Query 001100
Match_columns 1158
No_of_seqs 415 out of 2531
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 11:03:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gai_A DNA topoisomerase I; zi 100.0 2E-143 7E-148 1307.2 48.4 626 349-1043 5-630 (633)
2 1mw9_X DNA topoisomerase I; de 100.0 7E-134 2E-138 1216.7 53.3 547 348-934 1-576 (592)
3 1i7d_A DNA topoisomerase III; 100.0 4E-130 1E-134 1193.5 48.0 574 350-983 1-634 (659)
4 4ddu_A Reverse gyrase; topoiso 100.0 3E-115 1E-119 1121.1 47.0 507 346-934 538-1102(1104)
5 1gku_B Reverse gyrase, TOP-RG; 100.0 1E-110 5E-115 1076.1 42.8 491 346-930 502-1051(1054)
6 2fcj_A Small toprim domain pro 96.1 0.02 7E-07 55.7 9.1 103 348-479 3-106 (119)
7 1vdd_A Recombination protein R 95.6 0.0086 2.9E-07 63.9 5.0 107 350-480 80-196 (228)
8 2gai_A DNA topoisomerase I; zi 94.3 0.011 3.7E-07 72.6 1.4 54 815-869 225-287 (633)
9 3vdp_A Recombination protein R 91.7 0.33 1.1E-05 51.4 7.7 107 350-478 94-210 (212)
10 1t6t_1 Putative protein; struc 82.7 0.93 3.2E-05 44.0 4.0 68 350-447 21-88 (118)
11 1tbx_A ORF F-93, hypothetical 81.2 0.67 2.3E-05 42.3 2.3 54 835-889 23-81 (99)
12 4aik_A Transcriptional regulat 79.4 2.8 9.7E-05 41.4 6.4 51 835-889 47-104 (151)
13 3g3z_A NMB1585, transcriptiona 70.9 3.5 0.00012 39.7 4.4 51 835-889 46-103 (145)
14 3nrv_A Putative transcriptiona 69.7 2.6 8.8E-05 40.7 3.2 52 834-889 54-112 (148)
15 3jw4_A Transcriptional regulat 69.0 2.9 9.8E-05 40.5 3.3 53 833-889 56-115 (148)
16 3f3x_A Transcriptional regulat 68.2 3.1 0.00011 40.0 3.4 50 836-889 52-108 (144)
17 3eco_A MEPR; mutlidrug efflux 66.4 3.5 0.00012 39.3 3.3 53 833-889 46-105 (139)
18 3e6m_A MARR family transcripti 66.1 3.6 0.00012 40.6 3.4 50 836-889 69-125 (161)
19 2fbk_A Transcriptional regulat 66.0 6.3 0.00022 39.7 5.3 53 833-889 85-144 (181)
20 3deu_A Transcriptional regulat 65.6 5.1 0.00017 39.9 4.5 51 835-889 69-126 (166)
21 3bpv_A Transcriptional regulat 63.0 7.5 0.00026 36.7 4.9 51 835-889 44-101 (138)
22 1r7j_A Conserved hypothetical 62.7 2.8 9.4E-05 38.8 1.7 46 844-890 27-72 (95)
23 3kp7_A Transcriptional regulat 61.7 6.4 0.00022 38.1 4.3 51 835-889 52-111 (151)
24 3s2w_A Transcriptional regulat 61.4 5.7 0.00019 38.9 3.8 51 835-889 65-122 (159)
25 3oop_A LIN2960 protein; protei 59.2 5.2 0.00018 38.3 3.1 50 836-889 53-109 (143)
26 3boq_A Transcriptional regulat 59.1 7.1 0.00024 38.0 4.1 51 835-889 63-120 (160)
27 3k0l_A Repressor protein; heli 59.0 6.9 0.00024 38.5 4.0 51 835-889 61-118 (162)
28 3nqo_A MARR-family transcripti 58.1 7.3 0.00025 39.7 4.1 52 834-889 57-115 (189)
29 3cdh_A Transcriptional regulat 58.0 10 0.00035 36.7 5.0 51 835-889 58-115 (155)
30 2hr3_A Probable transcriptiona 57.9 11 0.00037 36.0 5.1 51 835-889 51-108 (147)
31 3zy2_A Putative GDP-fucose pro 57.5 18 0.0006 41.2 7.3 37 406-446 263-301 (362)
32 1lj9_A Transcriptional regulat 56.3 7.2 0.00025 37.2 3.5 51 835-889 44-101 (144)
33 2eth_A Transcriptional regulat 55.9 7.1 0.00024 38.0 3.4 51 835-889 59-116 (154)
34 3bro_A Transcriptional regulat 55.8 11 0.00037 35.7 4.6 52 834-889 50-108 (141)
35 2qq9_A Diphtheria toxin repres 55.7 16 0.00054 38.6 6.4 63 847-921 34-97 (226)
36 2a61_A Transcriptional regulat 54.9 8.8 0.0003 36.5 3.9 51 835-889 48-105 (145)
37 3bja_A Transcriptional regulat 54.9 9.8 0.00033 35.8 4.2 50 836-889 49-105 (139)
38 3ech_A MEXR, multidrug resista 54.1 5 0.00017 38.4 2.0 51 835-889 52-109 (142)
39 2fa5_A Transcriptional regulat 53.9 7.3 0.00025 38.0 3.2 51 835-889 64-121 (162)
40 2fbh_A Transcriptional regulat 53.5 11 0.00038 35.8 4.3 51 835-889 53-110 (146)
41 2qww_A Transcriptional regulat 50.6 10 0.00034 36.7 3.5 51 835-889 56-115 (154)
42 3fm5_A Transcriptional regulat 49.3 6.1 0.00021 38.2 1.7 51 835-889 55-112 (150)
43 1twf_I B12.6, DNA-directed RNA 49.0 24 0.00082 34.1 5.8 31 965-999 5-35 (122)
44 4hbl_A Transcriptional regulat 48.9 7 0.00024 37.9 2.1 51 835-889 56-113 (149)
45 3h0g_I DNA-directed RNA polyme 48.5 16 0.00056 34.8 4.5 27 965-992 5-31 (113)
46 2x4h_A Hypothetical protein SS 47.7 11 0.00039 35.9 3.4 50 835-888 32-81 (139)
47 3bj6_A Transcriptional regulat 47.6 15 0.0005 35.3 4.2 51 835-889 55-112 (152)
48 2rdp_A Putative transcriptiona 46.8 12 0.00041 35.9 3.4 51 835-889 57-114 (150)
49 2pg4_A Uncharacterized protein 46.1 7 0.00024 35.3 1.5 51 835-889 31-87 (95)
50 4b8x_A SCO5413, possible MARR- 45.6 5.9 0.0002 38.8 1.0 50 836-889 53-109 (147)
51 2frh_A SARA, staphylococcal ac 45.5 4.5 0.00015 38.6 0.1 51 835-889 54-111 (127)
52 1mw9_X DNA topoisomerase I; de 45.1 11 0.00039 45.8 3.5 55 814-869 263-318 (592)
53 3u2r_A Regulatory protein MARR 44.5 7.1 0.00024 38.7 1.3 51 835-889 63-120 (168)
54 2pex_A Transcriptional regulat 44.2 8.2 0.00028 37.3 1.7 50 835-888 62-118 (153)
55 1s3j_A YUSO protein; structura 44.0 14 0.00047 35.7 3.3 50 836-889 53-109 (155)
56 3cjn_A Transcriptional regulat 43.5 12 0.00042 36.5 2.9 51 835-889 67-124 (162)
57 1jgs_A Multiple antibiotic res 42.0 13 0.00044 35.1 2.7 50 836-889 50-106 (138)
58 3hsr_A HTH-type transcriptiona 41.3 11 0.00038 36.0 2.2 51 835-889 51-108 (140)
59 2bv6_A MGRA, HTH-type transcri 41.2 17 0.00059 34.4 3.5 51 835-889 52-109 (142)
60 3bdd_A Regulatory protein MARR 40.9 15 0.0005 34.7 2.9 50 835-888 46-103 (142)
61 2gxg_A 146AA long hypothetical 40.7 17 0.00059 34.5 3.4 51 835-889 51-108 (146)
62 2nyx_A Probable transcriptiona 40.6 15 0.00052 36.3 3.1 50 836-889 61-117 (168)
63 2fxa_A Protease production reg 39.5 9.4 0.00032 39.7 1.4 52 836-891 64-122 (207)
64 2hzt_A Putative HTH-type trans 38.1 18 0.00063 33.4 3.0 50 837-889 30-86 (107)
65 1sfx_A Conserved hypothetical 37.8 34 0.0012 30.5 4.8 51 835-889 35-91 (109)
66 2qvo_A Uncharacterized protein 37.5 11 0.00037 34.2 1.3 51 835-889 31-85 (95)
67 3tgn_A ADC operon repressor AD 36.5 18 0.00062 34.4 2.8 51 835-889 52-109 (146)
68 1fx7_A Iron-dependent represso 36.1 17 0.00059 38.4 2.8 47 838-888 28-75 (230)
69 3df8_A Possible HXLR family tr 34.6 19 0.00064 33.8 2.5 55 832-889 40-97 (111)
70 2esh_A Conserved hypothetical 34.1 45 0.0016 31.4 5.1 51 835-885 27-90 (118)
71 2fbi_A Probable transcriptiona 34.0 13 0.00043 35.2 1.2 51 835-889 51-108 (142)
72 4fx0_A Probable transcriptiona 33.9 32 0.0011 33.5 4.2 51 834-888 52-108 (148)
73 4ddu_A Reverse gyrase; topoiso 31.9 28 0.00096 45.5 4.3 55 814-869 795-850 (1104)
74 1i7d_A DNA topoisomerase III; 31.8 29 0.00098 42.8 4.1 55 814-869 271-327 (659)
75 1z91_A Organic hydroperoxide r 31.5 14 0.0005 35.1 1.2 41 847-888 64-111 (147)
76 1okr_A MECI, methicillin resis 31.4 9.8 0.00034 35.6 -0.1 54 835-889 25-84 (123)
77 1nui_A DNA primase/helicase; z 30.9 50 0.0017 35.3 5.4 75 349-446 150-224 (255)
78 2h09_A Transcriptional regulat 30.6 30 0.001 33.7 3.4 51 835-889 55-106 (155)
79 2nnn_A Probable transcriptiona 29.7 16 0.00054 34.4 1.1 50 835-888 53-109 (140)
80 2p8t_A Hypothetical protein PH 29.6 16 0.00056 38.4 1.2 55 838-896 34-88 (200)
81 1on2_A Transcriptional regulat 27.7 19 0.00065 34.5 1.3 50 835-888 23-73 (142)
82 3ri2_A Transcriptional regulat 27.6 46 0.0016 32.1 3.9 50 837-886 36-94 (123)
83 2fiy_A Protein FDHE homolog; F 27.1 56 0.0019 36.5 5.1 35 963-1000 181-218 (309)
84 2wte_A CSA3; antiviral protein 26.4 20 0.00068 38.7 1.2 65 835-913 167-233 (244)
85 3hrs_A Metalloregulator SCAR; 26.0 21 0.00071 37.5 1.3 72 835-921 21-93 (214)
86 1p4x_A Staphylococcal accessor 25.7 20 0.0007 38.7 1.2 42 848-890 61-109 (250)
87 4esf_A PADR-like transcription 25.3 46 0.0016 31.7 3.4 50 837-886 27-87 (117)
88 3f8b_A Transcriptional regulat 25.1 50 0.0017 31.2 3.6 50 837-886 28-90 (116)
89 3qt1_I DNA-directed RNA polyme 25.1 25 0.00086 34.7 1.6 33 964-1000 24-56 (133)
90 2fsw_A PG_0823 protein; alpha- 24.0 21 0.00072 33.0 0.7 39 851-889 52-97 (107)
91 2jne_A Hypothetical protein YF 23.7 64 0.0022 30.2 3.8 54 1027-1112 34-89 (101)
92 1hsj_A Fusion protein consisti 23.1 19 0.00065 41.8 0.3 40 851-890 433-479 (487)
93 1gku_B Reverse gyrase, TOP-RG; 22.4 50 0.0017 42.8 4.1 53 816-869 755-808 (1054)
94 3cta_A Riboflavin kinase; stru 22.3 23 0.00078 37.3 0.7 45 845-890 35-83 (230)
95 4esb_A Transcriptional regulat 22.0 61 0.0021 30.7 3.6 50 838-887 26-86 (115)
96 2riq_A Poly [ADP-ribose] polym 21.9 38 0.0013 34.5 2.2 30 964-1000 78-111 (160)
97 3u7r_A NADPH-dependent FMN red 21.7 1.3E+02 0.0044 30.9 6.3 65 350-428 4-75 (190)
98 4ap5_A GDP-fucose protein O-fu 21.7 1.1E+02 0.0036 35.2 6.2 26 407-432 288-315 (408)
99 1z7u_A Hypothetical protein EF 21.6 36 0.0012 31.6 1.9 52 835-889 36-94 (112)
100 1yyv_A Putative transcriptiona 21.5 46 0.0016 32.2 2.7 39 851-889 62-107 (131)
101 3hrs_A Metalloregulator SCAR; 21.1 86 0.0029 32.7 4.8 51 621-680 23-73 (214)
102 1xma_A Predicted transcription 20.8 54 0.0019 32.4 3.0 50 836-886 56-119 (145)
103 3v7q_A Probable ribosomal prot 20.8 1.2E+02 0.0043 27.9 5.3 76 407-496 24-99 (101)
104 1qyp_A RNA polymerase II; tran 20.4 83 0.0028 26.1 3.6 14 963-976 14-27 (57)
105 1p4x_A Staphylococcal accessor 20.3 25 0.00085 38.0 0.5 51 834-888 174-231 (250)
106 2g9w_A Conserved hypothetical 20.2 62 0.0021 31.1 3.3 36 835-871 25-61 (138)
107 2xvc_A ESCRT-III, SSO0910; cel 20.0 55 0.0019 27.8 2.4 27 623-658 30-56 (59)
No 1
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=100.00 E-value=2.1e-143 Score=1307.16 Aligned_cols=626 Identities=35% Similarity=0.480 Sum_probs=515.7
Q ss_pred CCeEEEEecchHHHHHHhhcCCCEEEEeeccccccccccCCCCCCCCCCcceEecCcchHHHHHHHHHHhccCCeEEEcc
Q 001100 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILAS 428 (1158)
Q Consensus 349 ~k~LIIvEkPskAk~Ia~~LG~~y~V~~s~GHl~dL~~~~~~v~p~~~f~~~~~v~~~~~k~lk~Ik~l~k~ad~IIlAT 428 (1158)
++.|||||||+|||+|+++||++|+|+||+|||++|+.++.+|+++++|.+.|.+.+++++|++.|++++++|| |||||
T Consensus 5 mk~LvIaEkPs~Ak~Ia~~Lg~~y~Vt~s~GHl~~l~~~~~~~~~~~~f~p~~~~~~~~~~~~~~lk~l~k~ad-iiiAt 83 (633)
T 2gai_A 5 VKKYIVVESPAKAKTIKSILGNEYEVFASMGHIIDLPKSKFGVDLEKDFEPEFAVIKGKEKVVEKLKDLAKKGE-LLIAS 83 (633)
T ss_dssp --CEEEESCHHHHHHHHHHHGGGSEEEECCSCSEESCSSSCCEETTTTSEECCEECTTCHHHHHHHHHHHHHSC-EEECC
T ss_pred CcEEEEEeCHHHHHHHHHHhCCCCEEEecccccccCCccCCCCCcccCcCceEEECccHHHHHHHHHHHHhhCC-EEEcC
Confidence 36899999999999999999999999999999999999998999887798889888889999999999999999 99999
Q ss_pred CCCccccHHHHHHHHHHhhcccccCCccEEEEEEcccCHHHHHHHHHhcccccHhHHHHHHHHHHHhhhhhhcccHHHHh
Q 001100 429 DPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWR 508 (1158)
Q Consensus 429 DpDREGE~Ia~~Ile~l~~~~~~~~~k~vkRl~fs~lT~~aI~~A~~nlr~~d~~L~~A~~AR~~lD~LiG~nlSR~l~~ 508 (1158)
|||||||+|||||+++|+. +++|+|+|||+||+++|++||+||+++|++|++||+||+++|||||||+||+||+
T Consensus 84 D~DREGE~I~~~i~~~~~~------~~~v~R~~fs~iT~~aI~~a~~~~~~~~~~l~~A~~aR~~~D~lvG~n~Sr~l~~ 157 (633)
T 2gai_A 84 DMDREGEAIAWHIARVTNT------LGRKNRIVFSEITPRVIREAVKNPREIDMKKVRAQLARRILDRIVGYSLSPVLWR 157 (633)
T ss_dssp CSSHHHHHHHHHHHHHHTC------TTSSCBCCCSSCCHHHHHHHHHSCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHcCC------CCCeEEEEEccCCHHHHHHHHhCCCCCcHHHHHHHHHhhHHHHHhhHHHCHHHHH
Confidence 9999999999999999853 4799999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcccCCcchhHHHHHHHHHHHHHHhcCCcceEEEEEEEecCcCCCCCCceeeeeccccccccccccCcCCHHHHHHH
Q 001100 509 KLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 588 (1158)
Q Consensus 509 k~~~~lS~GRVQTPtL~LVveRe~EI~~Fkp~~Yw~I~a~~~~~~~~~~~g~~f~a~l~~~~~~k~~~~~i~d~~~Ae~i 588 (1158)
++++.+|+||||||||+|||+||+||++|+|++||.|.+.+. + |.+.| .++++ ++.++++|+++
T Consensus 158 ~~~~~lS~GRVQtptL~lIv~Re~eI~~F~p~~y~~i~~~~~--------~--~~a~~-~~~~~-----~~~~~~~a~~~ 221 (633)
T 2gai_A 158 NFKSNLSAGRVQSATLKLVCDREREILRFVPKKYHRITVNFD--------G--LTAEI-DVKEK-----KFFDAETLKEI 221 (633)
T ss_dssp HHSCCCTTHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEET--------T--EEEEE-CCSSC-----CCCCHHHHHHH
T ss_pred hhhcccccCccchHHHHHHHHHHHHHHhCCCcceEEEEEEEe--------e--EEEEE-ecCCc-----ccCCHHHHHHH
Confidence 999999999999999999999999999999999999999883 1 77777 33322 46699999999
Q ss_pred HHHHccCCeEEEEeeeeeeeecCCCCcchHHHHHHHHHhcCCCHHHHHHHHHHHhccccCCCCCeeEEEEEecCCCcCCC
Q 001100 589 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHIS 668 (1158)
Q Consensus 589 ~~~l~~~~~~V~~v~~k~~~~~PP~Pf~tstLQ~~AskklG~Sa~~Tm~iAQ~LYE~~k~~~g~~~GlITYPRTDS~~Ls 668 (1158)
. .+ ..++|.+|+.++++++||+||+|++||++||++|||||++||++||+|||+|+|+ +++.||||||||||++||
T Consensus 222 ~-~~--~~~~V~~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~tm~iaQ~LYE~~~~~-~~~~glITYpRTDs~~ls 297 (633)
T 2gai_A 222 Q-SI--DELVVEEKKVSVKKFAPPEPFKTSTLQQEAYSKLGFSVSKTMMIAQQLYEGVETK-DGHIAFITYMRTDSTRVS 297 (633)
T ss_dssp H-TC--CCEEEEEEEEEEEEECCCCCBCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCEECS-SSEECCBCCSCCSCCCCC
T ss_pred H-hC--CCeEEEEEEEEEEEecCCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHhhccccc-cCccceEEecCCCccccC
Confidence 9 77 6799999999999999999999999999999999999999999999999999997 568899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCccccccccccccCCCCCCCcccCChhhhhCCCCHHHHHHHHHHHHHHHHccCCC
Q 001100 669 DEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQP 748 (1158)
Q Consensus 669 ~~~~~~i~~~i~~~~g~~~~~~~~~r~~~~k~k~~qeAH~AI~PT~~~~~P~~l~~~Ls~dE~kLY~LI~rRfLAs~~~~ 748 (1158)
+++...++.+|...||..|.+ ..++.|..+ ++.|+||||||||.....|+.+...|+++|++||+||||||||+||+|
T Consensus 298 ~~~~~~~~~~i~~~~g~~~~~-~~~r~~~~~-~~~~~aH~AI~PT~~~~~p~~~~~~L~~~e~klY~LI~rrflA~~~~~ 375 (633)
T 2gai_A 298 DYAKEEARNLITEVFGEEYVG-SKRERRKSN-AKIQDAHEAIRPTNVFMTPEEAGKYLNSDQKKLYELIWKRFLASQMKP 375 (633)
T ss_dssp HHHHHHHHHHHHHHTCGGGBC----------------CCCCBCBSCTTSCHHHHTTTSCHHHHHHHHHHHHHHHHHTBCC
T ss_pred HHHHHHHHHHHHHHhhhhhcc-cCCccccCC-CCcCCCCCCcccccccCChhhhhhcCCHHHHHHHHHHHHHHHHHhCch
Confidence 999999999998889887775 345544332 445789999999987556776656799999999999999999999999
Q ss_pred cEEEEEEEEEEecCccEEEEEEeEEEEEcCceeeccccchhhhccccccchhhhhhHHhcCCCCCCCeeEeeeEEEeccc
Q 001100 749 ATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 828 (1158)
Q Consensus 749 a~~e~t~v~i~~~~~~~~F~asg~~i~~~Gw~~vy~~~~~~~~~~~e~~e~~~~~~~~~LP~l~~Gd~v~~~~~~i~e~~ 828 (1158)
|+|++|+|++.+.+++..|+++|++++++||++||... ++ ..||.|++||.+.+.++.+.+++
T Consensus 376 a~~~~t~v~~~~~~~~~~F~a~g~~i~~~G~~~vy~~~----------~~-------~~LP~l~~G~~~~~~~~~~~~~~ 438 (633)
T 2gai_A 376 SQYEETRFVLRTKDGKYRFKGTVLKKIFDGYEKVWKTE----------RN-------TGEFPFEEGESVKPVVVKIEEQE 438 (633)
T ss_dssp EEEEEEEEEEECTTSSCEEEEEEEEEEECGGGGTSCCC----------CC-------BCCCCCCTTCEECCCEEEEEEEE
T ss_pred heEEEEEEEEEEeCCCcEEEEEEEEEecCCHHHhhccc----------cc-------ccCCCcCCCCEEEEeEEEEeeee
Confidence 99999999998821235899999999999999999320 00 35999999999999999999999
Q ss_pred cCCCCCCCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcCcccccccccchhhhhhhcccccccChhhhHHHHHHh
Q 001100 829 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETEL 908 (1158)
Q Consensus 829 TkPP~ryTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~k~L~PT~lG~~v~~~L~~~f~~l~~p~~TA~~E~~L 908 (1158)
|+||+|||||+||++||+.|||||||||+||++|++|+||.++++.|+||++|+.|+++|+.+|+.|++|+|||+||++|
T Consensus 439 T~PP~ryTEasLi~~Me~~GIGtpaT~A~iI~~L~~R~Yv~~~~k~l~pT~~G~~l~~~l~~~~~~l~~~~~Ta~~E~~L 518 (633)
T 2gai_A 439 TKPKPRYTEGSLVKEMERLGIGRPSTYASTIKLLLNRGYIKKIRGYLYPTIVGSVVMDYLEKKYSDVVSVSFTAEMEKDL 518 (633)
T ss_dssp CCCCCCCCHHHHHHHHHHHTCCCTTTHHHHHHHHHHTTSEEEETTEEEEBHHHHHHHHHHHHHSTTTTSHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHhhccCCCCcccHHHHHHHHhhcCcEEEcCCEEEEChhHHHHHHHHHHhhhhhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCchHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHhhhcCcccCCCCCCCCCCCCCCCCeEEEEecccCceeEE
Q 001100 909 DNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFI 988 (1158)
Q Consensus 909 d~Ia~Gk~~~~~~L~~F~~~f~~~i~~~~~~~i~~V~e~l~~~~g~~~~~~~~~~~g~CPkCGkG~l~~k~gr~G~~~f~ 988 (1158)
|+|++|+.+|++||++|+..|...+..+............ ..-+.... .-....|.||+||.+.++.+.+++|. .|+
T Consensus 519 ~~I~~G~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~-c~cg~~~~-~k~g~~G~CP~Cg~g~l~~r~~k~G~-~f~ 595 (633)
T 2gai_A 519 DEVEQGKKTDKIVLREFYESFSSVFDRNDRIVVDFPTNQK-CSCGKEMR-LSFGKYGFYLKCECGKTRSVKNDEIA-VID 595 (633)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHTTCCTTCCCCCCEEEEEE-CTTSCEEE-EEEETTEEEEECSSSCCEECCTTSBC-EEE
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhcccch-hhcCceee-ecccccccCcccCCCcceeecccCCC-eEE
Confidence 9999999999999999999998776554221000000000 00000000 00012467999995578888888875 599
Q ss_pred ecCCCCCCcccccCCCCCCchhhhhhhccCCCCCcccCCCCCccceeeeccCCCc
Q 001100 989 GCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYG 1043 (1158)
Q Consensus 989 GCs~yP~C~~~~~~~~~e~~~~e~~~~~~~~~lPr~LG~cPkcG~~v~lk~GrfG 1043 (1158)
||++||+|+++.|..+. -..||+ |..++.+.+++|
T Consensus 596 gCs~yp~C~f~~~~~p~-------------------~~~Cp~-~~~l~~~~~~~g 630 (633)
T 2gai_A 596 DGKIFLGRKDSESGSPD-------------------GRSVEG-KGNLSEKRRKGK 630 (633)
T ss_dssp TTEEEC-------------------------------------------------
T ss_pred eCCCCcCCCCeecCCcc-------------------CCcCCC-CCeEEEEccCCC
Confidence 99999999998754321 124898 888877777765
No 2
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=100.00 E-value=6.9e-134 Score=1216.68 Aligned_cols=547 Identities=39% Similarity=0.649 Sum_probs=488.7
Q ss_pred CCCeEEEEecchHHHHHHhhcCCCEEEEeeccccccccccC-----------------------------CCCCCCCCCc
Q 001100 348 SGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARS-----------------------------GSVRPDDDFS 398 (1158)
Q Consensus 348 ~~k~LIIvEkPskAk~Ia~~LG~~y~V~~s~GHl~dL~~~~-----------------------------~~v~p~~~f~ 398 (1158)
|++.|||||||+|||+|+++||.+|+|+||+|||++|+.+. .+++|+++|.
T Consensus 1 M~k~LiIaEkPs~Ak~Ia~~Lg~~~~Vt~~~GHl~~L~~~~~~~~~~~~~~~~~p~~y~~~~~~~~~~~~l~i~p~~~f~ 80 (592)
T 1mw9_X 1 MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPKKDERGALVNRMGVDPWHNWE 80 (592)
T ss_dssp -CCEEEEESCHHHHHHHHTTSCTTEEEEECCSCCEESCC-----------------------CHHHHHHHHTEETTTTTE
T ss_pred CCceEEEEECHHHHHHHHHHhCCCcEEEeeccccccCCcccccccccccccccchhhhchhhhcccchhcCCcCccccCc
Confidence 67899999999999999999999999999999999998753 3466766788
Q ss_pred ceEecCcchHHHHHHHHHHhccCCeEEEccCCCccccHHHHHHHHHHhhcccccCCccEEEEEEcccCHHHHHHHHHhcc
Q 001100 399 MVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAR 478 (1158)
Q Consensus 399 ~~~~v~~~~~k~lk~Ik~l~k~ad~IIlATDpDREGE~Ia~~Ile~l~~~~~~~~~k~vkRl~fs~lT~~aI~~A~~nlr 478 (1158)
+.|.+.++++++++.|++++++||.||||||||||||+|||||+++|+. .+++|+|+|||+||+++|++||+|++
T Consensus 81 ~~~~~~~~k~~~~~~lk~l~k~ad~iiiAtD~DREGE~I~~~i~~~~~~-----~~~~v~R~~fs~iT~~aI~~A~~~~~ 155 (592)
T 1mw9_X 81 AHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVIGG-----DDARYSRVVFNEITKNAIRQAFNKPG 155 (592)
T ss_dssp ECCEECTTCHHHHHHHHHHHHTCSEEEECCCSSHHHHHHHHHHHHHHCS-----CGGGEEECCCSSCSHHHHHHHHHSCB
T ss_pred eeEEEcccHHHHHHHHHHHHhcCCeEEEcCCCCccccHHHHHHHHHhCC-----CCCCeEEEEEccCCHHHHHHHHhCCc
Confidence 8888888899999999999999999999999999999999999999863 23589999999999999999999999
Q ss_pred cccHhHHHHHHHHHHHhhhhhhcccHHHHhhCCCcccCCcchhHHHHHHHHHHHHHHhcCCcceEEEEEEEecCcCCCCC
Q 001100 479 EIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLD 558 (1158)
Q Consensus 479 ~~d~~L~~A~~AR~~lD~LiG~nlSR~l~~k~~~~lS~GRVQTPtL~LVveRe~EI~~Fkp~~Yw~I~a~~~~~~~~~~~ 558 (1158)
++|++|++||+||+++|||||||+||+||+++++.+|+||||||||+|||+||+||++|+|++||.|.+.+... .
T Consensus 156 ~~~~~l~~A~~aR~~~D~lvG~n~Sr~l~~~~~~~lS~GRVQtptL~lIv~Re~eI~~F~p~~y~~i~~~~~~~-----~ 230 (592)
T 1mw9_X 156 ELNIDRVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTP-----S 230 (592)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCCCTTHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECT-----T
T ss_pred cccHHHHHHHHHHHHHHHHhhHhhhHHHHhhhccccccCccchhHHHHHHHHHHHHHhCCCcceEEEEEEEecC-----C
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999532 2
Q ss_pred CceeeeeccccccccccccCcCCHHHHHHHHHHHccCCeEEEEeeeeeeeecCCCCcchHHHHHHHHHhcCCCHHHHHHH
Q 001100 559 TFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKL 638 (1158)
Q Consensus 559 g~~f~a~l~~~~~~k~~~~~i~d~~~Ae~i~~~l~~~~~~V~~v~~k~~~~~PP~Pf~tstLQ~~AskklG~Sa~~Tm~i 638 (1158)
+..|.+.|....++ .+++.++++|+.+.+.|++..++|.+|+.++++++||+||+|++||++||++|||||++||++
T Consensus 231 ~~~~~~~~~~~~~~---~~~~~~~~~a~~~~~~l~~~~~~V~~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~tm~i 307 (592)
T 1mw9_X 231 GEALALQVTHQNDK---PFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMM 307 (592)
T ss_dssp CCEEEEEEEEETTE---ECCCCSHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCBCHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CcEEEEEEEecCCc---ccccCCHHHHHHHHHHhcCCCeEEEEEEEEEEeccCCCCccHHHHHHHHHHhhCCCHHHHHHH
Confidence 34577777543332 356789999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCeeEEEEEecCCCcCCCHHHHHHHHHHHHHHhCCCCCCCCCCCccccccccccccCCCCCCCcccCC
Q 001100 639 AQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRL 718 (1158)
Q Consensus 639 AQ~LYE~~k~~~g~~~GlITYPRTDS~~Ls~~~~~~i~~~i~~~~g~~~~~~~~~r~~~~k~k~~qeAH~AI~PT~~~~~ 718 (1158)
||+|||+ ||||||||||++||+++++.++.+|...||..|.+ ..++.+.++ ++.|+||||||||.....
T Consensus 308 AQ~LYE~---------glITYpRTDs~~ls~~~~~~~~~~i~~~~g~~~~~-~~~~~~~~~-~~~~~aH~AI~PT~~~~~ 376 (592)
T 1mw9_X 308 AQRLYEA---------GYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLP-ESPNQYASK-ENSQEAREAIRPSDVNVM 376 (592)
T ss_dssp HHHHHHT---------TSBCCSCCCCCCCCHHHHHHHHHHHHHHTCGGGSC-SSCCCCC---------CCCBCBSCTTCC
T ss_pred HHHHHhC---------CeeeccCCCCCccCHHHHHHHHHHHHHhhhhhhcc-cCCccccCC-CCCCCCCCCEecccCccC
Confidence 9999996 89999999999999999999999999889887776 445555433 346889999999986555
Q ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHccCCCcEEEEEEEEEEecCccEEEEEEeEEEEEcCceeeccccchhhhccccccc
Q 001100 719 PAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEE 798 (1158)
Q Consensus 719 P~~l~~~Ls~dE~kLY~LI~rRfLAs~~~~a~~e~t~v~i~~~~~~~~F~asg~~i~~~Gw~~vy~~~~~~~~~~~e~~e 798 (1158)
|..+ ..|+++|++||+|||||||||||+||+|++|+|++.+++ +.|+++|++++++||++||+.... +++
T Consensus 377 ~~~l-~~Ls~~e~klY~LI~rrflA~~~~~a~~~~t~v~~~~~~--~~F~a~g~~i~~~Gw~~vy~~~~~------~~~- 446 (592)
T 1mw9_X 377 AESL-KDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGD--FRLKARGRILRFDGWTKVMPALRK------GDE- 446 (592)
T ss_dssp GGGC-SSCCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEETT--EEEEEEEEEEEECGGGGGSCCC----------C-
T ss_pred ccch-hhCCHHHHHHHHHHHHHHHHHhCchhEEEEEEEEEEECC--EEEEEEEEEEeeCChHHhcCcccc------ccc-
Confidence 6555 469999999999999999999999999999999999864 589999999999999999964311 001
Q ss_pred hhhhhhHHhcCCCCCCCeeEeeeEEEeccccCCCCCCCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcCcccccc
Q 001100 799 NDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPE 878 (1158)
Q Consensus 799 ~~~~~~~~~LP~l~~Gd~v~~~~~~i~e~~TkPP~ryTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~k~L~PT 878 (1158)
...||.|++||.+.+.++.+.+++|+||+||||++||++||+.|||||||||+||++|++|+||.++++.|+||
T Consensus 447 ------~~~LP~l~~G~~~~~~~~~~~~~~T~PP~ryTEasLi~~Me~~GIGtpATrA~iI~~L~~R~Yv~~~~k~l~pT 520 (592)
T 1mw9_X 447 ------DRILPAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAE 520 (592)
T ss_dssp ------CCCCCCCCTTCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHTTCCCTTTHHHHHHHHHHTTSEEEETTEEEEC
T ss_pred ------cccccccCCCCEeEeeEeEEeeeeccCCCCCCHHHHHHHHHhcCCCchhhHHHHHHHHHhcCceeecCCEeeec
Confidence 14599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhcccccccChhhhHHHHHHhhhhhcCCchHHHHHHHHHHHhhhhhh
Q 001100 879 FRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCT 934 (1158)
Q Consensus 879 ~lG~~v~~~L~~~f~~l~~p~~TA~~E~~Ld~Ia~Gk~~~~~~L~~F~~~f~~~i~ 934 (1158)
++|+.|+++|..+|+.|++|+|||.||.+||+|++|+.+|++||++|+..|...+.
T Consensus 521 ~~G~~l~~~L~~~~~~l~~~~~Ta~~E~~L~~I~~G~~~~~~~l~~~~~~~~~~~~ 576 (592)
T 1mw9_X 521 KMGEIVTDRLEENFRELMNYDFTAQMENNLDQVANHEAEWKAVLDHFFSDFTQQLD 576 (592)
T ss_dssp HHHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876543
No 3
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=100.00 E-value=3.6e-130 Score=1193.46 Aligned_cols=574 Identities=22% Similarity=0.294 Sum_probs=475.6
Q ss_pred CeEEEEecchHHHHHHhhc-------------CCCEEEEeeccccccccccC------CCCCCCCCC-----cceEecCc
Q 001100 350 KSVVVVESVTKAKVIQGYL-------------GDMYEVLPSYGHVRDLAARS------GSVRPDDDF-----SMVWEVPS 405 (1158)
Q Consensus 350 k~LIIvEkPskAk~Ia~~L-------------G~~y~V~~s~GHl~dL~~~~------~~v~p~~~f-----~~~~~v~~ 405 (1158)
|.|||||||+|||+|+++| |++|+|+||+|||++|+.|+ ..|+.+ ++ .+.|.+.+
T Consensus 1 M~LiIaEKPs~Ak~Ia~~L~g~~~r~~gy~e~g~~~~Vt~~~GHl~~L~~p~~y~~~~k~W~~~-~lpi~p~~~~~~v~~ 79 (659)
T 1i7d_A 1 MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYARWNLA-DLPIVPEKWQLQPRP 79 (659)
T ss_dssp CEEEEESSHHHHHHHHTTSCSCCEEETTEEEETTTEEEEECSSCSEEECCHHHHCGGGGSCCST-TCSCCCSSCCEEECG
T ss_pred CEEEEEECHHHHHHHHHHhcCCcccCCCcEeeCCCEEEEeccchhhcCCCccccchhccccccC-Ccccccccceeeecc
Confidence 5799999999999999999 88899999999999998753 233321 11 12466777
Q ss_pred chHHHHHHHHHHhccCCeEEEccCCCccccHHHHHHHHHHhhcccccCCccEEEEEEcccCHHHHHHHHHhccccc--Hh
Q 001100 406 AAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREID--AN 483 (1158)
Q Consensus 406 ~~~k~lk~Ik~l~k~ad~IIlATDpDREGE~Ia~~Ile~l~~~~~~~~~k~vkRl~fs~lT~~aI~~A~~nlr~~d--~~ 483 (1158)
++++|++.|++|+++||.||||||||||||+|||||+++|+.. .+.+++|+|+|||+||+++|++||+||++++ ++
T Consensus 80 ~~~~~~~~lk~l~k~ad~iiiAtD~DREGE~I~~~i~~~~~~~--~~~~~~v~R~~fs~iT~~aI~~A~~nlr~~~~~~~ 157 (659)
T 1i7d_A 80 SVTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQLA--PEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVP 157 (659)
T ss_dssp GGHHHHHHHHHHHHHCSEEEEECCSSHHHHHHHHHHHHHTTCC--HHHHHTCEECCCSCCSHHHHHHHHTTCEEGGGGHH
T ss_pred cHHHHHHHHHHHHhcCCeEEEcCCCCCCCCHHHHHHHHHhCcc--ccCCCceEEEEEccCCHHHHHHHHhCCCCcchhhh
Confidence 8899999999999999999999999999999999999998531 0114699999999999999999999999987 89
Q ss_pred HHHHHHHHHHHhhhhhhcccHHHHh-----hCCCcccCCcchhHHHHHHHHHHHHHHhcCCcceEEEEEEE-ecCcCCCC
Q 001100 484 LVQAYLARRALDYLIGFNISPLLWR-----KLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVL-DKKESHSL 557 (1158)
Q Consensus 484 L~~A~~AR~~lD~LiG~nlSR~l~~-----k~~~~lS~GRVQTPtL~LVveRe~EI~~Fkp~~Yw~I~a~~-~~~~~~~~ 557 (1158)
|++||+||+++|||||||+||+||. ++++++|+||||||||+|||+||+||++|+|++||.|.+.+ ..
T Consensus 158 l~~A~~aR~~~D~lvG~n~Sr~lt~~~r~~~~~~~lS~GRVQTPtL~lIv~Re~eI~~F~p~~yw~i~~~~~~~------ 231 (659)
T 1i7d_A 158 LCVSALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTP------ 231 (659)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCCCCCTTHHHHHHHHHHHHHHHHTCCCCEEEEEEEEEECT------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCceecCccccchHHHHHHHHHHHHhCCCcceEEEEEEEecC------
Confidence 9999999999999999999999987 34568999999999999999999999999999999999998 42
Q ss_pred CCceeeeecccccccc--c-cccCcCCHHHHHHHHHHHccCCeEEEEeeeeeeeecCCCCcchHHHHHHHHHhcCCCHHH
Q 001100 558 DTFSFPAHLTHFQSKR--L-NQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATY 634 (1158)
Q Consensus 558 ~g~~f~a~l~~~~~~k--~-~~~~i~d~~~Ae~i~~~l~~~~~~V~~v~~k~~~~~PP~Pf~tstLQ~~AskklG~Sa~~ 634 (1158)
.+..|.+.|...++.+ . ++.++.|+++|+++.+.|.+..++|.+|+.++++++||+||+|++||++||++|||||++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~a~~~~~~~~~~~~~V~~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~ 311 (659)
T 1i7d_A 232 ADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQN 311 (659)
T ss_dssp TCCEEEEEECCCGGGTTTBCTTCCBCCHHHHHHHHHHHSSCEEECCEEEEEEEEECCCCSBCHHHHHHHHHHHHCCCHHH
T ss_pred CCcEEEEEEEeccccccccccccccCCHHHHHHHHHHhccCCeEEEEEEeEEEEecCCCCccHHHHHHHHHHhcCCCHHH
Confidence 1346888886543321 1 235789999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCCCCeeEEEEEecCCCcCCCHHHHHHHHHHHHHHh--CCCCCCC------CCCCcccccccccccc
Q 001100 635 TMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERY--GSHHAPE------EGPRKYFKKVKNAQEA 706 (1158)
Q Consensus 635 Tm~iAQ~LYE~~k~~~g~~~GlITYPRTDS~~Ls~~~~~~i~~~i~~~~--g~~~~~~------~~~r~~~~k~k~~qeA 706 (1158)
||++||+|||+ .||||||||||++||++++++++.+|...+ +..+... ..++.+. . ..++|
T Consensus 312 Tm~iAQ~LYE~--------~glITYpRTDS~~ls~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~-~--~kv~a 380 (659)
T 1i7d_A 312 VLDICQKLYET--------HKLITFPRSDCRYLPEEHFAGRHAVMNAISVHAPDLLPQPVVDPDIRNRCWD-D--KKVDA 380 (659)
T ss_dssp HHHHHHHHHHT--------SCCBSCSSCCCCCBCGGGGGGHHHHHHHHHHHSTTTCCCTTCCTTCCCTTBC-G--GGCCS
T ss_pred HHHHHHHHHHh--------CCeEeccCCCCcccCHHHHHHHHHHHHHHhccchhhhhhhhccccccccccC-C--CccCC
Confidence 99999999994 289999999999999999999999887643 3333221 1223222 2 12589
Q ss_pred CCCCCCCcccCChhhhhCCCCHHHHHHHHHHHHHHHHccCCCcEEEEEEEEEEecCccEEEEEEeEEEEEcCceeecccc
Q 001100 707 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDV 786 (1158)
Q Consensus 707 H~AI~PT~~~~~P~~l~~~Ls~dE~kLY~LI~rRfLAs~~~~a~~e~t~v~i~~~~~~~~F~asg~~i~~~Gw~~vy~~~ 786 (1158)
|||||||.... + + . |+++|++||+|||||||||||+||+|++|+|++.++++ .|+++|++++++||++||+..
T Consensus 381 H~AI~PT~~~~-~--~-~-Ls~de~klY~LI~rRflA~~~~~a~~~~t~v~~~~~~~--~F~a~G~~i~~~Gw~~vy~~~ 453 (659)
T 1i7d_A 381 HHAIIPTARSS-A--I-N-LTENEAKVYNLIARQYLMQFCPDAVFRKCVIELDIAKG--KFVAKARFLAEAGWRTLLGSK 453 (659)
T ss_dssp SCCBCBCSCCS-C--C-C-CCHHHHHHHHHHHHHHHHTTSCCEEEEEEEEEECSTTC--CEEECEEEEEECGGGGGSCTT
T ss_pred CCCcCCcCCCC-c--c-C-CCHHHHHHHHHHHHHHHHHhCchheEEEEEEEEEECCE--EEEEEEEEEecCChhheeccc
Confidence 99999998632 1 2 3 99999999999999999999999999999999988654 799999999999999999653
Q ss_pred chhhhccccccchhhhhhHHhcCCCCCCCeeEeeeEEEeccccCCCCCCCHhHHHHHHHh-----------------cCC
Q 001100 787 DAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEE-----------------LGI 849 (1158)
Q Consensus 787 ~~~~~~~~e~~e~~~~~~~~~LP~l~~Gd~v~~~~~~i~e~~TkPP~ryTEasLI~~MEk-----------------~GI 849 (1158)
+. +++++ ...||.|++||.+.+.++.+.+++|+||+|||||+||++||+ .||
T Consensus 454 ~~-----~~~~~------~~~LP~l~~Ge~~~~~~~~~~e~~T~PP~ryTEasLi~~Me~~~k~v~d~e~~~~lk~~~GI 522 (659)
T 1i7d_A 454 ER-----DEEND------GTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGL 522 (659)
T ss_dssp GG-----GTTCE------ECCCCCCCTTCEEEEEEEEEEEEECCCCCCEEHHHHHHHHHTGGGGCCCHHHHHHHHHTTSS
T ss_pred cc-----ccccc------cccCCccCCCCEEEEeEeEEeeeecCCCCCCCHHHHHHHHHHhccccCCHHHHHHHhhccCC
Confidence 11 00000 145999999999999999999999999999999999999994 599
Q ss_pred CCCcchHHHHHHhhccceEEEcCcccccccccchhhhhhhcccccccChhhhHHHHHHhhhhhcCCchHHHHHHHHHHHh
Q 001100 850 GRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF 929 (1158)
Q Consensus 850 GTpATrAsIIe~L~~R~YV~~k~k~L~PT~lG~~v~~~L~~~f~~l~~p~~TA~~E~~Ld~Ia~Gk~~~~~~L~~F~~~f 929 (1158)
|||||||+||++|++|+||+++++.|+||++|+.|+++|+. .|++|+|||+||+.|++|++|+.+|++||++|+..+
T Consensus 523 GtpATrA~iIe~L~~R~Yv~~~~k~l~pT~~G~~l~~~l~~---~l~~p~~Ta~~E~~L~~I~~G~~~~~~~l~~~~~~~ 599 (659)
T 1i7d_A 523 GTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHSLPE---MATRPDMTAHWESVLTQISEKQCRYQDFMQPLVGTL 599 (659)
T ss_dssp SCTTTHHHHHHHHHHTTSEEESSSEEEECHHHHHHHHHSCH---HHHSTHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHhCCcEeecCCEEeECHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999986 389999999999999999999999999999999988
Q ss_pred hhhhhhccchhHHHHHHHHHhhhcCcccCCCCCCCCCCCCCCCCeEEEEecccC
Q 001100 930 SSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFG 983 (1158)
Q Consensus 930 ~~~i~~~~~~~i~~V~e~l~~~~g~~~~~~~~~~~g~CPkCGkG~l~~k~gr~G 983 (1158)
...+..+.. ..+. ....+.||+||+ .|+.+.+.+|
T Consensus 600 ~~~v~~~~~-----------~~~~-------~~~~~~CP~Cg~-~l~~~~~~~g 634 (659)
T 1i7d_A 600 YQLIDQAKR-----------TPVR-------QFRGIVAPGSGG-SADKKKAAPR 634 (659)
T ss_dssp HHHHHHHHT-----------SCSG-------GGTTCCCC---------------
T ss_pred HHHHHHHHh-----------cccc-------cccCCCCCCCCC-eeEEecCcCC
Confidence 765433210 0010 123578999997 4555554444
No 4
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.9e-115 Score=1121.13 Aligned_cols=507 Identities=27% Similarity=0.384 Sum_probs=445.1
Q ss_pred CCCCCeEEEEecchHHHHHHhhcCCC----------E---------EEEeeccccccccccCC--CCCCCC-CCcceEec
Q 001100 346 PPSGKSVVVVESVTKAKVIQGYLGDM----------Y---------EVLPSYGHVRDLAARSG--SVRPDD-DFSMVWEV 403 (1158)
Q Consensus 346 ~~~~k~LIIvEkPskAk~Ia~~LG~~----------y---------~V~~s~GHl~dL~~~~~--~v~p~~-~f~~~~~v 403 (1158)
..|++.|||||||+|||+|+++||.+ | +|+|++|||++|+.+++ +|+.++ +|.|.|..
T Consensus 538 ~~m~~~LvIaEkPs~Ak~ia~~Lg~~~~~~~~~~~~ye~~~~~~~~~v~~~~GHl~~l~~~~~~~~~~~~~~~~~p~y~~ 617 (1104)
T 4ddu_A 538 DTSRSLLIIVESPTKAETLSRFLGRASSRKERNIIVHEAVTGEGVILFTATRGHVYDLVTKGGIHGVEEENGKFVPVYNS 617 (1104)
T ss_dssp CCCBCEEEEESCHHHHHHHHHHHTCCEEEEETTEEEEEEEETTEEEEEEECCSCCEEECSSSTBTTBEEETTEEECEEEE
T ss_pred HhcCCeEEEEECHHHHHHHHHHhCCCccccCCCceeEEEecCCceEEEEEeccccccCCCccccCccccccCCcCccccc
Confidence 46889999999999999999999876 3 79999999999998753 344333 46555431
Q ss_pred C-------------------------cchHHHHHHHHHHhccCCeEEEccCCCccccHHHHHHHHHHhhcccccCCccEE
Q 001100 404 P-------------------------SAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVA 458 (1158)
Q Consensus 404 ~-------------------------~~~~k~lk~Ik~l~k~ad~IIlATDpDREGE~Ia~~Ile~l~~~~~~~~~k~vk 458 (1158)
. ++++++++.|++++++||.||||||||||||+|||||+++|+. ++++|+
T Consensus 618 ~~~~~~~~~~f~~~~~~~p~~~~~~~~~~~~~~~~lk~~~~~~d~i~~atD~DrEGE~I~~~i~~~~~~-----~~~~~~ 692 (1104)
T 4ddu_A 618 LKRCRDCGYQFTEDRDECPVCSSKNIDDKTETLRALREISLEADEILVATDPDVEGEKISWDVTQYLLP-----STRSLR 692 (1104)
T ss_dssp CEEETTTCCEECSCCSSCTTTCCSCEEEHHHHHHHHHHHTTTCSEEEECCCSSHHHHHHHHHHHHHHTT-----TCSCEE
T ss_pred cccccchhhhhccccccccccccccCccHHHHHHHHHHHHhcCCEEEECcCCchhHHHHHHHHHHHhcc-----cCCCeE
Confidence 1 1678999999999999999999999999999999999999853 457899
Q ss_pred EEEEcccCHHHHHHHHHhcccccHhHHHHHHHHHHHhhhhhhcccHHHHhhCC-CcccCCcchhHHHHHHHHHHHHHHhc
Q 001100 459 RVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLP-GCQSAGRVQSAALSLICDREMEIDEF 537 (1158)
Q Consensus 459 Rl~fs~lT~~aI~~A~~nlr~~d~~L~~A~~AR~~lD~LiG~nlSR~l~~k~~-~~lS~GRVQTPtL~LVveRe~EI~~F 537 (1158)
|+|||+||+++|++||+||+++|++|++||+||+++|||||||+||+||++++ +.+|+||||||||+|||+||+||+
T Consensus 693 R~~f~~it~~aI~~a~~~~~~~~~~l~~a~~aR~~~D~lvG~~~sr~l~~~~~~~~lS~GRVQtptL~liv~Re~ei~-- 770 (1104)
T 4ddu_A 693 RIEMHEITRYGFKKARESVRFVDFNLVKAQIVRRVQDRWIGFELSGKLQKRFGRSNLSAGRVQSTVLGWIVEREEEYK-- 770 (1104)
T ss_dssp ECCCSSSSHHHHHHHHHTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCCHHHHHHHHHHHHHHHTTT--
T ss_pred EEEEccCCHHHHHHHHhCCCcCchhHHHHHHHHHHHHHHHHHHHhHHHHHhhCCcccccCccccHHHHHHHHHHHHHh--
Confidence 99999999999999999999999999999999999999999999999999986 479999999999999999999999
Q ss_pred CCcceEEEEEEEecCcCCCCCCceeeeeccccccccccccCcCCHHHHHHHHHHHccCCeEEEEeeeeeeeecCCCCcch
Q 001100 538 KPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYIT 617 (1158)
Q Consensus 538 kp~~Yw~I~a~~~~~~~~~~~g~~f~a~l~~~~~~k~~~~~i~d~~~Ae~i~~~l~~~~~~V~~v~~k~~~~~PP~Pf~t 617 (1158)
+|++||.|.. .. .+..|...|. . + +..++|.+|+.++++++||+||+|
T Consensus 771 ~~~~~~~i~~--~~------~~~~~~~~~~-----~-------~------------~~~~~V~~v~~k~~~~~pp~pf~t 818 (1104)
T 4ddu_A 771 KSEKDFTLLV--LE------NGVNLEVEGK-----I-------A------------DDVVTVVELQEAEEEKNPLPPYTT 818 (1104)
T ss_dssp TCCCCEEEEE--ET------TSCEEEEESC-----C-------C------------CCEEEEEEEEEEEEEECCCCCBCH
T ss_pred ccCcEEEEEE--ec------CcEEEEeecc-----c-------c------------CCcEEEEEEEeeeEEecCCCCCCH
Confidence 6789999832 11 2334432221 0 0 357899999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhccccCCCCCeeEEEEEecCCCcCCCHHHHHHHHHHHHHHhCCCCCCCCCCCccc
Q 001100 618 STLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYF 697 (1158)
Q Consensus 618 stLQ~~AskklG~Sa~~Tm~iAQ~LYE~~k~~~g~~~GlITYPRTDS~~Ls~~~~~~i~~~i~~~~g~~~~~~~~~r~~~ 697 (1158)
++||++||++|||||++||++||+|||+ ||||||||||++||+++++.++++|...+|..|.. +|.|
T Consensus 819 ~~Lq~~a~~~~g~s~~~tm~iaQ~LYe~---------g~iTYpRTds~~l~~~~~~~~~~~i~~~~~~~~~~---~r~~- 885 (1104)
T 4ddu_A 819 SSALSEISQKLRLGVQEVMDILQDLFEK---------GFITYHRTDSTRISLEGQNVARTYLRKIGKEDIFM---GRSW- 885 (1104)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHT---------TSBSCSCCSCCCCCHHHHHHHHHHHHHHSCGGGBC---CCCC-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC---------CceeecCCCccccCHHHHHHHHHHHHHhhCccccC---CCCC-
Confidence 9999999999999999999999999995 89999999999999999999999999888877643 4443
Q ss_pred cccccccccCCCCCCCcccCChhhhh--------CCCCHHHHHHHHHHHHHHHHccCCCcEEEEEEEEEEecCccEEEEE
Q 001100 698 KKVKNAQEAHEAIRPTDIRRLPAMLS--------GLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 769 (1158)
Q Consensus 698 ~k~k~~qeAH~AI~PT~~~~~P~~l~--------~~Ls~dE~kLY~LI~rRfLAs~~~~a~~e~t~v~i~~~~~~~~F~a 769 (1158)
++++||||||||... .|+.+. ..|+++|++||+||||||||+||+||+|++|+|++.++++ .|++
T Consensus 886 ----~~~~aH~aI~Pt~~~-~~~~~~~~~~~~~~~~l~~~e~~lY~lI~~rfla~~~~~a~~~~t~v~~~~~~~--~f~~ 958 (1104)
T 4ddu_A 886 ----STEGAHEAIRPVKPI-DARELEEMIEEGLIADLTKKHLRVYELIFNRFLASQSAAVKVKKQIVTVDVDGK--RMGI 958 (1104)
T ss_dssp ----CSSCSSCCBCBSSSC-CHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHHHHHHBCCEEEEEEEEEEESSSC--EEEE
T ss_pred ----CCCCCCcCcCCCccC-ChHhhhhhhcccccccCCHHHHHHHHHHHHHHHHHhCCceeEEEEEEEEEECCE--EEEE
Confidence 357999999999863 344321 2599999999999999999999999999999999998654 7999
Q ss_pred EeE-EEEEcCceeeccccchhhhccccccchhhhhhHHhcCCCCCCCeeEeeeEEEeccccCCCCCCCHhHHHHHHHhcC
Q 001100 770 SCS-RVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELG 848 (1158)
Q Consensus 770 sg~-~i~~~Gw~~vy~~~~~~~~~~~e~~e~~~~~~~~~LP~l~~Gd~v~~~~~~i~e~~TkPP~ryTEasLI~~MEk~G 848 (1158)
+|+ +++++||++||+. ..||.|++| .+.+.++. .++|+||+|||||+||++||+.|
T Consensus 959 ~g~~~i~~~G~~~v~~~--------------------~~lp~l~~g-~~~~~~~~--~~~~~~p~~~tea~Li~~me~~G 1015 (1104)
T 4ddu_A 959 EQIVEILRDGWNLFVPL--------------------TVSPRFEHR-TYKIKEKK--FYKKHTVPLFTQASIVEEMKKRG 1015 (1104)
T ss_dssp EEEEEEEECSGGGTSCC--------------------CCCCCCCSS-EEEEEEEE--EECCCSSCCBCHHHHHHHHHHHT
T ss_pred EEEEEEEECCHHHhccc--------------------ccCCCCCCC-ceEEEEee--eeecCCCCCCCHHHHHHHHHhcC
Confidence 996 7899999999952 249999999 67766554 47889999999999999999999
Q ss_pred CCCCcchHHHHHHhhccceEEEcC-cccccccccchhhhhhhcccccccChhhhHHHHHHhhhhhcCCchHHHHHHHHHH
Q 001100 849 IGRPSTYASTLKVLQDRNYVTVKS-RILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWS 927 (1158)
Q Consensus 849 IGTpATrAsIIe~L~~R~YV~~k~-k~L~PT~lG~~v~~~L~~~f~~l~~p~~TA~~E~~Ld~Ia~Gk~~~~~~L~~F~~ 927 (1158)
||||||||+||++|++|+||.+++ +.|+||++|+.|+++|.++|+.|++|+|||+||++||+|++|+.+|++||++|++
T Consensus 1016 IGtpaT~a~iI~~l~~r~Yv~~~~~~~l~pT~~G~~l~~~l~~~~~~l~~~~~Ta~~E~~l~~I~~G~~~~~~~l~~~~~ 1095 (1104)
T 4ddu_A 1016 IGRPSTYAKIVEVLFRRGYVYEDKYKRVRPTRFGVMVYSYLKERYEKYVTEETTRRLEEIMDKVERGEEDYQATLRLLYE 1095 (1104)
T ss_dssp CSCTTTHHHHHHHHHHTTSEEECTTCCEEECHHHHHHHHHHHHHCGGGTCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHhCCeEEEcCCCeEeEchHHHHHHHHHHHhchhhcCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999999999999999999988 8999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhh
Q 001100 928 RFSSYCT 934 (1158)
Q Consensus 928 ~f~~~i~ 934 (1158)
.|...++
T Consensus 1096 ~~~~~i~ 1102 (1104)
T 4ddu_A 1096 EIKSLME 1102 (1104)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 8876543
No 5
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.4e-110 Score=1076.11 Aligned_cols=491 Identities=30% Similarity=0.436 Sum_probs=426.7
Q ss_pred CCCCCeEEEEecchHHHHHHhhcCCC-------------------EEEEeeccccccccccC--CCCCCCCCCcceEec-
Q 001100 346 PPSGKSVVVVESVTKAKVIQGYLGDM-------------------YEVLPSYGHVRDLAARS--GSVRPDDDFSMVWEV- 403 (1158)
Q Consensus 346 ~~~~k~LIIvEkPskAk~Ia~~LG~~-------------------y~V~~s~GHl~dL~~~~--~~v~p~~~f~~~~~v- 403 (1158)
..|++.|||||||+|||+|+++||.. |+|+||+|||++|+.++ .+++.+++|.|.|..
T Consensus 502 ~~m~~~LiIaEkPs~ak~ia~~Lg~~~~~~~~~~~~ye~~~~~~~~~vt~~~GHl~~l~~~~~~~~~~~~~~~~P~~~~~ 581 (1054)
T 1gku_B 502 DLIKPALFIVESPTKARQISRFFGKPSVKVLDGAVVYEIPMQKYVLMVTASIGHVVDLITNRGFHGVLVNGRFVPVYASI 581 (1054)
T ss_dssp CCCEEEEEEESCHHHHHHHHGGGEECEEEEETTEEEEEEECSSEEEEEEECCSCSEEECSSSSTTSSCCSSSCCCEEEEC
T ss_pred hccCCEEEEEECHHHHHHHHHHhCCCcccCCCCceeEEeecCCceEEEEEeccccccCCCchhhcCcccccCcCCccccc
Confidence 44678999999999999999999763 38999999999999875 233334456664421
Q ss_pred ------------------------CcchHHHHHHHHHHhccCCeEEEccCCCccccHHHHHHHHHHhhcccccCCccEEE
Q 001100 404 ------------------------PSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVAR 459 (1158)
Q Consensus 404 ------------------------~~~~~k~lk~Ik~l~k~ad~IIlATDpDREGE~Ia~~Ile~l~~~~~~~~~k~vkR 459 (1158)
.++++++++.|++++++||.||||||||||||+|||||+++|+ ++++|+|
T Consensus 582 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~l~~~~d~ii~atD~DrEGE~I~~~i~~~~~------~~~~~~R 655 (1054)
T 1gku_B 582 KRCRDCGYQFTEDRESCPKCGSENVDNSRSRIEALRKLAHDAEFVIVGTDPDTEGEKIAWDLKNLLS------GCGAVKR 655 (1054)
T ss_dssp C------------------------CCHHHHHHHHHHHHHHHSEEEECCCSSHHHHHHHHHHHHHHT------TSSEEEE
T ss_pred ccccchhhhcccccccccccccccCccHHHHHHHHHHHHhcCCEEEECCCCChhhhHHHHHHHHHhC------CCCCeEE
Confidence 2267899999999999999999999999999999999999983 3569999
Q ss_pred EEEcccCHHHHHHHHHhcccccHhHHHHHHHHHHHhhhhhhcccHHHHhhCC-CcccCCcchhHHHHHHHHHHHHHHhcC
Q 001100 460 VVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLP-GCQSAGRVQSAALSLICDREMEIDEFK 538 (1158)
Q Consensus 460 l~fs~lT~~aI~~A~~nlr~~d~~L~~A~~AR~~lD~LiG~nlSR~l~~k~~-~~lS~GRVQTPtL~LVveRe~EI~~Fk 538 (1158)
+|||+||+++|++||+||+++|++|++||+||+++|||||||+||+||++++ +.+|+||||||||+|||+||+|| +
T Consensus 656 ~~~~~it~~aI~~a~~~~~~~~~~l~~a~~aR~~~D~lvG~~~sr~l~~~~~~~~lS~GRVQtptL~~iv~Re~ei---~ 732 (1054)
T 1gku_B 656 AEFHEVTRRAILEALESLRDVDENLVKAQVVRRIEDRWIGFVLSQKLWERFNNRNLSAGRAQTLVLGWIIDRFQES---R 732 (1054)
T ss_dssp CCCSBCSHHHHHHHHTSCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCTTHHHHHHHHHHHHTGG---G
T ss_pred EEEccCCHHHHHHHHhCCCCCcHhHHHHHHhHHHHHHHHHHHhCHHHHHhccCceeeeccccchHHHHHHHHHHhh---C
Confidence 9999999999999999999999999999999999999999999999999876 58999999999999999999999 7
Q ss_pred CcceEEEEEEEecCcCCCCCCceeeeeccccccccccccCcCCHHHHHHHHHHHccCCeEEEEeeeeeeeecCCCCcchH
Q 001100 539 PQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITS 618 (1158)
Q Consensus 539 p~~Yw~I~a~~~~~~~~~~~g~~f~a~l~~~~~~k~~~~~i~d~~~Ae~i~~~l~~~~~~V~~v~~k~~~~~PP~Pf~ts 618 (1158)
|++||.+. . |..|...+ ++ + . + .++|.+|+.++++++||+||+|+
T Consensus 733 ~~~~~~~~---~--------~~~~~~~~-----~~---------~---~----~---~~~V~~v~~k~~~~~pp~pf~~~ 777 (1054)
T 1gku_B 733 ERRKIAIV---R--------DFDLVLEH-----DE---------E---E----F---DLTIKLVEEREELRTPLPPYTTE 777 (1054)
T ss_dssp SEEEEEEE---T--------TTTEEESC-----CC---------S---E----E---EEEEEEEEEEEEEECCCCCBCHH
T ss_pred CcCcEEEE---C--------CEEEEecc-----cc---------c---c----e---EEEEEEEEeeEEEecCCCCCCHH
Confidence 88999874 1 22344221 00 0 1 1 57899999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccCCCCCeeEEEEEecCCCcCCCHHHHHHHHHHHHHHhCCCCCCCCCCCcccc
Q 001100 619 TLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFK 698 (1158)
Q Consensus 619 tLQ~~AskklG~Sa~~Tm~iAQ~LYE~~k~~~g~~~GlITYPRTDS~~Ls~~~~~~i~~~i~~~~g~~~~~~~~~r~~~~ 698 (1158)
+||++||++|||||++||++||+|||. ||||||||||++||+++++.+++++ |..| .+|.+.
T Consensus 778 ~Lq~~a~~~~g~s~~~tm~iaQ~LYe~---------g~iTYpRTds~~l~~~~~~~~~~~~----~~~~----~~r~~~- 839 (1054)
T 1gku_B 778 TMLSDANRILKFSVKQTMQIAQELFEN---------GLITYHRTDSTRVSDVGQRIAKEYL----GDDF----VGREWG- 839 (1054)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHT---------TSBBCSSCCCCCCCHHHHHHHHHHH----TTSB----CCCCSC-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc---------CceeecCCCccccCHHHHHHHHHHh----hhhh----ccccCC-
Confidence 999999999999999999999999995 8999999999999999999888887 4444 244432
Q ss_pred ccccccccCCCCCCCcccCChhhhh----------CCCCHHHHHHHHHHHHHHHHccCCCcEEEEEEEEEEecCccEEEE
Q 001100 699 KVKNAQEAHEAIRPTDIRRLPAMLS----------GLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 768 (1158)
Q Consensus 699 k~k~~qeAH~AI~PT~~~~~P~~l~----------~~Ls~dE~kLY~LI~rRfLAs~~~~a~~e~t~v~i~~~~~~~~F~ 768 (1158)
+++||||||||... .|+.+. ..|+++|++||+|||||||||||+||+|++|+|++.+++ ..|+
T Consensus 840 ----~~~aH~aI~Pt~~~-~~~~~~~~~~~~~~~~~~l~~~e~~lY~lI~~rfla~~~~~a~~~~t~v~~~~~~--~~f~ 912 (1054)
T 1gku_B 840 ----ESGAHECIRPTRPL-TRDDVQRLIQEGVLVVEGLRWEHFALYDLIFRRFMASQCRPFKVVVKKYSIEFDG--KTAE 912 (1054)
T ss_dssp ----SCCSCCCBCBSSSC-CHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHHHHTTBCCEEEEEEEEEEEETT--EEEE
T ss_pred ----CCCCCCCCCCCCCC-ChHHHhhhhhcccccccCCCHHHHHHHHHHHHHHHHHhCcceEEEEEEEEEEeCC--EEEE
Confidence 24899999999863 343321 159999999999999999999999999999999999864 4799
Q ss_pred EE-eEEEEEcCceeeccccchhhhccccccchhhhhhHHhcCCCCCCCeeEeeeEEEeccccCCC-CCCCHhHHHHHHHh
Q 001100 769 SS-CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPP-ARYSEGSLVKKLEE 846 (1158)
Q Consensus 769 as-g~~i~~~Gw~~vy~~~~~~~~~~~e~~e~~~~~~~~~LP~l~~Gd~v~~~~~~i~e~~TkPP-~ryTEasLI~~MEk 846 (1158)
++ |.+++++||+.||++. .+|.|++|+ +.+. .+++|+|| +||||++||++||+
T Consensus 913 ~~~~~~~~~~G~~~v~~~~--------------------~~~~l~~g~-~~~~----~~~~t~pp~~~~tea~Li~~Me~ 967 (1054)
T 1gku_B 913 EERIVRAEGRAYELYRAVW--------------------VKNELPTGT-FRVK----AEVKSVPKVLPFTQSEIIQMMKE 967 (1054)
T ss_dssp ECCEEEEESHHHHHSCCSC--------------------CCCCCCCEE-EEEE----BCCEEEESSCCBCHHHHHHHHHH
T ss_pred EEeeEEEEeCCceEEeccc--------------------cCCCCCCCc-eEEe----eeeeeCCCCCCCCHHHHHHhhhc
Confidence 99 4789999999999532 257788995 5432 78999998 79999999999999
Q ss_pred cCCCCCcchHHHHHHhhccceEEEcCcccccccccchhhhhhhcccccccChhhhHHHHHHhhhhhcCCchHHHHHHHHH
Q 001100 847 LGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYW 926 (1158)
Q Consensus 847 ~GIGTpATrAsIIe~L~~R~YV~~k~k~L~PT~lG~~v~~~L~~~f~~l~~p~~TA~~E~~Ld~Ia~Gk~~~~~~L~~F~ 926 (1158)
.|||||||||+||++|++|+||..++++|+||++|+.|+++|+..|+.|++|+|||+||++|++|++|+.+|++||++|+
T Consensus 968 ~GIGtpaT~a~iI~~l~~r~Yv~~~~~~l~pT~~G~~l~~~l~~~~~~l~~~~~Ta~~E~~l~~I~~G~~~~~~~l~~~~ 1047 (1054)
T 1gku_B 968 RGIGRPSTYATIVDRLFMRNYVVEKYGRMIPTKLGIDVFRFLVRRYAKFVSEDRTRDLESRMDAIERGELDYLKALEDMY 1047 (1054)
T ss_dssp HTCCCTTTHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHHHHSCCGGGSHHHHHHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHhCCchhhcCCEEeEchHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999877779999999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 001100 927 SRFS 930 (1158)
Q Consensus 927 ~~f~ 930 (1158)
+.|.
T Consensus 1048 ~~~~ 1051 (1054)
T 1gku_B 1048 AEIK 1051 (1054)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 6
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=96.05 E-value=0.02 Score=55.68 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=74.6
Q ss_pred CCCeEEEEecchHHHHHHhhcCCCEEEEeeccccccccccCCCCCCCCCCcceEecCcchHHHHHHHHHHhccCCeEEEc
Q 001100 348 SGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILA 427 (1158)
Q Consensus 348 ~~k~LIIvEkPskAk~Ia~~LG~~y~V~~s~GHl~dL~~~~~~v~p~~~f~~~~~v~~~~~k~lk~Ik~l~k~ad~IIlA 427 (1158)
+-+.+||||--+-...+.++++.+..+..+.|. ++ .+.+..|+.+.+ -..||+.
T Consensus 3 ~i~~vIVVEGk~D~~~L~~~~~~~~~iI~t~Gs---i~----------------------~~~l~~I~~~~~-~r~VIi~ 56 (119)
T 2fcj_A 3 RVEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGT---IS----------------------DARLEELADELE-GYDVYLL 56 (119)
T ss_dssp CCCEEEEESSHHHHHHHHHHBSSCCEEEECCSC---CC----------------------HHHHHHHHHHTT-TSEEEEE
T ss_pred ccCeEEEEechHHHHHHHHhcCCCCCEEEeCCc---cC----------------------HHHHHHHHHHhc-CCCEEEE
Confidence 347899999999999999987555557777663 21 245667777775 4689999
Q ss_pred cCCCccccHHHHHHHHHHhhcccccC-CccEEEEEEcccCHHHHHHHHHhccc
Q 001100 428 SDPDREGEAIAWHIVEMLQQQDALHE-NITVARVVFHEITEASIKVALQAARE 479 (1158)
Q Consensus 428 TDpDREGE~Ia~~Ile~l~~~~~~~~-~k~vkRl~fs~lT~~aI~~A~~nlr~ 479 (1158)
||||+-||.|...|.+++......-. +.+ +=+..+++++|++||.+..-
T Consensus 57 TD~D~~GekIRk~i~~~lp~~~hafi~r~~---~gVE~a~~~~I~~aL~~~~~ 106 (119)
T 2fcj_A 57 ADADEAGEKLRRQFRRMFPEAEHLYIDRAY---REVAAAPIWHLAQVLLRARF 106 (119)
T ss_dssp CCSSHHHHHHHHHHHHHCTTSEEECCCTTT---CSTTTSCHHHHHHHHHHTTC
T ss_pred ECCCccHHHHHHHHHHHCCCCcEEeccCCc---cCcccCCHHHHHHHHHhccc
Confidence 99999999999999998854211000 011 14557899999999998764
No 7
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=95.65 E-value=0.0086 Score=63.89 Aligned_cols=107 Identities=21% Similarity=0.392 Sum_probs=72.7
Q ss_pred CeEEEEecchHHHHHHhh--cCCCEEEEeeccccccccccCCCCCCCCCCcceEecCcchHHHHHHHHHHhccCCeEEEc
Q 001100 350 KSVVVVESVTKAKVIQGY--LGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILA 427 (1158)
Q Consensus 350 k~LIIvEkPskAk~Ia~~--LG~~y~V~~s~GHl~dL~~~~~~v~p~~~f~~~~~v~~~~~k~lk~Ik~l~k~ad~IIlA 427 (1158)
..|.|||.|.-.-+|++. +.+-|.|.- |||=-| .++.|+ ++... +.++.| ...++||||
T Consensus 80 ~~iCVVE~~~Dv~aiE~t~~y~G~YhVLg--G~lSPl----dGigP~-dL~i~--------~L~~Rl----~~V~EVIlA 140 (228)
T 1vdd_A 80 RTICVVEEPGDVIALERSGEYRGLYHVLH--GVLSPM----NGVGPD-KLHIK--------PLLPRV----GQGMEVILA 140 (228)
T ss_dssp TEEEEESSHHHHHHTTTTSSCCSEEEECS--SCCBGG----GTBCTT-TSTTG--------GGGGGC----CTTCEEEEC
T ss_pred CeEEEECCHHHHHHHHHhcccceEEEecC--CccCcc----cCCChh-hcCHH--------HHHHHh----CCCCEEEEe
Confidence 579999999998888753 355677763 554433 245564 33321 111222 568999999
Q ss_pred cCCCccccHHHHHHHHHHhhcccccCCccEEEEEE--------cccCHHHHHHHHHhcccc
Q 001100 428 SDPDREGEAIAWHIVEMLQQQDALHENITVARVVF--------HEITEASIKVALQAAREI 480 (1158)
Q Consensus 428 TDpDREGE~Ia~~Ile~l~~~~~~~~~k~vkRl~f--------s~lT~~aI~~A~~nlr~~ 480 (1158)
|+|+-|||+.+++|.+.|+. ...+|.|+-. -=+++-.+.+||.+-+++
T Consensus 141 tnpTvEGEaTA~YI~~~Lk~-----~~vkVTRiA~GiPvGgeLEY~De~TL~~Al~~R~~~ 196 (228)
T 1vdd_A 141 TGTTVEGDATALYLQRLLEP-----LGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTV 196 (228)
T ss_dssp CCSSHHHHHHHHHHHHHHTT-----SSCEEEECCBCBCTTCCGGGSCHHHHHHHHHTCEEE
T ss_pred CCCCchHHHHHHHHHHHHHH-----cCCCEEEecccCCCCcceeeccHHHHHHHHHcCccc
Confidence 99999999999999999864 2457888743 234566677777766554
No 8
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=94.31 E-value=0.011 Score=72.63 Aligned_cols=54 Identities=20% Similarity=0.365 Sum_probs=46.7
Q ss_pred CeeEeeeEEEeccccCCCCCCCHhHHHHHHH-hcCCCCCcchHHHHHHhhcc--------ceEE
Q 001100 815 DPLYLGEVELKQHHTQPPARYSEGSLVKKLE-ELGIGRPSTYASTLKVLQDR--------NYVT 869 (1158)
Q Consensus 815 d~v~~~~~~i~e~~TkPP~ryTEasLI~~ME-k~GIGTpATrAsIIe~L~~R--------~YV~ 869 (1158)
..+.|.++.-+++...||++|+-.+|.+.+- +.|++..-|.. |.+.|++. |||.
T Consensus 225 ~~~~V~~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~tm~-iaQ~LYE~~~~~~~~~glIT 287 (633)
T 2gai_A 225 DELVVEEKKVSVKKFAPPEPFKTSTLQQEAYSKLGFSVSKTMM-IAQQLYEGVETKDGHIAFIT 287 (633)
T ss_dssp CCEEEEEEEEEEEEECCCCCBCHHHHHHHHHHHHCCCHHHHHH-HHHHHHHCEECSSSEECCBC
T ss_pred CCeEEEEEEEEEEEecCCCCccHHHHHHHHHHHcCCCHHHHHH-HHHHHhhccccccCccceEE
Confidence 4578889999999999999999999999874 57998877775 89999998 8885
No 9
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=91.75 E-value=0.33 Score=51.43 Aligned_cols=107 Identities=25% Similarity=0.417 Sum_probs=67.6
Q ss_pred CeEEEEecchHHHHHHhh--cCCCEEEEeeccccccccccCCCCCCCCCCcceEecCcchHHHHHHHHHHhccCCeEEEc
Q 001100 350 KSVVVVESVTKAKVIQGY--LGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILA 427 (1158)
Q Consensus 350 k~LIIvEkPskAk~Ia~~--LG~~y~V~~s~GHl~dL~~~~~~v~p~~~f~~~~~v~~~~~k~lk~Ik~l~k~ad~IIlA 427 (1158)
..|.|||.|.-.-+|++. +.+-|.|.- |+|=-| .++.|+ ++. -.+.++.|++ .+..+||+|
T Consensus 94 ~~iCVVE~~~Dv~aiE~t~~y~G~YhVLg--G~iSPl----dGigP~-~L~--------i~~L~~Ri~~--~~v~EVIlA 156 (212)
T 3vdp_A 94 STICVVSHPMDVVAMEKVKEYKGVYHVLH--GVISPI----EGVGPE-DIR--------IKELLERVRD--GSVKEVILA 156 (212)
T ss_dssp EEEEEESSHHHHHHHHTTSCCCEEEEECS--SCCBTT----TTBCGG-GTT--------HHHHHHHHHH--SCCSEEEEC
T ss_pred CEEEEECCHHHHHHHHhhCccceEEEecC--CccCcc----CCCCcc-ccC--------HHHHHHHHhc--CCCcEEEEE
Confidence 469999999999999864 344565542 333222 234443 222 1223333332 357899999
Q ss_pred cCCCccccHHHHHHHHHHhhcccccCCccEEEEEE--------cccCHHHHHHHHHhcc
Q 001100 428 SDPDREGEAIAWHIVEMLQQQDALHENITVARVVF--------HEITEASIKVALQAAR 478 (1158)
Q Consensus 428 TDpDREGE~Ia~~Ile~l~~~~~~~~~k~vkRl~f--------s~lT~~aI~~A~~nlr 478 (1158)
|+|.-|||+-+..|.+.|+. ...+|.|+=. -=+++-.+.+||++-+
T Consensus 157 tnpTvEGeaTa~Yi~~~Lk~-----~~vkvTRiA~GiPvGgeLEY~D~~TL~~Al~~R~ 210 (212)
T 3vdp_A 157 TNPDIEGEATAMYIAKLLKP-----FGVKVTRIAHGIPVGGDLEYTDVVTLSKALEGRR 210 (212)
T ss_dssp CCSSHHHHHHHHHHHHHHTT-----TTCEEEECCBSBCTTCCGGGSCHHHHHHHHHTCE
T ss_pred CCCCccHHHHHHHHHHHhhh-----cCCCeeeccccCcCCcchhhccHHHHHHHHHhCc
Confidence 99999999999999999875 2457778642 2234555666665543
No 10
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=82.65 E-value=0.93 Score=44.03 Aligned_cols=68 Identities=24% Similarity=0.317 Sum_probs=47.0
Q ss_pred CeEEEEecchHHHHHHhhcCCCEEEEeeccccccccccCCCCCCCCCCcceEecCcchHHHHHHHHHHhccCCeEEEccC
Q 001100 350 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASD 429 (1158)
Q Consensus 350 k~LIIvEkPskAk~Ia~~LG~~y~V~~s~GHl~dL~~~~~~v~p~~~f~~~~~v~~~~~k~lk~Ik~l~k~ad~IIlATD 429 (1158)
+.+||||=..-...+.++ |.+ .++++.|.- + .+.++.+.+..+.||+.||
T Consensus 21 ~~vIvVEGk~D~~~L~~~-g~~-~iI~t~Gta---------------------l-------~~~i~~l~~~~~~VIIltD 70 (118)
T 1t6t_1 21 EAVILVEGKNDKKALSKF-SIK-NVIDLSGKR---------------------Y-------ADVVDMLEGKWEKVILLFD 70 (118)
T ss_dssp TSEEEESSHHHHHHHHTT-TCC-CEEECTTSC---------------------H-------HHHHHHHTTTCSEEEECCC
T ss_pred CcEEEEEChHHHHHHHHh-CcC-cEEEECCCc---------------------H-------HHHHHHHHhCCCEEEEEEC
Confidence 458899966666666664 333 455555530 0 1134445556677999999
Q ss_pred CCccccHHHHHHHHHHhh
Q 001100 430 PDREGEAIAWHIVEMLQQ 447 (1158)
Q Consensus 430 pDREGE~Ia~~Ile~l~~ 447 (1158)
+|+.||.|...+.+++..
T Consensus 71 ~D~aGe~ir~~i~~~l~~ 88 (118)
T 1t6t_1 71 LDTHGERINQKMKELLSS 88 (118)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHhcCc
Confidence 999999999999999865
No 11
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=81.20 E-value=0.67 Score=42.34 Aligned_cols=54 Identities=22% Similarity=0.364 Sum_probs=43.0
Q ss_pred CCHhHHHHHH-HhcCCCCCcchHHHHHHhhccceEEEc----Ccccccccccchhhhhhh
Q 001100 835 YSEGSLVKKL-EELGIGRPSTYASTLKVLQDRNYVTVK----SRILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~M-Ek~GIGTpATrAsIIe~L~~R~YV~~k----~k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|.+.| +..|| +++|-..+|+.|.++|||++. .+.+.+|+.|+.+.+.+.
T Consensus 23 ~~~~el~~~la~~l~i-s~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~~ 81 (99)
T 1tbx_A 23 IATYDLYKKVNAEFPM-STATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISLK 81 (99)
T ss_dssp CBHHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHHHH
Confidence 5677777776 55677 678899999999999999873 457899999998776554
No 12
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=79.41 E-value=2.8 Score=41.39 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=39.1
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-------Ccccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-------~k~L~PT~lG~~v~~~L~ 889 (1158)
.+..+|-+.| || +++|-..+|+.|.++|||++. ...+.+|+.|+.+.+.+.
T Consensus 47 ~~~~eLa~~l---~~-~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~~ 104 (151)
T 4aik_A 47 QSQIQLAKAI---GI-EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQVD 104 (151)
T ss_dssp SCHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHHH
T ss_pred CcHHHHHHHH---Cc-CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHHH
Confidence 4555666555 66 678899999999999999873 235999999998776554
No 13
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=70.88 E-value=3.5 Score=39.68 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=38.4
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| |+ +++|-..+|..|.++|||++.. ..+.+|+.|+.+.+.+.
T Consensus 46 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 103 (145)
T 3g3z_A 46 RTQKHIGEKW---SL-PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLT 103 (145)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHH
Confidence 5566666555 55 5678899999999999999731 25889999998765543
No 14
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=69.65 E-value=2.6 Score=40.67 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=38.7
Q ss_pred CCCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-------Ccccccccccchhhhhhh
Q 001100 834 RYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 834 ryTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-------~k~L~PT~lG~~v~~~L~ 889 (1158)
..|..+|-+.| || +++|-..+|+.|.++|||.+. ...+.+|+.|+.+.+.+.
T Consensus 54 ~~t~~ela~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~ 112 (148)
T 3nrv_A 54 DCSVQKISDIL---GL-DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
T ss_dssp SBCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHH
Confidence 34555565554 66 578889999999999999875 456999999998776654
No 15
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=68.96 E-value=2.9 Score=40.50 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=36.3
Q ss_pred CCCCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-------Ccccccccccchhhhhhh
Q 001100 833 ARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 833 ~ryTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-------~k~L~PT~lG~~v~~~L~ 889 (1158)
...|..+|-+.| |+ +++|-..+|+.|.++|||.+. ...+.+|+.|+.+.+.+.
T Consensus 56 ~~~t~~eLa~~l---~~-~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 115 (148)
T 3jw4_A 56 SGIIQKDLAQFF---GR-RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFN 115 (148)
T ss_dssp TCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH---CC-ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHH
Confidence 346666766554 56 578889999999999999764 236889999998776554
No 16
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=68.25 E-value=3.1 Score=39.96 Aligned_cols=50 Identities=18% Similarity=0.109 Sum_probs=38.4
Q ss_pred CHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 836 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 836 TEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
|..+|-+.| |+ +++|-..+|+.|.++|||.+.. ..+.+|+.|+.+...+.
T Consensus 52 ~~~~la~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 108 (144)
T 3f3x_A 52 SMVYLANRY---FV-TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEAN 108 (144)
T ss_dssp EHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHHHH
Confidence 566666655 55 5678889999999999998742 25999999998776554
No 17
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=66.43 E-value=3.5 Score=39.26 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=40.3
Q ss_pred CCCCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-------Ccccccccccchhhhhhh
Q 001100 833 ARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 833 ~ryTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-------~k~L~PT~lG~~v~~~L~ 889 (1158)
...|..+|-+.| |+ +++|-..+|+.|.++|||++. ...+.+|+.|+.+.+.+.
T Consensus 46 ~~~t~~ela~~l---~~-~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 105 (139)
T 3eco_A 46 DGLTQNDIAKAL---QR-TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFT 105 (139)
T ss_dssp TCEEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHH
T ss_pred CCcCHHHHHHHh---CC-CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHH
Confidence 345566666655 55 578899999999999999874 236889999998776554
No 18
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=66.15 E-value=3.6 Score=40.55 Aligned_cols=50 Identities=22% Similarity=0.169 Sum_probs=37.0
Q ss_pred CHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 836 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 836 TEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
|..+|-+.| || +++|-..+|+.|.++|||++.. ..+.+|+.|+.+.+.+.
T Consensus 69 t~~eLa~~l---~~-~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 125 (161)
T 3e6m_A 69 TVGQLATLG---VM-EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEIS 125 (161)
T ss_dssp EHHHHHHHT---TC-CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHH
Confidence 334555443 55 5678899999999999998742 35899999998776554
No 19
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=65.98 E-value=6.3 Score=39.65 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=40.7
Q ss_pred CCCCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 833 ARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 833 ~ryTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
...|..+|-+.| || +++|-..+|..|.++|||++.. ..+.+|+.|+.+...+.
T Consensus 85 ~~~t~~eLa~~l---~i-s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 144 (181)
T 2fbk_A 85 EGLRPTELSALA---AI-SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLL 144 (181)
T ss_dssp SCBCHHHHHHHC---SC-CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH---CC-CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 345667776654 66 7888999999999999998741 25889999998776543
No 20
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=65.60 E-value=5.1 Score=39.94 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=38.9
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| || +++|-..+|+.|.++|||++.. ..+.+|+.|+.+.+.+.
T Consensus 69 ~t~~eLa~~l---~i-~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 126 (166)
T 3deu_A 69 QSQIQLAKAI---GI-EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEME 126 (166)
T ss_dssp EEHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 3445666555 56 6788999999999999998742 35889999998776554
No 21
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=62.96 E-value=7.5 Score=36.69 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=38.6
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| |+ +++|-..+|+.|.++|||.+.. ..+.+|+.|+.+...+.
T Consensus 44 ~~~~ela~~l---~~-s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~ 101 (138)
T 3bpv_A 44 IKQDELATFF---HV-DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLIL 101 (138)
T ss_dssp CBHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHHH
Confidence 4666666665 66 5778889999999999998731 24889999998766543
No 22
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=62.75 E-value=2.8 Score=38.83 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=36.4
Q ss_pred HHhcCCCCCcchHHHHHHhhccceEEEcCcccccccccchhhhhhhc
Q 001100 844 LEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 890 (1158)
Q Consensus 844 MEk~GIGTpATrAsIIe~L~~R~YV~~k~k~L~PT~lG~~v~~~L~~ 890 (1158)
++..|+. +++-..+++.|.+.|||++....+..|++|..+.+.+..
T Consensus 27 a~~~~ls-~~~~~~~l~~L~~~GLI~~~~~~~~LT~kG~~~l~~l~~ 72 (95)
T 1r7j_A 27 MYGANLS-YALTGRYIKMLMDLEIIRQEGKQYMLTKKGEELLEDIRK 72 (95)
T ss_dssp HHHHTCC-HHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHHHH
T ss_pred HHHhCcC-HHHHHHHHHHHHHCCCeEEECCeeEEChhHHHHHHHHHH
Confidence 3444553 456667899999999999988889999999988777664
No 23
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=61.67 E-value=6.4 Score=38.08 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=38.3
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc---------Ccccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK---------SRILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k---------~k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| |+ +++|-..+|+.|.++|||.+. ...+.+|+.|+.+...+.
T Consensus 52 ~t~~eLa~~l---~~-~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~ 111 (151)
T 3kp7_A 52 LTVGQITEKQ---GV-NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERK 111 (151)
T ss_dssp BCHHHHHHHH---CS-CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHH
Confidence 5566666555 66 578889999999999999862 125899999998776554
No 24
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=61.38 E-value=5.7 Score=38.93 Aligned_cols=51 Identities=24% Similarity=0.286 Sum_probs=38.6
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-------Ccccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-------~k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| |+ +++|-..+|+.|.++|||++. ...+.+|+.|+.+.+.+.
T Consensus 65 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 122 (159)
T 3s2w_A 65 INQESLSDYL---KI-DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMK 122 (159)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHHH
Confidence 3455565555 56 578999999999999999874 236889999998776554
No 25
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=59.21 E-value=5.2 Score=38.30 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=37.5
Q ss_pred CHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 836 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 836 TEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
|..+|-+.| |+ +++|-..+|+.|.++|||++.. ..+.+|+.|+.+.+.+.
T Consensus 53 t~~eLa~~l---~~-~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 109 (143)
T 3oop_A 53 SQKEIALWT---KK-DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELR 109 (143)
T ss_dssp EHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHH
Confidence 445555554 56 5788899999999999998742 35889999998776543
No 26
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=59.15 E-value=7.1 Score=38.04 Aligned_cols=51 Identities=16% Similarity=-0.001 Sum_probs=38.3
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|.+.| || +++|-..+|+.|.++|||.+.. ..+.+|+.|+.+.+.+.
T Consensus 63 ~~~~ela~~l---~i-~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 120 (160)
T 3boq_A 63 LSMGKLSGAL---KV-TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQAS 120 (160)
T ss_dssp EEHHHHHHHC---SS-CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHHH
Confidence 4455665554 66 6889999999999999998742 24889999998766543
No 27
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=58.98 E-value=6.9 Score=38.47 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=39.9
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| || +++|-..+|..|.++|||++.. ..+.+|+.|+.+.+.+.
T Consensus 61 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 118 (162)
T 3k0l_A 61 LSNAKLAERS---FI-KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCN 118 (162)
T ss_dssp CCHHHHHHHH---TS-CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHH
Confidence 5666776665 56 6788999999999999998741 35899999998776554
No 28
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=58.13 E-value=7.3 Score=39.73 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=39.9
Q ss_pred CCCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-----C--cccccccccchhhhhhh
Q 001100 834 RYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-----S--RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 834 ryTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-----~--k~L~PT~lG~~v~~~L~ 889 (1158)
..|..+|-+.| || +++|-..+|..|.++|||++. + ..+.+|+.|+.+++.+.
T Consensus 57 ~~t~~eLa~~l---~i-s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 115 (189)
T 3nqo_A 57 ETTLNNIARKM---GT-SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCS 115 (189)
T ss_dssp GCCHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH
T ss_pred CcCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH
Confidence 45566666555 66 568889999999999999873 1 36899999998776554
No 29
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=57.96 E-value=10 Score=36.71 Aligned_cols=51 Identities=18% Similarity=0.081 Sum_probs=38.5
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| || +++|-..+|..|.++|||.+.. ..+.+|+.|+.+.+.+.
T Consensus 58 ~t~~ela~~l---~i-~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 115 (155)
T 3cdh_A 58 MMITRLAKLS---LM-EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLV 115 (155)
T ss_dssp BCHHHHHHHT---TC-CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHHH
Confidence 4556666554 66 5778888999999999998742 35889999998776554
No 30
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=57.95 E-value=11 Score=36.02 Aligned_cols=51 Identities=16% Similarity=0.083 Sum_probs=38.7
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.|...|-+.| || +++|-..+|..|.++|||.+.. ..+.+|+.|+.+...+.
T Consensus 51 ~~~~~la~~l---~i-~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 108 (147)
T 2hr3_A 51 VTPSELAAAE---RM-RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNR 108 (147)
T ss_dssp BCHHHHHHHT---TC-CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHh---CC-ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHH
Confidence 4566666554 67 6778889999999999998742 24889999998776553
No 31
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=57.50 E-value=18 Score=41.24 Aligned_cols=37 Identities=30% Similarity=0.323 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHhc--cCCeEEEccCCCccccHHHHHHHHHHh
Q 001100 406 AAWTHLKSIKVALS--GAENLILASDPDREGEAIAWHIVEMLQ 446 (1158)
Q Consensus 406 ~~~k~lk~Ik~l~k--~ad~IIlATDpDREGE~Ia~~Ile~l~ 446 (1158)
....+++.|+.+++ +++.|+||||.++| -.++.+.+.
T Consensus 263 Sle~I~rqIk~~vk~~~lksVFIATDa~~~----~~ELk~~L~ 301 (362)
T 3zy2_A 263 SKQQILEQIVEKVGSIGAKSVFVASDKDHM----IDEINEALK 301 (362)
T ss_dssp CHHHHHHHHHHHHHHHTCSEEEEEESSCCC----HHHHHHHHG
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCHHH----HHHHHHHhh
Confidence 45667777777776 57899999999984 256666664
No 32
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=56.27 E-value=7.2 Score=37.19 Aligned_cols=51 Identities=14% Similarity=0.332 Sum_probs=37.8
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| || +++|-..+|+.|.++|||.+.. ..+.+|+.|+.+.+.+.
T Consensus 44 ~t~~~la~~l---~~-s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 101 (144)
T 1lj9_A 44 IIQEKIAELI---KV-DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIV 101 (144)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHHH
Confidence 4455555554 55 5788889999999999998742 24889999998776544
No 33
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=55.92 E-value=7.1 Score=38.00 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=38.0
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-------Ccccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-------~k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|.+.| || +++|-..+|+.|.++|||.+. ...+.+|+.|+.+...+.
T Consensus 59 ~t~~ela~~l---~i-s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 116 (154)
T 2eth_A 59 KKMKEIAEFL---ST-TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEIL 116 (154)
T ss_dssp BCHHHHHHHT---TS-CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHHH
Confidence 4555565544 66 678889999999999999874 124889999998776543
No 34
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=55.79 E-value=11 Score=35.72 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=39.9
Q ss_pred CCCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 834 RYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 834 ryTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
..|..+|-+.| |+ +++|-..+|+.|.++|||.+.. ..+.+|+.|+.+...+.
T Consensus 50 ~~~~~ela~~l---~~-~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~~ 108 (141)
T 3bro_A 50 EVLQRDLESEF---SI-KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIIL 108 (141)
T ss_dssp CCBHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHH
T ss_pred CcCHHHHHHHH---CC-CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHHHH
Confidence 45677776665 66 5788899999999999998742 25889999998766544
No 35
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=55.74 E-value=16 Score=38.62 Aligned_cols=63 Identities=21% Similarity=0.192 Sum_probs=47.0
Q ss_pred cCCCCCcchHHHHHHhhccceEEEcC-cccccccccchhhhhhhcccccccChhhhHHHHHHhhhhhcCCchHHHH
Q 001100 847 LGIGRPSTYASTLKVLQDRNYVTVKS-RILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGL 921 (1158)
Q Consensus 847 ~GIGTpATrAsIIe~L~~R~YV~~k~-k~L~PT~lG~~v~~~L~~~f~~l~~p~~TA~~E~~Ld~Ia~Gk~~~~~~ 921 (1158)
.|+ +++|-..+|+.|.++|||.+.. +.+.+|+.|+.+...+.. .-..||..|..+. | .+++++
T Consensus 34 l~v-s~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~~~---------~~~~~e~~l~~~l-g-l~~ee~ 97 (226)
T 2qq9_A 34 LEQ-SGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMR---------KHRLAERLLTDII-G-LDINKV 97 (226)
T ss_dssp HTC-CHHHHHHHHHHHHHTTSEEECTTSBEEECHHHHHHHHHHHH---------HHHHHHHHHHHTT-C-CCHHHH
T ss_pred HCC-CHHHHHHHHHHHHHCCCEEEeCCCCeEECHHHHHHHHHHHH---------HHHHHHHHHHHHc-C-CCHHHH
Confidence 467 6888999999999999999864 569999999987765542 1357888876543 3 666554
No 36
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=54.94 E-value=8.8 Score=36.53 Aligned_cols=51 Identities=25% Similarity=0.265 Sum_probs=38.6
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|.+.| |+ +++|-..+|..|.++|||.+.. ..+.+|+.|+.+...+.
T Consensus 48 ~~~~~la~~l---~~-s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 105 (145)
T 2a61_A 48 KRPGELSVLL---GV-AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVI 105 (145)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHHH
Confidence 4566666655 56 6778899999999999998741 25889999998776543
No 37
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=54.90 E-value=9.8 Score=35.84 Aligned_cols=50 Identities=18% Similarity=0.399 Sum_probs=36.2
Q ss_pred CHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-----C--cccccccccchhhhhhh
Q 001100 836 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-----S--RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 836 TEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-----~--k~L~PT~lG~~v~~~L~ 889 (1158)
|..+|-+. .|| +++|-..+|+.|.++|||.+. + ..+.+|+.|+.+...+.
T Consensus 49 ~~~ela~~---l~~-~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 105 (139)
T 3bja_A 49 SMSKLIEN---MGC-VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVD 105 (139)
T ss_dssp EHHHHHHH---CSS-CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHH---HCC-ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHHH
Confidence 34444443 366 578889999999999999873 1 24889999998765543
No 38
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=54.06 E-value=5 Score=38.44 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=36.6
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| || +++|-..+|+.|.++|||++.. ..+.+|+.|+.+.+.+.
T Consensus 52 ~t~~eLa~~l---~~-~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 109 (142)
T 3ech_A 52 LNLQDLGRQM---CR-DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAE 109 (142)
T ss_dssp CCHHHHHHHH---C----CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHH
T ss_pred cCHHHHHHHh---CC-CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHH
Confidence 5666776665 66 6788999999999999998732 24889999998776554
No 39
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=53.90 E-value=7.3 Score=38.01 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=38.1
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| || +++|-..+|+.|.++|||.+.. ..+.+|+.|+.+...+.
T Consensus 64 ~t~~ela~~l---~i-s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 121 (162)
T 2fa5_A 64 SSASEVSDRT---AM-DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVA 121 (162)
T ss_dssp CCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHH
Confidence 4556666655 55 6688899999999999998743 45889999998776543
No 40
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=53.51 E-value=11 Score=35.81 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=38.8
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|.+.| || +++|-..+|+.|.++|||.+.. ..+.+|+.|+.+.+.+.
T Consensus 53 ~t~~~la~~l---~~-s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 110 (146)
T 2fbh_A 53 PTQRELAQSV---GV-EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIE 110 (146)
T ss_dssp CBHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHH
T ss_pred CCHHHHHHHh---CC-ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHHH
Confidence 5666676655 66 5678888999999999998742 24889999998766543
No 41
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=50.60 E-value=10 Score=36.68 Aligned_cols=51 Identities=25% Similarity=0.166 Sum_probs=39.4
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEE--c----Cc---ccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTV--K----SR---ILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~--k----~k---~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| |+ +++|-..+|..|.++|||.+ . ++ .+.+|+.|+.+.+.+.
T Consensus 56 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~ 115 (154)
T 2qww_A 56 ISVADLTKRL---II-TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRST 115 (154)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHH
Confidence 4556666655 56 68899999999999999998 2 22 5889999998776654
No 42
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=49.33 E-value=6.1 Score=38.22 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=38.0
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| || +++|-..+|+.|.++|||++.. ..+.+|+.|+.+.+.+.
T Consensus 55 ~t~~eLa~~l---~i-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 112 (150)
T 3fm5_A 55 VNQRGVAATM---GL-DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAK 112 (150)
T ss_dssp CCSHHHHHHH---TC-CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHH
Confidence 5667777666 55 5788999999999999998732 24899999998776553
No 43
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=48.99 E-value=24 Score=34.12 Aligned_cols=31 Identities=23% Similarity=0.622 Sum_probs=19.4
Q ss_pred CCCCCCCCCeEEEEecccCceeEEecCCCCCCccc
Q 001100 965 RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYI 999 (1158)
Q Consensus 965 g~CPkCGkG~l~~k~gr~G~~~f~GCs~yP~C~~~ 999 (1158)
.-||.||. +|..+..+-.....+.|.. |.+.
T Consensus 5 ~FCp~Cgn-lL~~~~~~~~~~~~~~C~~---C~y~ 35 (122)
T 1twf_I 5 RFCRDCNN-MLYPREDKENNRLLFECRT---CSYV 35 (122)
T ss_dssp CBCSSSCC-BCEEEEETTTTEEEEECSS---SSCE
T ss_pred CcccccCc-cCcccccCcCCCCEEECCc---CCCe
Confidence 46999996 7776654333334677853 5543
No 44
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=48.94 E-value=7 Score=37.86 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=38.1
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-------Ccccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-------~k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| |+ +++|-..+|+.|.++|||++. ...+.+|+.|+.+.+.+.
T Consensus 56 ~~~~eLa~~l---~~-~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 113 (149)
T 4hbl_A 56 QTLNSIGRHL---DL-SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVF 113 (149)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHHH
Confidence 3556666665 55 578899999999999999864 135899999998776544
No 45
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=48.46 E-value=16 Score=34.82 Aligned_cols=27 Identities=15% Similarity=0.386 Sum_probs=15.7
Q ss_pred CCCCCCCCCeEEEEecccCceeEEecCC
Q 001100 965 RSCPVCGEGTLIFKVSRFGAGYFIGCNQ 992 (1158)
Q Consensus 965 g~CPkCGkG~l~~k~gr~G~~~f~GCs~ 992 (1158)
.-||.||. +|..+.+.-.....+.|..
T Consensus 5 ~FCp~Cgn-~L~~~~~~~~~~~~~~C~~ 31 (113)
T 3h0g_I 5 QYCIECNN-MLYPREDKVDRVLRLACRN 31 (113)
T ss_dssp CCCSSSCC-CCEECCCTTTCCCCEECSS
T ss_pred eeCcCCCC-EeeEcccCCCCeeEEECCC
Confidence 46999996 6776654321122455753
No 46
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=47.74 E-value=11 Score=35.92 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=39.2
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcCcccccccccchhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 888 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~k~L~PT~lG~~v~~~L 888 (1158)
.|..+|-+.| || +++|-..+|++|.++|||.+..+.+.+|+.|+.+...+
T Consensus 32 ~s~~ela~~l---~i-s~~tv~~~l~~Le~~Gli~r~~~~~~Lt~~g~~~~~~~ 81 (139)
T 2x4h_A 32 AKINRIAKDL---KI-APSSVFEEVSHLEEKGLVKKKEDGVWITNNGTRSINYL 81 (139)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHH
T ss_pred cCHHHHHHHh---CC-ChHHHHHHHHHHHHCCCEEecCCeEEEChhHHHHHHHH
Confidence 4555555544 77 57888899999999999998777899999999765443
No 47
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=47.56 E-value=15 Score=35.30 Aligned_cols=51 Identities=12% Similarity=0.166 Sum_probs=38.1
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| || +++|-..+|+.|.++|||.+.. ..+.+|+.|+.+...+.
T Consensus 55 ~t~~ela~~l---~~-~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 112 (152)
T 3bj6_A 55 ATAPQLGAAL---QM-KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIR 112 (152)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHHH
Confidence 4555666555 66 5778889999999999998742 25889999998766543
No 48
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=46.77 E-value=12 Score=35.85 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=38.1
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-------Ccccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-------~k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| |+ +++|-..+|+.|.++|||.+. ...+.+|+.|+.+.+.+.
T Consensus 57 ~t~~ela~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 114 (150)
T 2rdp_A 57 LTVGELSNKM---YL-ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVI 114 (150)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHH
Confidence 4555665554 55 678888999999999999873 124889999998776554
No 49
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=46.13 E-value=7 Score=35.32 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=39.1
Q ss_pred CCHhHHHHHHHhcCCCCCcc-hHHHHHHhhccceEEEc-----Ccccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPST-YASTLKVLQDRNYVTVK-----SRILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpAT-rAsIIe~L~~R~YV~~k-----~k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| || +++| -..+|+.|.++|||... ...+.+|+.|+.+.+.+.
T Consensus 31 ~t~~eLa~~l---~i-s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~~~ 87 (95)
T 2pg4_A 31 PSLAEIVKAS---GV-SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAECLE 87 (95)
T ss_dssp CCHHHHHHHH---CC-CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHHHHH
Confidence 5667777666 77 5566 89999999999999842 235899999998776654
No 50
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=45.61 E-value=5.9 Score=38.75 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=37.3
Q ss_pred CHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-------Ccccccccccchhhhhhh
Q 001100 836 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 836 TEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-------~k~L~PT~lG~~v~~~L~ 889 (1158)
|..+|-+.| || +++|-..+|+.|.++|||++. ...+.+|+.|+.+.+.+.
T Consensus 53 t~~eLa~~l---~~-~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 109 (147)
T 4b8x_A 53 PMSKIGERL---MV-HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAAT 109 (147)
T ss_dssp EHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHHH
Confidence 344555444 56 578899999999999999873 235899999998776543
No 51
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=45.46 E-value=4.5 Score=38.58 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=38.0
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-------Ccccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-------~k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| |+ +++|-..+|+.|.++|||.+. ...+.+|+.|+.+.+.+.
T Consensus 54 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~ 111 (127)
T 2frh_A 54 YYLKDIINHL---NY-KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLL 111 (127)
T ss_dssp EEHHHHHHHS---SS-HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 4555665544 55 468899999999999999873 235889999998776554
No 52
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=45.10 E-value=11 Score=45.78 Aligned_cols=55 Identities=24% Similarity=0.296 Sum_probs=48.0
Q ss_pred CCeeEeeeEEEeccccCCCCCCCHhHHHHHHH-hcCCCCCcchHHHHHHhhccceEE
Q 001100 814 GDPLYLGEVELKQHHTQPPARYSEGSLVKKLE-ELGIGRPSTYASTLKVLQDRNYVT 869 (1158)
Q Consensus 814 Gd~v~~~~~~i~e~~TkPP~ryTEasLI~~ME-k~GIGTpATrAsIIe~L~~R~YV~ 869 (1158)
+..+.|.++.-+++...||++|+-.+|.+.+- +.|++..-|.. |.+.|++.|||.
T Consensus 263 ~~~~~V~~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~tm~-iAQ~LYE~glIT 318 (592)
T 1mw9_X 263 KARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMM-MAQRLYEAGYIT 318 (592)
T ss_dssp HCCEEEEEEEEEEEEECCCCCBCHHHHHHHHHHHHCCCHHHHHH-HHHHHHHTTSBC
T ss_pred CCCeEEEEEEEEEEeccCCCCccHHHHHHHHHHhhCCCHHHHHH-HHHHHHhCCeee
Confidence 44577889999999999999999999999885 57998887775 999999999995
No 53
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=44.46 E-value=7.1 Score=38.65 Aligned_cols=51 Identities=16% Similarity=0.065 Sum_probs=36.5
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| || +++|-..+|+.|.++|||++.. ..+.+|+.|+.+.+.+.
T Consensus 63 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 120 (168)
T 3u2r_A 63 MATLQIADRL---IS-RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLE 120 (168)
T ss_dssp EEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHHH
Confidence 3445555554 55 4679999999999999998742 25899999998776554
No 54
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=44.18 E-value=8.2 Score=37.34 Aligned_cols=50 Identities=24% Similarity=0.194 Sum_probs=37.6
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFL 888 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L 888 (1158)
.|..+|.+.| || +++|-..+|..|.++|||.+.. ..+.+|+.|+.+.+.+
T Consensus 62 ~t~~ela~~l---~~-s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 118 (153)
T 2pex_A 62 RSVSEIGERL---YL-DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKA 118 (153)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGGS
T ss_pred cCHHHHHHHh---CC-CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHHH
Confidence 3455565554 66 6788899999999999998742 2588999999876544
No 55
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=44.04 E-value=14 Score=35.67 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=36.9
Q ss_pred CHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 836 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 836 TEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
|..+|-+.| || +++|-..+|..|.++|||.+.. ..+.+|+.|+.+.+.+.
T Consensus 53 t~~ela~~l---~~-s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 109 (155)
T 1s3j_A 53 KVSEIAERM---EV-KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVL 109 (155)
T ss_dssp EHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHHH
Confidence 444555444 66 5788889999999999998742 24889999998766543
No 56
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=43.46 E-value=12 Score=36.46 Aligned_cols=51 Identities=25% Similarity=0.163 Sum_probs=37.7
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| || +++|-..+|+.|.++|||.+.. ..+.+|+.|+.+.+.+.
T Consensus 67 ~t~~ela~~l---~i-s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 124 (162)
T 3cjn_A 67 LPIGTLGIFA---VV-EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLW 124 (162)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 3445565554 66 5788889999999999998741 24889999998766543
No 57
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=42.03 E-value=13 Score=35.11 Aligned_cols=50 Identities=14% Similarity=0.103 Sum_probs=36.9
Q ss_pred CHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 836 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 836 TEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
|..+|.+. .|+ +++|-..+|+.|.++|||.+.. ..+.+|+.|+.+...+.
T Consensus 50 ~~~~la~~---l~~-~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 106 (138)
T 1jgs_A 50 TPVELKKV---LSV-DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCH 106 (138)
T ss_dssp CHHHHHHH---HTC-CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHH---HCC-ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHH
Confidence 45555543 466 6778889999999999998741 24889999998766543
No 58
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=41.31 E-value=11 Score=35.99 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=38.7
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-------Ccccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-------~k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| |+ +++|-..+|+.|.++|||++. ...+.+|+.|+.+.+.+.
T Consensus 51 ~t~~eLa~~l---~~-~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 108 (140)
T 3hsr_A 51 LNIKKLGERV---FL-DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLA 108 (140)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHH
T ss_pred cCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHHH
Confidence 3445566555 56 688999999999999999874 136889999998776553
No 59
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=41.17 E-value=17 Score=34.43 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=38.3
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|.+.| |+ +++|-..+|..|.++|||.+.. ..+.+|+.|+.+...+.
T Consensus 52 ~~~~ela~~l---~~-~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 109 (142)
T 2bv6_A 52 VNVKKVVTEL---AL-DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELS 109 (142)
T ss_dssp EEHHHHHHHT---TC-CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHT
T ss_pred cCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHHH
Confidence 3455565555 66 6788999999999999998742 25889999998766543
No 60
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=40.86 E-value=15 Score=34.75 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=37.6
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhh-hhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVS-AFL 888 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~-~~L 888 (1158)
.|..+|-+.| || +++|-..+|+.|.++|||.+.. ..+.+|+.|+.+. ..+
T Consensus 46 ~~~~ela~~l---~i-s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~~~ 103 (142)
T 3bdd_A 46 LHQLALQERL---QI-DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNP 103 (142)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHTTSC
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 4555666554 66 6788899999999999998742 2588999999876 443
No 61
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=40.68 E-value=17 Score=34.46 Aligned_cols=51 Identities=10% Similarity=0.003 Sum_probs=38.4
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-----C--cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-----S--RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-----~--k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| || +++|-..+|..|.++|||.+. + ..+.+|+.|+.+.+.+.
T Consensus 51 ~~~~ela~~l---~~-s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 108 (146)
T 2gxg_A 51 KTMAYLANRY---FV-TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGI 108 (146)
T ss_dssp BCHHHHHHHT---TC-CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHh---CC-CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHHH
Confidence 4566666554 66 577888999999999999874 1 24889999998766543
No 62
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=40.65 E-value=15 Score=36.33 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=37.1
Q ss_pred CHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-----C--cccccccccchhhhhhh
Q 001100 836 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-----S--RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 836 TEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-----~--k~L~PT~lG~~v~~~L~ 889 (1158)
|..+|-+.| || +++|-..+|+.|.++|||.+. + ..+.+|+.|+.+.+.+.
T Consensus 61 t~~eLa~~l---~i-s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 117 (168)
T 2nyx_A 61 NLATLATLL---GV-QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVT 117 (168)
T ss_dssp EHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHh---CC-CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH
Confidence 445565555 56 678888999999999999873 1 24889999998766543
No 63
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=39.52 E-value=9.4 Score=39.73 Aligned_cols=52 Identities=21% Similarity=0.063 Sum_probs=39.9
Q ss_pred CHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhhcc
Q 001100 836 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLSHY 891 (1158)
Q Consensus 836 TEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~~~ 891 (1158)
|..+|-+.| || +++|-..+|..|.++|||.+.. ..+.+|+.|+.+.+.+...
T Consensus 64 t~~eLa~~l---~i-~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 122 (207)
T 2fxa_A 64 SISEIAKFG---VM-HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEE 122 (207)
T ss_dssp EHHHHHHHT---TC-CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHHHH
Confidence 445555544 55 6889999999999999998742 2689999999888776643
No 64
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=38.13 E-value=18 Score=33.44 Aligned_cols=50 Identities=14% Similarity=0.138 Sum_probs=36.0
Q ss_pred HhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 837 EGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 837 EasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
-.+|.+.|. || +++|-..+++.|.+.|||++.. ..+.+|+.|+.+...+.
T Consensus 30 ~~eLa~~l~--~i-s~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~~~~ 86 (107)
T 2hzt_A 30 TSELKRLMP--NI-TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGILD 86 (107)
T ss_dssp HHHHHHHCT--TS-CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHH
T ss_pred HHHHHHHhc--CC-CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHHHHHH
Confidence 344554432 44 6788899999999999998642 25889999998766554
No 65
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=37.76 E-value=34 Score=30.48 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=37.0
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~------k~L~PT~lG~~v~~~L~ 889 (1158)
.|-.+|.+.| || +++|-..+|+.|.++|||.... ..+..|+.|..+...+.
T Consensus 35 ~s~~ela~~l---~i-s~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~~~ 91 (109)
T 1sfx_A 35 MRVSEIAREL---DL-SARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEFK 91 (109)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHHHH
Confidence 5666676665 66 5688899999999999998632 24667888887665543
No 66
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=37.52 E-value=11 Score=34.17 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=36.8
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEE--cCc--ccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTV--KSR--ILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~--k~k--~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+. .|| +++|-..+|+.|.++|||.. ++| .+.+|+.|+.+.+.+.
T Consensus 31 ~t~~eLa~~---l~i-~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~~ 85 (95)
T 2qvo_A 31 VYIQYIASK---VNS-PHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIK 85 (95)
T ss_dssp EEHHHHHHH---SSS-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHH---HCc-CHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHHH
Confidence 344455444 366 56889999999999999943 233 5899999998766554
No 67
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=36.51 E-value=18 Score=34.42 Aligned_cols=51 Identities=10% Similarity=0.138 Sum_probs=39.2
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| |+ +++|-..+|..|.++|||.+.. ..+.+|+.|+.+...+.
T Consensus 52 ~t~~eLa~~l---~~-s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 52 LTNSELARRL---NV-SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp CCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence 7777877776 66 5678889999999999998632 36999999998766553
No 68
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=36.06 E-value=17 Score=38.36 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=37.3
Q ss_pred hHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-Ccccccccccchhhhhh
Q 001100 838 GSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-SRILYPEFRGRMVSAFL 888 (1158)
Q Consensus 838 asLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-~k~L~PT~lG~~v~~~L 888 (1158)
..|-+.| |+ +++|-..+|+.|.++|||++. .+.+.+|+.|+.+...+
T Consensus 28 ~~La~~l---~v-s~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~ 75 (230)
T 1fx7_A 28 ARIAERL---DQ-SGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAV 75 (230)
T ss_dssp HHHHHHH---TC-CHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHH
T ss_pred HHHHHHH---Cc-CHHHHHHHHHHHHHCCCEEEeCCccEEECHHHHHHHHHH
Confidence 4555544 67 788899999999999999985 45799999999876544
No 69
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=34.63 E-value=19 Score=33.80 Aligned_cols=55 Identities=18% Similarity=0.176 Sum_probs=40.3
Q ss_pred CCCCCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc---Ccccccccccchhhhhhh
Q 001100 832 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK---SRILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 832 P~ryTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k---~k~L~PT~lG~~v~~~L~ 889 (1158)
|.+.|-.+|.+.|+ || +++|-..++..|.+.|+|++. ...+.+|+.|+.+...+.
T Consensus 40 ~~~~~~~eL~~~l~--gi-s~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~l~~~l~ 97 (111)
T 3df8_A 40 STRQNFNDIRSSIP--GI-SSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVRNSLM 97 (111)
T ss_dssp SSCBCHHHHHHTST--TC-CHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcc--CC-CHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHHHHHHHHH
Confidence 44434555554332 44 567889999999999999886 457899999998777665
No 70
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=34.07 E-value=45 Score=31.42 Aligned_cols=51 Identities=20% Similarity=0.280 Sum_probs=39.0
Q ss_pred CCHhHHHHHHHhcCC-C---CC-cchHHHHHHhhccceEEEc-----C---cccccccccchhh
Q 001100 835 YSEGSLVKKLEELGI-G---RP-STYASTLKVLQDRNYVTVK-----S---RILYPEFRGRMVS 885 (1158)
Q Consensus 835 yTEasLI~~MEk~GI-G---Tp-ATrAsIIe~L~~R~YV~~k-----~---k~L~PT~lG~~v~ 885 (1158)
.+-.+|.+.|++.|. + ++ +|-..++..|.+.|||+.. + +.+..|+.|+.+.
T Consensus 27 ~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l 90 (118)
T 2esh_A 27 SHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYL 90 (118)
T ss_dssp BCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHH
T ss_pred CCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHH
Confidence 345678889987664 2 68 9999999999999999763 1 2468899998654
No 71
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=34.04 E-value=13 Score=35.19 Aligned_cols=51 Identities=14% Similarity=0.055 Sum_probs=36.8
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|-+.| || +++|-..+|+.|.++|||.+.. ..+.+|+.|+.+...+.
T Consensus 51 ~t~~ela~~l---~~-s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 108 (142)
T 2fbi_A 51 MESYQLANQA---CI-LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMS 108 (142)
T ss_dssp EEHHHHHHHT---TC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHHH
Confidence 3444554443 66 5778889999999999998741 24889999998766543
No 72
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=33.87 E-value=32 Score=33.51 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=34.9
Q ss_pred CCCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc------Ccccccccccchhhhhh
Q 001100 834 RYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK------SRILYPEFRGRMVSAFL 888 (1158)
Q Consensus 834 ryTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k------~k~L~PT~lG~~v~~~L 888 (1158)
..|..+|-+.| || +++|-..+|+.|.++|||... .+.+.+|+.|+.+.+.+
T Consensus 52 ~~t~~eLa~~l---~~-~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~~~~ 108 (148)
T 4fx0_A 52 DLTMSELAARI---GV-ERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQKA 108 (148)
T ss_dssp --CHHHHHHHH---TC-CHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHHHHHH
T ss_pred CcCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHHHHHH
Confidence 45666766655 44 467889999999999999542 23699999999876654
No 73
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=31.94 E-value=28 Score=45.45 Aligned_cols=55 Identities=18% Similarity=0.371 Sum_probs=47.8
Q ss_pred CCeeEeeeEEEeccccCCCCCCCHhHHHHHHH-hcCCCCCcchHHHHHHhhccceEE
Q 001100 814 GDPLYLGEVELKQHHTQPPARYSEGSLVKKLE-ELGIGRPSTYASTLKVLQDRNYVT 869 (1158)
Q Consensus 814 Gd~v~~~~~~i~e~~TkPP~ryTEasLI~~ME-k~GIGTpATrAsIIe~L~~R~YV~ 869 (1158)
+..+.|.++.-+++...||++||-.+|.+.+- +.|++..-|.. |.+.|++.|||.
T Consensus 795 ~~~~~V~~v~~k~~~~~pp~pf~t~~Lq~~a~~~~g~s~~~tm~-iaQ~LYe~g~iT 850 (1104)
T 4ddu_A 795 DDVVTVVELQEAEEEKNPLPPYTTSSALSEISQKLRLGVQEVMD-ILQDLFEKGFIT 850 (1104)
T ss_dssp CCEEEEEEEEEEEEEECCCCCBCHHHHHHHHHHHSSCCHHHHHH-HHHHHHHTTSBS
T ss_pred CCcEEEEEEEeeeEEecCCCCCCHHHHHHHHHHHcCCCHHHHHH-HHHHHHhCCcee
Confidence 55678889999999999999999999999886 46998877775 899999999985
No 74
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=31.75 E-value=29 Score=42.84 Aligned_cols=55 Identities=16% Similarity=0.302 Sum_probs=47.6
Q ss_pred CCeeEeeeEEEeccccCCCCCCCHhHHHHHHH-hcCCCCCcchHHHHHHhhc-cceEE
Q 001100 814 GDPLYLGEVELKQHHTQPPARYSEGSLVKKLE-ELGIGRPSTYASTLKVLQD-RNYVT 869 (1158)
Q Consensus 814 Gd~v~~~~~~i~e~~TkPP~ryTEasLI~~ME-k~GIGTpATrAsIIe~L~~-R~YV~ 869 (1158)
+..+.|.++.-+++...||++|+-.+|.+.+- +.|++..-|. .|.+.|++ .|||.
T Consensus 271 ~~~~~V~~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~Tm-~iAQ~LYE~~glIT 327 (659)
T 1i7d_A 271 GQPAIVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVL-DICQKLYETHKLIT 327 (659)
T ss_dssp SCEEECCEEEEEEEEECCCCSBCHHHHHHHHHHHHCCCHHHHH-HHHHHHHHTSCCBS
T ss_pred cCCeEEEEEEeEEEEecCCCCccHHHHHHHHHHhcCCCHHHHH-HHHHHHHHhCCeEe
Confidence 45788899999999999999999999999985 4799877666 68999999 79985
No 75
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=31.49 E-value=14 Score=35.14 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=32.3
Q ss_pred cCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhh
Q 001100 847 LGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFL 888 (1158)
Q Consensus 847 ~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L 888 (1158)
.|| +++|-..+|..|.++|||++.. ..+.+|+.|+.+.+.+
T Consensus 64 l~~-~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~~ 111 (147)
T 1z91_A 64 LYL-DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKA 111 (147)
T ss_dssp TTC-CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGT
T ss_pred HCC-CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHH
Confidence 366 6788889999999999998742 2488999999876544
No 76
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=31.36 E-value=9.8 Score=35.60 Aligned_cols=54 Identities=9% Similarity=0.132 Sum_probs=39.1
Q ss_pred CCHhHHHHHHHh-cCCCCCcchHHHHHHhhccceEEEc--Cc---ccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEE-LGIGRPSTYASTLKVLQDRNYVTVK--SR---ILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk-~GIGTpATrAsIIe~L~~R~YV~~k--~k---~L~PT~lG~~v~~~L~ 889 (1158)
.|..+|.+.|.. .+| +++|-..+|+.|.++|||.+. ++ .+..|+.|..+...+.
T Consensus 25 ~t~~ela~~l~~~~~~-s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~~~ 84 (123)
T 1okr_A 25 ASANNIIEEIQMQKDW-SPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSK 84 (123)
T ss_dssp EEHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHHH
T ss_pred cCHHHHHHHHhccCCC-cHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHHHHH
Confidence 566777777743 233 578999999999999999874 22 2568899987665443
No 77
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=30.92 E-value=50 Score=35.31 Aligned_cols=75 Identities=25% Similarity=0.244 Sum_probs=49.8
Q ss_pred CCeEEEEecchHHHHHHhhcCCCEEEEeeccccccccccCCCCCCCCCCcceEecCcchHHHHHHHHHHhccCCeEEEcc
Q 001100 349 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILAS 428 (1158)
Q Consensus 349 ~k~LIIvEkPskAk~Ia~~LG~~y~V~~s~GHl~dL~~~~~~v~p~~~f~~~~~v~~~~~k~lk~Ik~l~k~ad~IIlAT 428 (1158)
.+.|||+|.+--|-++..+.|.++.|. +.|.-. .. ..+.+...-.++.+...||+|.
T Consensus 150 ~~~v~i~EG~~Dals~~~~~g~~~~v~-slg~~~---------------~~-------~~~~l~~~~~~l~~~~~iil~~ 206 (255)
T 1nui_A 150 GKKIVVTEGEIDMLTVMELQDCKYPVV-SLGHGA---------------SA-------AKKTCAANYEYFDQFEQIILMF 206 (255)
T ss_dssp BSCCEEESSHHHHHHHHHHHTTCSCEE-CCTTTT---------------TT-------HHHHHHHTHHHHTTBSCEEEEC
T ss_pred CCEEEEEeCHHHHHHHHHhhCCCcEEE-ECCCcc---------------ch-------hHHHHHHHHHHhcCCCEEEEEe
Confidence 478999999998888887766544332 222111 10 1123332223445668999999
Q ss_pred CCCccccHHHHHHHHHHh
Q 001100 429 DPDREGEAIAWHIVEMLQ 446 (1158)
Q Consensus 429 DpDREGE~Ia~~Ile~l~ 446 (1158)
|.|.-|+.-+..+.+.+.
T Consensus 207 D~D~aG~~aa~~~~~~l~ 224 (255)
T 1nui_A 207 DMDEAGRKAVEEAAQVLP 224 (255)
T ss_dssp CSSHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHhcc
Confidence 999999999999998874
No 78
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=30.59 E-value=30 Score=33.67 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=38.5
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-Ccccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-SRILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-~k~L~PT~lG~~v~~~L~ 889 (1158)
.|...|-+. .|| +++|-..+|..|.+.|||.+. ++.+.+|+.|..+...+.
T Consensus 55 ~~~~~la~~---l~v-s~~tvs~~l~~Le~~Glv~r~~~~~~~lT~~g~~~~~~~~ 106 (155)
T 2h09_A 55 ARQVDMAAR---LGV-SQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESR 106 (155)
T ss_dssp CCHHHHHHH---HTS-CHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHH---hCc-CHHHHHHHHHHHHHCCCEEEecCCceEEChhHHHHHHHHH
Confidence 355555544 478 567788899999999999875 567999999998765543
No 79
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=29.67 E-value=16 Score=34.39 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=36.5
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-------Ccccccccccchhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFL 888 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-------~k~L~PT~lG~~v~~~L 888 (1158)
.|..+|.+.| |+ +++|-..+|+.|.++|||.+. ...+.+|+.|+.+.+.+
T Consensus 53 ~t~~ela~~l---~~-~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 109 (140)
T 2nnn_A 53 CPQNQLGRLT---AM-DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAG 109 (140)
T ss_dssp BCHHHHHHHT---TC-CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHH
Confidence 3445555443 55 567888999999999999874 12488999999876554
No 80
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=29.61 E-value=16 Score=38.44 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=39.7
Q ss_pred hHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcCcccccccccchhhhhhhccccccc
Q 001100 838 GSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVT 896 (1158)
Q Consensus 838 asLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~k~L~PT~lG~~v~~~L~~~f~~l~ 896 (1158)
.+|-+.| |++ ++|-..++++|.+.|||+...+.+..|+.|+.+...+...+.++.
T Consensus 34 ~~LA~~L---gvS-~~SV~~~lkkL~e~GLV~~~~~Gv~LTe~G~~~A~~i~~rhr~~~ 88 (200)
T 2p8t_A 34 KQISERL---ELG-EGSVRTLLRKLSHLDIIRSKQRGHFLTLKGKEIRDKLLSMFSEPI 88 (200)
T ss_dssp HHHHHHH---TCC-HHHHHHHHHHHHHTTSEEEC--CEEECHHHHHHHHHHHTTBCCCE
T ss_pred HHHHHHh---CCC-HHHHHHHHHHHHHCCCEEEeCCCeEECHHHHHHHHHHHHHHHHhc
Confidence 4444444 565 667778999999999999877889999999988776665444443
No 81
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=27.65 E-value=19 Score=34.54 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=37.7
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-Ccccccccccchhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-SRILYPEFRGRMVSAFL 888 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-~k~L~PT~lG~~v~~~L 888 (1158)
.|..+|-+. .||. ++|-..+|..|.+.|||.+. ++.+.+|+.|+.+...+
T Consensus 23 ~~~~ela~~---l~vs-~~tvs~~l~~Le~~Glv~r~~~~~~~LT~~g~~~~~~~ 73 (142)
T 1on2_A 23 ARVSDIAEA---LAVH-PSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKRL 73 (142)
T ss_dssp CCHHHHHHH---HTSC-HHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHH
T ss_pred CCHHHHHHH---hCCC-HHHHHHHHHHHHHCCCEEEeeCceEEEchhHHHHHHHH
Confidence 445555544 4774 67788899999999999875 46799999999876544
No 82
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=27.57 E-value=46 Score=32.08 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=37.5
Q ss_pred HhHHHHHHHhcCCC-CCcchHHHHHHhhccceEEEc--------Ccccccccccchhhh
Q 001100 837 EGSLVKKLEELGIG-RPSTYASTLKVLQDRNYVTVK--------SRILYPEFRGRMVSA 886 (1158)
Q Consensus 837 EasLI~~MEk~GIG-TpATrAsIIe~L~~R~YV~~k--------~k~L~PT~lG~~v~~ 886 (1158)
--.|.+.+++.|++ .++|--.++.+|.+.|||... .+.+..|+.|+....
T Consensus 36 GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~ 94 (123)
T 3ri2_A 36 GYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLR 94 (123)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHH
Confidence 34688888887644 468888899999999999763 234668999986544
No 83
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=27.14 E-value=56 Score=36.54 Aligned_cols=35 Identities=17% Similarity=0.511 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCeEE--EEe-cccCceeEEecCCCCCCcccc
Q 001100 963 KDRSCPVCGEGTLI--FKV-SRFGAGYFIGCNQHPRCNYIA 1000 (1158)
Q Consensus 963 ~~g~CPkCGkG~l~--~k~-gr~G~~~f~GCs~yP~C~~~~ 1000 (1158)
..+.||.||...+. ++. |..+...|+-|+- |.+..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~---C~t~W 218 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSL---CACEW 218 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETT---TCCEE
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCC---CCCEE
Confidence 35799999986543 232 3233335788874 76543
No 84
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=26.43 E-value=20 Score=38.68 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=37.8
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc--CcccccccccchhhhhhhcccccccChhhhHHHHHHhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK--SRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVS 912 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k--~k~L~PT~lG~~v~~~L~~~f~~l~~p~~TA~~E~~Ld~Ia 912 (1158)
.|-.+|-+.| |+ .++|-..++++|.+.|||.+. .+.+.+|++|+.+...... ...|++..++++
T Consensus 167 ~s~~eLA~~l---gl-sksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~l~~~~~~----------~~~w~~aq~~~~ 232 (244)
T 2wte_A 167 TGITELAKML---DK-SEKTLINKIAELKKFGILTQKGKDRKVELNELGLNVIKLNKS----------VIESSKSSEELV 232 (244)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHHHHTC-----------------------
T ss_pred CCHHHHHHHH---Cc-CHHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHHHHHHHhc----------ccccHHHHHHHH
Confidence 3444554443 56 467888999999999999885 3469999999987665432 345666665554
Q ss_pred c
Q 001100 913 A 913 (1158)
Q Consensus 913 ~ 913 (1158)
+
T Consensus 233 ~ 233 (244)
T 2wte_A 233 K 233 (244)
T ss_dssp -
T ss_pred h
Confidence 4
No 85
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=25.97 E-value=21 Score=37.46 Aligned_cols=72 Identities=10% Similarity=-0.008 Sum_probs=50.3
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-cccccccccchhhhhhhcccccccChhhhHHHHHHhhhhhc
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-RILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSA 913 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-k~L~PT~lG~~v~~~L~~~f~~l~~p~~TA~~E~~Ld~Ia~ 913 (1158)
.+..+|-+.| |+ +++|-..+|+.|.++|||.+.. +.+.+|+.|+.+...+.. .-..||..|..+.
T Consensus 21 ~~~~~lA~~l---~v-s~~tvs~~l~~Le~~GlV~r~~~~~i~LT~~G~~~~~~~~~---------~h~~~e~~l~~~l- 86 (214)
T 3hrs_A 21 ITNKEIAQLM---QV-SPPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSDLYR---------KHRLIEVFLVHHL- 86 (214)
T ss_dssp CCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHH---------HHHHHHHHHHHTT-
T ss_pred cCHHHHHHHH---CC-ChhHHHHHHHHHHHCCCEEEecCCCeEECHHHHHHHHHHHH---------HHHHHHHHHHHHh-
Confidence 4555666555 55 4678899999999999999865 679999999987765542 1347777774322
Q ss_pred CCchHHHH
Q 001100 914 GLTEWKGL 921 (1158)
Q Consensus 914 Gk~~~~~~ 921 (1158)
..+|+++
T Consensus 87 -g~~~~e~ 93 (214)
T 3hrs_A 87 -GYTTEEI 93 (214)
T ss_dssp -CCCHHHH
T ss_pred -CCCHHHH
Confidence 2455554
No 86
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=25.73 E-value=20 Score=38.67 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=34.1
Q ss_pred CCCCCcchHHHHHHhhccceEEEc-----C--cccccccccchhhhhhhc
Q 001100 848 GIGRPSTYASTLKVLQDRNYVTVK-----S--RILYPEFRGRMVSAFLSH 890 (1158)
Q Consensus 848 GIGTpATrAsIIe~L~~R~YV~~k-----~--k~L~PT~lG~~v~~~L~~ 890 (1158)
++- ++|-..+|+.|.+.|||.+. . ..+.+|+.|+.+++.+..
T Consensus 61 ~~~-~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~~~ 109 (250)
T 1p4x_A 61 CYK-QSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERVT 109 (250)
T ss_dssp SSC-GGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHHH
T ss_pred CCC-HhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHHHHH
Confidence 454 89999999999999999873 2 258899999987766653
No 87
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=25.29 E-value=46 Score=31.66 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=37.1
Q ss_pred HhHHHHHHHhcCCC--CCcchHHHHHHhhccceEEEc---------Ccccccccccchhhh
Q 001100 837 EGSLVKKLEELGIG--RPSTYASTLKVLQDRNYVTVK---------SRILYPEFRGRMVSA 886 (1158)
Q Consensus 837 EasLI~~MEk~GIG--TpATrAsIIe~L~~R~YV~~k---------~k~L~PT~lG~~v~~ 886 (1158)
=-+|.+.|++.|.- .++|--.++..|.+.|||+.. .+.+.+|+.|+....
T Consensus 27 Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~ 87 (117)
T 4esf_A 27 GYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELE 87 (117)
T ss_dssp HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHH
Confidence 35688888877642 567888899999999999753 124678999986544
No 88
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=25.13 E-value=50 Score=31.22 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=36.4
Q ss_pred HhHHHHHHHhcCCC----CCcchHHHHHHhhccceEEEc---------Ccccccccccchhhh
Q 001100 837 EGSLVKKLEELGIG----RPSTYASTLKVLQDRNYVTVK---------SRILYPEFRGRMVSA 886 (1158)
Q Consensus 837 EasLI~~MEk~GIG----TpATrAsIIe~L~~R~YV~~k---------~k~L~PT~lG~~v~~ 886 (1158)
--.|.+.+++.+-| .++|--.++..|.+.|||+.. .+.+..|+.|+....
T Consensus 28 Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~ 90 (116)
T 3f8b_A 28 VYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMR 90 (116)
T ss_dssp HHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHH
Confidence 35688888765332 578888999999999999753 124678888886443
No 89
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=25.11 E-value=25 Score=34.68 Aligned_cols=33 Identities=21% Similarity=0.539 Sum_probs=19.7
Q ss_pred CCCCCCCCCCeEEEEecccCceeEEecCCCCCCcccc
Q 001100 964 DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIA 1000 (1158)
Q Consensus 964 ~g~CPkCGkG~l~~k~gr~G~~~f~GCs~yP~C~~~~ 1000 (1158)
..-||+||. +|..+.++-+....|.|.+ |.|..
T Consensus 24 ~~FCPeCgN-mL~pked~~~~~l~~~Crt---CgY~~ 56 (133)
T 3qt1_I 24 FRFCRDCNN-MLYPREDKENNRLLFECRT---CSYVE 56 (133)
T ss_dssp CCBCTTTCC-BCBCCBCTTTCCBCCBCSS---SCCBC
T ss_pred CeeCCCCCC-EeeECccCCCceeEEECCC---CCCcE
Confidence 567999996 7766654322223566753 65543
No 90
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=24.01 E-value=21 Score=32.99 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=31.6
Q ss_pred CCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 851 RPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 851 TpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
+++|-..+++.|.+.|||++.. ..+..|+.|+.+...+.
T Consensus 52 s~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~ 97 (107)
T 2fsw_A 52 SEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPIID 97 (107)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHHHHH
Confidence 6789999999999999998742 25889999987766554
No 91
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.70 E-value=64 Score=30.23 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=34.3
Q ss_pred CCCCccceeeeccCCCcceEEeCCCCCCCCCcccccCCCCCccccCHHHHHHHhcCCcccCCCCCCCcCeEEee--ccCc
Q 001100 1027 HHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRL--ARAG 1104 (1158)
Q Consensus 1027 ~cPkcG~~v~lk~GrfG~yv~c~~d~kg~kpK~~slpk~~~~~sItle~Al~ll~~pk~lG~cP~cG~~I~i~~--GRyG 1104 (1158)
.||.|+.+|.-. |.+..|.. |...+. ..+-||+|+.++.+.+ |--+
T Consensus 34 ~CP~Cq~eL~~~----g~~~hC~~--------------C~~~f~--------------~~a~CPdC~q~LevLkACGAvd 81 (101)
T 2jne_A 34 HCPQCQHVLDQD----NGHARCRS--------------CGEFIE--------------MKALCPDCHQPLQVLKACGAVD 81 (101)
T ss_dssp BCSSSCSBEEEE----TTEEEETT--------------TCCEEE--------------EEEECTTTCSBCEEEEETTEEE
T ss_pred cCccCCCcceec----CCEEECcc--------------ccchhh--------------ccccCcchhhHHHHHHHhcCcc
Confidence 499999988753 34666752 222111 1356999999988765 4456
Q ss_pred ceeecCCe
Q 001100 1105 FSVRHRRT 1112 (1158)
Q Consensus 1105 ~Yi~~~~~ 1112 (1158)
.||.++..
T Consensus 82 YFC~~chg 89 (101)
T 2jne_A 82 YFCQHGHG 89 (101)
T ss_dssp EEETTTTE
T ss_pred hhhccCCc
Confidence 67776543
No 92
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=23.07 E-value=19 Score=41.82 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=32.5
Q ss_pred CCcchHHHHHHhhccceEEEc-----Cc--ccccccccchhhhhhhc
Q 001100 851 RPSTYASTLKVLQDRNYVTVK-----SR--ILYPEFRGRMVSAFLSH 890 (1158)
Q Consensus 851 TpATrAsIIe~L~~R~YV~~k-----~k--~L~PT~lG~~v~~~L~~ 890 (1158)
.++|-..+|++|.++|||++. +| .|.+|+.|+.+++.+..
T Consensus 433 ~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~~~~~ 479 (487)
T 1hsj_A 433 KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLIS 479 (487)
T ss_dssp CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHHHHHH
Confidence 478999999999999999873 22 58999999988776653
No 93
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=22.43 E-value=50 Score=42.83 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=45.3
Q ss_pred eeEeeeEEEeccccCCCCCCCHhHHHHHHH-hcCCCCCcchHHHHHHhhccceEE
Q 001100 816 PLYLGEVELKQHHTQPPARYSEGSLVKKLE-ELGIGRPSTYASTLKVLQDRNYVT 869 (1158)
Q Consensus 816 ~v~~~~~~i~e~~TkPP~ryTEasLI~~ME-k~GIGTpATrAsIIe~L~~R~YV~ 869 (1158)
.+.|.++.-++++..||++|+-.+|.+.+- +.|++..-|. .|.+.|++.|||.
T Consensus 755 ~~~V~~v~~k~~~~~pp~pf~~~~Lq~~a~~~~g~s~~~tm-~iaQ~LYe~g~iT 808 (1054)
T 1gku_B 755 DLTIKLVEEREELRTPLPPYTTETMLSDANRILKFSVKQTM-QIAQELFENGLIT 808 (1054)
T ss_dssp EEEEEEEEEEEEEECCCCCBCHHHHHHHHHHTSCCCHHHHH-HHHHHHHHTTSBB
T ss_pred EEEEEEEEeeEEEecCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHHHHHhcCcee
Confidence 467888899999999999999999999985 4688766665 5889999999996
No 94
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=22.33 E-value=23 Score=37.33 Aligned_cols=45 Identities=22% Similarity=0.205 Sum_probs=37.8
Q ss_pred HhcCCCCCcchHHHHHHhhccceEEEc----Ccccccccccchhhhhhhc
Q 001100 845 EELGIGRPSTYASTLKVLQDRNYVTVK----SRILYPEFRGRMVSAFLSH 890 (1158)
Q Consensus 845 Ek~GIGTpATrAsIIe~L~~R~YV~~k----~k~L~PT~lG~~v~~~L~~ 890 (1158)
+..|| +++|-..+|+.|-+.+|+.+. ++.+.+|+.|+.+...+..
T Consensus 35 ~~L~i-sq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~~~~ 83 (230)
T 3cta_A 35 DMLGI-SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTEFA 83 (230)
T ss_dssp HHHTS-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred HHHCC-CHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHHHHHH
Confidence 34566 678899999999999999998 8899999999988766543
No 95
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=22.03 E-value=61 Score=30.65 Aligned_cols=50 Identities=14% Similarity=0.038 Sum_probs=36.8
Q ss_pred hHHHHHHHhcCC--CCCcchHHHHHHhhccceEEEc---------Ccccccccccchhhhh
Q 001100 838 GSLVKKLEELGI--GRPSTYASTLKVLQDRNYVTVK---------SRILYPEFRGRMVSAF 887 (1158)
Q Consensus 838 asLI~~MEk~GI--GTpATrAsIIe~L~~R~YV~~k---------~k~L~PT~lG~~v~~~ 887 (1158)
-+|.+.|++.|. =.++|--.++..|.+.|||+.. .+.+..|+.|+.....
T Consensus 26 yei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~ 86 (115)
T 4esb_A 26 YELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEE 86 (115)
T ss_dssp HHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHH
Confidence 467888887553 2578888999999999999752 1246799999975443
No 96
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=21.89 E-value=38 Score=34.46 Aligned_cols=30 Identities=27% Similarity=0.566 Sum_probs=20.1
Q ss_pred CCCCCCCCCCeEEEEecccCceeEEecCC----CCCCcccc
Q 001100 964 DRSCPVCGEGTLIFKVSRFGAGYFIGCNQ----HPRCNYIA 1000 (1158)
Q Consensus 964 ~g~CPkCGkG~l~~k~gr~G~~~f~GCs~----yP~C~~~~ 1000 (1158)
+..||.|+ |.+.... + .|-|.+ |.+|.|..
T Consensus 78 l~~CP~C~-G~l~y~~---~---~Y~C~G~isewtkC~~~t 111 (160)
T 2riq_A 78 LLPCEECS-GQLVFKS---D---AYYCTGDVTAWTKCMVKT 111 (160)
T ss_dssp ECCCTTTC-CCEEEET---T---EEEECCEEETTEECCCEE
T ss_pred CCCCCCCC-CEEEEeC---C---eEEECCCCCCcccCcccC
Confidence 46899999 6666542 2 344766 46798864
No 97
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=21.73 E-value=1.3e+02 Score=30.94 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=37.5
Q ss_pred CeEEEEecch-------HHHHHHhhcCCCEEEEeeccccccccccCCCCCCCCCCcceEecCcchHHHHHHHHHHhccCC
Q 001100 350 KSVVVVESVT-------KAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAE 422 (1158)
Q Consensus 350 k~LIIvEkPs-------kAk~Ia~~LG~~y~V~~s~GHl~dL~~~~~~v~p~~~f~~~~~v~~~~~k~lk~Ik~l~k~ad 422 (1158)
+.+||+=|+. .|+.+++.+..+..|... ++.|||. ++ .+++ ....+.+..+++.+..||
T Consensus 4 ~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~i--dl~dLP~----~~--~d~~------~~~p~~~~~l~~~i~~aD 69 (190)
T 3u7r_A 4 TVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLL--HIGDLPH----YN--DDLW------ADAPESVLRLKDRIEHSD 69 (190)
T ss_dssp EEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEEC--CGGGSCC----CC--GGGG------GGCCHHHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEE--ecccCCC----CC--CCcc------cCCCHHHHHHHHHHHhCC
Confidence 4567776652 344444555666655432 4555532 11 1111 112356778889999999
Q ss_pred eEEEcc
Q 001100 423 NLILAS 428 (1158)
Q Consensus 423 ~IIlAT 428 (1158)
.||++|
T Consensus 70 ~~ii~t 75 (190)
T 3u7r_A 70 AVLAIT 75 (190)
T ss_dssp EEEEEC
T ss_pred cEEEec
Confidence 999987
No 98
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=21.66 E-value=1.1e+02 Score=35.19 Aligned_cols=26 Identities=15% Similarity=0.274 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHhc--cCCeEEEccCCCc
Q 001100 407 AWTHLKSIKVALS--GAENLILASDPDR 432 (1158)
Q Consensus 407 ~~k~lk~Ik~l~k--~ad~IIlATDpDR 432 (1158)
...+++.|+++++ +.+.|+||||++.
T Consensus 288 ~~~~~~~i~~~~~~~~~~~VyiATD~~~ 315 (408)
T 4ap5_A 288 LEGAVRKIRSLMKTHRLDKVFVATDAVR 315 (408)
T ss_dssp HHHHHHHHHHHHHHHTCSCEEEEECCCH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCch
Confidence 4566677777775 4678999999864
No 99
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=21.58 E-value=36 Score=31.65 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=37.7
Q ss_pred CCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 835 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 835 yTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
.+-.+|-+.|. || +++|-..++..|.+.|||++.. ..+..|+.|+.+...+.
T Consensus 36 ~~~~eLa~~l~--~i-s~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~~~~ 94 (112)
T 1z7u_A 36 KRNGELMRALD--GI-TQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYDALS 94 (112)
T ss_dssp BCHHHHHHHST--TC-CHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHhc--cC-CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHHHHH
Confidence 34555665542 55 6788999999999999998742 24788999987665543
No 100
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=21.48 E-value=46 Score=32.15 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=31.7
Q ss_pred CCcchHHHHHHhhccceEEEcC-------cccccccccchhhhhhh
Q 001100 851 RPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 889 (1158)
Q Consensus 851 TpATrAsIIe~L~~R~YV~~k~-------k~L~PT~lG~~v~~~L~ 889 (1158)
+++|-..++..|.+.|||.+.. ..+.+|+.|+.+...+.
T Consensus 62 s~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~ 107 (131)
T 1yyv_A 62 SEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDXVA 107 (131)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHHHHH
Confidence 6788999999999999998742 25889999988766554
No 101
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=21.09 E-value=86 Score=32.69 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=41.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhccccCCCCCeeEEEEEecCCCcCCCHHHHHHHHHHHH
Q 001100 621 QQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIF 680 (1158)
Q Consensus 621 Q~~AskklG~Sa~~Tm~iAQ~LYE~~k~~~g~~~GlITYPRTDS~~Ls~~~~~~i~~~i~ 680 (1158)
|.+.++++|+|+.-+-.+.++|-+. |||+|-+--..+|++...+.+..++.
T Consensus 23 ~~~lA~~l~vs~~tvs~~l~~Le~~---------GlV~r~~~~~i~LT~~G~~~~~~~~~ 73 (214)
T 3hrs_A 23 NKEIAQLMQVSPPAVTEMMKKLLAE---------ELLIKDKKAGYLLTDLGLKLVSDLYR 73 (214)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHT---------TSEEEETTTEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChhHHHHHHHHHHHC---------CCEEEecCCCeEECHHHHHHHHHHHH
Confidence 5577888999999999999999995 89999886667899987666555543
No 102
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=20.76 E-value=54 Score=32.36 Aligned_cols=50 Identities=14% Similarity=0.069 Sum_probs=37.0
Q ss_pred CHhHHHHHHHhc-----CCCCCcchHHHHHHhhccceEEEc---------Ccccccccccchhhh
Q 001100 836 SEGSLVKKLEEL-----GIGRPSTYASTLKVLQDRNYVTVK---------SRILYPEFRGRMVSA 886 (1158)
Q Consensus 836 TEasLI~~MEk~-----GIGTpATrAsIIe~L~~R~YV~~k---------~k~L~PT~lG~~v~~ 886 (1158)
+-.+|.+.|++. +| +++|--.++..|.+.|||... .+.+.+|+.|+.+..
T Consensus 56 ~gyeI~~~l~~~~~~~~~i-s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~ 119 (145)
T 1xma_A 56 YGYEISKNIRIKTDELYVI-KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYK 119 (145)
T ss_dssp EHHHHHHHHHHHHTTSCCC-CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCccCc-ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHH
Confidence 445688888764 33 578899999999999999753 135788999986543
No 103
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=20.75 E-value=1.2e+02 Score=27.88 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHhccCCeEEEccCCCccccHHHHHHHHHHhhcccccCCccEEEEEEcccCHHHHHHHHHhcccccHhHHH
Q 001100 407 AWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQ 486 (1158)
Q Consensus 407 ~~k~lk~Ik~l~k~ad~IIlATDpDREGE~Ia~~Ile~l~~~~~~~~~k~vkRl~fs~lT~~aI~~A~~nlr~~d~~L~~ 486 (1158)
..+.++.|++ .++..||+|.|++.. +-.+|..+|.. .+.|+..+ .|..++=.|+--..-.-..+.+
T Consensus 24 ~~~v~kai~~--gka~lViiA~D~~~~---~~~~i~~~c~~-----~~vp~~~~----~s~~eLG~A~Gk~~~~~~ai~D 89 (101)
T 3v7q_A 24 EDLVIKEIRN--ARAKLVLLTEDASSN---TAKKVTDKCNY-----YKVPYKKV----ESRAVLGRSIGKEARVVVAVTD 89 (101)
T ss_dssp HHHHHHHHHT--TCCSEEEEETTSCHH---HHHHHHHHHHH-----TTCCEEEE----SCHHHHHHHTTSSCCSEEEECC
T ss_pred hhhhHHHHhc--CceeEEEEecccccc---chhhhcccccc-----cCCCeeee----chHHHHHhhhCccceEEEEEec
Confidence 3344455543 468899999999965 55666666643 34566543 6899999998643111245556
Q ss_pred HHHHHHHHhh
Q 001100 487 AYLARRALDY 496 (1158)
Q Consensus 487 A~~AR~~lD~ 496 (1158)
+++|+.+.+.
T Consensus 90 ~g~a~~i~~~ 99 (101)
T 3v7q_A 90 QGFANKLISL 99 (101)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHh
Confidence 7777776654
No 104
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=20.42 E-value=83 Score=26.08 Aligned_cols=14 Identities=36% Similarity=0.876 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCeEE
Q 001100 963 KDRSCPVCGEGTLI 976 (1158)
Q Consensus 963 ~~g~CPkCGkG~l~ 976 (1158)
....||+||...+.
T Consensus 14 ~~~~Cp~Cg~~~~~ 27 (57)
T 1qyp_A 14 TKITCPKCGNDTAY 27 (57)
T ss_dssp EECCCTTTCCSEEE
T ss_pred eEeECCCCCCCEEE
Confidence 35689999986554
No 105
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=20.34 E-value=25 Score=37.98 Aligned_cols=51 Identities=10% Similarity=0.071 Sum_probs=38.7
Q ss_pred CCCHhHHHHHHHhcCCCCCcchHHHHHHhhccceEEEc-----C--cccccccccchhhhhh
Q 001100 834 RYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-----S--RILYPEFRGRMVSAFL 888 (1158)
Q Consensus 834 ryTEasLI~~MEk~GIGTpATrAsIIe~L~~R~YV~~k-----~--k~L~PT~lG~~v~~~L 888 (1158)
..|..+|-+.| |+ +++|-..+|+.|.++|||.+. + ..+.+|+.|+.+++.+
T Consensus 174 ~~t~~eLa~~l---~i-~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~~ 231 (250)
T 1p4x_A 174 IVLLKDLIETI---HH-KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQL 231 (250)
T ss_dssp CEEHHHHHHHS---SS-CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHH
T ss_pred CcCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHHH
Confidence 34556666555 55 578899999999999999873 2 2588999999876644
No 106
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=20.20 E-value=62 Score=31.10 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=28.6
Q ss_pred CCHhHHHHHHHh-cCCCCCcchHHHHHHhhccceEEEc
Q 001100 835 YSEGSLVKKLEE-LGIGRPSTYASTLKVLQDRNYVTVK 871 (1158)
Q Consensus 835 yTEasLI~~MEk-~GIGTpATrAsIIe~L~~R~YV~~k 871 (1158)
.|..+|.+.|.. .+| .++|-..+|+.|.++|||.+.
T Consensus 25 ~t~~el~~~l~~~~~~-~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 25 QTVRQVHEALSARRDL-AYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp EEHHHHHHHHTTTCCC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHhccCCC-CHHHHHHHHHHHHHCCCEEEE
Confidence 567788888753 234 578999999999999999874
No 107
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=20.02 E-value=55 Score=27.82 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=24.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHhccccCCCCCeeEEEE
Q 001100 623 DAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLIT 658 (1158)
Q Consensus 623 ~AskklG~Sa~~Tm~iAQ~LYE~~k~~~g~~~GlIT 658 (1158)
.++++||.+.++++++..+|=++ |||.
T Consensus 30 ~~a~kygV~kdeV~~~LrrLe~K---------GLI~ 56 (59)
T 2xvc_A 30 HFSKVYGVEKQEVVKLLEALKNK---------GLIA 56 (59)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHT---------TSEE
T ss_pred HHHHHhCCCHHHHHHHHHHHHHC---------CCee
Confidence 56788999999999999999996 8885
Done!