKINLNLVDAQQARRVLDRLVGYEISPILWKNVKWGLSAGRVQSAALKLIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI EF P+EYW+V+ VL K+ FP L+ +++K+ + + + + +
Sbjct: 177 DREKEIKEFIPKEYWSVDCVLKKERKK------FPIRLSTYKNKK---VELTNEEDCNKV 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+ +N+ F V+K+ K+ +NP P+ TSTLQQDA KLNF+ TM +AQ LYEGV+
Sbjct: 228 IEDLNNGTF-VVKSIKKGKKTRNPLPPFTTSTLQQDANKKLNFNTKRTMSVAQVLYEGVE 286
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GLITYMRTD + IS+EA + + I E +G + PE + +K KN Q+AH
Sbjct: 287 VKGHGTVGLITYMRTDSVRISEEAQGKAKEFIEESFGKEYLPE--TTRIYKGKKNIQDAH 344
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT I P + L + KLYSLIW R +A QM T+ +DI N D F
Sbjct: 345 EAIRPTYIEITPEIAKENLTPEQHKLYSLIWKRFVASQMASCTLNTNSIDILNGDYK--F 402
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++S S ++F GF YE + E++EN L SL+ + L +E QH
Sbjct: 403 KASGSVIDFDGFMKIYEYTN-------EDDENS-----VTLPSLEENEELKTASLEGSQH 450
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQP RY+E S VK LEE GIGRPSTY T+ + RNYV + + L P G +V+
Sbjct: 451 FTQPAPRYTEASFVKLLEEKGIGRPSTYVPTIATILGRNYVVREKKTLIPTELGEIVNNI 510
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
LS YF ++ D FTADME +LD+V G W+ ++ +++S I + EK
Sbjct: 511 LSEYFRQIVDADFTADMERKLDDVEVGNENWREIVSEFFSPLQE--------AIDKAEKE 562
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ K + + D C CG ++ K R+G F+ C +P C
Sbjct: 563 ISKVVIEDKVS-----DVKCEKCGR-MMVIKRGRYGE--FLACPGYPEC 603
>gi|418121303|ref|ZP_12758247.1| DNA topoisomerase I [Streptococcus pneumoniae GA44194]
gi|353793205|gb|EHD73574.1| DNA topoisomerase I [Streptococcus pneumoniae GA44194]
Length = 695
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 369/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAYILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|239826604|ref|YP_002949228.1| DNA topoisomerase I [Geobacillus sp. WCH70]
gi|239806897|gb|ACS23962.1| DNA topoisomerase I [Geobacillus sp. WCH70]
Length = 691
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/646 (40%), Positives = 360/646 (55%), Gaps = 46/646 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V ++ + + +
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDINNGYEPKYITIRGKGPII 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ ML +H + RVVF+EIT+ ++K
Sbjct: 65 KELKTAAKKAKKVFLAADPDREGEAIAWHLANMLDLD--IHSD---CRVVFNEITKDAVK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ Q R I+ NLV A ARR LD L+G+NISPLLW+K+ SAGRVQS AL LI DRE
Sbjct: 120 ESFQHPRPINMNLVDAQQARRVLDRLVGYNISPLLWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI +F+P+EYWT++A K +TF+ F +L + + I Q+
Sbjct: 180 KEIKQFQPEEYWTIQAEFVKGN----ETFT-----ASFYGVDGQKLELKKEADVAAILQR 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
IN +F V +K+ R P+ TS+LQQ+AA KLNF TM +AQ+LYEG+ L
Sbjct: 231 INGNHFTVTSVAKKERKRNPVPPFTTSSLQQEAARKLNFRTKKTMMIAQQLYEGIDLGSE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD +S+ A +E S I +G +E ++ KK NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRVSESARQEALSYIEATFGKEFVAQEKRKE--KKNANAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT R P + L D +LY LIW R +A QM A + + +++ N E ++FR+S
Sbjct: 349 PTSAFREPEKVKPYLTRDQFRLYKLIWERFIASQMAAALLDTMSIELEN--EGVIFRASG 406
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+V+F GF Y E D + +E DR +L L+ G+ ++ ++E KQH TQ
Sbjct: 407 SKVKFPGFMKVYVEGTD------DQTDEQDR-----LLPDLQEGETVFSKDIEPKQHFTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEELGIGRPSTYA TL +Q RNYV ++++ P G +V +
Sbjct: 456 PPPRYTEARLVKTLEELGIGRPSTYAPTLDTIQKRNYVVLENKRFVPTELGEIVLELMLE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F E+ D FTA ME LD + G EW ++ +++ F A+ + +VE E
Sbjct: 516 FFPEIIDVEFTAKMEKNLDEIEEGKVEWVKVVDEFYQEFEKRLQTAEK-EMKEVEIKDEP 574
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C VCG +++K+ RFG F+ C+ P C
Sbjct: 575 AGVD------------CEVCG-SPMVYKMGRFGK--FVACSNFPEC 605
>gi|449094304|ref|YP_007426795.1| DNA topoisomerase I [Bacillus subtilis XF-1]
gi|449028219|gb|AGE63458.1| DNA topoisomerase I [Bacillus subtilis XF-1]
Length = 693
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 265/677 (39%), Positives = 371/677 (54%), Gaps = 58/677 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 7 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 66
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L L N + RVVF+EIT+ +IK
Sbjct: 67 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLD----LDLN-SDCRVVFNEITKDAIK 121
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 122 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 181
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++FKP+EYWT++ K + +TF F K +L + S + K+I +
Sbjct: 182 KEINDFKPEEYWTIDGTFLKGQ----ETFE-----ASFFGKNGKKLPLNSEADVKEILSQ 232
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 233 LKGNQYTVEKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGRE 292
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A E + I + YG G RK KK +NAQ+AHEAIR
Sbjct: 293 GTVGLITYMRTDSTRISNTAVDEAAAFIDQTYGKEFLG--GKRKPAKKNENAQDAHEAIR 350
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R P+ L +L D ++LY LIW R +A QM PA + + VD+ N + FR++
Sbjct: 351 PTSVLRKPSELKAVLGRDQMRLYKLIWERFVASQMAPAVLDTMSVDLTN--NGLTFRANG 408
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y + + EE DR +L L+ GD + ++E +QH QP
Sbjct: 409 SKVKFSGFMKVYVEGKDDQM-----EEKDR-----MLPDLQEGDTVLSKDIEPEQHFPQP 458
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEE GIGRPSTYA TL +Q R YV + ++ P G++V + +
Sbjct: 459 PPRYTEARLVKTLEERGIGRPSTYAPTLDTIQRRGYVALDNKRFVPTELGQIVLDLIMEF 518
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LD+V G TEW ++ ++++ F A+S + +VE E
Sbjct: 519 FPEIINVEFTAKMERDLDHVEEGNTEWVKIIDNFYTDFEKRVKKAES-EMKEVEIEPEYA 577
Query: 952 FGDSLFASLPNKDR----------------------------SCPVCGEGTLIFKVSRFG 983
D S P + CP CGEG ++ + S+
Sbjct: 578 GEDCELCSSPMVYKMGRYGKFLACSNFPDCRNTKPIVKQIGVKCPSCGEGNIVERKSK-K 636
Query: 984 AGYFIGCNQHPRCNYIA 1000
F GC+++P C +++
Sbjct: 637 KRVFYGCDRYPDCEFVS 653
>gi|421274980|ref|ZP_15725810.1| DNA topoisomerase I [Streptococcus pneumoniae GA52612]
gi|395874091|gb|EJG85179.1| DNA topoisomerase I [Streptococcus pneumoniae GA52612]
Length = 695
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 369/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPIELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|303228932|ref|ZP_07315742.1| DNA topoisomerase I [Veillonella atypica ACS-134-V-Col7a]
gi|302516346|gb|EFL58278.1| DNA topoisomerase I [Veillonella atypica ACS-134-V-Col7a]
Length = 772
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/686 (37%), Positives = 373/686 (54%), Gaps = 67/686 (9%)
Query: 344 LYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEV 403
+Y P GK +V+VES K+K I+ +LG Y V S GH+RDL + D DF+ +
Sbjct: 60 VYNPDGKILVIVESPAKSKTIEKFLGPNYIVKASMGHLRDLPKSQMGIDIDHDFTPRYSN 119
Query: 404 PSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV---ARV 460
A + + + ++LA+DPDREGEAI+WH+ +L N+ + R+
Sbjct: 120 LVARKKVIDDLVAHADESSAVLLATDPDREGEAISWHLAYIL--------NVDITSNCRI 171
Query: 461 VFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQ 520
F+EIT+ ++ AL+ R +D N+V A ARR LD ++G+ +SPLLW+K+ SAGRVQ
Sbjct: 172 TFNEITKTAVAEALEHPRTVDMNMVDAQQARRVLDRIVGYKLSPLLWKKVCKGLSAGRVQ 231
Query: 521 SAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIG 580
S A+ LIC+RE EI F PQEYW++E K + F A LTH + +L+ I
Sbjct: 232 SVAVRLICEREREIQAFVPQEYWSIEGQFKTKTNEE-----FSAELTHVKGDKLD---IT 283
Query: 581 SHTEAKDIEQKI--NSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKL 638
+A I++ I ++A +K SKRS RK P+ TSTLQQD KLNF A TM +
Sbjct: 284 CEADAVAIQKAIADHTATVTSVKKSKRS--RKPAPPFTTSTLQQDGVRKLNFGAKRTMMI 341
Query: 639 AQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFK 698
AQ LYEG+++ GLITYMRTD IS + ++ R I YG + P + P Y K
Sbjct: 342 AQHLYEGLEIGSYGHVGLITYMRTDSTRISKDMQEQARDYIKRTYGDDYCPAK-PNVYGK 400
Query: 699 KVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI 758
K ++AQ+AHEAIRPT + P M+ ++ D LKLY+LIW+R MA QM P +++
Sbjct: 401 K-ESAQDAHEAIRPTSLELTPKMVEPFVNRDELKLYTLIWNRFMASQMAPQQNESTTIEL 459
Query: 759 GNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLY 818
+ D++ F+++ SRV F GF YED + E L +LK D +
Sbjct: 460 -DIDDTYTFKATGSRVLFPGFSTVYED--------------SKKEDTPQLPALKKSDVVE 504
Query: 819 LGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPE 878
++ +QH TQPPARYSE SL+K LEELGIGRPSTYA + + RNYV ++ P
Sbjct: 505 TVLIDPEQHFTQPPARYSEASLIKTLEELGIGRPSTYAPIIDTIVSRNYVETNNKQFIPT 564
Query: 879 FRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQS 938
G +V FL YF ++ + FTA++E ELD ++ G + +L D+++ F A
Sbjct: 565 ELGFVVVDFLVAYFEKIINTGFTAELEEELDAIANGKDTYVKVLTDFYNIFKQELDDASD 624
Query: 939 LHIHQVEKM------------LEKTFGD-------SLFASLPNKD-------RSCPVCGE 972
+ Q+ M + FG S F N +CP CGE
Sbjct: 625 VDKIQIAFMESDETCELCGHPMVYKFGRYGKFLACSNFPECKNTKPITVGTGVACPKCGE 684
Query: 973 GTLIFKVSRFGAGYFIGCNQHPRCNY 998
G ++ + S+ G F GCN++P+C++
Sbjct: 685 GEIVERKSKRGR-IFYGCNRYPQCDF 709
>gi|415886561|ref|ZP_11548341.1| DNA topoisomerase I [Bacillus methanolicus MGA3]
gi|387587248|gb|EIJ79571.1| DNA topoisomerase I [Bacillus methanolicus MGA3]
Length = 691
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 257/649 (39%), Positives = 366/649 (56%), Gaps = 52/649 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + ++ + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEHNYEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV---ARVVFHEITEA 468
K +K A A+ + LA+DPDREGEAIAWH+ L +I + RVVF+EIT+
Sbjct: 65 KDLKTAAKKAKKIFLAADPDREGEAIAWHLAHSL--------DIDINSDCRVVFNEITKD 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+IK + + R I+ +LV A ARR LD L+G+NISPLLW+K+ SAGRVQS AL LI
Sbjct: 117 AIKESFKHPRPINMDLVDAQQARRVLDRLVGYNISPLLWKKVKKGLSAGRVQSVALRLII 176
Query: 529 DREMEIDEFKPQEYWTVEA-VLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 587
DRE EI EF P+EYWT+ A L +KE+ F A + K++ + + E ++
Sbjct: 177 DREKEIKEFVPEEYWTIGAKFLKEKEA-------FEASFYGIEGKKVE---LRTEEEVQN 226
Query: 588 IEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+ ++I F+V +K+ R P+ TS+LQQ+AA KLNF A TM LAQ+LYEG+
Sbjct: 227 VLKQIKGDTFKVTSVTKKERKRNPAPPFTTSSLQQEAARKLNFRAKKTMMLAQQLYEGID 286
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
L GLITYMRTD + +SD A E I +G + EE ++ KK NAQ+AH
Sbjct: 287 LGKEGTVGLITYMRTDSIRVSDVAQSEASQYIENVFGKEYLQEEKRKE--KKQSNAQDAH 344
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT R P+ + L D +LY LIW R +A QM PA + + VD+ N D ++F
Sbjct: 345 EAIRPTSTLRDPSSVKEFLTRDQFRLYKLIWERFVASQMAPAVMDTMSVDLKNGD--VLF 402
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S+++F GF Y + KEN +L L GD + +++ KQH
Sbjct: 403 RATGSKIKFSGFMKVYVEGTDDQTEEKEN----------MLPDLAEGDEVLKIDIDPKQH 452
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RY+E LVK LEELGIGRPSTYA TL +Q R YV+++++ P G +V
Sbjct: 453 FTQPPPRYTEARLVKTLEELGIGRPSTYAPTLDTIQKRGYVSLENKRFVPTELGEIVLDL 512
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ +F ++ D FTA ME +LD++ G +W ++ +++ F++ H+ + E+
Sbjct: 513 ILEFFPDILDVEFTAKMEKDLDDIELGKVKWVKIIDEFYRDFAT--------HLEKAEQE 564
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+EK A + C VCG +++K+ RFG F+ C+ P C
Sbjct: 565 MEKVEIKDEPAGV-----DCDVCG-SPMVYKMGRFGK--FMACSDFPDC 605
>gi|419475637|ref|ZP_14015477.1| DNA topoisomerase I [Streptococcus pneumoniae GA14688]
gi|379561182|gb|EHZ26203.1| DNA topoisomerase I [Streptococcus pneumoniae GA14688]
Length = 695
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/650 (39%), Positives = 367/650 (56%), Gaps = 58/650 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ + +
Sbjct: 16 LVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPLI 75
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++K
Sbjct: 76 NDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAVK 130
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 131 NAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDRE 190
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++ +
Sbjct: 191 NEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLSR 241
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ + G
Sbjct: 242 LTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGSG 301
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAHE 708
GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AHE
Sbjct: 302 V-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAHE 354
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 355 AIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQFA 412
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 413 ANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQHF 456
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+ +
Sbjct: 457 TQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKLI 516
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+ +
Sbjct: 517 VEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEEM 568
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 569 EKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|294791909|ref|ZP_06757057.1| DNA topoisomerase [Veillonella sp. 6_1_27]
gi|294457139|gb|EFG25501.1| DNA topoisomerase [Veillonella sp. 6_1_27]
Length = 746
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 265/686 (38%), Positives = 370/686 (53%), Gaps = 67/686 (9%)
Query: 344 LYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEV 403
+Y P GK +V+VES K+K I+ +LG Y V S GH+RDL + + DF+ +
Sbjct: 23 VYNPDGKVLVIVESPAKSKTIEKFLGPNYVVKASMGHLRDLPKSQMGIDIEHDFTPRY-- 80
Query: 404 PSAAWTHLKSIKVALSGAEN---LILASDPDREGEAIAWHIVEMLQQQDALHENITVARV 460
S T K I +S A+ ++LA+DPDREGEAI+WH+ +L + + R+
Sbjct: 81 -SNLVTRKKVIDELVSYADESSAVLLATDPDREGEAISWHLAYILNV-----DPTSTCRI 134
Query: 461 VFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQ 520
F+EIT+ ++ AL + R ID N+V A ARR LD ++G+ +SPLLW+K+ SAGRVQ
Sbjct: 135 TFNEITKNAVAEALGSPRTIDMNMVDAQQARRVLDRIVGYKLSPLLWKKVCKGLSAGRVQ 194
Query: 521 SAALSLICDREMEIDEFKPQEYWTVEAVLD--KKESHSLDTFSFPAHLTHFQSKRLNQLS 578
S A+ LIC+RE EI F PQEYWT+E + KKE+ F A LTH + ++++
Sbjct: 195 SVAVRLICEREREIQAFVPQEYWTIEGNFETPKKEA-------FTAELTHIKGEKID--- 244
Query: 579 IGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKL 638
I + ++A+ I I + + V KR RK P+ TSTLQQD KLNF A TM +
Sbjct: 245 ITTESDAQAIVDAIGNEDAVVTNIEKRKRSRKAAPPFTTSTLQQDGVRKLNFGAKRTMMI 304
Query: 639 AQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFK 698
AQ LYEG+++ GLITYMRTD IS E + I YG + P + P Y
Sbjct: 305 AQHLYEGLEIGSYGHVGLITYMRTDSTRISKEMQAMAKDFILRNYGEDYYPSK-PNVYGS 363
Query: 699 KVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI 758
K +AQ+AHEAIRPT + P M+ L D LKLY+LIW+R MA QM P +++
Sbjct: 364 K-GSAQDAHEAIRPTSLELTPKMVEPFLSRDELKLYTLIWNRFMASQMAPQQNESTTIEL 422
Query: 759 GNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLY 818
N + F+++ SRV F GF A YEDV + E L +LK D +
Sbjct: 423 -NVKDDYTFKATGSRVIFPGFSAVYEDV--------------KKEDAPQLPALKKNDAAH 467
Query: 819 LGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPE 878
EV +QH TQPP RYSE SL+K LEELGIGRPSTYA L + RNYV ++ P
Sbjct: 468 TVEVLPEQHFTQPPPRYSEASLIKTLEELGIGRPSTYAPILDTIVSRNYVENTNKQFVPT 527
Query: 879 FRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQS 938
G +V FL YF ++ + FT D+E ELD +++G + +L D++ F+ A
Sbjct: 528 ELGFVVVDFLITYFEKIINTGFTRDLEEELDAIASGKDTYVKVLSDFYEVFAQELEDASD 587
Query: 939 LHIHQVEKM------------LEKTFGD-------SLFASLPNKDR-------SCPVCGE 972
+ ++ M + FG S F N +CP C E
Sbjct: 588 VDRIEIASMESDEICELCHSPMVYKFGRYGKFLACSNFPECKNTKPITVGTGVTCPKCKE 647
Query: 973 GTLIFKVSRFGAGYFIGCNQHPRCNY 998
G ++ + SR G F GCN++P+C++
Sbjct: 648 GEIVERKSRRGR-IFYGCNRYPQCDF 672
>gi|295093363|emb|CBK82454.1| DNA topoisomerase I [Coprococcus sp. ART55/1]
Length = 708
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/683 (37%), Positives = 376/683 (55%), Gaps = 65/683 (9%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES KAK I+ +LG YEV+ S GHVRDL + D+DF +
Sbjct: 16 AKNLVIVESPAKAKTIKKFLGSNYEVIASNGHVRDLPKSQMGIDVDNDFEPKYITIRGKG 75
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L +++ A+ A+ + LA+DPDREGEAI++H+++ L+ EN R+ F+EIT+
Sbjct: 76 DILAALRKAVKKADKIYLATDPDREGEAISYHLMKALK-----LENKDYKRITFNEITKN 130
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K +++ AR+ID NLV A ARR LD L+G+ ISP+LW K+ SAGRVQS AL L+C
Sbjct: 131 AVKNSIKQARDIDMNLVDAQQARRVLDRLVGYKISPVLWAKIKRGLSAGRVQSVALKLVC 190
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI++F PQEYWT++A L + TF F N+ I +I
Sbjct: 191 DREKEINDFIPQEYWTLDANLTGGKLKKPITFKFTGDGK-------NKEEISGRAALDEI 243
Query: 589 EQKINSANFQV--IKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ + V IK S+R+ +K P P+ TSTLQQ+A++KLNF+ + TM++AQ+LYEGV
Sbjct: 244 LSGLQDGEYVVKSIKESERN--KKAPLPFTTSTLQQEASSKLNFATSKTMRIAQQLYEGV 301
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+ GLITY+RTD IS+EA I + +G + + R K K Q+A
Sbjct: 302 DIKGRGTIGLITYLRTDSTRISEEAVAAADKYITDNFGEIYIGDSNGRA--KTDKKIQDA 359
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPA--TVGQIQVDIGNADES 764
HEAIRPTD+ P M+ L D +LY LI++R +A QM A +V ++V G+A
Sbjct: 360 HEAIRPTDVTLSPVMVKEQLSRDQFRLYQLIYNRFLASQMAGAVYSVKSVKVSCGDA--- 416
Query: 765 IVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVEL 824
F++S S++ F GF A Y N +NDR E A +N+L GD L L E
Sbjct: 417 -TFQTSASKIAFDGFLAVY------------NLDNDRGETVAGINNLAEGDVLELDGFEE 463
Query: 825 KQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMV 884
KQH TQPPARY+E LVK LEELGIGRPSTYA T+ + R Y+T + + LY G V
Sbjct: 464 KQHFTQPPARYTEALLVKTLEELGIGRPSTYAPTISTILARRYITKEQKKLYVTAIGDAV 523
Query: 885 SAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQS-LHIHQ 943
+ + F + D +FTA+ME+ LD + G +WK ++ +++ A++ L +
Sbjct: 524 NQSMEQAFPVIIDVNFTANMESLLDKIGEGTVDWKVVVRNFYPDLDEAVKKAEAELESIK 583
Query: 944 VEKMLEKTFGDSL-------------FASLPNKDR-------------SCPVCGEGTLIF 977
+E + + D F + P +CP CG G ++
Sbjct: 584 IEDEVSEEVCDVCGRNMVIKYGPHGKFLACPGFPECRFTKPFYEKIGVTCPKCG-GDVVI 642
Query: 978 KVSRFGAGYFIGCNQHPRCNYIA 1000
K +R G Y+ GC P C++++
Sbjct: 643 KTTRKGRRYY-GCINAPECDFMS 664
>gi|307708808|ref|ZP_07645270.1| DNA topoisomerase I [Streptococcus mitis NCTC 12261]
gi|307615174|gb|EFN94385.1| DNA topoisomerase I [Streptococcus mitis NCTC 12261]
Length = 695
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 367/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ L + S+ E K++
Sbjct: 190 ENEINVFQPEEYWTIDGVFKK------GTKQFQASFYGVDGKK---LKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|365845441|ref|ZP_09386212.1| DNA topoisomerase I [Flavonifractor plautii ATCC 29863]
gi|364560280|gb|EHM38222.1| DNA topoisomerase I [Flavonifractor plautii ATCC 29863]
Length = 771
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/652 (38%), Positives = 360/652 (55%), Gaps = 50/652 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG YEV S GHVRDL V + F + ++ +
Sbjct: 1 MVIVESPAKAKTIGKYLGPGYEVKASMGHVRDLPKSKLGVDVEHGFELNYQPIKGKEEVI 60
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+K + +E + LA+DPDREGEAI+WH+ EML D RV F+EIT+ +
Sbjct: 61 DELKKSAKKSEKVFLATDPDREGEAISWHLKEMLGIPDD-----KTYRVTFNEITKKVVN 115
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
++ R ID +LV A ARR LD ++G+ ISPLLW+K+ SAGRVQS A L+C+RE
Sbjct: 116 DSIAHPRAIDMDLVNAQQARRVLDRIVGYQISPLLWKKIRRGLSAGRVQSVATRLVCERE 175
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSK---RLNQLSIGSHTEAKDI 588
+I F PQEYW+++A L + +L F++ R ++ + S E +
Sbjct: 176 ADIKAFVPQEYWSLDADLSR----------IAPNLGQFKASFYGREKKVELNSEAEVNAV 225
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+ + +A F V KR ++NP P +ITSTLQQ+A+ KLN + TM +AQ+LYEGV
Sbjct: 226 MEAVKNAPFAVT-GVKRQDKQRNPAPPFITSTLQQEASRKLNMTPRRTMSIAQQLYEGVD 284
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GLITYMRTD L +SDEA + I RYG+ + P G + +K AQ+AH
Sbjct: 285 IEGEGTVGLITYMRTDSLRLSDEATAAAKDFILARYGADYYP--GKARVYKTKSGAQDAH 342
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+++ P + L + KLY LIWSR +ACQM A + +++ +A F
Sbjct: 343 EAIRPSNVNLTPEDIKKSLTAEQYKLYKLIWSRFLACQMASAVYDSVSIEVTSA--GYTF 400
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAF-AILNSLKTGDPLYLGEVELKQ 826
R++ S ++F G+ A Y + K+ EE EAF + L LK G+ L L ++ Q
Sbjct: 401 RATHSALKFSGYTAVY-------VEGKDEEE----EAFQSPLPDLKEGEALKLEALKPDQ 449
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP+RY+E +L+K LEE GIGRPSTYA T+ + DR YV + R L P G +V+
Sbjct: 450 HFTQPPSRYTEATLIKALEEKGIGRPSTYAPTISTILDREYVVKEGRNLRPTPLGEVVTG 509
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ F+++ D +FTA ME LD V G +WK LL D++ F + + E
Sbjct: 510 LMKDKFTDIVDTTFTATMEERLDEVETGKVDWKSLLGDFYGDFEQ--------ELQKAEA 561
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
L+ G+ + D CP CG L++K RFG F+ C P C++
Sbjct: 562 DLD---GERIKVPDEVSDVICPKCGR-NLVYKSGRFGR--FLACPGWPECDH 607
>gi|238019259|ref|ZP_04599685.1| hypothetical protein VEIDISOL_01123 [Veillonella dispar ATCC 17748]
gi|237863958|gb|EEP65248.1| hypothetical protein VEIDISOL_01123 [Veillonella dispar ATCC 17748]
Length = 802
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 275/720 (38%), Positives = 383/720 (53%), Gaps = 70/720 (9%)
Query: 312 KKKSAKA--TKASLQRQTSEEMVIVPRGQNTQNPLYPPSGKSVVVVESVTKAKVIQGYLG 369
K+K AK T + R S VP Q + +Y P GK +V+VES K+K I+ +LG
Sbjct: 37 KRKVAKEALTPMGIVRDKSVLQTSVPPEQR-EPRVYNPDGKVLVIVESPAKSKTIEKFLG 95
Query: 370 DMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAEN---LIL 426
Y V S GH+RDL + + DF+ + S T K I +S A+ ++L
Sbjct: 96 PNYVVKASMGHLRDLPKSQMGIDIEHDFTPRY---SNLVTRKKVIDELVSYADESSAVLL 152
Query: 427 ASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQ 486
A+DPDREGEAI+WH+ +L + + R+ F+EIT+ ++ AL++ R ID N+V
Sbjct: 153 ATDPDREGEAISWHLAYILNV-----DPTSTCRITFNEITKNAVAEALESPRTIDMNMVD 207
Query: 487 AYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVE 546
A ARR LD ++G+ +SPLLW+K+ SAGRVQS A+ LIC+RE EI F PQEYWT+E
Sbjct: 208 AQQARRVLDRIVGYKLSPLLWKKVCKGLSAGRVQSVAVRLICEREREIQAFVPQEYWTIE 267
Query: 547 AVLD--KKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSK 604
+ KKE+ F A LTH + ++++ I + +EA+ + I A+ V K
Sbjct: 268 GNFETPKKEA-------FTAELTHIKGEKID---ITTESEAQAVVDAIGGADAVVTNIEK 317
Query: 605 RSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDG 664
R RK P+ TSTLQQD KLNF A TM +AQ LYEG+++ GLITYMRTD
Sbjct: 318 RKRSRKAAPPFTTSTLQQDGVRKLNFGAKRTMMIAQHLYEGLEIGSYGHVGLITYMRTDS 377
Query: 665 LHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSG 724
IS E + I YG + P + P Y K +AQ+AHEAIRPT + P M+
Sbjct: 378 TRISKEMQVMAKDYIIHNYGEDYYPSK-PNMYGAK-GSAQDAHEAIRPTSLELTPKMVEP 435
Query: 725 LLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYE 784
L D LKLY+LIW+R MA QM P +++ D+ F+++ SRV F GF A YE
Sbjct: 436 FLSRDELKLYTLIWNRFMASQMAPQQNESTTIELTVHDD-YTFKATGSRVIFPGFSAVYE 494
Query: 785 DVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKL 844
D + E L +LK D + EV +QH TQPP RYSE SL+K L
Sbjct: 495 DA--------------KKEDAPQLPALKKNDAAHTVEVLPEQHFTQPPPRYSEASLIKTL 540
Query: 845 EELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADM 904
EELGIGRPSTYA L + RNYV ++ P G +V FL YF ++ + FT D+
Sbjct: 541 EELGIGRPSTYAPILDTIVSRNYVENTNKQFVPTELGFVVVDFLIAYFEKIINTGFTRDL 600
Query: 905 ETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM------------LEKTF 952
E ELD +++G + +L D++ F+ A + ++ M + F
Sbjct: 601 EEELDAIASGKDTYLKVLSDFYEVFAKELEDASDVDRIEIASMESDETCDLCHSPMVYKF 660
Query: 953 GD-------SLFASLPNKDR-------SCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
G S F N +CP C EG ++ + SR G F GCN++P+C++
Sbjct: 661 GRYGKFLACSNFPECKNTKPITVGTGVTCPKCKEGEIVERKSRRGR-LFYGCNRYPQCDF 719
>gi|417924290|ref|ZP_12567736.1| DNA topoisomerase I [Streptococcus mitis SK569]
gi|342836077|gb|EGU70300.1| DNA topoisomerase I [Streptococcus mitis SK569]
Length = 695
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/651 (38%), Positives = 367/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|168216989|ref|ZP_02642614.1| DNA topoisomerase I [Clostridium perfringens NCTC 8239]
gi|182380956|gb|EDT78435.1| DNA topoisomerase I [Clostridium perfringens NCTC 8239]
Length = 700
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 268/688 (38%), Positives = 379/688 (55%), Gaps = 77/688 (11%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KAK I+ YLG Y V S GHVRDL V +++++ +
Sbjct: 2 GQKLVIVESPAKAKTIEKYLGKNYVVEASMGHVRDLPKSQLGVDIENEYNPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L ++ ++ + LA+DPDREGEAI+WH+ +L+ + +EN R+ F+EIT+
Sbjct: 62 ELLSKLRKLAKKSDKIYLATDPDREGEAISWHLANVLKIDE--NEN---CRIEFNEITKD 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K +++ R+I+ NLV A ARR LD L+G+ ISPLLWR + SAGRVQSAAL LIC
Sbjct: 117 AVKNSIKHPRKINCNLVDAQQARRVLDRLVGYEISPLLWRNVKWGLSAGRVQSAALKLIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI +F P+EYWTV+ L K + SFP LT +K ++ I + +A I
Sbjct: 177 DREEEIKKFNPEEYWTVDVKLKKGKK------SFPVKLT---TKNKKKIEIKNKEQADQI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
++ + ++ K+ KNP P+ TSTLQQ+A+ KLNF TM +AQ+LYEGV+
Sbjct: 228 IDELKENEY-IVSKIKKGTKSKNPLAPFTTSTLQQEASKKLNFMTKKTMSVAQQLYEGVE 286
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GLITYMRTD + IS EA ++ + I E YG + PEE PR Y K KN Q+AH
Sbjct: 287 VKKFGTVGLITYMRTDSVRISKEAQEKALNFIDETYGKEYVPEE-PRVY-KGKKNIQDAH 344
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT + P + L D KLY+LIW R +A QM + ++I N D ++
Sbjct: 345 EAIRPTYVEITPEIAKANLSNDQYKLYALIWKRFIASQMATCILNTNSLEIKNGDYTL-- 402
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+S S ++F GF YE + E EE+ +L L+ + L +E KQH
Sbjct: 403 RASGSTIKFDGFMKVYEYISG------EEEES------VLLPELEENEVLKEESIEGKQH 450
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE + VK LEE GIGRPSTY T+ L R YV + +IL P G +V+
Sbjct: 451 FTQPPARYSEAAFVKLLEEKGIGRPSTYVPTISTLISRKYVDREKKILIPTELGFIVNDI 510
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
LS+YF ++ D FTA+ME +LDNV AG W ++ ++++ I + EK
Sbjct: 511 LSNYFKQIVDTDFTAEMEVKLDNVEAGKESWTHIVDEFFTPLKE--------DIEKAEKE 562
Query: 948 LEKT------------------------FGDSL----FASLPNK-------DRSCPVCGE 972
+ K FGD L + N D +CP+CG
Sbjct: 563 ISKVIIEDKVSDVPCDKCGRLMVIKHGRFGDFLACPGYPECQNTKPIVEEVDANCPLCG- 621
Query: 973 GTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
G ++ K S+ G F GC+ +P CN+++
Sbjct: 622 GKILVKRSKKG-NRFYGCSNYPECNFVS 648
>gi|20807896|ref|NP_623067.1| topoisomerase IA [Thermoanaerobacter tengcongensis MB4]
gi|20516462|gb|AAM24671.1| Topoisomerase IA [Thermoanaerobacter tengcongensis MB4]
Length = 694
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 250/649 (38%), Positives = 360/649 (55%), Gaps = 43/649 (6%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
KS+V+VES KAK I +LG ++V S GHVRDL V +++F+ +
Sbjct: 2 AKSLVIVESPAKAKTISKFLGKNFKVAASQGHVRDLPKSQLGVDIENNFAPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
++ +K AE + LA+DPDREGEAI+WHI ++L + R+ FHEIT+
Sbjct: 62 EIIEKLKKEAKDAEKIFLATDPDREGEAISWHIAQLLD-----LDIDKPCRIEFHEITKN 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+++ A++ R+ID NLV A ARR LD L+G+ ISP+LW+K+ SAGRVQS A L+C
Sbjct: 117 AVQAAIKNPRKIDLNLVNAQQARRILDRLVGYKISPILWKKIKRGLSAGRVQSVAARLVC 176
Query: 529 DREMEIDEFKPQEYWTVEAVL-DKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 587
DRE EI+ F P+EYW + AVL D+K S + F + ++ + + E
Sbjct: 177 DREREIEAFVPEEYWNITAVLFDEKTSSKFEA--------KFYGREEEKIELKNREEVDK 228
Query: 588 IEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
I + S + V K + R P P+ITSTLQQ+A+ KL F+A TM +AQ+LYEG++
Sbjct: 229 IINSL-SEEYVVYKVKTGTKKRNPPPPFITSTLQQEASRKLGFTAKKTMLIAQQLYEGIE 287
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ + GL+TY+RTD ++ EA +E I E++G +A + +Y K N Q+AH
Sbjct: 288 IKGEGSVGLVTYIRTDSTRVAKEAKEEAYRYITEKFGKEYANPDA--EYSSKKANVQDAH 345
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT + R P ++ L D KLY LIW R +A QM PA + +DI N +F
Sbjct: 346 EAIRPTSVFREPEIIKDSLTPDQYKLYKLIWDRFIASQMMPAIYDTVAMDIKN--NGYIF 403
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++S S V+FLGF Y V+ + +E E+ L LK G + L E++ QH
Sbjct: 404 KASGSSVKFLGFMTVY--VEGSDFQEEEEEKT--------LPVLKEGTKVRLEELKPTQH 453
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RY+E SL+K+LEE GIGRPSTYA T+ L +R YV ++L P G +V+
Sbjct: 454 FTQPPPRYTEASLIKELEEKGIGRPSTYAPTIATLLERGYVVKDKKVLKPTELGFIVTDA 513
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +FSE+ D FTA+ME +LD + G EW ++ D++ F A+
Sbjct: 514 LKEFFSEIVDVGFTAEMEEQLDKIEEGKVEWYEVVGDFYRDFYKTLKVAE---------- 563
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E+ L + D C VCG ++ K R+G F+ C+ P C
Sbjct: 564 -EQMEKVELEEEVEVTDIKCEVCGRPMVVRK-GRYGK--FLACSGFPEC 608
>gi|422809353|ref|ZP_16857764.1| DNA topoisomerase I [Listeria monocytogenes FSL J1-208]
gi|378752967|gb|EHY63552.1| DNA topoisomerase I [Listeria monocytogenes FSL J1-208]
Length = 692
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/647 (39%), Positives = 361/647 (55%), Gaps = 48/647 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++V S GHVRDL V + D+ + L
Sbjct: 5 LVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTEHDYEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ--QQDALHENITVARVVFHEITEAS 469
K +K A A+ + LA+DPDREGEAIAWH+ L+ Q D L RVVF+EIT+ +
Sbjct: 65 KELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQSDKL-------RVVFNEITKEA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K + + R+ID +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL +I D
Sbjct: 118 VKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIID 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FKP+EYWT++ K + F A+ K+ + + + K++
Sbjct: 178 REKEINNFKPEEYWTIDGNFLKGKK------KFQANFYGVNGKKK---KLSTADDVKEVM 228
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I +F V +K+ +R P+ TS+LQQ+AA KLN+ TM LAQ+LYEG+ L
Sbjct: 229 SAIKGKSFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLG 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E + I E YG + ++ K K AQ+AHEA
Sbjct: 289 KQGTVGLITYMRTDSTRIADSAILEASNYIKETYGPEFS--RNHKRSDKNAKGAQDAHEA 346
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R P + L D L+LY LIW R +A QM PA + ++VD+ N + FR+
Sbjct: 347 IRPTSAMRSPQEVKEYLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDN--NGVNFRA 404
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+++F GF Y + + KEN IL LK GD + +E +QH T
Sbjct: 405 NGSKIKFHGFMKVYVESNDDNTEEKEN----------ILPDLKKGDKVQSESLEQRQHFT 454
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LVK LEE+GIGRPSTY+ TL +Q RNYV++ ++ P G +V+ +
Sbjct: 455 QPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIE 514
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF E+ D FTA+ME+ELD V G EW ++ +++ RF A + + ++E E
Sbjct: 515 EYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKRFEPNVIKADA-EMEKIEIKDE 573
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C +CG +++K+ ++G F+ C++ P C
Sbjct: 574 PAGID------------CDLCG-APMVYKMGKYGK--FLACSRFPDC 605
>gi|332522841|ref|ZP_08399093.1| DNA topoisomerase I [Streptococcus porcinus str. Jelinkova 176]
gi|332314105|gb|EGJ27090.1| DNA topoisomerase I [Streptococcus porcinus str. Jelinkova 176]
Length = 710
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 248/648 (38%), Positives = 365/648 (56%), Gaps = 57/648 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ ++++ + +
Sbjct: 28 LVIVESPAKAKTIEKYLGRNYKVVASVGHIRDLKKSSMSIDFENNYQPEYINIRGKGPLI 87
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
S+K A+ + LASDPDREGEAI+WH+ +L D +N RVVF+EIT+ ++K
Sbjct: 88 NSLKKEAKNAKKVFLASDPDREGEAISWHLSHILGL-DITDKN----RVVFNEITKDAVK 142
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A REID NLV + ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 143 NAFVEPREIDMNLVDSQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIIDRE 202
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI F P+EYWT++ + KK H F A K++ + ++ + + + +
Sbjct: 203 NEIKAFVPEEYWTIDGLF-KKGKHK-----FQASFYGLDDKKM---KLNTNEDVQLVLSR 253
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I S +F V K K+ R P PY TS+LQQDAANK+NF TM +AQ+LYEG+ L
Sbjct: 254 ITSDDFNVSKVEKKERRRNAPLPYTTSSLQQDAANKINFRTRKTMMVAQQLYEGINLGSN 313
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA---QEAHE 708
GLITYMRTD IS A + + I +++GSH++ K+ +VKNA Q+AHE
Sbjct: 314 GTQGLITYMRTDSTRISPVAQNDAATFISQKFGSHYS------KHGNRVKNASSSQDAHE 367
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRP+ + P ++ L++D LKLY+LIW+R +A QM A ++V + +VF
Sbjct: 368 AIRPSSVFHTPESIAKYLNKDQLKLYTLIWNRFVASQMTAAVFDTVKVTL--EQNKVVFT 425
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
S+ S+++F G+ A Y D D + L + G+ + + +QH
Sbjct: 426 SNGSQIKFDGYMAVYNDSDKNKM----------------LPEMSEGEVVKKEKTSPEQHF 469
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPPARYSE +L+K LEE G+GRPSTYA TL+V+Q R YV + ++ P G +V+ +
Sbjct: 470 TQPPARYSEATLIKTLEENGVGRPSTYAPTLEVIQRRYYVKLAAKRFEPTELGEIVNTLI 529
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F ++ D +FTADME++LD V G +W+ ++ ++ F + + E +
Sbjct: 530 VEFFPDIVDVTFTADMESKLDQVETGERQWQTVIDSFYQPFVK--------DLEKAEDEI 581
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
EK A C +CG ++ K+ RFG F C+ P C
Sbjct: 582 EKIQIKDEPAGF-----DCDICGH-PMVIKLGRFGK--FYACSNFPEC 621
>gi|422418872|ref|ZP_16495827.1| DNA topoisomerase I [Listeria seeligeri FSL N1-067]
gi|313633476|gb|EFS00300.1| DNA topoisomerase I [Listeria seeligeri FSL N1-067]
Length = 692
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/647 (39%), Positives = 360/647 (55%), Gaps = 48/647 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++V S GHVRDL V ++D+ + L
Sbjct: 5 LVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTENDYEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ--QQDALHENITVARVVFHEITEAS 469
K +K A A+ + LA+DPDREGEAIAWH+ L Q D L RVVF+EIT+ +
Sbjct: 65 KELKQAAKKAKKVYLAADPDREGEAIAWHLANSLDLDQSDKL-------RVVFNEITKEA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K + + R+ID +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL +I D
Sbjct: 118 VKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIID 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FKP+EYWT++ K + F A+ K+ + + + K++
Sbjct: 178 REKEINNFKPEEYWTIDGNFLKGKK------KFQANFYGVNGKKK---KLSTADDVKEVM 228
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I F V +K+ +R P+ TS+LQQ+AA KLN+ TM LAQ+LYEG+ L
Sbjct: 229 SAIKGKTFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLG 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E + I E YG + ++ K K AQ+AHEA
Sbjct: 289 KQGTVGLITYMRTDSTRIADSAILEAGNYIKETYGPEFS--RNHKRSDKNAKGAQDAHEA 346
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R P + L D L+LY LIW R +A QM PA + ++VD+ N + FR+
Sbjct: 347 IRPTSAMRSPQAVKEYLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDN--NGVNFRA 404
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+++F GF Y + + KEN IL LK GD + +E +QH T
Sbjct: 405 NGSKIKFHGFMKVYVESNDDNTEEKEN----------ILPDLKKGDKVQSESLEQRQHFT 454
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LVK LEE+GIGRPSTY+ TL +Q RNYV++ ++ P G +V+ +
Sbjct: 455 QPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIE 514
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF E+ D FTA+ME+ELD V G EW ++ +++ +F A + + ++E E
Sbjct: 515 EYFPEILDVKFTANMESELDEVEHGQVEWVKVIDEFYKQFEPNVIKADA-EMEKIEIKDE 573
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C +CG ++FK+ ++G F+ C++ P C
Sbjct: 574 PAGID------------CDLCG-APMVFKMGKYGK--FLACSRFPDC 605
>gi|148985161|ref|ZP_01818400.1| DNA topoisomerase I [Streptococcus pneumoniae SP3-BS71]
gi|387757588|ref|YP_006064567.1| DNA topoisomerase I [Streptococcus pneumoniae OXC141]
gi|418232298|ref|ZP_12858885.1| DNA topoisomerase I [Streptococcus pneumoniae GA07228]
gi|418236759|ref|ZP_12863327.1| DNA topoisomerase I [Streptococcus pneumoniae GA19690]
gi|147922606|gb|EDK73724.1| DNA topoisomerase I [Streptococcus pneumoniae SP3-BS71]
gi|301800177|emb|CBW32785.1| DNA topoisomerase I [Streptococcus pneumoniae OXC141]
gi|353887025|gb|EHE66805.1| DNA topoisomerase I [Streptococcus pneumoniae GA07228]
gi|353892991|gb|EHE72739.1| DNA topoisomerase I [Streptococcus pneumoniae GA19690]
gi|429319556|emb|CCP32839.1| DNA topoisomerase I [Streptococcus pneumoniae SPN034183]
gi|429321373|emb|CCP34813.1| DNA topoisomerase I [Streptococcus pneumoniae SPN994039]
gi|429323193|emb|CCP30854.1| DNA topoisomerase I [Streptococcus pneumoniae SPN994038]
Length = 695
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISSVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLTIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|227486584|ref|ZP_03916900.1| DNA topoisomerase [Anaerococcus lactolyticus ATCC 51172]
gi|227235402|gb|EEI85417.1| DNA topoisomerase [Anaerococcus lactolyticus ATCC 51172]
Length = 685
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/680 (38%), Positives = 366/680 (53%), Gaps = 68/680 (10%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES TKA+ I LG Y+V + GH+RDL V +++F +
Sbjct: 2 AKNLVIVESPTKARSISKMLGRNYKVKATVGHLRDLPKSKFGVDIENNFEPEYIKVRGRA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+ +K A+ + LA+DPDREGEAI+WH+ E L D N RV FHEIT+
Sbjct: 62 KTINELKKEAKTADKVYLATDPDREGEAISWHL-EYLLDLDPNENN----RVEFHEITKN 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ A++ R+ID NLV A ARR +D ++G+ ISP+LW+++ SAGRVQS AL LI
Sbjct: 117 NVLAAMKKPRKIDKNLVDAQQARRVMDRIVGYEISPILWKRVKSGLSAGRVQSVALKLIV 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DR+ EIDEF P+EYWT+ A H SF + F + ++ + + AK +
Sbjct: 177 DRQKEIDEFIPEEYWTITA------KHKYGDISFESE---FYGTKTKKMKVANEAGAKKV 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+KI+ NF+V SK R+ PY TSTLQQDA+N+L FS +TM+LAQ+LYEG+ +
Sbjct: 228 LEKIDKDNFKVESISKTKRKRRPYAPYTTSTLQQDASNRLGFSTKFTMQLAQQLYEGIDI 287
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
GLI+YMRTD IS E E I E+YG+ +A + Y K K +Q+AHE
Sbjct: 288 GKDGTVGLISYMRTDATRISKEIVGESLKYIKEKYGAEYAGKGNT--YSGKKKGSQDAHE 345
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT I R P + L + KLY LIWSR +A QM Q++ N I+FR
Sbjct: 346 AIRPTSIFRDPISIKTYLTDQQYKLYKLIWSRVVASQMADYEYLSTQINYDN--NGIIFR 403
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
S+ F GF +G++ +NE IL LK G+ + ++E QH
Sbjct: 404 SNGKITIFDGFNKL-----SGSL---DNEN--------ILPDLKEGEVISAEKIEKDQHF 447
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PPARY+E SLVK LEE GIGRPSTY++T+ + RNYV + R +YP G+ V+ FL
Sbjct: 448 TNPPARYTEASLVKTLEEFGIGRPSTYSATINQIISRNYVELDGRSIYPTKLGKTVNEFL 507
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF-----------SSY----- 932
F +V + FTADME +LD ++ WK +L ++ F + Y
Sbjct: 508 QENFDDVINVEFTADMENQLDKIAEDGVNWKDVLNAFYKDFRKDMDAVKKDTTDYKVKDK 567
Query: 933 -----C-TCAQSLHIHQ--------VEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFK 978
C C ++L + E F S+ + K CP C +G +I K
Sbjct: 568 VLDEKCPKCGKALAVKHGRNGKFIGCTGFPECDFTKSIIKTTGVK---CPKCKDGEIIEK 624
Query: 979 VSRFGAGYFIGCNQHPRCNY 998
VS+ G ++ GC+ +P+C+Y
Sbjct: 625 VSKRGKRFY-GCDNYPKCDY 643
>gi|419499842|ref|ZP_14039536.1| DNA topoisomerase I [Streptococcus pneumoniae GA47597]
gi|379599150|gb|EHZ63933.1| DNA topoisomerase I [Streptococcus pneumoniae GA47597]
gi|429316214|emb|CCP35886.1| DNA topoisomerase I [Streptococcus pneumoniae SPN034156]
Length = 695
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLTIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|418146467|ref|ZP_12783247.1| DNA topoisomerase I [Streptococcus pneumoniae GA13637]
gi|421213317|ref|ZP_15670274.1| DNA topoisomerase I [Streptococcus pneumoniae 2070108]
gi|421215562|ref|ZP_15672483.1| DNA topoisomerase I [Streptococcus pneumoniae 2070109]
gi|353813675|gb|EHD93903.1| DNA topoisomerase I [Streptococcus pneumoniae GA13637]
gi|395579549|gb|EJG40047.1| DNA topoisomerase I [Streptococcus pneumoniae 2070108]
gi|395579769|gb|EJG40264.1| DNA topoisomerase I [Streptococcus pneumoniae 2070109]
Length = 695
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLTIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|417914912|ref|ZP_12558543.1| DNA topoisomerase I [Streptococcus mitis bv. 2 str. SK95]
gi|342835663|gb|EGU69897.1| DNA topoisomerase I [Streptococcus mitis bv. 2 str. SK95]
Length = 695
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/651 (38%), Positives = 367/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILD----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ + + ++ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGMNGKK---MKLTTNEEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F V + K+ R P PY TST+Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 HLTSKDFTVDQVDKKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASYINDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTGAIFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMSVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ +++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDEFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|297570258|ref|YP_003691602.1| DNA topoisomerase I [Desulfurivibrio alkaliphilus AHT2]
gi|296926173|gb|ADH86983.1| DNA topoisomerase I [Desulfurivibrio alkaliphilus AHT2]
Length = 768
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 251/653 (38%), Positives = 364/653 (55%), Gaps = 33/653 (5%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
GKS+++VES KA+ +Q +LG Y V S GH+RDL S V D DF+ +
Sbjct: 2 GKSLIIVESPAKARTLQKHLGKDYLVKASVGHIRDLPVSSLGVDIDHDFAPQYVTIKGKA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+ +K A A+ + LA DPDREGEAIA+HI E L+ + RV+FHE+T
Sbjct: 62 KVISDLKKAAKEADQVYLAPDPDREGEAIAYHIAEALKTT-----RKPIRRVLFHELTHK 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++ AL+ + E+D +L +A ARR LD L+G+ ISPLLW K+ SAGRVQS A+ ++C
Sbjct: 117 AVLAALEKSGEVDHHLFEAQQARRVLDRLVGYQISPLLWDKVRRGLSAGRVQSVAVRMVC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLN--QLSIGSHTEAK 586
+RE EI++F +EYW++ L + F A L ++L+ + I +A+
Sbjct: 177 EREEEIEKFVSEEYWSITTTLAGPQPPP-----FQALLEKVDGRKLDNRKRKIADEAQAR 231
Query: 587 DIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
++ ++ +A +V K+ R+ P+ITST+Q DA KL FSA TM AQ+LYEG+
Sbjct: 232 ELVLQLMAAELKVAGVDKKQQRRRPSPPFITSTMQMDANRKLRFSAKKTMAQAQRLYEGI 291
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L GLITYMRTD ++DEA R I YG+ + P + P +Y K K AQ+A
Sbjct: 292 DLGKEGPVGLITYMRTDSTRVNDEALGMARDYIGSTYGADYLPAK-PVQY-KTGKGAQDA 349
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI- 765
HEAIRPTD+ R P L+G LD+D L LY+LIW R +A QM PA Q + I E
Sbjct: 350 HEAIRPTDVSRTPESLAGKLDKDMLALYTLIWKRFVASQMAPAIYDQTSIRIAGGPEGRH 409
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
+++ S + F GF Y V+A +E +++ + A+L L+ G L L E+ K
Sbjct: 410 ELKATGSIMRFPGFMTLY--VEAVDETPEEGKQSGKGGKDALLPDLQEGQLLKLNEITPK 467
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH TQPP RY+E +LVK LEE G+GRPSTYA+ L + D+ YV + R YP GRMV+
Sbjct: 468 QHFTQPPPRYTEATLVKALEENGVGRPSTYAAILSTIVDKEYVRLTQRKFYPTDLGRMVN 527
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
L +F +V D FTA +E ELD + G +W ++ +++ F ++ Q
Sbjct: 528 KLLVAHFPKVIDTDFTAKLEQELDEIETGKVDWVQVMREFYGPFQQ--------NLEQAR 579
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+ ++ ++ L +CP C E L+ K R G F+ C+ +P C +
Sbjct: 580 EEMKAVKHSAIPTGL-----NCPQC-ESELVIKWGR--KGEFLACSNYPECKH 624
>gi|320161001|ref|YP_004174225.1| DNA topoisomerase I [Anaerolinea thermophila UNI-1]
gi|319994854|dbj|BAJ63625.1| DNA topoisomerase I [Anaerolinea thermophila UNI-1]
Length = 776
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 267/657 (40%), Positives = 364/657 (55%), Gaps = 45/657 (6%)
Query: 348 SGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAA 407
SGK +V+VES KAK + +LG + V S GHVRDL SV + DF + VP+
Sbjct: 69 SGK-LVIVESPAKAKTVGRFLGKGFTVKASVGHVRDLLRSELSVDIEHDFQPKYRVPNEK 127
Query: 408 WTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITE 467
+K +K AE + LA+DPDREGEAIAWH+++ + L + RVVFHEIT+
Sbjct: 128 RAVVKELKALAQEAEEIYLATDPDREGEAIAWHLMQAAEIDPRLSK-----RVVFHEITK 182
Query: 468 ASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLI 527
+I A REI+ LV A ARR LD L+G+N+SPLLW K+ SAGRVQS AL LI
Sbjct: 183 PAIDEAFSHPREINMALVDAQQARRVLDRLVGYNLSPLLWEKVRSRLSAGRVQSVALRLI 242
Query: 528 CDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHF--QSKRLNQLSIGSHTEA 585
+RE EI F P EYW++EA L + S +F A L+ Q L + S A
Sbjct: 243 VEREREIQAFIPVEYWSIEAELQPEGVSS----TFIAKLSKIDEQDPELPNQEVVSRYLA 298
Query: 586 KDIEQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYE 644
D+EQ + +I +RS R+ P P+ITSTLQQ+A+ +L F+A TM +AQ+LYE
Sbjct: 299 -DLEQALF-----IISKIRRSERRRKPAAPFITSTLQQEASRRLGFTARRTMAIAQQLYE 352
Query: 645 GVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQ 704
G+ + +G GLITYMRTD +IS+ A +E+R I E YG + P E P +Y + +AQ
Sbjct: 353 GLDVGEGGTTGLITYMRTDSTNISEVALREVREFIKETYGGSYLP-ESPLQYKTRAVSAQ 411
Query: 705 EAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVG--QIQVDIGNAD 762
EAHEAIRPT + R P + L + KLY L+W R +ACQM+ A ++VD +
Sbjct: 412 EAHEAIRPTSVARTPEKVKPYLSPEQYKLYQLVWQRFVACQMESAVYDTLSVEVDAKGEE 471
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
+FR+S S ++F GF YE+ R ++ D I ++ G L +
Sbjct: 472 HQYLFRASGSTLKFPGFLVVYEES-----RDEDQVSEDEGTETRIPAHIQEGQKQELVRL 526
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
+QH TQPP RY+E +LV+ LEE GIGRPSTYA L +Q+R YV + L P G
Sbjct: 527 IPEQHFTQPPPRYTEATLVQVLEENGIGRPSTYAPILSTIQERGYVVRDGKRLVPTETGI 586
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ + +F ++ D FTA ME +LD ++AG +W ++ ++ FS A+ L
Sbjct: 587 LVNDLIVAHFPDIVDTGFTAKMEEDLDRIAAGNEKWVNVIRQFYQSFSPQVERARML--- 643
Query: 943 QVEKMLEKTFGDSLFASLPNK-DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
M E S P K R CP CG LI + RFG FI C+ P C Y
Sbjct: 644 ----MPES-------KSEPEKVGRQCPQCGHD-LIVRWGRFGK--FISCSNFPNCRY 686
>gi|217964582|ref|YP_002350260.1| DNA topoisomerase I [Listeria monocytogenes HCC23]
gi|386008044|ref|YP_005926322.1| DNA topoisomerase I [Listeria monocytogenes L99]
gi|386026643|ref|YP_005947419.1| DNA topoisomerase I [Listeria monocytogenes M7]
gi|404407709|ref|YP_006690424.1| DNA topoisomerase I [Listeria monocytogenes SLCC2376]
gi|217333852|gb|ACK39646.1| DNA topoisomerase I [Listeria monocytogenes HCC23]
gi|307570854|emb|CAR84033.1| DNA topoisomerase I [Listeria monocytogenes L99]
gi|336023224|gb|AEH92361.1| DNA topoisomerase I [Listeria monocytogenes M7]
gi|404241858|emb|CBY63258.1| DNA topoisomerase I [Listeria monocytogenes SLCC2376]
Length = 692
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/647 (39%), Positives = 361/647 (55%), Gaps = 48/647 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++V S GHVRDL V + D+ + L
Sbjct: 5 LVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTEHDYEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ--QQDALHENITVARVVFHEITEAS 469
K +K A A+ + LA+DPDREGEAIAWH+ L+ Q D L RVVF+EIT+ +
Sbjct: 65 KELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQSDKL-------RVVFNEITKEA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K + + R+ID +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL +I D
Sbjct: 118 VKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIID 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FKP+EYWT++ K + F A+ K+ + + + K++
Sbjct: 178 REKEINNFKPEEYWTIDGNFLKGKK------KFQANFYGVNGKKK---KLSTADDVKEVM 228
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I +F V +K+ +R P+ TS+LQQ+AA KLN+ TM LAQ+LYEG+ L
Sbjct: 229 SAIKGKSFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLG 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E + I E YG + ++ K K AQ+AHEA
Sbjct: 289 KQGTVGLITYMRTDSTRIADSAILEASNYIKETYGPEFS--RNHKRSDKNAKGAQDAHEA 346
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R P + L D L+LY LIW R +A QM PA + ++VD+ N + FR+
Sbjct: 347 IRPTSAMRSPQEVKEYLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDN--NGVNFRA 404
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+++F GF Y + + KEN IL LK GD + +E +QH T
Sbjct: 405 NGSKIKFHGFMKVYVESNDDNTEEKEN----------ILPDLKKGDKVQSESLEQRQHFT 454
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LVK LEE+GIGRPSTY+ TL +Q RNYV++ ++ P G +V+ +
Sbjct: 455 QPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIE 514
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF E+ D FTA+ME+ELD V G EW ++ +++ RF A + + ++E E
Sbjct: 515 DYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKRFEPNVIKADA-EMEKIEIKDE 573
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C +CG +++K+ ++G F+ C++ P C
Sbjct: 574 PAGID------------CDLCG-APMVYKMGKYGK--FLACSRFPDC 605
>gi|110800343|ref|YP_696389.1| DNA topoisomerase I [Clostridium perfringens ATCC 13124]
gi|168210691|ref|ZP_02636316.1| DNA topoisomerase I [Clostridium perfringens B str. ATCC 3626]
gi|422346372|ref|ZP_16427286.1| DNA topoisomerase I [Clostridium perfringens WAL-14572]
gi|110674990|gb|ABG83977.1| DNA topoisomerase I [Clostridium perfringens ATCC 13124]
gi|170711275|gb|EDT23457.1| DNA topoisomerase I [Clostridium perfringens B str. ATCC 3626]
gi|373225917|gb|EHP48244.1| DNA topoisomerase I [Clostridium perfringens WAL-14572]
Length = 700
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 269/688 (39%), Positives = 378/688 (54%), Gaps = 77/688 (11%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KAK I+ YLG Y V S GHVRDL V +++++ +
Sbjct: 2 GQKLVIVESPAKAKTIEKYLGKNYVVEASMGHVRDLPKSQLGVDIENEYNPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L ++ ++ + LA+DPDREGEAI+WH+ +L+ + +EN R+ F+EIT+
Sbjct: 62 ELLSKLRKLAKKSDKIYLATDPDREGEAISWHLANVLKIDE--NEN---CRIEFNEITKD 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K +++ R+I+ NLV A ARR LD L+G+ ISPLLWR + SAGRVQSAAL LIC
Sbjct: 117 AVKNSIKHPRKINCNLVDAQQARRVLDRLVGYEISPLLWRNVKWGLSAGRVQSAALKLIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI +F P+EYWTV+ L K + SFP LT +K ++ I + +A I
Sbjct: 177 DREEEIKKFNPEEYWTVDVKLKKGKK------SFPVKLT---TKNKKKIEIKNKEQADQI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
++ + ++ K+ KNP P+ TSTLQQ+A+ KLNF TM +AQ+LYEGV+
Sbjct: 228 IDELKENEY-IVSKIKKGTKNKNPLAPFTTSTLQQEASKKLNFMTKKTMSVAQQLYEGVE 286
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GLITYMRTD + IS EA ++ + I E YG + PEE PR Y K KN Q+AH
Sbjct: 287 VKKFGTVGLITYMRTDSVRISKEAQEKALNFIDETYGKEYVPEE-PRVY-KGKKNIQDAH 344
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT + P + L D KLY+LIW R +A QM + ++I N D ++
Sbjct: 345 EAIRPTYVEITPEIAKANLSNDQYKLYALIWKRFIASQMATCILNTNSLEIKNGDYTL-- 402
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+S S ++F GF YE Y EE E +L L+ + L +E KQH
Sbjct: 403 RASGSTIKFDGFMKVYE--------YILGEE----EESVLLPELEENEVLKEESIEGKQH 450
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE + VK LEE GIGRPSTY T+ L R YV + +IL P G +V+
Sbjct: 451 FTQPPARYSEAAFVKLLEEKGIGRPSTYVPTISTLISRKYVDREKKILIPTELGFIVNDI 510
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
LS+YF ++ D FTA+ME +LDNV AG W ++ ++++ I + EK
Sbjct: 511 LSNYFKQIVDTDFTAEMEVKLDNVEAGKESWTHIVDEFFTPLKE--------DIEKAEKE 562
Query: 948 LEKT------------------------FGDSL----FASLPNK-------DRSCPVCGE 972
+ K FGD L + N D +CP+CG
Sbjct: 563 ISKVIIEDKVSDVPCDKCGRLMVIKHGRFGDFLACPGYPECQNTKPIVEEVDANCPLCG- 621
Query: 973 GTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
G ++ K S+ G F GC+ +P CN+++
Sbjct: 622 GKILVKRSKKG-NRFYGCSNYPECNFVS 648
>gi|387879571|ref|YP_006309874.1| DNA topoisomerase I [Streptococcus parasanguinis FW213]
gi|386793024|gb|AFJ26059.1| DNA topoisomerase I [Streptococcus parasanguinis FW213]
Length = 695
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 247/652 (37%), Positives = 370/652 (56%), Gaps = 58/652 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I+ YLG Y+V+ S GH+RDL + S+ D+++ +
Sbjct: 14 KNLVIVESPAKAKTIEKYLGRNYKVMASVGHIRDLKKSTMSIDFDNNYEPEYINIRGKGP 73
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ +K A+ + LASDPDREGEAI+WH+ +L DA +N RVVF+EIT+ +
Sbjct: 74 LINDLKKEAKKAKQVFLASDPDREGEAISWHLAHILNL-DAKEKN----RVVFNEITKDA 128
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A + R+ID +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI D
Sbjct: 129 VKNAFKEPRQIDMDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIID 188
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI++FKP+EYWT++ V K T F A K+ + + ++ E K +
Sbjct: 189 RENEINDFKPEEYWTIDGVFKK------GTKQFQASFYGIDGKK---MKLNTNEEVKAVL 239
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++++ +F V K K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 240 ERLDGKDFTVEKVEKKERRRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIG 299
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEA 706
G GLITYMRTD IS A E + I +R+G ++ K+ +VKN AQ+A
Sbjct: 300 SGV-QGLITYMRTDSTRISPVAQNEAANFIVDRFGEKYS------KHGSRVKNASGAQDA 352
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V +G +
Sbjct: 353 HEAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMNVRLGQ--NGVQ 410
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
+ ++ S+V+F G+ A Y D D +L + GD + + +Q
Sbjct: 411 YTANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVEGDIVKQVNSKPEQ 454
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 455 HFTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVKLVAKRFEPTELGEIVNK 514
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ +F ++ + +FTA+ME +LD+V G EW+ ++ ++ FS + + E+
Sbjct: 515 LIVEFFPDIVNVTFTAEMEGKLDDVELGKEEWQKVIDAFYKPFSK--------EVAKAEE 566
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 567 EMEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|255994122|ref|ZP_05427257.1| DNA topoisomerase [Eubacterium saphenum ATCC 49989]
gi|255993790|gb|EEU03879.1| DNA topoisomerase [Eubacterium saphenum ATCC 49989]
Length = 685
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/646 (39%), Positives = 361/646 (55%), Gaps = 52/646 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+VVVES +KAK I +LG Y+V+ + GH+RDL V+ ++DF + + +
Sbjct: 13 LVVVESPSKAKTISKFLGSGYKVVATVGHIRDLPKSRMGVKIEEDFEPEYINVRGKASVI 72
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K IK A ++ LA DPDREGEAIAWH+ +L + EN + RV F+EIT+ ++K
Sbjct: 73 KDIKKQAENASDVYLAPDPDREGEAIAWHLAYLL----GISENDS-CRVTFNEITKDTVK 127
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ REI+ +LV A RR LD L+G+ ISPLLWRK+ SAGRVQSAAL +ICDRE
Sbjct: 128 KAIKEPREINESLVDAQQGRRVLDRLVGYQISPLLWRKVRRGLSAGRVQSAALKIICDRE 187
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
I F P+EYW + A ++ + F A L F++K++ I + EA++ E+
Sbjct: 188 EAIKNFVPEEYWKIFAEFNEHDG-------FDAELVKFKNKKI---EIHNVNEAENHEKA 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
I +F + K+ R+ P+ TS+LQQDAANKLNFS TM +AQKLYEGV +P
Sbjct: 238 ICDGSFSISSVIKKEKKRRPYAPFTTSSLQQDAANKLNFSTKKTMSVAQKLYEGVDIPGK 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLI+Y+RTD + ISD+A + + I RY + Y K K+ Q+AHEAIR
Sbjct: 298 GTTGLISYIRTDSVRISDDAKAKAKEFIIGRYSEKYYSNNF---YSNKKKDIQDAHEAIR 354
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
P+D P + L + KLY LIW+R +A QM V+I N D +FR +
Sbjct: 355 PSDPFLTPESIQNSLTAEQYKLYRLIWTRFIASQMSSCVFDSTVVEIKNGD--YIFRKTG 412
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGE-VELKQHHTQ 830
S F G+ Y+ D + +++ +K GD L L + + L+QH T+
Sbjct: 413 SIKTFDGYTKVYDFAD---------------DKDSLIPDVKEGDVLTLKDKLSLEQHFTK 457
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PPAR++E SLVK LEE IGRPSTYA T+ L RNY+ + ++L E G +V+ +S
Sbjct: 458 PPARFTEASLVKFLEENNIGRPSTYAPTITTLITRNYIKREKKVLIAEELGILVNELISK 517
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF ++ D FTA ME LD+V G +WK ++ D++ F A+S +EK
Sbjct: 518 YFKDIVDIEFTARMEDRLDSVEMGTLQWKDVIRDFYGGFVKELKVAES--------NIEK 569
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ + A +CP CG+ +I K RFG FI C+ +P C
Sbjct: 570 VKFEEVLAG-----ENCPKCGKPMMI-KQGRFGK--FIACSGYPTC 607
>gi|403069198|ref|ZP_10910530.1| DNA topoisomerase I [Oceanobacillus sp. Ndiop]
Length = 692
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/681 (38%), Positives = 364/681 (53%), Gaps = 65/681 (9%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y V S GH+RDL V DD++ + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYTVKASMGHIRDLPKSQMGVDVDDNYKPKYITIRGKGDVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K ++ + A+ + LA+DPDREGEAIAWH+ +L + EN + RVVF+EIT+ +IK
Sbjct: 65 KELRKSAKKAKKIYLAADPDREGEAIAWHLAHILN----VDEN-SPCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R ID +LV A ARR LD L+G+NISPLLW+K+ SAGRVQS AL +I DRE
Sbjct: 120 ESFKHPRSIDLDLVDAQQARRILDRLVGYNISPLLWKKVKKGLSAGRVQSVALKMILDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++F+P+EYW+++A K D F K+ + + ++ DI+ K
Sbjct: 180 KEIEKFEPEEYWSIDAQFQK------DKEIFEGSFFGINGKK---TELKTESDVNDIKAK 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL--P 649
++ F V K +KR R P+ITS+LQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 MDGNKFTVDKVNKRERKRNPAQPFITSSLQQEAARKLNFRAKKTMMIAQQLYEGIDLGRK 290
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTD IS+ A +E + I E YG + G K K + AQ+AHEA
Sbjct: 291 AGGITGLITYMRTDSTRISETAKQEAKGYIEENYGKEYL---GTSKPVKNKEGAQDAHEA 347
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R P + LL D L+LY LIW R +A QM PA + + V + N D + FR+
Sbjct: 348 IRPTSTLRDPKTIKDLLSRDQLRLYKLIWERFVASQMSPAVMDTMTVHLLNND--VEFRA 405
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+++F GF Y E ++++ +L L G + E+ QH T
Sbjct: 406 TGSKIKFKGFMRV----------YVEGTDDNKKVEDKLLPDLSEGMTVDSKEIIPNQHFT 455
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY++ LV+ +EELGIGRPSTYA TL +Q R YVT+ ++ P G +V +
Sbjct: 456 QPPPRYTDARLVRTMEELGIGRPSTYAPTLDTIQRRGYVTMDNKRFIPTELGTIVCEMVE 515
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCT--------------- 934
+F E+ D FT ME +LD+V G EW ++ +++ FS
Sbjct: 516 EFFPEIIDADFTVKMENDLDSVEEGKIEWMKIIDEFYGGFSKRLEKAEKEIEKIEIKDEP 575
Query: 935 ----CAQSLHIHQVEKMLEKTFGDSLFAS-----------LPNKDRSCPVCGEGTLIFKV 979
C H V KM +G L S L CP C EG ++ +
Sbjct: 576 AGIDCENCGH-EMVYKM--GRYGKFLACSNFPECRNTKPILKEIGVKCPKCKEGNVVERK 632
Query: 980 SRFGAGYFIGCNQHPRCNYIA 1000
S+ F GC++ P C++++
Sbjct: 633 SK-KRRTFYGCDRFPECDFVS 652
>gi|293365576|ref|ZP_06612285.1| DNA topoisomerase TopA [Streptococcus oralis ATCC 35037]
gi|307703530|ref|ZP_07640472.1| DNA topoisomerase I [Streptococcus oralis ATCC 35037]
gi|291315944|gb|EFE56388.1| DNA topoisomerase TopA [Streptococcus oralis ATCC 35037]
gi|307622937|gb|EFO01932.1| DNA topoisomerase I [Streptococcus oralis ATCC 35037]
Length = 695
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 367/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ + + ++ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGMNGKK---MKLTTNEEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F V + K+ R P PY TST+Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 HLTSKDFTVDQVDKKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASYINNRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTGAIFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ +++ FS A+S ++EK+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDEFYKPFSKEVAKAES----EMEKI 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
K C VCG ++ K+ RFG F C+ P C +
Sbjct: 572 QIKDEPAGF---------DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|422421932|ref|ZP_16498885.1| DNA topoisomerase I [Listeria seeligeri FSL S4-171]
gi|313638166|gb|EFS03422.1| DNA topoisomerase I [Listeria seeligeri FSL S4-171]
Length = 692
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/647 (39%), Positives = 360/647 (55%), Gaps = 48/647 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++V S GHVRDL V ++D+ + L
Sbjct: 5 LVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTENDYEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ--QQDALHENITVARVVFHEITEAS 469
K +K A A+ + LA+DPDREGEAIAWH+ L Q D L RVVF+EIT+ +
Sbjct: 65 KELKQAAKKAKKVYLAADPDREGEAIAWHLANSLDLDQSDKL-------RVVFNEITKEA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K + + R+ID +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL +I D
Sbjct: 118 VKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIID 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FKP+EYWT++ K + F A+ K+ + + + K++
Sbjct: 178 REKEINNFKPEEYWTIDGNFLKGKK------KFQANFYGVNGKKK---KLSTADDVKEVM 228
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I F V +K+ +R P+ TS+LQQ+AA KLN+ TM LAQ+LYEG+ L
Sbjct: 229 SAIKGKTFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLG 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E + I E YG + ++ K K AQ+AHEA
Sbjct: 289 KQGTVGLITYMRTDSTRIADSAILEAGNYIKETYGPEFS--RNHKRSDKNAKGAQDAHEA 346
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R P + L D L+LY LIW R +A QM PA + ++VD+ N + FR+
Sbjct: 347 IRPTSAMRSPQAVKEYLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDN--NGVNFRA 404
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+++F GF Y + + KEN IL LK GD + +E +QH T
Sbjct: 405 NGSKIKFHGFMKVYVESNDDNTEEKEN----------ILPDLKKGDKVQSESLEQRQHFT 454
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LVK LEE+GIGRPSTY+ TL +Q RNYV++ ++ P G +V+ +
Sbjct: 455 QPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIE 514
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF E+ D FTA+ME+ELD V G EW ++ +++ +F A + + ++E E
Sbjct: 515 EYFPEILDVKFTANMESELDEVEHGQVEWVKVIDEFYKQFEPNVIKADA-EMEKIEIKDE 573
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C +CG ++FK+ ++G F+ C++ P C
Sbjct: 574 PAGID------------CDLCG-APMVFKMGKYGK--FLACSRFPDC 605
>gi|359411419|ref|ZP_09203884.1| DNA topoisomerase I [Clostridium sp. DL-VIII]
gi|357170303|gb|EHI98477.1| DNA topoisomerase I [Clostridium sp. DL-VIII]
Length = 699
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 251/649 (38%), Positives = 362/649 (55%), Gaps = 48/649 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KAK I YLG Y V S GHVRDL + V +++++ +
Sbjct: 2 GQKLVIVESPAKAKTIGKYLGKNYIVEASMGHVRDLPKSTLGVDIENNYTPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+ ++ A A+ + LA+DPDREGEAI+WH+ +L+ + E+ T R+VF+E+T+
Sbjct: 62 ELIDKLRKAAKKADKVYLATDPDREGEAISWHLANILK----ISEDET-CRIVFNEVTKN 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K +++ AR+ID +LV A ARR LD L+G+ ISP+LWR + SAGRVQSAAL LIC
Sbjct: 117 AVKASIKQARKIDLDLVDAQQARRILDRLVGYEISPILWRNVKWGLSAGRVQSAALKLIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI+EF P+EYW+++ L K++ FP L+ ++ K+ + I + + I
Sbjct: 177 DREKEINEFIPKEYWSIDCTLKKEKKK------FPVRLSTYKGKK---IEIENEETSNTI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+++ F ++K K+ +NP P+ TSTLQQDA KLNF TM +AQ LYEGV+
Sbjct: 228 VEELKRGKF-IVKAIKKGKKSRNPLPPFTTSTLQQDANRKLNFMTKRTMSIAQGLYEGVE 286
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GLITYMRTD + IS+EA + + I + YG + P G + +K KN Q+AH
Sbjct: 287 IKGYGTVGLITYMRTDSVRISEEAQEGAKKFIGDTYGKEYLP--GSARIYKGKKNIQDAH 344
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT + P M L + KLYSLIW+R +A QM + +DI N D F
Sbjct: 345 EAIRPTYVEITPQMAKENLTAEQYKLYSLIWNRFVASQMASCELNTNSIDIENGDYK--F 402
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++S S + F GF YE N+ E IL LK + L L ++ QH
Sbjct: 403 KASGSVIAFDGFMKIYE------------YSNEDDENSVILPELKEDEELKLDSLQGTQH 450
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQP RY+E S VK LEE GIGRPSTY T+ L RNYV + + L P G +V+
Sbjct: 451 FTQPAPRYTEASFVKLLEEKGIGRPSTYVPTISTLLGRNYVVREKKNLIPTELGEIVNNI 510
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+S YF ++ D FTADME +LD+V G W ++ ++++ + I + EK
Sbjct: 511 VSEYFKQIVDVDFTADMEKKLDDVEEGNENWTRIVEEFFNPL--------KIAIEKAEKE 562
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ K + + D C CG ++ K R+G F+ C +P C
Sbjct: 563 ISKVVIEDKVS-----DVKCEKCGR-MMVIKRGRYGE--FLACPGYPEC 603
>gi|417002729|ref|ZP_11942033.1| DNA topoisomerase I [Anaerococcus prevotii ACS-065-V-Col13]
gi|325479017|gb|EGC82118.1| DNA topoisomerase I [Anaerococcus prevotii ACS-065-V-Col13]
Length = 684
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 262/677 (38%), Positives = 373/677 (55%), Gaps = 63/677 (9%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES TKAK I LG Y+V+ + GH+RDL V ++DF +
Sbjct: 2 AKNLVIVESPTKAKSISKMLGRNYKVMATIGHLRDLPKSKFGVDIENDFEPEYIKVRGRA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+ +K AE + LA+DPDREGEAI+WH+ + L D +N RV FHEIT+
Sbjct: 62 KTINELKKEADKAEKVYLATDPDREGEAISWHL-QFLLGLDPEDKN----RVEFHEITKE 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K A++ R ID NLV A ARR +D ++G+ ISP+LW+++ SAGRVQS AL LI
Sbjct: 117 NVKNAIKNPRTIDQNLVDAQQARRVMDRIVGYEISPILWKRVKSGLSAGRVQSVALKLIV 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DR+ EID+F P+EYWT+ A H +D F F + F + ++ I + + AK +
Sbjct: 177 DRQKEIDDFIPEEYWTITA------HHDVDKFKFDSE---FYGQIGKKVKITNESGAKKV 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+KI+ F+V+K K RK PY TSTLQQDA+N+L +S YTM+LAQ+L+EG+ +
Sbjct: 228 LEKIDKDKFEVVKIKKTKKRRKPQKPYTTSTLQQDASNRLGYSTKYTMQLAQQLFEGIDV 287
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
DG+ GLITYMRTD IS + E + I E+YG +A + Y K K +Q+AHE
Sbjct: 288 GDGSV-GLITYMRTDANRISKDIVNESLAYIKEKYGEKYAGK--GNTYAGKKKGSQDAHE 344
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT I+R P + L + KLY +IW R +A QM Q+ N + F+
Sbjct: 345 AIRPTSIKRSPIEIREYLTDQQYKLYKMIWERVVASQMADYEYLSTQILFDN--NGLAFK 402
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ F G+ + K NE + IL LK GD + +++ QH
Sbjct: 403 TNGKITIFDGYN----------VLSKANESEN------ILPELKEGDVISAKKIDKDQHF 446
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PPARY+E SLVK LEE GIGRPSTY++T+ + RNYV ++ R +YP G+ V+ FL
Sbjct: 447 TNPPARYTEASLVKTLEEFGIGRPSTYSATINQIISRNYVELEGRSIYPTDLGKTVNTFL 506
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF------------------- 929
F +V + FTA+ME LDN++ G WK LL ++ F
Sbjct: 507 QENFDDVINVEFTAEMEGALDNIALGDRYWKELLKSFYKDFEKDMKGVKKDSKDYKVRDE 566
Query: 930 --SSYC-TCAQSLHIHQVE--KMLEKT-FGDSLFAS--LPNKDRSCPVCGEGTLIFKVSR 981
C C ++L I K + T F D F + + CP C +GTLI KVS+
Sbjct: 567 ILDEKCPKCGKNLAIKHGRNGKFIGCTGFPDCDFTKSIVKSTGVKCPECEDGTLIEKVSK 626
Query: 982 FGAGYFIGCNQHPRCNY 998
G ++ GC+ +P+C++
Sbjct: 627 RGKRFY-GCDNYPKCDF 642
>gi|18310684|ref|NP_562618.1| DNA topoisomerase I [Clostridium perfringens str. 13]
gi|18145365|dbj|BAB81408.1| DNA topoisomerase I [Clostridium perfringens str. 13]
Length = 700
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 265/688 (38%), Positives = 378/688 (54%), Gaps = 77/688 (11%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KAK I+ YLG Y V S GHVRDL V +++++ +
Sbjct: 2 GQKLVIVESPAKAKTIEKYLGKNYVVEASMGHVRDLPKSQLGVDIENEYNPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L ++ ++ + LA+DPDREGEAI+WH+ +L+ + +EN R+ F+EIT+
Sbjct: 62 ELLSKLRKLAKKSDKIYLATDPDREGEAISWHLANVLKIDE--NEN---CRIEFNEITKD 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K +++ R+I+ NLV A ARR LD L+G+ ISPLLWR + SAGRVQSAAL LIC
Sbjct: 117 AVKNSIKHPRKINCNLVDAQQARRVLDRLVGYEISPLLWRNVKWGLSAGRVQSAALKLIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI +F P+EYWTV+ L K + SFP LT +K ++ I + +A I
Sbjct: 177 DREEEIKKFNPEEYWTVDVKLKKGKK------SFPVKLT---TKNKKKIEIKNKEQADQI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
++ + ++ K+ KNP P+ TSTLQQ+A+ KLNF TM +AQ+LYEGV+
Sbjct: 228 IDELKENEY-IVSKIKKGTKNKNPLAPFTTSTLQQEASKKLNFMTKKTMSVAQQLYEGVE 286
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GLITYMRTD + IS EA ++ + I E YG + PEE + +K KN Q+AH
Sbjct: 287 VKKFGTVGLITYMRTDSVRISKEAQEKALNFIDETYGKEYVPEES--RVYKGKKNIQDAH 344
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT + P + L D KLY+LIW R +A QM + ++I N D ++
Sbjct: 345 EAIRPTYVEITPEIAKANLSNDQYKLYALIWKRFIASQMATCILNTNSLEIKNGDYTL-- 402
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+S S ++F GF YE + E EE+ +L L+ + L +E KQH
Sbjct: 403 RASGSTIKFDGFMKVYEYISG------EEEES------VLLPELEENEVLKEESIEGKQH 450
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE + VK LEE GIGRPSTY T+ L R YV + +IL P G +V+
Sbjct: 451 FTQPPARYSEAAFVKLLEEKGIGRPSTYVPTISTLISRKYVDREKKILIPTELGFIVNDI 510
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
LS+YF ++ D FTA+ME +LDNV AG W ++ ++++ I + EK
Sbjct: 511 LSNYFKQIVDTDFTAEMEVKLDNVEAGKESWTHIVDEFFTPLKE--------DIEKAEKE 562
Query: 948 LEKT------------------------FGDSL----FASLPNK-------DRSCPVCGE 972
+ K FGD L + N D +CP+CG
Sbjct: 563 ISKVIIEDKVSDVPCDKCGRLMVIKHGRFGDFLACPGYPECQNTKPIVEEVDANCPLCG- 621
Query: 973 GTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
G ++ K S+ G F GC+ +P CN+++
Sbjct: 622 GKILVKRSKKG-NRFYGCSNYPECNFVS 648
>gi|257869682|ref|ZP_05649335.1| DNA topoisomerase I [Enterococcus gallinarum EG2]
gi|257803846|gb|EEV32668.1| DNA topoisomerase I [Enterococcus gallinarum EG2]
Length = 692
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 255/648 (39%), Positives = 367/648 (56%), Gaps = 46/648 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK I+ YLG Y+V+ S GH+RDL + ++D+ +
Sbjct: 4 KYLVIVESPAKAKTIEKYLGRNYKVVASVGHIRDLPKSKMGIDVENDYEPHYISIRGKGD 63
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+KS++ A AE + LASDPDREGEAIAWH+ +L D +N RVVF+EIT+ +
Sbjct: 64 VIKSLRSAAKKAEKVYLASDPDREGEAIAWHLAFLLGL-DLKEKN----RVVFNEITKDA 118
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A + R ID +LV A ARR LD L+G++ISP+LWRK+ SAGRVQS AL +I D
Sbjct: 119 VKAAFKEPRTIDVDLVDAQQARRVLDRLVGYSISPILWRKVKKGLSAGRVQSVALKIIID 178
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI EF P+EYW+++ + + + L + K N SI K++
Sbjct: 179 REKEIREFIPEEYWSIDG---NFKKATKKFKAAFWGLDGKKKKLPNAESI------KEVT 229
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++++ ++QV K K+ R P+ TS+LQQ+AA KLNF TM +AQ+LYEG+ L
Sbjct: 230 ERLDGKDYQVTKVEKKERKRNPSAPFTTSSLQQEAARKLNFRTRKTMMVAQQLYEGIPLG 289
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E I YGS + G K K + AQ+AHEA
Sbjct: 290 KQGTVGLITYMRTDSTRIADTAKGEAAEFIETTYGSAFSAHGG--KKIKNAQGAQDAHEA 347
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
+RPT + R P + LD+D LKLY LIWSR +A QM PA + ++V + ++F +
Sbjct: 348 VRPTSVMRTPEEMEKYLDKDQLKLYRLIWSRFVASQMTPAILDTMKVTL--QQNGVIFIA 405
Query: 770 SCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ S+++F GF Y E D G KE++EN IL L GD + +E KQH
Sbjct: 406 NGSKIKFKGFMQVYVEGRDDG----KEDKEN-------ILPELNEGDVVQSISIEPKQHF 454
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPPAR+SE +L+K LEE G+GRPSTYA TL+ +Q R YV + + P G +V++ +
Sbjct: 455 TQPPARFSEATLIKTLEENGVGRPSTYAPTLETIQRRYYVKLTQKRFEPTELGEIVNSLI 514
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F ++ D FTA+ME+ LD++ AG EW ++ ++ F + A+ +I +++
Sbjct: 515 EEFFPQIVDTHFTAEMESSLDSIEAGKQEWIKVVDQFYRPFEKELSNAEE-NIEKIQIKD 573
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E D C +CG ++ K+ R+G F C+ P C
Sbjct: 574 EPAGFD------------CDICGH-PMVIKLGRYGK--FYACSNFPDC 606
>gi|310822349|ref|YP_003954707.1| topoisomerase [Stigmatella aurantiaca DW4/3-1]
gi|309395421|gb|ADO72880.1| topoisomerase [Stigmatella aurantiaca DW4/3-1]
Length = 842
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 288/774 (37%), Positives = 403/774 (52%), Gaps = 80/774 (10%)
Query: 318 ATKASLQRQTSEEMVIVPRGQNTQNPLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPS 377
A+ A+++ EE PRG+ P Y +VVVES KAK I+ YLG Y V S
Sbjct: 46 ASLATVEVSADEEEEATPRGKG---PHY------LVVVESPAKAKTIKKYLGTGYTVKAS 96
Query: 378 YGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAI 437
GHV+DL V + DF ++V L +K A + + LA+DPDREGEAI
Sbjct: 97 VGHVKDLPKSKIGVDVEHDFQPEYQVIKGKEKVLNELKKAAKAVDKVYLATDPDREGEAI 156
Query: 438 AWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYL 497
AWHI E L +D+ RV+F+EIT+ +I+ A+ R ++ + RR LD L
Sbjct: 157 AWHIFEELGHKDSY-------RVLFNEITKKAIQEAIAQPRHLNQESYDSQQTRRILDRL 209
Query: 498 IGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSL 557
+G+ ISPLLW+K+ SAGRVQS A+ LIC+RE EI F PQEYWT++A+L+
Sbjct: 210 VGYQISPLLWKKIRRGLSAGRVQSVAVRLICEREDEIKAFLPQEYWTLDALLEGASGPP- 268
Query: 558 DTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYIT 617
F A L+ K++ +L T+A + ++ A F V K +R R P P+IT
Sbjct: 269 ---PFKAKLSKIDGKKV-ELKDRETTDA--LVAELQGAEFTVAKVDRRERRRNAPAPFIT 322
Query: 618 STLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRS 677
S LQQ+AAN+L+F+A TM LAQ+LYEG+ + + LITYMRTD +SD+A K++R
Sbjct: 323 SKLQQEAANRLHFTAKKTMTLAQRLYEGIPMGEEGQTALITYMRTDSTRLSDDAVKQVRE 382
Query: 678 LIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIR----RLPAMLSGLLDEDCLKL 733
I +YG PEE P Y K KNAQ+AHEAIRP + R+ + ++D +L
Sbjct: 383 FIGNQYGGDFLPEE-PVSYRSK-KNAQDAHEAIRPVSLEYPPERVRPFFEQMGEQDMFRL 440
Query: 734 YSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAY-------EDV 786
Y LIW+R +ACQM+PA Q DI A FR+S S ++F G+ Y E+
Sbjct: 441 YELIWNRFVACQMKPAVYDQTSADI--AAGRATFRASGSTLKFAGYLRVYGAGLTPEEEA 498
Query: 787 DAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEE 846
+ + +E D EA L L GD L L ++ +QH TQPP R+SE +LVK+LEE
Sbjct: 499 EKEKAKAAGDEATDSDEATGELPPLNDGDKLRLQKLLNEQHFTQPPPRFSEATLVKELEE 558
Query: 847 LGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMET 906
GIGRPSTYA+ L +QD+ YV P G M + L +F + +FTAD+E
Sbjct: 559 RGIGRPSTYAAILSTIQDKKYVEKLEGRFRPTDLGVMTNEMLVKHFPKEMAVAFTADLEE 618
Query: 907 ELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRS 966
+LD +S G WK +L D++ F A++ + V++ KT D
Sbjct: 619 KLDQISEGGASWKAVLHDFYGPFKETLEKAEA-EMRDVKREEIKT------------DIP 665
Query: 967 CPVCGEGTLIFKVSRFG-AGYFIGCNQHPRCNYIAKTLYGDD-------DEEDTLQRNTN 1018
C CG +I +FG G+F+ C+ +P C K D +EE T ++ N
Sbjct: 666 CEKCGNPLVI----KFGKMGHFLACSNYPDCKN-TKDFKRDAEGKIVIVEEETTDEKCEN 720
Query: 1019 VDEPKLIGH-----------HPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRAS 1061
+P +I +P K S P V E + GYL +R S
Sbjct: 721 CGKPMVIKRGRFGRFLACSGYPDCK-----TSKPISIGVNCPECKQGYLTERRS 769
>gi|452203521|ref|YP_007483654.1| DNA topoisomerase I [Dehalococcoides mccartyi DCMB5]
gi|452110580|gb|AGG06312.1| DNA topoisomerase I [Dehalococcoides mccartyi DCMB5]
Length = 703
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 249/655 (38%), Positives = 367/655 (56%), Gaps = 46/655 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KA+ I LG + ++ + GH+RDL + V +++F+ + A +
Sbjct: 5 LVIVESPAKARTISKMLGKDFNIMATMGHIRDLPKSTLGVDVENNFTPKYVSLKAKAKVI 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A+ ++ + LA+DPDREGEAIAWHI E+ + + RVVFHEIT+ +I
Sbjct: 65 KELKEAVKNSKAIYLATDPDREGEAIAWHISEVTKANLS-----NPKRVVFHEITKEAID 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A + RE+D +LV A ARR LD L+G+ +SPLLWRK+ SAGRVQS +L +I DRE
Sbjct: 120 KAFKNTRELDMDLVNAQQARRVLDRLVGYKLSPLLWRKVQRGLSAGRVQSVSLKIIVDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++F EYW +EA+L KK + + +F A L + +K +L I + +EA I+++
Sbjct: 180 REIEKFVSTEYWNIEALLSKK----VKSAAFKATLAGYVTK--GKLEIHNESEADQIKKE 233
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ +++QV+K ++S +R++P P+ITSTLQQ+A KL FSA TM +AQ+LYEG+ +
Sbjct: 234 LEVSDYQVLKIKRKSNLRQSPAPFITSTLQQEAWRKLRFSAKQTMVIAQQLYEGLNVEGE 293
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD +++ A E R I E+YG + P++ R + KVK AQEAHEAIR
Sbjct: 294 GEVGLITYMRTDSTNVARTAVAETRDYITEKYGPAYLPKQA-RVFSSKVKGAQEAHEAIR 352
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES----IVF 767
PT I R P + L D KLY LIW R MA QM PA +DI + +
Sbjct: 353 PTRINRTPDFIKKSLSADQFKLYQLIWQRMMASQMSPAVFDNTTIDIEAKHQPSKTRYLL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S F GF Y + +++ L ++ G+ L L ++ QH
Sbjct: 413 RTTSSVNTFPGFTIVYIEGKDEDEEKEQSS----------LPPMEEGEELKLKSLDATQH 462
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RY+E +L+K LE+ GIGRPSTYA T+ +Q+R Y+T L P G +V+
Sbjct: 463 FTQPPPRYTEATLIKALEQNGIGRPSTYAPTISTIQEREYITKLKGSLKPSELGMLVNDL 522
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F ++ FTA ME ELD ++ +W ++ ++ F I ++E
Sbjct: 523 LVEHFPDIIGIDFTAAMEAELDKIATEKLDWVPIIRRFYEPF-----------IKEIEAA 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPR----CNY 998
EK + + D CP C L+ K RFG FI C+++ + C Y
Sbjct: 572 SEKI--EKIKPPEEELDELCPECN-AKLVIKRGRFGK--FIACSRYSKEDDGCRY 621
>gi|225859057|ref|YP_002740567.1| DNA topoisomerase I [Streptococcus pneumoniae 70585]
gi|225720833|gb|ACO16687.1| DNA topoisomerase I [Streptococcus pneumoniae 70585]
Length = 695
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 369/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + G+ + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVVGNVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|410476667|ref|YP_006743426.1| DNA topoisomerase I [Streptococcus pneumoniae gamPNI0373]
gi|406369612|gb|AFS43302.1| DNA topoisomerase I [Streptococcus pneumoniae gamPNI0373]
Length = 695
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWTV+AV K T F A K+ + + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ ++ R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIRKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|389573266|ref|ZP_10163341.1| DNA topoisomerase I [Bacillus sp. M 2-6]
gi|388426963|gb|EIL84773.1| DNA topoisomerase I [Bacillus sp. M 2-6]
Length = 691
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 257/645 (39%), Positives = 361/645 (55%), Gaps = 44/645 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + DF + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQLGVDTEHDFEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L + + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLDLDLS-----SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R ID +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 DSFKHPRMIDMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+EFKP+EYWT++ K + SF A K+ + + + K+I K
Sbjct: 180 NEINEFKPEEYWTIDGTFLKGKE------SFEASFFGVNGKKH---PLKTKEDVKEILSK 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + F V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LKGSKFSVEKVTKKERKRNPAVPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGKE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A +E+ + I + YG + ++ KK +NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISNTAIEEVSAFIDQTYGKNFL--NTTKRTAKKNENAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT R PA + +L D L+LY LIW R +A QM PA + + VD+ N + FR++
Sbjct: 349 PTSTLRKPADVKHVLSRDQLRLYKLIWERFVASQMAPAVLDTMSVDLEN--NGLTFRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y E +++ E +L LK GD + ++E +QH TQP
Sbjct: 407 SKVKFPGFMKVY----------VEGKDDQLEEKDKMLPDLKEGDTVLSKDIEPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G +V + +
Sbjct: 457 PPRYTEARLVKTLEELGIGRPSTYAPTLDTIQKRGYVALDNKRFIPTELGEIVLNLIIEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME ELD+V G EW ++ ++ F+ + + E +++
Sbjct: 517 FPEIINVEFTAKMEKELDSVEEGTIEWVRIIDSFYQDFAK--------RVEKAEAEMQEV 568
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +A + C CG +++K+ R+G F+ C+ P C
Sbjct: 569 EIEPEYAGV-----DCEECGH-PMVYKMGRYGK--FMACSNFPDC 605
>gi|418966635|ref|ZP_13518361.1| DNA topoisomerase I [Streptococcus mitis SK616]
gi|383346845|gb|EID24859.1| DNA topoisomerase I [Streptococcus mitis SK616]
Length = 695
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/651 (38%), Positives = 367/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ L + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGVDGKK---LKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ + +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTNKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|168215352|ref|ZP_02640977.1| DNA topoisomerase I [Clostridium perfringens CPE str. F4969]
gi|170713268|gb|EDT25450.1| DNA topoisomerase I [Clostridium perfringens CPE str. F4969]
Length = 700
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 268/688 (38%), Positives = 379/688 (55%), Gaps = 77/688 (11%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KAK I+ YLG Y V S GHVRDL V +++++ +
Sbjct: 2 GQKLVIVESPAKAKTIEKYLGKNYVVEASMGHVRDLPKSQLGVDIENEYNPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L ++ ++ + LA+DPDREGEAI+WH+ +L+ + +EN R+ F+EIT+
Sbjct: 62 ELLSKLRKLAKKSDKIYLATDPDREGEAISWHLANVLKIDE--NEN---CRIEFNEITKD 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K +++ R+I+ NLV A ARR LD L+G+ ISPLLWR + SAGRVQSAAL LIC
Sbjct: 117 AVKNSIKHPRKINCNLVDAQQARRVLDRLVGYEISPLLWRNVKWGLSAGRVQSAALKLIC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI +F P+EYWTV+ L K + SFP LT +K ++ I + +A I
Sbjct: 177 DREEEIKKFNPEEYWTVDVKLKKGKK------SFPVKLT---TKNKKKIEIKNKEQADQI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+++ + ++ K+ KNP P+ TSTLQQ+A+ KLNF TM +AQ+LYEGV+
Sbjct: 228 IEELKENEY-IVSKIKKGTKNKNPLAPFTTSTLQQEASKKLNFMTKKTMSVAQQLYEGVE 286
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GLITYMRTD + IS EA ++ + I E YG + PEE PR Y K KN Q+AH
Sbjct: 287 VKKFGTVGLITYMRTDSVRISKEAQEKALNFIDETYGKEYVPEE-PRVY-KGKKNIQDAH 344
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT + P + L D KLY+LIW R +A QM + ++I N + ++
Sbjct: 345 EAIRPTYVEITPEIAKANLSNDQYKLYTLIWKRFIASQMATCVLNTNSLEIKNGNYTL-- 402
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R+S S ++F GF YE Y EE E +L L+ + L +E KQH
Sbjct: 403 RASGSTIKFDGFMKVYE--------YILGEE----EESVLLPELEENEVLKEESIEGKQH 450
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE + VK LEE GIGRPSTY T+ L R YV + +IL P G +V+
Sbjct: 451 FTQPPARYSEAAFVKLLEEKGIGRPSTYVPTISTLISRKYVDREKKILIPTELGFIVNDI 510
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
LS+YF ++ D FTA+ME +LDNV AG W ++ ++++ I + EK
Sbjct: 511 LSNYFKQIVDTDFTAEMEVKLDNVEAGKESWTHIVDEFFTPLKE--------DIEKAEKE 562
Query: 948 LEKT------------------------FGDSL----FASLPNK-------DRSCPVCGE 972
+ K FGD L + N D +CP+CG
Sbjct: 563 ISKVIIEDKVSDVPCDKCGRLMVIKHGRFGDFLACPGYPECQNTKPIVEEVDANCPLCG- 621
Query: 973 GTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
G ++ K S+ G F GC+ +P CN+++
Sbjct: 622 GKILVKRSKKG-NRFYGCSNYPECNFVS 648
>gi|167037676|ref|YP_001665254.1| DNA topoisomerase I [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|320116091|ref|YP_004186250.1| DNA topoisomerase I [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|166856510|gb|ABY94918.1| DNA topoisomerase I [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|319929182|gb|ADV79867.1| DNA topoisomerase I [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 693
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 250/654 (38%), Positives = 369/654 (56%), Gaps = 54/654 (8%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
KS+V+VES KAK I +LG ++V S GHVRDL + +++F+ +
Sbjct: 2 AKSLVIVESPAKAKTISKFLGKNFKVAASMGHVRDLPKSQLGIDIENNFAPRYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV---ARVVFHEI 465
++++K A+ + LA+DPDREGEAI+WHI ++L N+ + R+ FHEI
Sbjct: 62 AIIENLKKEAKDADKIFLATDPDREGEAISWHIAQLL--------NLNIEEPCRIEFHEI 113
Query: 466 TEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALS 525
T+ +++ AL++ R ID NLV A ARR LD L+G+ ISPLLW+K+ SAGRVQS A
Sbjct: 114 TKNAVQTALKSPRSIDLNLVDAQQARRILDRLVGYKISPLLWKKIKRGLSAGRVQSVAAR 173
Query: 526 LICDREMEIDEFKPQEYWTVEAVL-DKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTE 584
LICDRE EI+ F P+EYW++ +L DKK S + F + +++ + + +
Sbjct: 174 LICDREREIEAFVPEEYWSITVILSDKKNSGKFE--------AKFYGTKEDKVELKTKED 225
Query: 585 AKDIEQKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLY 643
I ++ +I K + ++NP+ P+ITSTLQQ+A+ KL F+A TM +AQ+LY
Sbjct: 226 VDKILAALSEE--YIIDKVKTGVKKRNPSPPFITSTLQQEASRKLGFTAKKTMLIAQQLY 283
Query: 644 EGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA 703
EGV++ + GLITY+RTD +++EA E+ I E++G +A E Y K N
Sbjct: 284 EGVEIKGEGSVGLITYIRTDSTRVANEAKAEVYKYIVEKFGKGYANPEA--NYVSKRANV 341
Query: 704 QEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADE 763
Q+AHEAIRPT I R P + L D KLY L+WSR +A QM PA + +DI N
Sbjct: 342 QDAHEAIRPTSIYRDPESIKDSLTPDQYKLYKLVWSRFIASQMAPAIYDTVSMDIVN--N 399
Query: 764 SIVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
VF++S S ++FLGF Y E D +E EE + L+ G L+L E+
Sbjct: 400 GYVFKASGSSIKFLGFMTVYVEGTDM-----QEEEEK-------TVPVLQEGTKLFLEEL 447
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
+ QH TQPP RY+E SL+K+LEE GIGRPSTYA T+ L +R YV + L P G
Sbjct: 448 KPMQHFTQPPPRYTEASLIKELEEKGIGRPSTYAPTISTLLERGYVVKDKKNLKPTELGF 507
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ L +FS++ D FTA+ME +LD + G +W ++ +++ F ++L I
Sbjct: 508 IVTDALKEFFSKIVDVKFTAEMEEQLDKIEEGQVKWYEVVEEFYKDFY------KTLKIA 561
Query: 943 QVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ E+ + + D C +CG ++ K R+G F+ C+ P C
Sbjct: 562 E-----EQMEEIEVKEEVEVTDIKCELCGR-NMVVKKGRYGK--FLACSGFPEC 607
>gi|392940899|ref|ZP_10306543.1| LOW QUALITY PROTEIN: DNA topoisomerase I, bacterial
[Thermoanaerobacter siderophilus SR4]
gi|392292649|gb|EIW01093.1| LOW QUALITY PROTEIN: DNA topoisomerase I, bacterial
[Thermoanaerobacter siderophilus SR4]
Length = 693
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 250/654 (38%), Positives = 369/654 (56%), Gaps = 54/654 (8%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
KS+V+VES KAK I +LG ++V S GHVRDL + +++F+ +
Sbjct: 2 AKSLVIVESPAKAKTISKFLGKNFKVAASMGHVRDLPKSQLGIDIENNFAPRYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV---ARVVFHEI 465
++++K A+ + LA+DPDREGEAI+WHI ++L N+ + R+ FHEI
Sbjct: 62 AIIENLKKEAKDADKIFLATDPDREGEAISWHIAQLL--------NLNIEEPCRIEFHEI 113
Query: 466 TEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALS 525
T+ +++ AL++ R ID NLV A ARR LD L+G+ ISPLLW+K+ SAGRVQS A
Sbjct: 114 TKNAVQTALKSPRSIDLNLVDAQQARRILDRLVGYKISPLLWKKIKRGLSAGRVQSVAAR 173
Query: 526 LICDREMEIDEFKPQEYWTVEAVL-DKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTE 584
LICDRE EI+ F P+EYW++ +L DKK S + F + +++ + + +
Sbjct: 174 LICDREREIEAFVPEEYWSITVILSDKKNSGKFE--------AKFYGTKEDKVELKTKED 225
Query: 585 AKDIEQKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLY 643
I ++ +I K + ++NP+ P+ITSTLQQ+A+ KL F+A TM +AQ+LY
Sbjct: 226 VDKILAALSEE--YIIDKVKTGVKKRNPSPPFITSTLQQEASRKLGFTAKKTMLIAQQLY 283
Query: 644 EGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA 703
EGV++ + GLITY+RTD +++EA E+ I E++G +A E Y K N
Sbjct: 284 EGVEIKGEGSVGLITYIRTDSTRVANEAKAEVYKYIVEKFGKEYANPEA--NYASKRANV 341
Query: 704 QEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADE 763
Q+AHEAIRPT I R P + L D KLY L+WSR +A QM PA + +DI N
Sbjct: 342 QDAHEAIRPTSIYRDPESIKDSLTPDQYKLYKLVWSRFIASQMAPAIYDTVSMDIVN--N 399
Query: 764 SIVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
VF++S S ++FLGF Y E D +E EE + L+ G L+L E+
Sbjct: 400 GYVFKASGSSIKFLGFMTVYVEGTDM-----QEEEEK-------TVPVLQEGTKLFLEEL 447
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
+ QH TQPP RY+E SL+K+LEE GIGRPSTYA T+ L +R YV + L P G
Sbjct: 448 KPMQHFTQPPPRYTEASLIKELEEKGIGRPSTYAPTISTLLERGYVVKDKKNLKPTELGF 507
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ L +FS++ D FTA+ME +LD + G +W ++ +++ F ++L I
Sbjct: 508 IVTDALKEFFSKIVDVKFTAEMEEQLDKIEEGQVKWYEVVEEFYKDFY------KTLKIA 561
Query: 943 QVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ E+ + + D C +CG ++ K R+G F+ C+ P C
Sbjct: 562 E-----EQMEEIEVKEEVEVTDIKCELCGRN-MVVKKGRYGK--FLACSGFPEC 607
>gi|326389490|ref|ZP_08211057.1| DNA topoisomerase I [Thermoanaerobacter ethanolicus JW 200]
gi|325994495|gb|EGD52920.1| DNA topoisomerase I [Thermoanaerobacter ethanolicus JW 200]
Length = 693
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 250/654 (38%), Positives = 369/654 (56%), Gaps = 54/654 (8%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
KS+V+VES KAK I +LG ++V S GHVRDL + +++F+ +
Sbjct: 2 AKSLVIVESPAKAKTISKFLGKNFKVAASMGHVRDLPKSQLGIDIENNFAPRYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV---ARVVFHEI 465
++++K A+ + LA+DPDREGEAI+WHI ++L N+ + R+ FHEI
Sbjct: 62 AIIENLKKEAKDADKIFLATDPDREGEAISWHIAQLL--------NLNIEEPCRIEFHEI 113
Query: 466 TEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALS 525
T+ +++ AL++ R ID NLV A ARR LD L+G+ ISPLLW+K+ SAGRVQS A
Sbjct: 114 TKNAVQTALKSPRSIDLNLVDAQQARRILDRLVGYKISPLLWKKIKRGLSAGRVQSVAAR 173
Query: 526 LICDREMEIDEFKPQEYWTVEAVL-DKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTE 584
LICDRE EI+ F P+EYW++ +L DKK S + F + +++ + + +
Sbjct: 174 LICDREREIEAFVPEEYWSITVILSDKKNSGKFE--------AKFYGTKEDKVELKTKED 225
Query: 585 AKDIEQKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLY 643
I ++ +I K + ++NP+ P+ITSTLQQ+A+ KL F+A TM +AQ+LY
Sbjct: 226 VDKILAALSEE--YIIDKVKTGVKKRNPSPPFITSTLQQEASRKLGFTAKKTMLIAQQLY 283
Query: 644 EGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA 703
EGV++ + GLITY+RTD +++EA E+ I E++G +A E Y K N
Sbjct: 284 EGVEIKGEGSVGLITYIRTDSTRVANEAKAEVYKYIVEKFGKEYANPEA--NYASKRANV 341
Query: 704 QEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADE 763
Q+AHEAIRPT I R P + L D KLY L+WSR +A QM PA + +DI N
Sbjct: 342 QDAHEAIRPTSIYRDPESIKDSLTPDQYKLYKLVWSRFIASQMAPAIYDTVSMDIVN--N 399
Query: 764 SIVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
VF++S S ++FLGF Y E D +E EE + L+ G L+L E+
Sbjct: 400 GYVFKASGSSIKFLGFMTVYVEGTDM-----QEEEEK-------TVPVLQKGTKLFLEEL 447
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
+ QH TQPP RY+E SL+K+LEE GIGRPSTYA T+ L +R YV + L P G
Sbjct: 448 KPMQHFTQPPPRYTEASLIKELEEKGIGRPSTYAPTISTLLERGYVVKDKKNLKPTELGF 507
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ L +FS++ D FTA+ME +LD + G +W ++ +++ F ++L I
Sbjct: 508 IVTDALKEFFSKIVDVKFTAEMEEQLDKIEEGQVKWYEVVEEFYKDFY------KTLKIA 561
Query: 943 QVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ E+ + + D C +CG ++ K R+G F+ C+ P C
Sbjct: 562 E-----EQMEEIEVKEEVEVTDIKCELCGRN-MVVKKGRYGK--FLACSGFPEC 607
>gi|297584027|ref|YP_003699807.1| DNA topoisomerase I [Bacillus selenitireducens MLS10]
gi|297142484|gb|ADH99241.1| DNA topoisomerase I [Bacillus selenitireducens MLS10]
Length = 689
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 258/646 (39%), Positives = 353/646 (54%), Gaps = 47/646 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG Y V S GHV DL V ++++ + L
Sbjct: 5 LVIVESPAKAKTIGKYLGKKYNVKASMGHVIDLPKSQMGVDVENNYEPKYITIRGKGPIL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ + L+ ++ + RVVF+EIT+ +IK
Sbjct: 65 KDLKQAAKKAKRIYLAADPDREGEAIAWHLADSLKIEEG-----SKCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + REI+ NLV A ARR LD L+G+NISPLLW+K+ SAGRVQS A+ +I DRE
Sbjct: 120 ESFKHPREINTNLVDAQQARRVLDRLVGYNISPLLWKKVKKGLSAGRVQSVAVKMIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F P+EYW++ A L K D F A FQ + + S + DI +
Sbjct: 180 NEINAFVPEEYWSITAHLSK------DGKQFEAK---FQQLDGEKKPLSSKEDVDDILNR 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ +F+V +R R P+ITS+LQQ+AA KLNF A TM LAQ+LYEGV L
Sbjct: 231 LEGGSFEVTGIKRRERKRNPVAPFITSSLQQEAARKLNFRAKKTMMLAQQLYEGVDLGKS 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD +SD A E + I YG + E K KK + AQ+AHEA+R
Sbjct: 291 GTVGLITYMRTDSTRLSDTAKGEAKEYIGIHYGEEYHQEP---KAAKKNEKAQDAHEAVR 347
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R P + L D +LY LIW R +A QM PA + + VD+ +FR++
Sbjct: 348 PTSVMRDPKAMKPHLSRDQYRLYKLIWERMVASQMAPAVMDTMSVDLDV--NGAMFRATG 405
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+++F GF Y E D G EE D+ +L L GD +VE QH TQ
Sbjct: 406 SKLKFAGFMKVYIEGNDEG------KEEKDK-----LLPDLNQGDKPASEKVEPAQHFTQ 454
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LV+ +EELGIGRPSTYA TL +Q R YV+++ + P G +V +
Sbjct: 455 PPPRYTEARLVRTMEELGIGRPSTYAPTLDTIQRRGYVSLEEKRFVPTELGTIVLEMIEE 514
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F E+ + FTADMET LD+V G EW ++ +++ F A+ E+M E
Sbjct: 515 FFPEILNVEFTADMETRLDSVEEGSEEWIRIIDEFYQGFEKRLKYAE-------EEMKEV 567
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C CG +++K+ R+G F+ C+ P C
Sbjct: 568 EIKDEPAGE------DCEKCGH-EMVYKMGRYGK--FMACSNFPNC 604
>gi|336113799|ref|YP_004568566.1| DNA topoisomerase I [Bacillus coagulans 2-6]
gi|335367229|gb|AEH53180.1| DNA topoisomerase I [Bacillus coagulans 2-6]
Length = 691
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/645 (40%), Positives = 355/645 (55%), Gaps = 44/645 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y V S GHVRDL V DD F+ + L
Sbjct: 5 LVIVESPAKAKTIEKYLGKKYRVKASMGHVRDLPKSQMGVDVDDHFTPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L +H + RVVF+EIT+ +IK
Sbjct: 65 KDLKNAAKKAKKVYLAADPDREGEAIAWHLANSLNLD--VHSD---CRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+NISPLLW+K+ SAGRVQS A+ LI DRE
Sbjct: 120 ESFKHPRPINMDLVDAQQARRILDRLVGYNISPLLWKKVKKGLSAGRVQSVAVRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI F P+EYWT+ K + DTF + + K+L S + K I
Sbjct: 180 NEIKSFVPEEYWTIAGSFKKGK----DTFQASFYGVDGKKKQLK-----SEADVKKITGL 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S FQV + + R P+ TS+LQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LKSDKFQVSSVTHKEKKRNPAPPFTTSSLQQEAARKLNFRAKKTMMVAQQLYEGIDLGKE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD ISD A E I E++G ++ +E ++ KK NAQ+AHE IR
Sbjct: 291 GTVGLITYMRTDSTRISDVAKTEANQYIQEKFGENYLRQEERKE--KKQANAQDAHEGIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT I R P L L D KLY LIW R MA QM PA + + + N +++FR+S
Sbjct: 349 PTSIFRDPGSLKSFLSRDQYKLYKLIWERFMASQMAPAILDTMSATLANG--TVLFRASG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+++F GF Y E ++ + E L L+ GD ++ +E KQH TQP
Sbjct: 407 SKIQFPGFMKVY----------VEGSDDQQEEGERYLPHLEEGDVVHSESIEPKQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPSTYA TL +Q R YV ++++ P G +V + +
Sbjct: 457 PPRYTEARLVKTLEELGIGRPSTYAPTLDTIQKRGYVALENKRFVPTELGEIVLELIREF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ D FTADME +LD + G W ++ ++ F + A++ + ++E E+T
Sbjct: 517 FPEIIDVEFTADMEKDLDEIEEGKVPWVQVIDAFYQNFEARLKKAET-EMEKIEIKDEET 575
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
C +CG +++K+ R+G F+ C+ P C
Sbjct: 576 ------------GEMCELCG-SPMVYKMGRYGK--FMACSNFPDC 605
>gi|225868568|ref|YP_002744516.1| DNA topoisomerase I [Streptococcus equi subsp. zooepidemicus]
gi|225701844|emb|CAW99300.1| DNA topoisomerase I [Streptococcus equi subsp. zooepidemicus]
Length = 710
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 250/652 (38%), Positives = 371/652 (56%), Gaps = 59/652 (9%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D+ + +
Sbjct: 28 NLVIVESPAKAKTIEKYLGRQYKVVASVGHIRDLKKSSMSIDFDNHYEPQYINIRGKGPL 87
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ ++K A+ + LASDPDREGEAI+WH+ +L D N RVVF+EIT+ +I
Sbjct: 88 INALKKEAKNAKKVYLASDPDREGEAISWHLSHILGL-DPDDNN----RVVFNEITKEAI 142
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV + ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 143 KEAFEGPRKIDMDLVDSQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 202
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F P+EYW+++ + K T F A K++ + ++ + K +
Sbjct: 203 EHEIKAFVPEEYWSIDGLFKK------GTKKFQASFYGLDGKKM---KLNTNDDVKFVLS 253
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL-P 649
+++S +F V K K+ R P PY TS+LQQDAANK+NF TM +AQ+LYEG+ L P
Sbjct: 254 QLSSDDFMVSKVEKKERRRHAPLPYTTSSLQQDAANKINFRTRKTMMVAQQLYEGISLGP 313
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA---QEA 706
+GT GLITYMRTD IS A + I ER+GS ++ K+ +VKNA Q+A
Sbjct: 314 NGTQ-GLITYMRTDSTRISPVAQNDAAGFIVERFGSQYS------KHGNRVKNATGAQDA 366
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP+++ P ++ LD+D LKLY+LIW+R +A QM A ++V++ S++
Sbjct: 367 HEAIRPSNVNHTPEAIAKFLDKDQLKLYTLIWNRFVASQMTAAVFDTVKVNL--EQNSVL 424
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
F ++ S+++F G+ A Y D D + L + G+ + + +Q
Sbjct: 425 FVANGSQMKFDGYMAVYNDSDKSKM----------------LPEMTEGEVVKKVTLTPEQ 468
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARYSE SL+K LEE G+GRPSTYA TL V+Q R YV + ++ P G +V+
Sbjct: 469 HFTQPPARYSEASLIKTLEENGVGRPSTYAPTLDVIQRRYYVKLAAKRFEPTELGEIVNQ 528
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ +F ++ D FTADME +LD + G W+ ++ ++ F T A++ ++EK
Sbjct: 529 LIVEFFPDIVDVKFTADMEDKLDQIEIGKEAWQNVIDQFYKPFVKELTKAET----EIEK 584
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+ K C +CG ++ K+ RFG F C+ P C++
Sbjct: 585 IQIKDEPAGF---------DCELCGH-PMVVKLGRFGK--FYACSNFPECHH 624
>gi|134299831|ref|YP_001113327.1| DNA topoisomerase I [Desulfotomaculum reducens MI-1]
gi|134052531|gb|ABO50502.1| DNA topoisomerase I [Desulfotomaculum reducens MI-1]
Length = 710
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/678 (38%), Positives = 379/678 (55%), Gaps = 58/678 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I YLG Y V S GHVRDL V ++ FS +
Sbjct: 3 KTLVIVESPAKAKSIGKYLGKNYTVKASMGHVRDLPKSQFGVDVENAFSPKYITIRGKGD 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
LK ++ A+ ++++LASDPDREGEAIAWH+ ++L+ + T R+ F+EIT+ +
Sbjct: 63 ILKELRSAVKKVDHVLLASDPDREGEAIAWHLTKLLEIDEE-----TPCRIEFNEITKNA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A++ R ID + V A ARR LD L+G+N+SPLLWRK+ SAGRVQS A+ LICD
Sbjct: 118 IQAAVKQPRRIDVDRVNAQQARRILDRLVGYNLSPLLWRKVKKGLSAGRVQSVAVRLICD 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI F P+EYWT+ K F A L ++K++ I + I
Sbjct: 178 REEEIQAFIPEEYWTLTGKFLKSAKSP-----FEAKLHKHKNKKI---VIPNQETMDKIL 229
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++ A + V +++ +R P+ TS+LQQ+A+ KLNF++ TM +AQ+LYEG+ L
Sbjct: 230 AELKGAAYVVSNVTRKERLRNPAPPFTTSSLQQEASRKLNFTSRKTMVVAQQLYEGIDLG 289
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GL+TY+RTD +S+ A +E RS I ER+G + P++ PR+ K K Q+AHEA
Sbjct: 290 KEGPVGLVTYIRTDSTRVSETAIEETRSFIMERFGPAYVPKQ-PRQVVAKGK-VQDAHEA 347
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT + R P + L D KLY LIWSR +A QM A + +DI D +FR+
Sbjct: 348 IRPTSVNRDPDSIKQYLTNDQFKLYKLIWSRFLASQMASAVIDTTSMDISAGD--YLFRA 405
Query: 770 SCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ S ++F GF Y E D G +KE E ++L L GD + ++ KQH
Sbjct: 406 TGSIIKFPGFMQVYIEGNDDG---HKEEE--------SVLPELAKGDKVQAKDLTPKQHF 454
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RY++ +LVK LEE GIGRPSTYA ++ +Q R YV +++ YP G +V L
Sbjct: 455 TQPPPRYTDATLVKVLEEKGIGRPSTYAPIVETIQRRGYVVRENKQFYPTELGVIVVDLL 514
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYC-TCAQSLHIHQV--- 944
++F E+ + FTADME +LD ++ G +W G+L D++ FS T +++ QV
Sbjct: 515 KNHFPEIINVEFTADMEKKLDQIAEGEQQWAGVLRDFYEPFSQTLETAEEAIGKVQVADE 574
Query: 945 --EKMLEKT----------FGDSL----FASLPNKDR-------SCPVCGEGTLIFKVSR 981
E++ E+ +G L F N CP C EG ++ + S+
Sbjct: 575 VSEEICEQCGRNMVIKLGRYGKFLACPGFPDCRNTKPLLEPTGVGCPKC-EGEMVLRRSK 633
Query: 982 FGAGYFIGCNQHPRCNYI 999
G ++ GC+++P C ++
Sbjct: 634 KGRKFY-GCSRYPECEFV 650
>gi|450086464|ref|ZP_21853659.1| DNA topoisomerase I [Streptococcus mutans NV1996]
gi|449219422|gb|EMC19389.1| DNA topoisomerase I [Streptococcus mutans NV1996]
Length = 705
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 248/651 (38%), Positives = 367/651 (56%), Gaps = 57/651 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D+++ +
Sbjct: 21 KNLVIVESPAKAKTIEKYLGRSYKVVASVGHIRDLKKSSMSIDFDNNYEPQYINIRGKGP 80
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ S+K A+ + LASDPDREGEAI+WH+ +L D +N RVVF+EIT+ +
Sbjct: 81 LINSLKKEAKNAKQIFLASDPDREGEAISWHLAHILDL-DLKGKN----RVVFNEITKDA 135
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A R+ID +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI D
Sbjct: 136 VKNAFVEPRQIDMDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIID 195
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI FKP+EYW+++ K F A+ F +K+ + S+ + K +
Sbjct: 196 RENEIKAFKPEEYWSIDGFFKKGNK------KFQANFYGFDNKKT---KLKSNDDVKKVL 246
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I + +F V K K+ R P PY TS+LQQDAANK+NF TM +AQ+LYEG++L
Sbjct: 247 TRIKNDDFLVDKVEKKERKRNAPLPYTTSSLQQDAANKINFRTRKTMMVAQQLYEGIRLG 306
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA---QEA 706
GLITYMRTD IS A + + I E +G+ ++ K+ V+NA Q+A
Sbjct: 307 SNGQQGLITYMRTDSTRISPVAQNDAANYITEHFGAEYS------KHGNHVRNASGAQDA 360
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP+++ P ++ LD+D LKLY+LIW+R +A QM A ++V++ ++
Sbjct: 361 HEAIRPSNVNHTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTVKVNL--TQNGVL 418
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
F ++ S+++F G+ A Y D D + L + G+ + +Q
Sbjct: 419 FIANGSQIKFKGYMAVYNDSDKTKV----------------LPEMIKGETVKKISANPEQ 462
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARYSE SL+K LEE G+GRPSTYA TL+ +Q R YV + S+ P G +V++
Sbjct: 463 HFTQPPARYSEASLIKTLEENGVGRPSTYAPTLETIQKRYYVRLVSKRFEPTELGEIVNS 522
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ +F ++ D FTA+ME++LD V G EW+ ++ ++ F A+ Q+EK
Sbjct: 523 LIIEFFPDIVDVKFTAEMESKLDEVEVGKEEWQKVIDQFYKPFEKEVIKAE----EQMEK 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
+ K C VCG ++ K+ R+G F C+ P C+
Sbjct: 579 IQIKDEPAGF---------DCDVCGH-PMVIKLGRYGK--FYACSNFPDCH 617
>gi|398814429|ref|ZP_10573110.1| DNA topoisomerase I, bacterial [Brevibacillus sp. BC25]
gi|398036698|gb|EJL29907.1| DNA topoisomerase I, bacterial [Brevibacillus sp. BC25]
Length = 692
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 258/649 (39%), Positives = 366/649 (56%), Gaps = 50/649 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES TKAK I YLG Y V S GHVRDL V +F +
Sbjct: 4 TLVIVESPTKAKTIGKYLGSKYIVKASIGHVRDLPKSQMGVDVTHNFEPKYITIRGKGDV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A + + LA+DPDREGEAIAWH+ + L L N + RVVF+EIT+ +I
Sbjct: 64 LKGLKDAAKKVKKVYLAADPDREGEAIAWHLAQYL----GLDLNQPL-RVVFNEITKDAI 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS A+ LI DR
Sbjct: 119 KEAFKHPRHINMDLVNAQQARRILDRLVGYNISPILWKKVRKGLSAGRVQSVAVKLIMDR 178
Query: 531 EMEIDEFKPQEYWTVEAVL--DKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
E EI EF P+EYWT+ + L D KE ++ F ++ + S + +
Sbjct: 179 EREIQEFIPEEYWTIASTLISDGKEINA-----------KFYGYGDEKVELHSEDDVAAV 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ + + V K +KR R P+ITS+LQQ+AA KLNF + TM++AQ+LYEG+ +
Sbjct: 228 LKRMKNKPYVVQKVTKRERKRNPAPPFITSSLQQEAARKLNFRTSKTMRIAQELYEGIDV 287
Query: 649 PDGTAA-GLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ A GLITYMRTD +S A E R I E+YG ++ E PR K +NAQ+AH
Sbjct: 288 GNKEGAVGLITYMRTDSTRLSVTAQNEARDYILEKYGPNYVLSE-PRNQAKN-ENAQDAH 345
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT + R P + L D L+LY LIW R +A QM A + + VDI + F
Sbjct: 346 EAIRPTGVIRTPDEIKEYLSRDQLRLYRLIWERFLASQMSSAVLDTMSVDIDAG--GVTF 403
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S+V+F GF Y + N++ E+F L ++ G L E+E QH
Sbjct: 404 RATGSKVKFPGFMKVY---------IEGNDDGAEEESF--LPPIEEGQILEQKEIEPSQH 452
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP R+SE ++K +EE+GIGRPSTYA TL+ +Q R YV ++ + P G +V
Sbjct: 453 FTQPPPRFSEARMLKSMEEMGIGRPSTYAPTLETIQKRGYVALEEKRFVPTELGEIVITL 512
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ +F E+ + FTA ME+ LDN+ AG T W +L D++ F+ A+ + +VE
Sbjct: 513 VEEFFPEILNVEFTAHMESGLDNIEAGATNWVSVLDDFYQDFAKRVVVAEE-EMKEVELK 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+E++ D SC +CG +++K+ RFG F+ C+ P C
Sbjct: 572 VEES------------DESCELCG-SVMVYKLGRFGK--FLACSGFPDC 605
>gi|406586283|ref|ZP_11061216.1| DNA topoisomerase I [Streptococcus sp. GMD1S]
gi|419816827|ref|ZP_14341000.1| DNA topoisomerase I [Streptococcus sp. GMD4S]
gi|404466861|gb|EKA12155.1| DNA topoisomerase I [Streptococcus sp. GMD4S]
gi|404474232|gb|EKA18550.1| DNA topoisomerase I [Streptococcus sp. GMD1S]
Length = 695
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 367/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILD----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ + + ++ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGMNGKK---MKLTTNEEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F V + K+ R P PY TST+Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 HLTSKDFTVDQVDKKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASYINDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTGAIFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS A+S ++EK+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDTFYKPFSKEVAKAES----EMEKI 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
K C VCG ++ K+ RFG F C+ P C +
Sbjct: 572 QIKDEPAGF---------DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|406576579|ref|ZP_11052207.1| DNA topoisomerase I [Streptococcus sp. GMD6S]
gi|404461327|gb|EKA07300.1| DNA topoisomerase I [Streptococcus sp. GMD6S]
Length = 695
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 367/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILD----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ + + ++ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGMNGKK---MKLTTNEEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F V + K+ R P PY TST+Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 HLTSKDFTVDQVDKKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I ER+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASYINERFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAIFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS A++ ++EK+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDAFYKPFSKEVAKAEA----EMEKI 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
K C VCG ++ K+ RFG F C+ P C +
Sbjct: 572 QIKDEPAGF---------DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|138894732|ref|YP_001125185.1| DNA topoisomerase I [Geobacillus thermodenitrificans NG80-2]
gi|134266245|gb|ABO66440.1| DNA Topoisomerase I [Geobacillus thermodenitrificans NG80-2]
Length = 691
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 263/648 (40%), Positives = 361/648 (55%), Gaps = 46/648 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES TKAK I+ YLG Y V S GHVRDL V +D ++ + +
Sbjct: 5 LVIVESPTKAKTIERYLGKKYTVKASMGHVRDLPKSQMGVDINDGYTPKYITIRGKGQVI 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ ML +H + RVVFHEIT+ +IK
Sbjct: 65 KELKTAAKKAKKVFLAADPDREGEAIAWHLANMLDLD--IHSD---CRVVFHEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ Q R I+ NLV A ARR LD L+G+NISPLLW+K+ SAGRVQS AL LI DRE
Sbjct: 120 QSFQQPRSINMNLVDAQQARRVLDRLVGYNISPLLWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI +F+P+EYWT++A K + A F +L + + + K++ +
Sbjct: 180 KEIRQFQPEEYWTIQAKFQKGKE---------AFAASFYGVDGEKLELKTEADVKEVLAR 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+N F V +KR R P+ TS+LQQ+AA KLNF TM +AQ+LYEG+ L
Sbjct: 231 LNGRAFTVKTVTKRERRRSPVPPFTTSSLQQEAARKLNFRTKKTMMVAQQLYEGIDLGGE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD I++ A +E + I +G+ + +E ++ KK NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRIAETAQQEAAAYIEATFGAQYVHQEKRKE--KKSTNAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT R P + L D +LY LIW R +A QM A + + V++ N ++FR+S
Sbjct: 349 PTSAFRDPDKVKPYLTRDQFRLYKLIWERFIASQMAAAVLDTMSVELEN--NGVLFRASG 406
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+V+F GF Y E D + EE DR +L L+ G+ + +E KQH TQ
Sbjct: 407 SKVKFPGFMKVYIEGTD------DQTEEQDR-----LLPDLEEGEAVESEMIEPKQHFTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEELGIGRPSTYA TL +Q RNYV ++++ P G +V +
Sbjct: 456 PPPRYTEARLVKTLEELGIGRPSTYAPTLDTIQKRNYVVLENKRFVPTELGEIVVELILE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F E+ D FTA ME ELD + G EW ++ +++ F A+ + +VE E
Sbjct: 516 FFPEIIDVEFTAKMEKELDEIEEGKVEWIKVVDEFYREFEKRLKVAEK-EMREVEIKDEP 574
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
D C VCG +++K+ RFG FI C+ P C +
Sbjct: 575 AGID------------CDVCG-SPMVYKMGRFGK--FIACSNFPECRH 607
>gi|338534190|ref|YP_004667524.1| putative DNA protecting protein DprA/DNA topoisomerase I
[Myxococcus fulvus HW-1]
gi|337260286|gb|AEI66446.1| putative DNA protecting protein DprA/DNA topoisomerase I
[Myxococcus fulvus HW-1]
Length = 853
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 275/699 (39%), Positives = 379/699 (54%), Gaps = 58/699 (8%)
Query: 311 RKKKSAKATKASLQRQTSEEMVIVPRGQNTQNPLYPPSGKSVVVVESVTKAKVIQGYLGD 370
R KK + +++ EE PRG+ P Y +VVVES KAK I+ YLG
Sbjct: 47 RTKKGDEDALPTVEADAEEEAT--PRGKG---PHY------LVVVESPAKAKTIKKYLGS 95
Query: 371 MYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDP 430
Y V S GHV+DL V + DF + V L +K A+ + LA+DP
Sbjct: 96 GYTVKASVGHVKDLPKSKMGVDVEHDFQPEYTVIKGKEKVLNELKKMAKSADRVFLATDP 155
Query: 431 DREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLA 490
DREGEAIAWHI E L DAL RV F+EIT+ +I+ A+ R+++ + +
Sbjct: 156 DREGEAIAWHIKEELAHPDAL-------RVTFNEITKKAIQEAIAQPRQLNQDNYDSQQT 208
Query: 491 RRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLD 550
RR LD L+G+ ISPLLW+K+ SAGRVQS A+ LI +RE EI F P+EYWT++A+L+
Sbjct: 209 RRILDRLVGYQISPLLWKKVRRGLSAGRVQSVAVRLIVEREEEIKAFVPEEYWTLDALLE 268
Query: 551 KKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRK 610
F A L+ K++ +L + TE + ++ SA+F V K +R R
Sbjct: 269 GPSGPP----PFKAKLSKVDGKKV-ELKDRATTEG--LVAELQSASFSVAKVDRRERRRN 321
Query: 611 NPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDE 670
P P+ITS LQQ+AAN+L+F+A TM LAQ+LYEGV L D LITYMRTD +SD+
Sbjct: 322 APAPFITSKLQQEAANRLSFTAKKTMTLAQRLYEGVPLGDEGQTALITYMRTDSTRLSDD 381
Query: 671 AAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLD--- 727
A K++R I +YG P+E P Y K K+AQ+AHEAIRPT + P + G +
Sbjct: 382 AVKQVREFIDGKYGKDFLPDE-PMVYRSK-KSAQDAHEAIRPTSLEYPPERVKGFFEAMG 439
Query: 728 -EDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAY--- 783
ED +LY LIW+R +ACQM+PA Q DI A FR+S S ++F G+ A Y
Sbjct: 440 EEDMYRLYELIWNRFVACQMKPAVYDQTSADI--AAGRATFRASGSTLKFAGYLAVYGAG 497
Query: 784 ----EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGS 839
E+ + + +E + +A L L GD L L ++ +QH TQPP R+SE +
Sbjct: 498 LTPEEEAEKEKAKAAGDENAEGADAVGELPVLNDGDALNLQKLLHEQHFTQPPPRFSEAT 557
Query: 840 LVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYS 899
LVK+LEE GIGRPSTYA+ L +QD+ YV P G M + L +F D +
Sbjct: 558 LVKELEERGIGRPSTYAAILSTIQDKKYVEKLEGRFRPTDLGNMTNEMLVKHFPHELDVT 617
Query: 900 FTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFAS 959
FTA ME +LD +S G WK +L D++ F A++ + V++ KT
Sbjct: 618 FTATMEEKLDQISEGGANWKSVLHDFYGPFKETLEKAEA-EMRDVKREEIKT-------- 668
Query: 960 LPNKDRSCPVCGEGTLIFKVSRFG-AGYFIGCNQHPRCN 997
D C CG +I +FG G+F+ C+ +P C
Sbjct: 669 ----DIPCEKCGNLFVI----KFGKMGHFLACSNYPDCK 699
>gi|302380552|ref|ZP_07269017.1| DNA topoisomerase I [Finegoldia magna ACS-171-V-Col3]
gi|302311495|gb|EFK93511.1| DNA topoisomerase I [Finegoldia magna ACS-171-V-Col3]
Length = 688
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 265/685 (38%), Positives = 369/685 (53%), Gaps = 60/685 (8%)
Query: 348 SGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAA 407
+ K +VVVES TKAK IQ LG Y+V+ + GH+RDL + ++DF +
Sbjct: 2 ANKKLVVVESPTKAKTIQKMLGSGYKVVATIGHLRDLPKSKLGIDIENDFEPQYINVRGK 61
Query: 408 WTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITE 467
+ ++K + + LA+DPDREGEAI+WH+ +L + EN RV F EIT+
Sbjct: 62 ANVINALKKDYKNYQKIFLATDPDREGEAISWHLCYLLGI-NPKEEN----RVKFQEITK 116
Query: 468 ASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLI 527
S+K A++ ID LV A ARR LD ++G++ISPLLW+K+ SAGRVQS AL LI
Sbjct: 117 DSVKEAIKKPEAIDLKLVDAQQARRVLDRIVGYSISPLLWKKVKSGLSAGRVQSVALRLI 176
Query: 528 CDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 587
C+RE EI EF+P+EYW++ A L K D F + L + +S + N+++I + EA
Sbjct: 177 CEREKEIREFEPEEYWSIHANLSK------DKLDFDSELYYSKSDKSNKINIKNKDEADK 230
Query: 588 IEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
I + S F V ++ RK P+ TSTLQQ+A KL F + TM++AQ+LYEG+
Sbjct: 231 ILNDL-SDKFVVDSIKQQKKARKPYAPFTTSTLQQEAYKKLYFQTSKTMRIAQQLYEGIS 289
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
L + GLITYMRTD IS + +I E YG +A Y KK K +Q+AH
Sbjct: 290 LGSEGSVGLITYMRTDSTRISQVCVNDCLDIINELYGKQYATR--GYDYSKKKKGSQDAH 347
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
E IRP+ ++R P + L ED KLY LIW RT+A QM+ A +D N F
Sbjct: 348 EGIRPSSVKRRPNEIKKYLTEDQYKLYKLIWERTVASQMKDARYLSTSIDFDN--NGYTF 405
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
RS+ + V F GF Y ++ K++E L LK +P+ E+E KQH
Sbjct: 406 RSNGNVVIFDGFTRVY------SLNTKDSE----------LPELKDREPISSNEIEPKQH 449
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
T+P RY+E SLVK LEE GIGRPSTYAS + + RNYV +K + Y G V F
Sbjct: 450 FTKPKPRYTEASLVKTLEEDGIGRPSTYASIISSILSRNYVELKEKKFYTTEIGEKVCEF 509
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF + + FTA+ME ELDN++ EWK ++ D+++ F+ A+ + K+
Sbjct: 510 VVKYFDSIINEKFTAEMENELDNIAENDVEWKKVIRDFYNGFNEDLVNAK--NAQDKFKV 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD 1007
++ G R CP CG L+ K R G FIGC+ P C Y
Sbjct: 568 KDEPIG-----------RKCPECG-NDLVIKHGRNGK--FIGCSAFPECKYT-------- 605
Query: 1008 DEEDTLQRNTNVDEPKLIGHHPASK 1032
+T+ ++T V PK GH K
Sbjct: 606 ---ETIVKDTKVKCPKC-GHRIIEK 626
>gi|428279206|ref|YP_005560941.1| DNA topoisomerase I [Bacillus subtilis subsp. natto BEST195]
gi|291484163|dbj|BAI85238.1| DNA topoisomerase I [Bacillus subtilis subsp. natto BEST195]
Length = 691
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 265/677 (39%), Positives = 371/677 (54%), Gaps = 58/677 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L L N + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLD----LDLN-SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++FKP+EYWT++ K + +TF F K +L + S + K+I +
Sbjct: 180 KEINDFKPEEYWTIDGTFLKGQ----ETFE-----ASFFGKNGKKLPLNSEADVKEILSQ 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LKGNQYTVEKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGRE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A E + I + YG G RK KK +NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISNTAVDEAAAFIDQTYGKEFLG--GKRKPAKKNENAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R P+ L +L D ++LY LIW R +A QM A + + VD+ N + FR++
Sbjct: 349 PTSVLRKPSELKAVLGRDQMRLYKLIWERFVASQMASAVLDTMSVDLTN--NGLTFRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y + + EE DR +L L+ GD + ++E +QH TQP
Sbjct: 407 SKVKFSGFMKVYVEGKDDQM-----EEKDR-----MLPDLQEGDTVLSKDIEPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEE GIGRPSTYA TL +Q R YV + ++ P G++V + +
Sbjct: 457 PPRYTEARLVKTLEERGIGRPSTYAPTLDTIQRRGYVALDNKRFVPTELGQIVLDLIMEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LD+V G TEW ++ ++++ F A+S + +VE E
Sbjct: 517 FPEIINVEFTAKMERDLDHVEEGNTEWVKIIDNFYTDFEKRVKKAES-EMKEVEIEPEYA 575
Query: 952 FGDSLFASLPNKDR----------------------------SCPVCGEGTLIFKVSRFG 983
D S P + CP CGEG ++ + S+
Sbjct: 576 GEDCELCSSPMVYKMGRYGKFLACSNFPDCRNTKPIVKQIGVKCPSCGEGNIVERKSK-K 634
Query: 984 AGYFIGCNQHPRCNYIA 1000
F GC+++P C +++
Sbjct: 635 KRVFYGCDRYPDCEFVS 651
>gi|270292615|ref|ZP_06198826.1| DNA topoisomerase [Streptococcus sp. M143]
gi|270278594|gb|EFA24440.1| DNA topoisomerase [Streptococcus sp. M143]
Length = 695
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 367/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ + + ++ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGMNGKK---MKLTTNEEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F V + K+ R P PY TST+Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 HLTSKDFTVDQVDKKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASYINDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTGAIFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS A+S ++EK+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDAFYKPFSKEVAKAES----EMEKI 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
K C VCG ++ K+ RFG F C+ P C +
Sbjct: 572 QIKDEPAGF---------DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|401680076|ref|ZP_10812000.1| DNA topoisomerase I [Veillonella sp. ACP1]
gi|400219203|gb|EJO50074.1| DNA topoisomerase I [Veillonella sp. ACP1]
Length = 772
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/686 (37%), Positives = 373/686 (54%), Gaps = 67/686 (9%)
Query: 344 LYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEV 403
+Y P GK +V+VES K+K I+ +LG Y V S GH+RDL + D +F+ +
Sbjct: 60 VYNPDGKILVIVESPAKSKTIEKFLGPNYIVKASMGHLRDLPKSQMGIDIDHNFTPRYSN 119
Query: 404 PSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV---ARV 460
A + + + ++LA+DPDREGEAI+WH+ +L N+ + R+
Sbjct: 120 LVARKKVIDDLVAHADESSAVLLATDPDREGEAISWHLAYIL--------NVDITSNCRI 171
Query: 461 VFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQ 520
F+EIT+ ++ AL+ R +D N+V A ARR LD ++G+ +SPLLW+K+ SAGRVQ
Sbjct: 172 TFNEITKTAVAEALEHPRTVDMNMVDAQQARRVLDRIVGYKLSPLLWKKVCKGLSAGRVQ 231
Query: 521 SAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIG 580
S A+ LIC+RE EI F PQEYW++E K + F A LTH + +L+ I
Sbjct: 232 SVAVRLICEREREIQAFVPQEYWSIEGQFKTKTNEE-----FAAELTHVKGDKLD---IT 283
Query: 581 SHTEAKDIEQKI--NSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKL 638
+A I++ I ++A +K SKRS RK P+ TSTLQQD KLNF A TM +
Sbjct: 284 CEADAVAIQKAIADHTATVTSVKKSKRS--RKPAPPFTTSTLQQDGVRKLNFGAKRTMMI 341
Query: 639 AQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFK 698
AQ LYEG+++ GLITYMRTD IS + ++ R I YG + P + P Y K
Sbjct: 342 AQHLYEGLEIGSYGHVGLITYMRTDSTRISKDMQEQARVYIKRTYGDDYCPAK-PNVYGK 400
Query: 699 KVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI 758
K ++AQ+AHEAIRPT + P M+ ++ D LKLY+LIW+R MA QM +D+
Sbjct: 401 K-ESAQDAHEAIRPTSLELTPKMVEPFVNRDELKLYTLIWNRFMASQMASQQNESTTIDL 459
Query: 759 GNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLY 818
+ D++ F+++ SRV F GF A YED + E L +LK D +
Sbjct: 460 -DIDDTYTFKATGSRVLFPGFSAVYED--------------SKKEDTPQLPALKKSDVVE 504
Query: 819 LGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPE 878
++ +QH TQPPARYSE SL+K LEELGIGRPSTYA + + RNYV ++ P
Sbjct: 505 TVLIDPEQHFTQPPARYSEASLIKTLEELGIGRPSTYAPIIDTIVSRNYVETNNKQFIPT 564
Query: 879 FRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQS 938
G +V FL YF ++ + FTA++E ELD ++ G + +L D+++ F A
Sbjct: 565 ELGFVVVDFLVAYFEKIINTGFTAELEEELDAIANGKDTYVKVLTDFYNIFKQELDDASD 624
Query: 939 LHIHQVEKM------------LEKTFGD-------SLFASLPNKD-------RSCPVCGE 972
+ Q+ M + FG S F N +CP CGE
Sbjct: 625 VDKIQIASMESDETCELCGHPMVYKFGRYGKFLACSNFPECKNTKPITVGTGVACPKCGE 684
Query: 973 GTLIFKVSRFGAGYFIGCNQHPRCNY 998
G ++ + S+ G F GCN++P+C++
Sbjct: 685 GEIVERKSKRGR-IFYGCNRYPQCDF 709
>gi|227499920|ref|ZP_03930013.1| DNA topoisomerase [Anaerococcus tetradius ATCC 35098]
gi|227218029|gb|EEI83302.1| DNA topoisomerase [Anaerococcus tetradius ATCC 35098]
Length = 684
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 266/680 (39%), Positives = 370/680 (54%), Gaps = 69/680 (10%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES TKAK I LG Y+V+ + GH+RDL V ++DF +
Sbjct: 2 AKNLVIVESPTKAKSIAKMLGRNYKVMATIGHLRDLPKSKFGVDIENDFEPEYIKVRGRA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+ +K AE + LA+DPDREGEAI+WH+ + L D +N RV FHEIT+
Sbjct: 62 KTINELKKEADKAEKVYLATDPDREGEAISWHL-QFLLGLDPHAKN----RVEFHEITKE 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+IK A++ REID NLV A ARR +D ++G+ ISP+LW+++ SAGRVQS AL LI
Sbjct: 117 NIKNAIRNPREIDQNLVDAQQARRVMDRIVGYEISPILWKRIKSGLSAGRVQSVALKLIV 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DR+ EID+F P+EYWT+ A H D F + F + ++ I + A +
Sbjct: 177 DRQKEIDDFIPEEYWTITA------HHKHDKLKFD---SEFYGQINKKVKISKESGADKV 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
KI+ NF+V+K +K RK PY TSTLQQDA+N+L FS +TM+LAQ+L+EG+ +
Sbjct: 228 LSKIDKDNFKVVKITKTKKSRKPQKPYTTSTLQQDASNRLGFSTKFTMQLAQQLFEGIDV 287
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
DG+ GLITYMRTD IS E E S I E+YG +A Y + K +Q+AHE
Sbjct: 288 GDGSV-GLITYMRTDANRISKEIVGEALSYIKEKYGPEYASRGNT--YEGRKKGSQDAHE 344
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT IRR P + L + KLY +IW R +A QM QV N S++F+
Sbjct: 345 AIRPTSIRRNPLEIKQYLTDQQYKLYKMIWERVVASQMTDYEYLSTQVLFDN--NSLIFK 402
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ F GF N+ + +E IL LK GD + +++ QH
Sbjct: 403 TNGKITLFEGF----------------NKLSSANENENILPELKEGDVIGAEKIDKDQHF 446
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T PPARY+E SLVK LEE GIGRPSTY++T+ + RNYV + R +YP G+ V+ FL
Sbjct: 447 TNPPARYTEASLVKTLEEFGIGRPSTYSATINQIISRNYVEFEGRSIYPTDLGKTVNTFL 506
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF------------------- 929
F ++ + FTA+ME LDN++ G WK L ++ F
Sbjct: 507 QENFDDIINVEFTAEMENALDNIAEGERFWKETLKAFYKDFEKDMRGVKKDENDYKVKDE 566
Query: 930 --SSYC-TCAQSLHIHQVE--KMLEKT------FGDSLFASLPNKDRSCPVCGEGTLIFK 978
C C ++L I K + T F S+ S K CP C +GTLI K
Sbjct: 567 VLDEKCPKCGKNLAIKHGRNGKFIGCTGFPACDFTKSIIKSTGVK---CPNCKDGTLIEK 623
Query: 979 VSRFGAGYFIGCNQHPRCNY 998
VS+ G ++ GC+ +P+C++
Sbjct: 624 VSKRGKRFY-GCDNYPKCDF 642
>gi|358465058|ref|ZP_09175015.1| DNA topoisomerase I [Streptococcus sp. oral taxon 058 str. F0407]
gi|357066132|gb|EHI76290.1| DNA topoisomerase I [Streptococcus sp. oral taxon 058 str. F0407]
Length = 695
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/651 (38%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ + + ++ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGMNGKK---MKLTTNEEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F V + K+ R P PY TST+Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 HLTSKDFTVDQVDKKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASYINDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTGAIFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ +++ FS A++ ++EK+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDEFYKPFSKEVAKAEA----EMEKI 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
K C VCG ++ K+ RFG F C+ P C +
Sbjct: 572 QIKDEPAGF---------DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|401683657|ref|ZP_10815543.1| DNA topoisomerase I [Streptococcus sp. BS35b]
gi|400187735|gb|EJO21929.1| DNA topoisomerase I [Streptococcus sp. BS35b]
Length = 695
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/651 (38%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILD----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ + + ++ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGMNGKK---MKLTTNEEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F V + K+ R P PY TST+Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 HLTSKDFTVDQVDKKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASYINDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTGAIFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ +++ FS A++ ++EK+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDEFYKPFSKEVAKAEA----EMEKI 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
K C VCG ++ K+ RFG F C+ P C +
Sbjct: 572 QIKDEPAGF---------DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|28210945|ref|NP_781889.1| DNA topoisomerase I [Clostridium tetani E88]
gi|28203384|gb|AAO35826.1| DNA topoisomerase I [Clostridium tetani E88]
Length = 696
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 264/683 (38%), Positives = 373/683 (54%), Gaps = 67/683 (9%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +++VES KAK I YL Y V S GH+RDL V D+++ +
Sbjct: 4 GQKLIIVESPAKAKTIGKYLDKTYHVEASMGHIRDLPKSQLGVDIDNNYEPKYITIRGKG 63
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L IK + + LA+DPDREGEAI+WH+ + L+ +D R+VF+EIT++
Sbjct: 64 ELLTKIKKHAKKCDEIYLATDPDREGEAISWHLSQALKLEDNKK-----CRIVFNEITKS 118
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K A++ REID +LV A ARR LD L+G+ ISP+LWRK+ SAGRVQS L +IC
Sbjct: 119 AVKNAIKEPREIDIDLVNAQQARRVLDRLVGYKISPILWRKVRWGLSAGRVQSVVLKMIC 178
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI+EF P+EYWT+E L+K D F L SK ++ I + E+ +I
Sbjct: 179 DREKEIEEFIPKEYWTIECKLNK------DRKDF---LVKLISKDNKKIEINTEEESNNI 229
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ F V K K + + P+ITSTLQQDA KLNFS TM +AQ+LYEG+ +
Sbjct: 230 IKELKQGQFTVDKIKKTNKNKNPLPPFITSTLQQDAYRKLNFSTKKTMSVAQQLYEGIDI 289
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
GLITYMRTD + IS EA + R + YG + PE+ PR Y K KN Q+AHE
Sbjct: 290 KGHGTVGLITYMRTDSVRISKEAQNKARQFLENVYGKEYIPEK-PRDY-KGKKNIQDAHE 347
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT+I P + L+ D KLYSLIW+R MA QM + VD+ N++ +FR
Sbjct: 348 AIRPTNIEITPKIALENLNSDQYKLYSLIWNRFMASQMAACVMEVNSVDVKNSE--YIFR 405
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S V+F GF YE ++ D E I L+ G+ L ++ KQH
Sbjct: 406 ATGSIVKFDGFMIIYEYLN-----------EDEKENINI-PKLEKGELLKEKSIDSKQHF 453
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP R+SE SLVK LE+ GIGRPSTYA + L +R Y+ ++R L G +V+ +
Sbjct: 454 TQPPGRFSEASLVKVLEDNGIGRPSTYAPIISTLLERTYIERENRTLKSTELGVIVNNIM 513
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM- 947
YF V D FTA+ME +LD++ G WK + +++S A+ +VEK+
Sbjct: 514 VEYFKPVVDAEFTAEMENKLDSIEEGNENWKNTVDEFYSPLKELIETAEK----EVEKVT 569
Query: 948 LEKT-------------------FGDSL----FASLPNK-------DRSCPVCGEGTLIF 977
LE+ FGD L + N D CP C G ++
Sbjct: 570 LEEKVTDVKCEKCGNNMVVKHGRFGDFLACPGYPECKNTKPIVHQLDVKCPKC-HGEIVL 628
Query: 978 KVSRFGAGYFIGCNQHPRCNYIA 1000
K S+ G ++ GC+ +P+C++++
Sbjct: 629 KKSKKGRKFY-GCSNYPKCDFVS 650
>gi|357050882|ref|ZP_09112078.1| DNA topoisomerase 1 [Enterococcus saccharolyticus 30_1]
gi|355380507|gb|EHG27643.1| DNA topoisomerase 1 [Enterococcus saccharolyticus 30_1]
Length = 700
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 255/648 (39%), Positives = 367/648 (56%), Gaps = 46/648 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK I+ YLG Y+V+ S GH+RDL + ++D+ +
Sbjct: 12 KYLVIVESPAKAKTIEKYLGRNYKVVASVGHIRDLPKSKMGIDVENDYEPHYISIRGKGD 71
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+KS++ A AE + LASDPDREGEAIAWH+ +L D +N RVVF+EIT+ +
Sbjct: 72 VIKSLRSAAKKAEKVYLASDPDREGEAIAWHLAFLLGL-DLKEKN----RVVFNEITKDA 126
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A + R ID +LV A ARR LD L+G++ISP+LWRK+ SAGRVQS AL +I D
Sbjct: 127 VKAAFKEPRTIDVDLVDAQQARRVLDRLVGYSISPILWRKVKKGLSAGRVQSVALKIIID 186
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI EF P+EYW+++ + + + L + K N SI K++
Sbjct: 187 REKEIREFIPEEYWSIDG---NFKKATKKFKAAFWGLDGKKKKLPNAESI------KEVT 237
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
++++ ++QV K K+ R P+ TS+LQQ+AA KLNF TM +AQ+LYEG+ L
Sbjct: 238 ERLDGKDYQVTKVEKKERKRNPSAPFTTSSLQQEAARKLNFRTRKTMMVAQQLYEGIPLG 297
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E I YGS + G K K + AQ+AHEA
Sbjct: 298 KQGTVGLITYMRTDSTRIADTAKGEAAEFIETTYGSAFSAHGG--KKIKNAQGAQDAHEA 355
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
+RPT + R P + LD+D LKLY LIWSR +A QM PA + ++V + ++F +
Sbjct: 356 VRPTSVMRTPEEMEKYLDKDQLKLYRLIWSRFVASQMTPAILDTMKVTL--QQNGVIFIA 413
Query: 770 SCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ S+++F GF Y E D G KE++EN IL L GD + +E KQH
Sbjct: 414 NGSKIKFKGFMQVYVEGRDDG----KEDKEN-------ILPELNEGDVVQSISIEPKQHF 462
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPPAR+SE +L+K LEE G+GRPSTYA TL+ +Q R YV + + P G +V++ +
Sbjct: 463 TQPPARFSEATLIKTLEENGVGRPSTYAPTLETIQRRYYVKLTQKRFEPTELGEIVNSLI 522
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F ++ D FTA+ME+ LD++ AG EW ++ ++ F + A+ +I +++
Sbjct: 523 EEFFPQIVDTHFTAEMESSLDSIEAGKQEWIKVVDQFYRPFEKELSNAEE-NIEKIQIKD 581
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E D C +CG ++ K+ R+G F C+ P C
Sbjct: 582 EPAGFD------------CDICGH-PMVIKLGRYGK--FYACSNFPDC 614
>gi|385261318|ref|ZP_10039446.1| DNA topoisomerase I [Streptococcus sp. SK140]
gi|385188690|gb|EIF36167.1| DNA topoisomerase I [Streptococcus sp. SK140]
Length = 695
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 251/651 (38%), Positives = 367/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDVENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ + + ++ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGMNGKK---MKLATNEEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F+V + K+ R P PY TST+Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 HLTSKDFRVDQVDKKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGINIGT 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E + I ER+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAANYINERFGSKYS------KHGSKVKNATGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPEKIAKYLDKDQLKLYTLIWNRFVASQMTGAIFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ +++ FS + + E+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDEFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C CG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEECG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|449958429|ref|ZP_21809752.1| DNA topoisomerase I [Streptococcus mutans 4VF1]
gi|450140214|ref|ZP_21872844.1| DNA topoisomerase I [Streptococcus mutans NLML1]
gi|449170031|gb|EMB72772.1| DNA topoisomerase I [Streptococcus mutans 4VF1]
gi|449232104|gb|EMC31240.1| DNA topoisomerase I [Streptococcus mutans NLML1]
Length = 705
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 248/651 (38%), Positives = 366/651 (56%), Gaps = 57/651 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D+++ +
Sbjct: 21 KNLVIVESPAKAKTIEKYLGRSYKVVASVGHIRDLKKSSMSIDFDNNYEPQYINIRGKGP 80
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ S+K A+ + LASDPDREGEAI+WH+ +L D +N RVVF+EIT+ +
Sbjct: 81 LINSLKKEAKNAKQIFLASDPDREGEAISWHLAHILDL-DLKGKN----RVVFNEITKDA 135
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A R+ID +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI D
Sbjct: 136 VKNAFVEPRQIDMDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIID 195
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI FKP+EYW+++ K F A+ +K+ + S+ + K +
Sbjct: 196 RENEIKAFKPEEYWSIDGFFKKGNK------KFQANFYGLDNKKT---KLKSNDDVKKVL 246
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I + +F V K K+ R P PY TS+LQQDAANK+NF TM +AQ+LYEG++L
Sbjct: 247 TRIKNDDFLVDKVEKKERKRNAPLPYTTSSLQQDAANKINFRTRKTMMVAQQLYEGIRLG 306
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA---QEA 706
GLITYMRTD IS A + + I E +G+ ++ K+ V+NA Q+A
Sbjct: 307 SNGQQGLITYMRTDSTRISPVAQNDAANYITEHFGAEYS------KHGNHVRNASGAQDA 360
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP+++ P ++ LD+D LKLY+LIW+R +A QM A ++V++ ++
Sbjct: 361 HEAIRPSNVNHTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTVKVNL--TQNGVL 418
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
F ++ S+++F G+ A Y D D + L + G+ + +Q
Sbjct: 419 FIANGSQIKFKGYMAVYNDSDKTKV----------------LPEMIKGETVKKISANPEQ 462
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARYSE SL+K LEE G+GRPSTYA TL+ +Q R YV + S+ P G +V++
Sbjct: 463 HFTQPPARYSEASLIKTLEENGVGRPSTYAPTLETIQKRYYVRLVSKRFEPTELGEIVNS 522
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ +F ++ D FTA+MET+LD V G EW+ ++ ++ F A+ Q+EK
Sbjct: 523 LIIEFFPDIVDVKFTAEMETKLDEVEVGKEEWQKVIDQFYKPFEKEVVKAE----EQMEK 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
+ K C VCG ++ K+ R+G F C+ P C+
Sbjct: 579 IQIKDEPAGF---------DCDVCGH-PMVIKLGRYGK--FYACSNFPDCH 617
>gi|295706294|ref|YP_003599369.1| DNA topoisomerase I [Bacillus megaterium DSM 319]
gi|294803953|gb|ADF41019.1| DNA topoisomerase I [Bacillus megaterium DSM 319]
Length = 691
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 256/645 (39%), Positives = 356/645 (55%), Gaps = 44/645 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL + + D++ + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGIDIEQDYNPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L A + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKIYLAADPDREGEAIAWHLAHSLDVDIA-----SDCRVVFNEITKEAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+NISPLLW+K+ SAGRVQS A+ LI DRE
Sbjct: 120 ESFKHPRAINMDLVDAQQARRILDRLVGYNISPLLWKKVKKGLSAGRVQSIAVRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI +F P+EYWTV+A K F L +Q K++ + + + +I ++
Sbjct: 180 KEIAKFIPEEYWTVKATFQKGNDQ------FEGQLIEYQGKKV---ELSNENDVTNIVKQ 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
++ F + K +KR R + TS+LQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LDGNEFSISKVTKRERKRNAAPSFTTSSLQQEAARKLNFRAKKTMMIAQQLYEGIDLGKE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A E R I YG+ E ++ KK NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISETAQTEARDYITNAYGNQFVATEKRKE--KKNSNAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT R P + L D +LY L+W R +A QM PA + + VD+ N D I FR++
Sbjct: 349 PTSALRKPGEVKEFLSRDQYRLYKLVWERFVASQMAPAIMDTMAVDLKNGD--ITFRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y + + + KEN +L L+ G+ Y +++ KQH TQP
Sbjct: 407 SKVKFPGFMKVYVEGNDDQVEEKEN----------LLPDLEEGEVAYSKDIDEKQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G +V + +
Sbjct: 457 PPRYTEARLVKTLEELGIGRPSTYAPTLDTIQKRGYVALDNKRFVPTELGEIVLELVLEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ D FTA ME +LD V G +W ++ +++S F A+ + +VE E
Sbjct: 517 FPEILDVEFTAKMENDLDEVEDGNVQWVRVIDEFYSDFEKRLEHAEK-EMREVEIKDEPA 575
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C CG +++K+ R+G F+ C+ P C
Sbjct: 576 GED------------CEECG-SPMVYKMGRYGK--FMACSNFPDC 605
>gi|417917228|ref|ZP_12560790.1| DNA topoisomerase I [Streptococcus parasanguinis SK236]
gi|342830877|gb|EGU65202.1| DNA topoisomerase I [Streptococcus parasanguinis SK236]
Length = 695
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 247/652 (37%), Positives = 369/652 (56%), Gaps = 58/652 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I+ YLG Y+V+ S GH+RDL + S+ D+++ +
Sbjct: 14 KNLVIVESPAKAKTIEKYLGRNYKVMASVGHIRDLKKSTMSIDFDNNYEPEYINIRGKGP 73
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ +K A+ + LASDPDREGEAI+WH+ +L DA +N RVVF+EIT+ +
Sbjct: 74 LINDLKKEAKKAKQVFLASDPDREGEAISWHLAHILNL-DAKEKN----RVVFNEITKDA 128
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A + R+ID +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI D
Sbjct: 129 VKNAFKEPRQIDMDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIID 188
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI++FKP+EYWT++ V K T F A K+ + + ++ E K +
Sbjct: 189 RENEINDFKPEEYWTIDGVFKK------GTKQFQASFYGIDGKK---MKLNTNEEVKAVL 239
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+++ +F V K K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 240 ERLEGKDFTVEKVEKKERRRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIG 299
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEA 706
G GLITYMRTD IS A E + I +R+G ++ K+ +VKN AQ+A
Sbjct: 300 SGV-QGLITYMRTDSTRISPVAQNEAANFIVDRFGEKYS------KHGSRVKNASGAQDA 352
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V +G +
Sbjct: 353 HEAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAIFDTMNVRLGQ--NGVQ 410
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
+ ++ S+V+F G+ A Y D D +L + GD + + +Q
Sbjct: 411 YTANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVEGDIVKQVNSKPEQ 454
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 455 HFTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVKLVAKRFEPTELGEIVNK 514
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ +F ++ + +FTA+ME +LD+V G EW+ ++ ++ FS + + E+
Sbjct: 515 LIVEFFPDIVNVTFTAEMEGKLDDVELGKEEWQKVIDAFYKPFSK--------EVAKAEE 566
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 567 EMEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|337750060|ref|YP_004644222.1| TopA protein [Paenibacillus mucilaginosus KNP414]
gi|336301249|gb|AEI44352.1| TopA [Paenibacillus mucilaginosus KNP414]
Length = 700
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 263/679 (38%), Positives = 370/679 (54%), Gaps = 56/679 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES KAK I YLG Y V S GH+RDL V +F + +
Sbjct: 4 SLVIVESPAKAKTISKYLGSKYIVKASMGHIRDLPKSQIGVEVKKNFEPKYITIRGKGSV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A + + LA+DPDREGEAIAWH+ L+ D RVVF+EIT+ ++
Sbjct: 64 LKELKDASKRVKKVYLAADPDREGEAIAWHLAHYLELSDQ-----DACRVVFNEITKQAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+I+ +LV A ARR LD L+G+ ISPLLW+K+ SAGRVQS A+ LI DR
Sbjct: 119 KDAFKTPRKINQDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKLIYDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F+P+EYWT+ A L +S F A F S + + S +E ++
Sbjct: 179 ENEIKAFEPEEYWTITAKLAANKS------DFEAK---FYSVNGEKKELKSQSEVNEVLA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ ++F V + ++ +R P+ITS+LQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 LLGGSDFVVSEVKEKERLRNPSPPFITSSLQQEAARKLNFRAAKTMSVAQQLYEGIDLGS 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A +E + I +YG + P E PR Y KK NAQ+AHEAI
Sbjct: 290 EGTVGLITYMRTDSTRISPVAQEEAKEYITGKYGEAYYPAE-PRNYVKKNANAQDAHEAI 348
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ + R P + L D +LY L+W R +A QM A + + VD+ +VFR+
Sbjct: 349 RPSSVLREPESIKAHLSRDQFRLYKLVWERFVASQMASAVLDTMTVDLNAG--PVVFRAV 406
Query: 771 CSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S+++F GF Y E D GA ++++ L LK GD ++ KQH T
Sbjct: 407 GSKIKFHGFMKVYVESSDEGAADAADDDK--------FLPPLKQGDEAKPQAIDPKQHFT 458
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LVK LEE+GIGRPSTYA TL+ +Q R YV ++ + P G +V +
Sbjct: 459 QPPPRYTEARLVKALEEMGIGRPSTYAPTLETIQKRGYVAIEEKKFVPTELGELVIQQMI 518
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE---- 945
+F E+ D FTA ME LD++ G +W +L +++ F A+ + ++E
Sbjct: 519 EFFPEILDVEFTAHMEEGLDHIEEGKEDWVRVLSEFYDSFEKRLEVAEE-EMEKIEIQDE 577
Query: 946 ---KMLEKT----------FGDSLFAS-LPN--------KDR--SCPVCGEGTLIFKVSR 981
++ EK FG L S P+ KD +CP C EG +I + S+
Sbjct: 578 VSDEICEKCGNHFVYKMGRFGKFLACSGFPDCRNTKPIVKDTGVTCPSCHEGKIIERRSK 637
Query: 982 FGAGYFIGCNQHPRCNYIA 1000
G F GC+++P C +++
Sbjct: 638 KGR-IFYGCDRYPACEFVS 655
>gi|417794227|ref|ZP_12441486.1| DNA topoisomerase I [Streptococcus oralis SK255]
gi|334270465|gb|EGL88869.1| DNA topoisomerase I [Streptococcus oralis SK255]
Length = 695
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/651 (38%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILD----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ + + ++ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGMNGKK---MKLTTNEEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F V + K+ R P PY TST+Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 HLTSKDFTVDQVDKKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASYINDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTGAIFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ +++ FS A++ ++EK+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDEFYKPFSKEVAKAEA----EMEKI 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
K C VCG ++ K+ RFG F C+ P C +
Sbjct: 572 QIKDEPAGF---------DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|352517742|ref|YP_004887059.1| DNA topoisomerase I [Tetragenococcus halophilus NBRC 12172]
gi|348601849|dbj|BAK94895.1| DNA topoisomerase I [Tetragenococcus halophilus NBRC 12172]
Length = 692
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 251/648 (38%), Positives = 358/648 (55%), Gaps = 46/648 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK I+ YLG Y+V+ S GHVRDL + ++++ +
Sbjct: 4 KYLVIVESPAKAKTIEKYLGRNYKVVASVGHVRDLPKSKMGIDVENNYEPYYITIRGKGD 63
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+K +K AE + LASDPDREGEAIAWH+ +L D +N RVVF+EIT+ +
Sbjct: 64 VIKDLKKHAKKAERVYLASDPDREGEAIAWHLSYILGL-DPHDKN----RVVFNEITKDA 118
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A + R ID +L+ A ARR LD L+G++ISP+LWRK+ SAGRVQS AL +I D
Sbjct: 119 VKEAFKEPRTIDLDLIDAQQARRVLDRLVGYSISPILWRKVKKGLSAGRVQSVALKMIID 178
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI F P+EYW+++ K F A+ K+ + + K++
Sbjct: 179 REKEIRNFTPEEYWSIDGNFKKGRK------KFKANFWGLDGKKK---KLPNEDAVKEVT 229
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
Q+I+ ++ V K K+ R P+ TS++QQ+AA KLNF TM +AQ+LYEG+ L
Sbjct: 230 QRISGKDYNVTKVEKKERKRNPAAPFTTSSMQQEAARKLNFRTGKTMMVAQQLYEGISLG 289
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
G GLITYMRTD ISD A +E I + YG ++A K K + AQ+AHEA
Sbjct: 290 KGGTTGLITYMRTDSKRISDTAKQEATDFIEQTYGKNYAAHSN--KKLKNAQGAQDAHEA 347
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R P + LD+D LKLY LIWSR +A QM+PA + ++ + ++F +
Sbjct: 348 IRPTSAMRSPEEIGKYLDKDQLKLYRLIWSRLIASQMKPAILDTVKATLDQ--NGVIFVA 405
Query: 770 SCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ S+V+F GF Y E D G K+++EN +L L +GD + ++ QH
Sbjct: 406 NGSKVKFKGFMEVYVEGRDDG----KKDKEN-------VLPELASGDIVQSEDITPNQHF 454
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPPAR+SE +L++ LEE G+GRPSTYA TL+ +Q R YV + + P G +V +
Sbjct: 455 TQPPARFSEATLIRTLEENGVGRPSTYAPTLQTIQKRYYVKLTQKRFEPTELGEIVDNLI 514
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F E+ D SFTA ME +LD++ G EW ++ ++ F A+ EKM
Sbjct: 515 EDFFPEIVDASFTAGMEEDLDHIEEGKEEWVKVIDRFYQPFEKELETAE-------EKME 567
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ D C VCG ++ K+ R+G F C+ P C
Sbjct: 568 KIEIKDEPAGF------DCDVCGH-PMVIKLGRYGK--FYACSNFPEC 606
>gi|427740183|ref|YP_007059727.1| DNA topoisomerase I [Rivularia sp. PCC 7116]
gi|427375224|gb|AFY59180.1| DNA topoisomerase I, bacterial [Rivularia sp. PCC 7116]
Length = 895
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 293/841 (34%), Positives = 427/841 (50%), Gaps = 83/841 (9%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDL--------AARSGS------VRPDDD 396
++V+VES TKAK I+ YL Y V S GHVRDL AA G V + +
Sbjct: 3 TLVIVESPTKAKTIRNYLPSDYRVEASMGHVRDLPQSASEIPAAVKGEEWAKLGVNVESN 62
Query: 397 FSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENIT 456
F ++ VP + +K AL A LILA+D DREGE+I+WH+ ++L+ + +
Sbjct: 63 FEPLYVVPKTKKQVVSQLKQALKEASELILATDEDREGESISWHLYQLLKPK------VP 116
Query: 457 VARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSA 516
R+VFHEIT +IK AL+ R +D LV+A RR LD L+G+ +SPLLW+K+ SA
Sbjct: 117 TKRMVFHEITSEAIKKALKNTRTVDEQLVRAQETRRILDRLVGYTLSPLLWKKIAWGLSA 176
Query: 517 GRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRL-- 574
GRVQS A+ L+ RE E F YW ++AVL + + SF + L +L
Sbjct: 177 GRVQSVAVRLLVQRERERRAFNQGSYWDLKAVLSQTANKGSKEQSFNSVLVSLAGTKLAT 236
Query: 575 --------------NQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTL 620
++ + + EA+ ++ +I ++V +R + RK P+ TSTL
Sbjct: 237 GSDFDPATGKIAAGRKVVLLNEEEAEALKARITDKTWKVTNLDERPVTRKPAPPFTTSTL 296
Query: 621 QQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIF 680
QQ++ KL SA TM++AQ LYE G ITYMRTD +H+S++A R +
Sbjct: 297 QQESNRKLRLSARDTMRVAQNLYE---------QGYITYMRTDSVHLSEQAVTAARECVQ 347
Query: 681 ERYGSHH-APEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWS 739
+ YG+ +P+ PRKY K K+AQEAHEAIRP +GL + L+LY LIW
Sbjct: 348 KLYGNEFLSPQ--PRKYTTKSKSAQEAHEAIRPAGSSFRTPQETGLSGRE-LQLYDLIWK 404
Query: 740 RTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEEN 799
RT+ACQM A Q Q+ + E FRSS R++F GF AY + ++ E
Sbjct: 405 RTVACQM--ADAKQTQITMHLLVEDAGFRSSGKRIDFPGFLRAY-------VEGSDDPEA 455
Query: 800 DRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTL 859
+ IL +LK GD E++ H TQPPAR++E +LVK LE GIGRPSTYAS +
Sbjct: 456 ALEDKEVILPNLKVGDNPSCKELQTVGHETQPPARFTEATLVKTLESEGIGRPSTYASII 515
Query: 860 KVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWK 919
+ D+ Y + + L P F V+ L +FSE+ D SFT+ ME LD++S G EW
Sbjct: 516 GTIVDKGYAQLTNNALIPSFTAFAVTKLLETHFSEIVDPSFTSKMEQTLDDISTGEAEW- 574
Query: 920 GLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKV 979
+ Y +F +L + + E ++ ++ ++P+ + ++
Sbjct: 575 ---LPYLKKFYLGEKGLDTL-VKERESQIDINTSRTVDLNIPD------------VKIRI 618
Query: 980 SRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQR--NTNVDEPKLIGHHPASKEKVLL 1037
+FGA I + L D + + +++ + P +G HP + + + +
Sbjct: 619 GKFGAYLEAENGDEVVTASIPRDLTPSDLDPEKVEKLLKQKTEGPDQVGIHPETAQPIFM 678
Query: 1038 KSGPYGFYVQLGE-DRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPI 1096
GPYG YVQLGE PK+AS+ + +T+E A+ LL P LG HP+ G +
Sbjct: 679 LIGPYGPYVQLGEKSEENPKPKQASLPKNVKPEDVTVEMAVGLLALPRKLGEHPETGASV 738
Query: 1097 MLRLARAGFSVRHRRTIASVPKNMKPND----VTLEKALEFLSGKDVRRCGRPKG-KPKR 1151
L R G V H +++K D V+LE+ALE LS R R KP R
Sbjct: 739 QANLGRFGPYVVHNAKEGKDYRSLKAGDDVLTVSLERALELLSQPKKGRGSRSNAKKPLR 798
Query: 1152 E 1152
E
Sbjct: 799 E 799
>gi|449881522|ref|ZP_21784496.1| DNA topoisomerase I [Streptococcus mutans SA38]
gi|449971248|ref|ZP_21814289.1| DNA topoisomerase I [Streptococcus mutans 2VS1]
gi|449172243|gb|EMB74874.1| DNA topoisomerase I [Streptococcus mutans 2VS1]
gi|449251160|gb|EMC49184.1| DNA topoisomerase I [Streptococcus mutans SA38]
Length = 705
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 248/651 (38%), Positives = 367/651 (56%), Gaps = 57/651 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D+++ +
Sbjct: 21 KNLVIVESPAKAKTIEKYLGRSYKVVASVGHIRDLKKSSMSIDFDNNYEPQYINIRGKGP 80
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ S+K A+ + LASDPDREGEAI+WH+ +L D +N RVVF+EIT+ +
Sbjct: 81 LINSLKKEAKNAKQIFLASDPDREGEAISWHLAHILDL-DLKGKN----RVVFNEITKDA 135
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A R+ID +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI D
Sbjct: 136 VKNAFVEPRQIDMDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIID 195
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI FKP+EYW+++ K F A+ +K+ + S+ + K +
Sbjct: 196 RENEIKAFKPEEYWSIDGFFKKGNK------KFQANFYGLDNKKT---KLKSNDDVKKVL 246
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I + +F V K K+ R P PY TS+LQQDAANK+NF TM +AQ+LYEG++L
Sbjct: 247 TRIKNDDFLVDKVEKKERKRNAPLPYTTSSLQQDAANKINFRTRKTMMVAQQLYEGIRLG 306
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA---QEA 706
GLITYMRTD IS A + + I E +G+ ++ K+ V+NA Q+A
Sbjct: 307 SNGQQGLITYMRTDSTRISPVAQNDAANYITEHFGAEYS------KHGNHVRNASGAQDA 360
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP+++ P ++ LD+D LKLY+LIW+R +A QM A ++V++ S++
Sbjct: 361 HEAIRPSNVNHTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTVKVNL--TQNSVL 418
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
F ++ S+++F G+ A Y D D + L + G+ + +Q
Sbjct: 419 FIANGSQIKFKGYMAVYNDSDKTKV----------------LPEMIKGETVKKISANPEQ 462
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARYSE SL+K LEE G+GRPSTYA TL+ +Q R YV + S+ P G +V++
Sbjct: 463 HFTQPPARYSEASLIKTLEENGVGRPSTYAPTLETIQKRYYVRLVSKRFEPTELGEIVNS 522
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ +F ++ D FTA+ME++LD V G EW+ ++ ++ F A+ Q+EK
Sbjct: 523 LIIEFFPDIVDVKFTAEMESKLDEVEVGKEEWQKVIDQFYKPFEKEVVKAE----EQMEK 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
+ K C VCG ++ K+ R+G F C+ P C+
Sbjct: 579 IQIKDEPAGF---------DCDVCGH-PMVIKLGRYGK--FYACSNFPDCH 617
>gi|379722908|ref|YP_005315039.1| TopA protein [Paenibacillus mucilaginosus 3016]
gi|386725686|ref|YP_006192012.1| TopA protein [Paenibacillus mucilaginosus K02]
gi|378571580|gb|AFC31890.1| TopA [Paenibacillus mucilaginosus 3016]
gi|384092811|gb|AFH64247.1| TopA protein [Paenibacillus mucilaginosus K02]
Length = 701
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 263/679 (38%), Positives = 369/679 (54%), Gaps = 55/679 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES KAK I YLG Y V S GH+RDL V +F + +
Sbjct: 4 SLVIVESPAKAKTISKYLGSKYIVKASMGHIRDLPKSQIGVEVKKNFEPKYITIRGKGSV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A + + LA+DPDREGEAIAWH+ L+ D RVVF+EIT+ ++
Sbjct: 64 LKELKDASKRVKKVYLAADPDREGEAIAWHLAHYLELSDQ-----DACRVVFNEITKQAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+I+ +LV A ARR LD L+G+ ISPLLW+K+ SAGRVQS A+ LI DR
Sbjct: 119 KDAFKTPRKINQDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKLIYDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F+P+EYWT+ A L +S F A F S + + S +E ++
Sbjct: 179 ENEIKAFEPEEYWTITAKLAANKS------DFEAK---FYSVNGEKKELKSQSEVNEVLA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ ++F V + ++ +R P+ITS+LQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 LLGGSDFVVSEVKEKERLRNPSPPFITSSLQQEAARKLNFRAAKTMSVAQQLYEGIDLGS 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A +E + I +YG + P E PR Y KK NAQ+AHEAI
Sbjct: 290 EGTVGLITYMRTDSTRISPVAQEEAKEYITGKYGEAYYPAE-PRNYVKKNANAQDAHEAI 348
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ + R P + L D +LY L+W R +A QM A + + VD+ +VFR+
Sbjct: 349 RPSSVLREPESIKAHLSRDQFRLYKLVWERFVASQMASAVLDTMTVDLNAG--PVVFRAV 406
Query: 771 CSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
S+++F GF Y E D GA +++ L LK GD ++ KQH T
Sbjct: 407 GSKIKFHGFMKVYVESSDEGAADAAADDDK-------FLPPLKQGDEAKPQAIDPKQHFT 459
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LVK LEE+GIGRPSTYA TL+ +Q R YV ++ + P G +V +
Sbjct: 460 QPPPRYTEARLVKALEEMGIGRPSTYAPTLETIQKRGYVAIEEKKFVPTELGELVIQQMI 519
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE---- 945
+F E+ D FTA ME LD++ G +W +L +++ F A+ + ++E
Sbjct: 520 EFFPEILDVEFTAHMEEGLDHIEEGKEDWVRVLSEFYDSFEKRLEVAEE-EMEKIEIQDE 578
Query: 946 ---KMLEKT----------FGDSLFAS-LPN--------KDR--SCPVCGEGTLIFKVSR 981
++ EK FG L S P+ KD +CP C EG +I + S+
Sbjct: 579 VSDEICEKCGNHFVYKMGRFGKFLACSGFPDCRNTKPIVKDTGVTCPSCHEGKIIERRSK 638
Query: 982 FGAGYFIGCNQHPRCNYIA 1000
G F GC+++P C +++
Sbjct: 639 KGR-IFYGCDRYPACEFVS 656
>gi|289434559|ref|YP_003464431.1| DNA topoisomerase I [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289170803|emb|CBH27345.1| DNA topoisomerase I [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 692
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/647 (39%), Positives = 359/647 (55%), Gaps = 48/647 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++V S GHVRDL V + D+ + L
Sbjct: 5 LVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTEHDYEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ--QQDALHENITVARVVFHEITEAS 469
K +K A A+ + LA+DPDREGEAIAWH+ L Q D L RVVF+EIT+ +
Sbjct: 65 KELKQAAKKAKKVYLAADPDREGEAIAWHLANSLDLDQSDKL-------RVVFNEITKEA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K + + R+ID +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL +I D
Sbjct: 118 VKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIID 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FKP+EYWT++ K + F A+ K+ + + + K++
Sbjct: 178 REKEINNFKPEEYWTIDGNFLKGKK------KFQANFYGVNGKKK---KLSTADDVKEVM 228
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I F V +K+ +R P+ TS+LQQ+AA KLN+ TM LAQ+LYEG+ L
Sbjct: 229 STIKGKTFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLG 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E + I E YG + ++ K K AQ+AHEA
Sbjct: 289 KQGTVGLITYMRTDSTRIADSAILEAGNYIKETYGPEFS--RNHKRSDKNAKGAQDAHEA 346
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R P + L D L+LY LIW R +A QM PA + ++VD+ N + FR+
Sbjct: 347 IRPTSAMRSPQAVKEYLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDN--NGVNFRA 404
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+++F GF Y + + KEN IL LK GD + +E +QH T
Sbjct: 405 NGSKIKFHGFMKVYVESNDDNTEEKEN----------ILPDLKKGDKVQSESLEQRQHFT 454
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LVK LEE+GIGRPSTY+ TL +Q RNYV++ ++ P G +V+ +
Sbjct: 455 QPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIE 514
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF E+ D FTA+ME+ELD V G EW ++ +++ +F A + + ++E E
Sbjct: 515 EYFPEILDVKFTANMESELDEVEHGQVEWVKVIDEFYKQFEPNVIKADA-EMEKIEIKDE 573
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C +CG ++FK+ ++G F+ C++ P C
Sbjct: 574 PAGID------------CDLCG-APMVFKMGKYGK--FLACSRFPDC 605
>gi|116872708|ref|YP_849489.1| DNA topoisomerase I [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116741586|emb|CAK20710.1| DNA topoisomerase I [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 692
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/647 (39%), Positives = 361/647 (55%), Gaps = 48/647 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++V S GHVRDL V + D+ + L
Sbjct: 5 LVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTEHDYEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ--QQDALHENITVARVVFHEITEAS 469
K +K A A+ + LA+DPDREGEAIAWH+ L+ Q D L RVVF+EIT+ +
Sbjct: 65 KELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQSDKL-------RVVFNEITKEA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K + + R+ID +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL +I D
Sbjct: 118 VKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIID 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FKP+EYWT++ K + F A+ + K+ + + + K++
Sbjct: 178 REKEINNFKPEEYWTIDGNFLKGKK------KFQANFYGVEGKKK---KLSTADDVKEVM 228
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I F V +K+ +R P+ TS+LQQ+AA KLN+ TM LAQ+LYEG+ L
Sbjct: 229 SAIKGKTFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLG 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E + I E YG + ++ K K AQ+AHEA
Sbjct: 289 KQGTVGLITYMRTDSTRIADSAILEAGNFIKETYGPEFS--RNHKRSDKNAKGAQDAHEA 346
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R P + L D L+LY LIW R +A QM PA + ++VD+ N + FR+
Sbjct: 347 IRPTSAMRSPQEVKEYLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDN--NGVNFRA 404
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+++F GF Y + + KEN IL LK GD + +E +QH T
Sbjct: 405 NGSKIKFHGFMKVYVESNDDNTEEKEN----------ILPDLKKGDKVQSESLEQRQHFT 454
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LVK LEE+GIGRPSTY+ TL +Q RNYV++ ++ P G +V+ +
Sbjct: 455 QPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFVPTELGEIVNEMIE 514
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF E+ D FTA+ME+ELD V G EW ++ +++ +F A + + ++E E
Sbjct: 515 EYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKQFEPNVIKADA-EMEKIEIKDE 573
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C +CG +++K+ ++G F+ C++ P C
Sbjct: 574 PAGID------------CDLCG-APMVYKMGKYGK--FLACSRFPDC 605
>gi|449875645|ref|ZP_21782317.1| DNA topoisomerase I [Streptococcus mutans S1B]
gi|450098228|ref|ZP_21857910.1| DNA topoisomerase I [Streptococcus mutans SF1]
gi|449221796|gb|EMC21553.1| DNA topoisomerase I [Streptococcus mutans SF1]
gi|449253608|gb|EMC51554.1| DNA topoisomerase I [Streptococcus mutans S1B]
Length = 705
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 248/651 (38%), Positives = 367/651 (56%), Gaps = 57/651 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D+++ +
Sbjct: 21 KNLVIVESPAKAKTIEKYLGRSYKVVASVGHIRDLKKSSMSIDFDNNYEPQYINIRGKGP 80
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ S+K A+ + LASDPDREGEAI+WH+ +L D +N RVVF+EIT+ +
Sbjct: 81 LINSLKKEAKNAKQIFLASDPDREGEAISWHLAHILDL-DLKGKN----RVVFNEITKDA 135
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A R+ID +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI D
Sbjct: 136 VKNAFVEPRQIDMDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIID 195
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI FKP+EYW+++ K F A+ +K+ + S+ + K +
Sbjct: 196 RENEIKAFKPEEYWSIDGFFKKGNK------KFQANFYGLDNKKT---KLKSNDDVKKVL 246
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I + +F V K K+ R P PY TS+LQQDAANK+NF TM +AQ+LYEG++L
Sbjct: 247 TRIKNDDFLVDKVEKKERKRNAPLPYTTSSLQQDAANKINFRTRKTMMVAQQLYEGIRLG 306
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA---QEA 706
GLITYMRTD IS A + + I E +G+ ++ K+ V+NA Q+A
Sbjct: 307 SNGQQGLITYMRTDSTRISPVAQNDAANYITEHFGAEYS------KHGNHVRNASGAQDA 360
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP+++ P ++ LD+D LKLY+LIW+R +A QM A ++V++ S++
Sbjct: 361 HEAIRPSNVNHTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTVKVNL--TQNSVL 418
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
F ++ S+++F G+ A Y D D + L + G+ + +Q
Sbjct: 419 FIANGSQIKFKGYMAVYNDSDKTKV----------------LPEMIKGEIVKKISANPEQ 462
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARYSE SL+K LEE G+GRPSTYA TL+ +Q R YV + S+ P G +V++
Sbjct: 463 HFTQPPARYSEASLIKTLEENGVGRPSTYAPTLETIQKRYYVRLVSKRFEPTELGEIVNS 522
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ +F ++ D FTA+ME++LD V G EW+ ++ ++ F A+ Q+EK
Sbjct: 523 LIIEFFPDIVDVKFTAEMESKLDEVEVGKEEWQKVIDQFYKPFEKEVVKAE----EQMEK 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
+ K C VCG ++ K+ R+G F C+ P C+
Sbjct: 579 IQIKDEPAGF---------DCDVCGH-PMVIKLGRYGK--FYACSNFPDCH 617
>gi|312621560|ref|YP_004023173.1| DNA topoisomerase i [Caldicellulosiruptor kronotskyensis 2002]
gi|312202027|gb|ADQ45354.1| DNA topoisomerase I [Caldicellulosiruptor kronotskyensis 2002]
Length = 693
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/649 (38%), Positives = 364/649 (56%), Gaps = 48/649 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK I YLG ++V S GHVRDL V ++ F +
Sbjct: 2 KKLVIVESPAKAKTIAKYLGKEFKVEASMGHVRDLPKSDLGVDIENGFVPKYINIRGKAD 61
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ +K + AE + LA+DPDREGEAI+WH+ +L L N V R+ F+EIT+ +
Sbjct: 62 VINRLKKSAQEAEKVYLATDPDREGEAISWHLATIL----GLDTNDNV-RITFNEITKKA 116
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
++ +L+ AR ID NLV A ARR LD L+G+ +SP LW K+ G SAGRVQS A L+ +
Sbjct: 117 VQESLKNARPIDQNLVNAQQARRVLDRLVGYKLSPFLWEKVKGGLSAGRVQSVATRLVVE 176
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FKP+EYWT+EAV K D F A F + ++ + + + + IE
Sbjct: 177 REEEIENFKPEEYWTLEAVFKK------DVQEFKAK---FYGDKKGKIELKNQDQVQKIE 227
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+KI + F+V+K + P P+ITSTLQQ+A+ KL F+ TM +AQ LYEGV++
Sbjct: 228 EKIKNKEFKVVKIKVSEKKKSPPPPFITSTLQQEASRKLRFTPAKTMAVAQMLYEGVEIK 287
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
+ GLITYMRTD +S+EA + RSLI +++G + PE+ PR Y K K+AQ+AHEA
Sbjct: 288 GEGSVGLITYMRTDSTRVSEEAQQAARSLIVQKFGKEYIPEK-PRVY-KTKKDAQDAHEA 345
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT + P + L D KLY LI+ R +A QM+ + + ++ E +FR
Sbjct: 346 IRPTYLDMDPESIKDSLTLDQYKLYKLIYDRFLASQMESSIYEVLSAEL--EVEGYIFRL 403
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+++F GF Y + G E EEN L ++ G+ L ++E KQH T
Sbjct: 404 TGSKLKFAGFMEVYVE---GKDTEDEEEENQ-------LPEIREGETLKPIKLESKQHFT 453
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP+RY+E +L+K LEE GIGRPSTYA T++ + +R YV + R L P GR+V+ L
Sbjct: 454 QPPSRYTEATLIKALEEKGIGRPSTYAPTIQTILERGYVAKEDRFLKPTELGRIVTNILK 513
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF ++ D FTA++E+ LD + G EW ++ Y+ +EK LE
Sbjct: 514 EYFKDIIDIEFTAELESNLDKIEEGKLEWTEVVKKYY---------------QPLEKELE 558
Query: 950 KTFGDSLFASLPNK--DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
L + ++ D C CG ++ K R+G F+ C +P C
Sbjct: 559 IARATLLKVKVEDEETDIVCENCGR-KMVIKKGRYGK--FLACPGYPEC 604
>gi|157692291|ref|YP_001486753.1| DNA topoisomerase I [Bacillus pumilus SAFR-032]
gi|157681049|gb|ABV62193.1| DNA topoisomerase TopA [Bacillus pumilus SAFR-032]
Length = 691
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 255/645 (39%), Positives = 361/645 (55%), Gaps = 44/645 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GH+RDL V + DF + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHIRDLPKSQLGVDTEHDFEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L + + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLDLDLS-----SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 DSFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+EFKP+EYWT++ K + SF A K+ + + + K+I K
Sbjct: 180 NEINEFKPEEYWTIDGTFLKGKE------SFEASFFGVNGKKH---PLKTKEDVKEILSK 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + F V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LKGSKFSVEKVTKKERKRNPAVPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGKE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A +E+ + I + YG + ++ KK +NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISNTAIEEVSAFIDQTYGKNFL--NTTKRTVKKNENAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT R PA + +L D L+LY LIW R +A QM PA + + VD+ N + FR++
Sbjct: 349 PTSTLRKPADVKHVLSRDQLRLYKLIWERFVASQMAPAVLDTMSVDLDN--NGLTFRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y E +++ E +L LK GD + ++E +QH TQP
Sbjct: 407 SKVKFPGFMKVY----------VEGKDDQLEEKDKMLPDLKEGDTVLSKDIEPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G +V + +
Sbjct: 457 PPRYTEARLVKTLEELGIGRPSTYAPTLDTIQKRGYVALDNKRFIPTELGEIVLNLIIEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME ELD+V G EW ++ ++ F+ + + E +++
Sbjct: 517 FPEIINVEFTAKMEKELDSVEEGTIEWVRIIDSFYQDFAK--------RVEKAEAEMQEV 568
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +A + C CG +++K+ R+G F+ C+ P C
Sbjct: 569 EIEPEYAGV-----DCEECGH-PMVYKMGRYGK--FMACSNFPDC 605
>gi|419782174|ref|ZP_14307983.1| DNA topoisomerase I [Streptococcus oralis SK610]
gi|383183278|gb|EIC75815.1| DNA topoisomerase I [Streptococcus oralis SK610]
Length = 695
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/651 (38%), Positives = 367/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ + + ++ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGMNGKK---MKLTTNEEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F V + K+ R P PY TST+Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 HLTSKDFTVDQVDKKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ K+KN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASYINDRFGSKYS------KHGSKIKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTGAIFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS A+S ++EK+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDAFYKPFSKEVAKAES----EMEKI 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
K C VCG ++ K+ RFG F C+ P C +
Sbjct: 572 QIKDEPAGF---------DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|147669297|ref|YP_001214115.1| DNA topoisomerase I [Dehalococcoides sp. BAV1]
gi|146270245|gb|ABQ17237.1| DNA topoisomerase I [Dehalococcoides sp. BAV1]
Length = 703
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 249/655 (38%), Positives = 367/655 (56%), Gaps = 46/655 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KA+ I LG + ++ + GH+RDL + V +++F+ + A +
Sbjct: 5 LVIVESPAKARTISKMLGKDFNIMATMGHIRDLPKSTLGVDVENNFTPKYVSLKAKAKVI 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A+ ++ + LA+DPDREGEAIAWHI E+ + + RVVFHEIT+ +I
Sbjct: 65 KELKEAVKHSKAIYLATDPDREGEAIAWHISEVTKANLS-----NPKRVVFHEITKEAID 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A + RE+D +LV A ARR LD L+G+ +SPLLWRK+ SAGRVQS +L +I DRE
Sbjct: 120 KAFKNTRELDMDLVNAQQARRVLDRLVGYKLSPLLWRKVQRGLSAGRVQSVSLKIIVDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++F EYW +EA+L KK + + +F A L + +K +L I + +EA I+++
Sbjct: 180 REIEKFVSTEYWNIEALLSKK----VKSAAFKATLAGYVTK--GKLEIHNESEADQIKKE 233
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ +++QV+K ++S +R++P P+ITSTLQQ+A KL FSA TM +AQ+LYEG+ +
Sbjct: 234 LEVSDYQVLKIKRKSNLRQSPAPFITSTLQQEAWRKLRFSAKQTMVIAQQLYEGLNVEGE 293
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD +++ A E R I E+YG + P++ R + KVK AQEAHEAIR
Sbjct: 294 GEVGLITYMRTDSTNVARTAVAETRDYITEKYGPAYLPKQA-RVFSSKVKGAQEAHEAIR 352
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES----IVF 767
PT I R P + L D KLY LIW R MA QM PA +DI + +
Sbjct: 353 PTRINRTPDFIKKSLSADQFKLYQLIWQRMMASQMSPAVFDNTTIDIEAKHQPSKTRYLL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S F GF Y + +++ L ++ G+ L L ++ QH
Sbjct: 413 RTTSSVNTFPGFTIVYIEGKDEDEEKEQSS----------LPPMEEGEELKLKSLDATQH 462
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RY+E +L+K LE+ GIGRPSTYA T+ +Q+R Y+T L P G +V+
Sbjct: 463 FTQPPPRYTEATLIKALEQNGIGRPSTYAPTISTIQEREYITKLKGSLKPSELGMLVNDL 522
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F ++ FTA ME ELD ++ +W ++ ++ F I ++E
Sbjct: 523 LVEHFPDIIGIDFTAAMEAELDKIATEKLDWVPIIRRFYEPF-----------IKEIEAA 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPR----CNY 998
EK + + D CP C L+ K RFG FI C+++ + C Y
Sbjct: 572 SEKI--EKIKPPEEELDELCPECN-AKLVIKRGRFGK--FIACSRYSKEDDGCRY 621
>gi|163119435|ref|YP_079005.2| DNA topoisomerase I [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319646007|ref|ZP_08000237.1| DNA topoisomerase 1 [Bacillus sp. BT1B_CT2]
gi|404489102|ref|YP_006713208.1| DNA topoisomerase I [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423682155|ref|ZP_17656994.1| DNA topoisomerase I [Bacillus licheniformis WX-02]
gi|52348093|gb|AAU40727.1| DNA topoisomerase I [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|145902942|gb|AAU23367.2| DNA topoisomerase I [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317391757|gb|EFV72554.1| DNA topoisomerase 1 [Bacillus sp. BT1B_CT2]
gi|383438929|gb|EID46704.1| DNA topoisomerase I [Bacillus licheniformis WX-02]
Length = 691
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/646 (40%), Positives = 360/646 (55%), Gaps = 46/646 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L L N + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLD----LDLN-SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVE-AVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
EI++F P+EYWT+E + L KE+ F + + S + K I
Sbjct: 180 KEINDFIPEEYWTIEGSFLKGKETFEASFFGINGE----------KHQLKSEDDVKQILS 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+I F+V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 RIKGNKFEVKKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS+ A +E S I E+YG + RK KK +NAQ+AHEAI
Sbjct: 290 EGTVGLITYMRTDSTRISNTAQEEAASFIGEQYGKEFLGSK--RKPAKKNENAQDAHEAI 347
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT + R P+ L +L D L+LY LIW R +A QM PAT+ + VD+ N + FR++
Sbjct: 348 RPTSVLRKPSDLKAVLGRDQLRLYKLIWERFVASQMAPATLDTMSVDLEN--NGLTFRAN 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+V+F GF Y E +++ E +L L GD + ++E +QH TQ
Sbjct: 406 GSKVKFSGFMKVY----------VEGKDDQMEEKNKMLPDLAEGDTVLSKDIEPEQHFTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G +V +
Sbjct: 456 PPPRYTEARLVKTLEELGIGRPSTYAPTLDTIQKRGYVALDNKRFIPTELGEIVLDLIME 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F E+ + FTA ME ELD+V G +W ++ ++ F + + E +++
Sbjct: 516 FFPEIINVEFTAKMEKELDDVEDGNIQWVQIIDSFYKDFEK--------RVEKAEAEMQE 567
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +A + C CG +++K+ R+G F+ C+ P C
Sbjct: 568 VEIEPEYAGV-----DCEACGH-PMVYKMGRYGK--FMACSNFPDC 605
>gi|78776372|ref|YP_392687.1| DNA topoisomerase I [Sulfurimonas denitrificans DSM 1251]
gi|78496912|gb|ABB43452.1| DNA topoisomerase I [Sulfurimonas denitrificans DSM 1251]
Length = 743
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/650 (38%), Positives = 368/650 (56%), Gaps = 53/650 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMV--WEVPSAAW 408
++++VES KAK I+ +LG YEV+ S GH+RDL + D++ ++ + V
Sbjct: 2 NLIIVESPAKAKTIKNFLGKEYEVIASKGHIRDLPKSRFGITVDENSHLIPAYSVAKENA 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+K I ++ + +A+D DREGEAI WHI +++ A + R+VFHEIT+
Sbjct: 62 ATVKEITTLAKKSDIIYIATDEDREGEAIGWHIAHAIKKDPA-----ELPRIVFHEITKT 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I+ AL AR+ID ++V A ARR LD ++G+ +SPLL K+ SAGRVQS+ L L+
Sbjct: 117 AIENALLNARKIDMDMVNAQQARRILDRVVGYKLSPLLSSKIQKGLSAGRVQSSTLKLVV 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI F +EYWT++ + K A L ++L++LSI + +A I
Sbjct: 177 DREREIRAFVAEEYWTIDTLFAK---------DIEASLISHMGEKLSKLSITNKADASSI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ + +F + K + P P++TSTLQQ A++KL F+ TM +AQ LYEGV+
Sbjct: 228 VKSVKEDSFIISKIETKERRSATPPPFMTSTLQQVASSKLGFTPKKTMMVAQTLYEGVKT 287
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
P GT+ G+ITYMRTD L+++ EA +R LI R+G + P E P+ Y KK K AQEAHE
Sbjct: 288 PSGTS-GVITYMRTDSLNLAHEALTAVRGLIESRFGKKYLPAE-PKIYTKKAKGAQEAHE 345
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + P + + L D +KLY LI+ R ++CQM A Q + A+ ++
Sbjct: 346 AIRPTMLAFTPEVAASFLKPDEIKLYRLIYERFVSCQMNDAVFEQQSIIFSGANNE--YK 403
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ ++ F GF A GA E+ D+ +L SL G + ++E QH
Sbjct: 404 AIGRKLTFDGFYAL-----TGA------EDKDK-----LLPSLSEGQSAQIQKIESTQHF 447
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PPARYSE +L+KKLE GIGRPSTYA T+ L +R YVT++ + + P V+ L
Sbjct: 448 TEPPARYSEAALIKKLESEGIGRPSTYAPTIATLSNRTYVTIEKKQIIPTEMAFTVTEIL 507
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
FS + D SFTA+ME +LD ++ G +W+ LL D++ F + QVE+
Sbjct: 508 EKNFSNIVDLSFTANMEEKLDEIAEGQNDWQKLLSDFYGDF-----------LAQVEE-- 554
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
KT SL + P R+CP CGE L+ + RFG FI C+ P+C Y
Sbjct: 555 GKTNIVSLKMATP-LGRACPKCGE-ELLLRSGRFGE--FIACSAFPKCKY 600
>gi|398310708|ref|ZP_10514182.1| DNA topoisomerase I [Bacillus mojavensis RO-H-1]
Length = 691
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 266/677 (39%), Positives = 371/677 (54%), Gaps = 58/677 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L L N + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLD----LDLN-SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++FKP+EYWT++ K + +TF F K +L + S + KDI +
Sbjct: 180 KEINDFKPEEYWTIDGTFLKGQ----ETFE-----ASFFGKNGKKLPLKSEADVKDILSQ 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LKGNKYTVEKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGKE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A E + I + YG + G RK KK +NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISNTAVDEAAAFIDQTYGKEYLG--GKRKPAKKNENAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R P+ L +L D L+LY LIW R +A QM A + + VD+ N + FR++
Sbjct: 349 PTSVLRKPSELKAVLGRDQLRLYKLIWERFVASQMASAVLDTMSVDLTN--NGLTFRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F YE Y E +++ E +L L+ GD + ++E +QH TQP
Sbjct: 407 SKVKF---SWVYE-------VYVEGKDDQLEEKDRMLPDLQEGDTVLSKDIEPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G++V + +
Sbjct: 457 PPRYTEARLVKTLEELGIGRPSTYAPTLDTIQRRGYVGLDNKRFVPTELGQIVLELIMEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LDNV G EW ++ ++++ F A+S + +VE E
Sbjct: 517 FPEIINVEFTAKMEKDLDNVEEGNIEWVQIIDNFYTDFEKRVKKAES-EMKEVEIEPEYA 575
Query: 952 FGDSLFASLPNKDR----------------------------SCPVCGEGTLIFKVSRFG 983
D S P + CP CGEG ++ + S+
Sbjct: 576 GEDCELCSSPMVYKMGRYGKFLACSNFPDCRNTKPIVKQIGVKCPSCGEGNIVERKSK-K 634
Query: 984 AGYFIGCNQHPRCNYIA 1000
F GC+++P C +++
Sbjct: 635 KRIFYGCDRYPDCEFVS 651
>gi|357008057|ref|ZP_09073056.1| TopA [Paenibacillus elgii B69]
Length = 700
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 261/678 (38%), Positives = 370/678 (54%), Gaps = 54/678 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES KAK I YLG Y V S GH+RDL V +F + +
Sbjct: 4 SLVIVESPAKAKTISKYLGSKYIVKASMGHIRDLPKSQIGVEVKKNFEPKYITIRGKGSV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK +K A + + LA+DPDREGEAIAWH+ L+ D RVVF+EIT+ ++
Sbjct: 64 LKELKDASKRVKKVYLAADPDREGEAIAWHLAHYLELSDQ-----DACRVVFNEITKQAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+I+ +LV A ARR LD L+G+ ISPLLW+K+ SAGRVQS A+ LI DR
Sbjct: 119 KDAFKTPRKINQDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKLIYDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F+P+EYWT+ A L ++ F A F S + + + TE +
Sbjct: 179 ENEIKAFEPEEYWTITAKLSSGKA------DFEAK---FYSLDGEKKELKNETEVNAVLA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ A F V + ++ +R P+ITS+LQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 GLQKAEFIVSEVKEKERLRNPSPPFITSSLQQEAARKLNFRAAKTMSVAQQLYEGIDLGS 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A +E + I +++G PE PR Y KK NAQ+AHEAI
Sbjct: 290 EGTVGLITYMRTDSTRISPVAQEEAKDYIVQKFGESFYPE-TPRVYLKKNSNAQDAHEAI 348
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ + R P + L D +LY L+W R +A QM A + + VD+ A S +FR+
Sbjct: 349 RPSSVLREPDQIKEHLSRDQYRLYKLVWERFVASQMASAVLDTMTVDLTAA--STIFRAV 406
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+V+F GF Y + ++ D + +L LK GD + +++ KQH TQ
Sbjct: 407 GSKVKFHGFMKVY-------VEGNDDAAADTGDDDKLLPPLKEGDKVKKQQIDPKQHFTQ 459
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP R++E LVK LEE+GIGRPSTYA TL+ +Q R YV ++ + P G +V +
Sbjct: 460 PPPRFTEARLVKALEEMGIGRPSTYAPTLETIQKRGYVAIEEKKFVPTELGELVIQLMIE 519
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE----- 945
+F E+ D FTA ME LD++ G +W +L +++ F A+ + +VE
Sbjct: 520 FFPEILDVDFTAHMEEGLDHIEEGKEDWVRVLSEFYESFEKRLEVAEE-EMEKVEIQDEV 578
Query: 946 --KMLEKT----------FGDSLFAS-LPN--------KDR--SCPVCGEGTLIFKVSRF 982
++ EK FG L S P+ KD +CP C EG +I + S+
Sbjct: 579 SDEICEKCGRHFVYKMGRFGKFLACSGFPDCRNTKPIVKDTGVTCPNCHEGKIIERRSKK 638
Query: 983 GAGYFIGCNQHPRCNYIA 1000
G F GC+++P C++++
Sbjct: 639 GR-IFYGCDRYPGCDFVS 655
>gi|402817563|ref|ZP_10867151.1| DNA topoisomerase 1 [Paenibacillus alvei DSM 29]
gi|402505085|gb|EJW15612.1| DNA topoisomerase 1 [Paenibacillus alvei DSM 29]
Length = 667
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 258/649 (39%), Positives = 354/649 (54%), Gaps = 57/649 (8%)
Query: 379 GHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIA 438
GHVRDL V +D+F+ + + LK +K A + + LA+DPDREGEAIA
Sbjct: 2 GHVRDLPKSQIGVEIEDNFAPKYITIRGKGSVLKELKDARKKVKKVYLAADPDREGEAIA 61
Query: 439 WHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLI 498
WH+ L+ + RVVF+EIT+ ++K A + R+I+ +LV A ARR LD L+
Sbjct: 62 WHLAHALELDQS-----EACRVVFNEITKQAVKDAFKTPRQINMDLVHAQQARRILDRLV 116
Query: 499 GFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLD 558
G+ ISPLLW+K+ SAGRVQS ++ LI DRE EI F P+EYWT+ A L+ +S
Sbjct: 117 GYKISPLLWKKVKKGLSAGRVQSVSVKLIIDRENEISAFIPEEYWTITARLNIGKS---- 172
Query: 559 TFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITS 618
SF A F S + + + E ++ Q I ++F V + +R +R P+ TS
Sbjct: 173 --SFDAK---FYSMNGEKRELSNEAEVNEVLQAIKGSSFVVHEVKERERLRHPSPPFTTS 227
Query: 619 TLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSL 678
+LQQ+AA KLNF A TM +AQ+LYEGV L GLITYMRTD IS A +E
Sbjct: 228 SLQQEAARKLNFRAAKTMSVAQQLYEGVDLGKEGTVGLITYMRTDSTRISQTAQEEAGEY 287
Query: 679 IFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIW 738
I ++YG+ PE PR+Y KK NAQ+AHEAIRPT I R P + L D L+LY LIW
Sbjct: 288 IKDQYGNEFLPE-TPRQYVKKSANAQDAHEAIRPTSIMRSPDEMKSYLSRDQLRLYKLIW 346
Query: 739 SRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENE 797
R +A QM A + + VDI + + FR++ S++ F GF Y E D G +
Sbjct: 347 ERFVASQMTSAIMDTMTVDIKTGEAT--FRANGSKIRFPGFMKVYVEGNDDGTV------ 398
Query: 798 ENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYAS 857
E+D+ L L GD + ++E KQH TQPP RY+E LVK LEELGIGRPSTYA
Sbjct: 399 EDDK-----FLPPLAVGDSMKTEQIEPKQHFTQPPPRYTEARLVKTLEELGIGRPSTYAP 453
Query: 858 TLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTE 917
TL+ +Q R YV ++ + P G ++ + +F E+ D FTA ME +LD+V G +
Sbjct: 454 TLETIQKRGYVAIEEKKFVPTELGELIIQLMEEFFPEILDVEFTAHMEEDLDHVGEGQQD 513
Query: 918 WKGLLVDYWSRFSSYCTCAQSLHI------------------HQVEKM--LEKTFGDSLF 957
W +L D++ F A+ H V KM K S F
Sbjct: 514 WVKVLADFYESFEKRLLVAEEEMKEIEIEDEVSDEICEKCGRHFVYKMGRFGKFLACSGF 573
Query: 958 ASLPN-----KDR--SCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYI 999
N KD +CP C EG L+ + S+ G F GC+++P C+++
Sbjct: 574 PECRNTRPIVKDTGVTCPKCHEGKLVERRSKKGR-VFYGCDRYPECDHV 621
>gi|392971853|ref|ZP_10337245.1| DNA topoisomerase [Staphylococcus equorum subsp. equorum Mu2]
gi|403046823|ref|ZP_10902292.1| DNA topoisomerase I [Staphylococcus sp. OJ82]
gi|392509566|emb|CCI60535.1| DNA topoisomerase [Staphylococcus equorum subsp. equorum Mu2]
gi|402763519|gb|EJX17612.1| DNA topoisomerase I [Staphylococcus sp. OJ82]
Length = 689
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 256/681 (37%), Positives = 371/681 (54%), Gaps = 64/681 (9%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
+++V+VES KAK I+ YLG Y+V+ S GHVRDL V ++DF +
Sbjct: 3 ENLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDDENDFEPKYITIRGKGP 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+K +K A+ + LASDPDREGEAIAWH+ +L ++++ EN RVVF+EIT+ +
Sbjct: 63 VVKELKKHAKKAKKIFLASDPDREGEAIAWHLANILNLEESV-EN----RVVFNEITKDA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K + + R I+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ D
Sbjct: 118 VKDSFKHPRGIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVID 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI FKP+EYW ++ K+S F A H ++K + + + + I
Sbjct: 178 RENEIRNFKPEEYWKIDGEFRYKKS------KFNAKFLHLKNK---PFKLTNKDDVEKIT 228
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+++ F+V K +K+ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 229 AQLDGDQFEVTKVTKKEKTRYPANPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLK 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD +SD+A E +S I E YG+++ + K + Q+AHEA
Sbjct: 289 RQGTVGLITYMRTDSTRVSDQAKSEAKSYIEETYGNNYLS----NRKAKGQQGDQDAHEA 344
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRP+ R P + L D +LY LIW R +A QM PA + + +D+ D + FR+
Sbjct: 345 IRPSGTLRTPNEMKNYLTRDQHRLYKLIWERFVASQMAPAILDTVAMDLTQND--LKFRA 402
Query: 770 SCSRVEFLGFQAAY---EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
+ ++F GF Y D D G KEN+ L ++ G+ + +E Q
Sbjct: 403 NGQTIKFKGFMTLYIETTDDDEGG---KENK----------LPKIEEGEMVTATNIEPSQ 449
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H+TQPP RY+E LVK +EEL IGRPSTYA T+ +Q RNYV +S+ P G +V
Sbjct: 450 HYTQPPPRYTEARLVKTMEELKIGRPSTYAPTIDTIQKRNYVKNESKRFVPTELGEIVHE 509
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFS---------------- 930
+ YF E+ D FT +MET LD V+ G WK ++ D++S FS
Sbjct: 510 QVKDYFPEIIDVDFTVNMETLLDKVADGEIPWKKVIRDFYSSFSQDVERAEEEMEKIEIK 569
Query: 931 --------SYCTCAQSLHIHQVEKMLE-KTFGD--SLFASLPNKDRSCPVCGEGTLIFKV 979
C + + + K + F D + A + +CP C EG ++ +
Sbjct: 570 DEPAGEDCELCGSPMVIKMGRYGKFMACSNFPDCRNTKAIIKTIGVTCPKCKEGDVVERK 629
Query: 980 SRFGAGYFIGCNQHPRCNYIA 1000
S+ +F GC+++P C+++
Sbjct: 630 SKKNRIFF-GCSKYPECDFVT 649
>gi|311068133|ref|YP_003973056.1| DNA topoisomerase I [Bacillus atrophaeus 1942]
gi|310868650|gb|ADP32125.1| DNA topoisomerase I [Bacillus atrophaeus 1942]
Length = 691
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 268/677 (39%), Positives = 372/677 (54%), Gaps = 58/677 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L L N + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLD----LDLN-SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+EFKP+EYWT++ K + +TF F K +L + S + K+I +
Sbjct: 180 KEINEFKPEEYWTIDGSFLKGQ----ETFE-----ASFFGKGGKKLPLKSEADVKEILSQ 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LKGNKYTVEKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGKE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A +E + I + YG G RK KK +NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISNTAVEEAAAFIDQTYGKEFLG--GKRKPAKKNENAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT I R P L +L D L+LY LIW R +A QM A + + VD+ N + FR++
Sbjct: 349 PTSILRKPNELKTVLGRDQLRLYKLIWERFVASQMASAVLDTMSVDLEN--NGLTFRATG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y + + EE DR +L L+ GD + ++E +QH TQP
Sbjct: 407 SKVKFSGFMKVYVEGKDDQL-----EEKDR-----MLPDLQEGDTVLSKDIEPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G++V + +
Sbjct: 457 PPRYTEARLVKTLEELGIGRPSTYAPTLDTIQRRGYVGLDNKRFVPTELGQIVLELIMEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LDNV G TEW ++ +++ F A++ + +VE E
Sbjct: 517 FPEIINVEFTARMEQDLDNVEDGNTEWVQIIDRFYTDFEKRVKKAEA-EMKEVEIEPEYA 575
Query: 952 FGDSLFASLPNKDR----------------------------SCPVCGEGTLIFKVSRFG 983
D S P + CP C EG ++ + S+
Sbjct: 576 GEDCELCSSPMVYKMGRYGKFLACSNFPDCRNTKPIVKQIGVKCPKCEEGNIVERKSK-K 634
Query: 984 AGYFIGCNQHPRCNYIA 1000
F GC+++P+C++++
Sbjct: 635 KRVFYGCDRYPQCDFVS 651
>gi|375090697|ref|ZP_09737010.1| DNA topoisomerase I [Facklamia languida CCUG 37842]
gi|374565118|gb|EHR36394.1| DNA topoisomerase I [Facklamia languida CCUG 37842]
Length = 687
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 257/649 (39%), Positives = 360/649 (55%), Gaps = 49/649 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES TKAK I YLG Y+V+ S GH+RDL V +++F +
Sbjct: 4 KYLVIVESPTKAKTIDKYLGRNYKVVASKGHLRDLPKSKMGVDIENNFEPHYISIRGRGD 63
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+K ++ AE + LASDPDREGEAIAWH+ +L D + RV F+EIT+ S
Sbjct: 64 TIKELRKLAGKAEKVYLASDPDREGEAIAWHLAYLLNLDDQ-----DLNRVAFNEITKES 118
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A + R+ID +LV A ARR LD ++G++ISP+LW+K+ G SAGRVQS AL +I D
Sbjct: 119 VKEAFKQPRQIDQDLVDAQQARRILDRIVGYSISPILWKKIKGGLSAGRVQSTALKIIID 178
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI +FKP+EYWT+ A+ K S F L ++ NQ ++ D E
Sbjct: 179 REQEIRDFKPEEYWTLPAIFKKGRSKFEAEFY---GLNGDKTDLPNQAAVDQVLSQIDQE 235
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+F V + ++ RK PY TSTLQQDAAN+LNF A TM +AQ+LYEG+++
Sbjct: 236 -----GDFTVDQIEEKERRRKPYLPYTTSTLQQDAANRLNFRAGKTMMVAQQLYEGIKIK 290
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
+ T GLITYMRTD IS A + I +RYG+ + G + K AQ+AHEA
Sbjct: 291 NST-VGLITYMRTDSTRISANARQMAEGYIKDRYGAAYL---GAGRQAAKASGAQDAHEA 346
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
+RP+++ P + L D +LYSLIW+R +A QM A I+VD+ + FR+
Sbjct: 347 VRPSNVNLAPESIKDALTRDQYRLYSLIWARFLASQMSEAVFDTIRVDLSQG--PVGFRA 404
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ SR++F GF Y + ++++ AI +++K P +E QH T
Sbjct: 405 NGSRIKFDGFLKVYP---------SKTDKDNYLPDLAIGDTVKPAQP-----IEGDQHFT 450
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPPARY+E SLVK LEELGIGRPSTYA T++ L+ R YV ++++ P G +V+ +
Sbjct: 451 QPPARYTEASLVKTLEELGIGRPSTYAPTIETLRKRYYVRMEAKRFEPTELGEIVNGVME 510
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF ++ + FTA ME LD V AG EWK +L DY+ A+S I +E E
Sbjct: 511 GYFPDIVNTEFTAGMEDHLDQVEAGKEEWKQVLSDYYQVLDKDLKQAES-QIEAIEIKDE 569
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
D CP CG ++ K+ R+G F C+ P C +
Sbjct: 570 PAGFD------------CPECGH-PMVIKIGRYGK--FYACSNFPDCRH 603
>gi|450035153|ref|ZP_21834842.1| DNA topoisomerase I [Streptococcus mutans M21]
gi|449195792|gb|EMB97100.1| DNA topoisomerase I [Streptococcus mutans M21]
Length = 705
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 247/651 (37%), Positives = 367/651 (56%), Gaps = 57/651 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D+++ + +
Sbjct: 21 KNLVIVESPAKAKTIEKYLGRSYKVVASVGHIRDLKKSSMSIDFDNNYEPQYINIRGKGS 80
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ S+K A+ + LASDPDREGEAI+WH+ +L D +N RVVF+EIT+ +
Sbjct: 81 LINSLKKEAKNAKQIFLASDPDREGEAISWHLAHILDL-DLKGKN----RVVFNEITKDA 135
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A R+ID +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI D
Sbjct: 136 VKNAFVEPRQIDMDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIID 195
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI FKP+EYW+++ K F A+ +K+ + S+ + K +
Sbjct: 196 RENEIKAFKPEEYWSIDGFFKKVNK------KFQANFYGLDNKKT---KLKSNDDVKKVL 246
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I + +F V K K+ R P PY TS+LQQDAANK+NF TM +AQ+LYEG++L
Sbjct: 247 TRIKNDDFLVDKVEKKERKRNAPLPYTTSSLQQDAANKINFRTRKTMMVAQQLYEGIRLG 306
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA---QEA 706
GLITYMRTD IS A + + I E +G+ ++ K+ V+NA Q+A
Sbjct: 307 SNGQQGLITYMRTDSTRISPVAQNDAANYITEHFGAEYS------KHGNHVRNASGAQDA 360
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP+++ P ++ LD+D LKLY+LIW+R +A QM A ++V++ ++
Sbjct: 361 HEAIRPSNVNHTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTVKVNL--TQNGVL 418
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
F ++ S+++F G+ A Y D D + L + G+ + +Q
Sbjct: 419 FIANGSQIKFKGYMAVYNDSDKTKV----------------LPEMIKGETVKKISANPEQ 462
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARYSE SL+K LEE G+GRPSTYA TL+ +Q R YV + S+ P G +V++
Sbjct: 463 HFTQPPARYSEASLIKTLEENGVGRPSTYAPTLETIQKRYYVRLVSKRFEPTELGEIVNS 522
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ +F ++ D FTA+ME++LD V G EW+ ++ ++ F A+ Q+EK
Sbjct: 523 LIIEFFPDIVDVKFTAEMESKLDEVEVGKEEWQKVIDQFYKPFEKEVVKAE----EQMEK 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
+ K C VCG ++ K+ R+G F C+ P C+
Sbjct: 579 IQIKDEPAGF---------DCDVCGH-PMVIKLGRYGK--FYACSNFPDCH 617
>gi|449976129|ref|ZP_21816107.1| DNA topoisomerase I [Streptococcus mutans 11VS1]
gi|449175857|gb|EMB78233.1| DNA topoisomerase I [Streptococcus mutans 11VS1]
Length = 705
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 248/651 (38%), Positives = 367/651 (56%), Gaps = 57/651 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D+++ +
Sbjct: 21 KNLVIVESPAKAKTIEKYLGRSYKVVASVGHIRDLKKSSMSIDFDNNYEPQYINIRGKGP 80
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ S+K A+ + LASDPDREGEAI+WH+ +L D +N RVVF+EIT+ +
Sbjct: 81 LINSLKKEAKNAKQIFLASDPDREGEAISWHLAHILDL-DLKGKN----RVVFNEITKDA 135
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A R+ID +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI D
Sbjct: 136 VKNAFVEPRQIDMDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIID 195
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI FKP+EYW+++ K F A+ +K+ + S+ + K +
Sbjct: 196 RENEIKAFKPEEYWSIDGFFKKGNK------KFQANFYGLDNKKT---KLKSNDDVKKVL 246
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I + +F V K K+ R P PY TS+LQQDAANK+NF TM +AQ+LYEG++L
Sbjct: 247 TRIKNDDFLVDKVEKKERKRNAPLPYTTSSLQQDAANKINFRTRKTMMVAQQLYEGIRLG 306
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA---QEA 706
GLITYMRTD IS A + + I E +G+ ++ K+ V+NA Q+A
Sbjct: 307 SNGQQGLITYMRTDSTRISPVAQNDAANYITEHFGAEYS------KHGNHVRNASGAQDA 360
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP+++ P ++ LD+D LKLY+LIW+R +A QM A ++V++ S++
Sbjct: 361 HEAIRPSNVNHTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTVKVNL--TQNSVL 418
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
F ++ S+++F G+ A Y D D + L + G+ + +Q
Sbjct: 419 FIANGSQIKFKGYMAVYNDSDKTKV----------------LPEMIKGEIVKKISANPEQ 462
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARYSE SL+K LEE G+GRPSTYA TL+ +Q R YV + S+ P G +V++
Sbjct: 463 HFTQPPARYSEASLIKTLEENGVGRPSTYAPTLETIQKRYYVRLVSKRFEPTELGEIVNS 522
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ +F ++ D FTA+ME++LD V G EW+ ++ ++ F A+ Q+EK
Sbjct: 523 LIIEFFPDIVDVKFTAEMESKLDEVEVGKEEWQKVIDQFYKPFEKEVVKAE----EQMEK 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
+ K C VCG ++ K+ R+G F C+ P C+
Sbjct: 579 IQIKDEPAGF---------DCDVCGH-PMVIKLGRYGK--FYACSNFPDCH 617
>gi|322375363|ref|ZP_08049876.1| DNA topoisomerase [Streptococcus sp. C300]
gi|321279626|gb|EFX56666.1| DNA topoisomerase [Streptococcus sp. C300]
Length = 701
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/651 (39%), Positives = 366/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 21 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 80
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 81 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILD----LDEN-DANRVVFNEITKDAV 135
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 136 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 195
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ + + ++ E K++
Sbjct: 196 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGMNGKK---MKLTTNEEVKEVLS 246
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F V + K+ R P PY TST+Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 247 HLTSKDFIVDQVDKKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGINIGS 306
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I R+GS ++ K+ KVKN AQ+AH
Sbjct: 307 GV-QGLITYMRTDSTRISPVAQNEAASYINNRFGSKYS------KHGSKVKNASGAQDAH 359
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 360 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTGAIFDTMAVKL--SQNGVQF 417
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 418 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 461
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 462 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 521
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ L+ ++ FS A+S ++EK+
Sbjct: 522 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRLIDAFYKPFSKEVAKAES----EMEKI 577
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
K C VCG ++ K+ RFG F C+ P C +
Sbjct: 578 QIKDEPAGF---------DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 616
>gi|194337811|ref|YP_002019605.1| DNA topoisomerase I [Pelodictyon phaeoclathratiforme BU-1]
gi|194310288|gb|ACF44988.1| DNA topoisomerase I [Pelodictyon phaeoclathratiforme BU-1]
Length = 798
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 273/762 (35%), Positives = 409/762 (53%), Gaps = 64/762 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
++++VVES +KAK I YLGD Y V S GH++DL + + D + +E+
Sbjct: 13 RTLIVVESPSKAKTINKYLGDKYTVFASVGHIKDLPKKEIGLDFDHHYEPRYEIIPGKEK 72
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ +K + A+++++A+DPDREGEAIAWHI + + V+RV+F+EIT+ +
Sbjct: 73 VVHQLKKLAAEADSILIATDPDREGEAIAWHISKEIGVTSK-----PVSRVLFNEITKTA 127
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I A+QA R+ID LV++ R+ LD ++G+ ISP LW + SAGRVQS AL LIC+
Sbjct: 128 IIAAIQAPRQIDDRLVRSQQTRQGLDKIVGYKISPFLWNVVLRGLSAGRVQSVALRLICE 187
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI F+ QEYW++ A E + SF A L F+ ++ I + +A+ +
Sbjct: 188 REAEISRFQIQEYWSIAA-----EFVTAGKESFKARLIRFEG---DKPEIANQKQAEALA 239
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I NF V + + R RK P P+ TS LQQ A+N+L F + TM +AQ+LYEG+ L
Sbjct: 240 ALIRKGNFAVREIAPRVQQRKQPLPFTTSLLQQAASNQLGFGSKKTMGVAQQLYEGIDLG 299
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I +EA E RS I +++G + G K KNAQ+AHEA
Sbjct: 300 KEGTTGLITYMRTDSTRIGEEAIAEARSYINQQFGKEYIGFGGAAK---PGKNAQDAHEA 356
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT I P + L D KLY LIW R +A M A + Q +VD+ ++ +FR+
Sbjct: 357 IRPTSIFNKPDQVKPYLSADQFKLYELIWKRFLASMMSAAKIEQTRVDVEDSASKFLFRA 416
Query: 770 SCSRVEFLGFQAAYED---VDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
+ SRV F GF Y+D +D A + EE ++ + L +PL L +++ KQ
Sbjct: 417 TGSRVLFPGFMRVYDDQKELDYEA-QTSTKEEVEKELTVKLPERLAVNEPLALDDLDQKQ 475
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
T+PPARYSE +LVK L+ GIGRPSTYAS LQDR YV ++ + + P G+ VS
Sbjct: 476 SFTRPPARYSEATLVKDLDHFGIGRPSTYASIFSTLQDRRYVELEKKKIVPTELGKDVSL 535
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
L F ++ + FTA ME ELD V++G E++ +L ++ + LH+ +
Sbjct: 536 ILVANFPDLFNVDFTAFMENELDKVASGEDEYEKVLDSFYKPLEAV------LHLRKSNP 589
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGD 1006
++ + ++ +C CGEG ++ K + G F GC+ +P+C I
Sbjct: 590 IVPQN----------SEPVTCEKCGEGLMVVKWT--ANGKFFGCSCYPKCKNIKAI---- 633
Query: 1007 DDEEDTLQRNTNVDEPKLIGHHPASKE-KVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
+ + VD L P+ KE +LL+SG +G ++ +GY PK ++ ++
Sbjct: 634 -----SNNKAKPVDSAILC---PSCKEGHMLLRSGRFGTFLAC----SGY-PKCNTLLNL 680
Query: 1066 KDVDSITLEDALELLRYPVNLGNH--PKDGQPIMLRLARAGF 1105
+ +E ++ P L PK G P+ LR + G
Sbjct: 681 NK------QRHIEPMKTPPVLTTLLCPKCGSPLYLRSGKRGL 716
>gi|418085304|ref|ZP_12722486.1| DNA topoisomerase I [Streptococcus pneumoniae GA47281]
gi|418150719|ref|ZP_12787467.1| DNA topoisomerase I [Streptococcus pneumoniae GA14798]
gi|418157266|ref|ZP_12793982.1| DNA topoisomerase I [Streptococcus pneumoniae GA16833]
gi|418171159|ref|ZP_12807786.1| DNA topoisomerase I [Streptococcus pneumoniae GA19451]
gi|418198065|ref|ZP_12834526.1| DNA topoisomerase I [Streptococcus pneumoniae GA47778]
gi|419425260|ref|ZP_13965457.1| DNA topoisomerase I [Streptococcus pneumoniae 7533-05]
gi|419438337|ref|ZP_13978407.1| DNA topoisomerase I [Streptococcus pneumoniae GA13499]
gi|419446689|ref|ZP_13986694.1| DNA topoisomerase I [Streptococcus pneumoniae 7879-04]
gi|353757259|gb|EHD37853.1| DNA topoisomerase I [Streptococcus pneumoniae GA47281]
gi|353815145|gb|EHD95366.1| DNA topoisomerase I [Streptococcus pneumoniae GA14798]
gi|353823714|gb|EHE03888.1| DNA topoisomerase I [Streptococcus pneumoniae GA16833]
gi|353837329|gb|EHE17415.1| DNA topoisomerase I [Streptococcus pneumoniae GA19451]
gi|353863447|gb|EHE43375.1| DNA topoisomerase I [Streptococcus pneumoniae GA47778]
gi|379538342|gb|EHZ03523.1| DNA topoisomerase I [Streptococcus pneumoniae GA13499]
gi|379614229|gb|EHZ78939.1| DNA topoisomerase I [Streptococcus pneumoniae 7879-04]
gi|379619697|gb|EHZ84367.1| DNA topoisomerase I [Streptococcus pneumoniae 7533-05]
Length = 677
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/647 (38%), Positives = 366/647 (56%), Gaps = 58/647 (8%)
Query: 355 VESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSI 414
+ES KAK I+ YLG Y+VL S GH+RDL S SV ++++ + + +
Sbjct: 1 MESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPLINDL 60
Query: 415 KVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVAL 474
K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++K A
Sbjct: 61 KKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAVKNAF 115
Query: 475 QAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEI 534
+ R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DRE EI
Sbjct: 116 KEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDRENEI 175
Query: 535 DEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINS 594
+ F+P+EYWTV+AV K T F A K+ + + S+ E K++ ++ S
Sbjct: 176 NAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNDEVKEVLSRLTS 226
Query: 595 ANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAA 654
+F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ + G
Sbjct: 227 KDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGSGV-Q 285
Query: 655 GLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAHEAIR 711
GLITYMRTD IS A E+ S I +R+GS ++ K+ KVKN AQ+AHEAIR
Sbjct: 286 GLITYMRTDSTRISPVAQNEVASFITDRFGSKYS------KHGSKVKNASGAQDAHEAIR 339
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
P+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + + F ++
Sbjct: 340 PSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQKGVQFAANG 397
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F G+ A Y D D +L + GD + + +QH TQP
Sbjct: 398 SQVKFDGYLAIYNDSDKN----------------KMLPDMVVGDVVKQVNSKPEQHFTQP 441
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
PARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+ + Y
Sbjct: 442 PARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKLIVEY 501
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+ +EK
Sbjct: 502 FPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEEMEKI 553
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
A C VCG ++ K+ RFG F C+ P C +
Sbjct: 554 QIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 592
>gi|290580546|ref|YP_003484938.1| DNA topoisomerase I [Streptococcus mutans NN2025]
gi|450067226|ref|ZP_21846480.1| DNA topoisomerase I [Streptococcus mutans NLML9]
gi|254997445|dbj|BAH88046.1| putative DNA topoisomerase I [Streptococcus mutans NN2025]
gi|449208162|gb|EMC08779.1| DNA topoisomerase I [Streptococcus mutans NLML9]
Length = 705
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 248/651 (38%), Positives = 367/651 (56%), Gaps = 57/651 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D+++ +
Sbjct: 21 KNLVIVESPAKAKTIEKYLGRSYKVVASVGHIRDLKKSSMSIDFDNNYEPQYINIRGKGP 80
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ S+K A+ + LASDPDREGEAI+WH+ +L D +N RVVF+EIT+ +
Sbjct: 81 LINSLKKEAKNAKQIFLASDPDREGEAISWHLAHILDL-DLKGKN----RVVFNEITKDA 135
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A R+ID +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI D
Sbjct: 136 VKNAFVDPRQIDMDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIID 195
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI FKP+EYW+++ K F A+ +K+ + S+ + K +
Sbjct: 196 RENEIKAFKPEEYWSIDGFFKKGNK------KFQANFYGLDNKKT---KLKSNDDVKKVL 246
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I + +F V K K+ R P PY TS+LQQDAANK+NF TM +AQ+LYEG++L
Sbjct: 247 TRIKNDDFLVDKVEKKERKRNAPLPYTTSSLQQDAANKINFRTRKTMMVAQQLYEGIRLG 306
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA---QEA 706
GLITYMRTD IS A + + I E +G+ ++ K+ V+NA Q+A
Sbjct: 307 SNGQQGLITYMRTDSTRISPVAQNDAANYITEHFGAEYS------KHGNHVRNASGAQDA 360
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP+++ P ++ LD+D LKLY+LIW+R +A QM A ++V++ S++
Sbjct: 361 HEAIRPSNVNHTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTVKVNL--TQNSVL 418
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
F ++ S+++F G+ A Y D D + L + G+ + +Q
Sbjct: 419 FIANGSQIKFKGYMAVYNDSDKTKV----------------LPEMIKGEIVKKISANPEQ 462
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARYSE SL+K LEE G+GRPSTYA TL+ +Q R YV + S+ P G +V++
Sbjct: 463 HFTQPPARYSEASLIKTLEENGVGRPSTYAPTLETIQKRYYVRLVSKRFEPTELGEIVNS 522
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ +F ++ D FTA+ME++LD V G EW+ ++ ++ F A+ Q+EK
Sbjct: 523 LIIEFFPDIVDVKFTAEMESKLDEVEVGKEEWQKVIDQFYKPFEKEVVKAE----EQMEK 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
+ K C VCG ++ K+ R+G F C+ P C+
Sbjct: 579 IQIKDEPAGF---------DCDVCGH-PMVIKLGRYGK--FYACSNFPDCH 617
>gi|304316915|ref|YP_003852060.1| DNA topoisomerase I [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302778417|gb|ADL68976.1| DNA topoisomerase I [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
Length = 686
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 255/653 (39%), Positives = 369/653 (56%), Gaps = 56/653 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
KS+V+VES +KAK I YLG Y+V S GH+RDL + + +F +
Sbjct: 3 KSLVIVESPSKAKTIHKYLGKNYKVEASMGHIRDLPKSQLGIDIEKNFEPKYITIRGKGP 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV---ARVVFHEIT 466
++ +K A + LA+DPDREGEAI+WH+ +L NI V R+ FHEIT
Sbjct: 63 IIEKLKKEAKNASKIYLATDPDREGEAISWHLANLL--------NIDVNDKCRIEFHEIT 114
Query: 467 EASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSL 526
+ +I+ A++ R+I+ NLV A ARR LD L+G+NISPLLW+K+ SAGRVQS A L
Sbjct: 115 KNAIQNAIKNPRKINMNLVDAQQARRILDRLVGYNISPLLWKKIKRGLSAGRVQSVATRL 174
Query: 527 ICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAK 586
ICDRE EI+EFKP+EYW++ A L K++ T F A F + ++ + + +
Sbjct: 175 ICDREKEIEEFKPEEYWSLSAFLYKEKK----TQYFEA---KFYGTKDGKIDLKNENDVN 227
Query: 587 DIEQKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
+I + + A+ ++ N K ++NP+ P+ITST+QQ+A+ KL F+A TM +AQ+LYEG
Sbjct: 228 NIIKDL--ADDYIVDNVKTGTKKRNPSPPFITSTMQQEASKKLGFTAKKTMMIAQQLYEG 285
Query: 646 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPR-KYFKKVKNAQ 704
V++ + GLITYMRTD IS+EA K I ++YG +A P Y KK N Q
Sbjct: 286 VEIKGEGSLGLITYMRTDSTRISEEAKKAAYEYILQKYGKEYA---NPNTTYTKKGGNIQ 342
Query: 705 EAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES 764
+AHEAIRPT I P + L D KLY LIWSR +A QM A I +DI N ++
Sbjct: 343 DAHEAIRPTYINLDPDQIKDSLKPDQYKLYKLIWSRFLASQMSQALYDTITMDIIN--KN 400
Query: 765 IVFRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVE 823
+F++S S+++F GF Y E+ D I K L L+ GD L L ++
Sbjct: 401 YIFKASGSKLKFAGFMTVYIEEADTENIEEK------------TLPLLEKGDHLKLKVLK 448
Query: 824 LKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRM 883
+QH TQPPARY+E +L+K+LEE GIGRPSTYA + L +R YV + + L P G +
Sbjct: 449 PEQHFTQPPARYTEATLIKELEEKGIGRPSTYAPIISTLLERGYVIKEKKNLKPTELGFI 508
Query: 884 VSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQ 943
V+ + +F ++ D FTA+ME +LD + G+ +W ++ +++ F+ A+
Sbjct: 509 VTDVMKEFFPDIVDVKFTAEMEEQLDKIEEGIEKWCDVIDGFYNNFNDSLKVAE------ 562
Query: 944 VEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E+M + D + D C CG ++ K R+G F+ C P C
Sbjct: 563 -EQMKDIEIKDEV------TDIKCEFCGR-NMVIKYGRYGK--FLACPGFPEC 605
>gi|16800382|ref|NP_470650.1| DNA topoisomerase I [Listeria innocua Clip11262]
gi|422415770|ref|ZP_16492727.1| DNA topoisomerase I [Listeria innocua FSL J1-023]
gi|423100355|ref|ZP_17088062.1| DNA topoisomerase I [Listeria innocua ATCC 33091]
gi|16413787|emb|CAC96545.1| topA [Listeria innocua Clip11262]
gi|313623981|gb|EFR94080.1| DNA topoisomerase I [Listeria innocua FSL J1-023]
gi|370793356|gb|EHN61194.1| DNA topoisomerase I [Listeria innocua ATCC 33091]
Length = 692
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/647 (39%), Positives = 360/647 (55%), Gaps = 48/647 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++V S GHVRDL V + D+ + L
Sbjct: 5 LVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTEHDYEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ--QQDALHENITVARVVFHEITEAS 469
K +K A A+ + LA+DPDREGEAIAWH+ L Q D L RVVF+EIT+ +
Sbjct: 65 KDLKQAAKKAKKVYLAADPDREGEAIAWHLANSLDLDQSDKL-------RVVFNEITKEA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K + + R+ID +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL +I D
Sbjct: 118 VKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIID 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FKP+EYWT++ K + F A+ K+ + + + K++
Sbjct: 178 REKEINNFKPEEYWTIDGNFLKGKK------KFQANFYGVNGKKR---KLSTADDVKEVM 228
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I F V +K+ +R P+ TS+LQQ+AA KLN+ TM LAQ+LYEG+ L
Sbjct: 229 SAIKGKTFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLG 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E + I E YG+ + ++ K K AQ+AHEA
Sbjct: 289 KQGTVGLITYMRTDSTRIADSAILEASNYIKETYGAEFS--RNHKRSDKNAKGAQDAHEA 346
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R P + L D L+LY LIW R +A QM PA + ++VD+ N + FR+
Sbjct: 347 IRPTSAMRSPQEVKEYLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDN--NGVNFRA 404
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+++F GF Y + + KEN IL LK GD + +E +QH T
Sbjct: 405 NGSKIKFHGFMKVYVESNDDNTEEKEN----------ILPDLKKGDKVQSESLEQRQHFT 454
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LVK LEE+GIGRPSTY+ TL +Q RNYV++ ++ P G +V+ +
Sbjct: 455 QPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFVPTELGEIVNEMIE 514
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF E+ D FTA+ME+ELD V G EW ++ +++ +F A + + ++E E
Sbjct: 515 EYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKQFEPNVIKADA-EMEKIEIKDE 573
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C +CG +++K+ ++G F+ C++ P C
Sbjct: 574 PAGID------------CDLCG-APMVYKMGKYGK--FLACSRFPDC 605
>gi|419823887|ref|ZP_14347420.1| DNA topoisomerase I [Bacillus atrophaeus C89]
gi|388471924|gb|EIM08714.1| DNA topoisomerase I [Bacillus atrophaeus C89]
Length = 691
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 267/678 (39%), Positives = 373/678 (55%), Gaps = 60/678 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV-ARVVFHEITEASI 470
K +K A A+ + LA+DPDREGEAIAWH+ +L ++T RVVF+EIT+ +I
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAH------SLDLDLTSDCRVVFNEITKDAI 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 119 KESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+EFKP+EYWT++ K + +TF F K +L + S + K+I
Sbjct: 179 EKEINEFKPEEYWTIDGSFLKGQ----ETFE-----ASFFGKGGKKLPLKSEADVKEILS 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 QLKGNKYTVEKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS+ A +E + I + YG G RK KK +NAQ+AHEAI
Sbjct: 290 EGTVGLITYMRTDSTRISNTAVEEAAAFIDQTYGKEFLG--GKRKPAKKNENAQDAHEAI 347
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT I R P L +L D L+LY LIW R +A QM A + + VD+ N + FR++
Sbjct: 348 RPTSILRKPNELKTVLGRDQLRLYKLIWERFVASQMASAVLDTMSVDLEN--NGLTFRAT 405
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+V+F GF Y + + EE DR +L L+ GD + ++E +QH TQ
Sbjct: 406 GSKVKFSGFMKVYVEGKDDQL-----EEKDR-----MLPDLQEGDTVLSKDIEPEQHFTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G++V +
Sbjct: 456 PPPRYTEARLVKTLEELGIGRPSTYAPTLDTIQRRGYVGLDNKRFVPTELGQIVLELIME 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F E+ + FTA ME +LDNV G TEW ++ +++ F A++ + +VE E
Sbjct: 516 FFPEIINVEFTARMEQDLDNVEDGNTEWVQIIDRFYTDFEKRVKKAEA-EMKEVEIEPEY 574
Query: 951 TFGDSLFASLPNKDR----------------------------SCPVCGEGTLIFKVSRF 982
D S P + CP C EG ++ + S+
Sbjct: 575 AGEDCELCSSPMVYKMGRYGKFLACSNFPDCRNTKPIVKQIGVKCPKCEEGNIVERKSK- 633
Query: 983 GAGYFIGCNQHPRCNYIA 1000
F GC+++P+C++++
Sbjct: 634 KKRVFYGCDRYPQCDFVS 651
>gi|325295142|ref|YP_004281656.1| DNA topoisomerase I [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065590|gb|ADY73597.1| DNA topoisomerase I [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 699
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 260/686 (37%), Positives = 361/686 (52%), Gaps = 63/686 (9%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK IQ YLG + V S GHV DL + V + DF +
Sbjct: 4 KKLLIVESPAKAKTIQRYLGKDFIVKASMGHVIDLPEKEFGVDIEKDFKPKYVTIKGKDK 63
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
LK I+ A +E ++LA+DPDREGEAI+WHI L++ + + RV FHEIT+ +
Sbjct: 64 VLKEIRKAAKESEEVLLATDPDREGEAISWHIANALKR----IKKEGIYRVRFHEITKKA 119
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A++ +ID N V A ARR LD ++G+ ISPLL +K SAGRVQS AL LICD
Sbjct: 120 IEEAIKNPDKIDENKVNAQQARRILDRIVGYTISPLLSKKFKKALSAGRVQSVALRLICD 179
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI +F P+EYWTVE + K +T FPA L K+L++ I A +
Sbjct: 180 REEEIRKFVPKEYWTVEGIFRK------ETSKFPAKLFAVDGKKLDKFDIPDKNSANQLI 233
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A F V + ++ RK P+ITSTLQQ+A+ + F A TM++AQ+LYEG+ L
Sbjct: 234 DRAKKAVFVVTRVERKERKRKPYPPFITSTLQQEASKRFGFPAKLTMQIAQQLYEGIDL- 292
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD +SDEA KE+R+ I E +G + P+ K K+AQ+AHEA
Sbjct: 293 GKERVGLITYMRTDSTRVSDEAVKEVRNFIEENFGLEYLPKTKRSYETKTPKSAQDAHEA 352
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDI-GNADESIVFR 768
IRPT + R P + L + KLY LIW R +A QM+ A + DI GN ++FR
Sbjct: 353 IRPTSVFRTPESVKKYLTSEQYKLYELIWKRFVASQMKDAVFNTVSADIEGNG---LLFR 409
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S ++ GF Y + ++E +L L GD + +++ QH
Sbjct: 410 ATGSTLKEEGFLKVY------PVEFEEK----------LLPDLNEGDKVEQEDIKGIQHF 453
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP RY+EG+LVK LEE G+GRPSTYA+ + + R YV + + L P G ++ L
Sbjct: 454 TEPPPRYTEGTLVKALEEEGVGRPSTYATIISNIIQRGYVEKEKQKLKPTELGEFINDIL 513
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVD-YWSRFSSYCTCAQS--------- 938
F ++ D FTA++E ELD + G EW LL + Y+ F A+
Sbjct: 514 KKLFPKIVDVKFTANIEEELDKIEEGKKEWIELLKEFYFGEFKELLEKAERELKSLKGEE 573
Query: 939 ------------LHIH-------QVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKV 979
L IH K E + +SL CP CG G L+ K
Sbjct: 574 IGRECPKCGAPLLKIHGKYGTFIACSKYPECKYKESLKGEPKKTGEICPKCG-GELVIKN 632
Query: 980 SRFGAGYFIGCNQHPRCNYIAKTLYG 1005
++G FI C +P+C Y A YG
Sbjct: 633 GKYGK--FIACANYPKCKYTAPLTYG 656
>gi|225870568|ref|YP_002746515.1| DNA topoisomerase I [Streptococcus equi subsp. equi 4047]
gi|225699972|emb|CAW93942.1| DNA topoisomerase I [Streptococcus equi subsp. equi 4047]
Length = 710
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 249/652 (38%), Positives = 371/652 (56%), Gaps = 59/652 (9%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D+ + +
Sbjct: 28 NLVIVESPAKAKTIEKYLGRQYKVVASVGHIRDLKKSSMSIDFDNHYEPQYINIRGKGPL 87
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ ++K A+ + LASDPDREGEAI+WH+ +L D N RVVF+EIT+ ++
Sbjct: 88 INALKKEAKNAKKVYLASDPDREGEAISWHLSHILGL-DPDDNN----RVVFNEITKDAV 142
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV + ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 143 KEAFEGPRKIDMDLVDSQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 202
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F P+EYW+++ + K T F A K++ + ++ + K +
Sbjct: 203 EHEIKAFVPEEYWSIDGLFKK------GTKKFQASFYGLNGKKM---KLNTNDDVKLVLS 253
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL-P 649
+++S +F V K K+ R P PY TS+LQQDAANK+NF TM +AQ+LYEG+ L P
Sbjct: 254 RLSSDDFMVSKVEKKERRRHAPLPYTTSSLQQDAANKINFRTRKTMMVAQQLYEGISLGP 313
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA---QEA 706
+GT GLITYMRTD IS A + I ER+GS ++ K+ +VKNA Q+A
Sbjct: 314 NGTQ-GLITYMRTDSTRISPVAQNDAAGFIVERFGSQYS------KHGNRVKNATGAQDA 366
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP+++ P ++ LD+D LKLY+LIW+R +A QM A ++V++ S++
Sbjct: 367 HEAIRPSNVNHTPEAIAKFLDKDQLKLYTLIWNRFVASQMTAAVFDTVKVNL--EQNSVL 424
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
F ++ S+++F G+ A Y D D + L + G+ + + +Q
Sbjct: 425 FVANGSQMKFDGYMAVYNDSDKSKM----------------LPEMTEGEVVKKVTLTPEQ 468
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARYSE SL+K LEE G+GRPSTYA TL V+Q R YV + ++ P G +V+
Sbjct: 469 HFTQPPARYSEASLIKTLEENGVGRPSTYAPTLDVIQRRYYVKLAAKRFEPTELGEIVNQ 528
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ +F ++ D FTADME +LD + G W+ ++ ++ F T A++ ++EK
Sbjct: 529 LIVEFFPDIVDVKFTADMEDKLDQIEIGKEAWQNVIDQFYKPFVKELTKAET----EIEK 584
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+ K C +CG ++ K+ RFG F C+ P C++
Sbjct: 585 IQIKDEPAGF---------DCELCGH-PMVVKLGRFGK--FYACSNFPECHH 624
>gi|417934263|ref|ZP_12577583.1| DNA topoisomerase I [Streptococcus mitis bv. 2 str. F0392]
gi|340770833|gb|EGR93348.1| DNA topoisomerase I [Streptococcus mitis bv. 2 str. F0392]
Length = 695
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/651 (38%), Positives = 367/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDENDD-NRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ + + ++ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGMNGKK---MKLTTNEEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F V + K+ R P PY TST+Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 HLTSKDFTVDQVDKKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASYINDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTGAIFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS A+S ++EK+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDAFYKPFSKEVAKAES----EMEKI 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
K C VCG ++ K+ RFG F C+ P C +
Sbjct: 572 QIKDEPAGF---------DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|294500948|ref|YP_003564648.1| DNA topoisomerase I [Bacillus megaterium QM B1551]
gi|384045200|ref|YP_005493217.1| DNA topoisomerase I [Bacillus megaterium WSH-002]
gi|294350885|gb|ADE71214.1| DNA topoisomerase I [Bacillus megaterium QM B1551]
gi|345442891|gb|AEN87908.1| DNA topoisomerase I [Bacillus megaterium WSH-002]
Length = 691
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 255/645 (39%), Positives = 356/645 (55%), Gaps = 44/645 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL + + D++ + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGIDIEQDYNPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L A + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKIYLAADPDREGEAIAWHLAHSLDVDIA-----SDCRVVFNEITKEAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+NISPLLW+K+ SAGRVQS A+ LI DRE
Sbjct: 120 ESFKHPRAINMDLVDAQQARRILDRLVGYNISPLLWKKVKKGLSAGRVQSIAVRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI +F P+EYWTV+A K F L +Q K++ + + + +I ++
Sbjct: 180 KEIAKFIPEEYWTVKATFQKGNDQ------FEGQLIEYQGKKV---ELSNENDVTNIVKQ 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
++ F + K +KR R + TS+LQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LDGNEFSISKVTKRERKRNAAPSFTTSSLQQEAARKLNFRAKKTMMIAQQLYEGIDLGKE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A E R I YG+ E ++ KK NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISETAQTEARDYITNAYGNQFVATEKRKE--KKNSNAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT R P + L D +LY L+W R +A QM PA + + VD+ N D + FR++
Sbjct: 349 PTSALRKPGEVKEFLSRDQYRLYKLVWERFVASQMAPAIMDTMAVDLKNGD--VTFRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y + + + KEN +L L+ G+ Y +++ KQH TQP
Sbjct: 407 SKVKFPGFMKVYVEGNDDQVEEKEN----------LLPDLEEGEVAYSKDIDEKQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G +V + +
Sbjct: 457 PPRYTEARLVKTLEELGIGRPSTYAPTLDTIQKRGYVALDNKRFVPTELGEIVLELVLEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ D FTA ME +LD V G +W ++ +++S F A+ + +VE E
Sbjct: 517 FPEILDVEFTAKMENDLDEVEDGNVQWVRVIDEFYSDFEKRLEHAEK-EMREVEIKDEPA 575
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C CG +++K+ R+G F+ C+ P C
Sbjct: 576 GED------------CEECG-SPMVYKMGRYGK--FMACSNFPDC 605
>gi|228476749|ref|ZP_04061415.1| DNA topoisomerase I [Streptococcus salivarius SK126]
gi|228251620|gb|EEK10721.1| DNA topoisomerase I [Streptococcus salivarius SK126]
Length = 714
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 250/652 (38%), Positives = 366/652 (56%), Gaps = 62/652 (9%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ ++++ +
Sbjct: 32 NLVIVESPAKAKTIEKYLGRNYKVVASVGHIRDLKKSSMSIDFENNYEPQYINIRGKGPL 91
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEML--QQQDALHENITVARVVFHEITEA 468
+ +K A+ + LASDPDREGEAI+WH+ +L + +D RVVF+EIT+
Sbjct: 92 INDLKKEAKKAKQVFLASDPDREGEAISWHLSHILGLEPEDK-------NRVVFNEITKD 144
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K A R ID +LV A ARR LD ++G++ISPLLW+K+ SAGRVQS AL LI
Sbjct: 145 AVKNAFVEPRAIDMDLVDAQQARRVLDRIVGYSISPLLWKKVKKGLSAGRVQSVALKLII 204
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI FKP+EYWT++ K F A K+ L + ++ + KD+
Sbjct: 205 DRENEIKAFKPEEYWTIDGAFKKGAK------KFQASFYGLDGKK---LKLNNNDDVKDV 255
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+I S +F V K K+ R P PY TS+LQQDAANK+NF TM +AQ+LYEG+ L
Sbjct: 256 LSRITSDDFNVDKVEKKERRRNAPLPYTTSSLQQDAANKINFRTRKTMMVAQQLYEGINL 315
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQE 705
G A GLITYMRTD IS A + I ER+GS ++ K+ KVKN AQ+
Sbjct: 316 GSG-AQGLITYMRTDSTRISPVAQNQAAEFITERFGSKYS------KHGSKVKNSSAAQD 368
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEAIRP+++ + P ++ LD+D LKLY+LIW+R +A QM A ++V + + +
Sbjct: 369 AHEAIRPSNVFQTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMKVTL--SQNGV 426
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
+F ++ S+++F G+ A Y D D +L + GD + +
Sbjct: 427 IFTANGSQIKFDGYMAVYNDSDKN----------------KMLPDMAEGDTVKKVVTTPE 470
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH TQPPARYSE +L+K LEE G+GRPSTYA TL V+Q R YV + ++ P G +V+
Sbjct: 471 QHFTQPPARYSEATLIKTLEENGVGRPSTYAPTLDVIQRRYYVKLVAKRFEPTELGEIVN 530
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
+ + +F ++ D FTA+ME +LD V G +W+ ++ +++ F + + E
Sbjct: 531 SLIVEFFPDIVDVKFTAEMEGKLDKVEIGKEQWQKVIDEFFKPFQK--------ELEKAE 582
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
+ +EK A C +CG ++ K+ R+G F C+ P C+
Sbjct: 583 EGIEKIQIKDEPAGF-----DCDLCGH-PMVIKLGRYGK--FYACSNFPDCH 626
>gi|332638609|ref|ZP_08417472.1| DNA topoisomerase I [Weissella cibaria KACC 11862]
Length = 709
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 260/684 (38%), Positives = 385/684 (56%), Gaps = 72/684 (10%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES +KAK I+ YLG Y+V+ S GH+RDL + V ++D++ +
Sbjct: 30 NLVIVESPSKAKTIEKYLGSTYKVVASIGHIRDLPKSTMGVDIENDYAPKYINIRGKGDV 89
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+++ LASDPDREGEAIAWH+ +L EN RVVF+EIT+ ++
Sbjct: 90 IKGLKKDAKAAKHVYLASDPDREGEAIAWHLSHILDLDLESGEN----RVVFNEITKDAV 145
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL L+ R
Sbjct: 146 KDAFKQPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSVALGLVIAR 205
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F+P EYWT+++ K D +F A K+L + + +DI +
Sbjct: 206 ENEIQAFQPDEYWTMDSEFKK------DKTTFKATFYGVDGKKL---ELPDNEAVQDILR 256
Query: 591 KINS-ANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
++N ++F + K + ++NP P + TSTLQQ A +LNF TM AQ+LYEG+ L
Sbjct: 257 RLNQKSDFDITKVEAKER-KRNPQPAFTTSTLQQTANTQLNFRTRKTMMAAQQLYEGINL 315
Query: 649 --PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHA---PEEGPRKYFKKVKNA 703
+G+ GLITYMRTD IS+ A + + I E YG+ +A P +G K+ + A
Sbjct: 316 GGKEGSV-GLITYMRTDSTRISEIAKADASTFIHEEYGAEYAATKPVQG-----KQQEGA 369
Query: 704 QEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADE 763
Q+AHEAIRPT + R PA + L D KLY LIWSR +A QM P + + V I
Sbjct: 370 QDAHEAIRPTSVFRTPASIKDKLTNDQFKLYQLIWSRFVASQMTPEILDTMAVTI--EQN 427
Query: 764 SIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVE 823
++FR++ S+ +F GF AY A + K+N+ L +L GD + L ++
Sbjct: 428 GVMFRANGSKTKFAGFTKAYP-----AAKEKDNK----------LPTLTVGDLVQLAKMS 472
Query: 824 LKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRM 883
+QH TQPPARY+E +LVK LEE G+GRPSTYA+T++ +Q R YV + ++ P G +
Sbjct: 473 PEQHFTQPPARYTEAALVKALEENGVGRPSTYAATIETIQKRGYVRIDAKKFVPTELGEL 532
Query: 884 VSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQ 943
V + +F +VT+ FTA++ET LDNV AG W ++ D++ FS T A++
Sbjct: 533 VQNTVQEFFPDVTNIKFTAEVETSLDNVEAGKENWVKVIDDFFKPFSKELTKAETEMEKI 592
Query: 944 VEK--------------MLEKT------FGDSLFASLPNKDR-------SCPVCGEGTLI 976
V K MLEK + S F N CP CG G ++
Sbjct: 593 VLKDRLAGFNCDVCGAPMLEKMGRYGKFYACSRFPDCRNTQTIVEEIGLGCPKCGIGQIV 652
Query: 977 FKVSRFGAGYFIGCNQHPRCNYIA 1000
+ ++ G ++ GC+++P C++++
Sbjct: 653 ERKTKRGRTFY-GCSRYPDCDFVS 675
>gi|73662827|ref|YP_301608.1| DNA topoisomerase I [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|123642435|sp|Q49X35.1|TOP1_STAS1 RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|72495342|dbj|BAE18663.1| DNA topoisomerase IA [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 688
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 252/648 (38%), Positives = 357/648 (55%), Gaps = 47/648 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
+++V+VES KAK I+ YLG Y+V+ S GHVRDL V ++D+ +
Sbjct: 2 AENLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDAENDYEPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+K +K A+ + LASDPDREGEAIAWH+ +L +D+ T RVVF+EIT+
Sbjct: 62 PVVKELKKHAKKAKKVFLASDPDREGEAIAWHLANILNLEDS-----TENRVVFNEITKD 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K + + R I+ LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+
Sbjct: 117 AVKDSFKHPRGIEMELVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVI 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI FKP+EYW +E K++ F A HF++K + + + I
Sbjct: 177 DRENEIRNFKPEEYWKIEGEFRYKKT------KFTAKFLHFKNK---PFKLTEKADVEKI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ F+V K +K+ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 228 TTQLDGDQFEVTKVTKKEKTRYPANPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDL 287
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
GLITYMRTD ISD+A E ++ I E YG+ + RK K + Q+AHE
Sbjct: 288 KKQGTVGLITYMRTDSTRISDQAQSEAKNYIQETYGNDYTSN---RK--SKGQGDQDAHE 342
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRP+ R P + L D +LY LIW R +A QM PA + + +D+ D I FR
Sbjct: 343 AIRPSSTLRTPNEMKNFLTRDQHRLYKLIWERFVASQMAPAILDTVAMDLTQND--IKFR 400
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ ++F GF Y + K++ E+ + L ++ G+ + +E QH
Sbjct: 401 ANGQTIKFKGFMTLY-------VETKDDSEDGKDNK---LPNIGEGEMVTATNIEPSQHF 450
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RY+E LVK +EEL IGRPSTYA T+ +Q RNYV +S+ P G +V +
Sbjct: 451 TQPPPRYTEARLVKTMEELKIGRPSTYAPTIDTIQKRNYVKNESKRFVPTELGEIVHEQV 510
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
YF E+ D FT +MET LD V+ G WK ++ D++S F VE+
Sbjct: 511 KDYFPEIIDVDFTVNMETLLDKVADGEIGWKKVISDFYSSFK-----------QDVERAE 559
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E+ + +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 560 EEMEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 602
>gi|410456950|ref|ZP_11310797.1| DNA topoisomerase I [Bacillus bataviensis LMG 21833]
gi|409926924|gb|EKN64075.1| DNA topoisomerase I [Bacillus bataviensis LMG 21833]
Length = 693
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 256/646 (39%), Positives = 357/646 (55%), Gaps = 45/646 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG+ Y+V S GHVRDL V ++ F + L
Sbjct: 6 LVIVESPAKAKTIERYLGNKYKVKASMGHVRDLPRSQMGVNVENSFEPKYITIRGKGPVL 65
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV-ARVVFHEITEASI 470
K +K A + + LA+DPDREGEAIAWH+ +L +IT RVVF+EIT+ +I
Sbjct: 66 KELKTAAKKVKKIYLAADPDREGEAIAWHLAH------SLDVDITSDCRVVFNEITKDAI 119
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISPLLW+K+ SAGRVQS A+ LI DR
Sbjct: 120 KESFKHPRPINMDLVDAQQARRILDRLVGYNISPLLWKKVKKGLSAGRVQSVAVRLIIDR 179
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F P+EYWT++ K H + S+ + + H + + S + + I Q
Sbjct: 180 EKEIKAFTPEEYWTIDGEFLKGNDHF--SGSYHSLVGH------EKTELKSEQDVQAILQ 231
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F+VI +K+ R P+ITS+LQQ+AA KLNF A TM LAQ+LYEG++L
Sbjct: 232 QLTDNKFKVISVTKKERRRNPAPPFITSSLQQEAARKLNFRARKTMMLAQQLYEGIELGK 291
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS+ A E I YG + ++ ++ KK NAQ+AHEAI
Sbjct: 292 EGTVGLITYMRTDSTRISEVAQAEAAGYIKAEYGENFLKDDQRKE--KKQTNAQDAHEAI 349
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P L L D L+LY LIW R +A QM A + + VD+ N + ++FR++
Sbjct: 350 RPTSTLREPGSLKEFLSRDQLRLYKLIWERFLASQMAQAVMDTMSVDLQNGN--VLFRAT 407
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+++F GF Y + I E +L LK GD ++ ++E KQH TQ
Sbjct: 408 GSKIKFPGFMKLYVEGSDDQIDGPEK----------MLPDLKEGDEVFKKDIEPKQHFTQ 457
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEELGIGRPSTYA TL +Q R YV + ++ P G +V +
Sbjct: 458 PPPRYTEARLVKTLEELGIGRPSTYAPTLDTVQKRGYVALDNKRFIPTELGEIVHEVMVE 517
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F E+ + FTA ME LD + G W L+ ++ F + A+ ++EK+
Sbjct: 518 FFPEIINVEFTARMEKGLDYIEDGKMTWIKLIDAFYQEFETNLKIAE----QEMEKI--- 570
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
A P + C CG ++FK+ R+G F+ C+ P C
Sbjct: 571 -----EIADEPAGE-DCENCG-NPMVFKMGRYGK--FMACSNFPDC 607
>gi|418576366|ref|ZP_13140512.1| DNA topoisomerase I [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|379325428|gb|EHY92560.1| DNA topoisomerase I [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 688
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 252/648 (38%), Positives = 357/648 (55%), Gaps = 47/648 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
+++V+VES KAK I+ YLG Y+V+ S GHVRDL V ++D+ +
Sbjct: 2 AENLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDAENDYEPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+K +K A+ + LASDPDREGEAIAWH+ +L +D+ T RVVF+EIT+
Sbjct: 62 PVVKELKKHAKKAKKVFLASDPDREGEAIAWHLANILNLEDS-----TENRVVFNEITKD 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K + + R I+ LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+
Sbjct: 117 AVKDSFKHPRGIEMELVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVI 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI FKP+EYW +E K++ F A HF++K + + + I
Sbjct: 177 DRENEIRNFKPEEYWKIEGEFRYKKT------KFTAKFLHFKNK---PFKLTEKADVEKI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ F+V K +K+ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 228 TTQLDGDQFEVTKVTKKEKTRYPANPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDL 287
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
GLITYMRTD ISD+A E ++ I E YG+ + RK K + Q+AHE
Sbjct: 288 KKQGTVGLITYMRTDSTRISDQAKSEAKNYIQETYGNDYTSN---RK--SKGQGDQDAHE 342
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRP+ R P + L D +LY LIW R +A QM PA + + +D+ D I FR
Sbjct: 343 AIRPSSTLRTPNEMKNFLTRDQHRLYKLIWERFVASQMAPAILDTVAMDLTQND--IKFR 400
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ ++F GF Y + K++ E+ + L ++ G+ + +E QH
Sbjct: 401 ANGQTIKFKGFMTLY-------VETKDDSEDGKDNK---LPNIGEGEMVTATNIEPSQHF 450
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RY+E LVK +EEL IGRPSTYA T+ +Q RNYV +S+ P G +V +
Sbjct: 451 TQPPPRYTEARLVKTMEELKIGRPSTYAPTIDTIQKRNYVKNESKRFVPTELGEIVHEQV 510
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
YF E+ D FT +MET LD V+ G WK ++ D++S F VE+
Sbjct: 511 KDYFPEIIDVDFTVNMETLLDKVADGEIGWKKVISDFYSSFK-----------QDVERAE 559
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E+ + +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 560 EEMEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 602
>gi|306829632|ref|ZP_07462822.1| DNA topoisomerase TopA [Streptococcus mitis ATCC 6249]
gi|304428718|gb|EFM31808.1| DNA topoisomerase TopA [Streptococcus mitis ATCC 6249]
Length = 695
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 252/651 (38%), Positives = 368/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILD----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ + + ++ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGMNGKK---MKLTTNEEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F V + K+ R P PY TST+Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 HLTSKDFTVDQVDKKERKRNAPLPYTTSTMQMDAANKINFRTRKTMMVAQQLYEGINIGT 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASYINDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTGAIFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQINSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ +++ FS A++ ++EK+
Sbjct: 516 IVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDEFYKPFSKDVAKAEA----EMEKI 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
K C VCG ++ K+ RFG F C+ P C +
Sbjct: 572 QIKDEPAGF---------DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|329768845|ref|ZP_08260273.1| DNA topoisomerase I [Gemella sanguinis M325]
gi|328837208|gb|EGF86845.1| DNA topoisomerase I [Gemella sanguinis M325]
Length = 683
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 262/689 (38%), Positives = 372/689 (53%), Gaps = 67/689 (9%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPS--A 406
+++V+VES +KAK I+ YLG Y+V+ S GHVRDL V D+ ++ + S
Sbjct: 2 AENLVIVESPSKAKTIEKYLGKKYKVISSKGHVRDLPKSRMGVEVQDNGNIGVDYISIRG 61
Query: 407 AWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEIT 466
+KS+K G + + LASDPDREGEAIAWHI +L L+ N V RVVF+EIT
Sbjct: 62 KGDVIKSLKKEAKG-KKVFLASDPDREGEAIAWHIAHIL----GLNSN-DVNRVVFNEIT 115
Query: 467 EASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSL 526
+ ++K A++ R+I+ +LVQ+ ARR LD L+G+NISP+LW+K+ SAGRVQ+AAL L
Sbjct: 116 KDAVKDAIKHPRKINTDLVQSQQARRILDRLVGYNISPVLWKKVKPKLSAGRVQNAALKL 175
Query: 527 ICDREMEIDEFKPQEYWTVE-AVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEA 585
I DRE EI F PQEYWT+ + ++ + + +SF +SK+ +
Sbjct: 176 IVDREEEIQNFIPQEYWTLPIGFIKNRKILTANFYSFKGEKIKLESKK----------DV 225
Query: 586 KDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 645
I++ I F+VI K R P YITSTLQQDA+ K+NF TM +AQ+LYEG
Sbjct: 226 DKIKKAIKGETFKVIDVVKSKKNRNAPNVYITSTLQQDASRKINFKTRKTMSVAQELYEG 285
Query: 646 VQLPD-GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQ 704
+ L G GLITYMRTD +SDEA K I + YG + K K KN Q
Sbjct: 286 INLKKLGGVTGLITYMRTDSTRVSDEAEKMASEFITKNYGKEYLATSVSSK--KSNKNIQ 343
Query: 705 EAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES 764
+AHE IRPT+I P + L D KLY LIW R +A +M PA I N
Sbjct: 344 DAHEGIRPTNIDFTPDSIKEYLSNDQYKLYKLIWERFVASRMSPAVYETISTTFEN--NK 401
Query: 765 IVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVEL 824
+V+R + S++ F GF ++ E + + G+ + ++
Sbjct: 402 VVYRGAESKLLFNGFLTVLKE----------------KEKIKSVPEFEVGEDAKIKSIDE 445
Query: 825 KQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMV 884
+QH TQPPARYSE L+ +LE+LGIGRPSTYA+ + LQ R Y +++++ P G +V
Sbjct: 446 EQHFTQPPARYSEAKLIAELEDLGIGRPSTYATIVDTLQKRYYAKLQNKVFTPTELGTLV 505
Query: 885 SAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQV 944
S YF +V + FTA +E +LD+++ G EW+ + D++S F A+S + ++
Sbjct: 506 SKITEEYFPDVINTKFTASLENQLDDIAEGKAEWEKTIYDFYSGFRKDVEKAES-EMEKI 564
Query: 945 EKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLY 1004
E E T GD +CP CG L++K+ +FG FI C+ P C Y
Sbjct: 565 EIKQELT-GD-----------NCPECG-SPLVYKLGKFGK--FIACSNFPECRYT----- 604
Query: 1005 GDDDEEDTLQRNTNVDEPKLIGHHPASKE 1033
+T+Q+ V PK H K+
Sbjct: 605 ------NTIQKKVGVTCPKCHKHDVLEKK 627
>gi|322389591|ref|ZP_08063140.1| DNA topoisomerase TopA [Streptococcus parasanguinis ATCC 903]
gi|321143717|gb|EFX39146.1| DNA topoisomerase TopA [Streptococcus parasanguinis ATCC 903]
Length = 693
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 246/651 (37%), Positives = 369/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GH+RDL + S+ D+++ +
Sbjct: 13 NLVIVESPAKAKTIEKYLGRNYKVMASVGHIRDLKKSTMSINFDNNYEPEYINIRGKGPL 72
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A+ + LASDPDREGEAI+WH+ +L DA +N RVVF+EIT+ ++
Sbjct: 73 INDLKKEAKKAKQVFLASDPDREGEAISWHLAHILNL-DANEKN----RVVFNEITKDAV 127
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 128 KNAFKEPRQIDMDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 187
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI++FKP+EYWT++ V K T F A K+ + + ++ E K + +
Sbjct: 188 ENEINDFKPEEYWTIDGVFKK------GTKQFQASFYGIDGKK---MKLNTNEEVKAVLE 238
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+++ +F V K K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 239 RLDGKDFTVEKVEKKERRRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 298
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E + I +R+G ++ K+ +VKN AQ+AH
Sbjct: 299 GV-QGLITYMRTDSTRISPVAQNEAANFIVDRFGEKYS------KHGSRVKNASGAQDAH 351
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V +G + +
Sbjct: 352 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMNVRLGQ--NGVQY 409
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 410 TANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVEGDIVKQVNSKPEQH 453
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 454 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVKLVAKRFEPTELGEIVNKL 513
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ +F ++ + +FTA+ME +LD+V G EW+ ++ ++ FS + + E+
Sbjct: 514 IVEFFPDIVNVTFTAEMEGKLDDVELGKEEWQKVIDAFYKPFSK--------EVAKAEEE 565
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 566 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 608
>gi|425736843|ref|ZP_18855119.1| DNA topoisomerase I [Staphylococcus massiliensis S46]
gi|425483315|gb|EKU50467.1| DNA topoisomerase I [Staphylococcus massiliensis S46]
Length = 689
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 246/646 (38%), Positives = 356/646 (55%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL + +D+ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVVASMGHVRDLPRSRMGIDVEDNCEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ +L+ +D RVVF+EIT+ ++
Sbjct: 64 VKELKRHAKKAKKVYLASDPDREGEAIAWHLANILELEDEKK-----IRVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + ++ REI+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KDSFKSPREIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW +E K S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWKIEGEFRYKRS------KFKAKFLHYKNK---PFKLENKNDVQAITS 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+++ F+V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ELDGDKFEVTKVTKKEKTRYPSNPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS +A + I + YG + ++ K + Q+AHEAI
Sbjct: 290 KGTVGLITYMRTDSTRISQDAKGDAYKYIVDTYGDQYTS----KRKQKGKQGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ D I FR++
Sbjct: 346 RPTSTFRSPDEMKSYLTRDQYRLYKLIWERFVASQMAPAILDTVALDLTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++E D+ L +++ G+ + +E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VETKDDQEKDKENK---LPNIEEGEKVTATNIEPSQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV +S+ P G +V+ ++
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKNESKRFVPTELGEIVNEQVTE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G TEWK ++ ++ F VE+ E+
Sbjct: 514 YFPEIVDVDFTVNMETLLDKIADGDTEWKKVITRFYDSFKK-----------DVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C CG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEKCG-SPMVIKMGRYGK--FMACSNFPDC 603
>gi|346307114|ref|ZP_08849258.1| DNA topoisomerase I [Dorea formicigenerans 4_6_53AFAA]
gi|345906914|gb|EGX76634.1| DNA topoisomerase I [Dorea formicigenerans 4_6_53AFAA]
Length = 693
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 255/680 (37%), Positives = 373/680 (54%), Gaps = 58/680 (8%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
+ +V+VES K K I+ +LG Y V S GHVRDL V +D+ +
Sbjct: 2 ARYLVIVESPAKVKTIKKFLGSNYVVAASNGHVRDLPKSQLGVDVKNDYEPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L +++ + A+ + LA+DPDREGEAI+WH+ + L+ +D V R+ F+EIT+
Sbjct: 62 EILANLRKEVKKADKVYLATDPDREGEAISWHLSKALKLEDK-----KVYRISFNEITKN 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K +L+ R+ID +LV A ARR LD ++G+ ISPLLW K+ SAGRVQS AL +I
Sbjct: 117 AVKASLKTPRDIDMDLVDAQQARRVLDRVVGYRISPLLWAKVKRGLSAGRVQSVALRIIA 176
Query: 529 DREMEIDEFKPQEYWTVEAVLD-KKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 587
DRE EID F P+EYWT++A L+ K E L + F +++I S
Sbjct: 177 DREAEIDAFIPEEYWTLDAELNVKGERKPL--------IAKFYGTEKEKMTIESKEHLNK 228
Query: 588 IEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
I ++++ A+++V + K +K P P+ TSTLQQ+A+ LNF+ + TM++AQ+LYEGV
Sbjct: 229 ILKELDGADYEVSEIKKGERTKKAPVPFTTSTLQQEASKALNFATSKTMRIAQQLYEGVD 288
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ G+ITY+RTD IS+EA +RS I E+YGS + EG RK + Q+AH
Sbjct: 289 VKGSGTVGIITYLRTDSTRISEEADANVRSYIGEQYGSQYVAAEGARK--SGSQKIQDAH 346
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPTD+ R PAML L D +LY LIW R +A +M PA V I A F
Sbjct: 347 EAIRPTDVTRTPAMLKDSLSRDQFRLYQLIWKRFVASRMMPAVYETTSVKI--AAGKYRF 404
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
+ S++ F GF+ Y +AG EE D E +L L L L + + KQH
Sbjct: 405 NVATSKIAFEGFRLIY--TEAG-------EEKD--EKGVLLKGLDENSELSLKQFDSKQH 453
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPA Y+E SLVK LEELGIGRPSTYA T+ ++ +R YV +++ LY G +V+
Sbjct: 454 FTQPPAHYTEASLVKTLEELGIGRPSTYAPTITLIINRRYVAKENKNLYMTELGEVVNNI 513
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI-----H 942
+ H F + D SFTA+ME+ LD V+ G WK ++ +++ + A+
Sbjct: 514 MMHSFPSIVDVSFTANMESLLDGVAEGKVRWKTIIENFYPDLDAAVKKAEEELEEVKIED 573
Query: 943 QVEKMLEKTFGDSL---------FASLPNKDR-------------SCPVCGEGTLIFKVS 980
+V ++ + G ++ F + P CP+CG+ +I K
Sbjct: 574 EVTDVICEECGRNMVIKYGPHGKFLACPGFPECRNTKPYLEKIGVKCPMCGKDVVIRKTK 633
Query: 981 RFGAGYFIGCNQHPRCNYIA 1000
+ G Y+ GC +P C +++
Sbjct: 634 K-GRRYY-GCENNPECEFMS 651
>gi|73748516|ref|YP_307755.1| DNA topoisomerase I [Dehalococcoides sp. CBDB1]
gi|289432564|ref|YP_003462437.1| DNA topoisomerase I [Dehalococcoides sp. GT]
gi|73660232|emb|CAI82839.1| DNA topoisomerase I [Dehalococcoides sp. CBDB1]
gi|288946284|gb|ADC73981.1| DNA topoisomerase I [Dehalococcoides sp. GT]
Length = 703
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 248/655 (37%), Positives = 367/655 (56%), Gaps = 46/655 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KA+ I LG + ++ + GH+RDL + V +++F+ + A +
Sbjct: 5 LVIVESPAKARTISKMLGKDFNIMATMGHIRDLPKSTLGVDVENNFTPKYVSLKAKAKVI 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A+ ++ + LA+DPDREGEAIAWHI E+ + + RVVFHEIT+ +I
Sbjct: 65 KELKEAVKNSKAIYLATDPDREGEAIAWHISEVTKANLS-----NPKRVVFHEITKEAID 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A + RE+D +LV A ARR LD L+G+ +SPLLWRK+ SAGRVQS +L +I DRE
Sbjct: 120 KAFKNTRELDMDLVNAQQARRVLDRLVGYKLSPLLWRKVQRGLSAGRVQSVSLKIIVDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++F EYW +EA+L KK + + +F A L + +K +L I + +EA I+++
Sbjct: 180 REIEKFVSTEYWNIEALLSKK----VKSAAFKATLAGYVTK--GKLEIHNESEADQIKKE 233
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ +++QV+K ++S +R++P P+ITSTLQQ+A KL FSA TM +AQ+LYEG+ +
Sbjct: 234 LEVSDYQVLKIKRKSNLRQSPAPFITSTLQQEAWRKLRFSAKQTMVIAQQLYEGLNVEGE 293
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD +++ A E R I E+YG + P++ R + KVK AQEAHEAIR
Sbjct: 294 GEVGLITYMRTDSTNVARTAVAETRDYITEKYGPAYLPKQA-RVFSSKVKGAQEAHEAIR 352
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADES----IVF 767
PT I R P + L D KLY LIW R +A QM PA +DI + +
Sbjct: 353 PTRINRTPDFIKKSLSADQFKLYQLIWQRMIASQMSPAVFDNTTIDIEAKHQPSKTRYLL 412
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
R++ S F GF Y + +++ L ++ G+ L L ++ QH
Sbjct: 413 RTTSSVNTFPGFTIVYIEGKDEDEEKEQSS----------LPPMEEGEELKLKSLDATQH 462
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RY+E +L+K LE+ GIGRPSTYA T+ +Q+R Y+T L P G +V+
Sbjct: 463 FTQPPPRYTEATLIKALEQNGIGRPSTYAPTISTIQEREYITKLKGSLKPSELGMLVNDL 522
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
L +F ++ FTA ME ELD ++ +W ++ ++ F I ++E
Sbjct: 523 LVEHFPDIIGIDFTAAMEAELDKIATEKLDWVPIIRRFYEPF-----------IKEIEAA 571
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPR----CNY 998
EK + + D CP C L+ K RFG FI C+++ + C Y
Sbjct: 572 SEKI--EKIKPPEEELDELCPECN-AKLVIKRGRFGK--FIACSRYSKEDDGCRY 621
>gi|418033241|ref|ZP_12671718.1| DNA topoisomerase I [Bacillus subtilis subsp. subtilis str. SC-8]
gi|351469389|gb|EHA29565.1| DNA topoisomerase I [Bacillus subtilis subsp. subtilis str. SC-8]
Length = 684
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 264/674 (39%), Positives = 369/674 (54%), Gaps = 58/674 (8%)
Query: 355 VESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSI 414
+ES KAK I+ YLG Y+V S GHVRDL V + +F + LK +
Sbjct: 1 MESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVLKEL 60
Query: 415 KVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVAL 474
K A A+ + LA+DPDREGEAIAWH+ L L N + RVVF+EIT+ +IK +
Sbjct: 61 KTAAKKAKKVYLAADPDREGEAIAWHLAHSLD----LDLN-SDCRVVFNEITKDAIKESF 115
Query: 475 QAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEI 534
+ R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE EI
Sbjct: 116 KHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDREKEI 175
Query: 535 DEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINS 594
++FKP+EYWT++ K + +TF F K +L + S + K+I ++
Sbjct: 176 NDFKPEEYWTIDGTFLKGQ----ETFE-----ASFFGKNGKKLPLNSEADVKEILSQLKG 226
Query: 595 ANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAA 654
+ V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 227 NQYTVEKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGREGTV 286
Query: 655 GLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTD 714
GLITYMRTD IS+ A E + I + YG G RK KK +NAQ+AHEAIRPT
Sbjct: 287 GLITYMRTDSTRISNTAVDEAAAFIDQTYGKEFLG--GKRKPAKKNENAQDAHEAIRPTS 344
Query: 715 IRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRV 774
+ R P+ L +L D ++LY LIW R +A QM PA + + VD+ N + FR++ S+V
Sbjct: 345 VLRKPSELKAVLGRDQMRLYKLIWERFVASQMAPAVLDTMSVDLTN--NGLTFRANGSKV 402
Query: 775 EFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPAR 834
+F GF Y + + EE DR +L L+ GD + ++E +QH TQPP R
Sbjct: 403 KFSGFMKVYVEGKDDQM-----EEKDR-----MLPDLQEGDTVLSKDIEPEQHFTQPPPR 452
Query: 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSE 894
Y+E LVK LEE GIGRPSTYA TL +Q R YV + ++ P G++V + +F E
Sbjct: 453 YTEARLVKTLEERGIGRPSTYAPTLDTIQRRGYVALDNKRFVPTELGQIVLDLIMEFFPE 512
Query: 895 VTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGD 954
+ + FTA ME +LD+V G TEW ++ ++++ F A+S + +VE E D
Sbjct: 513 IINVEFTAKMERDLDHVEEGNTEWVKIIDNFYTDFEKRVKKAES-EMKEVEIEPEYAGED 571
Query: 955 SLFASLPNKDR----------------------------SCPVCGEGTLIFKVSRFGAGY 986
S P + CP CGEG ++ + S+
Sbjct: 572 CELCSSPMVYKMGRYGKFLACSNFPDCRNTKPIVKQIGVKCPSCGEGNIVERKSK-KKRV 630
Query: 987 FIGCNQHPRCNYIA 1000
F GC+++P C +++
Sbjct: 631 FYGCDRYPDCEFVS 644
>gi|333371011|ref|ZP_08462978.1| DNA topoisomerase TopA [Desmospora sp. 8437]
gi|332976749|gb|EGK13580.1| DNA topoisomerase TopA [Desmospora sp. 8437]
Length = 691
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 267/649 (41%), Positives = 356/649 (54%), Gaps = 49/649 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
S+V+VES KAK I YLG Y V S GHVRDL V ++ F +
Sbjct: 4 SLVIVESPAKAKTIGKYLGRKYIVKASMGHVRDLPKSQLGVDTENGFQPKYITIRGKGDV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
LK ++ A + + LA+DPDREGEAIA+H+ L + + E RVVF+EIT+ ++
Sbjct: 64 LKELRDAKKKVKRVYLAADPDREGEAIAYHLAHSLNME--VDEE---CRVVFNEITKQAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LVQA ARR LD L+G+ ISP+LW+K+ SAGRVQS A+ LI DR
Sbjct: 119 KDAFKHPRKIDLDLVQAQQARRILDRLVGYGISPVLWKKVKKGLSAGRVQSVAVKLIIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI F+P+EYWTV AVLD + +TF H + K L + E K++ +
Sbjct: 179 EKEIRNFQPEEYWTVTAVLDAEG----ETFEAKFHGYGKKKKELK-----NEAEVKELLE 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I F V+ RS R+NP P +ITS+LQQ+AA KLNF A TM +AQ+LYEGV L
Sbjct: 230 AIKGKRF-VVDEVNRSERRRNPAPPFITSSLQQEAARKLNFRAAKTMAVAQQLYEGVNLG 288
Query: 650 DGTAA-GLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
+ GLITYMRTD IS+ A +E R I +YG + PR + KK AQ+AHE
Sbjct: 289 KKEGSVGLITYMRTDSTRISETARQEARDYIQGQYGESYVTAR-PRTH-KKQTGAQDAHE 346
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
IRPT + R PA + L D +LY LIW R +A QM PA + QI DI + +FR
Sbjct: 347 GIRPTSVLRTPAEMKPHLSRDQYRLYKLIWERFVASQMSPAVLDQISADIRVGE--ALFR 404
Query: 769 SSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F GF Y E D G EEN L +L+ G L + KQH
Sbjct: 405 ATGSKVKFPGFMKVYTEGNDDGT-----KEEN------KFLPALEKGQLLKRKSIRPKQH 453
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPP RY+E LVK LEE GIGRPSTYA TL +Q R YV ++ R P G +V +
Sbjct: 454 FTQPPPRYTEARLVKTLEEKGIGRPSTYAPTLSTIQKRGYVMLEERRFVPSELGEVVISL 513
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ +F E+ D FT +ME LD + G +W +L ++ +F A+ E+M
Sbjct: 514 MEEFFPEILDVEFTVNMEESLDYIEEGKVDWVQILERFYEKFQKRLEVAE-------EEM 566
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E D + D C CG +++K R+G F+ C+ P C
Sbjct: 567 KEVEIRDEV------SDEVCEKCG-SPMVYKFGRYGK--FLACSGFPDC 606
>gi|289168063|ref|YP_003446332.1| DNA topoisomerase I [Streptococcus mitis B6]
gi|288907630|emb|CBJ22467.1| DNA topoisomerase I [Streptococcus mitis B6]
Length = 695
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 252/651 (38%), Positives = 366/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+VL S GH+RDL S SV ++++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRKIDMDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI+ F+P+EYWT++ V K T F A K+ L + S+ E K++
Sbjct: 190 ENEINAFQPEEYWTIDGVFKK------GTKQFQASFYGVDGKK---LKLTSNDEVKEVLS 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ S +F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQF 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 AANGSQVKFDGYLAIYNDYDKN----------------KMLPDMAVGDVVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ YF ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+
Sbjct: 516 IVDYFPDIVNVTFTAEMEGKLDDVEVGKEQWQRVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VC ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCS-SPMVIKLGRFGK--FYACSNFPDCRH 610
>gi|315282097|ref|ZP_07870584.1| DNA topoisomerase I [Listeria marthii FSL S4-120]
gi|313614257|gb|EFR87914.1| DNA topoisomerase I [Listeria marthii FSL S4-120]
Length = 692
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 254/647 (39%), Positives = 360/647 (55%), Gaps = 48/647 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG ++V S GHVRDL V + D+ + L
Sbjct: 5 LVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTEHDYEPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQ--QQDALHENITVARVVFHEITEAS 469
K +K A A+ + LA+DPDREGEAIAWH+ L+ Q D L RVVF+EIT+ +
Sbjct: 65 KELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQSDKL-------RVVFNEITKEA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K + + R+ID +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL +I D
Sbjct: 118 VKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIID 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FKP EYWT++ K + F A+ K+ + + + K++
Sbjct: 178 REKEINNFKPXEYWTIDGNFLKGKK------KFQANFYGVNGKKK---KLSTADDVKEVM 228
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
I +F V +K+ +R P+ TS+LQQ+AA KLN+ TM LAQ+LYEG+ L
Sbjct: 229 SAIKGKSFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLG 288
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
GLITYMRTD I+D A E + I YGS + ++ K K AQ+AHEA
Sbjct: 289 KQGTVGLITYMRTDSTRIADSAILEAGNYIKATYGSEFS--RNHKRSDKNAKGAQDAHEA 346
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT R P + L D L+LY LIW R +A QM PA + ++VD+ N + FR+
Sbjct: 347 IRPTSAMRSPQEVKEYLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDN--NGVNFRA 404
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+++F GF Y + + KEN IL LK GD + +E +QH T
Sbjct: 405 NGSKIKFHGFMKVYVESNDDNTEEKEN----------ILPDLKKGDKVQSESLEQRQHFT 454
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP RY+E LVK LEE+GIGRPSTY+ TL +Q RNYV++ ++ P G +V+ +
Sbjct: 455 QPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIE 514
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF E+ D FTA+ME+ELD V G EW ++ +++ RF A + + ++E E
Sbjct: 515 DYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKRFEPNVIKADA-EMEKIEIKDE 573
Query: 950 KTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C +CG +++K+ ++G F+ C++ P C
Sbjct: 574 PAGID------------CDLCG-APMVYKMGKYGK--FLACSRFPDC 605
>gi|298242455|ref|ZP_06966262.1| DNA topoisomerase I [Ktedonobacter racemifer DSM 44963]
gi|297555509|gb|EFH89373.1| DNA topoisomerase I [Ktedonobacter racemifer DSM 44963]
Length = 811
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 249/672 (37%), Positives = 361/672 (53%), Gaps = 66/672 (9%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K +V+VES KAK I+ +LG +EV S GH+ DL + V DF+ +EV
Sbjct: 2 AKKLVIVESPAKAKTIEKFLGRDFEVRASMGHIVDLPKKGLGVNTRKDFTPKYEVIEKKD 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+ +K A A+ + LA DPDREGE IAW + +L ++ R VFHEIT+
Sbjct: 62 RLIDELKAASKRADEVFLAPDPDREGEFIAWSLQNVLGLKNP-------HRAVFHEITKR 114
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+++ A++ R I+ +L A ARR LD L+G+ ISPLLWR++ SAGRVQS AL LIC
Sbjct: 115 AVQEAIKQPRRINEDLFNAQQARRVLDRLVGYKISPLLWRRVQSGTSAGRVQSVALRLIC 174
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKES------------HSLDTFS----------FPAHL 566
DRE EI F P EYW++ A L K++ + L+ + PA
Sbjct: 175 DREAEIQAFVPDEYWSIIATLSKQQRSERFEASLIARLNDLEALNASESSAEGEESPAAA 234
Query: 567 THFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAAN 626
+ ++ + ++ + S EA I + A + V+K +R R+ P PY TST+QQDA++
Sbjct: 235 SGSKAGKKGRIKVSSKEEADTILSDLKGATYSVLKYEEREQRRQPPFPYTTSTMQQDASS 294
Query: 627 KLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSH 686
+L F TM LAQ+LYEG++L + GLITYMRTD ISDEA K ++ I + YG
Sbjct: 295 RLYFKPKRTMSLAQQLYEGIELGERGHQGLITYMRTDSTRISDEAQKMVKGFISQEYGQE 354
Query: 687 HAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQM 746
+ G + K Q+AHEAIRPTD+ P + L + KLY+LIW+R +A M
Sbjct: 355 YI---GGGRTSKAKATTQDAHEAIRPTDVSLTPKSVKSYLSPEQYKLYTLIWNRFVASFM 411
Query: 747 QPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFA 806
PA ++ DIG VFR++ S ++F GF A + EE++R
Sbjct: 412 APAIFDTVRADIGA--RQYVFRATGSNLKFPGFYAVW-----------PREEDER----- 453
Query: 807 ILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRN 866
+L ++K G+ L ++ +QH TQPP R++E SL+K+LEE GIGRPSTY + LQDR
Sbjct: 454 LLPTMKVGEDLDFHGLKPEQHFTQPPPRFTEASLIKELEEQGIGRPSTYVPIISTLQDRG 513
Query: 867 YVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYW 926
Y + R P + G V+ ++ +F ++ D +FTADME +LD+V G W L +++
Sbjct: 514 YAEQEQRRFMPTWLGATVNEVMNKHFPDIVDTNFTADMERKLDDVEEGRRSWIEFLRNFY 573
Query: 927 SRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGY 986
F + + + E + D + A + D CP CG L+ + RFG
Sbjct: 574 GDF--------KVTMEKAEAEM-----DRVQAPVEEMDELCPDCGRH-LVIRNGRFGR-- 617
Query: 987 FIGCNQHPRCNY 998
FI C+ P C Y
Sbjct: 618 FISCSGFPECRY 629
>gi|406658362|ref|ZP_11066502.1| DNA topoisomerase TopA [Streptococcus iniae 9117]
gi|405578577|gb|EKB52691.1| DNA topoisomerase TopA [Streptococcus iniae 9117]
Length = 711
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 247/649 (38%), Positives = 363/649 (55%), Gaps = 57/649 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D+++ +
Sbjct: 28 NLVIVESPAKAKTIEKYLGRNYKVVASVGHIRDLKKSSMSIDFDNNYEPQYINIRGKGPL 87
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ S+K A+ + LASDPDREGEAI+WH+ +L D +N RVVF+EIT+ ++
Sbjct: 88 INSLKKEAKHAKKVFLASDPDREGEAISWHLSHILGL-DLEEKN----RVVFNEITKDAV 142
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A REID NLV + ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 143 KNAFVEPREIDMNLVDSQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 202
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E +I F P+EYW+++++ K F A K+ + +H + KD+
Sbjct: 203 ENDIKSFVPEEYWSIDSIFKKGSK------KFQASFYGIDGKKT---KLSTHEDVKDVLS 253
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+I S F V K K+ R P PY TS+LQQDAANK+NF TM +AQ+LYEG+ L
Sbjct: 254 RITSDEFDVNKVEKKERRRNAPLPYTTSSLQQDAANKINFRTRKTMMVAQQLYEGINLGS 313
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
GLITYMRTD IS A + S I +R+GS ++ K+ KVKN AQ+AH
Sbjct: 314 NGTQGLITYMRTDSTRISPYAQNDASSFISQRFGSQYS------KHGNKVKNSSGAQDAH 367
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ L++D LKLY+LIW+R +A QM A ++V + ++F
Sbjct: 368 EAIRPSSVHHTPESIAQYLNKDQLKLYTLIWNRFVASQMTAAIFDTMKVTL--EQNKVIF 425
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+++F G+ A Y D D +L + G+ + +QH
Sbjct: 426 VANGSQIKFDGYMAVYNDSDKN----------------KMLPEMSEGEVVKKESTNPEQH 469
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPAR+SE +L+K LEE G+GRPSTYA TL+V+Q R YV + ++ P G +V+
Sbjct: 470 FTQPPARFSEATLIKTLEENGVGRPSTYAPTLEVIQRRYYVKLAAKRFEPTELGEIVNNL 529
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ +F + D FTA+ME +LD V G +W+ ++ ++ F+ + A+ I +++
Sbjct: 530 IVEFFPGIVDVKFTAEMEAKLDQVEIGERQWQTVIDQFYKPFADDLSAAEE-GIEKIQIK 588
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E D C +CGE ++ K+ RFG F C+ P C
Sbjct: 589 DEPAGFD------------CELCGE-PMVIKLGRFGK--FYACSNFPDC 622
>gi|312126811|ref|YP_003991685.1| DNA topoisomerase i [Caldicellulosiruptor hydrothermalis 108]
gi|311776830|gb|ADQ06316.1| DNA topoisomerase I [Caldicellulosiruptor hydrothermalis 108]
Length = 693
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 251/649 (38%), Positives = 366/649 (56%), Gaps = 48/649 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KAK I YLG ++V S GHVRDL V ++ F+ +
Sbjct: 2 KKLVIVESPAKAKTIAKYLGKEFKVEASMGHVRDLPKSDLGVDIENGFAPKYINIRGKAD 61
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ +K + AE + LA+DPDREGEAI+WH+ +L L N V R+ F+EIT+ +
Sbjct: 62 VINRLKKSAESAEKVYLATDPDREGEAISWHLATIL----GLDVNDNV-RITFNEITKKA 116
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
++ +L+ AR ID NLV A ARR LD L+G+ +SP LW K+ G SAGRVQS A L+ +
Sbjct: 117 VQESLKNARPIDQNLVNAQQARRVLDRLVGYKLSPFLWEKVKGGLSAGRVQSVATRLVVE 176
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ FKP+EYWT+EAV K D F A F + ++ + + + ++IE
Sbjct: 177 REEEIENFKPEEYWTLEAVFKK------DAQEFKAK---FYGDKKGKIELKNQGQVQEIE 227
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+KI + F+V+K + P P+ITSTLQQ+A+ KL F+ TM +AQ LYEGV++
Sbjct: 228 EKIKNKEFKVVKIKVSEKKKNPPPPFITSTLQQEASRKLRFTPAKTMAVAQMLYEGVEIK 287
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
+ GLITYMRTD IS+EA + R+LI +++G + PE+ PR Y K K+AQ+AHEA
Sbjct: 288 GEGSVGLITYMRTDSTRISEEAQQAARNLILQKFGKEYLPEK-PRVY-KTKKDAQDAHEA 345
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT + P + L D KLY LI+ R +A QM+ + + ++ E +F+
Sbjct: 346 IRPTYLDMDPESIKDSLTPDQYKLYKLIYDRFLASQMESSIYEVLSAEL--EVEGYIFKL 403
Query: 770 SCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHT 829
+ S+++F GF Y + G E EEN L ++ G+ L ++E KQH T
Sbjct: 404 TGSKLKFAGFMEVYVE---GKDTEDEEEENQ-------LPEIREGEVLKPIKLESKQHFT 453
Query: 830 QPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLS 889
QPP+RY+E +L+K LEE GIGRPSTYA T++ + +R YV + R L P G++V+ L
Sbjct: 454 QPPSRYTEATLIKALEEKGIGRPSTYAPTIQTILERGYVVKEDRFLKPTELGKLVTNILK 513
Query: 890 HYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLE 949
YF ++ D FTA++E+ LD + G EW ++ Y+ +EK LE
Sbjct: 514 EYFKDIIDIEFTAELESNLDKIEEGKLEWTEVVRKYY---------------QPLEKELE 558
Query: 950 KTFGDSLFASLPNK--DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
L + ++ D C CG ++ K R+G F+ C +P C
Sbjct: 559 IARATLLKVKVEDEETDIVCENCGR-KMVIKKGRYGK--FLACPGYPEC 604
>gi|450131242|ref|ZP_21869352.1| DNA topoisomerase I [Streptococcus mutans NLML8]
gi|449153979|gb|EMB57602.1| DNA topoisomerase I [Streptococcus mutans NLML8]
Length = 705
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 247/651 (37%), Positives = 366/651 (56%), Gaps = 57/651 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D+++ +
Sbjct: 21 KNLVIVESPAKAKTIEKYLGRSYKVVASVGHIRDLKKSSMSIDFDNNYEPQYINIRGKGP 80
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ S+K A+ + LASDPDREGEAI+WH+ +L D +N RVVF+EIT+ +
Sbjct: 81 LINSLKKEAKNAKQIFLASDPDREGEAISWHLAHILDL-DLKGKN----RVVFNEITKDA 135
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A R+ID +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI D
Sbjct: 136 VKNAFVEPRQIDMDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIID 195
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI FKP+EYW+++ K F A+ +K+ + S+ + K +
Sbjct: 196 RENEIKAFKPEEYWSIDGFFKKGNK------KFQANFYGLDNKKT---KLKSNDDVKKVL 246
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I + +F V K K+ R P PY TS+LQQDAANK+NF TM +AQ+LYEG++L
Sbjct: 247 TRIKNDDFLVDKVEKKERKRNAPLPYTTSSLQQDAANKINFRTRKTMMIAQQLYEGIRLG 306
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA---QEA 706
GLITYMRTD IS A + + I E +G+ ++ K+ V+NA Q+A
Sbjct: 307 SNGQQGLITYMRTDSTRISPVAQNDAANYITEHFGAEYS------KHGNHVRNASGAQDA 360
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP+++ P ++ LD+D LKLY+LIW+R +A QM A ++V++ ++
Sbjct: 361 HEAIRPSNVNHTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTVKVNL--TQNGVL 418
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
F ++ S+++F G+ A Y D D + L + G+ + +Q
Sbjct: 419 FIANGSQIKFKGYMAVYNDSDKTKV----------------LPEMIKGETVKKISANPEQ 462
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARYSE SL+K LEE G+GRPSTYA TL+ +Q R YV + S+ P G +V++
Sbjct: 463 HFTQPPARYSEASLIKTLEENGVGRPSTYAPTLETIQKRYYVRLVSKRFEPTELGEIVNS 522
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ +F ++ D FTA+ME++LD V G EW+ ++ ++ F A+ Q+EK
Sbjct: 523 LIIEFFPDIVDVKFTAEMESKLDEVEVGKEEWQKVIDQFYKPFEKEVIKAE----EQMEK 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
+ K C VCG ++ K+ R+G F C+ P C+
Sbjct: 579 IQIKDEPAGF---------DCDVCGH-PMVIKLGRYGK--FYACSNFPDCH 617
>gi|289578441|ref|YP_003477068.1| DNA topoisomerase I [Thermoanaerobacter italicus Ab9]
gi|289528154|gb|ADD02506.1| DNA topoisomerase I [Thermoanaerobacter italicus Ab9]
Length = 693
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 251/654 (38%), Positives = 379/654 (57%), Gaps = 54/654 (8%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
KS+V+VES KAK I +LG ++V S GHVRDL + +++F+ +
Sbjct: 2 AKSLVIVESPAKAKTISKFLGKNFKVAASMGHVRDLPKSQLGIDIENNFTPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV---ARVVFHEI 465
++++K A+ + LA+DPDREGEAI+WHI ++L N+ + R+ FHEI
Sbjct: 62 AIIENLKKEAKDADKIFLATDPDREGEAISWHIAQLL--------NLNIEEPCRIEFHEI 113
Query: 466 TEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALS 525
T+ +++ AL++ R ID NLV A ARR LD L+G+ ISPLLW+K+ SAGRVQS A
Sbjct: 114 TKNAVQTALKSPRSIDLNLVDAQQARRILDRLVGYKISPLLWKKIKRGLSAGRVQSVAAR 173
Query: 526 LICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEA 585
LICDRE EI+ F P+EYW++ A+L D +F F + +++ + +
Sbjct: 174 LICDREREIEAFVPEEYWSITAILS-------DEKNFTKFEAKFYGTKEDKVELKTK--- 223
Query: 586 KDIEQKINSANFQVIKNSKRSMVRK-NPT-PYITSTLQQDAANKLNFSATYTMKLAQKLY 643
+D+++ + + + + + ++ V+K NP+ P+ITSTLQQ+A+ KL F+A TM +AQ+LY
Sbjct: 224 EDVDKVLAALSEEYTVDKIKTGVKKRNPSPPFITSTLQQEASRKLGFTAKKTMLIAQQLY 283
Query: 644 EGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPR-KYFKKVKN 702
EGV++ + GLITY+RTD +++EA E+ I E++G +A PR Y K N
Sbjct: 284 EGVEIKGEGSVGLITYIRTDSTRVANEAKAEVYKYIVEKFGKEYA---NPRANYASKKAN 340
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
Q+AHEAIRPT I R P + L D KLY L+WSR +A QM PA + +DI N
Sbjct: 341 VQDAHEAIRPTSIYRDPESIKDSLTPDQYKLYKLVWSRFIASQMAPAIYDTVSMDIVN-- 398
Query: 763 ESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEV 822
VF++S S ++FLGF Y V+ I+ E EE + L+ G L L E+
Sbjct: 399 NGYVFKASGSSIKFLGFMTVY--VEGTDIQ--EEEEK-------TVPVLQEGTKLLLEEL 447
Query: 823 ELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGR 882
+ QH TQPP RY+E SL+K+LEE GIGRPSTYA T+ L +R YV ++ L P G
Sbjct: 448 KPIQHFTQPPPRYTEASLIKELEEKGIGRPSTYAPTISTLLERGYVVKDNKNLKPTELGF 507
Query: 883 MVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIH 942
+V+ L +F+++ D FTA+ME +LD + G +W ++ ++++ F ++L I
Sbjct: 508 IVTDALKEFFTKIVDVKFTAEMEEQLDKIEEGQAKWYEVVQEFYNDFY------KTLKIA 561
Query: 943 QVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ E+M E + + + D C +CG ++ K R+G F+ C+ P C
Sbjct: 562 E-EQMEEIDIKEEVEVT----DIKCELCGR-PMVVKKGRYGK--FLACSGFPEC 607
>gi|166031218|ref|ZP_02234047.1| hypothetical protein DORFOR_00905 [Dorea formicigenerans ATCC 27755]
gi|166029065|gb|EDR47822.1| DNA topoisomerase I [Dorea formicigenerans ATCC 27755]
Length = 693
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 255/680 (37%), Positives = 374/680 (55%), Gaps = 58/680 (8%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
+ +V+VES K K I+ +LG Y V S GHVRDL V ++D+ +
Sbjct: 2 ARYLVIVESPAKVKTIKKFLGSNYVVAASNGHVRDLPKSQLGVDVENDYEPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L +++ + A+ + LA+DPDREGEAI+WH+ + L+ +D V R+ F+EIT+
Sbjct: 62 EILANLRKEVKKADKVYLATDPDREGEAISWHLSKALKLEDK-----KVYRISFNEITKN 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K +L+ R+ID +LV A ARR LD ++G+ ISPLLW K+ SAGRVQS AL +I
Sbjct: 117 AVKASLKNPRDIDMDLVDAQQARRVLDRVVGYRISPLLWAKVKRGLSAGRVQSVALRIIA 176
Query: 529 DREMEIDEFKPQEYWTVEAVLD-KKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 587
DRE EID F P+EYWT++A L+ K E L + F +++I S
Sbjct: 177 DREAEIDAFIPEEYWTLDAELNVKGERKPL--------IAKFYGTEKEKMTIESKEHLNK 228
Query: 588 IEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
I ++++ A+++V + K +K P P+ TSTLQQ+A+ LNF+ + TM++AQ+LYEGV
Sbjct: 229 ILKELDGADYEVSEIKKGERTKKAPVPFTTSTLQQEASKALNFATSKTMRIAQQLYEGVD 288
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ G+ITY+RTD IS+EA +RS I E+YGS + EG RK + Q+AH
Sbjct: 289 VKGSGTVGIITYLRTDSTRISEEADANVRSYIGEQYGSQYVAAEGTRK--SGSQKIQDAH 346
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPTD+ R PAML L D +LY LIW R +A +M PA V I A F
Sbjct: 347 EAIRPTDVTRTPAMLKDSLSRDQFRLYQLIWKRFVASRMMPAVYETTSVKI--AAGKYRF 404
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
+ S++ F GF+ Y +AG EE D E +L L L L + + KQH
Sbjct: 405 NVATSKIAFEGFRLIY--TEAG-------EEKD--EKGVLLKGLDENSELSLEQFDSKQH 453
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPA Y+E SLVK LEELGIGRPSTYA T+ ++ +R YV +++ LY G +V+
Sbjct: 454 FTQPPAHYTEASLVKTLEELGIGRPSTYAPTITLIINRRYVAKENKNLYMTELGEVVNNI 513
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHI-----H 942
+ H F + D SFTA+ME+ LD V+ G WK ++ +++ + A+
Sbjct: 514 MMHSFPSIVDVSFTANMESLLDGVAEGKVRWKTIIENFYPDLDAAVKKAEEELEEVKIED 573
Query: 943 QVEKMLEKTFGDSL---------FASLPNKDR-------------SCPVCGEGTLIFKVS 980
+V ++ + G ++ F + P CP+CG+ +I K
Sbjct: 574 EVTDVICEECGRNMVIKYGPHGKFLACPGFPECRNTKPYLEKIGVKCPMCGKDVVIRKTK 633
Query: 981 RFGAGYFIGCNQHPRCNYIA 1000
+ G Y+ GC +P C +++
Sbjct: 634 K-GRRYY-GCENNPECEFMS 651
>gi|387786210|ref|YP_006251306.1| DNA topoisomerase I [Streptococcus mutans LJ23]
gi|449921533|ref|ZP_21798968.1| DNA topoisomerase I [Streptococcus mutans 1SM1]
gi|449927022|ref|ZP_21801054.1| DNA topoisomerase I [Streptococcus mutans 4SM1]
gi|449980083|ref|ZP_21817004.1| DNA topoisomerase I [Streptococcus mutans 5SM3]
gi|450044528|ref|ZP_21837896.1| DNA topoisomerase I [Streptococcus mutans N34]
gi|450127416|ref|ZP_21868574.1| DNA topoisomerase I [Streptococcus mutans U2A]
gi|450158663|ref|ZP_21878979.1| DNA topoisomerase I [Streptococcus mutans 66-2A]
gi|379132611|dbj|BAL69363.1| DNA topoisomerase I [Streptococcus mutans LJ23]
gi|449156972|gb|EMB60426.1| DNA topoisomerase I [Streptococcus mutans 1SM1]
gi|449160020|gb|EMB63308.1| DNA topoisomerase I [Streptococcus mutans 4SM1]
gi|449177490|gb|EMB79791.1| DNA topoisomerase I [Streptococcus mutans 5SM3]
gi|449201495|gb|EMC02486.1| DNA topoisomerase I [Streptococcus mutans N34]
gi|449230804|gb|EMC30050.1| DNA topoisomerase I [Streptococcus mutans U2A]
gi|449242161|gb|EMC40764.1| DNA topoisomerase I [Streptococcus mutans 66-2A]
Length = 705
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 247/651 (37%), Positives = 366/651 (56%), Gaps = 57/651 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D+++ +
Sbjct: 21 KNLVIVESPAKAKTIEKYLGRSYKVVASVGHIRDLKKSSMSIDFDNNYEPQYINIRGKGP 80
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ S+K A+ + LASDPDREGEAI+WH+ +L D +N RVVF+EIT+ +
Sbjct: 81 LINSLKKEAKNAKQIFLASDPDREGEAISWHLAHILDL-DLKGKN----RVVFNEITKDA 135
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A R+ID +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI D
Sbjct: 136 VKNAFVEPRQIDMDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIID 195
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI FKP+EYW+++ K F A+ +K+ + S+ + K +
Sbjct: 196 RENEIKAFKPEEYWSIDGFFKKGNK------KFQANFYGLDNKKT---KLKSNDDVKKVL 246
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I + +F V K K+ R P PY TS+LQQDAANK+NF TM +AQ+LYEG++L
Sbjct: 247 TRIKNDDFLVDKVEKKERKRNAPLPYTTSSLQQDAANKINFRTRKTMMVAQQLYEGIRLG 306
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA---QEA 706
GLITYMRTD IS A + + I E +G+ ++ K+ V+NA Q+A
Sbjct: 307 SNGQQGLITYMRTDSTRISPVAQNDAANYITEHFGAEYS------KHGNHVRNASGAQDA 360
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP+++ P ++ LD+D LKLY+LIW+R +A QM A ++V++ ++
Sbjct: 361 HEAIRPSNVNHTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTVKVNL--TQNGVL 418
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
F ++ S+++F G+ A Y D D + L + G+ + +Q
Sbjct: 419 FIANGSQIKFKGYMAVYNDSDKTKV----------------LPEMIKGETVKKISANPEQ 462
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARYSE SL+K LEE G+GRPSTYA TL+ +Q R YV + S+ P G +V++
Sbjct: 463 HFTQPPARYSEASLIKTLEENGVGRPSTYAPTLETIQKRYYVRLVSKRFEPTELGEIVNS 522
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ +F ++ D FTA+ME++LD V G EW+ ++ ++ F A+ Q+EK
Sbjct: 523 LIIEFFPDIVDVKFTAEMESKLDEVEVGKEEWQKVIDQFYKPFEKEVVKAE----EQMEK 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
+ K C VCG ++ K+ R+G F C+ P C+
Sbjct: 579 IQIKDEPAGF---------DCDVCGH-PMVIKLGRYGK--FYACSNFPDCH 617
>gi|334340430|ref|YP_004545410.1| DNA topoisomerase I [Desulfotomaculum ruminis DSM 2154]
gi|334091784|gb|AEG60124.1| DNA topoisomerase I [Desulfotomaculum ruminis DSM 2154]
Length = 728
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 266/692 (38%), Positives = 375/692 (54%), Gaps = 64/692 (9%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I YLG + V S GHVRDL V D +FS +
Sbjct: 3 KTLVIVESPAKAKSIGKYLGRNFTVKASMGHVRDLPKSQFGVDIDQEFSPKYITIRGKGD 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+K ++ A+ ++ ++LASDPDREGEAIAWH+ ++L + + R+ F+EIT+ +
Sbjct: 63 IIKELRSAVKKSDRILLASDPDREGEAIAWHLTKLLDIDEQ-----SPCRIEFNEITKNA 117
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A++ R ID + V A ARR LD L+G+N+SPLLWRK+ SAGRVQS A+ LICD
Sbjct: 118 IQQAVKNPRPIDQDRVNAQQARRILDRLVGYNLSPLLWRKVKKGLSAGRVQSVAVRLICD 177
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI F P+EYWT+ K F A L +++K++ I + I
Sbjct: 178 REDEIQAFIPEEYWTLMGKFVKSGKSP-----FEAKLHKYKNKKI---EIPNQEMMDKIL 229
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ A++QV SK+ R P+ TS+LQQ+A+ KLNF++ TM +AQ+LYEG+ L
Sbjct: 230 GDLKGASYQVATVSKKEKQRNPAAPFTTSSLQQEASRKLNFTSRKTMVVAQQLYEGLDLG 289
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEA 709
AGL+TY+RTD +S+ A++E + I +R+G + P++ PR+ K K Q+AHEA
Sbjct: 290 KEGPAGLVTYIRTDSTRVSETASEEAKKFILDRFGPAYVPKQ-PRQTVAKGK-VQDAHEA 347
Query: 710 IRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769
IRPT I R P + L D KLY LIWSR +A QM A + +DI D VFR+
Sbjct: 348 IRPTSIERDPENIKQYLTNDQYKLYKLIWSRFLASQMASAVMDTTSLDIAAGD--YVFRA 405
Query: 770 SCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+ S ++F GF Y E D G+ KE E +L L GD + + KQH
Sbjct: 406 TGSVIKFPGFMQVYIEGNDDGS---KEEER--------LLPELSEGDKVEAKNLTPKQHF 454
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RY++ +LVK LEE GIGRPSTYA + +Q R YV +++ YP G +V L
Sbjct: 455 TQPPPRYTDATLVKILEEKGIGRPSTYAPIVDTIQKRGYVVRENKQFYPTELGIVVIDLL 514
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+YF ++ + FTA+ME +LD V+ G W G+L D++ F A I +V+
Sbjct: 515 KNYFPDIINIEFTAEMEEKLDKVAEGDERWVGILKDFYQPFQETLENADE-KIGKVQVAD 573
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
E T D C +CG ++ K+ R+G F+ C P C
Sbjct: 574 EVT------------DEKCELCGR-NMVIKLGRYGK--FLACPGFPDC------------ 606
Query: 1009 EEDTLQRNTN-VDEPKLIGHHPASKEKVLLKS 1039
RNT + EP +G S E VL +S
Sbjct: 607 ------RNTKPLLEPTGVGCPKCSGEMVLRRS 632
>gi|167751469|ref|ZP_02423596.1| hypothetical protein EUBSIR_02465 [Eubacterium siraeum DSM 15702]
gi|167655277|gb|EDR99406.1| DNA topoisomerase I [Eubacterium siraeum DSM 15702]
Length = 713
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 254/646 (39%), Positives = 364/646 (56%), Gaps = 43/646 (6%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y V+ S GH+RDL V D++F +E +
Sbjct: 18 LVIVESPAKAKTIEKYLGKDYSVVASVGHIRDLPKSKLGVDVDNNFEPKYENKKDKAALI 77
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K ++ + LA+DPDREGEAI+WH+ +L + + V RV F EIT++ I+
Sbjct: 78 KELKKDAKASDIVYLATDPDREGEAISWHLAHVL----GISPDAPV-RVTFSEITKSGIE 132
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ R +D +L+ A ARR LD ++G+ +SP LW+K+ SAGRVQS A+ LI DRE
Sbjct: 133 AGMSHPRTLDMDLINAQQARRILDRIVGYKLSPFLWKKVRRGLSAGRVQSVAVRLIVDRE 192
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ F+ QEYW+++A L S +FPA LT + ++ L+ E +
Sbjct: 193 QEIESFEAQEYWSIDAKLLSASSRR----AFPAKLTEVKGEKFKALN---KEETDKVLAM 245
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ + F +I N K S +K P P + TSTLQQ+A+ KL+F+A TMK AQ+LYEGV++PD
Sbjct: 246 LENGEF-IITNIKNSTRKKTPAPPFTTSTLQQEASRKLSFNARRTMKAAQELYEGVEIPD 304
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
A G+ITYMRTD L ISDEA +I YG + P + PR FK NAQ+AHEAI
Sbjct: 305 MGAVGIITYMRTDSLRISDEAKAAAAQMIESTYGKEYLPSK-PR-VFKSKNNAQDAHEAI 362
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT I P + L D KLY LIW R MA QM+ + VDI + +F+++
Sbjct: 363 RPTIITLTPEKVKSALSGDQYKLYKLIWERFMASQMENQLLDTKAVDITCGE--CLFKAN 420
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
V+F GF YE E+++ND E A L +L+ G+ L + E+ QH TQ
Sbjct: 421 GYTVKFDGFTKLYE----------ESKDNDEEEGGA-LPALEVGEKLKVKELTGNQHFTQ 469
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E SL+K LEE GIGRPSTYA T+ + DR+YV +++ L P G +++ +
Sbjct: 470 PPPRYTEASLIKALEENGIGRPSTYAPTIATILDRHYVEREAKQLKPTSLGIVITDLMKG 529
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
+F + D FTA ME++LD + AG +W +L +++ F T + EK +E
Sbjct: 530 HFERIVDAKFTAQMESDLDKIEAGKADWVDVLGKFYTGFDKMLT--------KAEKDME- 580
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
G + D C CG+ ++ K+ +G F+GC+ P C
Sbjct: 581 --GKRVKIPDEPTDIVCDKCGK-PMVIKIGPYGK--FLGCSGFPEC 621
>gi|255524244|ref|ZP_05391203.1| DNA topoisomerase I [Clostridium carboxidivorans P7]
gi|296185365|ref|ZP_06853775.1| DNA topoisomerase I [Clostridium carboxidivorans P7]
gi|255512069|gb|EET88350.1| DNA topoisomerase I [Clostridium carboxidivorans P7]
gi|296050199|gb|EFG89623.1| DNA topoisomerase I [Clostridium carboxidivorans P7]
Length = 701
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 257/680 (37%), Positives = 373/680 (54%), Gaps = 59/680 (8%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
G+ +V+VES KAK I YLG Y V S GHVRDL V D++++ +
Sbjct: 2 GQKLVIVESPAKAKTIGKYLGKNYIVEASMGHVRDLPKSQLGVDIDNNYNPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
L +K ++ + LA+DPDREGEAI+WH+ +L+ L E+ R+ FHEIT+
Sbjct: 62 ELLDKLKKEAKKSDKIYLATDPDREGEAISWHLSHVLK----LDED-DKCRIEFHEITKN 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+IK A++ R+I+ +LV A ARR LD L+G+ ISP+LWRK+ SAGRVQS L ++C
Sbjct: 117 AIKSAIKEPRKINVDLVNAQQARRVLDRLVGYKISPILWRKVKWGLSAGRVQSVTLKMVC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI+ F +EYWTVE L K ++ SF L+ F K+ + IG+ E +
Sbjct: 177 DREKEIENFVAKEYWTVECELAKNKTKK----SFKVKLSTFNKKK---IEIGTKEEVDKV 229
Query: 589 EQKINSANFQVIKNSKRSMVRKNP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQ 647
+++N F ++K K++ KNP P+ TSTLQQDA KLNF+ TM +AQ+LYEG+
Sbjct: 230 IEELNGGEF-IVKGIKKTSKNKNPLAPFTTSTLQQDAYKKLNFATKRTMSIAQQLYEGID 288
Query: 648 LPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAH 707
+ GLITYMRTD + I+DEA + ++ I + +G ++ P++ PR FK KNAQ+AH
Sbjct: 289 IKGYGTVGLITYMRTDSVRIADEAQEACKNFINKSFGENYVPKQ-PR-VFKGKKNAQDAH 346
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRPT++ P + L ++ KLY+LIW+R +A QM + V I N +
Sbjct: 347 EAIRPTNVEITPQIAKENLKDEQYKLYTLIWNRFVASQMSSCIMDITSVSIENG--KYLL 404
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++S S V+F GF YE Y EE + + +E KQH
Sbjct: 405 KASGSLVKFDGFMKVYE--------YATEEEKEDINLPLLEEGELLQKK----NIEGKQH 452
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE ++VK LEE GIGRPSTYA + L DR YV + + L P G +V+
Sbjct: 453 FTQPPARYSEATVVKTLEEKGIGRPSTYAPIISTLLDRKYVEREKKTLKPTELGYIVNNI 512
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQ------SLHI 941
+S YF ++ D FTA+ME +LD V G W ++ ++++ A+ ++
Sbjct: 513 VSEYFKQIVDEEFTAEMEEKLDYVEEGKQNWNTVVNEFFTPLKDAIDIAEKEVAKVTIED 572
Query: 942 HQVEKMLEKT----------FGDSLF-----------ASLPNKDRSCPVCGEGTLIFKVS 980
+ EK FGD L A + D CP CG G ++ K S
Sbjct: 573 KVTDIKCEKCGKFMVIKHGRFGDFLACPGYPDCKNTKAIVEELDVKCPKCG-GNILIKRS 631
Query: 981 RFGAGYFIGCNQHPRCNYIA 1000
+ G ++ GC+ +P C++++
Sbjct: 632 KKGRKFY-GCSNYPDCDFVS 650
>gi|450070388|ref|ZP_21847522.1| DNA topoisomerase I [Streptococcus mutans M2A]
gi|449213874|gb|EMC14197.1| DNA topoisomerase I [Streptococcus mutans M2A]
Length = 705
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 247/651 (37%), Positives = 366/651 (56%), Gaps = 57/651 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES KAK I+ YLG Y+V+ S GH+RDL S S+ D+++ +
Sbjct: 21 KNLVIVESPAKAKTIEKYLGRSYKVVASVGHIRDLKKSSMSIDFDNNYEPQYINIRGKGP 80
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+ S+K A+ + LASDPDREGEAI+WH+ +L D +N RVVF+EIT+ +
Sbjct: 81 LINSLKKEAKNAKQIFLASDPDREGEAISWHLAHILDL-DLKGKN----RVVFNEITKDA 135
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A R+ID +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI D
Sbjct: 136 VKNAFVEPRQIDMDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIID 195
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI FKP+EYW+++ K F A+ +K+ + S+ + K +
Sbjct: 196 RENEIKAFKPEEYWSIDGFFKKGNK------KFQANFYGLDNKKA---KLKSNDDVKKVL 246
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+I + +F V K K+ R P PY TS+LQQDAANK+NF TM +AQ+LYEG++L
Sbjct: 247 TRIKNDDFLVDKVEKKERKRNAPLPYTTSSLQQDAANKINFRTRKTMMVAQQLYEGIRLG 306
Query: 650 DGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNA---QEA 706
GLITYMRTD IS A + + I E +G+ ++ K+ V+NA Q+A
Sbjct: 307 SNGQQGLITYMRTDSTRISPVAQNDAANYITEHFGAEYS------KHGNHVRNASGAQDA 360
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRP+++ P ++ LD+D LKLY+LIW+R +A QM A ++V++ ++
Sbjct: 361 HEAIRPSNVNHTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTVKVNL--TQNGVL 418
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
F ++ S+++F G+ A Y D D + L + G+ + +Q
Sbjct: 419 FIANGSQIKFKGYMAVYNDSDKTKV----------------LPEMIKGETVKKISANPEQ 462
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPPARYSE SL+K LEE G+GRPSTYA TL+ +Q R YV + S+ P G +V++
Sbjct: 463 HFTQPPARYSEASLIKTLEENGVGRPSTYAPTLETIQKRYYVRLVSKRFEPTELGEIVNS 522
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
+ +F ++ D FTA+ME++LD V G EW+ ++ ++ F A+ Q+EK
Sbjct: 523 LIIEFFPDIVDVKFTAEMESKLDEVEVGKEEWQKVIDQFYKPFEKEVVKAE----EQMEK 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCN 997
+ K C VCG ++ K+ R+G F C+ P C+
Sbjct: 579 IQIKDEPAGF---------DCDVCGH-PMVIKLGRYGK--FYACSNFPDCH 617
>gi|431794511|ref|YP_007221416.1| DNA topoisomerase I [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430784737|gb|AGA70020.1| DNA topoisomerase I [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 696
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 250/649 (38%), Positives = 361/649 (55%), Gaps = 45/649 (6%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++V+VES KAK I +L + Y V S GH+RDL V D+DF +
Sbjct: 2 AKTLVIVESPAKAKSISKFLSNNYTVKASMGHLRDLPKSQMGVDVDNDFEPKYIAIRGRG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+K ++ A A+ ++LASDPDREGEAIAWH + R+ FHEIT+
Sbjct: 62 DLIKELRAAAKNADRILLASDPDREGEAIAWH-----LGHLLGLDLTEKCRIEFHEITKP 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I A++ R+ID++ V A ARR LD L+G+ +SPLLWRK+ SAGRVQS A+ L+C
Sbjct: 117 AITAAIKQPRQIDSSKVDAQQARRVLDRLVGYQLSPLLWRKVKKGLSAGRVQSVAVRLVC 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI F P EYW++ A L + + FS A L Q+++L +I S E K +
Sbjct: 177 DREEEITNFIPVEYWSLTASL----ASAGGVFS--AKLVKKQNQKL---TISSEEEMKKV 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
Q + + +FQV + + ++ P+ITS+LQQ+A KLN S TM LAQ+LYEG+ L
Sbjct: 228 LQDLGNQSFQVQEVRTKEKKKQPSPPFITSSLQQEAHRKLNMSPKRTMMLAQQLYEGIDL 287
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
+ GLITYMRTD + IS+ A E + I ++YG + P E PR+ FK AQEAHE
Sbjct: 288 GKSGSIGLITYMRTDSVRISELAQGEAKEFILDQYGMDYYPPE-PRQ-FKSKGRAQEAHE 345
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + R P L L D L+LY L+W R +A QM A V + V+I +FR
Sbjct: 346 AIRPTSVLRTPDSLKEYLSRDQLRLYRLVWERFLASQMSVALVDTLTVEIEAG--GYLFR 403
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S V F G+ A YE+ +EN+ + + +++ + L + ++ KQH
Sbjct: 404 ANASTVRFPGYLAVYEEA---------QDENEEQQEGTLAANIQANEKLSVANLQEKQHF 454
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PP +Y+E SLV+K+EE GIGRPSTYA T++ + R YV + + L P G ++ L
Sbjct: 455 TEPPPKYTEASLVRKMEEEGIGRPSTYAPTIETILSRGYVAKEGKQLSPTELGDIIVTIL 514
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFS-SYCTCAQSLHIHQVEKM 947
YF E+ D FTA++E +LD++ G WK ++ D++ F+ S QS+ Q+E
Sbjct: 515 KEYFPEIVDLEFTANLEEKLDDIEEGTLPWKDVIRDFYGPFAVSLEEAEQSMSKVQIEDK 574
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ D C CG ++ K+ R+G F+ C P C
Sbjct: 575 V--------------SDEICENCGR-NMVIKMGRYGK--FLACPGFPEC 606
>gi|418125899|ref|ZP_12762807.1| DNA topoisomerase I [Streptococcus pneumoniae GA44511]
gi|418191815|ref|ZP_12828318.1| DNA topoisomerase I [Streptococcus pneumoniae GA47388]
gi|421227467|ref|ZP_15684171.1| DNA topoisomerase I [Streptococcus pneumoniae 2072047]
gi|353796680|gb|EHD77019.1| DNA topoisomerase I [Streptococcus pneumoniae GA44511]
gi|353856888|gb|EHE36855.1| DNA topoisomerase I [Streptococcus pneumoniae GA47388]
gi|395595169|gb|EJG55403.1| DNA topoisomerase I [Streptococcus pneumoniae 2072047]
Length = 677
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 252/647 (38%), Positives = 364/647 (56%), Gaps = 58/647 (8%)
Query: 355 VESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSI 414
+ES KAK I+ YLG Y+VL S GH+RDL S SV ++++ + + +
Sbjct: 1 MESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPLINDL 60
Query: 415 KVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVAL 474
K A + LASDPDREGEAI+WH+ +L L EN RVVF+EIT+ ++K A
Sbjct: 61 KKEAKKANKVFLASDPDREGEAISWHLAHILN----LDEN-DANRVVFNEITKDAVKNAF 115
Query: 475 QAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEI 534
+ R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI DRE EI
Sbjct: 116 KEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDRENEI 175
Query: 535 DEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINS 594
+ F+P+EYWTV+AV K T F A K+ + + S+ E K++ ++ S
Sbjct: 176 NAFQPEEYWTVDAVFKK------GTKQFHASFYGVDGKK---MKLTSNNEVKEVLSRLTS 226
Query: 595 ANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAA 654
+F V + K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ + G
Sbjct: 227 KDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGSGV-Q 285
Query: 655 GLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAHEAIR 711
GLITYMRTD IS A E S I +R+GS ++ K+ KVKN AQ+AHEAIR
Sbjct: 286 GLITYMRTDSTRISPVAQNEAASFITDRFGSKYS------KHGSKVKNASGAQDAHEAIR 339
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
P+ + P ++ LD+D LKLY+LIW+R +A QM A + V + + + F ++
Sbjct: 340 PSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKL--SQNGVQFAANG 397
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F G+ A Y D D +L + GD + + +QH TQP
Sbjct: 398 SQVKFDGYLAIYNDSDKN----------------KMLPDMAVGDVVKQVNSKPEQHFTQP 441
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
PARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+ + Y
Sbjct: 442 PARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKLIVEY 501
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F ++ + +FTA+ME +LD+V G +W+ ++ ++ FS + + E+ +EK
Sbjct: 502 FPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSK--------EVAKAEEEMEKI 553
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
A C VCG ++ K+ RFG F C+ P C +
Sbjct: 554 QIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 592
>gi|260583823|ref|ZP_05851571.1| DNA topoisomerase [Granulicatella elegans ATCC 700633]
gi|260158449|gb|EEW93517.1| DNA topoisomerase [Granulicatella elegans ATCC 700633]
Length = 689
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 247/652 (37%), Positives = 367/652 (56%), Gaps = 49/652 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++V+VES TKAK I+ YLG ++V+ S GH+RDL + ++++ +
Sbjct: 4 KNLVIVESPTKAKTIERYLGKNFKVVASKGHLRDLPKSKMGIDIENNYEPHYISIRGKGD 63
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
+KS+K S A+ + LASDPDREGEAI+WH+ +L + RV F+EIT+ +
Sbjct: 64 LIKSLKKEASKADAVYLASDPDREGEAISWHLAHLLGL-----DTTKPIRVEFNEITKDA 118
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
+K A + R +D +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS A+ LI D
Sbjct: 119 VKEAFKNPRNLDMDLVDAQQARRILDRLVGYTISPILWKKVKKGLSAGRVQSIAVKLIID 178
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI F P+EYWT++A K S FS + ++ + S E +
Sbjct: 179 REREIQSFVPEEYWTLDATFQK----STKKFS-----ASYYGTTTEKVELKSQDEVNQVL 229
Query: 590 QKINSAN-FQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
++I+ + F V K +K+ R P+ TS+LQQDA+NKLNF TM +AQ+LYEGV L
Sbjct: 230 KQIDEKSPFTVQKVTKKERRRNPAAPFTTSSLQQDASNKLNFRTRKTMMVAQQLYEGVSL 289
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
+ GLITYMRTD +S A E +S I YGS ++ + K + AQ+AHE
Sbjct: 290 GRQGSVGLITYMRTDSTRVSQTAKDEAKSYILSEYGSEYS---NSTRSTKVSEGAQDAHE 346
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRP+ + R P ++ L +D LKLY+LIWSR +A QM A +QV++ + VF+
Sbjct: 347 AIRPSSVMRTPDSIASYLTKDQLKLYTLIWSRFVASQMSAAVYDTVQVELEQNQQ--VFK 404
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ S ++F G+Q Y+D N + +L L GD + + +++ +QH
Sbjct: 405 ANGSTIKFAGYQKVYQD-------------NSDSKKSNVLPELVEGDTVSVQKLDPEQHF 451
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPPARYSE +L+K LEE+G+GRPSTYA T++ +Q R YV + ++ P G +V +
Sbjct: 452 TQPPARYSEATLIKTLEEIGVGRPSTYAPTIETIQKRYYVKLVAKRFEPTELGEIVHQMI 511
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
++YF + D FTA+ME+ELD + AG EW ++ ++ F + + + E +
Sbjct: 512 NNYFPNIVDTHFTAEMESELDQIEAGKQEWVQVIDRFYQPFKA--------EVDKAEIQI 563
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000
EK A +C VCG ++ K+ RFG F C+ P C + A
Sbjct: 564 EKVQIKDEPAGF-----NCEVCG-SPMVIKLGRFGK--FYACSNFPDCRHTA 607
>gi|337282009|ref|YP_004621480.1| DNA topoisomerase TopA [Streptococcus parasanguinis ATCC 15912]
gi|335369602|gb|AEH55552.1| DNA topoisomerase TopA [Streptococcus parasanguinis ATCC 15912]
Length = 695
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 246/651 (37%), Positives = 369/651 (56%), Gaps = 58/651 (8%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GH+RDL + S+ D+++ +
Sbjct: 15 NLVIVESPAKAKTIEKYLGRNYKVMASVGHIRDLKKSTMSIDFDNNYEPEYINIRGKGPL 74
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+ +K A+ + LASDPDREGEAI+WH+ +L DA +N RVVF+EIT+ ++
Sbjct: 75 INDLKKEAKKAKQVFLASDPDREGEAISWHLAHILNL-DAKEKN----RVVFNEITKDAV 129
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K A + R+ID +LV A ARR LD ++G++ISP+LW+K+ SAGRVQS AL LI DR
Sbjct: 130 KNAFKEPRQIDMDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIIDR 189
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI++FKP+EYWT++ V K T F A K+ + + ++ E K + +
Sbjct: 190 ENEINDFKPEEYWTIDGVFKK------GTKQFQASFYGIDGKK---MKLNTNEEVKAVLE 240
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+++ +F V K K+ R P PY TS++Q DAANK+NF TM +AQ+LYEG+ +
Sbjct: 241 RLDGKDFTVEKVEKKERRRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS 300
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQEAH 707
G GLITYMRTD IS A E + I +R+G ++ K+ +VKN AQ+AH
Sbjct: 301 GV-QGLITYMRTDSTRISPVAQNEAANFIVDRFGEKYS------KHGSRVKNASGAQDAH 353
Query: 708 EAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVF 767
EAIRP+ + P ++ LD+D LKLY+LIW+R +A QM A + V +G + +
Sbjct: 354 EAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMNVRLGQ--NGVQY 411
Query: 768 RSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQH 827
++ S+V+F G+ A Y D D +L + GD + + +QH
Sbjct: 412 TANGSQVKFDGYLAIYNDSDKN----------------KMLPDMVEGDIVKQVNSKPEQH 455
Query: 828 HTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAF 887
TQPPARYSE +L+K LEE G+GRPSTYA T++ +Q R YV + ++ P G +V+
Sbjct: 456 FTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVKLVAKRFEPTELGEIVNKL 515
Query: 888 LSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKM 947
+ +F ++ + +FTA+ME +LD+V G EW+ ++ ++ FS + + E+
Sbjct: 516 IVEFFPDIVNVTFTAEMEGKLDDVELGKEEWQKVIDAFYKPFSK--------EVAKAEEE 567
Query: 948 LEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
+EK A C VCG ++ K+ RFG F C+ P C +
Sbjct: 568 MEKIQIKDEPAGF-----DCEVCG-SPMVIKLGRFGK--FYACSNFPDCRH 610
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,402,788,728
Number of Sequences: 23463169
Number of extensions: 724680288
Number of successful extensions: 2294710
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6503
Number of HSP's successfully gapped in prelim test: 5848
Number of HSP's that attempted gapping in prelim test: 2210276
Number of HSP's gapped (non-prelim): 37329
length of query: 1158
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 1004
effective length of database: 8,745,867,341
effective search space: 8780850810364
effective search space used: 8780850810364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 83 (36.6 bits)