Query 001101
Match_columns 1158
No_of_seqs 139 out of 159
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 15:51:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1019 Retinoblastoma pathway 100.0 6.9E-84 1.5E-88 753.7 15.0 787 1-1021 1-828 (837)
2 PF06584 DIRP: DIRP; InterPro 100.0 2.6E-38 5.7E-43 301.7 10.1 102 629-730 1-109 (109)
3 KOG1019 Retinoblastoma pathway 99.9 1.2E-28 2.7E-33 290.8 3.6 567 182-791 1-599 (837)
4 TIGR01557 myb_SHAQKYF myb-like 99.0 7.4E-10 1.6E-14 96.1 5.9 49 43-93 2-56 (57)
5 PF00249 Myb_DNA-binding: Myb- 98.8 8.7E-09 1.9E-13 85.2 5.9 45 44-88 1-47 (48)
6 smart00717 SANT SANT SWI3, AD 98.3 1.8E-06 3.8E-11 68.5 5.6 44 44-87 1-45 (49)
7 cd00167 SANT 'SWI3, ADA2, N-Co 98.2 2E-06 4.3E-11 67.4 5.1 42 46-87 1-43 (45)
8 PF13921 Myb_DNA-bind_6: Myb-l 97.8 2.3E-05 4.9E-10 67.1 4.9 41 47-87 1-41 (60)
9 COG5259 RSC8 RSC chromatin rem 97.5 9.4E-05 2E-09 86.0 4.6 45 45-95 280-324 (531)
10 KOG1279 Chromatin remodeling f 96.9 0.00096 2.1E-08 79.5 4.8 56 41-102 250-305 (506)
11 PLN03212 Transcription repress 96.6 0.0021 4.6E-08 70.6 4.8 44 43-86 77-120 (249)
12 KOG0457 Histone acetyltransfer 95.9 0.011 2.5E-07 69.0 5.9 59 40-100 68-127 (438)
13 PLN03091 hypothetical protein; 95.6 0.015 3.3E-07 68.3 5.3 45 43-87 66-110 (459)
14 PLN03212 Transcription repress 94.9 0.037 8E-07 61.2 5.3 45 42-86 23-69 (249)
15 PLN03091 hypothetical protein; 94.3 0.048 1E-06 64.3 4.8 42 44-85 14-57 (459)
16 KOG4329 DNA-binding protein [G 92.6 0.55 1.2E-05 54.6 9.4 50 46-99 279-329 (445)
17 KOG4468 Polycomb-group transcr 92.5 0.1 2.2E-06 63.2 3.6 47 45-91 89-150 (782)
18 COG5118 BDP1 Transcription ini 92.2 0.17 3.6E-06 58.8 4.8 42 45-86 366-407 (507)
19 KOG0724 Zuotin and related mol 91.4 0.097 2.1E-06 59.1 1.9 52 43-96 52-103 (335)
20 COG5114 Histone acetyltransfer 90.9 0.3 6.5E-06 55.8 5.0 50 41-92 60-110 (432)
21 smart00333 TUDOR Tudor domain. 89.2 0.86 1.9E-05 38.5 5.3 52 717-770 2-54 (57)
22 KOG0048 Transcription factor, 86.9 0.89 1.9E-05 49.7 5.0 51 44-94 62-114 (238)
23 PF07039 DUF1325: SGF29 tudor- 85.8 1.1 2.4E-05 45.4 4.7 51 717-767 71-126 (130)
24 PF09465 LBR_tudor: Lamin-B re 84.8 3 6.4E-05 37.3 6.2 38 716-753 4-43 (55)
25 PF15057 DUF4537: Domain of un 83.9 1.7 3.7E-05 43.7 5.0 50 721-772 1-51 (124)
26 KOG1194 Predicted DNA-binding 82.0 1.8 4E-05 51.6 5.0 65 43-117 186-250 (534)
27 smart00743 Agenet Tudor-like d 80.8 4 8.7E-05 35.3 5.5 37 717-753 2-39 (61)
28 PF15057 DUF4537: Domain of un 80.2 1.9 4E-05 43.4 3.7 53 715-769 53-112 (124)
29 KOG0049 Transcription factor, 79.0 2.2 4.7E-05 52.9 4.4 48 43-90 359-407 (939)
30 PF13837 Myb_DNA-bind_4: Myb/S 73.1 4.4 9.5E-05 37.0 3.8 53 45-97 2-73 (90)
31 KOG0048 Transcription factor, 71.5 4.6 0.0001 44.3 4.2 43 44-86 9-53 (238)
32 KOG4167 Predicted DNA-binding 71.2 8 0.00017 48.8 6.4 85 46-146 621-712 (907)
33 KOG3554 Histone deacetylase co 67.8 6.3 0.00014 47.4 4.5 45 46-90 287-332 (693)
34 PLN03162 golden-2 like transcr 66.8 14 0.0003 43.7 6.7 51 43-93 236-291 (526)
35 KOG0049 Transcription factor, 66.0 6 0.00013 49.3 3.9 51 44-94 412-466 (939)
36 PF09038 53-BP1_Tudor: Tumour 62.6 15 0.00032 37.6 5.3 50 720-772 5-56 (122)
37 PF06003 SMN: Survival motor n 58.3 19 0.00042 40.6 6.0 55 716-772 67-124 (264)
38 PLN03142 Probable chromatin-re 58.1 11 0.00023 49.8 4.4 55 35-92 815-870 (1033)
39 PF11717 Tudor-knot: RNA bindi 58.0 12 0.00027 32.5 3.4 34 718-752 1-38 (55)
40 cd04508 TUDOR Tudor domains ar 56.4 22 0.00048 29.1 4.5 33 721-753 1-34 (48)
41 KOG0051 RNA polymerase I termi 50.6 16 0.00035 45.5 4.1 49 35-84 375-423 (607)
42 smart00561 MBT Present in Dros 47.9 64 0.0014 31.4 6.9 60 712-771 22-85 (96)
43 KOG3038 Histone acetyltransfer 44.3 21 0.00046 40.5 3.4 37 716-752 197-236 (264)
44 PF13873 Myb_DNA-bind_5: Myb/S 42.7 53 0.0011 29.7 5.2 48 44-91 2-71 (78)
45 KOG2009 Transcription initiati 40.9 17 0.00038 45.1 2.3 45 43-87 408-452 (584)
46 cd08780 Death_TRADD Death Doma 37.7 30 0.00065 33.9 2.9 24 48-74 1-24 (90)
47 KOG4485 Uncharacterized conser 35.3 18 0.00038 43.8 1.2 39 653-691 257-307 (724)
48 KOG0050 mRNA splicing protein 31.7 50 0.0011 40.8 4.1 40 46-86 61-100 (617)
49 KOG1583 UDP-N-acetylglucosamin 29.7 32 0.00069 39.8 2.0 39 59-120 187-228 (330)
50 cd04788 HTH_NolA-AlbR Helix-Tu 29.4 1.1E+02 0.0025 29.2 5.3 51 1093-1153 42-92 (96)
51 KOG3026 Splicing factor SPF30 27.0 54 0.0012 37.1 3.1 39 717-755 90-130 (262)
52 PF10591 SPARC_Ca_bdg: Secrete 27.0 27 0.00058 34.7 0.7 29 654-682 67-95 (113)
53 cd00592 HTH_MerR-like Helix-Tu 25.8 1.7E+02 0.0037 27.6 5.8 57 1092-1153 40-96 (100)
54 PF12776 Myb_DNA-bind_3: Myb/S 22.9 2.2E+02 0.0047 26.4 5.8 44 46-89 1-62 (96)
55 KOG0888 Nucleoside diphosphate 22.5 1.9E+02 0.004 31.0 5.8 81 36-122 33-128 (156)
56 KOG0050 mRNA splicing protein 22.5 93 0.002 38.6 4.1 45 42-86 5-50 (617)
57 KOG3841 TEF-1 and related tran 22.2 1E+02 0.0022 37.0 4.3 43 43-85 75-138 (455)
58 KOG4578 Uncharacterized conser 21.8 35 0.00077 40.1 0.5 27 656-682 348-377 (421)
59 CHL00141 rpl24 ribosomal prote 20.7 1.6E+02 0.0035 28.3 4.5 38 714-752 5-42 (83)
60 COG4985 ABC-type phosphate tra 20.2 2.3E+02 0.0051 32.3 6.2 55 884-938 186-243 (289)
61 PF05641 Agenet: Agenet domain 20.1 2.5E+02 0.0055 25.4 5.4 36 718-753 1-40 (68)
No 1
>KOG1019 consensus Retinoblastoma pathway protein LIN-9/chromatin-associated protein Aly [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-84 Score=753.72 Aligned_cols=787 Identities=34% Similarity=0.424 Sum_probs=650.9
Q ss_pred CCCCc--CccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHHHHHHHcCCChHHHHHHHh-cch
Q 001101 1 MAPTR--RSKSVNKRVAYTSEVASKKKAENADRSGKRKRKLSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVR-NRT 77 (1158)
Q Consensus 1 Map~r--~srsv~k~~~~~~e~~~~~~~~~~~k~k~rk~k~~~~l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~-tRt 77 (1158)
|||.| |++.++|+++ |+++|+.+....+|.++||++++|+++++|+..|+++||++|++||+.|+++++.++ +|+
T Consensus 1 ~a~vRkrk~~~~~~~~~--ndtsp~~~~~~~sKt~qR~~~~~d~l~pq~s~~~~e~~~k~~~k~~~~~r~~~~~~~~~R~ 78 (837)
T KOG1019|consen 1 MAAVRKRKSKSVDKRFT--NDTSPRYDSGSTSKTPQRKRKLADKLSPQWSKLELERFYKAYRKRGREWRKSPAAVRSTRS 78 (837)
T ss_pred CCccccccccccccccc--ccccccccccccccCCCCCcccccccCcchhHhhhhhhhhcccccccccccccccccchhh
Confidence 89999 8889999999 999999999999999999999999999999999999999999999999999999999 599
Q ss_pred HHHHHHHHhhhhhhcccCcccccccceeeeeeccccccCCCCCCccccccccCccccccccCCcc-CCCCCCCCCCCCCc
Q 001101 78 AEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGILAGSDGEQESDEATGSSQKSQKCAGGKF-QNPPPKGSDGPSPD 156 (1158)
Q Consensus 78 ~~~v~s~y~~~k~~l~lpeg~as~~gliammtdhy~~l~~s~S~~es~~~~~~~~k~~kr~~~~~-~~~~~~~~~~~~~~ 156 (1158)
+.||+.||.||+||+++|+|+++++|+|+||||||+++.||.++.|++++++..++.+|++|+++ +.+. ....
T Consensus 79 s~~vell~~~n~Ay~S~~~~~~si~G~~~~~t~~ys~~~gs~~~~e~~d~sE~e~k~~k~kr~~va~~~D------~~eg 152 (837)
T KOG1019|consen 79 SNMVELLKAMNKAYLSLSEGTESILGLIEPMTDHYSVLEGSGPEGESNDASEKERKAIKRKRAKVAKRSD------FDEG 152 (837)
T ss_pred hhHHHHHHhhhcccccccccccccccccccCCCccchhcCCCCCCccchhhhhhHHHHHHHhhccccccc------cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988 4443 2222
Q ss_pred ccccccCCCCCCccccccccccCCCCcccccCCCccccccccccCCcccccCccccCCCCCCCCCChhhHHHHHHHHHHH
Q 001101 157 LLNFQSAAPNYGCLSLLKKRRSGSRPRAVAKRTPRVPVSYSYDKDNTEKYISPIKQGLKPRLGSIDDDVAHEIALALTEA 236 (1158)
Q Consensus 157 ~~~~~~~~s~~g~~s~lkk~r~~~~~~avgKRTPRvpv~~~~~kd~~e~~i~p~~~~~k~~~d~~ddd~~h~~AlAltea 236 (1158)
+---..+.|..||+++||+.++ -++.++++|++++-..+..+|.+.+..|..|..++. +..| ++
T Consensus 153 ~~l~n~~~s~~~~~~~~~q~~~---~~~~k~~~~~~~~~~~~~aed~~~~s~~n~r~~~ql-~r~~------------~k 216 (837)
T KOG1019|consen 153 LRLTNEAKSLSGHLWFFKQFRT---SQADKPTLKQFLVYKNQTAEDAPTLSRPNIRALWQL-DRRD------------GK 216 (837)
T ss_pred ccchhhhccccchHHHHHHHHh---hhhccccchhhhHHHhhhhhhhhhccchhhhhhhhh-hccc------------cc
Confidence 2334456788999999999997 569999999999999999999999988888887773 4333 68
Q ss_pred hhcCCCCcccCCCCCCCCCC--CCCCCCCCccccccccCCCCCCCCccccccccCCCCCCCCCCcccccchhhhccccch
Q 001101 237 SQRGGSLLVSQTPKRKRGKP--SPVQKGSRTCDVSEMNSSKPHGSEMDEDGRELSLGSTDADNGYYSRDKIYLMDAETAD 314 (1158)
Q Consensus 237 sqRggSp~vs~tp~r~~~~~--Sp~~~~~~~~~~se~~~sk~~g~~~de~~~e~Slgs~~a~~~~y~~d~s~l~~~eg~~ 314 (1158)
++|||. |.++.+.. .|-+.+.++.+--+ -.+++.+++|.+.|++ +....-|+-.++++.||+|++..
T Consensus 217 sRr~~~------~~f~~e~~E~~~~~~~~~~~~sr~-~~~~~~nss~~~~~~~----~i~~~l~~~~~~Ss~L~~~er~~ 285 (837)
T KOG1019|consen 217 SRRGSA------PFFREELSEQIPKRERIKTSQSRE-KFSKLKNSSMLRIGPR----SIPKPLGKPDRVSSLLMDMERMG 285 (837)
T ss_pred chhccc------hhhHhHHhhhhHHHHhhhhhhhhc-ccCCCCchHHhhhhhh----hcccccccCccchhhhhchhhcc
Confidence 899998 66766543 56565555543222 3455579999999999 66667789999999999999985
Q ss_pred hHHHHhhccccccccchhhhcccCCcchhhhhccCccccchhhhhcccchhhhcccccccCCcccccccccccccCCCcc
Q 001101 315 TVEIQQKGKRYHSKKLKQEESVSNHLDDIKEACSGTEEGQDMVVMKGKFAMEIADEKNSRSYSKGSKKRSKKVLFKRDES 394 (1158)
Q Consensus 315 ~v~~~~K~k~~~~~k~~ve~~~~~~~dD~~EAcSgteeg~~~~~~k~~~e~~v~~~k~~~~~~~~~~kRs~~lf~~~~e~ 394 (1158)
.++. +-+++|.+.+++++|
T Consensus 286 ~~~~---------kv~~~e~ae~sy~~d---------------------------------------------------- 304 (837)
T KOG1019|consen 286 LEEA---------KVVKDELAEGSYLDD---------------------------------------------------- 304 (837)
T ss_pred cccc---------eeEeechhhhhhhhh----------------------------------------------------
Confidence 5543 224566666666654
Q ss_pred hhhhHHHHHHHhh-ccCCCccccccccccccccCc------cccccccccCCCCCCCCccc-------------hhhhcc
Q 001101 395 SEFDALQTLADLS-LMMPETTADTELSLQLKEEKP------EAVNESKLKGNRSSTGVKDT-------------AIKTSK 454 (1158)
Q Consensus 395 ~~lDaL~tLadls-l~~p~~~~esess~q~~~e~~------k~~~~~~~s~~~~~~~~~~~-------------~~k~sk 454 (1158)
+|||++++|.++ +|+|...++++++.+.++++. +++.+..+++.++.+...+. .+.+.|
T Consensus 305 -~~~~~~~~ae~~~s~~p~~~l~S~~~t~~~~~~s~~i~d~~ss~~~iv~~~~~~~~~nv~~~ke~L~~~l~a~~~~k~k 383 (837)
T KOG1019|consen 305 -GLDALKLPAEESVSMLPGNRLESESSTHYKEERSGIIMDVNSSGFEIVETSPHIPKNNVSDTKELLDGKLRALSKRKIK 383 (837)
T ss_pred -hhhhhccchhhcccccccccchhhcccccccccccceeccCcCCceeeccCcCCccccchhhhhhhhhhhhhhhhhccc
Confidence 499999999999 999999999999999999882 33333445555544444333 233677
Q ss_pred cCCCCCCCCCccCccccCcccCCccccccccccchhhh------------hhhhHHHhhhhhccccccccccccccCccc
Q 001101 455 LGKDCTDDVSVIPESEEGNHLTNSGNRTKRQKFLPIKL------------RMDATEELKKFISKGKRSLSASQSKHGKLV 522 (1158)
Q Consensus 455 ~~k~~~~d~~~~~e~~~~~~~~~~~~~k~k~k~~~~~~------------k~~~~~~~~~~~~kgk~~~~~~~~~~~~~v 522 (1158)
+.|..+.|+..+++....+.+ ++++++.+.++. +......+.++.+++++....+..+|...+
T Consensus 384 ~~k~~s~d~~~v~~~il~~ls-----~~~~~~v~D~et~~ei~q~~S~~~~~~~~~~e~~s~v~~~r~~~~~a~~q~~t~ 458 (837)
T KOG1019|consen 384 PSKPLSTDGVRVSVAILMDLS-----RKRKLLVLDVETPKEISQSKSRNRGESTERLEKKSLVKGRRYSAVPANLQRLTK 458 (837)
T ss_pred ccccccCCCccchhHHhhhhc-----ccCccccccccchhhhhcccccccccchhhhhhhhhhhhhhhhhhhHHHHHhhh
Confidence 788889999999998775444 566666666653 111222236788889999888777999999
Q ss_pred CCCCC-CCCCcccccCCCCCCCcccccccCCCCCCccccchhhhhhchhhhhhhccchhhhhcccccccccCCCCCcccc
Q 001101 523 KPPEH-TSSTDHEKEGNNSASSTAHVRTANQVNLPTKVRSRRKMNMQKLLIERDKMSSEDILKSSEDIFNDQNRTNSSFF 601 (1158)
Q Consensus 523 ~~~e~-~~ssd~~~~~~~~~~~~~~~~~~~q~~l~~k~rsrRK~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 601 (1158)
+..+- .+-+|......|....+.++..-+..-++.|.+.+|++.+++.+.++.++..-+-..+... |+ ++.
T Consensus 459 ~i~~~~~l~~d~~~~~~d~~~~~~q~s~~~~~~~~Qk~~n~rd~elk~a~~e~~~~~e~~h~~~~s~--n~----~Sq-- 530 (837)
T KOG1019|consen 459 KIGEESRLTRDKKELGADADIQPRQVSKSGPAFQEQKAPNIRDIELKNALQEKALSGEQDHHMYFSR--ND----LSQ-- 530 (837)
T ss_pred hccchhhhhhhhhhcccccccccchhcccchhhhhhhcchhHHHHHHhHHHHHHhhcccchhhhccc--cc----hhH--
Confidence 99854 7888988888888999999998888899999999999999999999887644443333321 10 000
Q ss_pred ccHHHHHHHHHhhhccccccceeeeeccccCCChhhhccchHHHHHhhcCCCCCCccchhhHHHHHhhcCCCCCCcHHHH
Q 001101 602 DRAIKQKEQLSNCLSWYQVRVWCVSEWFYSTIDYPWFAKREFVEYLDHVGLSHVPRLTRVEWGVIRSSLGRPRRFSEQFL 681 (1158)
Q Consensus 602 ~~~~~l~~rL~n~L~~pkarRW~~~EwFYS~IDkp~F~~neF~~~L~~~~l~~~~rLtR~EW~~IRr~mGKPRRfS~aFl 681 (1158)
....++.++.+|+..+...+||++||||+++|.+||..-+|..||.+++|++++++++++|.+|-..+|.|| |..|.
T Consensus 531 -~~l~~~~kre~c~~~~~~~vd~i~~~~~~~~~~l~~~k~~~Td~L~~v~lg~~p~~s~V~~~vl~~~lqepr--s~~~~ 607 (837)
T KOG1019|consen 531 -SELLPKAKREECSSQAGRTVDHINEGFYSANPHLGFLKMEFTDYLNHVRLGGTPRLSAVEWSVLKSSLQEPR--STRIL 607 (837)
T ss_pred -HHhcchhHHHhhhccCchhHHHHHhHHhhcCcchhHHHhhhhhhhhccccccccchhhhhHHHHHHHhhcch--hhhhh
Confidence 112236799999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCCCCcccCCCccCCCEEEEEcCCCCCcccceEEEEecCeeEEEeccCCCceeEe
Q 001101 682 KEEKEKLNQYRESVRNHYSELRSGTKEGLPTDLARPLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFDKRELGIEFV 761 (1158)
Q Consensus 682 ~EER~kLE~~R~~IR~~q~~~~~~~~~~LP~dIP~PL~VG~kV~A~hp~~r~l~~GtVlavd~~~YrV~FdrpeLGv~~V 761 (1158)
.+||+.|+.|++.+|.+|.++...-.+.++.++.+||.|| |.||.|+++|||.|++++++.|-|-|+. ||++.|
T Consensus 608 ~~er~~lq~yvE~~~k~~~~l~s~~~~~~~t~~~r~~d~~----~s~p~t~e~~d~~~~~~~~n~~~~~~~~--~~a~~~ 681 (837)
T KOG1019|consen 608 QEEREKLQDYVESVRKTYHELRSEAGELLGTDLARKLDVG----ASHPKTREIHDGKILTVDHNKCNVLFDK--LGAELV 681 (837)
T ss_pred hhHHHHHHHHHHhhhcchhhhhccccccccchhccccccc----cCCcchhhhhhhhhhhcccccCccchhh--hccccc
Confidence 9999999999999999999999888899999999999999 9999999999999999999999999995 999999
Q ss_pred cccccccCCCCCCCccccccccccccccchhhhhhhhcCCCCccccccccCCCCcccccccCCCCCCCCCCCCCcchhhh
Q 001101 762 QDIDCMPLNPLENMPASLTRPNVAFGKFMDNFTELQMNGQPRERDIEGYMKFTPCENLETAYAPSHISPSTNYPINNLLQ 841 (1158)
Q Consensus 762 pD~dvmp~~plEnmP~sl~~~~~~~n~~~~~~~~~~~~~rp~~~~~~g~~~f~~~~~~~~~~~~~~~sPs~~~p~~~ll~ 841 (1158)
||++|||+||++-||+.+++
T Consensus 682 ~~q~~~~ln~~~dk~e~~~r------------------------------------------------------------ 701 (837)
T KOG1019|consen 682 MDQDCMPLNPLEDKPEGLRR------------------------------------------------------------ 701 (837)
T ss_pred chhhccccChhhhhhhhhhh------------------------------------------------------------
Confidence 99999999999888855532
Q ss_pred ccCCccCCCccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccCCCCCC-CCcHHHHHHHHHHHHH
Q 001101 842 QHKGVSYTDSEVHVGSTGQAKEEDVLALSHLRHALDKKEAIVSELRCMNDEILENQKDGDNSF-KDSELFKKHYAAILLQ 920 (1158)
Q Consensus 842 ~~k~~~~~~~~~q~~~~~q~~eadi~aL~eLsKiLd~Ke~lV~eLr~MN~EAE~~~~~G~~s~-~~se~FQrrYA~vVlq 920 (1158)
+|..||++.++.+++|.+.. ..++.|+..|+.|..|
T Consensus 702 -------------------------------------------~~d~~~~~~~e~q~~g~~na~~~s~~~~~~~~~v~fq 738 (837)
T KOG1019|consen 702 -------------------------------------------QIDKCLEKEKEAQLGGHENAGYSSLFRPDELENVEFQ 738 (837)
T ss_pred -------------------------------------------hhhHHHHHHHHHHhCCCCCcCchhhcCchhHHHHHHH
Confidence 23345566666666666544 5568899999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHhHhhHHHHHHHHHHHH
Q 001101 921 LNDINEQVASALFCLRQRNTYQGNTCLTGLKPMSGLGNLGGGLPNSFDHSAYQTPESGPHVVEVVESSRSKAQKMVDVAV 1000 (1158)
Q Consensus 921 Le~vN~~l~~aL~~LRqrn~y~~~~~~~~~k~~~~~~~~~~g~~~~~d~~~~~~~Esgs~v~eiv~~Sr~kA~~mVd~A~ 1000 (1158)
+.+.|..++-.|.+++|+|+-. .. + .-++. +.+.... .++...+|++.+++|||..|+.+|++|||+||
T Consensus 739 ~~~~~d~~~~~L~g~~q~~~~~-----~~-~--~~~~E-~~~~l~~--qh~~~~~~~~~~~~eiv~~s~i~a~kmvd~a~ 807 (837)
T KOG1019|consen 739 MNQQLDPEEPHLDGKVQHNTIE-----IQ-K--LKLEE-IQRELAL--QHLDDEEEMEPEMVEIVTQSKIEAQKMVDAAI 807 (837)
T ss_pred HHhccCchhhhhhhhhhccchH-----hh-h--ccccc-hhhHHHh--hcCChhhhcCcchhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999821 11 1 12222 2222221 45677999999999999999999999999999
Q ss_pred HHHhhhhhcCC-chhhHHHHHH
Q 001101 1001 QALSSLEKEGN-GIERIEEAMD 1021 (1158)
Q Consensus 1001 QA~~~~~kege-~~~~i~~a~d 1021 (1158)
||.+ +++||| ....|+||++
T Consensus 808 qaa~-~~~~de~~~~~meea~~ 828 (837)
T KOG1019|consen 808 QAAS-STKEDEDVNLMMEEALE 828 (837)
T ss_pred HHHH-hhcccchhhHHHHHHHh
Confidence 9999 999999 8899999998
No 2
>PF06584 DIRP: DIRP; InterPro: IPR010561 DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related pathway, which is encoded by multiple eukaryotic genomes and is present in proteins including lin-9 of Caenorhabditis elegans, aly of Drosophila melanogaster and mustard weed. Studies of lin-9 and aly of fruit fly proteins containing DIRP suggest that this domain might be involved in development. Aly, lin-9, act in parallel to, or downstream of, activation of MAPK by the RTK-Ras signalling pathway.
Probab=100.00 E-value=2.6e-38 Score=301.67 Aligned_cols=102 Identities=44% Similarity=0.747 Sum_probs=95.7
Q ss_pred cccCCChhhhccchHHHHH-hhcCCCCCCccchhhHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhh-----
Q 001101 629 FYSTIDYPWFAKREFVEYL-DHVGLSHVPRLTRVEWGVIRSSLGRPRRFSEQFLKEEKEKLNQYRESVRNHYSEL----- 702 (1158)
Q Consensus 629 FYS~IDkp~F~~neF~~~L-~~~~l~~~~rLtR~EW~~IRr~mGKPRRfS~aFl~EER~kLE~~R~~IR~~q~~~----- 702 (1158)
|||+||+|||..|||++|| .++|++++++|||+||+.||++||||||||++||+|||++||+||++||++|+..
T Consensus 1 FYS~iDk~~f~~neF~~~L~e~~p~l~t~~ltR~eW~~IRr~mGKPRRfS~aF~~eER~~Le~~R~~iR~lQ~~~~~~~~ 80 (109)
T PF06584_consen 1 FYSFIDKPLFEDNEFQECLRESFPLLKTRKLTRVEWQKIRRSMGKPRRFSPAFLEEEREELERKRQKIRQLQQRKFHDTE 80 (109)
T ss_pred CCccccHHHHhhhHHHHHHHHhCCcccCCccCHHHHHHHHHHcCCCCcCcHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9999999999999999999 5589999999999999999999999999999999999999999999999988653
Q ss_pred -cccccCCCCcccCCCccCCCEEEEEcCC
Q 001101 703 -RSGTKEGLPTDLARPLYVGQRIIAVHPR 730 (1158)
Q Consensus 703 -~~~~~~~LP~dIP~PL~VG~kV~A~hp~ 730 (1158)
..+.+++||++||+||+|||||||+||+
T Consensus 81 ~~~~~~~~lP~~iP~pL~vG~kV~arl~~ 109 (109)
T PF06584_consen 81 LNSDLLEDLPDEIPLPLSVGTKVTARLPK 109 (109)
T ss_pred cchhhhhcCchhcCCcCCCCCEEEEecCC
Confidence 2356889999999999999999999985
No 3
>KOG1019 consensus Retinoblastoma pathway protein LIN-9/chromatin-associated protein Aly [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-28 Score=290.75 Aligned_cols=567 Identities=14% Similarity=0.031 Sum_probs=427.5
Q ss_pred CcccccCCCccccccccccCCcccccCccccCCCCCCCCCChhhHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCCCCC
Q 001101 182 PRAVAKRTPRVPVSYSYDKDNTEKYISPIKQGLKPRLGSIDDDVAHEIALALTEASQRGGSLLVSQTPKRKRGKPSPVQK 261 (1158)
Q Consensus 182 ~~avgKRTPRvpv~~~~~kd~~e~~i~p~~~~~k~~~d~~ddd~~h~~AlAlteasqRggSp~vs~tp~r~~~~~Sp~~~ 261 (1158)
+.|||| |||.+|.+.+.+|+++.|.++..+..++.-...+|+..|..+++++|+++ ..+.++.|..+..-++.+
T Consensus 1 ~a~vRk-rk~~~~~~~~~ndtsp~~~~~~~sKt~qR~~~~~d~l~pq~s~~~~e~~~-----k~~~k~~~~~r~~~~~~~ 74 (837)
T KOG1019|consen 1 MAAVRK-RKSKSVDKRFTNDTSPRYDSGSTSKTPQRKRKLADKLSPQWSKLELERFY-----KAYRKRGREWRKSPAAVR 74 (837)
T ss_pred CCcccc-cccccccccccccccccccccccccCCCCCcccccccCcchhHhhhhhhh-----hccccccccccccccccc
Confidence 579999 99999999999999999999999998998889999999999999999999 677899998886677777
Q ss_pred CCCccccccccCCCCCCCCccccccccCCCCCCCCCCcccccchhhhccccchhHHHHhhccccccccchhhhcccCCcc
Q 001101 262 GSRTCDVSEMNSSKPHGSEMDEDGRELSLGSTDADNGYYSRDKIYLMDAETADTVEIQQKGKRYHSKKLKQEESVSNHLD 341 (1158)
Q Consensus 262 ~~~~~~~se~~~sk~~g~~~de~~~e~Slgs~~a~~~~y~~d~s~l~~~eg~~~v~~~~K~k~~~~~k~~ve~~~~~~~d 341 (1158)
+.++..+.++..++.+...+-..++|..+|+++..++.|.-..-+.=.++|.+-++..+|..++++.++ . +.+
T Consensus 75 ~~R~s~~vell~~~n~Ay~S~~~~~~si~G~~~~~t~~ys~~~gs~~~~e~~d~sE~e~k~~k~kr~~v------a-~~~ 147 (837)
T KOG1019|consen 75 STRSSNMVELLKAMNKAYLSLSEGTESILGLIEPMTDHYSVLEGSGPEGESNDASEKERKAIKRKRAKV------A-KRS 147 (837)
T ss_pred chhhhhHHHHHHhhhcccccccccccccccccccCCCccchhcCCCCCCccchhhhhhHHHHHHHhhcc------c-ccc
Confidence 788888888888888888899999999999999999999988777778888888999999988887665 4 789
Q ss_pred hhhhhccCccccchhhhhcccchhhhcccccccCCcccccccccccccCCCcchhhhHHHHHHHhhccCCCccccccccc
Q 001101 342 DIKEACSGTEEGQDMVVMKGKFAMEIADEKNSRSYSKGSKKRSKKVLFKRDESSEFDALQTLADLSLMMPETTADTELSL 421 (1158)
Q Consensus 342 D~~EAcSgteeg~~~~~~k~~~e~~v~~~k~~~~~~~~~~kRs~~lf~~~~e~~~lDaL~tLadlsl~~p~~~~esess~ 421 (1158)
|..|+|++|.+-.+++.-+..+...+.+.-. +++-++..+-- +..+-||+.+++++..+++......+.+.
T Consensus 148 D~~eg~~l~n~~~s~~~~~~~~~q~~~~~~~--------k~~~~~~~~~~-~~~aed~~~~s~~n~r~~~ql~r~~~ksR 218 (837)
T KOG1019|consen 148 DFDEGLRLTNEAKSLSGHLWFFKQFRTSQAD--------KPTLKQFLVYK-NQTAEDAPTLSRPNIRALWQLDRRDGKSR 218 (837)
T ss_pred cccccccchhhhccccchHHHHHHHHhhhhc--------cccchhhhHHH-hhhhhhhhhccchhhhhhhhhhcccccch
Confidence 9999999999999999999888888775543 33444433333 77889999999999999999999999999
Q ss_pred cccccC------c------cccccccccCCCCCCCCccchhhhcccCCCCCCCCCccCccccCcccCCccccccccccch
Q 001101 422 QLKEEK------P------EAVNESKLKGNRSSTGVKDTAIKTSKLGKDCTDDVSVIPESEEGNHLTNSGNRTKRQKFLP 489 (1158)
Q Consensus 422 q~~~e~------~------k~~~~~~~s~~~~~~~~~~~~~k~sk~~k~~~~d~~~~~e~~~~~~~~~~~~~k~k~k~~~ 489 (1158)
|+..+. + .+..+-+-+-.....+++++..--.++ .-+..+...|++ .=+-+.+.+..+
T Consensus 219 r~~~~~f~~e~~E~~~~~~~~~~~~sr~~~~~~~nss~~~~~~~~i---------~~~l~~~~~~Ss-~L~~~er~~~~~ 288 (837)
T KOG1019|consen 219 RGSAPFFREELSEQIPKRERIKTSQSREKFSKLKNSSMLRIGPRSI---------PKPLGKPDRVSS-LLMDMERMGLEE 288 (837)
T ss_pred hccchhhHhHHhhhhHHHHhhhhhhhhcccCCCCchHHhhhhhhhc---------ccccccCccchh-hhhchhhccccc
Confidence 876622 0 000000000000112222221000000 000011111110 001111111111
Q ss_pred hhh-hh---------------hhHHHhhhhhcccccccccccc--ccCcccCCCCCCCCCcccccCCCCCCCcccccccC
Q 001101 490 IKL-RM---------------DATEELKKFISKGKRSLSASQS--KHGKLVKPPEHTSSTDHEKEGNNSASSTAHVRTAN 551 (1158)
Q Consensus 490 ~~~-k~---------------~~~~~~~~~~~kgk~~~~~~~~--~~~~~v~~~e~~~ssd~~~~~~~~~~~~~~~~~~~ 551 (1158)
.++ ++ ..++++..+++-|.+.-..... ++..+.......+++....... +..+.+.....
T Consensus 289 ~kv~~~e~ae~sy~~d~~~~~~~~ae~~~s~~p~~~l~S~~~t~~~~~~s~~i~d~~ss~~~iv~~~--~~~~~~nv~~~ 366 (837)
T KOG1019|consen 289 AKVVKDELAEGSYLDDGLDALKLPAEESVSMLPGNRLESESSTHYKEERSGIIMDVNSSGFEIVETS--PHIPKNNVSDT 366 (837)
T ss_pred ceeEeechhhhhhhhhhhhhhccchhhcccccccccchhhcccccccccccceeccCcCCceeeccC--cCCccccchhh
Confidence 111 11 1345555666666665444333 3322444445544444321111 22233344456
Q ss_pred CCCCCccccchh--hhhhchhhhhhhccchhhhhcccccccccCCCCCccccccHHHHHHHHHhhhccccccceeeeecc
Q 001101 552 QVNLPTKVRSRR--KMNMQKLLIERDKMSSEDILKSSEDIFNDQNRTNSSFFDRAIKQKEQLSNCLSWYQVRVWCVSEWF 629 (1158)
Q Consensus 552 q~~l~~k~rsrR--K~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rL~n~L~~pkarRW~~~EwF 629 (1158)
+++|++|.++++ |+...+++.+..+.-+..++... + .+......+...-+.+.+|++...+..||..| |
T Consensus 367 ke~L~~~l~a~~~~k~k~~k~~s~d~~~v~~~il~~l-------s-~~~~~~v~D~et~~ei~q~~S~~~~~~~~~~e-~ 437 (837)
T KOG1019|consen 367 KELLDGKLRALSKRKIKPSKPLSTDGVRVSVAILMDL-------S-RKRKLLVLDVETPKEISQSKSRNRGESTERLE-K 437 (837)
T ss_pred hhhhhhhhhhhhhhcccccccccCCCccchhHHhhhh-------c-ccCccccccccchhhhhcccccccccchhhhh-h
Confidence 899999999998 88888998887665444333222 1 23334455666678999999999999999999 9
Q ss_pred ccCCChhhhccchHHHHHhhcCCCCCCccchhhHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcccccCC
Q 001101 630 YSTIDYPWFAKREFVEYLDHVGLSHVPRLTRVEWGVIRSSLGRPRRFSEQFLKEEKEKLNQYRESVRNHYSELRSGTKEG 709 (1158)
Q Consensus 630 YS~IDkp~F~~neF~~~L~~~~l~~~~rLtR~EW~~IRr~mGKPRRfS~aFl~EER~kLE~~R~~IR~~q~~~~~~~~~~ 709 (1158)
||.++.+||..-.|...+...++++..+|||..|..++...++||++|..|..++++++--+|++.|.+|...+....++
T Consensus 438 ~s~v~~~r~~~~~a~~q~~t~~i~~~~~l~~d~~~~~~d~~~~~~q~s~~~~~~~~Qk~~n~rd~elk~a~~e~~~~~e~ 517 (837)
T KOG1019|consen 438 KSLVKGRRYSAVPANLQRLTKKIGEESRLTRDKKELGADADIQPRQVSKSGPAFQEQKAPNIRDIELKNALQEKALSGEQ 517 (837)
T ss_pred hhhhhhhhhhhhhHHHHHhhhhccchhhhhhhhhhcccccccccchhcccchhhhhhhcchhHHHHHHhHHHHHHhhccc
Confidence 99999999999999888888899999999999999999999999999999999999999999999999998777778899
Q ss_pred CCcccCCCccCCCEEEEEcCCCCCcccceEEEEecCeeEEEeccCCCceeEecccccccCCCCCCCcccccccccccccc
Q 001101 710 LPTDLARPLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFDKRELGIEFVQDIDCMPLNPLENMPASLTRPNVAFGKF 789 (1158)
Q Consensus 710 LP~dIP~PL~VG~kV~A~hp~~r~l~~GtVlavd~~~YrV~FdrpeLGv~~VpD~dvmp~~plEnmP~sl~~~~~~~n~~ 789 (1158)
.+.....+..+-|.++-.++.....+++-+.+||+..|.+.|+.|.+|+.++-++|||+..++.++|.....+...++.+
T Consensus 518 ~h~~~~s~n~~Sq~~l~~~~kre~c~~~~~~~vd~i~~~~~~~~~~l~~~k~~~Td~L~~v~lg~~p~~s~V~~~vl~~~ 597 (837)
T KOG1019|consen 518 DHHMYFSRNDLSQSELLPKAKREECSSQAGRTVDHINEGFYSANPHLGFLKMEFTDYLNHVRLGGTPRLSAVEWSVLKSS 597 (837)
T ss_pred chhhhccccchhHHHhcchhHHHhhhccCchhHHHHHhHHhhcCcchhHHHhhhhhhhhccccccccchhhhhHHHHHHH
Confidence 99999999999999998888888999999999999999999999999999999999999999999999887776566655
Q ss_pred ch
Q 001101 790 MD 791 (1158)
Q Consensus 790 ~~ 791 (1158)
++
T Consensus 598 lq 599 (837)
T KOG1019|consen 598 LQ 599 (837)
T ss_pred hh
Confidence 54
No 4
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=98.98 E-value=7.4e-10 Score=96.14 Aligned_cols=49 Identities=27% Similarity=0.515 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC-Ch---HHHHHHHh-cc-hHHHHHHHHhhhhhhcc
Q 001101 43 LGPQWSKEELERFYEAYRKYGK-DW---KKIAAAVR-NR-TAEMVEALFTMNRAYLS 93 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk-~W---kkva~~v~-tR-t~~~v~s~y~~~k~~l~ 93 (1158)
.+-.||.|||++|++|+..||. +| ++|+..++ +| |..||+|| .||||++
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH--~QKy~~k 56 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASH--LQKYRLK 56 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHH--HHHHHcc
Confidence 3568999999999999999999 99 99999876 78 99999999 9999986
No 5
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.80 E-value=8.7e-09 Score=85.17 Aligned_cols=45 Identities=42% Similarity=0.702 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC-hHHHHHHHh-cchHHHHHHHHhhh
Q 001101 44 GPQWSKEELERFYEAYRKYGKD-WKKIAAAVR-NRTAEMVEALFTMN 88 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~Gk~-Wkkva~~v~-tRt~~~v~s~y~~~ 88 (1158)
.+.||.||++.|++|+++||.+ |++||..|+ +||..|++.+|...
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 3689999999999999999998 999999999 99999999998753
No 6
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.25 E-value=1.8e-06 Score=68.46 Aligned_cols=44 Identities=36% Similarity=0.641 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CChHHHHHHHhcchHHHHHHHHhh
Q 001101 44 GPQWSKEELERFYEAYRKYG-KDWKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~G-k~Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
+..||.+|.+.|+.++..|| .+|..|+..+.+||..+|+..|..
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~ 45 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNN 45 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 35899999999999999999 899999999999999999998764
No 7
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.22 E-value=2e-06 Score=67.40 Aligned_cols=42 Identities=36% Similarity=0.671 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHcC-CChHHHHHHHhcchHHHHHHHHhh
Q 001101 46 QWSKEELERFYEAYRKYG-KDWKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 46 ~Ws~eEh~rF~ea~r~~G-k~Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
.||.||.+.|+.++..|| .+|.+|+..+++||..+|+..|..
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHH
Confidence 499999999999999999 899999999999999999998754
No 8
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.84 E-value=2.3e-05 Score=67.13 Aligned_cols=41 Identities=44% Similarity=0.733 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhh
Q 001101 47 WSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 47 Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
||+||-+..++++..||.+|++||.++++||..+|+..|..
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999998765
No 9
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.48 E-value=9.4e-05 Score=85.99 Aligned_cols=45 Identities=38% Similarity=0.711 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhhhhhcccC
Q 001101 45 PQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLP 95 (1158)
Q Consensus 45 ~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~~k~~l~lp 95 (1158)
.-||.+|+...|||+..||-||.|||.||||||++|--= .||.||
T Consensus 280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl------~FL~LP 324 (531)
T COG5259 280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCIL------HFLQLP 324 (531)
T ss_pred ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHH------HHHcCC
Confidence 489999999999999999999999999999999999744 499999
No 10
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.87 E-value=0.00096 Score=79.47 Aligned_cols=56 Identities=29% Similarity=0.552 Sum_probs=49.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhhhhhcccCccccccc
Q 001101 41 DMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTASVV 102 (1158)
Q Consensus 41 ~~l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~~k~~l~lpeg~as~~ 102 (1158)
.-.++-||+.|.-.-|||+.+||-||.+|+.||++||.+|-=.+ ||.||=+.+...
T Consensus 250 ~~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~k------FL~LPieD~~l~ 305 (506)
T KOG1279|consen 250 ESARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILK------FLRLPIEDPYLA 305 (506)
T ss_pred ccCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHH------HHhcCccchhhh
Confidence 34788999999999999999999999999999999999998665 999996665433
No 11
>PLN03212 Transcription repressor MYB5; Provisional
Probab=96.63 E-value=0.0021 Score=70.57 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHh
Q 001101 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFT 86 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~ 86 (1158)
-.+.||+||-+.-++.+..||..|.+||.+|..||..||+-.|+
T Consensus 77 ~kgpWT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWn 120 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWN 120 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHH
Confidence 45699999999999999999999999999999999999999885
No 12
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.90 E-value=0.011 Score=68.96 Aligned_cols=59 Identities=24% Similarity=0.469 Sum_probs=51.1
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHhcchHHHHHHHHhhhhhhcccCccccc
Q 001101 40 SDMLGPQWSKEELERFYEAYRKYGK-DWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTAS 100 (1158)
Q Consensus 40 ~~~l~~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v~tRt~~~v~s~y~~~k~~l~lpeg~as 100 (1158)
...+.+-||.+|--.||||+..||= +|.-||.+|||||.++++.|| .|+|+-=|=|-.+
T Consensus 68 ~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy--~k~fv~s~~~~~~ 127 (438)
T KOG0457|consen 68 FPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHY--LKHFVNSPIFPLP 127 (438)
T ss_pred CCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHH--HHHHhcCcccccc
Confidence 3457789999999999999999998 999999999999999999996 4778876644444
No 13
>PLN03091 hypothetical protein; Provisional
Probab=95.57 E-value=0.015 Score=68.26 Aligned_cols=45 Identities=24% Similarity=0.381 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhh
Q 001101 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
-.+.||+||-+..++.+..||..|.+||.++..||..+|+-.|+.
T Consensus 66 kKgpWT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWns 110 (459)
T PLN03091 66 KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNS 110 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHH
Confidence 356999999999999999999999999999999999999998863
No 14
>PLN03212 Transcription repressor MYB5; Provisional
Probab=94.87 E-value=0.037 Score=61.17 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=40.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHh-cchHHHHHHHHh
Q 001101 42 MLGPQWSKEELERFYEAYRKYGK-DWKKIAAAVR-NRTAEMVEALFT 86 (1158)
Q Consensus 42 ~l~~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v~-tRt~~~v~s~y~ 86 (1158)
+-++.||.||=++-+++..+||. +|+.||..++ +||..|.|..|.
T Consensus 23 lKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~ 69 (249)
T PLN03212 23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWM 69 (249)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHH
Confidence 34678999999999999999995 8999999996 899999999865
No 15
>PLN03091 hypothetical protein; Provisional
Probab=94.29 E-value=0.048 Score=64.27 Aligned_cols=42 Identities=24% Similarity=0.468 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHh-cchHHHHHHHH
Q 001101 44 GPQWSKEELERFYEAYRKYGK-DWKKIAAAVR-NRTAEMVEALF 85 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v~-tRt~~~v~s~y 85 (1158)
.+.||.||=++.++++.+||. +|++||..++ +||..|.|..|
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW 57 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRW 57 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHH
Confidence 358999999999999999997 8999999997 89999999886
No 16
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=92.63 E-value=0.55 Score=54.61 Aligned_cols=50 Identities=30% Similarity=0.468 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHHcCCChHHHH-HHHhcchHHHHHHHHhhhhhhcccCcccc
Q 001101 46 QWSKEELERFYEAYRKYGKDWKKIA-AAVRNRTAEMVEALFTMNRAYLSLPEGTA 99 (1158)
Q Consensus 46 ~Ws~eEh~rF~ea~r~~Gk~Wkkva-~~v~tRt~~~v~s~y~~~k~~l~lpeg~a 99 (1158)
-||++|-..|-++|+.||||+--|- .-|+||||...-..|.+- |+-||.-
T Consensus 279 ~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlW----KkSeryd 329 (445)
T KOG4329|consen 279 GWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLW----KKSERYD 329 (445)
T ss_pred cCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHh----hcCcchh
Confidence 5999999999999999999999985 579999999987777654 4555543
No 17
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=92.50 E-value=0.1 Score=63.19 Aligned_cols=47 Identities=32% Similarity=0.704 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCChHHH----------HHHHhcchHHHHHHHHh-----hhhhh
Q 001101 45 PQWSKEELERFYEAYRKYGKDWKKI----------AAAVRNRTAEMVEALFT-----MNRAY 91 (1158)
Q Consensus 45 ~~Ws~eEh~rF~ea~r~~Gk~Wkkv----------a~~v~tRt~~~v~s~y~-----~~k~~ 91 (1158)
--||-.|-+-|++||+.||||+.+| -.-|+-+|.+|||.+|. |+|+-
T Consensus 89 taWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~~ 150 (782)
T KOG4468|consen 89 TAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKLL 150 (782)
T ss_pred cccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhhh
Confidence 3799999999999999999999999 34456789999998875 55554
No 18
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=92.24 E-value=0.17 Score=58.76 Aligned_cols=42 Identities=36% Similarity=0.707 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHh
Q 001101 45 PQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFT 86 (1158)
Q Consensus 45 ~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~ 86 (1158)
.+||++|.++||.||-.+|-|+--|+...-+|.-.||.+-|-
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi 407 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFI 407 (507)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHH
Confidence 399999999999999999999999999999999999998763
No 19
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=0.097 Score=59.07 Aligned_cols=52 Identities=12% Similarity=0.065 Sum_probs=48.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhhhhhcccCc
Q 001101 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPE 96 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~~k~~l~lpe 96 (1158)
..++||.++|++|++++..|+..|.++..+++.++..+++++ .+++|.++.-
T Consensus 52 ~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~p~~~~ 103 (335)
T KOG0724|consen 52 DEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRES--GQKPFPKYGK 103 (335)
T ss_pred cccccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhc--cCCCccccCc
Confidence 566799999999999999998899999999999999999887 8999999963
No 20
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=90.91 E-value=0.3 Score=55.76 Aligned_cols=50 Identities=20% Similarity=0.415 Sum_probs=44.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHhcchHHHHHHHHhhhhhhc
Q 001101 41 DMLGPQWSKEELERFYEAYRKYGK-DWKKIAAAVRNRTAEMVEALFTMNRAYL 92 (1158)
Q Consensus 41 ~~l~~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v~tRt~~~v~s~y~~~k~~l 92 (1158)
..+.+-|+.+|--.|++++...|- +|.-||.+||.|+.+.|++||- |+|+
T Consensus 60 pI~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~Hyl--K~y~ 110 (432)
T COG5114 60 PIGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYL--KMYD 110 (432)
T ss_pred cccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHH--HHHh
Confidence 456789999999999999999998 8999999999999999999964 5565
No 21
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=89.22 E-value=0.86 Score=38.53 Aligned_cols=52 Identities=25% Similarity=0.318 Sum_probs=40.1
Q ss_pred CccCCCEEEEEcCCCCCcccceEEEEec-CeeEEEeccCCCceeEecccccccCC
Q 001101 717 PLYVGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDKRELGIEFVQDIDCMPLN 770 (1158)
Q Consensus 717 PL~VG~kV~A~hp~~r~l~~GtVlavd~-~~YrV~FdrpeLGv~~VpD~dvmp~~ 770 (1158)
++.+|+.|.|+. ....-|.|+|+.+++ ..|.|.|.-=| ..+.|+=.++.++.
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I~~~~~~~~~~V~f~D~G-~~~~v~~~~l~~l~ 54 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARIIKVDGEQLYEVFFIDYG-NEEVVPPSDLRPLP 54 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEEEEECCCCEEEEEEECCC-ccEEEeHHHeecCC
Confidence 578999999998 666789999999999 89999999522 23566555555443
No 22
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=86.87 E-value=0.89 Score=49.72 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhh--hhhccc
Q 001101 44 GPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMN--RAYLSL 94 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~~--k~~l~l 94 (1158)
++.||.||=+.-+++..+||-.|..||.++-.||--.|.-+.+.+ |-+.++
T Consensus 62 rg~fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~ 114 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHWNTHLKKKLLKM 114 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHHHHHHHHHHHHc
Confidence 679999999999999999999999999999999999999887654 444443
No 23
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=85.84 E-value=1.1 Score=45.41 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=35.3
Q ss_pred CccCCCEEEEEcCCCCCcccceEEEEec---CeeEEEeccCCC--ceeEecccccc
Q 001101 717 PLYVGQRIIAVHPRTREICDGSVLTVEH---SRYRVQFDKREL--GIEFVQDIDCM 767 (1158)
Q Consensus 717 PL~VG~kV~A~hp~~r~l~~GtVlavd~---~~YrV~FdrpeL--Gv~~VpD~dvm 767 (1158)
-|+.|++|+|+.|.|-.+|.++|.+.-. ..|+++|+-.+- |.+.|+---|+
T Consensus 71 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~~~~~V~~r~Vv 126 (130)
T PF07039_consen 71 EFPKGTKVLALYPDTTCFYPATVVSPPKKKSGEYKLKFEDDEDADGYREVPQRYVV 126 (130)
T ss_dssp S--TT-EEEEE-TTSSEEEEEEEEEE-SSTTS-EEEEECTTTSTTSBEEE-GGGEE
T ss_pred hCCCCCEEEEECCCCceEEEEEEEeCCCCCCCcEEEEEeCCCCcCCcEEEccceEE
Confidence 5799999999999999999999999933 689999997553 33666655443
No 24
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=84.83 E-value=3 Score=37.28 Aligned_cols=38 Identities=24% Similarity=0.551 Sum_probs=31.2
Q ss_pred CCccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEecc
Q 001101 716 RPLYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDK 753 (1158)
Q Consensus 716 ~PL~VG~kV~A~hp~~r~l~~GtVlavd~--~~YrV~Fdr 753 (1158)
+-+..|.+|.++-|....-|.|.|+++|. ..|.|+|+-
T Consensus 4 ~k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~D 43 (55)
T PF09465_consen 4 RKFAIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYED 43 (55)
T ss_dssp SSS-SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETT
T ss_pred ccccCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcC
Confidence 56789999999999998889999999999 689999995
No 25
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=83.88 E-value=1.7 Score=43.67 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=39.8
Q ss_pred CCEEEEEcCCCCCcccceEEEEe-cCeeEEEeccCCCceeEecccccccCCCC
Q 001101 721 GQRIIAVHPRTREICDGSVLTVE-HSRYRVQFDKRELGIEFVQDIDCMPLNPL 772 (1158)
Q Consensus 721 G~kV~A~hp~~r~l~~GtVlavd-~~~YrV~FdrpeLGv~~VpD~dvmp~~pl 772 (1158)
||+|+||.......|.|+|...- ...|.|.|+. .....|+..++++...-
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~~~~~~lV~f~~--~~~~~v~~~~iI~~~~~ 51 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCVSSGQFLVEFDD--GDTQEVPISDIIALSDA 51 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEccCCCEEEEEECC--CCEEEeChHHeEEccCc
Confidence 89999999888888999999864 4799999953 45677787788766543
No 26
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=81.96 E-value=1.8 Score=51.62 Aligned_cols=65 Identities=20% Similarity=0.350 Sum_probs=49.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhhhhhcccCcccccccceeeeeeccccccCC
Q 001101 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGILAG 117 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~~k~~l~lpeg~as~~gliammtdhy~~l~~ 117 (1158)
+--.||.||+-+|-.||..|||++.||-+.+-.|+..-+.-.|.--|--++ -..||.-|-+-+..
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~----------~~s~~~~h~~~~~~ 250 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTRE----------YDSQMNRHRNETKT 250 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhh----------HHHHHHHHHhhhhh
Confidence 445999999999999999999999999999999999888877654432222 22356666665543
No 27
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=80.77 E-value=4 Score=35.34 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=33.4
Q ss_pred CccCCCEEEEEcCCCCCcccceEEEEec-CeeEEEecc
Q 001101 717 PLYVGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDK 753 (1158)
Q Consensus 717 PL~VG~kV~A~hp~~r~l~~GtVlavd~-~~YrV~Fdr 753 (1158)
-|.+|+.|-|+.+...+-|.|+|+.+.. +.|.|.|..
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~~~~~~V~~~~ 39 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVLGDGKYLVRYLT 39 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECC
Confidence 4789999999987767889999999999 889999986
No 28
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=80.20 E-value=1.9 Score=43.38 Aligned_cols=53 Identities=21% Similarity=0.322 Sum_probs=41.1
Q ss_pred CCCccCCCEEEEEcCCCC-CcccceEEE------EecCeeEEEeccCCCceeEecccccccC
Q 001101 715 ARPLYVGQRIIAVHPRTR-EICDGSVLT------VEHSRYRVQFDKRELGIEFVQDIDCMPL 769 (1158)
Q Consensus 715 P~PL~VG~kV~A~hp~~r-~l~~GtVla------vd~~~YrV~FdrpeLGv~~VpD~dvmp~ 769 (1158)
..||.+|++|+|.++..+ .-..|+|++ .....|.|.|-... ...||.-+|+.+
T Consensus 53 ~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f~ng~--~~~vp~~~~~~I 112 (124)
T PF15057_consen 53 RHSLQVGDKVLAPWEPDDCRYGPGTVIAGPERRASEDKEYTVRFYNGK--TAKVPRGEVIWI 112 (124)
T ss_pred cCcCCCCCEEEEecCcCCCEEeCEEEEECccccccCCceEEEEEECCC--CCccchhhEEEC
Confidence 669999999999997655 456799995 34479999998733 577887777644
No 29
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=78.98 E-value=2.2 Score=52.86 Aligned_cols=48 Identities=27% Similarity=0.433 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHhcchHHHHHHHHhhhhh
Q 001101 43 LGPQWSKEELERFYEAYRKYGK-DWKKIAAAVRNRTAEMVEALFTMNRA 90 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v~tRt~~~v~s~y~~~k~ 90 (1158)
..|+||.+|-...+.|..+||- ||-||-..|-+||-.|.|..|+--=+
T Consensus 359 khg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~ 407 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLN 407 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHH
Confidence 3579999999999999999987 99999999999999999999875433
No 30
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=73.14 E-value=4.4 Score=37.01 Aligned_cols=53 Identities=26% Similarity=0.604 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHH------cC--------CChHHHHHHHh----cchHHHHHHHH-hhhhhhcccCcc
Q 001101 45 PQWSKEELERFYEAYRK------YG--------KDWKKIAAAVR----NRTAEMVEALF-TMNRAYLSLPEG 97 (1158)
Q Consensus 45 ~~Ws~eEh~rF~ea~r~------~G--------k~Wkkva~~v~----tRt~~~v~s~y-~~~k~~l~lpeg 97 (1158)
..||.+|...|++.+.. |+ .-|+.||..+. .||..|++.-+ ++-+.|-++=+.
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~ 73 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDR 73 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 57999999999998877 32 15999999997 89999998865 355667666443
No 31
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=71.46 E-value=4.6 Score=44.28 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHh-cchHHHHHHHHh
Q 001101 44 GPQWSKEELERFYEAYRKYGK-DWKKIAAAVR-NRTAEMVEALFT 86 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v~-tRt~~~v~s~y~ 86 (1158)
.|.||.||=+...+-+++||. .|..|+...+ .|+.-+.|=.++
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~ 53 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWT 53 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhh
Confidence 689999999999999999999 6999999999 887766665433
No 32
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=71.19 E-value=8 Score=48.77 Aligned_cols=85 Identities=21% Similarity=0.329 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhhhhhcccCcccccccceeeeeeccccccCC-------C
Q 001101 46 QWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGILAG-------S 118 (1158)
Q Consensus 46 ~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~~k~~l~lpeg~as~~gliammtdhy~~l~~-------s 118 (1158)
.||-.|...|-+||-.|-||+-+|+-.|.++||.|--..|..-|- ||-|-|-+|+. -
T Consensus 621 ~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWKK----------------~~~~~~~~~~dc~r~~~le 684 (907)
T KOG4167|consen 621 KWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWKK----------------IMRLGRKIIDDCVRSEELE 684 (907)
T ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHHH----------------hccchhhhHhhhhhhhHHH
Confidence 799999999999999999999999999999999997777665553 56666666632 1
Q ss_pred CCCccccccccCccccccccCCccCCCC
Q 001101 119 DGEQESDEATGSSQKSQKCAGGKFQNPP 146 (1158)
Q Consensus 119 ~S~~es~~~~~~~~k~~kr~~~~~~~~~ 146 (1158)
+=+.+.|+.++--+|+.|+...++-.+.
T Consensus 685 ~~~~~e~~~pEe~~~~~k~~e~evp~Sp 712 (907)
T KOG4167|consen 685 ELEEEEEEDPEEDRKSTKEEESEVPKSP 712 (907)
T ss_pred HHHHhhccCcccccccchhhhhcCCCCC
Confidence 2224566677777888888766554443
No 33
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=67.81 E-value=6.3 Score=47.39 Aligned_cols=45 Identities=29% Similarity=0.506 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHcCCChHHHHH-HHhcchHHHHHHHHhhhhh
Q 001101 46 QWSKEELERFYEAYRKYGKDWKKIAA-AVRNRTAEMVEALFTMNRA 90 (1158)
Q Consensus 46 ~Ws~eEh~rF~ea~r~~Gk~Wkkva~-~v~tRt~~~v~s~y~~~k~ 90 (1158)
-||.-|...|-|||.+||||+..|-+ ++-=+|..-|-..|.|-|+
T Consensus 287 EWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sIveyYYmwKt 332 (693)
T KOG3554|consen 287 EWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSIVEYYYMWKT 332 (693)
T ss_pred hccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHHHHHHHHHhh
Confidence 69999999999999999999887754 4556777777677777654
No 34
>PLN03162 golden-2 like transcription factor; Provisional
Probab=66.79 E-value=14 Score=43.69 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=40.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC---ChHHHHHHHh--cchHHHHHHHHhhhhhhcc
Q 001101 43 LGPQWSKEELERFYEAYRKYGK---DWKKIAAAVR--NRTAEMVEALFTMNRAYLS 93 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk---~Wkkva~~v~--tRt~~~v~s~y~~~k~~l~ 93 (1158)
.+=+||.|=|++|++|+..-|- -=|+|-..++ .=|..+|.||--+-|.|++
T Consensus 236 pRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk 291 (526)
T PLN03162 236 AKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRR 291 (526)
T ss_pred CcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence 3448999999999999999994 3678888776 6688999999555555554
No 35
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=65.95 E-value=6 Score=49.27 Aligned_cols=51 Identities=24% Similarity=0.411 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHhcchHHHHHH---HHhhhhhhccc
Q 001101 44 GPQWSKEELERFYEAYRKYGK-DWKKIAAAVRNRTAEMVEA---LFTMNRAYLSL 94 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v~tRt~~~v~s---~y~~~k~~l~l 94 (1158)
.++||=-|-++.+++..+||+ .|-|+|-++++||..|.++ .+-.+|-||+-
T Consensus 412 ~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~rl~~ 466 (939)
T KOG0049|consen 412 VERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAKLRLAA 466 (939)
T ss_pred cCceeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHHHHHHhc
Confidence 369999999999999999999 8999999999999977643 44567777754
No 36
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=62.57 E-value=15 Score=37.63 Aligned_cols=50 Identities=28% Similarity=0.458 Sum_probs=34.4
Q ss_pred CCCEEEEEcCCCCCcccceEEEEec-CeeEEEeccCCCcee-EecccccccCCCC
Q 001101 720 VGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDKRELGIE-FVQDIDCMPLNPL 772 (1158)
Q Consensus 720 VG~kV~A~hp~~r~l~~GtVlavd~-~~YrV~FdrpeLGv~-~VpD~dvmp~~pl 772 (1158)
||-+|+|+--.....|.|+|..-.. +.|+|.||- |.+ .|.--|++..+|+
T Consensus 5 iG~rV~AkWS~n~yyY~G~I~~~~~~~kykv~FdD---G~~~~v~~~div~~dpl 56 (122)
T PF09038_consen 5 IGLRVFAKWSDNGYYYPGKITSDKGKNKYKVLFDD---GYECRVLGKDIVVCDPL 56 (122)
T ss_dssp TT-EEEEESSTTSEEEEEEEEEEETTTEEEEEETT---S-EEEEECCCEEEESSS
T ss_pred cccEEEEEEccCCcccCceEeecCCCCeEEEEecC---CccceeccCcEEEEcce
Confidence 8999999866444568999998545 799999996 653 4555555544443
No 37
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=58.33 E-value=19 Score=40.56 Aligned_cols=55 Identities=20% Similarity=0.229 Sum_probs=39.1
Q ss_pred CCccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEeccCCCc-eeEecccccccCCCC
Q 001101 716 RPLYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDKRELG-IEFVQDIDCMPLNPL 772 (1158)
Q Consensus 716 ~PL~VG~kV~A~hp~~r~l~~GtVlavd~--~~YrV~FdrpeLG-v~~VpD~dvmp~~pl 772 (1158)
.-+.||++..|+.-....+|.++|.+|+. .+|.|+|+- -| .+.|.=.|++|...-
T Consensus 67 ~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~g--Ygn~e~v~l~dL~~~~~~ 124 (264)
T PF06003_consen 67 KKWKVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTG--YGNEEEVNLSDLKPSEGD 124 (264)
T ss_dssp T---TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETT--TTEEEEEEGGGEEETT--
T ss_pred cCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcc--cCCeEeeehhhhcccccc
Confidence 47899999999987777889999999998 489999994 44 466676777766544
No 38
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=58.14 E-value=11 Score=49.82 Aligned_cols=55 Identities=31% Similarity=0.540 Sum_probs=45.7
Q ss_pred ccccccccCCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHhcchHHHHHHHHhhhhhhc
Q 001101 35 RKRKLSDMLGPQWSKEELERFYEAYRKYGK-DWKKIAAAVRNRTAEMVEALFTMNRAYL 92 (1158)
Q Consensus 35 rk~k~~~~l~~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v~tRt~~~v~s~y~~~k~~l 92 (1158)
.|.+|..--=+-|++-+...|+.|..+||| +-.+||..|.++|.+.|+.- .++|.
T Consensus 815 ~k~~l~~~gf~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y---~~~f~ 870 (1033)
T PLN03142 815 EKEQLLEEGFSTWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERY---AKVFW 870 (1033)
T ss_pred HHHHHHhcCcCcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHH---HHHHH
Confidence 345555545567999999999999999999 79999999999999999984 45555
No 39
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=58.02 E-value=12 Score=32.51 Aligned_cols=34 Identities=15% Similarity=0.478 Sum_probs=27.9
Q ss_pred ccCCCEEEEEcCCCCCcccceEEEEecC----eeEEEec
Q 001101 718 LYVGQRIIAVHPRTREICDGSVLTVEHS----RYRVQFD 752 (1158)
Q Consensus 718 L~VG~kV~A~hp~~r~l~~GtVlavd~~----~YrV~Fd 752 (1158)
|.||++|.+.+ .....|.++|+.+... .|.|.|.
T Consensus 1 ~~vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~ 38 (55)
T PF11717_consen 1 FEVGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQ 38 (55)
T ss_dssp --TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEET
T ss_pred CCcCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcC
Confidence 67999999998 5567899999999883 5999997
No 40
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=56.36 E-value=22 Score=29.08 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=29.1
Q ss_pred CCEEEEEcCCCCCcccceEEEEec-CeeEEEecc
Q 001101 721 GQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDK 753 (1158)
Q Consensus 721 G~kV~A~hp~~r~l~~GtVlavd~-~~YrV~Fdr 753 (1158)
|+.|.|+.+.....|.|+|+.+.+ ..|.|.|.-
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~~~~~~V~f~D 34 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILSDGKVEVFFVD 34 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECCCCcEEEEEEc
Confidence 788999988777889999999995 789999984
No 41
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=50.56 E-value=16 Score=45.53 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=40.5
Q ss_pred ccccccccCCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHH
Q 001101 35 RKRKLSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEAL 84 (1158)
Q Consensus 35 rk~k~~~~l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~ 84 (1158)
|+.++-+--+|.||+||.+....--..+|.+|+.|+..+|.+. ..++..
T Consensus 375 R~y~~FE~~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~lgr~P-~~crd~ 423 (607)
T KOG0051|consen 375 RAYTPFENKRGKWTPEEEEELKKLVVEHGNDWKEIGKALGRMP-MDCRDR 423 (607)
T ss_pred hcCCccccccCCCCcchHHHHHHHHHHhcccHHHHHHHHccCc-HHHHHH
Confidence 6777777567899999999999999999999999999998554 344443
No 42
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=47.85 E-value=64 Score=31.37 Aligned_cols=60 Identities=28% Similarity=0.404 Sum_probs=42.4
Q ss_pred cccCCCccCCCEEEEEcCC-CCCcccceEEEEecCeeEEEeccCCCceeEeccc---ccccCCC
Q 001101 712 TDLARPLYVGQRIIAVHPR-TREICDGSVLTVEHSRYRVQFDKRELGIEFVQDI---DCMPLNP 771 (1158)
Q Consensus 712 ~dIP~PL~VG~kV~A~hp~-~r~l~~GtVlavd~~~YrV~FdrpeLGv~~VpD~---dvmp~~p 771 (1158)
......|.||+|+-|+.+. ...++-.+|..|.....+|.||--+=...+.-|+ +|.|+.+
T Consensus 22 ~~~~~~F~vGmkLEavD~~~~~~i~vAtV~~v~g~~l~v~~dg~~~~~D~W~~~~S~~I~PvGw 85 (96)
T smart00561 22 DSPPNGFKVGMKLEAVDPRNPSLICVATVVEVKGYRLLLHFDGWDDKYDFWCDADSPDIHPVGW 85 (96)
T ss_pred CCccCcccCCCEEEEECCCCCceEEEEEEEEEECCEEEEEEccCCCcCCEEEECCCCCcccCch
Confidence 3345579999999999876 4578999999999889999999533222333333 3444444
No 43
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=44.28 E-value=21 Score=40.49 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=30.7
Q ss_pred CCccCCCEEEEEcCCCCCcccceEEEEec---CeeEEEec
Q 001101 716 RPLYVGQRIIAVHPRTREICDGSVLTVEH---SRYRVQFD 752 (1158)
Q Consensus 716 ~PL~VG~kV~A~hp~~r~l~~GtVlavd~---~~YrV~Fd 752 (1158)
++|+.|+.|.|+.|.|-.+|.|.|.+.-. +.|.|-|.
T Consensus 197 ~~fpp~~~VLA~YP~TTcFY~aiVh~tp~d~s~~y~vlff 236 (264)
T KOG3038|consen 197 ALFPPGTIVLAVYPGTTCFYKAIVHSTPRDGSCDYYVLFF 236 (264)
T ss_pred cCCCCCCEEEEEcCCcceeeeeEeecCCCCCCCcceeeee
Confidence 47899999999999999999999998766 34555554
No 44
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=42.72 E-value=53 Score=29.72 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHc-----C------------CChHHHHHHHh-----cchHHHHHHHHhhhhhh
Q 001101 44 GPQWSKEELERFYEAYRKY-----G------------KDWKKIAAAVR-----NRTAEMVEALFTMNRAY 91 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~-----G------------k~Wkkva~~v~-----tRt~~~v~s~y~~~k~~ 91 (1158)
.++||.+|.+-+++-+..| | +-|..|++.+. .||+.|++.-|.--|..
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK 71 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999988877 4 25999999885 89999999888765544
No 45
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=40.90 E-value=17 Score=45.11 Aligned_cols=45 Identities=27% Similarity=0.446 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhh
Q 001101 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
...+|+..|-+.||.|+..+|-+..-|++.-..|+..||+.=|.+
T Consensus 408 ~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKK 452 (584)
T ss_pred ccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhh
Confidence 445999999999999999999999999999999999999998765
No 46
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=37.68 E-value=30 Score=33.86 Aligned_cols=24 Identities=21% Similarity=0.623 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHh
Q 001101 48 SKEELERFYEAYRKYGKDWKKIAAAVR 74 (1158)
Q Consensus 48 s~eEh~rF~ea~r~~Gk~Wkkva~~v~ 74 (1158)
|.++++.|-+-+ ||+||+++..++
T Consensus 1 ~~~~~q~~~~nv---Gr~WK~laR~Lg 24 (90)
T cd08780 1 TPADQQHFAKSV---GKKWKPVGRSLQ 24 (90)
T ss_pred CHHHHHHHHHHH---hHHHHHHHHHHc
Confidence 567888888765 899999999999
No 47
>KOG4485 consensus Uncharacterized conserved protein, contains ankyrin and FN3 repeats [General function prediction only]
Probab=35.35 E-value=18 Score=43.85 Aligned_cols=39 Identities=33% Similarity=0.458 Sum_probs=30.1
Q ss_pred CCCCccchhhHHHHHhhcCCCCCC------------cHHHHHHHHHHHHHH
Q 001101 653 SHVPRLTRVEWGVIRSSLGRPRRF------------SEQFLKEEKEKLNQY 691 (1158)
Q Consensus 653 ~~~~rLtR~EW~~IRr~mGKPRRf------------S~aFl~EER~kLE~~ 691 (1158)
..-+.+|+-||..|.|.---|=|+ |.+|+.-|-++|-.+
T Consensus 257 RdN~HiTaEEWevihr~d~dplrlpldfsaqggdgas~a~aaTeaQ~lf~~ 307 (724)
T KOG4485|consen 257 RDNPHITAEEWEVIHRIDMDPLRLPLDFSAQGGDGASEAFAATEAQELFHS 307 (724)
T ss_pred cCCCccCHHHHHHHHHhcCCcccCcccccccCCCccccchhhHHHHHHHHH
Confidence 334679999999999977676665 478999888877544
No 48
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=31.71 E-value=50 Score=40.77 Aligned_cols=40 Identities=28% Similarity=0.510 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHh
Q 001101 46 QWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFT 86 (1158)
Q Consensus 46 ~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~ 86 (1158)
-||.||-++.|.+.+++.-.|.-|+..|+ ||..|-.-.|.
T Consensus 61 ews~eederlLhlakl~p~qwrtIa~i~g-r~~~qc~eRy~ 100 (617)
T KOG0050|consen 61 EWSREEDERLLHLAKLEPTQWRTIADIMG-RTSQQCLERYN 100 (617)
T ss_pred hhhhhHHHHHHHHHHhcCCccchHHHHhh-hhHHHHHHHHH
Confidence 69999999999999999999999999997 78888776653
No 49
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=29.74 E-value=32 Score=39.82 Aligned_cols=39 Identities=46% Similarity=0.876 Sum_probs=26.9
Q ss_pred HHHcCCChHHHHHHHhcchHHHHHHHHhhhhhhcccCcccccccceeee---eeccccccCCCCC
Q 001101 59 YRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTASVVGLIAM---MTDHYGILAGSDG 120 (1158)
Q Consensus 59 ~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~~k~~l~lpeg~as~~gliam---mtdhy~~l~~s~S 120 (1158)
|++|||.|| |+||.. ++|+|| ++.=| |-+|+.++-.|.|
T Consensus 187 Y~kyGKh~~--------------EalFyt--H~LsLP-------~Flf~~~div~~~~~~~~se~ 228 (330)
T KOG1583|consen 187 YQKYGKHWK--------------EALFYT--HFLSLP-------LFLFMGDDIVSHWRLAFKSES 228 (330)
T ss_pred HHHhcCChH--------------HHHHHH--HHhccc-------hHHHhcchHHHHHHHHhcCcc
Confidence 799999998 567654 489999 33333 4568887755543
No 50
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=29.42 E-value=1.1e+02 Score=29.16 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhCCCCChhHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHHhc
Q 001101 1093 HCVAALFMIQRCTERDFPPADVALVLDSAVTSLQPCCSQNLPVYAEIQKCMGIIRNQILAL 1153 (1158)
Q Consensus 1093 sCVATLLmIQ~CTErq~pPAdVAqvLDsAvtsLrP~csqNlpIY~eIq~cmg~IKnQIlal 1153 (1158)
..|..|..|+.+.+..+|.++|+.+|+..- ..+..-++..+..|..||-.|
T Consensus 42 ~~l~~l~~I~~lr~~G~~l~eI~~~l~~~~----------~~~~~~l~~~~~~l~~~i~~l 92 (96)
T cd04788 42 ADIRRLHQIIALRRLGFSLREIGRALDGPD----------FDPLELLRRQLARLEEQLELA 92 (96)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHhCCC----------hhHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999998521 156677888888888888554
No 51
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=27.02 E-value=54 Score=37.08 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=34.1
Q ss_pred CccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEeccCC
Q 001101 717 PLYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDKRE 755 (1158)
Q Consensus 717 PL~VG~kV~A~hp~~r~l~~GtVlavd~--~~YrV~Fdrpe 755 (1158)
-+.||+||+|.++..+.+|+.+|..+.+ .+--|.|+--+
T Consensus 90 ~w~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f~s~~ 130 (262)
T KOG3026|consen 90 GWKVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIFASYG 130 (262)
T ss_pred ccccCCEEEEeecCCCceEEeehhhccCCCCceeEEEeecc
Confidence 4799999999999999999999999998 57888888643
No 52
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=26.98 E-value=27 Score=34.69 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=24.9
Q ss_pred CCCccchhhHHHHHhhcCCCCCCcHHHHH
Q 001101 654 HVPRLTRVEWGVIRSSLGRPRRFSEQFLK 682 (1158)
Q Consensus 654 ~~~rLtR~EW~~IRr~mGKPRRfS~aFl~ 682 (1158)
+=..|.+.||..||+.|-++++|...||.
T Consensus 67 ~d~~L~~~El~~l~~~l~~~e~C~~~F~~ 95 (113)
T PF10591_consen 67 KDGVLDRSELKPLRRPLMPPEHCARPFFR 95 (113)
T ss_dssp -SSEE-TTTTGGGGSTTSTTGGGHHHHHH
T ss_pred CCCccCHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44579999999999999999999999985
No 53
>cd00592 HTH_MerR-like Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.79 E-value=1.7e+02 Score=27.55 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhCCCCChhHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHHhc
Q 001101 1092 AHCVAALFMIQRCTERDFPPADVALVLDSAVTSLQPCCSQNLPVYAEIQKCMGIIRNQILAL 1153 (1158)
Q Consensus 1092 tsCVATLLmIQ~CTErq~pPAdVAqvLDsAvtsLrP~csqNlpIY~eIq~cmg~IKnQIlal 1153 (1158)
-.+|..+..|+.+....+|.++|+.+|+. .-++.+ .-.++.-++.++..|++||=.|
T Consensus 40 ~~dv~~l~~i~~l~~~g~~~~~i~~~l~~---~~~~~~--~~~~~~~~~~~~~~l~~~~~~l 96 (100)
T cd00592 40 EEDLERLRLIRRLRELGLSLKEIRELLDA---RDEELS--LAALLALLDEKLAELEEKIARL 96 (100)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHhc---ccccch--HHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999999999999974 233333 4557888899999999888554
No 54
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=22.92 E-value=2.2e+02 Score=26.42 Aligned_cols=44 Identities=16% Similarity=0.357 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHHc----CC---------ChHHHHHHHh-----cchHHHHHHHHhhhh
Q 001101 46 QWSKEELERFYEAYRKY----GK---------DWKKIAAAVR-----NRTAEMVEALFTMNR 89 (1158)
Q Consensus 46 ~Ws~eEh~rF~ea~r~~----Gk---------~Wkkva~~v~-----tRt~~~v~s~y~~~k 89 (1158)
+||.++.+-|++.|... .+ .|..|+..+. ..|..||+..|..-|
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk 62 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLK 62 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence 59999999998888443 33 3888888887 557889998877554
No 55
>KOG0888 consensus Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=22.52 E-value=1.9e+02 Score=31.02 Aligned_cols=81 Identities=22% Similarity=0.272 Sum_probs=48.5
Q ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCC-hHHHHHHHh-----------cchHHHHHHHHhhhhhhcc---cCccccc
Q 001101 36 KRKLSDMLGPQWSKEELERFYEAYRKYGKD-WKKIAAAVR-----------NRTAEMVEALFTMNRAYLS---LPEGTAS 100 (1158)
Q Consensus 36 k~k~~~~l~~~Ws~eEh~rF~ea~r~~Gk~-Wkkva~~v~-----------tRt~~~v~s~y~~~k~~l~---lpeg~as 100 (1158)
+.++..+--=+|+++++++||.-++ +++ |..+-.++. .-.+...|+|+......-. .| .|
T Consensus 33 gf~i~~~k~~~~s~~~~e~~Y~~~~--~~~Ff~~Lv~~m~SGPvvamv~~g~~~V~~~r~llG~t~~~~a~~~~p---gs 107 (156)
T KOG0888|consen 33 GFKIVALKLVQLSKELLEEHYSDLK--SKPFFPGLVEYMSSGPVVAMVLEGDNVVQYWRALLGPTNPAAARAAAP---GS 107 (156)
T ss_pred CcchhhheeecCCHHHHHHHHHHhc--CCccHHHHHHHHhcCcceehhhcCCCHHHHHHHHhCCCCcccccccCC---CC
Confidence 4444443344899999999999987 885 888776665 2233344555443332222 11 12
Q ss_pred ccceeeeeeccccccCCCCCCc
Q 001101 101 VVGLIAMMTDHYGILAGSDGEQ 122 (1158)
Q Consensus 101 ~~gliammtdhy~~l~~s~S~~ 122 (1158)
-=|+.+ +.|+-|++.||||..
T Consensus 108 ir~~f~-~~~~rn~~HgSDs~~ 128 (156)
T KOG0888|consen 108 IRGDFG-VDDGRNSIHGSDSVE 128 (156)
T ss_pred eeeeec-ccCCCCccccCCcHH
Confidence 334444 455559999999864
No 56
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=22.51 E-value=93 Score=38.63 Aligned_cols=45 Identities=33% Similarity=0.583 Sum_probs=40.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHhcchHHHHHHHHh
Q 001101 42 MLGPQWSKEELERFYEAYRKYGK-DWKKIAAAVRNRTAEMVEALFT 86 (1158)
Q Consensus 42 ~l~~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v~tRt~~~v~s~y~ 86 (1158)
.-|+-|+.-|-+=.--|..+||+ .|.+|+..+..+|..|-++-|.
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~ 50 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWE 50 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHH
Confidence 35789998888888899999999 6999999999999999988765
No 57
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=22.23 E-value=1e+02 Score=36.96 Aligned_cols=43 Identities=26% Similarity=0.284 Sum_probs=34.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCC----------------hHHHHHHHh-----cchHHHHHHHH
Q 001101 43 LGPQWSKEELERFYEAYRKYGKD----------------WKKIAAAVR-----NRTAEMVEALF 85 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk~----------------Wkkva~~v~-----tRt~~~v~s~y 85 (1158)
.-|-||.+=-+.|.|||++|..- =.-||..+. |||.-||-||-
T Consensus 75 aegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHI 138 (455)
T KOG3841|consen 75 AEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHI 138 (455)
T ss_pred cccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 56799999999999999986431 145777776 89999998873
No 58
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=21.79 E-value=35 Score=40.09 Aligned_cols=27 Identities=33% Similarity=0.731 Sum_probs=23.7
Q ss_pred CccchhhHHHHHhhc---CCCCCCcHHHHH
Q 001101 656 PRLTRVEWGVIRSSL---GRPRRFSEQFLK 682 (1158)
Q Consensus 656 ~rLtR~EW~~IRr~m---GKPRRfS~aFl~ 682 (1158)
..+.|.||.-+|+.+ -|||+|+..||.
T Consensus 348 n~i~rrEwKpFK~~l~k~s~~rkC~rk~~~ 377 (421)
T KOG4578|consen 348 NDIERREWKPFKRVLLKKSKPRKCSRKFFK 377 (421)
T ss_pred CccchhhcchHHHHHHhhccHHHHhhhcch
Confidence 458899999999977 589999999985
No 59
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=20.73 E-value=1.6e+02 Score=28.26 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=31.5
Q ss_pred cCCCccCCCEEEEEcCCCCCcccceEEEEecCeeEEEec
Q 001101 714 LARPLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFD 752 (1158)
Q Consensus 714 IP~PL~VG~kV~A~hp~~r~l~~GtVlavd~~~YrV~Fd 752 (1158)
+-+++.+|++|..+--+.+| ..|.|+.|++..++|.-+
T Consensus 5 ~~~~I~~GD~V~Vi~G~dKG-K~G~V~~V~~~~~~V~Ve 42 (83)
T CHL00141 5 KKMHVKIGDTVKIISGSDKG-KIGEVLKIIKKSNKVIVK 42 (83)
T ss_pred eeCcccCCCEEEEeEcCCCC-cEEEEEEEEcCCCEEEEc
Confidence 44689999999998766666 459999999998888776
No 60
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=20.24 E-value=2.3e+02 Score=32.31 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=39.3
Q ss_pred HHHHhhhHHHHHhccCC--CC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001101 884 SELRCMNDEILENQKDG--DN-SFKDSELFKKHYAAILLQLNDINEQVASALFCLRQR 938 (1158)
Q Consensus 884 ~eLr~MN~EAE~~~~~G--~~-s~~~se~FQrrYA~vVlqLe~vN~~l~~aL~~LRqr 938 (1158)
.+++-+|...|+..... .. .-..+.+||.+|++-.=.|++--++|+..|..||+-
T Consensus 186 ~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e 243 (289)
T COG4985 186 QQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRAE 243 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556677766542100 00 014578999999999999999999999999999974
No 61
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=20.08 E-value=2.5e+02 Score=25.36 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=25.2
Q ss_pred ccCCCEEEEEc--CCCCCc-ccceEEEEecC-eeEEEecc
Q 001101 718 LYVGQRIIAVH--PRTREI-CDGSVLTVEHS-RYRVQFDK 753 (1158)
Q Consensus 718 L~VG~kV~A~h--p~~r~l-~~GtVlavd~~-~YrV~Fdr 753 (1158)
|.+|++|-.+- ...++- |.|+|+....+ .|.|.|+-
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~~~~V~Y~~ 40 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGDDKYLVEYDD 40 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT-EEEEEETT
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCCcEEEEEECC
Confidence 57899998864 233444 89999999997 99999964
Done!