BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001100
(1158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4UM42|TOP1_RICFE DNA topoisomerase 1 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=topA PE=3 SV=1
Length = 776
Score = 636 bits (1641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/784 (42%), Positives = 486/784 (61%), Gaps = 23/784 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGEAI+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGEAISWHVAEVIKEKNKVKSDDFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++DANLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDANLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + +AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTHVNDQKLEKFSIINEKDAKDLTEK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S NF V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQNFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKNYGDKYLP-NSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L L++D KLY LIW RT+ACQM+ + + + + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLEKDYYKLYELIWKRTIACQMENVIMDLVVASLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK +PL E+ QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESVDDEAEEENKMLPPLKEQEPLKTKEIIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV+++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVSLEKKRFMPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 526 FKKYVEYDFTAGLENELDEIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF+ NK+ ++CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFSE--NKESKACPSCKTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ +E K++G E + LK GPYG YVQLGE PKR+ V + +
Sbjct: 642 NDGDLAATPNENKVLGTDKDGIE-IYLKKGPYGPYVQLGEQEGKVKPKRSPVPASLNQND 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITLE AL+LL P+ +G H G+ IM+ + G +++ S+PK +++L+ A
Sbjct: 701 ITLEMALKLLSLPLKIGIHKDSGEEIMIGYGKFGPYIKYMGKFISIPKKYDFLNLSLDDA 760
Query: 1131 LEFL 1134
++ +
Sbjct: 761 MKLI 764
>sp|Q1RIM1|TOP1_RICBR DNA topoisomerase 1 OS=Rickettsia bellii (strain RML369-C) GN=topA
PE=3 SV=1
Length = 800
Score = 634 bits (1635), Expect = e-180, Method: Compositional matrix adjust.
Identities = 333/788 (42%), Positives = 490/788 (62%), Gaps = 24/788 (3%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++FSM +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVIPDENFSMKYDISEKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AE++ LA+DPDREGE+I+WHI E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIIKDAKKAESVYLATDPDREGESISWHIAEVIKEKNKVKSDDFFKRVAFNEITKKAIT 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAIENPRKLDNNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + EAKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMLNSNNE-----LFTAKLTHINDQKLEKFSITNDKEAKDLTEK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S NF V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQNFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A EIR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAVDEIRKLINKDYGDKYLP-SSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I +P L L++D KLY LIW RT+ACQM+ + + + + ++ + R++
Sbjct: 356 PTNINYIPNDLKEKLEKDYYKLYELIWKRTIACQMENVIMDLVNATLASENKEYLARANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK + L E+ QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESIDDEAEEENKMLPPLKEQEHLKTKEIIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYA+ L VLQDR YVT++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYATILSVLQDRKYVTLEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++W+ F+ +I ++ +++
Sbjct: 526 FKKYVEYDFTAGLENELDEIAAGKLEWKSALGNFWNGFNHNIESVNKQNITEIISYVQQA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
+F NKD + CP C G L K+ +FGA F+ C+ +P CN+ + G+D+ E
Sbjct: 586 LDYHIFGE--NKDSKVCPSCKTGELSLKLGKFGA--FLACSNYPECNFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYL-PKRASVSHIKDVD 1069
+ V+E K++G E + LK GPYG Y+Q GE + PKR+ + + +
Sbjct: 642 ADGEAKDIVNENKVLGKDKEGIE-IYLKKGPYGPYIQYGEQVDSKIKPKRSPLPAGLNQN 700
Query: 1070 SITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEK 1129
ITL+ AL+LL P+ +GNH + G+ +++ + G +++ S+PK +++L+
Sbjct: 701 DITLDMALKLLSLPLKIGNHKESGEEVLVGYGKFGPYIKYMGKFISIPKKYDFLNLSLDD 760
Query: 1130 ALEFLSGK 1137
A++ + K
Sbjct: 761 AMKLIEEK 768
>sp|Q68X45|TOP1_RICTY DNA topoisomerase 1 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=topA PE=3 SV=1
Length = 779
Score = 619 bits (1596), Expect = e-176, Method: Compositional matrix adjust.
Identities = 333/784 (42%), Positives = 483/784 (61%), Gaps = 23/784 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD +F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDKNFAMEYDISDKASKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AE + LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKYARKAEAVYLATDPDREGESISWHVAEVIKEKNKVESDDFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LICDRE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICDRE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + EAKD+ +K
Sbjct: 183 DEIERFKAEEYWDISLKMQNSNNE-----LFTAKLTHVNDQKLKKFSIINEKEAKDLTRK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ F V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKLQKFYVEKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG+ + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKNYGNKYLP-INPRIYQSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L L++D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDNLKQKLEKDYYKLYELIWQRTIACQMENVIMDLVIANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK + + EV +H T+P
Sbjct: 416 SIIAFDGFYKV----------YRESLDDEDEEDNKMLPPLKAQEHIKTKEVIPNKHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YVT++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVTLEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F++ I ++ L+K
Sbjct: 526 FKKYVEYDFTAGLENELDEIAAGKLEWKTSLNNFWSGFNNNIESVNEQKITEIINYLQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKVCPSCKTGQLSLKLGKFGA--FLACSNYPECTFKKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
D +T +++ K++G E + LK+GPYG Y+QLGE PKR V
Sbjct: 642 DEGNLSTILNDNKILGTDKDGVE-IYLKTGPYGPYIQLGEQCGKVKPKRTPVPTNLKQSE 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITLE AL+LL P+ +G H G+ I++ ++ G +++ SVPK ++ L+ A
Sbjct: 701 ITLEVALKLLSLPLKIGIHKDSGEEIIIGYSKFGPYIKYMCKFISVPKKYDFLNLNLDDA 760
Query: 1131 LEFL 1134
++ +
Sbjct: 761 IKLI 764
>sp|Q92IH1|TOP1_RICCN DNA topoisomerase 1 OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=topA PE=3 SV=1
Length = 776
Score = 617 bits (1592), Expect = e-175, Method: Compositional matrix adjust.
Identities = 328/784 (41%), Positives = 479/784 (61%), Gaps = 23/784 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I A+ + LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGESISWHVAEVIKEKNQVKSDDFFKRVAFNEITKKAII 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + + + F A LTH ++L + SI + AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTHVNDQKLEKFSIINEKNAKDLTKK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ S F V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSHKFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKSYGDKYLP-TSPRIYKSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L LD+D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLDKDYYKLYELIWKRTIACQMENVIMDLVVANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK +PL V QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESMDDEAEEENKMLPPLKEQEPLKTKAVIPNQHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 526 FKKYVEYDFTAGLENELDAIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKA 585
Query: 952 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1010
LF NK+ + CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFGE--NKESKICPSCNTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1011 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1070
+ + +E K++G E + LK GPYG Y+QLG+ PKR+ V + +
Sbjct: 642 NEGEPAAMPNENKVLGTDKDGVE-IYLKKGPYGPYIQLGKQEGKVKPKRSPVPASLNQND 700
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
ITL+ AL+LL P+ +G H + IM+ + G +++ SV K +++L+ A
Sbjct: 701 ITLDIALKLLSLPLKIGIHKDSDEEIMIGYGKFGPYIKYMGQFISVQKKYDFLNLSLDDA 760
Query: 1131 LEFL 1134
++ +
Sbjct: 761 MKLI 764
>sp|Q9ZDK2|TOP1_RICPR DNA topoisomerase 1 OS=Rickettsia prowazekii (strain Madrid E)
GN=topA PE=3 SV=1
Length = 776
Score = 614 bits (1583), Expect = e-174, Method: Compositional matrix adjust.
Identities = 332/783 (42%), Positives = 480/783 (61%), Gaps = 21/783 (2%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD +F M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDKNFLMEYDISDKAGKYV 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
+I AE + LA+DPDREGE+I+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKEARKAEVVYLATDPDREGESISWHVAEVIKEKNKVESDDFFKRVAFNEITKKAIM 122
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D NLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LICDRE
Sbjct: 123 NAVANPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICDRE 182
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FK +EYW + K ++ + D F+ A LTH ++L + SI + EAKD+ QK
Sbjct: 183 DEIERFKSEEYWDISL---KMQNSNNDLFT--AKLTHVNDQKLKKFSIINEKEAKDLTQK 237
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ F V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKLQKFYVEKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
T GLITYMRTDG+ +S++A +IR LI + YG+ + P + PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKNYGNQYLPIK-PRIYQSKVKNAQEAHEAIR 355
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT+I P L L++D KLY LIW RT+ACQM+ + + ++ + ++ + +++
Sbjct: 356 PTNITYTPDSLKQKLEKDYYKLYELIWHRTIACQMENVIMDLVIANLASENKEYLAKANG 415
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S + F GF Y+E+ +++ E +L LK + + EV +H T+P
Sbjct: 416 SIIAFDGFYKV----------YRESLDDEDEEDNKMLPPLKEQEHIKTKEVIPNKHFTEP 465
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV ++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGF 525
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F + +Y FTA +E ELD ++AG EWK L ++W F+ I ++ L+K
Sbjct: 526 FKKYVEYDFTAGLENELDEIAAGKLEWKTALNNFWRGFNHNIESVNEQKITEIINYLQKA 585
Query: 952 FGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEED 1011
LF + + CP C G L K+ +FGA F+ C+ +P C + + G+D+ ED
Sbjct: 586 LDYHLFGE-DKESKVCPSCKTGQLSLKLGKFGA--FLACSNYPECTFKKSIVSGNDNNED 642
Query: 1012 TLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSI 1071
+T +++ K++G E + LK GPYG Y+QLGE PKR V I
Sbjct: 643 EGDPSTILNDNKILGTDQDGVE-IYLKKGPYGPYIQLGEQCGKVKPKRTPVPANLKQSEI 701
Query: 1072 TLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKAL 1131
TLE AL+LL P+ +G H G+ I++ ++ G +++ SVPK +++L A+
Sbjct: 702 TLEIALKLLNLPLKIGIHKDSGEEIIIGYSKFGPYIKYMCKFISVPKKYDFLNLSLNDAM 761
Query: 1132 EFL 1134
+ +
Sbjct: 762 KLI 764
>sp|Q9X3X7|TOP1_ZYMMO DNA topoisomerase 1 OS=Zymomonas mobilis subsp. mobilis (strain ATCC
31821 / ZM4 / CP4) GN=topA PE=3 SV=3
Length = 1212
Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust.
Identities = 304/686 (44%), Positives = 411/686 (59%), Gaps = 52/686 (7%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+VVVES KAK I+ YLG Y+VL SYGH+RDL ++ GSV PD+ FSMVW+ L
Sbjct: 3 LVVVESPAKAKTIEKYLGSGYQVLASYGHIRDLPSKDGSVNPDNGFSMVWQNYPDKAHRL 62
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K+I+ A+ +++LILA+DPDREGEAI+WHI+E+L+ + L ++ V RV F+ IT+A++
Sbjct: 63 KAIEDAVKESDSLILATDPDREGEAISWHILELLKTKKLLPDD--VERVTFNAITKAAVT 120
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A+ R++D +L+ AYLARRALDYL+GF +SP+LWRKLPG +SAGRVQS AL L+ DRE
Sbjct: 121 DAMAHPRQLDNDLINAYLARRALDYLVGFTLSPILWRKLPGAKSAGRVQSVALRLVVDRE 180
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI+ FKPQEYW+VEA ++ D+ F + L ++ ++L +LSI T+A+ +
Sbjct: 181 QEIEGFKPQEYWSVEADME------ADSIGFTSRLIQWRGQKLEKLSIADKTQAEAAQSD 234
Query: 592 INSANFQVIKNSKRSMVRKNPTP-YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+ S +F + N + V +NP P + TSTLQQ+AA KL F+A++TM+LAQ LYE
Sbjct: 235 VESGHF-TVSNVETKPVSRNPQPPFTTSTLQQEAARKLGFAASHTMRLAQSLYE------ 287
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTDG+ + + A R I +RY + P++ PR+Y K KNAQEAHEAI
Sbjct: 288 ---EGLITYMRTDGVQMDESAIAAARKTITQRYDGGYVPDK-PRQYQVKAKNAQEAHEAI 343
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPTD R A SG D +LY LIW R +A QM A + + VD+ + V R +
Sbjct: 344 RPTDFSRDKAA-SG----DHARLYELIWKRALASQMASAKLERTTVDLTDGTGQNVLRVT 398
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRH--EAFAILNSLKTGDPLYLGEVELKQHH 828
V F GF YE+ ++ NDR E A L L+ GD EV QH
Sbjct: 399 GQVVLFSGFLTLYEE-------SADDNANDRDGKEGRARLPLLRAGDAPLKKEVRADQHF 451
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RYSE SLVKK+E+LGIGRPSTYAS ++VL+DR YVT++ P GR+++AFL
Sbjct: 452 TQPPPRYSEASLVKKMEDLGIGRPSTYASVIQVLKDRAYVTLERNRFIPSEAGRLLTAFL 511
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F Y FTA +E LD +S G +W+ +L +W F + L
Sbjct: 512 ERFFERYVSYDFTAGLEDSLDEISGGRADWQKVLDAFWHDFKPKTAEVMEQQPSAITAEL 571
Query: 949 EKTFGDSLFASLPNKD-----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTL 1003
+K LF P+K R CP C G L K RFGA FI C+ +P C Y
Sbjct: 572 DKFLEPWLF---PDKGDGHDPRECPSCHTGRLALKGGRFGA--FIACSNYPECKYTRGFG 626
Query: 1004 YGDDDEEDTLQRNTNVDEPKLIGHHP 1029
G+D +D +EP L+G+ P
Sbjct: 627 QGEDGVDD--------NEPVLLGYMP 644
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVD----SITLEDAL 1077
P+ IG HP S + ++ +G YG Y+ G + +S + D+D + L +A
Sbjct: 983 PREIGLHPESGKMIIAGTGRYGPYLNC----DGKYARLSSTEELLDIDIDRAVVKLAEAA 1038
Query: 1078 E--------LLRYPVNL-GNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
+ L R P+ + G+ P +P+ L R G V T AS+PK+ P +T E
Sbjct: 1039 QNKGRTGATLSREPLKVFGDSPVTEKPVQLMNGRYGPYVTDGETNASLPKDTTPESLTFE 1098
Query: 1129 KALEFLSGK 1137
+AL L +
Sbjct: 1099 EALALLEAR 1107
Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 1035 VLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQ 1094
V ++G +G Y+QLGE G KR SV + + A LL P +G HP+ G+
Sbjct: 938 VTRRTGRFGPYIQLGE---GKNAKRVSVPRDVNPREVDFSLASRLLALPREIGLHPESGK 994
Query: 1095 PIMLRLARAG 1104
I+ R G
Sbjct: 995 MIIAGTGRYG 1004
>sp|Q87AQ6|TOP1_XYLFT DNA topoisomerase 1 OS=Xylella fastidiosa (strain Temecula1 / ATCC
700964) GN=topA PE=3 SV=1
Length = 815
Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust.
Identities = 311/849 (36%), Positives = 450/849 (53%), Gaps = 105/849 (12%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V P++ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPENGFAMRYDLIDKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A A+++ LA+DPDREGEAI+WHI E+L+++ L + + R+VF EIT +
Sbjct: 63 HVEAITKAAKTADSIYLATDPDREGEAISWHISEILKERGLLKDK-PMQRIVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+Q R I ++LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAIQKPRMIASDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F +EYW++ A H F A L K+ Q +I A +
Sbjct: 182 REEEIEAFITREYWSIHAECTHPAQH------FSAKLIKLDGKKFEQFTITDSDTAAAAQ 235
Query: 590 QKINSA---NFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
++I A + + + R+ P+ITSTLQQ+A+ KL F+ TM++AQKLYEG+
Sbjct: 236 RRIQQAAQGRLHITDVTNKERKRRPAPPFITSTLQQEASRKLGFTTRKTMQIAQKLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L + + GLITYMRTD +++S +A EIR +I YG++ P++ P Y K KNAQEA
Sbjct: 296 ALGEEGSVGLITYMRTDSVNLSLDALSEIRDIIARDYGTNALPDK-PNVYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R P ++ L + +LY L+W RT+A QM PA + VD+ +E V
Sbjct: 355 HEAVRPTSALRTPTQVAPYLSNEEHRLYELVWKRTVASQMIPAILNTTSVDLAAGNEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ + V GF A YE+ K+N+ + + L +KTG+ + L + +Q
Sbjct: 414 FRATGTTVVVQGFLAVYEE-------GKDNKNAEDDDEGRKLPVMKTGENVPLERILTEQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RY+E +LVK LEE GIGRPSTYAS ++ L R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRYTEAALVKALEEYGIGRPSTYASIIQTLLFRKYVDMEGRSFRPTDIGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYC---------TCAQ 937
FLS +F++ DY FTA +E ELD +S G EW L+ +W F T A
Sbjct: 527 FLSSHFTQYVDYDFTAHLEDELDAISRGEEEWIPLMKKFWVPFKELVEDKKDSLDKTDAG 586
Query: 938 SLHIHQVEKMLEKT-------FGDSL------------FASL-PNKDRSCPVCGEGTLIF 977
S+ + ++ K FG + FASL PN+ E +F
Sbjct: 587 SVRLLGIDPTSGKEVSARIGRFGPMVQIGTVDDEEKPRFASLRPNQSIYSISLEEAIELF 646
Query: 978 KVSR-----------FGAGYFIGCNQHPRCNYIAKTLYGDDD--------------EEDT 1012
K+ R G G F G Y+ +L +DD E++
Sbjct: 647 KMPRVLGEDQSQQVSVGIGRF-GPFAKRGSTYV--SLKSEDDPYTIDLARATLLINEKEE 703
Query: 1013 LQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSIT 1072
+ RN ++I S+ +VL +G +G Y+ G+ G +PK ++ S+T
Sbjct: 704 IARN------RIIKDFENSQIQVL--NGRFGPYISDGK-LNGKIPKD------REPASLT 748
Query: 1073 LEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALE 1132
LE+A +LL +N G + AR FS + T K T KA +
Sbjct: 749 LEEAQQLL---INTG-----------KPARKNFSTKKTATKNETRKQTTKKRTTDAKATK 794
Query: 1133 FLSGKDVRR 1141
+S K V++
Sbjct: 795 KVSDKPVKK 803
>sp|Q9PEV8|TOP1_XYLFA DNA topoisomerase 1 OS=Xylella fastidiosa (strain 9a5c) GN=topA PE=3
SV=1
Length = 815
Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust.
Identities = 292/807 (36%), Positives = 434/807 (53%), Gaps = 59/807 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +++VES KAK I YLG + VL SYGHVRDL + G+V P++ F+M +++
Sbjct: 3 KHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPENGFAMRYDLIDKNEK 62
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
H+++I A A+++ LA+DPDREGEAI+WHI E+L+++ L + + R+VF EIT +
Sbjct: 63 HVEAITKAAKTADSIYLATDPDREGEAISWHISEILKERGLLKDK-PMQRIVFTEITPRA 121
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
IK A+Q R I ++LV A ARRALDYL+GFN+SP+LWRK+ SAGRVQS AL +I +
Sbjct: 122 IKEAIQKPRMIASDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVE 181
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE EI+ F +EYW++ A H F A L ++ Q +I A +
Sbjct: 182 REEEIEAFITREYWSIHAECAHPAQH------FSAKLIKLDGQKFEQFTITDSDTAAAAQ 235
Query: 590 ---QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
Q++ + + + R+ P+ITSTLQQ+A+ KL F+ TM++AQKLYEG+
Sbjct: 236 RRIQQVAQGRLHITDVTNKERKRRPAPPFITSTLQQEASRKLGFTTRKTMQIAQKLYEGI 295
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
L + + GLITYMRTD +++S +A EIR +I YG++ P++ P Y K KNAQEA
Sbjct: 296 ALGEEGSVGLITYMRTDSVNLSLDALSEIRDIIARDYGTNALPDK-PNVYTTKSKNAQEA 354
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEA+RPT R P ++ L + +LY L+W R +A QM PA + VD+ +E V
Sbjct: 355 HEAVRPTSALRTPTQVAPYLSNEEHRLYELVWKRAVASQMIPAILNTTSVDLAAGNEH-V 413
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
FR++ + V GF A YE+ K+N+ + + L +KTG+ + L + +Q
Sbjct: 414 FRATGTTVVVQGFLAVYEE-------GKDNKNAEDDDEGRKLPVMKTGENVPLERILTEQ 466
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H TQPP RY+E +LVK LEE GIGRPSTYAS ++ L R YV ++ R P GR VS
Sbjct: 467 HFTQPPPRYTEAALVKALEEYGIGRPSTYASIIQTLLFRKYVDMEGRSFRPTDIGRAVSK 526
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
FL+ +F+ DY FTA +E ELD +S G EW L+ +W F + +
Sbjct: 527 FLASHFTRYVDYDFTAHLEDELDAISRGEEEWIPLMKKFWVPFKEL--------VEDKKD 578
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGC---NQHPRCNYI--AK 1001
L+KT S+ + V G ++ RFG IG + PR + +
Sbjct: 579 SLDKTDAGSVRLLGIDPTSGKEVSG------RIGRFGPMVQIGTVDDEEKPRFASLRPNQ 632
Query: 1002 TLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKV-LLKSGPYG----FYVQLGEDRTGYL 1056
++Y EE P+++G + + V + + GP+ YV L + Y
Sbjct: 633 SIYSISLEEAI----ELFKMPRVLGEDQSQQVSVGIGRFGPFAKRGSTYVSLKSEDDPYT 688
Query: 1057 PKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASV 1116
A + + I ++ + R N N I + R G + + +
Sbjct: 689 IDLARATFL-----INEKEEIARNRIIKNFEN-----SQIQVLNGRFGPYISDGKLNGKI 738
Query: 1117 PKNMKPNDVTLEKALEFL--SGKDVRR 1141
PK+ +P +TLE+A + L +GK R+
Sbjct: 739 PKDREPASLTLEEAQQLLIDTGKPARK 765
>sp|Q9KA23|TOP1_BACHD DNA topoisomerase 1 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=topA PE=3 SV=1
Length = 690
Score = 446 bits (1148), Expect = e-124, Method: Compositional matrix adjust.
Identities = 262/678 (38%), Positives = 372/678 (54%), Gaps = 60/678 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I YLG Y V S GHVRDL V +D++S + L
Sbjct: 5 LVIVESPAKAKTIGKYLGKKYTVKASMGHVRDLPKSQMGVDIEDEYSPRYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A + + LA+DPDREGEAIAWH+ L + + RVVF+EIT+ +IK
Sbjct: 65 KELKSAAKKVKRVYLAADPDREGEAIAWHLAHSLD-----IDETSECRVVFNEITKQAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A ++ R I+ +LV A ARR LD L+G+NISPLLW+K+ SAGRVQS A+ +I DRE
Sbjct: 120 DAFKSPRPINMDLVDAQQARRVLDRLVGYNISPLLWKKVKKGLSAGRVQSVAVKMIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI F+P+EYW+++ + +LD F A K++ + S + ++ K
Sbjct: 180 KEIQAFEPEEYWSIQG------TFALDGEPFEAKFYGTNGKKVE---LKSEDDVNNVLAK 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ F V K+ R +P+ TS+LQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 231 LKGDQFHVDSVQKKERKRNPVSPFTTSSLQQEAARKLNFRAKKTMMLAQQLYEGIDLGKE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD ISD A E + I ++G +A + K KK K +Q+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISDTAKAETKEYIESKFGKEYA--QNGTKAVKKDKKSQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R P L L D L+LY LIW R +A QM PA + + VD+ N E ++FR++
Sbjct: 349 PTSVERDPKSLKEYLSRDQLRLYKLIWERLVASQMAPAIMDTMTVDLSN--EGVLFRATG 406
Query: 772 SRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
S+V+F GF Y E D G +E DR +L +L+ G + E+E QH TQ
Sbjct: 407 SKVKFPGFMKVYIEGNDEG------KKEEDR-----LLPNLQEGQTVTKEEIEPSQHFTQ 455
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK +EELGIGRPSTYA TL +Q R YV + R P G +V ++
Sbjct: 456 PPPRYTEARLVKTMEELGIGRPSTYAPTLDTIQKRGYVALDERRFVPTELGEIVLELMTE 515
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE----- 945
+F E+ D FTA ME +LD++ G +W ++ D++ F A+ + +VE
Sbjct: 516 FFPEILDVEFTAKMEDDLDSIEEGKQQWIKIIDDFYKGFEERLKVAEE-EMKEVEIKDEP 574
Query: 946 --KMLEKTFGDSLF-----------ASLPNKDRS----------CPVCGEGTLIFKVSRF 982
+M EK + ++ ++ P+ + CP C +G ++ + S+
Sbjct: 575 TGEMCEKCGHEMVYKMGRYGKFMACSNFPDCRNTKPIVKEIGVKCPKCEKGEIVERKSK- 633
Query: 983 GAGYFIGCNQHPRCNYIA 1000
F GCNQ+P C++++
Sbjct: 634 KRRVFYGCNQYPECDFVS 651
>sp|Q8NWZ9|TOP1_STAAW DNA topoisomerase 1 OS=Staphylococcus aureus (strain MW2) GN=topA
PE=3 SV=2
Length = 689
Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKSK------FNAKFLHYKNK---PFKLKTKKDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>sp|Q6G9W3|TOP1_STAAS DNA topoisomerase 1 OS=Staphylococcus aureus (strain MSSA476)
GN=topA PE=3 SV=1
Length = 689
Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKSK------FNAKFLHYKNK---PFKLKTKKDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>sp|Q6GHI5|TOP1_STAAR DNA topoisomerase 1 OS=Staphylococcus aureus (strain MRSA252)
GN=topA PE=3 SV=1
Length = 689
Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKSK------FNAKFLHYKNK---PFKLKTKKDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>sp|Q7A5Y5|TOP1_STAAN DNA topoisomerase 1 OS=Staphylococcus aureus (strain N315) GN=topA
PE=1 SV=1
Length = 689
Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKSK------FNAKFLHYKNK---PFKLKTKKDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>sp|Q99UM1|TOP1_STAAM DNA topoisomerase 1 OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=topA PE=3 SV=1
Length = 689
Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKSK------FNAKFLHYKNK---PFKLKTKKDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>sp|Q06AK7|TOP1_STAAU DNA topoisomerase 1 OS=Staphylococcus aureus GN=topA PE=3 SV=1
Length = 689
Score = 444 bits (1142), Expect = e-123, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 362/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKS------KFNAKFLHYKNK---PFKLKTKKDVEKITT 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I +YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKAEAKQYITNKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>sp|Q5HGI2|TOP1_STAAC DNA topoisomerase 1 OS=Staphylococcus aureus (strain COL) GN=topA
PE=3 SV=1
Length = 689
Score = 443 bits (1140), Expect = e-123, Method: Compositional matrix adjust.
Identities = 254/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKS------KFNAKFLHYKNK---PFKLKTKKDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKVEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C +CG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEICG-SPMVIKMGRYGK--FMACSNFPDC 603
>sp|Q2FZ32|TOP1_STAA8 DNA topoisomerase 1 OS=Staphylococcus aureus (strain NCTC 8325)
GN=topA PE=3 SV=2
Length = 689
Score = 443 bits (1140), Expect = e-123, Method: Compositional matrix adjust.
Identities = 254/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKS------KFNAKFLHYKNK---PFKLKTKKDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKVEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C +CG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEICG-SPMVIKMGRYGK--FMACSNFPDC 603
>sp|Q2FHI8|TOP1_STAA3 DNA topoisomerase 1 OS=Staphylococcus aureus (strain USA300)
GN=topA PE=3 SV=2
Length = 689
Score = 443 bits (1140), Expect = e-123, Method: Compositional matrix adjust.
Identities = 254/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYWT+E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWTIEGEFRYKKS------KFNAKFLHYKNK---PFKLKTKKDVEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKVEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQTIKFKGFMTLYVETKDDSDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C +CG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEICG-SPMVIKMGRYGK--FMACSNFPDC 603
>sp|Q2YXL8|TOP1_STAAB DNA topoisomerase 1 OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=topA PE=3 SV=2
Length = 689
Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust.
Identities = 254/646 (39%), Positives = 361/646 (55%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + REI+ NLV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW +E K+S F A H+++K + + + + I
Sbjct: 179 ENEIRNFKPEEYWIIEGEFRYKKS------KFNAKFLHYKNK---PFKLKTKKDIEKITA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 230 ALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKK 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD ISD A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTIGLITYMRTDSTRISDTAKAEAKQYITDKYGESYTSK---RKASGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RP+ R P + L +D +LY LIW R +A QM PA + + +DI D I FR++
Sbjct: 346 RPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGD--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + KEN+ L L+ GD + ++E QH+TQ
Sbjct: 404 GQTIKFKGFMTLYVETKDDIDSEKENK----------LPKLEQGDKVTATQIEPAQHYTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVHEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ ++S F VE+ E+
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFK-----------QDVERAEEE 562
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 563 MEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>sp|Q8CSU3|TOP1_STAES DNA topoisomerase 1 OS=Staphylococcus epidermidis (strain ATCC
12228) GN=topA PE=3 SV=1
Length = 689
Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust.
Identities = 253/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKHAKKAKKIFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KDSFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW++E K+S F A H+++K + + + + I +
Sbjct: 179 ENEIRNFKPEEYWSIEGEFRYKKS------KFTAKFLHYKNK---PYKLNNKDDVQRITE 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+N F++ +++ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ALNGDQFEITNVNRKEKTRYPAHPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISTSAKSEAQQYINDKYGEQYVSQ---RKSSGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ D I FR++
Sbjct: 346 RPTSTMRTPDDMKAFLTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++END+ L L GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKENDKENK---LPQLDKGDKVTATKIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFIPTELGEIVYEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ D+++ F A+S + ++E E
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDMNWRKVIGDFYNSFKQDVERAES-EMEKIEIKDEP 572
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 573 AGED------------CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>sp|Q5HPU2|TOP1_STAEQ DNA topoisomerase 1 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=topA PE=3 SV=1
Length = 689
Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust.
Identities = 253/646 (39%), Positives = 363/646 (56%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+ + LASDPDREGEAIAWH+ ++L+ +D+ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKHAKKAKKIFLASDPDREGEAIAWHLSKILELEDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KDSFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW++E K+S F A H+++K + + + + I +
Sbjct: 179 ENEIRNFKPEEYWSIEGEFRYKKS------KFTAKFLHYKNK---PYKLNNKDDVQRITE 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+N F++ +++ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ALNGDQFEITNVNRKEKTRYPAHPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A E + I ++YG + + RK K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISTSAKSEAQQYINDKYGEQYVSQ---RKSSGK-QGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ D I FR++
Sbjct: 346 RPTSTMRTPDDMKAFLTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQND--IKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K+++END+ L L GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKENDKENK---LPQLDKGDKVTATKIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFIPTELGEIVYEQVKE 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ D+++ F A+S + ++E E
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDMNWRKVIGDFYNSFKQDVERAES-EMEKIEIKDEP 572
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 573 AGED------------CEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>sp|P73810|TOP1_SYNY3 DNA topoisomerase 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=topA PE=3 SV=1
Length = 898
Score = 436 bits (1120), Expect = e-121, Method: Compositional matrix adjust.
Identities = 296/828 (35%), Positives = 437/828 (52%), Gaps = 99/828 (11%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSG--------------SVRPDDDF 397
+V+VES TKA+ I+ YL Y V S GHVRDL A + V +D F
Sbjct: 4 LVIVESPTKARTIRNYLPQDYRVEASMGHVRDLPASAEEVPAAYKDKSWANLGVNVEDHF 63
Query: 398 SMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV 457
S ++ +P + +K ++ AL A+ +ILA+D DREGE+I+WH++++LQ + + +
Sbjct: 64 SPLYVIPKSKKKVVKELQTALKNADEVILATDEDREGESISWHLLQLLQPK------VPI 117
Query: 458 ARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAG 517
R+VFHEIT+ +I+ AL+ R+ID NLV A RR LD L+G+ +SPLLW+K+ SAG
Sbjct: 118 KRMVFHEITQEAIRSALENCRDIDENLVHAQETRRILDRLVGYTLSPLLWKKIAWGLSAG 177
Query: 518 RVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRL--- 574
RVQS A+ LI RE FK YW ++A L++ ++ F A L +L
Sbjct: 178 RVQSVAVRLIVQRERARRAFKTAGYWDLKAELEQNKN------PFQAKLMTLGGTKLANG 231
Query: 575 -------------NQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQ 621
Q+ + +A +++++ + V+ ++ VRK P+ TSTLQ
Sbjct: 232 SDFDPNTGALLPDKQVVVLDEAQAIALKERLTGKPWAVVNTEEKPGVRKPSPPFTTSTLQ 291
Query: 622 QDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFE 681
Q+A KL SA TM++AQKLYE G ITYMRTD +H+SD+A R+ + +
Sbjct: 292 QEANRKLGISARDTMRVAQKLYE---------EGYITYMRTDSVHLSDQAVTAARNCVQQ 342
Query: 682 RYGSHH-APEEGPRKYFKKVKNAQEAHEAIRPTDIR-RLPAMLSGLLDEDCLKLYSLIWS 739
YG + +P+ P++Y K K AQEAHEAIRP R+P +GL D + L LY LIW
Sbjct: 343 MYGKEYLSPQ--PKQYTTKSKGAQEAHEAIRPAGTEFRIPNQ-TGLKDRE-LALYELIWK 398
Query: 740 RTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAY----EDVDAGAIRYKE 795
RT+ACQM A + Q+ V + D FR++ R++F G+ AY +D DA E
Sbjct: 399 RTVACQMADARITQLSVLLKVEDAE--FRAAGKRIDFPGYFRAYVEGSDDPDAAL----E 452
Query: 796 NEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTY 855
N+E IL LK GD E++ H TQPPARY+E SLVK LE G+GRPSTY
Sbjct: 453 NQE-------VILPPLKVGDRPNCREIDTVGHETQPPARYTEASLVKTLESEGVGRPSTY 505
Query: 856 ASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGL 915
AS + + DR YV ++S+ L P F V + L +F ++ D FT+ ME +LD ++ G
Sbjct: 506 ASIIGTIIDRGYVQMRSKALTPTFTAFAVVSLLESHFPDLVDTGFTSRMEQKLDEIAIGK 565
Query: 916 TEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTL 975
T+W L ++ +S +QV K+ + ++ ++ ++ + V
Sbjct: 566 TQWLPYLQGFF--------LGESGLENQV-KVRQDQIDPAIAKAIELENLAAKV------ 610
Query: 976 IFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD--DEEDTLQRNTNVDEPKLIGHHPASKE 1033
K+ +FG I + I + L D E+ + + P +G HP + E
Sbjct: 611 --KIGKFGPYIEIPQGEEIITASIPQDLTPADLNPEQVAVLLKQKTEGPDKVGIHPETGE 668
Query: 1034 KVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKD 1092
+ + G YG YVQLGE PKR S+ + +TLE A+ LL P NLG HP+
Sbjct: 669 PIFILIGAYGPYVQLGEATEENKKPKRTSLPKGVKPEDVTLEMAVGLLALPRNLGEHPES 728
Query: 1093 GQPIMLRLARAGFSVRHRRTIASVP-KNMKPND----VTLEKALEFLS 1135
G+ I L R G V H + +++K +D +TLE+ALE L+
Sbjct: 729 GKNIKASLGRFGPYVVHDQGKDGKDYRSLKGDDDVLTITLERALELLA 776
>sp|Q4L5V2|TOP1_STAHJ DNA topoisomerase 1 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=topA PE=3 SV=1
Length = 689
Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust.
Identities = 247/646 (38%), Positives = 361/646 (55%), Gaps = 46/646 (7%)
Query: 351 SVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTH 410
++V+VES KAK I+ YLG Y+V+ S GHVRDL V +D++ +
Sbjct: 4 NLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDVEDNYEPKYITIRGKGPV 63
Query: 411 LKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASI 470
+K +K A+N+ LASDPDREGEAIAWH+ ++L+ D+ EN RVVF+EIT+ ++
Sbjct: 64 VKDLKKYAKKAKNVFLASDPDREGEAIAWHLSKILELDDS-KEN----RVVFNEITKDAV 118
Query: 471 KVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDR 530
K + + R I+ +LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+ DR
Sbjct: 119 KESFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDR 178
Query: 531 EMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQ 590
E EI FKP+EYW++E K+S F A H+++K + + + + +
Sbjct: 179 ENEIRNFKPEEYWSIEGEFRYKKS------KFTAKFLHYKNK---PFKLKTKKDVEKVTA 229
Query: 591 KINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPD 650
+++ F++ +K+ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 230 ELDGDKFEITNVNKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKR 289
Query: 651 GTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAI 710
GLITYMRTD IS A E + I ++YG + + K + Q+AHEAI
Sbjct: 290 QGTVGLITYMRTDSTRISQTAKDEAKQYIEDKYGKDYLS----NRTAKGKQGDQDAHEAI 345
Query: 711 RPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSS 770
RPT R P + L D +LY LIW R +A QM PA + + +D+ +I FR++
Sbjct: 346 RPTSTLRTPYEMKAYLTRDQHRLYKLIWERFVASQMAPAILDTVALDV--TQNNIKFRAN 403
Query: 771 CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQ 830
++F GF Y + K++++N++ L +L GD + ++E QH TQ
Sbjct: 404 GQTIKFKGFMTLY-------VEAKDDKDNEKENK---LPNLSKGDEVTATQIEPAQHFTQ 453
Query: 831 PPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890
PP RY+E LVK LEEL IGRPSTYA T+ +Q RNYV ++S+ P G +V +
Sbjct: 454 PPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEIVYEQVKD 513
Query: 891 YFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 950
YF E+ D FT +MET LD ++ G W+ ++ +++ F L + + E+ +EK
Sbjct: 514 YFPEIIDVEFTVNMETLLDKIAEGDIGWRKVIDNFYGSF--------KLDVERAEEEMEK 565
Query: 951 TFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
A C VCG ++ K+ R+G F+ C+ P C
Sbjct: 566 VEIKDEPAG-----EDCEVCG-SPMVIKMGRYGK--FMACSNFPDC 603
>sp|P39814|TOP1_BACSU DNA topoisomerase 1 OS=Bacillus subtilis (strain 168) GN=topA PE=3
SV=1
Length = 691
Score = 433 bits (1113), Expect = e-120, Method: Compositional matrix adjust.
Identities = 266/677 (39%), Positives = 372/677 (54%), Gaps = 58/677 (8%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
+V+VES KAK I+ YLG Y+V S GHVRDL V + +F + L
Sbjct: 5 LVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVL 64
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K +K A A+ + LA+DPDREGEAIAWH+ L L N + RVVF+EIT+ +IK
Sbjct: 65 KELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLD----LDLN-SDCRVVFNEITKDAIK 119
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
+ + R I+ +LV A ARR LD L+G+ ISP+LW+K+ SAGRVQS AL LI DRE
Sbjct: 120 ESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDRE 179
Query: 532 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 591
EI++FKP+EYWT++ K + +TF F K +L + S + K+I +
Sbjct: 180 KEINDFKPEEYWTIDGTFLKGQ----ETFE-----ASFFGKNGKKLPLNSEADVKEILSQ 230
Query: 592 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 651
+ + V K +K+ R P+ TSTLQQ+AA KLNF A TM +AQ+LYEG+ L
Sbjct: 231 LKGNQYTVEKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGRE 290
Query: 652 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 711
GLITYMRTD IS+ A E + I + YG G RK KK +NAQ+AHEAIR
Sbjct: 291 GTVGLITYMRTDSTRISNTAVDEAAAFIDQTYGKEFLG--GKRKPAKKNENAQDAHEAIR 348
Query: 712 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 771
PT + R P+ L +L D ++LY LIW R +A QM PA + + VD+ N + FR++
Sbjct: 349 PTSVLRKPSELKAVLGRDQMRLYKLIWERFVASQMAPAVLDTMSVDLTN--NGLTFRANG 406
Query: 772 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 831
S+V+F GF Y + + EE DR +L L+ GD + ++E +QH TQP
Sbjct: 407 SKVKFSGFMKVYVEGKDDQM-----EEKDR-----MLPDLQEGDTVLSKDIEPEQHFTQP 456
Query: 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 891
P RY+E LVK LEE GIGRPSTYA TL +Q R YV + ++ P G++V + +
Sbjct: 457 PPRYTEARLVKTLEERGIGRPSTYAPTLDTIQRRGYVALDNKRFVPTELGQIVLDLIMEF 516
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 951
F E+ + FTA ME +LD+V G TEW ++ ++++ F A+S + +VE E
Sbjct: 517 FPEIINVEFTAKMERDLDHVEEGNTEWVKIIDNFYTDFEKRVKKAES-EMKEVEIEPEYA 575
Query: 952 FGDSLFASLPNKDR----------------------------SCPVCGEGTLIFKVSRFG 983
D S P + CP CGEG ++ + S+
Sbjct: 576 GEDCELCSSPMVYKMGRYGKFLACSNFPDCRNTKPIVKQIGVKCPSCGEGNIVERKSK-K 634
Query: 984 AGYFIGCNQHPRCNYIA 1000
F GC+++P C +++
Sbjct: 635 KRVFYGCDRYPDCEFVS 651
>sp|Q49X35|TOP1_STAS1 DNA topoisomerase 1 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=topA
PE=3 SV=1
Length = 688
Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust.
Identities = 252/648 (38%), Positives = 357/648 (55%), Gaps = 47/648 (7%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
+++V+VES KAK I+ YLG Y+V+ S GHVRDL V ++D+ +
Sbjct: 2 AENLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDAENDYEPKYITIRGKG 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+K +K A+ + LASDPDREGEAIAWH+ +L +D+ T RVVF+EIT+
Sbjct: 62 PVVKELKKHAKKAKKVFLASDPDREGEAIAWHLANILNLEDS-----TENRVVFNEITKD 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K + + R I+ LV A ARR LD L+G+NISP+LW+K+ SAGRVQS AL L+
Sbjct: 117 AVKDSFKHPRGIEMELVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVI 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI FKP+EYW +E K++ F A HF++K + + + I
Sbjct: 177 DRENEIRNFKPEEYWKIEGEFRYKKT------KFTAKFLHFKNK---PFKLTEKADVEKI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+++ F+V K +K+ R P+ TSTLQQ+AA KLNF A TM LAQ+LYEG+ L
Sbjct: 228 TTQLDGDQFEVTKVTKKEKTRYPANPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDL 287
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
GLITYMRTD ISD+A E ++ I E YG+ + RK K + Q+AHE
Sbjct: 288 KKQGTVGLITYMRTDSTRISDQAQSEAKNYIQETYGNDYTSN---RK--SKGQGDQDAHE 342
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRP+ R P + L D +LY LIW R +A QM PA + + +D+ D I FR
Sbjct: 343 AIRPSSTLRTPNEMKNFLTRDQHRLYKLIWERFVASQMAPAILDTVAMDLTQND--IKFR 400
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ ++F GF Y + K++ E+ + L ++ G+ + +E QH
Sbjct: 401 ANGQTIKFKGFMTLY-------VETKDDSEDGKDNK---LPNIGEGEMVTATNIEPSQHF 450
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQPP RY+E LVK +EEL IGRPSTYA T+ +Q RNYV +S+ P G +V +
Sbjct: 451 TQPPPRYTEARLVKTMEELKIGRPSTYAPTIDTIQKRNYVKNESKRFVPTELGEIVHEQV 510
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
YF E+ D FT +MET LD V+ G WK ++ D++S F VE+
Sbjct: 511 KDYFPEIIDVDFTVNMETLLDKVADGEIGWKKVISDFYSSFK-----------QDVERAE 559
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
E+ + +D C VCG ++ K+ R+G F+ C+ P C
Sbjct: 560 EEMEKIEIKDEPAGED--CEVCG-SPMVIKMGRYGK--FMACSNFPDC 602
>sp|Q9PLZ2|TOP1_CAMJE DNA topoisomerase 1 OS=Campylobacter jejuni subsp. jejuni serotype
O:2 (strain NCTC 11168) GN=topA PE=3 SV=1
Length = 700
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 247/652 (37%), Positives = 370/652 (56%), Gaps = 56/652 (8%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVR-PDDDFSMVWEVPSAAW 408
K++++VES KAK I +LG YEV+ S GH+RDL S ++ DD+F + + S
Sbjct: 3 KNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKSSFGIKIEDDEFIPEYRITSDHS 62
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+K +K A+ + LA+D DREGEAIA+HI + + + EN T+ R+VFHEIT++
Sbjct: 63 ALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKD----EN-TLPRIVFHEITKS 117
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I+ AL+ R+++ + V A RR LD ++G+ +SPLL +K+ SAGRVQSAAL +I
Sbjct: 118 AIENALKNPRKLNMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQRGLSAGRVQSAALKIIV 177
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI F P EY++++ + K LD A L F ++ +L+I + AK I
Sbjct: 178 DREKEIRAFVPLEYFSIDMIFQK----DLD-----AELVEFDKAKIEKLTITNKDRAKLI 228
Query: 589 EQKINSANFQV--IKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGV 646
+ + + + I++ +R + P P++TSTLQQ A+N+L F+ TM +AQKLYEGV
Sbjct: 229 LEACKNEVYSISDIESKERKIA--PPPPFMTSTLQQSASNRLGFNPKKTMMIAQKLYEGV 286
Query: 647 QLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEA 706
+G G+ITYMRTD L+++ EA + R I +G + P + Y K K AQEA
Sbjct: 287 NTHEGVM-GVITYMRTDSLNLAKEAVENARKFIQANFGKDYLPSKA-NVYTTKTKGAQEA 344
Query: 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIV 766
HEAIRPT++ P + + LD+D LKLY+LI++R +ACQM PA + Q Q ++ ++ +V
Sbjct: 345 HEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMSPA-ISQTQ-NVFVKNDRVV 402
Query: 767 FRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQ 826
F+ S ++ F G+ Y D+D I L + K G L + +E+
Sbjct: 403 FKISGRKILFDGYYKVYGDMDKDKI----------------LPNFKIGQNLKVQNLEMNS 446
Query: 827 HHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSA 886
H T+PP+RYSE LVKKLE LGIGRPSTYA T+ +L R+YVT+ + L P V+
Sbjct: 447 HFTEPPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVTIDKKQLIPSDVAFNVTE 506
Query: 887 FLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEK 946
L FS++ D FT+++E LD ++ +W+ L +++ F + ++E+
Sbjct: 507 VLEKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPF-----------MRKIEE 555
Query: 947 MLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
K L SCP CG G L + RFG F+ C P+C Y
Sbjct: 556 GKTKIASQKTVTKL---GESCPDCG-GELAIRKGRFGE--FVACLNFPKCKY 601
>sp|P34185|TOP1_SYNE7 DNA topoisomerase 1 OS=Synechococcus elongatus (strain PCC 7942)
GN=topA PE=3 SV=2
Length = 883
Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust.
Identities = 304/853 (35%), Positives = 440/853 (51%), Gaps = 111/853 (13%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGS--------------VRPDDDF 397
+V+VES TKA+ I+ YL Y V S GHVRDL + V +++F
Sbjct: 4 LVIVESPTKARTIRNYLPKDYRVEASMGHVRDLPQSASDIPTELKGEKWSNLGVDVENNF 63
Query: 398 SMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITV 457
+ ++ VP +K++K AL A+ LILA+D DREGE+I+WH++++LQ + +
Sbjct: 64 APLYIVPKDKKKIVKTLKDALKDADELILATDEDREGESISWHLLQLLQPR------VPT 117
Query: 458 ARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAG 517
R+VFHEIT+ +I+ AL+ R++D LV A RR LD L+G+ +SPLLW+K+ SAG
Sbjct: 118 KRMVFHEITQEAIQAALKNCRDVDQRLVHAQETRRILDRLVGYTLSPLLWKKIAWGLSAG 177
Query: 518 RVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRL--- 574
RVQS A+ L+ RE F+ YW ++A L +++ F A L +RL
Sbjct: 178 RVQSVAVRLLVQRERARRAFRQGSYWDLKAQL------TVEAGQFEAKLWTLAGQRLATG 231
Query: 575 -------------NQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQ 621
Q+ + EA+ + ++ + +QV ++ RK P+ TSTLQ
Sbjct: 232 NDFDESTGQIIAGRQVCLLDQQEAEALRDRLQTQPWQVKSLEEKPTTRKPAPPFTTSTLQ 291
Query: 622 QDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFE 681
Q++ KL SA TM++AQ LYE G ITYMRTD +H+S +A + RS + +
Sbjct: 292 QESNRKLRLSARETMRVAQSLYE---------RGFITYMRTDSVHLSQQAIEAARSCVEQ 342
Query: 682 RYGSHH-APEEGPRKYFKKVKNAQEAHEAIRPT-DIRRLPAMLSGLLDEDCLKLYSLIWS 739
YG ++ +P+ PR++ K KNAQEAHEAIRP + RLP +GL + LY LIW
Sbjct: 343 MYGKNYLSPQ--PRQFTTKSKNAQEAHEAIRPAGNTFRLPQE-TGLSGAE-FALYDLIWK 398
Query: 740 RTMACQMQPA--TVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAY----EDVDAGAIRY 793
RT+A QM A T+ + +++ NA+ FR+S R++F GF AY +D DA
Sbjct: 399 RTIASQMAEARQTMLSVLLEVDNAE----FRASGKRIDFPGFFRAYVEGSDDPDAAL--- 451
Query: 794 KENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPS 853
DR +L +LK GD E+ H TQPPARY+E SLVK LE GIGRPS
Sbjct: 452 -----EDRE---ILLPALKVGDRPTCQELAAIGHETQPPARYTEASLVKMLENEGIGRPS 503
Query: 854 TYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSA 913
TYAS + + DR Y + S L P F V+A L +F ++ D SF+A ME LD++S
Sbjct: 504 TYASIIGTIVDRGYAQLVSNTLTPTFTAFAVTALLEQHFPDLVDTSFSARMEQSLDDISN 563
Query: 914 GLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEG 973
G +W L ++ R L +++ +T LP K R
Sbjct: 564 GEVDWLPYLSQFY-RGDRGLEEQVKLRESEIDPAAARTVA---LEGLPAKVR-------- 611
Query: 974 TLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDD---DEEDTLQRNTNVDEPKLIGHHPA 1030
+ RFGA + P + K L D +TL R + P +G HP
Sbjct: 612 -----IGRFGAYLEAEADGEPIKANLPKELTPADLDVQRVETLLRQ-KTEGPDQLGTHPE 665
Query: 1031 SKEKVLLKSGPYGFYVQLG---EDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLG 1087
+ E + L +G YG YVQLG E++ PKRAS+ +++I+LE A+ LL P LG
Sbjct: 666 TDEPIYLLTGAYGPYVQLGAATEEKPK--PKRASLPKGMSLETISLEQAVGLLSLPRTLG 723
Query: 1088 NHPKDGQPIMLRLARAG-FSVRHRRTIASVPKNMKPND----VTLEKALEFLSGKDVRRC 1142
HP+ G+ I L R G + V +++K +D + L++ALE L+ R
Sbjct: 724 EHPETGRRIQAGLGRFGPYVVCDLGGGEKDYRSLKADDDVLTIDLDRALELLAQPKKSR- 782
Query: 1143 GRPKGKPKREEAL 1155
GR K +P RE L
Sbjct: 783 GRGK-EPIREVGL 794
>sp|Q9CG80|TOP1_LACLA DNA topoisomerase 1 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=topA PE=3 SV=1
Length = 710
Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust.
Identities = 247/651 (37%), Positives = 366/651 (56%), Gaps = 57/651 (8%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
GK++V+VES KAK I+ YLG Y+V+ S GH+RDL + SV ++D+ +
Sbjct: 25 GKNLVIVESPAKAKTIEKYLGRNYKVVASVGHIRDLKKSTMSVDIENDYEPQYINIRGKA 84
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+ S+K A+ + LASDPDREGEAI+WH+ +L L E RVVF+EIT+
Sbjct: 85 PLINSLKKEAKAAKAVYLASDPDREGEAISWHLAHILNL--PLEEK---NRVVFNEITKD 139
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
++K A + R+ID +LV A ARR LD L+G++ISP+LW+K+ SAGRVQS AL LI
Sbjct: 140 AVKNAFKEPRQIDVDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIV 199
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI+ F P+EYW+++ K T F A K+ + ++ + +
Sbjct: 200 DRENEINAFIPEEYWSIDGEFKK------GTKKFKASFWGIDGKK---HPLKTNEDVIKV 250
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
++++ +F V K K+ R P PY TS++QQDAANKLNF TM +AQ+LYEG+ L
Sbjct: 251 MERLDGPDFNVDKVEKKERRRNAPLPYTTSSMQQDAANKLNFRTRKTMMVAQQLYEGLTL 310
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN---AQE 705
GLITYMRTD IS A + I +++G ++ K+ KVKN AQ+
Sbjct: 311 GSQGHQGLITYMRTDSTRISPVAQSAAHNYIADQFGEKYS------KHGSKVKNASGAQD 364
Query: 706 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 765
AHEAIRP+++ P ++ LD+D LKLY+LIW+R +A QM A ++V++ + +
Sbjct: 365 AHEAIRPSNVFNTPDAIAKYLDKDQLKLYTLIWNRFVASQMVAAIFDTVKVNL--SQNGV 422
Query: 766 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 825
+F ++ S+V+F G+ Y D D + E EEN+ ++K + V+ +
Sbjct: 423 IFIANGSQVKFDGYLRIYNDSDKSNM-LPEMEENE---------TVKKAN------VKPE 466
Query: 826 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 885
QH TQPPARYSE +L+K LEE G+GRPSTYA TL+ +Q R YV + ++ P G +V+
Sbjct: 467 QHFTQPPARYSEATLIKTLEENGVGRPSTYAPTLETIQKRYYVRLSAKRFEPTELGEIVN 526
Query: 886 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 945
+ +F + + FTA+ME +LD V G +W ++ ++ F+ + E
Sbjct: 527 KLIVEFFPNIVNTEFTAEMEKDLDEVEEGKRQWIEVVDQFYKPFAK--------ELENAE 578
Query: 946 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
+ +EK A C VCG ++ K+ RFG F C+ P C
Sbjct: 579 EGMEKIQIKDEPAGF-----DCDVCG-SPMVIKLGRFGK--FYACSNFPDC 621
>sp|P55991|TOP1_HELPY DNA topoisomerase 1 OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=topA PE=3 SV=1
Length = 736
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 252/665 (37%), Positives = 372/665 (55%), Gaps = 52/665 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDD-FSMVWEVPSAAW 408
K +++VES KAK I+ +L YEV+ S GHVRDL+ + ++ D+ F+ + V
Sbjct: 2 KHLIIVESPAKAKTIKNFLDKNYEVIASKGHVRDLSKFALGIKIDETGFTPNYVVDKDHK 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+K I A +A+D DREGEAI +H+ ++ + + R+VFHEIT+
Sbjct: 62 ELVKQIIELSKKASITYIATDEDREGEAIGYHVACLIGGKLE-----SYPRIVFHEITQN 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I AL+ R+ID + V A ARR LD ++GF +S L+ K+ SAGRVQSAAL L+
Sbjct: 117 AILNALKTPRKIDMSKVNAQQARRFLDRIVGFKLSSLIASKITKGLSAGRVQSAALKLVI 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
D+E EI FKP Y+T++A ESH A L ++ +L + +A++I
Sbjct: 177 DKEREIKAFKPLTYFTLDAYF---ESH------LEAQLISYKGNKLKAQELIDEKKAQEI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ ++ ++ + K+S P P++TSTLQQ A++ L FS T TM +AQKLYEGV
Sbjct: 228 KNELEKESYAISSIVKKSKKSPTPPPFMTSTLQQSASSLLGFSPTKTMSIAQKLYEGVAT 287
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
P G G+ITYMRTD L+I+ EA +E R+ I + YG + P + + Y K KNAQEAHE
Sbjct: 288 PQGVM-GVITYMRTDSLNIAKEALEEARNKILKDYGKDYLPPKA-KVYSSKNKNAQEAHE 345
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT I P L L + L+LY+LI+ R +A QMQ A V + A E F+
Sbjct: 346 AIRPTSIILEPNALKDYLKPEELRLYTLIYKRFLASQMQDALFESQSVVV--ACEKGEFK 403
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+S ++ F G+ + N++ D+ +L +LK DP+ L ++E H
Sbjct: 404 ASGRKLLFDGY-----------YKILGNDDKDK-----LLPNLKENDPIKLEKLESNAHV 447
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PPARYSE SL+K LE LGIGRPSTYA T+ +LQ+R+Y+ V+ + + V L
Sbjct: 448 TEPPARYSEASLIKVLESLGIGRPSTYAPTISLLQNRDYIKVEKKQISALESAFKVIEIL 507
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F E+ D F+A +E ELDN++ +++ +L D++ F + I Q K+
Sbjct: 508 EKHFEEIVDSKFSASLEEELDNIAQNKADYQQVLKDFYYPFMDKIEAGKKNIISQ--KVH 565
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
EKT +SCP CG G L+ K SR+G FI CN +P+C Y+ +T +D+
Sbjct: 566 EKT------------GQSCPKCG-GELVKKNSRYGE--FIACNNYPKCKYVKQTESANDE 610
Query: 1009 EEDTL 1013
+ L
Sbjct: 611 ADQEL 615
>sp|Q9ZMV7|TOP1_HELPJ DNA topoisomerase 1 OS=Helicobacter pylori (strain J99) GN=topA PE=3
SV=1
Length = 736
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 253/665 (38%), Positives = 369/665 (55%), Gaps = 52/665 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDD-FSMVWEVPSAAW 408
K +++VES KAK I+ +L YEV+ S GHVRDL+ + ++ D+ F+ + V
Sbjct: 2 KHLIIVESPAKAKTIKNFLDKNYEVVASKGHVRDLSKFALGIKIDETGFTPNYVVDKDHK 61
Query: 409 THLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEA 468
+K I A +A+D DREGEAI +H+ ++ + + R+VFHEIT+
Sbjct: 62 ELVKQIIELSKKASITYIATDEDREGEAIGYHVACLIGGKLE-----SYPRIVFHEITQN 116
Query: 469 SIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLIC 528
+I L+ R+ID V A ARR LD ++GF +S L+ K+ SAGRVQSAAL L+
Sbjct: 117 AILNVLKTPRKIDMFKVNAQQARRLLDRIVGFKLSSLIASKITKGLSAGRVQSAALKLVI 176
Query: 529 DREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588
DRE EI FKP Y+T++A+ E H A L ++ +L + +A++I
Sbjct: 177 DREKEIRPFKPLTYFTLDALF---EPH------LEAQLISYKGNKLKAQELIDEKKAQEI 227
Query: 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQL 648
+ ++ ++ + K+S P P++TSTLQQ A++ L FS T TM +AQKLYEGV
Sbjct: 228 KNELEKESYIISSIIKKSKKSPTPPPFMTSTLQQSASSLLGFSPTKTMSIAQKLYEGVAT 287
Query: 649 PDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
P G G+ITYMRTD L+I+ EA +E R+ I + YG + P + + Y K KNAQEAHE
Sbjct: 288 PQGVM-GVITYMRTDSLNIAKEALEEARAKILKDYGKDYLPPKA-KVYSSKNKNAQEAHE 345
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT I P L L + LKLY+LI+ R +A QMQ A V + A E F+
Sbjct: 346 AIRPTSIILEPNALKDYLKPEELKLYTLIYKRFLASQMQDALFESQSVVV--ACEKGEFK 403
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
+S ++ F G + N++ D+ +L +LK DP+ L ++E H
Sbjct: 404 ASGRKLLF-----------DGHYKILGNDDKDK-----LLPNLKENDPIKLEKLESNAHV 447
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
T+PPARYSE SL+K LE LGIGRPSTYA T+ +LQ+R+Y+ V+ + + V L
Sbjct: 448 TEPPARYSEASLIKVLESLGIGRPSTYAPTISLLQNRDYIKVEKKQISALESAFKVIEIL 507
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+F E+ D F+A +E ELDN++ +++ +L D++ F + I Q K+
Sbjct: 508 EKHFEEIVDSKFSASLEEELDNIAQNKADYQQVLKDFYYPFMDKIEAGKKNIISQ--KVH 565
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
EKT +SCP CG G L+ K SR+G FI CN +P+C YI +T +D+
Sbjct: 566 EKT------------GQSCPKCG-GELVKKNSRYGE--FIACNNYPKCKYIKQTENANDE 610
Query: 1009 EEDTL 1013
+ L
Sbjct: 611 AKQEL 615
>sp|O34204|TOP1_FERIS DNA topoisomerase 1 OS=Fervidobacterium islandicum GN=topA PE=3
SV=1
Length = 699
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 260/684 (38%), Positives = 360/684 (52%), Gaps = 72/684 (10%)
Query: 317 KATKASLQRQTSEEMVIVPRGQNTQNPLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLP 376
K K L Q+++ I +GQ ++N K V++VES KAK I+ LG+ Y+V+
Sbjct: 9 KDKKNELDNQSAD---IELKGQ-SKNEESKGGKKKVIIVESPAKAKTIERILGNDYQVIS 64
Query: 377 SYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEA 436
S GH+RDL + V + + +E+ + ++ IK SG E ++L SD DREGEA
Sbjct: 65 SKGHIRDLPQKQFGVDLNS-LKLDFEIIPGKESVVEQIKKMTSGKE-VLLPSDQDREGEA 122
Query: 437 IAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDY 496
IAWH+ +L + +NI + F EITE +IK A++ REID N V A LARR LD
Sbjct: 123 IAWHLSTILGVK---GKNI----ITFTEITERAIKEAVKNPREIDMNKVNAQLARRVLDR 175
Query: 497 LIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHS 556
++G+ ISPLLWR + +SAGRVQSAAL +IC+RE E F PQ+Y+ V
Sbjct: 176 IVGYMISPLLWRIIKDARSAGRVQSAALKIICERERERYRFVPQKYFKV----------W 225
Query: 557 LDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNP-TPY 615
+D A+LT K++ I +KD+ QK+ S I + VRKNP P+
Sbjct: 226 IDIAGLKAYLTKVDGKKIKPTDITEEI-SKDVLQKVKSVRLVDIDVKE---VRKNPPAPF 281
Query: 616 ITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEI 675
ITSTLQQDAA+KL F + TMK+AQ+LYEGV +G A ITYMRTD +SD A +
Sbjct: 282 ITSTLQQDAASKLGFPVSKTMKIAQELYEGVDTKEGHTA-FITYMRTDSTRVSDVAKEAA 340
Query: 676 RSLIFERYGSHH---APEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLK 732
I + +G + + E +K K Q+AHE IRP D+ P LLD+D K
Sbjct: 341 EKFILKNFGREYLNESSEVASKKGSKTKGKVQDAHECIRPVDVNITPEKAKELLDKDHHK 400
Query: 733 LYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIR 792
LY LIW R +A QM A Q D + VF +S F GF+ Y +D
Sbjct: 401 LYELIWKRFIASQMSSAIYKQYSYDFESG--KYVFEASIRERIFDGFEKVY-TID----- 452
Query: 793 YKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRP 852
NE +++H+ + D YL E + + T PP RY+E SLVK LE GIGRP
Sbjct: 453 ---NEPSEKHKELKV-------DQEYLVEPKSAEAQTTPPDRYTEASLVKTLEMEGIGRP 502
Query: 853 STYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVS 912
STYA+ ++ L DR YV K + L P G +V+ +L F ++ D FTA+ME ELD V
Sbjct: 503 STYATIIQTLLDRGYVVKKRKTLIPTILGFVVNHYLEQRFPDIVDKGFTAEMEKELDEVE 562
Query: 913 AGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGE 972
G +WK ++ + F+ K LE+ + FA + D +C C
Sbjct: 563 NGKKDWKEVVKSFLKEFN---------------KDLERA-KNEFFAIDFDTDITCEDCS- 605
Query: 973 GTLIFKVSRFGAGYFIGCNQHPRC 996
G KV ++ G ++ C P C
Sbjct: 606 GNYKLKVGKY--GLYLHC---PNC 624
>sp|Q9X909|TOP1_STRCO DNA topoisomerase 1 OS=Streptomyces coelicolor (strain ATCC BAA-471 /
A3(2) / M145) GN=topA PE=3 SV=1
Length = 952
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 295/863 (34%), Positives = 425/863 (49%), Gaps = 101/863 (11%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAA--------RSGSVR-----PDD 395
G+ +V+VES KAK I+GYLG Y V S GH+RDL + +G VR +
Sbjct: 11 GRRLVIVESPAKAKTIKGYLGPGYVVEASVGHIRDLPSGAAEVPEKYTGEVRRLGVDVEH 70
Query: 396 DFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENI 455
DF ++ V + + +K +K L ++ L LA+D DREGEAIAWH+ E+L+ + I
Sbjct: 71 DFQPIYVVNADKKSQVKKLKDLLKESDELFLATDEDREGEAIAWHLQEVLKPK------I 124
Query: 456 TVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQS 515
V R+VFHEIT+ +I+ A+ RE++ LV A RR LD L G+ +SP+LW+K+ S
Sbjct: 125 PVKRMVFHEITKDAIRAAVANPRELNQKLVDAQETRRILDRLYGYEVSPVLWKKVMPRLS 184
Query: 516 AGRVQSAALSLICDREMEIDEFKPQEYWTVEAVL-DKKESHSLDTFSFPAHLTHFQSKRL 574
AGRVQS A L+ +RE E F+ EYW + + + D S A L +R+
Sbjct: 185 AGRVQSVATRLVVERERERIAFRSAEYWDLTGTFATGRAGDASDPSSLVARLQTVDGRRV 244
Query: 575 NQL----SIGSHTEAKDIE----------QKINSANFQVIKNSKRSMVRKNPTPYITSTL 620
Q S+G A + + + F V + R P+ T+TL
Sbjct: 245 AQGRDFDSLGQLKSANTLHLDEANARALAAALENTRFAVRSVESKPYRRSPYAPFRTTTL 304
Query: 621 QQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIF 680
QQ+A+ KL F A TM++AQKLYE G ITYMRTD +SD A R+ +
Sbjct: 305 QQEASRKLGFGAKSTMQVAQKLYEN---------GYITYMRTDSTTLSDTAVSAARAQVT 355
Query: 681 ERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIR-RLPAMLSGLLDEDCLKLYSLIWS 739
+ YG+ + P + PR Y KVKNAQEAHEAIRP+ R R PA L D KLY LIW
Sbjct: 356 QLYGADYLPPQ-PRTYAGKVKNAQEAHEAIRPSGDRFRTPAETG--LTGDQFKLYELIWK 412
Query: 740 RTMACQMQPATVGQIQVDIGNA---DESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKEN 796
RT+A QM+ AT + V IG A + F +S + F GF AY V+ E
Sbjct: 413 RTVASQMKDATGNSVTVKIGGAASDGRDVEFSASGKTITFHGFLKAY--VEGADDPNAEL 470
Query: 797 EENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYA 856
++ +R L + GD L E+ + H T+PPARY+E SLVK+LEE IGRPSTYA
Sbjct: 471 DDRERR-----LPQVAEGDALTAEEITVDGHATKPPARYTEASLVKELEEREIGRPSTYA 525
Query: 857 STLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLT 916
S + + DR YV K L P F V L +F + DY FTA ME +LD ++ G
Sbjct: 526 SIIGTILDRGYVFKKGTALVPSFLSFAVVNLLEKHFGRLVDYDFTARMEDDLDRIARGEA 585
Query: 917 EWKGLLVDYWSRF------------SSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKD 964
+ V + RF ++ H+ +++++ L A +
Sbjct: 586 QS----VPWLRRFYFGEGDGTGGGGAADAGNGDGDHLGGLKELVT-----DLGAIDAREV 636
Query: 965 RSCPVCGEGTLIFKVSRFGAGYFIG---CNQHPRCNYIAKTLYGDDDE----EDTLQRNT 1017
S PV + + +V R+G G H R + + + L D+ E+ L + +
Sbjct: 637 SSFPVGND--IKLRVGRYGPYVERGEKDAENHQRAD-VPEDLAPDELSVELAEELLAKPS 693
Query: 1018 NVDEPKLIGHHPASKEKVLLKSGPYGFYVQ----LGEDRTG---YLPKRASVSHIKDVDS 1070
E +G PA+ ++ K G YG YV G +TG P+ AS+ +D+
Sbjct: 694 GDFE---LGTDPATGHAIVAKDGRYGPYVTEVLPEGTPKTGKNAVKPRTASLFKSMSLDT 750
Query: 1071 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1130
+TL+DAL+L+ P +G +G I + R G ++ S+ + ++TLE+A
Sbjct: 751 VTLDDALKLMSLPRVVGAD-AEGVEITAQNGRYGPYLKKGTDSRSLQTEDQLFEITLEEA 809
Query: 1131 LEFLSGKDVRRCGRPKGKPKREE 1153
L + R GR KP +E
Sbjct: 810 LAIYAQPKQR--GRAAAKPPLKE 830
>sp|O83409|TOP1_TREPA DNA topoisomerase 1 OS=Treponema pallidum (strain Nichols) GN=topA
PE=3 SV=1
Length = 731
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 247/648 (38%), Positives = 353/648 (54%), Gaps = 48/648 (7%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +V+VES KA+ I+ YLG Y V S GHV DL ++ + DF +
Sbjct: 17 KHLVIVESPAKAQTIEKYLGTQYVVRASMGHVIDLPKSRLAIDIEHDFQPEYITVRGRAQ 76
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
LK ++ + + LASD DREGEAIA+H+ + +Q + + + R+VF+EIT +
Sbjct: 77 CLKELRTLSKQSLQVFLASDRDREGEAIAYHLAQSIQA----YCDTPIKRIVFNEITPHA 132
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A+ ID V A ARR LD L+G+++ PLLW K+ SAGRVQS AL LIC+
Sbjct: 133 IRAAIGHPVPIDTAKVNAQKARRVLDRLVGYHLCPLLWHKVKNGLSAGRVQSVALRLICE 192
Query: 530 REMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE 589
RE+E+ F P+EYWTVE +K D SF A L Q K+ S T A +
Sbjct: 193 REVEVKRFVPEEYWTVEGTFEK------DKKSFSALLILIQGKKAVFKSKQEATSAIGLF 246
Query: 590 QKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLP 649
+ + A I++ ++++ K P + TSTLQQ AAN+L F++ TM++AQ+LYEGV L
Sbjct: 247 SQ-SEARVSQIRSFEKNVRPKQP--FTTSTLQQCAANRLGFTSRKTMQVAQQLYEGVSL- 302
Query: 650 DGT-AAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHE 708
GT GLITYMRTD + +S+ A KE+R+ I + A P +Y K K+ Q+AHE
Sbjct: 303 -GTHRVGLITYMRTDSVRVSEAAVKEVRAWIATHFSD--ALPGTPNRYAAKGKS-QDAHE 358
Query: 709 AIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768
AIRPT + P + L D ++LY+LIW R +A QM A V + +I VF
Sbjct: 359 AIRPTYVAHTPERIKAHLTRDQIRLYTLIWERFVASQMTDARVRSLTFEITAGPA--VFS 416
Query: 769 SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828
++ ++V GF + + + + A+L K G+ + L V+ QH
Sbjct: 417 ATETQVIEQGFYRVLKMLSPKDL------------SKAVLPPTKEGEVVALHNVQSVQHF 464
Query: 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888
TQ P RY++ S+VK LEE GIGRPSTYA T+ VL DR YVT + L P G+++S L
Sbjct: 465 TQGPVRYTDASIVKMLEEKGIGRPSTYAPTISVLLDRYYVTRIQKQLMPTPLGKVISDLL 524
Query: 889 SHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKML 948
+ YF +V D SFTA ME++LD V +W ++ D++ FS + V K L
Sbjct: 525 TTYFHDVVDVSFTARMESKLDEVEEDKIKWNCVIADFYPAFSE--------KVSTVMKDL 576
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRC 996
G +F D C CG+ T++ K+ RF G+F+ C + P C
Sbjct: 577 NSMRG--VFDE--KTDVVCSQCGD-TMVKKLGRF--GFFLACGKFPEC 617
>sp|P0A2I1|TOP1_SALTY DNA topoisomerase 1 OS=Salmonella typhimurium (strain LT2 / SGSC1412
/ ATCC 700720) GN=topA PE=3 SV=1
Length = 865
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 251/710 (35%), Positives = 363/710 (51%), Gaps = 98/710 (13%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSV----------------R 392
GK++V+VES KAK I YLG+ Y V S GH+RDL SGS +
Sbjct: 2 GKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPT-SGSAAKKSADSTSTKTAKKPK 60
Query: 393 PDDDFSMVWEVPSAAWTHLKSIKVALSGAENLI--------------LASDPDREGEAIA 438
D+ ++V + W + + L G E ++ LA+D DREGEAIA
Sbjct: 61 KDERGALVNRMGVDPWHNWDAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA 120
Query: 439 WHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLI 498
WH+ E++ DA + +RVVF+EIT+ +I+ A + E++ N V A ARR +D ++
Sbjct: 121 WHLREVIGGDDARY-----SRVVFNEITKNAIRQAFEQPGELNINRVNAQQARRFMDRVV 175
Query: 499 GFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLD 558
G+ +SPLLW+K+ SAGRVQS A+ L+ +RE EI F P+E+W ++A +L
Sbjct: 176 GYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEIDANTTTPSGEAL- 234
Query: 559 TFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITS 618
P +TH K ++ A + +K A + V++ + K P+ITS
Sbjct: 235 ----PLQVTHQNDKPFRPVNREQTLAAVSLLEK---ARYSVLEREDKPTSSKPGAPFITS 287
Query: 619 TLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSL 678
TLQQ A+ +L F TM +AQ+LYE AG ITYMRTD ++S +A +R
Sbjct: 288 TLQQAASTRLGFGVKKTMMMAQRLYE---------AGYITYMRTDSTNLSQDAVNMVRGY 338
Query: 679 IFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIW 738
I + +G + P+ P +Y K +N+QEAHEAIRP+D+ + L + + D KLY LIW
Sbjct: 339 IGDNFGKKYLPD-NPNQYASK-ENSQEAHEAIRPSDVAVMAESLKDM-EADAQKLYQLIW 395
Query: 739 SRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEE 798
+ +ACQM PA + +G + + R R F G+ + G +
Sbjct: 396 RQFVACQMTPAQYDSTTLTVGAGEFRLKARGRILR--FDGWTKVMPALRKG--------D 445
Query: 799 NDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYAST 858
DR L ++ GD L L E+ QH T+PPAR+SE SLVK+LE+ GIGRPSTYAS
Sbjct: 446 EDR-----TLPAVNKGDALTLLELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASI 500
Query: 859 LKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEW 918
+ +QDR YV V++R Y E G +V+ L F E+ +Y FTA ME LD V+ EW
Sbjct: 501 ISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMEDSLDQVANHQAEW 560
Query: 919 KGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFK 978
K +L +++S F+ + + EK E+ L + D CP CG I
Sbjct: 561 KAVLDNFFSDFTQ--------QLDKAEKDPEEGGMRPNQMVLTSID--CPTCGRKMGIRT 610
Query: 979 VSRFGAGYFIGCNQHP-----RC---------NYIAKTLYGDDDEEDTLQ 1014
S G F+GC+ + RC N + L GDD E + L+
Sbjct: 611 AS---TGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDDAETNALR 657
>sp|P0A2I2|TOP1_SALTI DNA topoisomerase 1 OS=Salmonella typhi GN=topA PE=3 SV=1
Length = 865
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 251/710 (35%), Positives = 363/710 (51%), Gaps = 98/710 (13%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSV----------------R 392
GK++V+VES KAK I YLG+ Y V S GH+RDL SGS +
Sbjct: 2 GKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPT-SGSAAKKSADSTSTKTAKKPK 60
Query: 393 PDDDFSMVWEVPSAAWTHLKSIKVALSGAENLI--------------LASDPDREGEAIA 438
D+ ++V + W + + L G E ++ LA+D DREGEAIA
Sbjct: 61 KDERGALVNRMGVDPWHNWDAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA 120
Query: 439 WHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLI 498
WH+ E++ DA + +RVVF+EIT+ +I+ A + E++ N V A ARR +D ++
Sbjct: 121 WHLREVIGGDDARY-----SRVVFNEITKNAIRQAFEQPGELNINRVNAQQARRFMDRVV 175
Query: 499 GFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLD 558
G+ +SPLLW+K+ SAGRVQS A+ L+ +RE EI F P+E+W ++A +L
Sbjct: 176 GYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEIDANTTTPSGEAL- 234
Query: 559 TFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITS 618
P +TH K ++ A + +K A + V++ + K P+ITS
Sbjct: 235 ----PLQVTHQNDKPFRPVNREQTLAAVSLLEK---ARYSVLEREDKPTSSKPGAPFITS 287
Query: 619 TLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSL 678
TLQQ A+ +L F TM +AQ+LYE AG ITYMRTD ++S +A +R
Sbjct: 288 TLQQAASTRLGFGVKKTMMMAQRLYE---------AGYITYMRTDSTNLSQDAVNMVRGY 338
Query: 679 IFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIW 738
I + +G + P+ P +Y K +N+QEAHEAIRP+D+ + L + + D KLY LIW
Sbjct: 339 IGDNFGKKYLPD-NPNQYASK-ENSQEAHEAIRPSDVAVMAESLKDM-EADAQKLYQLIW 395
Query: 739 SRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEE 798
+ +ACQM PA + +G + + R R F G+ + G +
Sbjct: 396 RQFVACQMTPAQYDSTTLTVGAGEFRLKARGRILR--FDGWTKVMPALRKG--------D 445
Query: 799 NDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYAST 858
DR L ++ GD L L E+ QH T+PPAR+SE SLVK+LE+ GIGRPSTYAS
Sbjct: 446 EDR-----TLPAVNKGDALTLLELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASI 500
Query: 859 LKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEW 918
+ +QDR YV V++R Y E G +V+ L F E+ +Y FTA ME LD V+ EW
Sbjct: 501 ISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMEDSLDQVANHQAEW 560
Query: 919 KGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFK 978
K +L +++S F+ + + EK E+ L + D CP CG I
Sbjct: 561 KAVLDNFFSDFTQ--------QLDKAEKDPEEGGMRPNQMVLTSID--CPTCGRKMGIRT 610
Query: 979 VSRFGAGYFIGCNQHP-----RC---------NYIAKTLYGDDDEEDTLQ 1014
S G F+GC+ + RC N + L GDD E + L+
Sbjct: 611 AS---TGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDDAETNALR 657
>sp|P43012|TOP1_HAEIN DNA topoisomerase 1 OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=topA PE=3 SV=1
Length = 868
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 235/679 (34%), Positives = 352/679 (51%), Gaps = 88/679 (12%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGS------------------- 390
KS+V+VES KAK I YLG Y V S GH+RDL S
Sbjct: 3 KSLVIVESPAKAKTINKYLGSQYVVKSSVGHIRDLPTVGSSTGEKAKPISTKGMDAEEKA 62
Query: 391 ----------------VRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREG 434
+ P D+ +++ + +K A+++ LA+D DREG
Sbjct: 63 KIKAEKERNALVKRMGIDPYHDWKANYQILPGKEKVVSELKSLAKKADHIYLATDLDREG 122
Query: 435 EAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRAL 494
EAIAWH+ E++ D +RVVF+EIT+ +IK A + +++ + V A RR L
Sbjct: 123 EAIAWHLREVIGGNDD-----RFSRVVFNEITKNAIKQAFEKPEQLNMDRVNAQQTRRFL 177
Query: 495 DYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKES 554
D ++GF +SPLLW+K+ SAGRVQS A+ L+ +RE EI F+P+EYW V + + +
Sbjct: 178 DRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFQPEEYWEVAVLTNNQNK 237
Query: 555 HSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTP 614
++ +T ++ K+ + + EA+ +N +++ V + + P
Sbjct: 238 QAIRL-----DVTDYKGKKFDP---KNQKEAQSAVDFLNVSDYVVTDLETKPTSSRPRAP 289
Query: 615 YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKE 674
+ITSTLQQ A+ +L F TM LAQ+LYE AG ITYMRTD ++S +A
Sbjct: 290 FITSTLQQTASTRLGFGVKKTMMLAQRLYE---------AGYITYMRTDSTNLSQDALNM 340
Query: 675 IRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLY 734
R+ I +G+ + PE+ P Y K +NAQEAHEAIRP+DIR LP L G+ ++D ++LY
Sbjct: 341 ARTYIENHFGAQYLPEK-PNFYSSK-ENAQEAHEAIRPSDIRALPESLEGM-EKDAVRLY 397
Query: 735 SLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYK 794
LIW + +ACQM PA + + D ++ + R F G+ + +
Sbjct: 398 DLIWCQFLACQMPPAQYDSSTLTVTAGDYTLKAKGRILR--FDGWTKVLPQIG----KNP 451
Query: 795 ENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPST 854
E++E L S+ + L L EV+ QH T+PPAR++E +LVK+LE+ GIGRPST
Sbjct: 452 EDQE---------LPSVTVSEKLALKEVQPTQHFTKPPARFTEAALVKELEKRGIGRPST 502
Query: 855 YASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAG 914
YA+ + +Q+R YV ++R Y E G +V+ L+ F E+ +Y FTA+ME LD +++G
Sbjct: 503 YAAIISTIQERGYVRTENRRFYAEKMGEIVTDRLNESFGELMNYDFTANMEDTLDKIASG 562
Query: 915 LTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGT 974
WK L ++ FSS + A+ L++ G SL D CP CG
Sbjct: 563 SVNWKTELNQFFKDFSSQLSKAE----------LDELEGGMRPNSLVETDIKCPTCGRNM 612
Query: 975 LIFKVSRFGAGYFIGCNQH 993
I S G F+GC +
Sbjct: 613 AIRTAS---TGVFLGCTGY 628
>sp|P06612|TOP1_ECOLI DNA topoisomerase 1 OS=Escherichia coli (strain K12) GN=topA PE=1
SV=2
Length = 865
Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust.
Identities = 252/710 (35%), Positives = 361/710 (50%), Gaps = 98/710 (13%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSV----------------R 392
GK++V+VES KAK I YLG Y V S GH+RDL SGS +
Sbjct: 2 GKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPT-SGSAAKKSADSTSTKTAKKPK 60
Query: 393 PDDDFSMVWEVPSAAWTHLKSIKVALSGAENLI--------------LASDPDREGEAIA 438
D+ ++V + W + ++ L G E ++ LA+D DREGEAIA
Sbjct: 61 KDERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA 120
Query: 439 WHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLI 498
WH+ E++ DA + +RVVF+EIT+ +I+ A E++ + V A ARR +D ++
Sbjct: 121 WHLREVIGGDDARY-----SRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVV 175
Query: 499 GFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLD 558
G+ +SPLLW+K+ SAGRVQS A+ L+ +RE EI F P+E+W V+A +L
Sbjct: 176 GYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEAL- 234
Query: 559 TFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITS 618
+TH K ++ A + +K A + V++ + K P+ITS
Sbjct: 235 ----ALQVTHQNDKPFRPVNKEQTQAAVSLLEK---ARYSVLEREDKPTTSKPGAPFITS 287
Query: 619 TLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSL 678
TLQQ A+ +L F TM +AQ+LYE AG ITYMRTD ++S +A +R
Sbjct: 288 TLQQAASTRLGFGVKKTMMMAQRLYE---------AGYITYMRTDSTNLSQDAVNMVRGY 338
Query: 679 IFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIW 738
I + +G + PE P +Y K +N+QEAHEAIRP+D+ + L + + D KLY LIW
Sbjct: 339 ISDNFGKKYLPE-SPNQYASK-ENSQEAHEAIRPSDVNVMAESLKDM-EADAQKLYQLIW 395
Query: 739 SRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEE 798
+ +ACQM PA + +G D + R R F G+ + G +
Sbjct: 396 RQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILR--FDGWTKVMPALRKG--------D 445
Query: 799 NDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYAST 858
DR IL ++ GD L L E+ QH T+PPAR+SE SLVK+LE+ GIGRPSTYAS
Sbjct: 446 EDR-----ILPAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASI 500
Query: 859 LKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEW 918
+ +QDR YV V++R Y E G +V+ L F E+ +Y FTA ME LD V+ EW
Sbjct: 501 ISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEW 560
Query: 919 KGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFK 978
K +L ++S F+ + + EK E+ L + D CP CG I
Sbjct: 561 KAVLDHFFSDFTQ--------QLDKAEKDPEEGGMRPNQMVLTSID--CPTCGRKMGIRT 610
Query: 979 VSRFGAGYFIGCNQHP-----RC---------NYIAKTLYGDDDEEDTLQ 1014
S G F+GC+ + RC N + L G+D E + L+
Sbjct: 611 AS---TGVFLGCSGYALPPKERCKTTINLVPENEVLNVLEGEDAETNALR 657
>sp|Q9HZJ5|TOP1_PSEAE DNA topoisomerase 1 OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=topA PE=3 SV=1
Length = 868
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 244/712 (34%), Positives = 360/712 (50%), Gaps = 102/712 (14%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGS------------------ 390
GKS+V+VES KAK I YLG Y V S GH+RDL S
Sbjct: 2 GKSLVIVESPAKAKTINKYLGSQYVVKSSIGHIRDLPTSGSSSSKEPAAKGRKSASEAPA 61
Query: 391 ----------------VRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREG 434
V P+ + +E+ + ++ A+ + LA+D DREG
Sbjct: 62 LSPKEKARRQLVSRMGVDPEHGWKAKYEILPGKEKVIDELRRLAKDADTVYLATDLDREG 121
Query: 435 EAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRAL 494
EAIAWH+ E + ++ ++ RVVF+EIT+ +I+ A E+D N V A ARR L
Sbjct: 122 EAIAWHLREAIGGDESRYK-----RVVFNEITKKAIQEAFSQPGELDINRVNAQQARRFL 176
Query: 495 DYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKES 554
D ++G+ +SPLLW+K+ SAGRVQS A+ L+ +RE EI F P+EYW V A L +
Sbjct: 177 DRVVGYMVSPLLWQKIARGLSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADLGTAKG 236
Query: 555 HSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIE--QKINSANFQVIKNSKRSMVRKNP 612
++ F+ R + EA+ + +K+ ++ + V K R +
Sbjct: 237 ANV----------RFEVTREKGEAFKPLNEAQAMAALEKLKASAYSVAKREDRPTSSRPS 286
Query: 613 TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAA 672
P+ITSTLQQ A+N+L F TM +AQ+LYE AG ITYMRTD ++S +A
Sbjct: 287 APFITSTLQQAASNRLGFGVKKTMMMAQRLYE---------AGYITYMRTDSTNLSADAI 337
Query: 673 KEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLK 732
+R I + +G + P G + + AQEAHEAIRP+D+ P LSG+ + D +
Sbjct: 338 GMVRGFIEDEFGQKYLP--GKANVYSSKEGAQEAHEAIRPSDVNLKPTQLSGM-ERDAER 394
Query: 733 LYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIR 792
LY LIW + +ACQM PA V + D R+ ++F G+ +
Sbjct: 395 LYDLIWRQFVACQMTPAEYLSTSVSVTAGD--FELRAKGRILKFDGYTRVLPQ------Q 446
Query: 793 YKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRP 852
K E++ +L +K G+ L L +++ QH T+PPARYSE SLVK+LE+ GIGRP
Sbjct: 447 SKPGEDD-------VLPEMKEGENLKLIKLDPSQHFTKPPARYSEASLVKELEKRGIGRP 499
Query: 853 STYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVS 912
STYA+ + +Q+R YVT +R Y E G +V+ L+ F+ + DY FTA ME LD+V+
Sbjct: 500 STYAAIISTIQERGYVTTHNRRFYAEKMGDIVTDRLNESFANLMDYGFTAGMEEHLDDVA 559
Query: 913 AGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGE 972
G +WK LL +++ F + L + +V + + +L ++P C CG
Sbjct: 560 QGERDWKHLLDEFYGDFK------KKLEVAEVSEKGMRANQPTL-TNIP-----CRECGR 607
Query: 973 GTLIFKVSRFGAGYFIGCNQH-----PRCNYIAKTLYGD----DDEEDTLQR 1015
+I S G F+GC+ + RC + GD DDE ++ R
Sbjct: 608 PMMIRTAS---TGVFLGCSGYSLPPKERCKATVNLIPGDEIAADDEGESESR 656
>sp|O69548|TOP1_MYCLE DNA topoisomerase 1 OS=Mycobacterium leprae (strain TN) GN=topA PE=3
SV=1
Length = 947
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 290/898 (32%), Positives = 423/898 (47%), Gaps = 129/898 (14%)
Query: 335 PRGQNTQNPLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLA--------- 385
PRG + P + +V+VES TKA+ + GYLG Y V S GH+RDL
Sbjct: 4 PRGSRSGRNGSP---RRLVIVESPTKARKLSGYLGSAYIVESSRGHIRDLPRTAADVPAK 60
Query: 386 ------ARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAW 439
AR G V D DF ++ + + + +K L G + L LA+D DREGEAIAW
Sbjct: 61 FKSEPWARLG-VNVDADFEPLYIITPEKKSTVTELKGLLQGVDELYLATDGDREGEAIAW 119
Query: 440 HIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIG 499
H+++ L+ + + V R+VFHEITE +I A RE+D +LV A RR LD L G
Sbjct: 120 HLMQTLKPR------VPVKRMVFHEITEHAILAAAAHPRELDIDLVDAQETRRILDRLYG 173
Query: 500 FNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESH-SLD 558
+ +SP+LW+K+ SAGRVQS A +I RE + F YW + A LD S +
Sbjct: 174 YEVSPVLWKKVAPKLSAGRVQSVATRIIVQRERDRMAFCSAVYWDIVAKLDASVSDPTAQ 233
Query: 559 TFSFPAHLTHFQSKRL------------------NQLSIGSHTEAKDIEQKINSANFQVI 600
+F A LT R+ +++ + A + + A V
Sbjct: 234 PLTFVARLTAVDGLRVATGRDFGAMGTLRGDCEVSKIIVLDDLTATTLAAGLRGAQLTVA 293
Query: 601 KNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYM 660
++ R+ P++TSTLQQ+A KL FSA TM +AQ+LYE G ITYM
Sbjct: 294 SAEEKLYTRRPYPPFMTSTLQQEAGRKLRFSAERTMSIAQRLYEN---------GYITYM 344
Query: 661 RTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPT-DIRRLP 719
RTD +S+ A R+ + YG + + PR+Y +KVKNAQEAHEAIRP + P
Sbjct: 345 RTDSTTLSESAINAARTQARQLYGEEYV-SDSPRQYTRKVKNAQEAHEAIRPAGETFATP 403
Query: 720 AMLSGLLDEDCLKLYSLIWSRTMACQMQPA--TVGQIQVDIGNADESIVFRSSCSRVEFL 777
+ LD D ++Y L+W RT+A QM A T ++++ ++ +VF +S + F
Sbjct: 404 DAVCNELDGDEFRIYELVWRRTVASQMADARGTTLSLRIEGRAGEQHVVFSASGRTLTFP 463
Query: 778 GFQAAY-EDVD--AGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPAR 834
GF AY E VD AG E ++ +R L L +G L + ++ H T PPAR
Sbjct: 464 GFLKAYVETVDELAGG----EADDAERR-----LPHLTSGQLLDVIDLTPDGHATNPPAR 514
Query: 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSE 894
Y+E SLVK LEELGIGRPSTY+S +K +QDR YV K L P + V+ L +F
Sbjct: 515 YTEASLVKALEELGIGRPSTYSSIIKTVQDRGYVQKKGSALVPSWVAFAVTGLLEQHFGR 574
Query: 895 VTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGD 954
+ DY FTA ME ELD ++ G + L +++ F + S+ K L +
Sbjct: 575 LVDYDFTAAMEDELDEIANGNEQRTNWLNNFY--FGGNHGVSDSIARSGGLKKLVGVNIE 632
Query: 955 SLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQ 1014
+ A N + + +V + G Y+ + L GDD E +
Sbjct: 633 GIDAREVNSIKLFDDEHGRPVYVRVGKTGP-------------YLERLLAGDDGELTPQR 679
Query: 1015 RNTN-------------------VDEPKLIGHHPASKEKVLLKSGPYGFYV--------- 1046
N N E +++G P + +++ K G YG YV
Sbjct: 680 ANLNGTLTPDELTLEVAEELFATPHEGRVLGVDPETGHEIVAKDGRYGPYVTEVLPKHDD 739
Query: 1047 -----QLGEDRT----------GYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPK 1091
G +T G P+ S+ D+ +ITLEDAL+LL P +G P
Sbjct: 740 DYGAADQGTKKTKKGRRASASQGPKPRTGSLLRSMDLQTITLEDALKLLLLPRVVGVDPA 799
Query: 1092 DGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKDVRRCGRPKGKP 1149
G+ I + R G ++ + + + +TL++AL+ + + +R GR P
Sbjct: 800 SGEEITAQNGRYGPYLKRGKDSRPLTTEDQMFIITLDEALKIYA--EPKRAGRQSTSP 855
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 21/150 (14%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+++G PAS E++ ++G YG Y++ G+D ++ + ITL++AL++
Sbjct: 791 PRVVGVDPASGEEITAQNGRYGPYLKRGKDSR-------PLTTEDQMFIITLDEALKIYA 843
Query: 1082 YPV-------------NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
P LG P G+P++++ R G V T AS+ K +T E
Sbjct: 844 EPKRAGRQSTSPPPLRELGTDPTSGKPMLIKDGRFGPYVTDGETNASLRKGDDVVSITDE 903
Query: 1129 KALEFLSGKDVRR-CGRPKGKPKREEALEA 1157
+A E L+ + R RP K ++ A +A
Sbjct: 904 RAAELLADRRARGPVKRPAKKARKVPAKKA 933
>sp|Q9KRB2|TOP1_VIBCH DNA topoisomerase 1 OS=Vibrio cholerae serotype O1 (strain ATCC 39315
/ El Tor Inaba N16961) GN=topA PE=3 SV=1
Length = 876
Score = 352 bits (904), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 245/711 (34%), Positives = 357/711 (50%), Gaps = 108/711 (15%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDL------AARSG------------- 389
GKS+V+VES KAK I YLG + V S GHVRDL A +G
Sbjct: 2 GKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQTATPTGKAAAASTKKASTT 61
Query: 390 ------------------SVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPD 431
V P + +++ + ++ A+++ LA+D D
Sbjct: 62 DKEQQKREKERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAKDADSVYLATDLD 121
Query: 432 REGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLAR 491
REGEAIAWH+ E++ + ++ RVVF+EIT+ +I+ A + E++ + V A AR
Sbjct: 122 REGEAIAWHLREIIGGDEKRYK-----RVVFNEITKNAIQQAFKQPGELNMDGVNAQQAR 176
Query: 492 RALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDK 551
R +D ++GF +SPLLW+K+ SAGRVQS A+ L+ +RE EI F P+E+W + A D
Sbjct: 177 RFMDRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINA--DT 234
Query: 552 KESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKN 611
+ D A K +N+ TEA +N A ++V K + K
Sbjct: 235 LTADKQDFRLLVAQKDGLAFKPVNE------TEALAAVAALNKAQYEVCKREDKPTTSKP 288
Query: 612 PTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEA 671
P+ITSTLQQ A+ +L + TM LAQ+LYE AG ITYMRTD ++S EA
Sbjct: 289 SAPFITSTLQQAASTRLGYGVKKTMMLAQRLYE---------AGYITYMRTDSTNLSAEA 339
Query: 672 AKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCL 731
+ +R I + YG + P + P Y K +NAQEAHEAIRP+D+ L G+ + D
Sbjct: 340 VENLRGYITKHYGEAYLPSQ-PNVYGSK-QNAQEAHEAIRPSDVTVTADDLEGM-EADAH 396
Query: 732 KLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAI 791
KLY+LIW++ +ACQM PA V + A+ ++ ++ ++F G+ +
Sbjct: 397 KLYALIWNQFVACQMTPAQYDSTTVSVKAAEYTL--KAKGRILKFDGWTRVQRPLG---- 450
Query: 792 RYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGR 851
+NE+ IL +K GD L L ++ KQH T+PPARY+E +LVK+LE+ GIGR
Sbjct: 451 ---KNEDQ-------ILPPVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKELEKRGIGR 500
Query: 852 PSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNV 911
PSTYAS + +QDR YV V R + E G +V+ L F ++ +Y FTA ME +LD +
Sbjct: 501 PSTYASIISTIQDRGYVKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQI 560
Query: 912 SAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPN----KDRSC 967
+ G W +L ++++ FS A+ +SL PN + C
Sbjct: 561 AEGEVNWTAVLDEFFADFSRDLETAEQ--------------DESLGGMKPNHIVMTNILC 606
Query: 968 PVCGEGTLIFKVSRFGAGYFIGCNQH-----PRCNYIAKTLYGDDDEEDTL 1013
P C I S G F+GC+ + RC KT DEE +
Sbjct: 607 PTCSRPMGIRTAS---TGVFLGCSGYGLPPKERC----KTTINLGDEEGVI 650
>sp|Q9CN30|TOP1_PASMU DNA topoisomerase 1 OS=Pasteurella multocida (strain Pm70) GN=topA
PE=3 SV=1
Length = 868
Score = 351 bits (900), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 232/677 (34%), Positives = 350/677 (51%), Gaps = 88/677 (12%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDL--------------------AARSG 389
KS+V+VES KAK I YLG Y V S GH+RDL A
Sbjct: 3 KSLVIVESPAKAKTINKYLGSNYVVKSSVGHIRDLPTVGSSNGEKAKAISTKGLSAEEKS 62
Query: 390 SVRPDDDFSMVWEV----PSAAWTH-----------LKSIKVALSGAENLILASDPDREG 434
+++ + D + + + P W + +K A+++ LA+D DREG
Sbjct: 63 AIKQEKDRNALVKRMGIDPYHQWKANYQILPGKEKVVAELKSLAKKADHIYLATDLDREG 122
Query: 435 EAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRAL 494
EAIAWH+ E++ DA +RVVF+EIT+ +I+ A + +++ + V A RR L
Sbjct: 123 EAIAWHLREVIGGDDA-----RFSRVVFNEITKNAIQQAFEKPEQLNLDRVNAQQTRRFL 177
Query: 495 DYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKES 554
D ++GF +SPLLW+K+ SAGRVQS A+ L+ +RE EI F+P+EYW ++ + +
Sbjct: 178 DRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLVVEREREIKAFQPEEYWEIDVLTQTQAK 237
Query: 555 HSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTP 614
+L +T F+ K+ + T+A+ + A++ V + + P
Sbjct: 238 QALRL-----AVTQFKGKKFEP---KNATQAQSAVDFLQHADYVVSDLETKPTHSRAKAP 289
Query: 615 YITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKE 674
+ITSTLQQ A+ +L F TM LAQ+LYE AG ITYMRTD ++S +A K
Sbjct: 290 FITSTLQQTASTRLGFGVKKTMMLAQRLYE---------AGYITYMRTDSTNLSQDALKM 340
Query: 675 IRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLY 734
+R I YG + P + P Y K +NAQEAHEAIRP+D+ L L+G+ D+D ++LY
Sbjct: 341 VRGYIQSHYGESYLPSK-PVFYSSK-ENAQEAHEAIRPSDVNTLAEQLTGM-DKDAVRLY 397
Query: 735 SLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYK 794
LIW + +ACQM A V + + + + R F G+ +
Sbjct: 398 DLIWRQFVACQMPAAQYDSTTVTVRAGEYELKAKGRILR--FDGWTKVLPTMS------- 448
Query: 795 ENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPST 854
+N E+ +L ++ + L+L V +Q T+PPAR+SE +LVK+LE+ GIGRPST
Sbjct: 449 KNAEDQ------VLPDVQLNEKLHLEHVLPEQLFTKPPARFSEAALVKELEKRGIGRPST 502
Query: 855 YASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAG 914
YA+ + +Q+R YV V++R Y E G +V+ L+ F+ + +Y FTA+ME LD ++ G
Sbjct: 503 YAAIISTIQERGYVRVENRRFYAEKMGEIVTDRLNQSFTALMNYDFTANMENILDQIANG 562
Query: 915 LTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGT 974
WK L ++ FS + A+ L++ G SL D +CP CG
Sbjct: 563 EKNWKTELNQFFKDFSQQLSQAE----------LDELEGGMKPNSLVPTDINCPTCGRKM 612
Query: 975 LIFKVSRFGAGYFIGCN 991
I S G F+GC+
Sbjct: 613 AIRTAS---TGVFLGCS 626
>sp|P46799|TOP1_THEMA DNA topoisomerase 1 OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=topA PE=1 SV=1
Length = 633
Score = 350 bits (899), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 226/616 (36%), Positives = 326/616 (52%), Gaps = 78/616 (12%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K +VVES KAK I+ LG+ YEV S GH+ DL V + DF + V
Sbjct: 6 KKYIVVESPAKAKTIKSILGNEYEVFASMGHIIDLPKSKFGVDLEKDFEPEFAVIKGKEK 65
Query: 410 HLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEAS 469
++ +K L+ L++ASD DREGEAIAWHI + + R+VF EIT
Sbjct: 66 VVEKLK-DLAKKGELLIASDMDREGEAIAWHIARVTNTLGRKN------RIVFSEITPRV 118
Query: 470 IKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICD 529
I+ A++ REID V+A LARR LD ++G+++SP+LWR SAGRVQSA L L+CD
Sbjct: 119 IREAVKNPREIDMKKVRAQLARRILDRIVGYSLSPVLWRNFKSNLSAGRVQSATLKLVCD 178
Query: 530 REMEIDEFKPQEYWTVE-------AVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSH 582
RE EI F P++Y + A +D KE D L QS +++L +
Sbjct: 179 REREILRFVPKKYHRITVNFDGLTAEIDVKEKKFFDA----ETLKEIQS--IDELVVE-- 230
Query: 583 TEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKL 642
E+K++ F P P+ TSTLQQ+A +KL FS + TM +AQ+L
Sbjct: 231 ------EKKVSVKKFA------------PPEPFKTSTLQQEAYSKLGFSVSKTMMIAQQL 272
Query: 643 YEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKN 702
YEGV+ DG A ITYMRTD +SD A +E R+LI E +G + + R+ K
Sbjct: 273 YEGVETKDGHIA-FITYMRTDSTRVSDYAKEEARNLITEVFGEEYVGSKRERR--KSNAK 329
Query: 703 AQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNAD 762
Q+AHEAIRPT++ P L+ D KLY LIW R +A QM+P+ + + + D
Sbjct: 330 IQDAHEAIRPTNVFMTPEEAGKYLNSDQKKLYELIWKRFLASQMKPSQYEETRFVLRTKD 389
Query: 763 ESIVFRSSCSRVEFLGFQAAYE-DVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGE 821
F+ + + F G++ ++ + + G ++E E S+K P+
Sbjct: 390 GKYRFKGTVLKKIFDGYEKVWKTERNTGEFPFEEGE------------SVK---PVV--- 431
Query: 822 VELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRG 881
V++++ T+P RY+EGSLVK++E LGIGRPSTYAST+K+L +R Y+ LYP G
Sbjct: 432 VKIEEQETKPKPRYTEGSLVKEMERLGIGRPSTYASTIKLLLNRGYIKKIRGYLYPTIVG 491
Query: 882 RMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSY--------- 932
+V +L +S+V SFTA+ME +LD V G K +L +++ FSS
Sbjct: 492 SVVMDYLEKKYSDVVSVSFTAEMEKDLDEVEQGKKTDKIVLREFYESFSSVFDRNDRIVV 551
Query: 933 -------CTCAQSLHI 941
C+C + + +
Sbjct: 552 DFPTNQKCSCGKEMRL 567
>sp|P0A620|TOP1_MYCTU DNA topoisomerase 1 OS=Mycobacterium tuberculosis GN=topA PE=1 SV=1
Length = 934
Score = 349 bits (895), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 232/609 (38%), Positives = 320/609 (52%), Gaps = 67/609 (11%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLA---------------ARSGSVRPDDD 396
+V+VES TKA+ + YLG Y V S GH+RDL AR G V D D
Sbjct: 20 LVIVESPTKARKLASYLGSGYIVESSRGHIRDLPRAASDVPAKYKSQPWARLG-VNVDAD 78
Query: 397 FSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENIT 456
F ++ + + + ++ L + L LA+D DREGEAIAWH++E L+ + I
Sbjct: 79 FEPLYIISPEKRSTVSELRGLLKDVDELYLATDGDREGEAIAWHLLETLKPR------IP 132
Query: 457 VARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSA 516
V R+VFHEITE +I+ A + R++D +LV A RR LD L G+ +SP+LW+K+ SA
Sbjct: 133 VKRMVFHEITEPAIRAAAEHPRDLDIDLVDAQETRRILDRLYGYEVSPVLWKKVAPKLSA 192
Query: 517 GRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESH-SLDTFSFPAHLTHFQSKRL- 574
GRVQS A +I RE + F+ YW + A LD S +F A LT +R+
Sbjct: 193 GRVQSVATRIIVARERDRMAFRSAAYWDILAKLDASVSDPDAAPPTFSARLTAVAGRRVA 252
Query: 575 --------------NQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTL 620
+++ + A + ++ V ++ R+ P++TSTL
Sbjct: 253 TGRDFDSLGTLRKGDEVIVLDEGSATALAAGLDGTQLTVASAEEKPYARRPYPPFMTSTL 312
Query: 621 QQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIF 680
QQ+A+ KL FSA TM +AQ+LYE G ITYMRTD +S+ A R+
Sbjct: 313 QQEASRKLRFSAERTMSIAQRLYEN---------GYITYMRTDSTTLSESAINAARTQAR 363
Query: 681 ERYGSHH-APEEGPRKYFKKVKNAQEAHEAIRPT-DIRRLPAMLSGLLDE---DCLKLYS 735
+ YG + AP PR+Y +KVKNAQEAHEAIRP + P + LD D +LY
Sbjct: 364 QLYGDEYVAP--APRQYTRKVKNAQEAHEAIRPAGETFATPDAVRRELDGPNIDDFRLYE 421
Query: 736 LIWSRTMACQMQPATVGQIQVDIG--NADESIVFRSSCSRVEFLGFQAAY-EDVDAGAIR 792
LIW RT+A QM A + + I + + +VF ++ + F GF AY E VD +
Sbjct: 422 LIWQRTVASQMADARGMTLSLRITGMSGHQEVVFSATGRTLTFPGFLKAYVETVDE--LV 479
Query: 793 YKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRP 852
E ++ +R L L G L + E+ H T PPARY+E SLVK LEELGIGRP
Sbjct: 480 GGEADDAERR-----LPHLTPGQRLDIVELTPDGHATNPPARYTEASLVKALEELGIGRP 534
Query: 853 STYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVS 912
STY+S +K +QDR YV K L P + V+ L +F + DY FTA ME ELD ++
Sbjct: 535 STYSSIIKTIQDRGYVHKKGSALVPSWVAFAVTGLLEQHFGRLVDYDFTAAMEDELDEIA 594
Query: 913 AG---LTEW 918
AG T W
Sbjct: 595 AGNERRTNW 603
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 23/146 (15%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+++G PAS E++ ++G YG Y++ G D R+ V+ + +ITL++AL++
Sbjct: 787 PRVVGVDPASGEEITAQNGRYGPYLKRGND------SRSLVTE-DQIFTITLDEALKIYA 839
Query: 1082 YPV-------------NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
P LG P G+P++++ R G V T AS+ K +T E
Sbjct: 840 EPKRRGRQSASAPPLRELGTDPASGKPMVIKDGRFGPYVTDGETNASLRKGDDVASITDE 899
Query: 1129 KALEFLSGKDVRRCGRPKGKPKREEA 1154
+A E L+ RR P +P R+ A
Sbjct: 900 RAAELLAD---RRARGPAKRPARKAA 922
Score = 37.4 bits (85), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 1023 KLIGHHPASKEKVLLKSGPYGFYV------------------QLGEDRTGYLPKRASVSH 1064
+ +G P + +++ + G +G YV + + G P+ S+
Sbjct: 709 RTLGLDPETGHEIVAREGRFGPYVTEILPEPAADAAAAAQGVKKRQKAAGPKPRTGSLLR 768
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
D+ ++TLEDAL LL P +G P G+ I + R G ++ S+ +
Sbjct: 769 SMDLQTVTLEDALRLLSLPRVVGVDPASGEEITAQNGRYGPYLKRGNDSRSLVTEDQIFT 828
Query: 1125 VTLEKALEFLSGKDVRRCGR 1144
+TL++AL+ + + +R GR
Sbjct: 829 ITLDEALKIYA--EPKRRGR 846
>sp|P0A621|TOP1_MYCBO DNA topoisomerase 1 OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=topA PE=3 SV=1
Length = 934
Score = 349 bits (895), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 232/609 (38%), Positives = 320/609 (52%), Gaps = 67/609 (11%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLA---------------ARSGSVRPDDD 396
+V+VES TKA+ + YLG Y V S GH+RDL AR G V D D
Sbjct: 20 LVIVESPTKARKLASYLGSGYIVESSRGHIRDLPRAASDVPAKYKSQPWARLG-VNVDAD 78
Query: 397 FSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENIT 456
F ++ + + + ++ L + L LA+D DREGEAIAWH++E L+ + I
Sbjct: 79 FEPLYIISPEKRSTVSELRGLLKDVDELYLATDGDREGEAIAWHLLETLKPR------IP 132
Query: 457 VARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSA 516
V R+VFHEITE +I+ A + R++D +LV A RR LD L G+ +SP+LW+K+ SA
Sbjct: 133 VKRMVFHEITEPAIRAAAEHPRDLDIDLVDAQETRRILDRLYGYEVSPVLWKKVAPKLSA 192
Query: 517 GRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESH-SLDTFSFPAHLTHFQSKRL- 574
GRVQS A +I RE + F+ YW + A LD S +F A LT +R+
Sbjct: 193 GRVQSVATRIIVARERDRMAFRSAAYWDILAKLDASVSDPDAAPPTFSARLTAVAGRRVA 252
Query: 575 --------------NQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTL 620
+++ + A + ++ V ++ R+ P++TSTL
Sbjct: 253 TGRDFDSLGTLRKGDEVIVLDEGSATALAAGLDGTQLTVASAEEKPYARRPYPPFMTSTL 312
Query: 621 QQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIF 680
QQ+A+ KL FSA TM +AQ+LYE G ITYMRTD +S+ A R+
Sbjct: 313 QQEASRKLRFSAERTMSIAQRLYEN---------GYITYMRTDSTTLSESAINAARTQAR 363
Query: 681 ERYGSHH-APEEGPRKYFKKVKNAQEAHEAIRPT-DIRRLPAMLSGLLDE---DCLKLYS 735
+ YG + AP PR+Y +KVKNAQEAHEAIRP + P + LD D +LY
Sbjct: 364 QLYGDEYVAP--APRQYTRKVKNAQEAHEAIRPAGETFATPDAVRRELDGPNIDDFRLYE 421
Query: 736 LIWSRTMACQMQPATVGQIQVDIG--NADESIVFRSSCSRVEFLGFQAAY-EDVDAGAIR 792
LIW RT+A QM A + + I + + +VF ++ + F GF AY E VD +
Sbjct: 422 LIWQRTVASQMADARGMTLSLRITGMSGHQEVVFSATGRTLTFPGFLKAYVETVDE--LV 479
Query: 793 YKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRP 852
E ++ +R L L G L + E+ H T PPARY+E SLVK LEELGIGRP
Sbjct: 480 GGEADDAERR-----LPHLTPGQRLDIVELTPDGHATNPPARYTEASLVKALEELGIGRP 534
Query: 853 STYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVS 912
STY+S +K +QDR YV K L P + V+ L +F + DY FTA ME ELD ++
Sbjct: 535 STYSSIIKTIQDRGYVHKKGSALVPSWVAFAVTGLLEQHFGRLVDYDFTAAMEDELDEIA 594
Query: 913 AG---LTEW 918
AG T W
Sbjct: 595 AGNERRTNW 603
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 23/146 (15%)
Query: 1022 PKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLR 1081
P+++G PAS E++ ++G YG Y++ G D R+ V+ + +ITL++AL++
Sbjct: 787 PRVVGVDPASGEEITAQNGRYGPYLKRGND------SRSLVTE-DQIFTITLDEALKIYA 839
Query: 1082 YPV-------------NLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLE 1128
P LG P G+P++++ R G V T AS+ K +T E
Sbjct: 840 EPKRRGRQSASAPPLRELGTDPASGKPMVIKDGRFGPYVTDGETNASLRKGDDVASITDE 899
Query: 1129 KALEFLSGKDVRRCGRPKGKPKREEA 1154
+A E L+ RR P +P R+ A
Sbjct: 900 RAAELLAD---RRARGPAKRPARKAA 922
Score = 37.4 bits (85), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 1023 KLIGHHPASKEKVLLKSGPYGFYV------------------QLGEDRTGYLPKRASVSH 1064
+ +G P + +++ + G +G YV + + G P+ S+
Sbjct: 709 RTLGLDPETGHEIVAREGRFGPYVTEILPEPAADAAAAAQGVKKRQKAAGPKPRTGSLLR 768
Query: 1065 IKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPND 1124
D+ ++TLEDAL LL P +G P G+ I + R G ++ S+ +
Sbjct: 769 SMDLQTVTLEDALRLLSLPRVVGVDPASGEEITAQNGRYGPYLKRGNDSRSLVTEDQIFT 828
Query: 1125 VTLEKALEFLSGKDVRRCGR 1144
+TL++AL+ + + +R GR
Sbjct: 829 ITLDEALKIYA--EPKRRGR 846
>sp|P57371|TOP1_BUCAI DNA topoisomerase 1 OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=topA PE=3 SV=1
Length = 861
Score = 345 bits (884), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 233/673 (34%), Positives = 344/673 (51%), Gaps = 91/673 (13%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLA------------------------ 385
KS+V+VES KAK I YLG Y V S GH+RDL
Sbjct: 3 KSLVIVESPAKAKTINQYLGSEYIVKSSIGHIRDLTKGKLYNKEKNKKFLNENFIEKTNE 62
Query: 386 ----ARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHI 441
+ + P ++ + + + +K + +++ LA+D DREGEAIAWH+
Sbjct: 63 NKILIKQMGIDPYQNWKFEYHILPGKEKIISELKYIANQVKHIYLATDLDREGEAIAWHL 122
Query: 442 VEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFN 501
E++ + +RVVF+EIT+ SI+ A + I+ N V A ARR +D ++G+
Sbjct: 123 KEVIGGDSS-----KFSRVVFNEITQHSIQKAFKNVGHINMNRVHAQQARRFMDRIVGYM 177
Query: 502 ISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFS 561
ISPLLW+K+ SAGRVQS A+ +I DRE I F P+EYW ++ L ++ ++
Sbjct: 178 ISPLLWKKIARGLSAGRVQSVAVRIIADRESIIKNFVPEEYWKLDVSLISQDKKKINM-- 235
Query: 562 FPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQ 621
+TH+ +K+ ++ E +KI ++ V ++ K P P+ITSTLQ
Sbjct: 236 ---DVTHYNNKKFRPIN---ENEVSFAVEKIQKSSCIVKNYEEKISYLKAPAPFITSTLQ 289
Query: 622 QDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFE 681
Q A+ +L FS TM LAQKLYE G ITYMRTD ++S+ A K++R I
Sbjct: 290 QSASLRLGFSVKKTMFLAQKLYE---------EGYITYMRTDSNYLSEYAIKKVRKYIKS 340
Query: 682 RYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRT 741
YGS++ P+E P Y + K++QEAHEAIRP+DI+ + + S L+ KLY LIW++
Sbjct: 341 NYGSNYLPKE-PNIYSNE-KHSQEAHEAIRPSDIK-IKNIDSDHLNSSAKKLYELIWNQF 397
Query: 742 MACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDR 801
+A QM+ I V + + + S V F G+ EE +
Sbjct: 398 LASQMKSVKYKSITVTV--LADMFKLQKSERIVMFQGWNKVLI------------EEKNV 443
Query: 802 HEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKV 861
F IL +TG L++ +V Q T+PP R+SE SLV++LE+ GIGRPSTY++
Sbjct: 444 FSQFPIL---QTGSQLFINKVTPSQKFTKPPPRFSEASLVRELEKKGIGRPSTYSAITSK 500
Query: 862 LQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGL 921
+QDR YV +K Y E G +++ L FS + DY+FTA ME +LD V+ W+ L
Sbjct: 501 IQDRGYVKIKKNKFYAEKMGEILTIRLKKSFSNLIDYNFTAHMEKKLDQVAENKVTWRYL 560
Query: 922 LVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVC----GEGTLIF 977
L D++ +FS + Q +K E+ G L +P +CP+C G T I
Sbjct: 561 LDDFFKKFSE--------QLEQAKKSPEEG-GMELNNIVPT-SLNCPICCKKMGIKTAI- 609
Query: 978 KVSRFGAGYFIGC 990
G F+ C
Sbjct: 610 ------TGVFLSC 616
>sp|P47368|TOP1_MYCGE DNA topoisomerase 1 OS=Mycoplasma genitalium (strain ATCC 33530 /
G-37 / NCTC 10195) GN=topA PE=3 SV=1
Length = 709
Score = 339 bits (869), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 222/683 (32%), Positives = 350/683 (51%), Gaps = 71/683 (10%)
Query: 350 KSVVVVESVTKAKVIQGYL-GDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAW 408
K++VV+ES K K ++ YL D +E++ + GH+R++ ++ ++ ++ +WE W
Sbjct: 3 KNLVVIESPNKVKTLKQYLPSDEFEIVSTVGHIREMVYKNFGF-DENTYTPIWE----DW 57
Query: 409 T----------HL-------KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDAL 451
T HL KSIK S A+N+ LASDPDREGEAI+WH+ ++L Q+D
Sbjct: 58 TKNKQKNPKQKHLLSKFEIIKSIKAKASDAQNIFLASDPDREGEAISWHVYDLLDQKDKA 117
Query: 452 HENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLP 511
R+ F+EIT+ ++ AL+ R ID N V++ AR+ LD +IGF +S LL L
Sbjct: 118 K----CKRITFNEITKKAVVDALKQPRNIDLNWVESQFARQILDRMIGFRLSRLLNSYLQ 173
Query: 512 GCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSL--DTFSFPAHLTHF 569
+SAGRVQS AL + +RE EI +F P+ +WTV+ +L+K+ + + S P L
Sbjct: 174 A-KSAGRVQSVALRFLEEREKEIAKFVPRFWWTVDVLLNKENNQKVVCANKSIPLVLREI 232
Query: 570 QSKRLNQLSI----GSHTEAKDIEQKINSANF--------QVIKNSKRSMVRKNPTP-YI 616
+ L + + D + ++ F +V + + +P P Y
Sbjct: 233 NPELSASLKLDFEAAENVSGIDFLNEASATRFANQLTGEYEVYFIDEPKIYYSSPNPVYT 292
Query: 617 TSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIR 676
T++LQ+DA NKL +S+ +AQ+LYEG+ + +G LI+Y RTD + IS++ E
Sbjct: 293 TASLQKDAINKLGWSSKKVTMVAQRLYEGISV-NGKQTALISYPRTDSIRISNQFQSECE 351
Query: 677 SLIFERYGSHHAPEEGPRKYFKK-VKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYS 735
I + +GSH+ ++ K KK K Q+AHE I PT I P L + D LY
Sbjct: 352 KYIEKEFGSHYLADKNKLKRHKKDEKIIQDAHEGIHPTYITITPNDLKNGVKRDEFLLYR 411
Query: 736 LIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKE 795
LIW RT+A M A + V N F +S + F G+Q YE++
Sbjct: 412 LIWIRTVASLMADAKTSRTIVRFINQKNK--FYTSSKSLLFDGYQRLYEEI--------- 460
Query: 796 NEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTY 855
+ N + E + L+ LK GD ++ + +H T PP RY++ SL+++LE+ IGRPSTY
Sbjct: 461 -KPNTKDELYIDLSKLKIGDKFSFEKISVNEHKTNPPPRYTQASLIEELEKSNIGRPSTY 519
Query: 856 ASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGL 915
+ V +R Y + +R Y G V+ LS +F V + FT ME LD ++
Sbjct: 520 NTMASVNLERGYANLVNRFFYITELGEKVNNELSKHFGNVINKEFTKKMEKSLDEIAENK 579
Query: 916 TEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTL 975
++ L +W+ F S A++ I +V+K E +R CP C + L
Sbjct: 580 VNYQEFLKQFWTNFKSDVKLAEN-SIQKVKKEKELV------------ERDCPKCNQ-PL 625
Query: 976 IFKVSRFGAGYFIGCNQHPRCNY 998
+++ ++ G F+GC+ P+C Y
Sbjct: 626 VYRYTKRGNEKFVGCSDFPKCKY 648
>sp|Q5UQB5|TOP1P_MIMIV DNA topoisomerase 1 type prokaryotic OS=Acanthamoeba polyphaga
mimivirus GN=TOP1P PE=1 SV=1
Length = 854
Score = 326 bits (835), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 275/876 (31%), Positives = 416/876 (47%), Gaps = 146/876 (16%)
Query: 352 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 411
++++ES K I LG Y V S GH RDL + S+ D+DF V+ V +
Sbjct: 4 LILLESPGKISKISSILGKNYVVKASMGHFRDLDPKKMSIDFDNDFEPVYIVTKPDV--V 61
Query: 412 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 471
K++K A+ + + LA+D DREGEAIA + ++L+ + R+ F+ IT+ +I
Sbjct: 62 KNLKSAMKNIDLVYLAADEDREGEAIAQSLYDVLKPSN-------YKRLRFNAITKDAIM 114
Query: 472 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 531
A++ A +ID NLV A ARR LD L G+ ISP+L R++ G SAGRVQS + +I D+E
Sbjct: 115 SAIKNAGDIDKNLVDAQKARRVLDRLFGYLISPILQRQIGGKLSAGRVQSVTVRIIIDKE 174
Query: 532 MEIDEFKPQE----YWTVEAVLDKKES---HSLDTFSFPAHLTHFQSKRLNQLSIGS--- 581
EI F + Y+ V + ++ S D F T ++ K I S
Sbjct: 175 NEIKNFINKNADSSYFKVSGTFNGAKATLHESNDKKPFDLE-TAYKGKTAQIALINSENP 233
Query: 582 HTEAKDIEQKINSANFQVIKNSKRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQ 640
+++ + ++ + F I + + M ++P P+ TSTLQQ+A K S TMK AQ
Sbjct: 234 NSKVVNFMKRCLKSQF-FIHSVEDKMTTRSPAPPFTTSTLQQEANRKFGMSIDSTMKTAQ 292
Query: 641 KLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKV 700
KLYEG G ITYMRTD + IS E ++I+ +I ++YG+ + + Y K
Sbjct: 293 KLYEG---------GYITYMRTDSVEISAEGHRDIKKIITDQYGADYYQK---NLYKNKA 340
Query: 701 KNAQEAHEAIRPTDIRRLPAMLS---GLLDEDCLKLYSLIWSRTMACQMQPA--TVGQIQ 755
N+QEAHEAIRPT P +L+ + D +KLY LIW RT+A QM+PA V IQ
Sbjct: 341 ANSQEAHEAIRPTH----PELLTLEGEIEDAYQIKLYKLIWQRTIASQMKPAKIKVTIIQ 396
Query: 756 VDIGNADESIV-----FRSSCSRVEFLGFQAAY-EDVDAGAIRYKENEENDRHEAFAILN 809
+ I E + F+S V F GF Y E +D + + D
Sbjct: 397 ISISKYVEDKLNPFYYFQSQIETVVFPGFMKVYVESID--------DPDTDNQITKNFTG 448
Query: 810 SLKT-GDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYV 868
+ T G + + E+ +Q + +PP RYSE SLVKKLEELGIGRPSTY +T+K + +R YV
Sbjct: 449 KIPTVGSKVTMEEIIARQEYMRPPPRYSEASLVKKLEELGIGRPSTYVNTIKTIINREYV 508
Query: 869 TV-------------------------------------KSRILYPEFRGRMVSAFLSHY 891
+ +++ + P G V+ FL Y
Sbjct: 509 KITDVPGIKKDITIYSIKSENKKHIMEVYEDTDTILLGKENKKIVPTNLGITVNDFLMKY 568
Query: 892 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCT--CAQSLHIHQVEKML- 948
F E DY FTA+MET+LD VS G W ++ D++ + Q E++L
Sbjct: 569 FPEFLDYKFTANMETDLDYVSTGTKNWVDIVQDFYDKLKPIVDELSKQKGLSQSSERLLG 628
Query: 949 EKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDD 1008
E G+ + A+ K + PV + + G Y + P TL
Sbjct: 629 EDNDGNEITAT---KTKFGPVVRK--------KIGDKYVYAKIKDPL------TL----- 666
Query: 1009 EEDTLQRNTNV---DEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHI 1065
DT++ + + + PK +G + VLL+ G YGFY+ Y + S+ I
Sbjct: 667 --DTIKLSDAIKLLEYPKNLGQYKGF--DVLLQKGDYGFYL-------SYNKENFSLGEI 715
Query: 1066 KDVDSITLEDALELLRYP-------VNLGNHPKDGQPIMLRLARAGFSVRHRRTIAS--- 1115
D + I L+ A++ + NL + K + I+L + G+ V+ R
Sbjct: 716 DDPEDINLDTAIKAIEAKKANNIAEFNLTENGKKIKAIVLN-GKYGYYVQVTRNRIKKNY 774
Query: 1116 -VPKNMKPNDVTLEKALEFLSGKDVRRCGRPKGKPK 1150
+PK++ PN++T ++ L +S K + PKG K
Sbjct: 775 PIPKDLDPNNLTEQQILSIISVKKTYKKSAPKGGSK 810
>sp|Q8K9P7|TOP1_BUCAP DNA topoisomerase 1 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=topA PE=3 SV=1
Length = 853
Score = 320 bits (821), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 217/606 (35%), Positives = 317/606 (52%), Gaps = 71/606 (11%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRP---------DDDFSMV 400
KS+V+VES KAK I YLG Y V S GHVRDL + ++ +++
Sbjct: 3 KSLVIVESPVKAKTISKYLGKQYIVKSSVGHVRDLINNKSKNKKNIKKSNIKHNEKTALI 62
Query: 401 WEVPSAAWTHLKSIKVALSGAENLI--------------LASDPDREGEAIAWHIVEMLQ 446
++ + + K+ L G E +I LA+D DREGEAIAWH+ E++
Sbjct: 63 QQMGINPYKNWKAEYHILPGKEKIISELKNIANKVHYIYLATDLDREGEAIAWHLKEVIG 122
Query: 447 QQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLL 506
++ RVVF+EIT+ SI+ A Q +I+ N V + ARR +D ++G+ ISPLL
Sbjct: 123 GN-----SLKFRRVVFNEITKKSIEKAFQNIGKINMNRVYSQQARRFMDRIVGYMISPLL 177
Query: 507 WRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHL 566
W+K+ SAGRVQSAA+ LI DRE EI F +E+W + L KE+ + +
Sbjct: 178 WKKISRGLSAGRVQSAAVRLITDREYEIKNFIEREHWKISLSLLSKENKKV-----TMDI 232
Query: 567 THFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAAN 626
TH+++K + + E +KI + +F + + +K P P ITSTLQQ +
Sbjct: 233 THYRNK---TFLLNNKKEVNSTIEKIKNLSFIITDRKDKIFKKKPPAPLITSTLQQASNI 289
Query: 627 KLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSH 686
L FS TM LAQKLYE G ITY+RTD +S+ A +++RS I YGS
Sbjct: 290 DLGFSVKKTMFLAQKLYE---------QGYITYIRTDSYFLSNYAIEKVRSYIENFYGSD 340
Query: 687 HAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQM 746
P++ + K +QEAHEAIRP+D++ + D D KLY LIW+ +A QM
Sbjct: 341 FLPKKS--NIYSNQKYSQEAHEAIRPSDVQVVNI---DNCDPDAKKLYKLIWNYFIASQM 395
Query: 747 QPATVGQIQVDIGNADESIVFR--SSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEA 804
+ I+ + AD VF+ S+ V F G+ + + N+ +
Sbjct: 396 KSERYKSIKTTVM-AD---VFKLQSNTKIVLFSGWTKILK------------KSNNVNFK 439
Query: 805 FAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQD 864
F +L+ G L L ++ Q T+PP R+SE SLV++LE+ GIGRPSTYA+ + +++
Sbjct: 440 FPVLD---IGTTLILDKILPHQIFTKPPPRFSESSLVRELEKKGIGRPSTYATIITKIKE 496
Query: 865 RNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVD 924
+ Y+ +K Y G ++ L FS++ DY FTA ME LD VS L WK LL
Sbjct: 497 KGYLKIKKNKFYAAKIGEILITRLKKNFSDLVDYDFTARMEKNLDQVSDKLINWKHLLNS 556
Query: 925 YWSRFS 930
++ FS
Sbjct: 557 FFDNFS 562
>sp|P78032|TOP1_MYCPN DNA topoisomerase 1 OS=Mycoplasma pneumoniae (strain ATCC 29342 /
M129) GN=topA PE=3 SV=1
Length = 711
Score = 318 bits (816), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 220/690 (31%), Positives = 341/690 (49%), Gaps = 79/690 (11%)
Query: 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWT 409
K++VV+ES K K +Q YL + +E++ + GH+R++ ++ + D+S VWE WT
Sbjct: 3 KNLVVIESPNKVKTLQKYLPNDFEIVSTIGHIREMVHKNFGFN-EADYSPVWE----DWT 57
Query: 410 H-------------------------LKSIKVALSGAENLILASDPDREGEAIAWHIVEM 444
+KSIK S A N+ LA+DPDREGEAI+WH+ ++
Sbjct: 58 KSKKKFSSLSFKGNLKGKKLLSKYDIIKSIKEKASKATNIYLATDPDREGEAISWHVYDV 117
Query: 445 LQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISP 504
L ++D R+ F+EIT+ ++ AL+ REID + VQ+ AR+ LD +IGF +S
Sbjct: 118 LDEKDKS----KCQRITFNEITKNAVLDALKNPREIDQSWVQSQFARQILDRMIGFRLSR 173
Query: 505 LLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKES---HSLDTFS 561
LL L +SAGRVQS AL + +RE EI F P+ +WT++ +L+ K + S
Sbjct: 174 LLNNYLSA-KSAGRVQSVALRFLEEREQEIRSFVPRFWWTLDVLLNPKAEGVREACANRS 232
Query: 562 FP-----------AHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRK 610
P A L + K ++ + AK +++ F+V +
Sbjct: 233 IPIVLREINPALRAGLKFEEEKSVSGIDFLDEASAKKFGEQLKGV-FEVYNIDETKHYSS 291
Query: 611 NP-TPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISD 669
+P + Y T++LQ+DA NKL +S+ +AQ LYEGV + +G LI+Y RTD +S
Sbjct: 292 SPNSAYTTASLQKDAINKLGWSSKKVTLIAQHLYEGVSI-NGEQTALISYPRTDSTRLSA 350
Query: 670 EAAKEIRSLIFERYGSHHAPEEGPRKYFKK-VKNAQEAHEAIRPTDIRRLPAMLSGLLDE 728
+ + + I YG + KK K Q+AHEAI PTDI P M+ + +
Sbjct: 351 QFQQSCKEYILNHYGEKYLSNRIVSAKGKKGEKIIQDAHEAIHPTDINITPEMVKNAIKK 410
Query: 729 DCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDA 788
D LY LIW RT+A M + N D + + SS S V F G++ YE
Sbjct: 411 DEFLLYRLIWIRTVASLMADCKKSHTHIRFIN-DGNKFYASSKSLV-FDGYRKIYE---- 464
Query: 789 GAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELG 848
++ E ND + L+ ++ GD ++++ T P ARY++ SL++ LE+
Sbjct: 465 ---HFENKESND---LYIDLDKIRVGDRFMAKDIKITARQTHPAARYTQASLIEALEKSN 518
Query: 849 IGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETEL 908
IGRPSTY + V DR Y ++ + G V+ LS +F ++ + FT +ME L
Sbjct: 519 IGRPSTYNTMASVNLDRGYASLNKHAFHVTQLGEQVNEELSKHFGKIINKEFTKNMEKSL 578
Query: 909 DNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCP 968
D ++ ++ L D+WS F A+ I +V+K EK F R CP
Sbjct: 579 DEIAENKKNYQEFLRDFWSNFKEEVKLAEG-SIQRVKK--EKEFV----------GRDCP 625
Query: 969 VCGEGTLIFKVSRFGAGYFIGCNQHPRCNY 998
C L+++ ++ G F+GC+ P C Y
Sbjct: 626 SCA-SPLLYRYTKRGNEKFVGCSNFPNCKY 654
>sp|O51768|TOP1_BORBU DNA topoisomerase 1 OS=Borrelia burgdorferi (strain ATCC 35210 / B31
/ CIP 102532 / DSM 4680) GN=topA PE=3 SV=1
Length = 848
Score = 300 bits (767), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 252/843 (29%), Positives = 414/843 (49%), Gaps = 115/843 (13%)
Query: 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSG--------------SVRPD 394
K +++VES TKAK I+ +L + + V GHV DL + S+ +
Sbjct: 3 NKKLIIVESPTKAKTIKKFLDESFLVEACIGHVVDLPNNAKEIPKEYKKYEWANISIDYN 62
Query: 395 DDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHEN 454
+ F+ ++ +PS + +K + + LA+D DREGE IA+H+ E+L+ ++
Sbjct: 63 NGFNPIYIIPSNKKPIVSKLKKLVKTINEIYLATDQDREGETIAFHLKEVLKIKN----- 117
Query: 455 ITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQ 514
R++FHEITE +I +L+ R ID NLV A ARR LD L G+ ISPLLW+K+
Sbjct: 118 --YKRMIFHEITETAITESLKNTRNIDMNLVNAGEARRILDRLYGYTISPLLWKKVAYGL 175
Query: 515 SAGRVQSAALSLICDREMEIDEFKPQEYWTV-------------EAVLDKKESHSL---- 557
SAGRVQS L L+ ++E FK Y+++ EA L++ + ++
Sbjct: 176 SAGRVQSVGLKLLIEKEKTRINFKKANYYSILLQCKHEKKNLLLEAKLEEIDGKNIAEGK 235
Query: 558 DTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKI-NSANFQVIKNSKRSMVRKNPTPYI 616
D + L K + + +I + ++E+++ N ++I + + P P+
Sbjct: 236 DFVNETGKL-----KNIAKTTIITQDLMIELEKELKNGQKIELISIETKKIKIPPPKPFT 290
Query: 617 TSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIR 676
TSTLQQ+ +L M+ AQKLYE G ITYMRTD +I+ A +I
Sbjct: 291 TSTLQQEINKRLKIGTKQIMQHAQKLYE---------HGYITYMRTDSHNIAKIAKDKIT 341
Query: 677 SLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSL 736
+I +YG + E+ + ++K K AQ AHEAIRP++I +P + + ++Y +
Sbjct: 342 KIIKNKYGKEYIEEKD--RIYEKEKMAQNAHEAIRPSEIF-IPNETIEIESKTAKEIYKI 398
Query: 737 IWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKEN 796
IW RT+ M+ A I++ ++++FRSS +++ F GF K
Sbjct: 399 IWDRTIISGMKDAIKENIKLTF--KYKNLIFRSSFTKIIFDGF-------------LKHT 443
Query: 797 EENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYA 856
+E D H + +K GD + +++ +H T+ P RY+E SLV+K+E+ GIGRPSTY+
Sbjct: 444 KEQDEHLNIN-FDLIKKGDTFSIVKMKTSEHETKAPFRYTEASLVQKMEKEGIGRPSTYS 502
Query: 857 STLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLT 916
+ + L +R Y + L P +G V L YF + + +FT++ME +LD ++ G
Sbjct: 503 TIISTLLEREYAFKLNNTLMPTIKGAAVINLLEKYFPVLIELNFTSNMEEKLDKIAIGKL 562
Query: 917 EWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFAS--LPNKDRSCPVCGEGT 974
+ + Y S+F + + + Q+E ++ + ++ S + NK+ G
Sbjct: 563 DK----IKYLSKFYNGKKGLKDT-VMQLEPKIDSSEFRTVIESQKIENKNSINYTINIGK 617
Query: 975 ----LIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPA 1030
LIFK G Y I + P N LY D+ E + N +P ++G P
Sbjct: 618 YGPYLIFK----GHNYSINA-KTPLEN-----LYKKDEIEKII--NEKELKPNILGVDPL 665
Query: 1031 SKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIK----------------DVDSITLE 1074
+ V+ K+ YG VQLGED + P+ + D ++ITLE
Sbjct: 666 TGLNVIFKNTIYGNIVQLGED--THAPQEYTKKGKPKKLKIIKAKKASTKKIDPENITLE 723
Query: 1075 DALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRR-TIA-SVPKNMKPNDVTLEKALE 1132
AL+LL P +G HP+ + I+ G ++ +IA S+ K++K D+TL+KA+
Sbjct: 724 LALKLLSLPKPIGKHPQTNEQIIAATGVFGDYIKTESGSIACSLKKDLKAYDITLDKAIS 783
Query: 1133 FLS 1135
L+
Sbjct: 784 LLN 786
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,640,115
Number of Sequences: 539616
Number of extensions: 17401596
Number of successful extensions: 57213
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 309
Number of HSP's that attempted gapping in prelim test: 54577
Number of HSP's gapped (non-prelim): 1868
length of query: 1158
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1029
effective length of database: 121,958,995
effective search space: 125495805855
effective search space used: 125495805855
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)