Query 001101
Match_columns 1158
No_of_seqs 139 out of 159
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 11:06:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yus_A SWI/SNF-related matrix- 99.1 5.5E-11 1.9E-15 107.5 6.8 57 30-86 4-60 (79)
2 2iw5_B Protein corest, REST co 98.9 6.9E-10 2.4E-14 117.1 6.7 61 34-94 123-183 (235)
3 2xag_B REST corepressor 1; ami 98.9 5.3E-10 1.8E-14 128.7 6.0 57 39-95 375-431 (482)
4 2eqr_A N-COR1, N-COR, nuclear 98.9 1.2E-09 4.1E-14 93.9 6.0 47 43-89 11-57 (61)
5 2yqk_A Arginine-glutamic acid 98.8 6.1E-09 2.1E-13 90.3 6.2 47 43-89 8-55 (63)
6 2cu7_A KIAA1915 protein; nucle 98.6 4.8E-08 1.6E-12 86.1 6.2 44 43-86 8-51 (72)
7 2yum_A ZZZ3 protein, zinc fing 98.5 1E-07 3.6E-12 84.2 5.7 50 43-94 7-62 (75)
8 2elk_A SPCC24B10.08C protein; 98.5 1.6E-07 5.6E-12 79.9 6.6 48 43-92 8-57 (58)
9 2crg_A Metastasis associated p 98.5 9.5E-08 3.3E-12 84.6 5.2 46 44-89 8-54 (70)
10 1x41_A Transcriptional adaptor 98.5 2.2E-07 7.6E-12 79.3 6.5 45 42-86 6-51 (60)
11 1wgx_A KIAA1903 protein; MYB D 98.4 2.4E-07 8.1E-12 83.2 6.0 51 44-100 8-62 (73)
12 2cqr_A RSGI RUH-043, DNAJ homo 98.3 3.3E-07 1.1E-11 82.0 4.1 49 39-87 13-65 (73)
13 4a69_C Nuclear receptor corepr 98.3 5.1E-07 1.7E-11 84.1 5.1 48 43-90 42-89 (94)
14 2ltp_A Nuclear receptor corepr 97.5 1.5E-07 5.2E-12 86.5 0.0 46 43-88 15-60 (89)
15 1guu_A C-MYB, MYB proto-oncoge 98.1 2.4E-06 8.1E-11 70.6 5.3 44 44-87 3-47 (52)
16 2d9a_A B-MYB, MYB-related prot 98.1 4.8E-06 1.6E-10 70.7 5.8 44 43-86 7-51 (60)
17 2cqq_A RSGI RUH-037, DNAJ homo 98.0 5.3E-06 1.8E-10 74.1 6.2 45 43-88 7-55 (72)
18 1gvd_A MYB proto-oncogene prot 98.0 3.5E-06 1.2E-10 69.7 4.7 43 44-86 3-46 (52)
19 2dim_A Cell division cycle 5-l 97.9 9.5E-06 3.2E-10 71.0 5.8 45 43-87 8-53 (70)
20 1irz_A ARR10-B; helix-turn-hel 97.9 1.3E-05 4.5E-10 70.5 5.8 50 43-94 6-60 (64)
21 2din_A Cell division cycle 5-l 97.9 1.7E-05 5.9E-10 68.6 6.4 43 44-87 9-51 (66)
22 2cjj_A Radialis; plant develop 97.9 1.2E-05 4.2E-10 75.0 5.4 45 44-88 8-56 (93)
23 1w0t_A Telomeric repeat bindin 97.9 1.6E-05 5.6E-10 66.1 5.5 44 44-87 2-48 (53)
24 3osg_A MYB21; transcription-DN 97.8 1.3E-05 4.3E-10 77.4 5.2 58 43-100 61-118 (126)
25 2k9n_A MYB24; R2R3 domain, DNA 97.7 4.3E-05 1.5E-09 71.7 6.2 45 44-88 53-97 (107)
26 4eef_G F-HB80.4, designed hema 97.7 3E-06 1E-10 76.2 -1.5 45 43-87 19-67 (74)
27 2llk_A Cyclin-D-binding MYB-li 97.7 5.1E-05 1.7E-09 68.0 6.3 44 43-87 22-65 (73)
28 1gv2_A C-MYB, MYB proto-oncoge 97.7 3.2E-05 1.1E-09 71.9 4.6 45 43-87 55-99 (105)
29 1ity_A TRF1; helix-turn-helix, 97.6 6.2E-05 2.1E-09 65.7 6.1 45 43-87 9-56 (69)
30 3osg_A MYB21; transcription-DN 97.6 5.8E-05 2E-09 72.8 5.0 44 43-86 10-53 (126)
31 3sjm_A Telomeric repeat-bindin 97.5 8.9E-05 3E-09 64.6 5.5 42 45-86 12-56 (64)
32 1gv2_A C-MYB, MYB proto-oncoge 97.5 7.8E-05 2.7E-09 69.3 4.8 46 42-87 2-48 (105)
33 1h8a_C AMV V-MYB, MYB transfor 97.5 6.7E-05 2.3E-09 72.2 4.4 45 43-87 78-122 (128)
34 2k9n_A MYB24; R2R3 domain, DNA 97.5 0.00011 3.9E-09 68.8 5.6 42 45-86 2-44 (107)
35 1h8a_C AMV V-MYB, MYB transfor 97.4 0.00018 6.3E-09 69.2 5.6 45 43-87 26-71 (128)
36 3zqc_A MYB3; transcription-DNA 97.3 0.00012 4.3E-09 70.8 4.4 45 43-87 53-97 (131)
37 1h89_C C-MYB, MYB proto-oncoge 97.2 0.00025 8.6E-09 70.4 4.6 45 43-87 109-153 (159)
38 3zqc_A MYB3; transcription-DNA 97.1 0.00018 6.3E-09 69.6 2.5 44 44-87 2-46 (131)
39 1x58_A Hypothetical protein 49 97.0 0.00043 1.5E-08 60.6 3.9 43 44-86 8-53 (62)
40 1h89_C C-MYB, MYB proto-oncoge 96.7 0.0012 4.1E-08 65.6 5.1 45 43-87 57-102 (159)
41 2ckx_A NGTRF1, telomere bindin 96.7 0.0019 6.4E-08 59.2 5.8 49 46-94 2-55 (83)
42 2xag_B REST corepressor 1; ami 96.3 0.00069 2.3E-08 78.7 0.0 47 44-90 189-235 (482)
43 2aje_A Telomere repeat-binding 96.0 0.0061 2.1E-07 58.2 5.1 52 43-94 12-68 (105)
44 2roh_A RTBP1, telomere binding 96.0 0.014 4.9E-07 57.0 7.6 47 43-89 30-81 (122)
45 2juh_A Telomere binding protei 95.9 0.01 3.4E-07 58.0 6.1 53 42-94 15-72 (121)
46 1ofc_X ISWI protein; nuclear p 94.4 0.022 7.6E-07 63.0 3.8 51 36-86 102-153 (304)
47 1ign_A Protein (RAP1); RAP1,ye 94.1 0.026 8.9E-07 60.7 3.5 47 41-87 5-57 (246)
48 3hm5_A DNA methyltransferase 1 93.5 0.082 2.8E-06 49.7 5.2 42 45-86 31-77 (93)
49 2equ_A PHD finger protein 20-l 92.4 0.22 7.6E-06 44.8 6.2 54 715-771 7-61 (74)
50 2qqr_A JMJC domain-containing 91.9 0.13 4.5E-06 50.1 4.4 38 715-753 3-41 (118)
51 2xdp_A Lysine-specific demethy 91.8 0.075 2.6E-06 52.2 2.7 58 714-772 3-65 (123)
52 4b4c_A Chromodomain-helicase-D 91.6 0.13 4.6E-06 52.7 4.5 43 45-87 8-55 (211)
53 4hcz_A PHD finger protein 1; p 90.7 0.29 1E-05 42.5 4.9 35 718-753 4-40 (58)
54 3p8d_A Medulloblastoma antigen 90.6 0.46 1.6E-05 42.3 6.2 55 714-771 3-58 (67)
55 3qii_A PHD finger protein 20; 90.1 0.48 1.6E-05 44.0 6.1 55 712-769 16-71 (85)
56 1mhn_A SurviVal motor neuron p 89.7 0.91 3.1E-05 38.5 7.1 52 717-770 3-57 (59)
57 4a4f_A SurviVal of motor neuro 88.8 1.2 4.1E-05 38.5 7.4 54 715-770 6-62 (64)
58 2ldm_A Uncharacterized protein 88.5 0.08 2.7E-06 48.6 0.0 53 714-769 3-56 (81)
59 3mea_A SAGA-associated factor 88.5 0.38 1.3E-05 49.9 4.7 39 717-755 116-157 (180)
60 1g5v_A SurviVal motor neuron p 88.2 1.1 3.7E-05 41.5 7.1 54 716-771 9-65 (88)
61 2l8d_A Lamin-B receptor; DNA b 88.0 1.4 4.8E-05 39.2 7.2 53 715-769 7-61 (66)
62 2dig_A Lamin-B receptor; tudor 85.2 2 6.9E-05 38.3 6.7 52 715-768 10-63 (68)
63 2ebi_A DNA binding protein GT- 83.6 1.3 4.5E-05 39.8 5.1 55 43-97 3-72 (86)
64 2m0o_A PHD finger protein 1; t 83.6 1.3 4.4E-05 40.5 4.9 36 717-753 26-63 (79)
65 2xk0_A Polycomb protein PCL; t 83.4 1.2 4.1E-05 40.0 4.6 37 717-754 15-51 (69)
66 2e5p_A Protein PHF1, PHD finge 82.8 1.5 5E-05 39.2 4.9 36 717-753 9-46 (68)
67 2y9y_A Imitation switch protei 82.2 0.84 2.9E-05 52.0 4.0 55 36-93 115-171 (374)
68 4iej_A DNA methyltransferase 1 81.3 1.8 6E-05 40.9 5.1 42 45-86 31-77 (93)
69 2g3r_A Tumor suppressor P53-bi 81.3 2.4 8.1E-05 41.7 6.2 46 719-767 6-53 (123)
70 2eqj_A Metal-response element- 80.0 2.8 9.4E-05 37.4 5.6 38 715-753 11-50 (66)
71 2d9t_A Tudor domain-containing 79.6 3.9 0.00013 36.7 6.6 54 716-771 8-64 (78)
72 2xb0_X Chromo domain-containin 79.5 1.5 5.2E-05 47.9 4.7 43 44-86 3-50 (270)
73 3mp6_A MBP, SGF29, maltose-bin 78.3 1.7 5.8E-05 49.8 4.9 39 716-754 456-495 (522)
74 3sd4_A PHD finger protein 20; 76.0 4.2 0.00014 35.6 5.6 39 714-753 9-49 (69)
75 3s6w_A Tudor domain-containing 74.0 4.7 0.00016 33.4 5.2 51 718-769 2-54 (54)
76 2e5q_A PHD finger protein 19; 73.5 2.6 8.8E-05 37.2 3.5 38 715-753 5-44 (63)
77 1ug2_A 2610100B20RIK gene prod 73.3 5 0.00017 37.9 5.6 40 46-85 35-77 (95)
78 1ssf_A Transformation related 71.2 2.9 0.0001 42.5 3.9 35 719-753 10-45 (156)
79 2diq_A Tudor and KH domain-con 71.0 9.8 0.00034 35.5 7.2 73 687-770 11-85 (110)
80 3fdr_A Tudor and KH domain-con 70.9 18 0.00061 32.8 8.7 73 687-769 6-79 (94)
81 3pnw_C Tudor domain-containing 67.5 8.8 0.0003 34.5 5.8 55 715-770 15-71 (77)
82 3m9q_A Protein MALE-specific l 64.9 7.2 0.00025 37.2 4.9 40 713-752 15-66 (101)
83 3dlm_A Histone-lysine N-methyl 62.7 5.6 0.00019 42.3 4.2 50 717-768 68-123 (213)
84 2eqm_A PHD finger protein 20-l 58.4 18 0.0006 33.5 6.1 63 708-771 10-77 (88)
85 3oa6_A MALE-specific lethal 3 57.2 11 0.00036 36.6 4.6 54 714-767 16-82 (110)
86 2wac_A CG7008-PA; unknown func 56.6 46 0.0016 33.6 9.5 53 717-770 51-103 (218)
87 1wjq_A KIAA1798 protein; MBT d 48.6 26 0.00088 33.7 5.8 57 715-771 11-71 (107)
88 2lcc_A AT-rich interactive dom 47.5 10 0.00034 34.2 2.6 37 716-752 4-46 (76)
89 2lcd_A AT-rich interactive dom 52.5 4.1 0.00014 39.8 0.0 42 713-755 52-94 (118)
90 2biv_A SCML2 protein, sex COMB 42.8 35 0.0012 36.7 6.3 49 716-764 170-219 (243)
91 3m9p_A MALE-specific lethal 3 42.3 25 0.00085 34.1 4.6 40 713-752 15-66 (110)
92 1y71_A Kinase-associated prote 40.8 22 0.00077 35.3 4.1 34 717-752 7-40 (130)
93 1ofc_X ISWI protein; nuclear p 39.7 29 0.00099 38.7 5.3 41 44-84 212-268 (304)
94 1bax_A M-PMV MA, M-PMV matrix 38.9 10 0.00034 35.9 1.3 30 641-670 61-90 (94)
95 1wgs_A MYST histone acetyltran 38.6 27 0.00091 34.5 4.3 39 713-752 8-52 (133)
96 2r58_A Polycomb protein SCM; M 38.4 44 0.0015 36.4 6.3 57 715-771 141-201 (265)
97 2lr8_A CAsp8-associated protei 43.9 6.9 0.00024 35.2 0.0 39 46-85 16-57 (70)
98 1oz2_A Lethal(3)malignant brai 36.1 38 0.0013 37.9 5.5 51 715-765 250-301 (331)
99 2f5k_A MORF-related gene 15 is 33.2 43 0.0015 31.9 4.6 36 715-752 20-59 (102)
100 2ro0_A Histone acetyltransfera 30.9 53 0.0018 30.7 4.7 35 716-752 22-60 (92)
101 4b9w_A TDRD1, tudor domain-con 30.3 1.6E+02 0.0056 29.8 8.8 52 717-770 65-118 (201)
102 3dlm_A Histone-lysine N-methyl 30.1 38 0.0013 36.2 4.0 58 718-779 9-73 (213)
103 2eko_A Histone acetyltransfera 29.7 34 0.0011 31.8 3.2 39 715-753 7-52 (87)
104 2hqx_A P100 CO-activator tudor 29.6 1.7E+02 0.0058 30.3 8.9 74 687-770 42-117 (246)
105 3ut1_A Lethal(3)malignant brai 28.6 74 0.0025 35.5 6.2 53 714-766 244-297 (324)
106 4b9x_A TDRD1, tudor domain-con 28.4 1.2E+02 0.0042 31.3 7.6 52 717-770 65-118 (226)
107 2r58_A Polycomb protein SCM; M 25.8 81 0.0028 34.4 5.8 65 707-771 24-92 (265)
108 1oz2_A Lethal(3)malignant brai 25.5 87 0.003 35.0 6.1 57 715-771 146-206 (331)
109 2k3y_A Chromatin modification- 24.3 58 0.002 32.6 3.9 30 713-744 5-34 (136)
110 3ntk_A Maternal protein tudor; 22.2 2.8E+02 0.0096 27.5 8.5 37 717-753 47-84 (169)
111 3ut1_A Lethal(3)malignant brai 21.9 96 0.0033 34.6 5.5 57 715-771 141-201 (324)
112 3cgm_A SLYD, peptidyl-prolyl C 21.2 1.1E+02 0.0037 30.6 5.3 53 716-769 83-135 (158)
113 3tnu_B Keratin, type II cytosk 20.9 3.9E+02 0.013 25.7 9.0 61 868-938 37-97 (129)
114 2biv_A SCML2 protein, sex COMB 20.6 1.2E+02 0.004 32.6 5.7 65 707-771 52-120 (243)
115 2lrq_A Protein MRG15, NUA4 com 25.5 22 0.00075 32.7 0.0 36 715-752 10-49 (85)
No 1
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.13 E-value=5.5e-11 Score=107.51 Aligned_cols=57 Identities=26% Similarity=0.464 Sum_probs=51.3
Q ss_pred cccccccccccccCCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHh
Q 001101 30 DRSGKRKRKLSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFT 86 (1158)
Q Consensus 30 ~k~k~rk~k~~~~l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~ 86 (1158)
.-+|.+|++......+.||.||+++|++|+.+||.+|.+||.+|++||..||+.+|.
T Consensus 4 g~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~ 60 (79)
T 2yus_A 4 GSSGTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFL 60 (79)
T ss_dssp SSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHT
T ss_pred cccCccCCccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHH
Confidence 344566777888899999999999999999999999999999999999999999864
No 2
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.94 E-value=6.9e-10 Score=117.13 Aligned_cols=61 Identities=25% Similarity=0.447 Sum_probs=55.1
Q ss_pred cccccccccCCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhhhhhccc
Q 001101 34 KRKRKLSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSL 94 (1158)
Q Consensus 34 ~rk~k~~~~l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~~k~~l~l 94 (1158)
.|+...++....+||+||++.|++||++||++|.+||.+|+|||+.||+.+|...|--+.|
T Consensus 123 ~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRlnL 183 (235)
T 2iw5_B 123 YRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNI 183 (235)
T ss_dssp GCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTTH
T ss_pred ccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHhhH
Confidence 3556777778889999999999999999999999999999999999999999988876665
No 3
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.93 E-value=5.3e-10 Score=128.69 Aligned_cols=57 Identities=25% Similarity=0.470 Sum_probs=52.6
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhhhhhcccC
Q 001101 39 LSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLP 95 (1158)
Q Consensus 39 ~~~~l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~~k~~l~lp 95 (1158)
.+++...+||.|||+.|++||++|||||.+||.+|+|||+.||+++|..+|..+.|.
T Consensus 375 ~~~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~~ld 431 (482)
T 2xag_B 375 VIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNID 431 (482)
T ss_dssp CCCCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTTTHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhChH
Confidence 344567899999999999999999999999999999999999999999999888885
No 4
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.2e-09 Score=93.95 Aligned_cols=47 Identities=15% Similarity=0.310 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhhh
Q 001101 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNR 89 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~~k 89 (1158)
....||+||++.|+++|.+||++|.+||.+|.+||+.||...|.+.|
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45699999999999999999999999999999999999999998775
No 5
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=6.1e-09 Score=90.34 Aligned_cols=47 Identities=21% Similarity=0.548 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHH-HHhcchHHHHHHHHhhhh
Q 001101 43 LGPQWSKEELERFYEAYRKYGKDWKKIAA-AVRNRTAEMVEALFTMNR 89 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~-~v~tRt~~~v~s~y~~~k 89 (1158)
....||+||++.|.+||.+|||||.+|+. +|.+||+.||-..|.+.|
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK 55 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWK 55 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhccc
Confidence 45799999999999999999999999998 599999999999998876
No 6
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.60 E-value=4.8e-08 Score=86.14 Aligned_cols=44 Identities=30% Similarity=0.562 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHh
Q 001101 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFT 86 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~ 86 (1158)
-.+.||.||.+.|++++.+||.+|.+||.+|.+||..||+.+|.
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~ 51 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYAR 51 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHH
Confidence 35699999999999999999999999999999999999999965
No 7
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=1e-07 Score=84.24 Aligned_cols=50 Identities=30% Similarity=0.546 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcC------CChHHHHHHHhcchHHHHHHHHhhhhhhccc
Q 001101 43 LGPQWSKEELERFYEAYRKYG------KDWKKIAAAVRNRTAEMVEALFTMNRAYLSL 94 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~G------k~Wkkva~~v~tRt~~~v~s~y~~~k~~l~l 94 (1158)
..+.||.||+++|++++.+|| .+|.+||.+|.+||..||+.+|. +++..+
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~--~~l~~~ 62 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQ--KYFIKL 62 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHH--HHHGGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHH--HHHHHH
Confidence 456899999999999999999 79999999999999999999973 555443
No 8
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.50 E-value=1.6e-07 Score=79.89 Aligned_cols=48 Identities=25% Similarity=0.513 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CChHHHHHHHh-cchHHHHHHHHhhhhhhc
Q 001101 43 LGPQWSKEELERFYEAYRKYG-KDWKKIAAAVR-NRTAEMVEALFTMNRAYL 92 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~G-k~Wkkva~~v~-tRt~~~v~s~y~~~k~~l 92 (1158)
..+.||.||.+++++++.+|| .+|.+||.+|+ +||..|++.+|. ++|+
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~--~~~~ 57 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYL--KTYI 57 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHH--HHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHH--HHcc
Confidence 456899999999999999999 79999999999 999999999974 5554
No 9
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.49 E-value=9.5e-08 Score=84.60 Aligned_cols=46 Identities=28% Similarity=0.428 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCChHHHHH-HHhcchHHHHHHHHhhhh
Q 001101 44 GPQWSKEELERFYEAYRKYGKDWKKIAA-AVRNRTAEMVEALFTMNR 89 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~-~v~tRt~~~v~s~y~~~k 89 (1158)
-..||+||+..|.+||.+|||||.+|+. +|.+||+.||-..|.+.|
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK 54 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWK 54 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 3489999999999999999999999999 699999999999998765
No 10
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.46 E-value=2.2e-07 Score=79.34 Aligned_cols=45 Identities=24% Similarity=0.471 Sum_probs=41.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC-CChHHHHHHHhcchHHHHHHHHh
Q 001101 42 MLGPQWSKEELERFYEAYRKYG-KDWKKIAAAVRNRTAEMVEALFT 86 (1158)
Q Consensus 42 ~l~~~Ws~eEh~rF~ea~r~~G-k~Wkkva~~v~tRt~~~v~s~y~ 86 (1158)
...+.||.||.++|++++.+|| .+|.+||.+|.+||..|++.+|.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~ 51 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 51 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHH
Confidence 3456899999999999999999 69999999999999999999975
No 11
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.42 E-value=2.4e-07 Score=83.23 Aligned_cols=51 Identities=29% Similarity=0.623 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHhcchHHHHHHHHhhhhhhcccCccccc
Q 001101 44 GPQWSKEELERFYEAYRKYGKD----WKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTAS 100 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~Gk~----Wkkva~~v~tRt~~~v~s~y~~~k~~l~lpeg~as 100 (1158)
.+.||.+|..+|.+||..|+++ |.+||++|++||+++|+.+| ..|+.|..|
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY------~~l~~~~~s 62 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKY------MENPRGKGS 62 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHH------HHSSSSSCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHH------HHHHhcccc
Confidence 4589999999999999999984 99999999999999998774 456777655
No 12
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.31 E-value=3.3e-07 Score=82.05 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=44.3
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHcC----CChHHHHHHHhcchHHHHHHHHhh
Q 001101 39 LSDMLGPQWSKEELERFYEAYRKYG----KDWKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 39 ~~~~l~~~Ws~eEh~rF~ea~r~~G----k~Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
-++...+.||.||-..|++|+.+|| ..|.+||.+|.+||..||+.+|..
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~ 65 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL 65 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455778999999999999999999 579999999999999999999874
No 13
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.29 E-value=5.1e-07 Score=84.11 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhhhh
Q 001101 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRA 90 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~~k~ 90 (1158)
....||+|||+.|.++|..|||+|.+|+.+|.+||+.++-..|.+.|-
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~Kk 89 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKK 89 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcccc
Confidence 345899999999999999999999999999999999999999988763
No 14
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.54 E-value=1.5e-07 Score=86.51 Aligned_cols=46 Identities=20% Similarity=0.393 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhh
Q 001101 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMN 88 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~~ 88 (1158)
..+.||.||.+.|++++..||.+|..||.+|.+||..||+.+|+..
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNY 60 (89)
Confidence 4569999999999999999999999999999999999999998744
No 15
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.13 E-value=2.4e-06 Score=70.58 Aligned_cols=44 Identities=30% Similarity=0.518 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHhcchHHHHHHHHhh
Q 001101 44 GPQWSKEELERFYEAYRKYGK-DWKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
.+.||.||-+++++++..||. +|.+||.+|.+||..|++..|..
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 47 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK 47 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 468999999999999999999 99999999999999999998753
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.05 E-value=4.8e-06 Score=70.71 Aligned_cols=44 Identities=30% Similarity=0.536 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CChHHHHHHHhcchHHHHHHHHh
Q 001101 43 LGPQWSKEELERFYEAYRKYG-KDWKKIAAAVRNRTAEMVEALFT 86 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~G-k~Wkkva~~v~tRt~~~v~s~y~ 86 (1158)
-.+.||.||-+++++++..|| ++|.+||.+|.+||..|++..|.
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~ 51 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWL 51 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHH
Confidence 346899999999999999999 59999999999999999999986
No 17
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.05 E-value=5.3e-06 Score=74.10 Aligned_cols=45 Identities=24% Similarity=0.477 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC----ChHHHHHHHhcchHHHHHHHHhhh
Q 001101 43 LGPQWSKEELERFYEAYRKYGK----DWKKIAAAVRNRTAEMVEALFTMN 88 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk----~Wkkva~~v~tRt~~~v~s~y~~~ 88 (1158)
-.+.||.||+.+|..||.+||. .|.+||++| .||+.||+.+|..-
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 3568999999999999999984 599999999 59999999998754
No 18
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.04 E-value=3.5e-06 Score=69.67 Aligned_cols=43 Identities=28% Similarity=0.567 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHhcchHHHHHHHHh
Q 001101 44 GPQWSKEELERFYEAYRKYGK-DWKKIAAAVRNRTAEMVEALFT 86 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v~tRt~~~v~s~y~ 86 (1158)
.+.||.||-+++++++..||. +|.+||.+|.+||..|++..|.
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~ 46 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHH
Confidence 468999999999999999997 7999999999999999999986
No 19
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=9.5e-06 Score=70.97 Aligned_cols=45 Identities=29% Similarity=0.516 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CChHHHHHHHhcchHHHHHHHHhh
Q 001101 43 LGPQWSKEELERFYEAYRKYG-KDWKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~G-k~Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
-.+.||.||-+++++++.+|| .+|.+||.+|.+||..|++..|..
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYE 53 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 346999999999999999999 799999999999999999998853
No 20
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=97.89 E-value=1.3e-05 Score=70.45 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCC---hHHHHHHHh--cchHHHHHHHHhhhhhhccc
Q 001101 43 LGPQWSKEELERFYEAYRKYGKD---WKKIAAAVR--NRTAEMVEALFTMNRAYLSL 94 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk~---Wkkva~~v~--tRt~~~v~s~y~~~k~~l~l 94 (1158)
.+-+||.|.|++|++|+...|.+ ||+|...++ ..|..+|.|| .|||++.|
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSH--LQKYR~~l 60 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASH--LQKFRVAL 60 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHH--HHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHH--HHHHHHHH
Confidence 45699999999999999999987 899999988 6699999999 88888876
No 21
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=1.7e-05 Score=68.61 Aligned_cols=43 Identities=26% Similarity=0.514 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhh
Q 001101 44 GPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
.+.||.||-+++++++..||..|.+||.++ .||..||+.+|..
T Consensus 9 k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~-gRt~~qcr~Rw~~ 51 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEF 51 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTTCHHHHHHHH-SSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHhccc-CcCHHHHHHHHHH
Confidence 468999999999999999999999999955 5999999999864
No 22
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.87 E-value=1.2e-05 Score=75.00 Aligned_cols=45 Identities=33% Similarity=0.584 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CChHHHHHHHhcchHHHHHHHHhhh
Q 001101 44 GPQWSKEELERFYEAYRKYG----KDWKKIAAAVRNRTAEMVEALFTMN 88 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~G----k~Wkkva~~v~tRt~~~v~s~y~~~ 88 (1158)
.+.||.||-+.|.+|+.+|| ..|.+||.+|..||..||+.+|...
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL 56 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45899999999999999997 4699999999999999999998754
No 23
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.86 E-value=1.6e-05 Score=66.11 Aligned_cols=44 Identities=32% Similarity=0.552 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CChHHHHHHHh--cchHHHHHHHHhh
Q 001101 44 GPQWSKEELERFYEAYRKYG-KDWKKIAAAVR--NRTAEMVEALFTM 87 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~G-k~Wkkva~~v~--tRt~~~v~s~y~~ 87 (1158)
.+.||.||-+..++++..|| ..|.+|+..+. +||..|++..|..
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~ 48 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 36899999999999999999 69999999999 9999999998764
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.84 E-value=1.3e-05 Score=77.35 Aligned_cols=58 Identities=21% Similarity=0.381 Sum_probs=49.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhhhhhcccCccccc
Q 001101 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTAS 100 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~~k~~l~lpeg~as 100 (1158)
-.+.||.||-+.+++++..||..|.+||.+|.+||..||+..|..-.-.+.||.+.-+
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~~p~~~~~ 118 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQM 118 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHTTC------
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence 3568999999999999999999999999999999999999999988888899866543
No 25
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.70 E-value=4.3e-05 Score=71.68 Aligned_cols=45 Identities=29% Similarity=0.556 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhh
Q 001101 44 GPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMN 88 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~~ 88 (1158)
.+.||.||.+.+++++..||..|.+||.+|.+||..||+..|...
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMI 97 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999998653
No 26
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.70 E-value=3e-06 Score=76.20 Aligned_cols=45 Identities=33% Similarity=0.469 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC----ChHHHHHHHhcchHHHHHHHHhh
Q 001101 43 LGPQWSKEELERFYEAYRKYGK----DWKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk----~Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
.+..||.||...|-.||.+|++ .|.+||+.|+.||+++|+.+|-.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3568999999999999999999 49999999999999999998753
No 27
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.69 E-value=5.1e-05 Score=68.03 Aligned_cols=44 Identities=32% Similarity=0.485 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhh
Q 001101 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
-.+.||.||-+.+++++..||..|.+||..+ .||..||+..|..
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~ 65 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRL 65 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHH
Confidence 4579999999999999999999999999999 9999999998763
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.65 E-value=3.2e-05 Score=71.85 Aligned_cols=45 Identities=24% Similarity=0.530 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhh
Q 001101 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
-.+.||.||.+.+++++..||..|..||.+|.+||..||+..|+.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 99 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999864
No 29
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.65 E-value=6.2e-05 Score=65.74 Aligned_cols=45 Identities=31% Similarity=0.525 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CChHHHHHHHh--cchHHHHHHHHhh
Q 001101 43 LGPQWSKEELERFYEAYRKYG-KDWKKIAAAVR--NRTAEMVEALFTM 87 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~G-k~Wkkva~~v~--tRt~~~v~s~y~~ 87 (1158)
-.+.||.||-+..++++.+|| ..|.+||.++. +||..|++..|..
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~ 56 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 56 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHH
Confidence 356899999999999999999 59999999999 9999999998763
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.55 E-value=5.8e-05 Score=72.76 Aligned_cols=44 Identities=32% Similarity=0.428 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHh
Q 001101 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFT 86 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~ 86 (1158)
-.+.||.||-+++++++..||.+|..||.+|.+||..|++..|.
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~ 53 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWK 53 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHh
Confidence 35689999999999999999999999999999999999999886
No 31
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.54 E-value=8.9e-05 Score=64.59 Aligned_cols=42 Identities=33% Similarity=0.628 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHcCC-ChHHHHHHHh--cchHHHHHHHHh
Q 001101 45 PQWSKEELERFYEAYRKYGK-DWKKIAAAVR--NRTAEMVEALFT 86 (1158)
Q Consensus 45 ~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v~--tRt~~~v~s~y~ 86 (1158)
..||.||-+.+++++.+||. +|.+||.++. +||..|++-.|.
T Consensus 12 ~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~ 56 (64)
T 3sjm_A 12 QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR 56 (64)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHH
Confidence 47999999999999999995 9999999976 999999999874
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.49 E-value=7.8e-05 Score=69.25 Aligned_cols=46 Identities=26% Similarity=0.541 Sum_probs=42.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHhcchHHHHHHHHhh
Q 001101 42 MLGPQWSKEELERFYEAYRKYGK-DWKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 42 ~l~~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
...+.||.||-+++++++.+||. +|..||.+|.+||..|++..|..
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 48 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHh
Confidence 34679999999999999999997 79999999999999999998764
No 33
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=97.48 E-value=6.7e-05 Score=72.19 Aligned_cols=45 Identities=27% Similarity=0.532 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhh
Q 001101 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
-.+.||+||.+.+++++..||..|.+||.+|.+||..||+..|+.
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~ 122 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNS 122 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999999998863
No 34
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.46 E-value=0.00011 Score=68.81 Aligned_cols=42 Identities=19% Similarity=0.429 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHcCC-ChHHHHHHHhcchHHHHHHHHh
Q 001101 45 PQWSKEELERFYEAYRKYGK-DWKKIAAAVRNRTAEMVEALFT 86 (1158)
Q Consensus 45 ~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v~tRt~~~v~s~y~ 86 (1158)
+.||.||-+++++++..||. +|..||.+|.+||..|++..|.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~ 44 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWN 44 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHH
Confidence 68999999999999999996 8999999999999999999885
No 35
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=97.35 E-value=0.00018 Score=69.17 Aligned_cols=45 Identities=29% Similarity=0.526 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHhcchHHHHHHHHhh
Q 001101 43 LGPQWSKEELERFYEAYRKYGK-DWKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
-.+.||.||-+++++++..||. +|.+||.+|.+||..|++..|..
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHN 71 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHH
Confidence 3578999999999999999996 79999999999999999998863
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.34 E-value=0.00012 Score=70.78 Aligned_cols=45 Identities=27% Similarity=0.556 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhh
Q 001101 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
-.+.||.||.+.+++++..||..|..||.+|.+||..||+..|+.
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 97 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNS 97 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 346899999999999999999999999999999999999988753
No 37
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.17 E-value=0.00025 Score=70.43 Aligned_cols=45 Identities=24% Similarity=0.530 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhh
Q 001101 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
-.+.||.||.+.+++++..||..|.+||.+|.+||..||+..|+.
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~ 153 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 153 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHT
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHH
Confidence 457899999999999999999999999999999999999998764
No 38
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.08 E-value=0.00018 Score=69.61 Aligned_cols=44 Identities=16% Similarity=0.337 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CChHHHHHHHhcchHHHHHHHHhh
Q 001101 44 GPQWSKEELERFYEAYRKYG-KDWKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~G-k~Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
.|.||.||-++..+++..|| .+|..||.+|.+||..|++..|..
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 46 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFN 46 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhh
Confidence 47899999999999999999 689999999999999999998753
No 39
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.01 E-value=0.00043 Score=60.63 Aligned_cols=43 Identities=19% Similarity=0.407 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCChHHHHH---HHhcchHHHHHHHHh
Q 001101 44 GPQWSKEELERFYEAYRKYGKDWKKIAA---AVRNRTAEMVEALFT 86 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~---~v~tRt~~~v~s~y~ 86 (1158)
+..||+||-+..++++++||+.|++|+. ++-.||.++|..-|.
T Consensus 8 r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r 53 (62)
T 1x58_A 8 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYH 53 (62)
T ss_dssp SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHH
Confidence 4589999999999999999999999995 777999999988764
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=96.74 E-value=0.0012 Score=65.59 Aligned_cols=45 Identities=27% Similarity=0.532 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHhcchHHHHHHHHhh
Q 001101 43 LGPQWSKEELERFYEAYRKYGK-DWKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
-.+.||.||-+++++++..||. +|..||.++.+||..|++..|..
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 102 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 102 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHH
Confidence 3579999999999999999996 79999999999999999998753
No 41
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.71 E-value=0.0019 Score=59.23 Aligned_cols=49 Identities=20% Similarity=0.309 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHcCC-ChHHHHHH----HhcchHHHHHHHHhhhhhhccc
Q 001101 46 QWSKEELERFYEAYRKYGK-DWKKIAAA----VRNRTAEMVEALFTMNRAYLSL 94 (1158)
Q Consensus 46 ~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~----v~tRt~~~v~s~y~~~k~~l~l 94 (1158)
.||.||-+.+++++.+||. .|++|+.. +.+||..|++..|....-+-++
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~ 55 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI 55 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccC
Confidence 6999999999999999999 99999996 7899999999988665444444
No 42
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.27 E-value=0.00069 Score=78.70 Aligned_cols=47 Identities=15% Similarity=0.342 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhhhh
Q 001101 44 GPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRA 90 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~tRt~~~v~s~y~~~k~ 90 (1158)
...||.+|+..|.++|.+|||+|.+|+.+|.+||+.+|-..|.+.|.
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~WKK 235 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKK 235 (482)
T ss_dssp -----------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhccccc
Confidence 34899999999999999999999999999999999999999988664
No 43
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.02 E-value=0.0061 Score=58.20 Aligned_cols=52 Identities=17% Similarity=0.292 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHH----hcchHHHHHHHHhhhhhhccc
Q 001101 43 LGPQWSKEELERFYEAYRKYGK-DWKKIAAAV----RNRTAEMVEALFTMNRAYLSL 94 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v----~tRt~~~v~s~y~~~k~~l~l 94 (1158)
-...||.||-+..++++.+||. .|++|+... ..||..+++..|....-+-++
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~ 68 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKI 68 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccC
Confidence 3468999999999999999999 999999965 699999999987654433333
No 44
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=95.97 E-value=0.014 Score=57.00 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHH----hcchHHHHHHHHhhhh
Q 001101 43 LGPQWSKEELERFYEAYRKYGK-DWKKIAAAV----RNRTAEMVEALFTMNR 89 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v----~tRt~~~v~s~y~~~k 89 (1158)
-...||.||-+..++++.+||. .|++|+... ..||..|++..|...-
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnll 81 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLV 81 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 4569999999999999999998 999999986 6999999998875544
No 45
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=95.89 E-value=0.01 Score=58.02 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=45.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHH----hcchHHHHHHHHhhhhhhccc
Q 001101 42 MLGPQWSKEELERFYEAYRKYGK-DWKKIAAAV----RNRTAEMVEALFTMNRAYLSL 94 (1158)
Q Consensus 42 ~l~~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v----~tRt~~~v~s~y~~~k~~l~l 94 (1158)
+-.+.||.||-+..++++.+||. .|.+|+... ..||..|++..|....-+-.+
T Consensus 15 r~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~ 72 (121)
T 2juh_A 15 RIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI 72 (121)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhcc
Confidence 34569999999999999999999 999999997 699999999988665544455
No 46
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.36 E-value=0.022 Score=63.03 Aligned_cols=51 Identities=31% Similarity=0.466 Sum_probs=44.3
Q ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHhcchHHHHHHHHh
Q 001101 36 KRKLSDMLGPQWSKEELERFYEAYRKYGK-DWKKIAAAVRNRTAEMVEALFT 86 (1158)
Q Consensus 36 k~k~~~~l~~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v~tRt~~~v~s~y~ 86 (1158)
|-+|..--=+-||+.+-..|..|..+||+ +|.+||+.|+++|.+.|+..|.
T Consensus 102 Ke~Ll~eGF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~ 153 (304)
T 1ofc_X 102 KENLLSQGFTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNA 153 (304)
T ss_dssp HHHHTTSSCTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHH
T ss_pred HHHHHHhhhcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 44455545568999999999999999999 8999999999999999999754
No 47
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=94.09 E-value=0.026 Score=60.72 Aligned_cols=47 Identities=21% Similarity=0.274 Sum_probs=41.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCC------hHHHHHHHhcchHHHHHHHHhh
Q 001101 41 DMLGPQWSKEELERFYEAYRKYGKD------WKKIAAAVRNRTAEMVEALFTM 87 (1158)
Q Consensus 41 ~~l~~~Ws~eEh~rF~ea~r~~Gk~------Wkkva~~v~tRt~~~v~s~y~~ 87 (1158)
+.....||+||=+.-++++++||.. |..||.++.+||..||+..|..
T Consensus 5 ~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~ 57 (246)
T 1ign_A 5 SHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRV 57 (246)
T ss_dssp ---CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHH
Confidence 3445699999999999999999885 9999999999999999999864
No 48
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=93.45 E-value=0.082 Score=49.65 Aligned_cols=42 Identities=17% Similarity=0.448 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHH-----hcchHHHHHHHHh
Q 001101 45 PQWSKEELERFYEAYRKYGKDWKKIAAAV-----RNRTAEMVEALFT 86 (1158)
Q Consensus 45 ~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v-----~tRt~~~v~s~y~ 86 (1158)
+-||+||-+.-++..+.||-.|-.|+... ..||++.|+..|.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY 77 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYY 77 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHH
Confidence 79999999999999999999999999999 5899999988764
No 49
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.37 E-value=0.22 Score=44.80 Aligned_cols=54 Identities=11% Similarity=0.188 Sum_probs=44.2
Q ss_pred CCCccCCCEEEEEcCCCCCcccceEEEEec-CeeEEEeccCCCceeEecccccccCCC
Q 001101 715 ARPLYVGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDKRELGIEFVQDIDCMPLNP 771 (1158)
Q Consensus 715 P~PL~VG~kV~A~hp~~r~l~~GtVlavd~-~~YrV~FdrpeLGv~~VpD~dvmp~~p 771 (1158)
+..+.||+.|.|+.. ....|.|+|.+|+. .+|.|.|+- .-.+.|+-.+|-|+.+
T Consensus 7 ~~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~~~~~V~f~D--yn~e~v~~~~lrplp~ 61 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-DCRYYPAKIEAINKEGTFTVQFYD--GVIRCLKRMHIKAMPE 61 (74)
T ss_dssp CCCCCTTCEEEEECS-SSSEEEEEEEEESTTSSEEEEETT--SCEEEECGGGEECCCG
T ss_pred CCCCCCCCEEEEECC-CCCEEEEEEEEECCCCEEEEEEec--CCeEEecHHHCeeCCh
Confidence 457899999999988 66789999999988 789999985 2678888777765543
No 50
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=91.85 E-value=0.13 Score=50.13 Aligned_cols=38 Identities=24% Similarity=0.480 Sum_probs=32.9
Q ss_pred CCCccCCCEEEEEcCCCCCcccceEEEEec-CeeEEEecc
Q 001101 715 ARPLYVGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDK 753 (1158)
Q Consensus 715 P~PL~VG~kV~A~hp~~r~l~~GtVlavd~-~~YrV~Fdr 753 (1158)
..++.+||+|+|.|+. ..+|.|+|..+.. ..|.|.|+-
T Consensus 3 ~~~v~vGq~V~akh~n-gryy~~~V~~~~~~~~y~V~F~D 41 (118)
T 2qqr_A 3 MQSITAGQKVISKHKN-GRFYQCEVVRLTTETFYEVNFDD 41 (118)
T ss_dssp SSCCCTTCEEEEECTT-SSEEEEEEEEEEEEEEEEEEETT
T ss_pred cceeccCCEEEEECCC-CCEEeEEEEEEeeEEEEEEEcCC
Confidence 4689999999999985 4588999999988 589999995
No 51
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=91.84 E-value=0.075 Score=52.15 Aligned_cols=58 Identities=28% Similarity=0.452 Sum_probs=41.9
Q ss_pred cCCCccCCCEEEEEcCCCCCcccceEEEEec-CeeEEEeccCCCc----eeEecccccccCCCC
Q 001101 714 LARPLYVGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDKRELG----IEFVQDIDCMPLNPL 772 (1158)
Q Consensus 714 IP~PL~VG~kV~A~hp~~r~l~~GtVlavd~-~~YrV~FdrpeLG----v~~VpD~dvmp~~pl 772 (1158)
.+.++.|||+|+|.|+. ..+|.|+|..+.. ..|.|.|+-.-.. ++-|-..||.=+.|+
T Consensus 3 ~~~~v~vGq~V~ak~~n-gryy~~~V~~~~~~~~y~V~F~DgS~s~dl~PedIvs~dc~~~GpP 65 (123)
T 2xdp_A 3 CEKVISVGQTVITKHRN-TRYYSCRVMAVTSQTFYEVMFDDGSFSRDTFPEDIVSRDCLKLGPP 65 (123)
T ss_dssp -CCCCCTTCCCCCCCCC-CCCCCCEEEEEEEEEEEEEEETTSCEEEEECGGGBCSSCHHHHCCC
T ss_pred CccccccCCEEEEECCC-CcEEeEEEEEEeeEEEEEEEcCCCCccCCCCHhHcccccccccCCC
Confidence 35789999999999986 6689999999988 5899999964333 222444455544443
No 52
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.64 E-value=0.13 Score=52.70 Aligned_cols=43 Identities=23% Similarity=0.471 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHHHcCC---ChHHHHHHHh--cchHHHHHHHHhh
Q 001101 45 PQWSKEELERFYEAYRKYGK---DWKKIAAAVR--NRTAEMVEALFTM 87 (1158)
Q Consensus 45 ~~Ws~eEh~rF~ea~r~~Gk---~Wkkva~~v~--tRt~~~v~s~y~~ 87 (1158)
.-||+.|..+|+.|+.+||. .|..|++... .||.+.|+.+|..
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~ 55 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGEL 55 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 36999999999999999993 6999988754 9999999987553
No 53
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=90.73 E-value=0.29 Score=42.53 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=30.6
Q ss_pred ccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEecc
Q 001101 718 LYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDK 753 (1158)
Q Consensus 718 L~VG~kV~A~hp~~r~l~~GtVlavd~--~~YrV~Fdr 753 (1158)
|.+|+-|.|+... ..+|.|+|..|+. .+|.|+|+-
T Consensus 4 f~~GedVLarwsD-G~fYlGtI~~V~~~~~~clV~F~D 40 (58)
T 4hcz_A 4 LWEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFED 40 (58)
T ss_dssp CCTTCEEEEECTT-SCEEEEEEEEEETTTTEEEEEETT
T ss_pred cccCCEEEEEecC-CCEEeEEEEEEecCCCEEEEEEcC
Confidence 7899999999876 3479999999999 499999986
No 54
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=90.57 E-value=0.46 Score=42.27 Aligned_cols=55 Identities=15% Similarity=0.286 Sum_probs=41.6
Q ss_pred cCCCccCCCEEEEEcCCCCCcccceEEEEec-CeeEEEeccCCCceeEecccccccCCC
Q 001101 714 LARPLYVGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDKRELGIEFVQDIDCMPLNP 771 (1158)
Q Consensus 714 IP~PL~VG~kV~A~hp~~r~l~~GtVlavd~-~~YrV~FdrpeLGv~~VpD~dvmp~~p 771 (1158)
+|.-+.||.+|.|+- .....|.|+|.+|.. ..|.|+|+- --+++|.-.+|-|+..
T Consensus 3 ~~~~~~vGd~vmArW-~D~~yYpA~I~si~~~~~Y~V~F~d--G~~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-SDCRFYPAKVTAVNKDGTYTVKFYD--GVVQTVKHIHVKAFSK 58 (67)
T ss_dssp --CCCCTTCEEEEEC-TTSCEEEEEEEEECTTSEEEEEETT--SCEEEEEGGGEEECC-
T ss_pred cCcccccCCEEEEEc-CCCCEeeEEEEEECCCCeEEEEEeC--CceEEEeHHHcccCCc
Confidence 466789999999997 445789999999999 589999995 2457777777755433
No 55
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=90.07 E-value=0.48 Score=43.98 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=40.7
Q ss_pred cccCCCccCCCEEEEEcCCCCCcccceEEEEec-CeeEEEeccCCCceeEecccccccC
Q 001101 712 TDLARPLYVGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDKRELGIEFVQDIDCMPL 769 (1158)
Q Consensus 712 ~dIP~PL~VG~kV~A~hp~~r~l~~GtVlavd~-~~YrV~FdrpeLGv~~VpD~dvmp~ 769 (1158)
.+=|..+.||.+|.|+- .....|.++|.+|.. .+|.|+|+- --+++|.-.+|-|+
T Consensus 16 ~~~~~~f~vGd~VlArW-~D~~yYPAkI~sV~~~~~YtV~F~D--G~~etvk~~~IKp~ 71 (85)
T 3qii_A 16 QGGSSEFQINEQVLACW-SDCRFYPAKVTAVNKDGTYTVKFYD--GVVQTVKHIHVKAF 71 (85)
T ss_dssp -----CCCTTCEEEEEC-TTSCEEEEEEEEECTTSEEEEEETT--SCEEEEEGGGEEEC
T ss_pred ccCCcccccCCEEEEEe-CCCCEeeEEEEEECCCCeEEEEEeC--CCeEEecHHHcccC
Confidence 34578999999999988 545689999999999 589999995 23477777777554
No 56
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=89.66 E-value=0.91 Score=38.50 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=42.6
Q ss_pred CccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEeccCCCc-eeEecccccccCC
Q 001101 717 PLYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDKRELG-IEFVQDIDCMPLN 770 (1158)
Q Consensus 717 PL~VG~kV~A~hp~~r~l~~GtVlavd~--~~YrV~FdrpeLG-v~~VpD~dvmp~~ 770 (1158)
.+.+|+.|.|+.......|.++|+.++. .+|.|.|. +.| .+.|+=.++.|+.
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~--DYGn~e~v~~~~Lr~~~ 57 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYT--GYGNREEQNLSDLLSPI 57 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEET--TTTEEEEEEGGGCBCTT
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEE--cCCCEEEEcHHHeeCCC
Confidence 4789999999987666789999999996 79999997 455 5778777777664
No 57
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=88.84 E-value=1.2 Score=38.49 Aligned_cols=54 Identities=15% Similarity=0.324 Sum_probs=44.0
Q ss_pred CCCccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEeccCCCc-eeEecccccccCC
Q 001101 715 ARPLYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDKRELG-IEFVQDIDCMPLN 770 (1158)
Q Consensus 715 P~PL~VG~kV~A~hp~~r~l~~GtVlavd~--~~YrV~FdrpeLG-v~~VpD~dvmp~~ 770 (1158)
...+.||+.+.|+.......|.++|+.++. ..|.|.|.- .| .+.|+=.++.|++
T Consensus 6 ~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvd--YGn~e~V~~~~Lrpl~ 62 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAG--YGNAEVTPLLNLKPVE 62 (64)
T ss_dssp SSCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETT--TTEEEEEEGGGEECCS
T ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEe--cCCEEEEeHHHcEeCC
Confidence 356799999999987667789999999997 589999994 55 4777777777654
No 58
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=88.48 E-value=0.08 Score=48.64 Aligned_cols=53 Identities=15% Similarity=0.327 Sum_probs=42.0
Q ss_pred cCCCccCCCEEEEEcCCCCCcccceEEEEec-CeeEEEeccCCCceeEecccccccC
Q 001101 714 LARPLYVGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDKRELGIEFVQDIDCMPL 769 (1158)
Q Consensus 714 IP~PL~VG~kV~A~hp~~r~l~~GtVlavd~-~~YrV~FdrpeLGv~~VpD~dvmp~ 769 (1158)
+|..+.+|++|.|+.. ....|.++|.+|+. .+|.|.|+- + -.+.|+-.+|-|+
T Consensus 3 ~~~~~kvGd~clAkws-Dg~wY~A~I~~v~~~~~y~V~F~D-G-n~E~V~~s~LrPl 56 (81)
T 2ldm_A 3 MSSEFQINEQVLASWS-DSRFYPAKVTAVNKDGTYTVKFYD-G-VVQTVKHIHVKAF 56 (81)
Confidence 5778999999999877 66789999999976 689999995 3 4466665565543
No 59
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=88.47 E-value=0.38 Score=49.90 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=34.7
Q ss_pred CccCCCEEEEEcCCCCCcccceEEEEec---CeeEEEeccCC
Q 001101 717 PLYVGQRIIAVHPRTREICDGSVLTVEH---SRYRVQFDKRE 755 (1158)
Q Consensus 717 PL~VG~kV~A~hp~~r~l~~GtVlavd~---~~YrV~Fdrpe 755 (1158)
.|..|++|.|+.|.|-.+|.++|.+... ..|+|.|+-.+
T Consensus 116 ~f~~G~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~L~FEdde 157 (180)
T 3mea_A 116 LFQKEQLVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTS 157 (180)
T ss_dssp SCCTTCEEEEECTTSSEEEEEEEEECCSSTTCCEEEEEBCTT
T ss_pred cCCCCCEEEEeCCCCceeeEEEEecCCCCCCCcEEEEEcCCC
Confidence 4899999999999999999999999755 48999999754
No 60
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=88.18 E-value=1.1 Score=41.54 Aligned_cols=54 Identities=15% Similarity=0.149 Sum_probs=44.2
Q ss_pred CCccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEeccCCCc-eeEecccccccCCC
Q 001101 716 RPLYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDKRELG-IEFVQDIDCMPLNP 771 (1158)
Q Consensus 716 ~PL~VG~kV~A~hp~~r~l~~GtVlavd~--~~YrV~FdrpeLG-v~~VpD~dvmp~~p 771 (1158)
.++.||+.|.|+.......|.++|..|+. .+|.|.|. +.| .+.|+=.++.|+.+
T Consensus 9 ~~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fi--DYGN~E~V~~~~Lrp~~~ 65 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYT--GYGNREEQNLSDLLSPIC 65 (88)
T ss_dssp CCCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEET--TTCCEEEEEGGGCBCCC-
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEe--cCCCEEEEcHHHcccCCh
Confidence 36889999999987777889999999997 79999997 455 58888778876543
No 61
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=87.98 E-value=1.4 Score=39.20 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=43.9
Q ss_pred CCCccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEeccCCCceeEecccccccC
Q 001101 715 ARPLYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDKRELGIEFVQDIDCMPL 769 (1158)
Q Consensus 715 P~PL~VG~kV~A~hp~~r~l~~GtVlavd~--~~YrV~FdrpeLGv~~VpD~dvmp~ 769 (1158)
|.-+.||..|.|+-|.....|.+.|.+++. .-|.|+|-. + -++.++--||=|+
T Consensus 7 ~~~~~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKd-g-T~e~L~~kDIkp~ 61 (66)
T 2l8d_A 7 NRKYADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKD-G-TELALKESDIRLQ 61 (66)
T ss_dssp SSSSCSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETT-S-CEEEEEGGGEECS
T ss_pred ceEeecCCEEEEEcCCCccceEEEEEEeccCCceEEEEecC-C-CEEeechhccccc
Confidence 456899999999999889999999999998 479999986 2 3467776677655
No 62
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=85.17 E-value=2 Score=38.35 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=41.3
Q ss_pred CCCccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEeccCCCceeEeccccccc
Q 001101 715 ARPLYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDKRELGIEFVQDIDCMP 768 (1158)
Q Consensus 715 P~PL~VG~kV~A~hp~~r~l~~GtVlavd~--~~YrV~FdrpeLGv~~VpD~dvmp 768 (1158)
|.-+.||..|.|+-|.....|.+.|.+++. .-|.|+|-. + -++.+.--||-|
T Consensus 10 ~~~f~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKd-g-T~e~L~~kDIKp 63 (68)
T 2dig_A 10 SRKFADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKD-G-TELELKENDIKS 63 (68)
T ss_dssp CCSSCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTT-S-CEEEEETTTEEC
T ss_pred ceEeecCCEEEEEccCCccceEEEEEEeccCCceEEEEecC-C-CEEEechhcccc
Confidence 467899999999999888999999999998 479999986 2 335555555543
No 63
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=83.64 E-value=1.3 Score=39.83 Aligned_cols=55 Identities=15% Similarity=0.367 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC----------ChHHHHHHHh----cchHHHHHHHH-hhhhhhcccCcc
Q 001101 43 LGPQWSKEELERFYEAYRKYGK----------DWKKIAAAVR----NRTAEMVEALF-TMNRAYLSLPEG 97 (1158)
Q Consensus 43 l~~~Ws~eEh~rF~ea~r~~Gk----------~Wkkva~~v~----tRt~~~v~s~y-~~~k~~l~lpeg 97 (1158)
-+++||.+|...|++++..+-. -|+.||..+. .||..|.+.-+ ++.+.|-++=+.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~ 72 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHH 72 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3579999999999999975322 6999999988 89999998765 578888887553
No 64
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=83.55 E-value=1.3 Score=40.53 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=30.6
Q ss_pred CccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEecc
Q 001101 717 PLYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDK 753 (1158)
Q Consensus 717 PL~VG~kV~A~hp~~r~l~~GtVlavd~--~~YrV~Fdr 753 (1158)
-|.+|+-|.|++... -+|.|+|..|+. ..|.|+|+-
T Consensus 26 ~f~eGeDVLarwsDG-lfYLGTI~kV~~~~e~ClV~F~D 63 (79)
T 2m0o_A 26 RLWEGQDVLARWTDG-LLYLGTIKKVDSAREVCLVQFED 63 (79)
T ss_dssp CCCTTCEEEBCCTTS-CCCEEEEEEEETTTTEEEEEETT
T ss_pred eeccCCEEEEEecCC-CEEeEEEEEeccCCCEEEEEEcC
Confidence 589999999976552 369999999998 589999996
No 65
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=83.43 E-value=1.2 Score=39.95 Aligned_cols=37 Identities=11% Similarity=0.301 Sum_probs=30.6
Q ss_pred CccCCCEEEEEcCCCCCcccceEEEEecCeeEEEeccC
Q 001101 717 PLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFDKR 754 (1158)
Q Consensus 717 PL~VG~kV~A~hp~~r~l~~GtVlavd~~~YrV~Fdrp 754 (1158)
-+.+|+-|.|+... ..+|-|+|+.....+|.|+|+-.
T Consensus 15 ~~~~geDVL~rw~D-G~fYLGtIVd~~~~~ClV~FeD~ 51 (69)
T 2xk0_A 15 TYALQEDVFIKCND-GRFYLGTIIDQTSDQYLIRFDDQ 51 (69)
T ss_dssp CCCTTCEEEEECTT-SCEEEEEEEEECSSCEEEEETTC
T ss_pred ccccCCeEEEEecC-CCEEEEEEEecCCceEEEEecCC
Confidence 47899999998655 56799999776668999999963
No 66
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.81 E-value=1.5 Score=39.21 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=30.8
Q ss_pred CccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEecc
Q 001101 717 PLYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDK 753 (1158)
Q Consensus 717 PL~VG~kV~A~hp~~r~l~~GtVlavd~--~~YrV~Fdr 753 (1158)
-|.+||-|.|++.. .-+|.|+|..|+. .+|.|+|.-
T Consensus 9 ~f~eGqdVLarWsD-GlfYlGtV~kV~~~~~~ClV~FeD 46 (68)
T 2e5p_A 9 RLWEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFED 46 (68)
T ss_dssp CCCTTCEEEEECTT-SSEEEEEEEEEETTTTEEEEEETT
T ss_pred ccccCCEEEEEecC-CcEEEeEEEEEecCCcEEEEEEcc
Confidence 58899999998766 3469999999997 689999985
No 67
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=82.18 E-value=0.84 Score=51.95 Aligned_cols=55 Identities=29% Similarity=0.429 Sum_probs=45.0
Q ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHh-cchHHHHHHHHhhhhhhcc
Q 001101 36 KRKLSDMLGPQWSKEELERFYEAYRKYGK-DWKKIAAAVR-NRTAEMVEALFTMNRAYLS 93 (1158)
Q Consensus 36 k~k~~~~l~~~Ws~eEh~rF~ea~r~~Gk-~Wkkva~~v~-tRt~~~v~s~y~~~k~~l~ 93 (1158)
|-+|..--=+-||+-+...|+.|..+||+ +-..||+.|+ ++|.+.|+.. .++|..
T Consensus 115 Ke~LL~eGF~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y---~~vFw~ 171 (374)
T 2y9y_A 115 KADWESEGFTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAY---AKAFWS 171 (374)
T ss_dssp HHHHHHHCCCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHH---HHHHHH
T ss_pred HHHHHHhhhcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHH---HHHHHH
Confidence 33444434568999999999999999999 6999999999 9999999975 355654
No 68
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=81.33 E-value=1.8 Score=40.85 Aligned_cols=42 Identities=17% Similarity=0.424 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHh-----cchHHHHHHHHh
Q 001101 45 PQWSKEELERFYEAYRKYGKDWKKIAAAVR-----NRTAEMVEALFT 86 (1158)
Q Consensus 45 ~~Ws~eEh~rF~ea~r~~Gk~Wkkva~~v~-----tRt~~~v~s~y~ 86 (1158)
+-||+||-+..++..+.|+-.|--|++--- .||++++...|.
T Consensus 31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY 77 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYY 77 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHH
Confidence 579999999999999999999999999864 799999988765
No 69
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=81.31 E-value=2.4 Score=41.71 Aligned_cols=46 Identities=24% Similarity=0.400 Sum_probs=36.1
Q ss_pred cCCCEEEEEcCCCCCcccceEEEEec-CeeEEEeccCCCce-eEecccccc
Q 001101 719 YVGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDKRELGI-EFVQDIDCM 767 (1158)
Q Consensus 719 ~VG~kV~A~hp~~r~l~~GtVlavd~-~~YrV~FdrpeLGv-~~VpD~dvm 767 (1158)
.+|.+|+|+.......|.|+|..+-. +.|+|.||- |. ..|.--+||
T Consensus 6 ~~G~rV~AkWsdn~~yYpG~V~~~~~~~ky~V~FdD---g~~~~v~~k~ii 53 (123)
T 2g3r_A 6 FVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDD---GYECDVLGKDIL 53 (123)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEEEETTEEEEEETT---SCEEEEEGGGEE
T ss_pred ccceEEEEEeccCCcCcccEEEEeccCCeEEEEEcC---CCeeEeecceEE
Confidence 48999999988666799999998655 689999996 44 346555665
No 70
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=80.01 E-value=2.8 Score=37.43 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=31.4
Q ss_pred CCCccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEecc
Q 001101 715 ARPLYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDK 753 (1158)
Q Consensus 715 P~PL~VG~kV~A~hp~~r~l~~GtVlavd~--~~YrV~Fdr 753 (1158)
+.-|.||+-|.|+. .....|.|+|..|+. .+|.|+|.-
T Consensus 11 ~~~f~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D 50 (66)
T 2eqj_A 11 ACKFEEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFED 50 (66)
T ss_dssp CCCSCTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETT
T ss_pred cccccCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEcc
Confidence 34699999999987 223459999999998 699999985
No 71
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=79.64 E-value=3.9 Score=36.67 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=42.7
Q ss_pred CCccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEeccCCCc-eeEecccccccCCC
Q 001101 716 RPLYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDKRELG-IEFVQDIDCMPLNP 771 (1158)
Q Consensus 716 ~PL~VG~kV~A~hp~~r~l~~GtVlavd~--~~YrV~FdrpeLG-v~~VpD~dvmp~~p 771 (1158)
..+.+|+.|.|........|.++|+.++. ..|.|.|. +.| ++.|+=.++.|+.+
T Consensus 8 ~~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fi--DYGN~e~V~~~~Lr~l~~ 64 (78)
T 2d9t_A 8 KVWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFT--DYGNYEEVLLSNIKPVQT 64 (78)
T ss_dssp CCCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEET--TTTEEEEEEGGGEEECCC
T ss_pred cCCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEE--cCCCeEEEcHHHeEeCCH
Confidence 46789999999987666789999999987 78999997 455 47777667766543
No 72
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=79.45 E-value=1.5 Score=47.90 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---ChHHHHHH--HhcchHHHHHHHHh
Q 001101 44 GPQWSKEELERFYEAYRKYGK---DWKKIAAA--VRNRTAEMVEALFT 86 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~Gk---~Wkkva~~--v~tRt~~~v~s~y~ 86 (1158)
.+.||+-|+.+||.+|.+||- .|.-|++- +-.|+.+.|+.+|.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~ 50 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYD 50 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 457999999999999999996 46666543 23899999999876
No 73
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=78.28 E-value=1.7 Score=49.78 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=34.5
Q ss_pred CCccCCCEEEEEcCCCCCcccceEEEEec-CeeEEEeccC
Q 001101 716 RPLYVGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDKR 754 (1158)
Q Consensus 716 ~PL~VG~kV~A~hp~~r~l~~GtVlavd~-~~YrV~Fdrp 754 (1158)
..|++|++|.|+.|.|-.+|.++|...-. ..|+|+|+--
T Consensus 456 ~~~~~~~~v~a~~p~tt~fy~a~v~~~~~~~~~~~~f~~~ 495 (522)
T 3mp6_A 456 KNYPPGTKVLARYPETTTFYPAIVIGTKRDGTCRLRFDGE 495 (522)
T ss_dssp CCCCTTCEEEEECTTCSEEEEEEEEEECTTSCEEEEETTC
T ss_pred cCCCCCCEEEEECCCCcceEeEEEecCCCCCeEEEEecCC
Confidence 35899999999999999999999999755 4799999964
No 74
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=75.96 E-value=4.2 Score=35.65 Aligned_cols=39 Identities=10% Similarity=0.179 Sum_probs=31.8
Q ss_pred cCCCccCCCEEEEEcCCCCCcccceEEEEe--cCeeEEEecc
Q 001101 714 LARPLYVGQRIIAVHPRTREICDGSVLTVE--HSRYRVQFDK 753 (1158)
Q Consensus 714 IP~PL~VG~kV~A~hp~~r~l~~GtVlavd--~~~YrV~Fdr 753 (1158)
-+..|.||.||-|+.+.... |..+|..|+ ...|+|.||.
T Consensus 9 ~~~~F~vGmkLEa~d~~~p~-~~AtV~~v~~~~~~~~VhfdG 49 (69)
T 3sd4_A 9 RGISFEVGAQLEARDRLKNW-YPAHIEDIDYEEGKVLIHFKR 49 (69)
T ss_dssp TTCCCSTTCEEEEECTTSCE-EEEEEEEEETTTTEEEEEETT
T ss_pred CCCCcCCCCEEEEEECCCCc-cccEEEEEeccCCEEEEEeCC
Confidence 45589999999999765433 999999996 3789999994
No 75
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=74.02 E-value=4.7 Score=33.41 Aligned_cols=51 Identities=16% Similarity=0.080 Sum_probs=38.3
Q ss_pred ccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEeccCCCceeEecccccccC
Q 001101 718 LYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDKRELGIEFVQDIDCMPL 769 (1158)
Q Consensus 718 L~VG~kV~A~hp~~r~l~~GtVlavd~--~~YrV~FdrpeLGv~~VpD~dvmp~ 769 (1158)
+.+|+.+.|........|.++|+.++. ..|.|.|.-=| ..+.|+=.++.|+
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYG-n~e~v~~~~lrpi 54 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYG-NYEEVLLSNIKPI 54 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTC-CEEEEEGGGEECC
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccC-CeEEEeHHHEEEC
Confidence 579999999987667789999999976 58999998422 3577776666553
No 76
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.54 E-value=2.6 Score=37.23 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=31.1
Q ss_pred CCCccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEecc
Q 001101 715 ARPLYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDK 753 (1158)
Q Consensus 715 P~PL~VG~kV~A~hp~~r~l~~GtVlavd~--~~YrV~Fdr 753 (1158)
+.-|.+|+-|.|+.... -+|.|+|..|+. .+|.|+|.-
T Consensus 5 ~~~f~eGqdVLarWsDG-lfYlgtV~kV~~~~~~ClV~FeD 44 (63)
T 2e5q_A 5 SSGLTEGQYVLCRWTDG-LYYLGKIKRVSSSKQSCLVTFED 44 (63)
T ss_dssp CCCCCTTCEEEEECTTS-CEEEEEECCCCSTTSEEEEEETT
T ss_pred ccceecCCEEEEEecCC-CEEEEEEEEEecCCCEEEEEEcc
Confidence 34588999999987552 369999999997 589999985
No 77
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=73.35 E-value=5 Score=37.89 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHcCC---ChHHHHHHHhcchHHHHHHHH
Q 001101 46 QWSKEELERFYEAYRKYGK---DWKKIAAAVRNRTAEMVEALF 85 (1158)
Q Consensus 46 ~Ws~eEh~rF~ea~r~~Gk---~Wkkva~~v~tRt~~~v~s~y 85 (1158)
.||.||=.--|.+++.-|. -|..||..+++||..||+-.|
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RF 77 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRF 77 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHH
Confidence 7999999999999999988 899999999999999998654
No 78
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=71.21 E-value=2.9 Score=42.53 Aligned_cols=35 Identities=23% Similarity=0.481 Sum_probs=31.0
Q ss_pred cCCCEEEEEcCCCCCcccceEEEEec-CeeEEEecc
Q 001101 719 YVGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDK 753 (1158)
Q Consensus 719 ~VG~kV~A~hp~~r~l~~GtVlavd~-~~YrV~Fdr 753 (1158)
.+|.+|+|+....+..|.|+|..+-. +.|.|.||-
T Consensus 10 ~iG~rVfArWsd~~yyYpG~V~~~~~~~~Y~V~FdD 45 (156)
T 1ssf_A 10 FVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDD 45 (156)
T ss_dssp STTCEEEECSSCSSEEEEEEEEECCTTTEEEEECTT
T ss_pred hhccEEEEEcCCCCcccccEEEEeccCCEEEEEEcC
Confidence 68999999988777888999999766 689999996
No 79
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=70.95 E-value=9.8 Score=35.51 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCCcccCCCccCCCEEEEEcCCCCCcccceEEEEec-CeeEEEeccCCCc-eeEeccc
Q 001101 687 KLNQYRESVRNHYSELRSGTKEGLPTDLARPLYVGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDKRELG-IEFVQDI 764 (1158)
Q Consensus 687 kLE~~R~~IR~~q~~~~~~~~~~LP~dIP~PL~VG~kV~A~hp~~r~l~~GtVlavd~-~~YrV~FdrpeLG-v~~VpD~ 764 (1158)
+|+.--+.++++|... .| .+..+.+|+.|.|........|.+.|+.++. +.|.|.|-- .| ++.|+=.
T Consensus 11 ~l~~L~~~m~~~y~~~-------~~--~~~~~~~G~~c~a~~~~d~~wyRA~V~~~~~~~~~~V~fvD--yGn~e~v~~~ 79 (110)
T 2diq_A 11 QLDKLVNEMTQHYENS-------VP--EDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVD--FGDNGDCPLK 79 (110)
T ss_dssp HHHHHHHHHHHHHTTS-------CC--CCCCCCTTCEEEECCTTTCSCEEEEECCCCSSSCEEEEETT--TCCEEEECGG
T ss_pred HHHHHHHHHHHHHccC-------CC--CCCCCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEe--CCCeEEEehH
Confidence 3555566666666532 12 2456789999999887667899999999987 789999984 54 4667666
Q ss_pred ccccCC
Q 001101 765 DCMPLN 770 (1158)
Q Consensus 765 dvmp~~ 770 (1158)
++.++.
T Consensus 80 ~Lr~l~ 85 (110)
T 2diq_A 80 DLRALR 85 (110)
T ss_dssp GCEECC
T ss_pred HhhcCc
Confidence 666543
No 80
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=70.89 E-value=18 Score=32.78 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCCcccCCCccCCCEEEEEcCCCCCcccceEEEEec-CeeEEEeccCCCceeEecccc
Q 001101 687 KLNQYRESVRNHYSELRSGTKEGLPTDLARPLYVGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDKRELGIEFVQDID 765 (1158)
Q Consensus 687 kLE~~R~~IR~~q~~~~~~~~~~LP~dIP~PL~VG~kV~A~hp~~r~l~~GtVlavd~-~~YrV~FdrpeLGv~~VpD~d 765 (1158)
+||.-=..++++|... .| -+..+.+|+.|.|..+.....|.+.|+.+.. ..+.|.|--=| .++.|+=.+
T Consensus 6 ~Le~Lm~~m~~~y~~~-------~~--~~~~~~~G~~c~a~~~~d~~wyRA~I~~~~~~~~~~V~fvDyG-n~e~v~~~~ 75 (94)
T 3fdr_A 6 QLDKLVNEMTQHYENS-------VP--EDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFG-DNGDCPLKD 75 (94)
T ss_dssp HHHHHHHHHHHHHTTC-------CC--CCCCCCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEEETTTC-CEEEECGGG
T ss_pred HHHHHHHHHHHHHhcC-------CC--CCCCCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEcCC-CeEEEEHHH
Confidence 4555556667777532 13 2346789999999987777889999999987 48999998433 357776666
Q ss_pred cccC
Q 001101 766 CMPL 769 (1158)
Q Consensus 766 vmp~ 769 (1158)
+.++
T Consensus 76 lr~l 79 (94)
T 3fdr_A 76 LRAL 79 (94)
T ss_dssp CEEC
T ss_pred hhhc
Confidence 6544
No 81
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=67.52 E-value=8.8 Score=34.45 Aligned_cols=55 Identities=16% Similarity=0.095 Sum_probs=42.4
Q ss_pred CCCccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEeccCCCceeEecccccccCC
Q 001101 715 ARPLYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDKRELGIEFVQDIDCMPLN 770 (1158)
Q Consensus 715 P~PL~VG~kV~A~hp~~r~l~~GtVlavd~--~~YrV~FdrpeLGv~~VpD~dvmp~~ 770 (1158)
...+.+|+.|.|+.......|.++|+.++. ..|.|.|.-=| .++.|+=.++.|+.
T Consensus 15 ~~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYG-N~e~V~~~~Lr~l~ 71 (77)
T 3pnw_C 15 AKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYG-NYEEVLLSNIKPIQ 71 (77)
T ss_dssp HTTCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTC-CEEEEEGGGEECC-
T ss_pred cCCCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCC-CeEEEeHHHeEECC
Confidence 345889999999987666789999999986 58999998533 35777766776654
No 82
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=64.87 E-value=7.2 Score=37.18 Aligned_cols=40 Identities=23% Similarity=0.430 Sum_probs=32.4
Q ss_pred ccCCCccCCCEEEEEcCC---CCCcccceEEEEec---------CeeEEEec
Q 001101 713 DLARPLYVGQRIIAVHPR---TREICDGSVLTVEH---------SRYRVQFD 752 (1158)
Q Consensus 713 dIP~PL~VG~kV~A~hp~---~r~l~~GtVlavd~---------~~YrV~Fd 752 (1158)
++..+|.+|.+|.++|+. -.-+|.+.|+.|.. ..|.|-|.
T Consensus 15 ~~~~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~ 66 (101)
T 3m9q_A 15 DETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQ 66 (101)
T ss_dssp CCCCCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEET
T ss_pred cCCCcccCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeC
Confidence 456789999999999963 23689999999875 26999885
No 83
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=62.70 E-value=5.6 Score=42.30 Aligned_cols=50 Identities=26% Similarity=0.441 Sum_probs=36.6
Q ss_pred CccCCCEEEEEcCC-CC-CcccceEEEEec----CeeEEEeccCCCceeEeccccccc
Q 001101 717 PLYVGQRIIAVHPR-TR-EICDGSVLTVEH----SRYRVQFDKRELGIEFVQDIDCMP 768 (1158)
Q Consensus 717 PL~VG~kV~A~hp~-~r-~l~~GtVlavd~----~~YrV~FdrpeLGv~~VpD~dvmp 768 (1158)
-|.||+||+|.... ++ .+|.|.|..... ..|.|-||.. -..+|+--+|++
T Consensus 68 ~l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG--~~~Yv~~~~V~~ 123 (213)
T 3dlm_A 68 KLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDG--YASYVTQSELYP 123 (213)
T ss_dssp GCCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTS--CEEEECGGGEEE
T ss_pred EEeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCC--CcceecCceEEE
Confidence 48999999998754 33 789998887766 4899999962 236666555543
No 84
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=58.36 E-value=18 Score=33.48 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=40.6
Q ss_pred CCCCcccCCCccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEeccCCCceeEeccc---ccccCCC
Q 001101 708 EGLPTDLARPLYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDKRELGIEFVQDI---DCMPLNP 771 (1158)
Q Consensus 708 ~~LP~dIP~PL~VG~kV~A~hp~~r~l~~GtVlavd~--~~YrV~FdrpeLGv~~VpD~---dvmp~~p 771 (1158)
+.-|...+..|.||+||-|+.+... .+...|..|+. ..|+|.||.=.--...--|+ +++|+.+
T Consensus 10 ~~~~~~~~~~F~vGmkLEA~D~~~~-~~~a~i~~v~~~~~~v~VHfdGW~~~yDeWv~~dS~~I~P~g~ 77 (88)
T 2eqm_A 10 KKPPNRPGITFEIGARLEALDYLQK-WYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPLER 77 (88)
T ss_dssp TSCCSCSSCCCCSSCEEEEECTTSC-EEEEEEEEEETTTTEEEEEESSSTTTEEEEEETTSCCEECCCC
T ss_pred cCCCCCCcCcCCCCCEEEEEcCCCC-eeEEEEEEEeccCCEEEEEECCCCCcccEEeeCCCCcEecccc
Confidence 4445566778999999999975432 36777777775 79999999643223333322 4555544
No 85
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=57.17 E-value=11 Score=36.63 Aligned_cols=54 Identities=13% Similarity=0.315 Sum_probs=36.1
Q ss_pred cCCCccCCCEEEEEcCCC---CCcccceEEEEecC---------eeEEEeccCCC-ceeEecccccc
Q 001101 714 LARPLYVGQRIIAVHPRT---REICDGSVLTVEHS---------RYRVQFDKREL-GIEFVQDIDCM 767 (1158)
Q Consensus 714 IP~PL~VG~kV~A~hp~~---r~l~~GtVlavd~~---------~YrV~FdrpeL-Gv~~VpD~dvm 767 (1158)
+...|.+|.+|.++||.. .-||...|+.|... .|.|-|.-=.- =-+-|+.-.|+
T Consensus 16 ~k~~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~~WDEWV~~drll 82 (110)
T 3oa6_A 16 MKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVL 82 (110)
T ss_dssp --CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGEE
T ss_pred CCcccCCCCEEEEEecCCCCCcccEEEEEEEEEeccCCcCCcccEEEEEECCcCcchhhccChhhhh
Confidence 466899999999999763 36799999988641 48888872110 12555555554
No 86
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=56.58 E-value=46 Score=33.57 Aligned_cols=53 Identities=15% Similarity=0.031 Sum_probs=41.5
Q ss_pred CccCCCEEEEEcCCCCCcccceEEEEecCeeEEEeccCCCceeEecccccccCC
Q 001101 717 PLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFDKRELGIEFVQDIDCMPLN 770 (1158)
Q Consensus 717 PL~VG~kV~A~hp~~r~l~~GtVlavd~~~YrV~FdrpeLGv~~VpD~dvmp~~ 770 (1158)
.+.+|+.|.|........|.|.|+.+..++|.|.|--=| .++.|+-.++.++.
T Consensus 51 ~~~~g~~c~a~~~~d~~wyRa~V~~v~~~~~~V~~vDyG-~~~~v~~~~l~~l~ 103 (218)
T 2wac_A 51 TPKRGDLVAAQFTLDNQWYRAKVERVQGSNATVLYIDYG-NKETLPTNRLAALP 103 (218)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEEETTEEEEEETTTC-CEEEEEGGGEEECC
T ss_pred cCCcCCEEEEEECCCCeEEEEEEEEecCCeEEEEEEecC-CeEEEchHHcccCC
Confidence 367999999998766678999999999899999997422 34677766666554
No 87
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=48.62 E-value=26 Score=33.67 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=43.0
Q ss_pred CCCccCCCEEEEEcCCC-CCcccceEEEEecCeeEEEeccCCCceeEeccc---ccccCCC
Q 001101 715 ARPLYVGQRIIAVHPRT-REICDGSVLTVEHSRYRVQFDKRELGIEFVQDI---DCMPLNP 771 (1158)
Q Consensus 715 P~PL~VG~kV~A~hp~~-r~l~~GtVlavd~~~YrV~FdrpeLGv~~VpD~---dvmp~~p 771 (1158)
+..|.+|.|+-|+.+.. ..++..+|..|+....+|.||--+--..+.-|+ +|.|+.+
T Consensus 11 ~~~F~~GMKLEAvD~~~p~~icvATV~~v~g~rl~v~fDGw~~~~D~W~~~dSpdIhPVGW 71 (107)
T 1wjq_A 11 PHGFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVGW 71 (107)
T ss_dssp SSSCCSSCEEEEECTTCTTCEEEEEEEEECSSCEEEECSSSCGGGCEEECTTCSSCEETTH
T ss_pred cccCCCCCEEEEEcCCCCCcEEeEEEEEecCCEEEEEeCCCCCcCCEEEECCCCCcccCcH
Confidence 56799999999998864 478999999999999999999644334455444 3444444
No 88
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=47.55 E-value=10 Score=34.24 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=31.0
Q ss_pred CCccCCCEEEEEcCC--CCCcccceEEEEecC----eeEEEec
Q 001101 716 RPLYVGQRIIAVHPR--TREICDGSVLTVEHS----RYRVQFD 752 (1158)
Q Consensus 716 ~PL~VG~kV~A~hp~--~r~l~~GtVlavd~~----~YrV~Fd 752 (1158)
.+|.+|++|.++++. ...+|.+.|+.++.. .|.|-|.
T Consensus 4 ~~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~ 46 (76)
T 2lcc_A 4 EPCLTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYY 46 (76)
T ss_dssp CCSSTTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEET
T ss_pred cccCCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeC
Confidence 378999999999873 357899999998872 6999998
No 89
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=52.47 E-value=4.1 Score=39.76 Aligned_cols=42 Identities=21% Similarity=0.348 Sum_probs=34.2
Q ss_pred ccCCCccCCCEEEEEcCCCCCcccceEEEEec-CeeEEEeccCC
Q 001101 713 DLARPLYVGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDKRE 755 (1158)
Q Consensus 713 dIP~PL~VG~kV~A~hp~~r~l~~GtVlavd~-~~YrV~Fdrpe 755 (1158)
.|--+|.||+.|.+.+|. ..+..|+|.-+-. ..|.|-||-.+
T Consensus 52 ~ikG~l~vG~~ve~~~~~-~~~~~~~I~~i~D~S~YtVVFdDGD 94 (118)
T 2lcd_A 52 QVKGPLRVGAIVETRTSD-GSFQEAIISKLTDASWYTVVFDDGD 94 (118)
Confidence 344599999999999985 4788899988755 78999999633
No 90
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=42.78 E-value=35 Score=36.73 Aligned_cols=49 Identities=16% Similarity=0.315 Sum_probs=38.4
Q ss_pred CCccCCCEEEEEcCCC-CCcccceEEEEecCeeEEEeccCCCceeEeccc
Q 001101 716 RPLYVGQRIIAVHPRT-REICDGSVLTVEHSRYRVQFDKRELGIEFVQDI 764 (1158)
Q Consensus 716 ~PL~VG~kV~A~hp~~-r~l~~GtVlavd~~~YrV~FdrpeLGv~~VpD~ 764 (1158)
-.|.||.||-|+.+.. .-|+..+|..|....++|.||.-+-...+.-|+
T Consensus 170 ~~F~~GmKLEavD~~~p~~icvATV~~v~g~rl~v~fDgw~~~~D~W~~~ 219 (243)
T 2biv_A 170 NNFKVGMKLEAIDKKNPYLICPATIGDVKGDEVHITFDGWSGAFDYWCKY 219 (243)
T ss_dssp CCCCTTCEEEEECTTSTTCEEEEEEEEEETTEEEEEETTSCGGGCEEEET
T ss_pred ccccCCCEEEEEccCCCCeEEEEEEEEecCCEEEEEECCCCCcCCEEEeC
Confidence 4899999999998864 578999999999999999999644233334333
No 91
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=42.33 E-value=25 Score=34.08 Aligned_cols=40 Identities=18% Similarity=0.477 Sum_probs=30.7
Q ss_pred ccCCCccCCCEEEEEcCC---CCCcccceEEEEec---------CeeEEEec
Q 001101 713 DLARPLYVGQRIIAVHPR---TREICDGSVLTVEH---------SRYRVQFD 752 (1158)
Q Consensus 713 dIP~PL~VG~kV~A~hp~---~r~l~~GtVlavd~---------~~YrV~Fd 752 (1158)
-...+|.+|.+|.++|+. ..-+|...|+.|+. ..|.|.|.
T Consensus 15 ~~~~~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~~g~~~~~Y~VHY~ 66 (110)
T 3m9p_A 15 GMKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFN 66 (110)
T ss_dssp ---CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEET
T ss_pred CCCCcccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCcccccceEEEEEEC
Confidence 356789999999999974 34789999999865 25999985
No 92
>1y71_A Kinase-associated protein B; structural genomics, midwest CE structural genomics, MCSG, protein structure initiative, PS unknown function; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=40.84 E-value=22 Score=35.28 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=30.1
Q ss_pred CccCCCEEEEEcCCCCCcccceEEEEecCeeEEEec
Q 001101 717 PLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFD 752 (1158)
Q Consensus 717 PL~VG~kV~A~hp~~r~l~~GtVlavd~~~YrV~Fd 752 (1158)
-+.+|+.|+++|-. |.|.|.|....++.|.|+-.
T Consensus 7 ~~~~g~~v~~~yKT--G~YigeI~e~~~~~~lVkVl 40 (130)
T 1y71_A 7 TFEIGEIVTGIYKT--GKYIGEVTNSRPGSYVVKVL 40 (130)
T ss_dssp CCCTTCEEEEEETT--EEEEEEEEEEETTEEEEEEE
T ss_pred cCCccceeEEEEec--ceeEEEEEeecCCeEEEEEE
Confidence 36899999999766 89999999999999999864
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=39.72 E-value=29 Score=38.66 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCC----ChHHHH------------HHHhcchHHHHHHH
Q 001101 44 GPQWSKEELERFYEAYRKYGK----DWKKIA------------AAVRNRTAEMVEAL 84 (1158)
Q Consensus 44 ~~~Ws~eEh~rF~ea~r~~Gk----~Wkkva------------~~v~tRt~~~v~s~ 84 (1158)
|--||+||+..+|=.|.+||- .|.+|- -++.+||..+|..+
T Consensus 212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR 268 (304)
T 1ofc_X 212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR 268 (304)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence 447999999999999999998 599997 36679999999776
No 94
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=38.87 E-value=10 Score=35.94 Aligned_cols=30 Identities=23% Similarity=0.503 Sum_probs=25.9
Q ss_pred chHHHHHhhcCCCCCCccchhhHHHHHhhc
Q 001101 641 REFVEYLDHVGLSHVPRLTRVEWGVIRSSL 670 (1158)
Q Consensus 641 neF~~~L~~~~l~~~~rLtR~EW~~IRr~m 670 (1158)
+++..+..+.|-..+|.=+-.=|..||..+
T Consensus 61 ~~L~~~~~~~g~~~ip~~~f~~W~lIrd~L 90 (94)
T 1bax_A 61 DCFQDYYNTFGPEKVPVTAFSYWNLIKELI 90 (94)
T ss_pred HHHHHHHHHcCCCcCCcchHHHHHHHHHHh
Confidence 778888888888888988999999999876
No 95
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=38.55 E-value=27 Score=34.47 Aligned_cols=39 Identities=10% Similarity=0.256 Sum_probs=31.7
Q ss_pred ccCCCccCCCEEEEEcCCCCCcccceEEEEec------CeeEEEec
Q 001101 713 DLARPLYVGQRIIAVHPRTREICDGSVLTVEH------SRYRVQFD 752 (1158)
Q Consensus 713 dIP~PL~VG~kV~A~hp~~r~l~~GtVlavd~------~~YrV~Fd 752 (1158)
....+|.+|++|.++|+ ...+|.+.|+.+.. ..|.|.|.
T Consensus 8 ~~~~~~~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~ 52 (133)
T 1wgs_A 8 EPEVTVEIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYV 52 (133)
T ss_dssp CCCCCCCTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECT
T ss_pred CcccccCCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEecc
Confidence 44568999999999997 34689999999874 26999987
No 96
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=38.36 E-value=44 Score=36.45 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=43.4
Q ss_pred CCCccCCCEEEEEcCC-CCCcccceEEEEecCeeEEEeccCCCceeEecccc---cccCCC
Q 001101 715 ARPLYVGQRIIAVHPR-TREICDGSVLTVEHSRYRVQFDKRELGIEFVQDID---CMPLNP 771 (1158)
Q Consensus 715 P~PL~VG~kV~A~hp~-~r~l~~GtVlavd~~~YrV~FdrpeLGv~~VpD~d---vmp~~p 771 (1158)
...|.+|.|+-|+.+. ...|+..+|..|.....+|.||.-+-...+.-|++ |.|+.+
T Consensus 141 ~~~F~vGMKLEavD~~np~~icvATV~~v~g~rl~v~fDGw~~~~D~W~~~~Sp~I~PvGW 201 (265)
T 2r58_A 141 ENLFKVGQKLEAVDKKNPQLICCATVDAIKDDQIHVTFDGWRGAFDYWCNYRSRDIFPAGW 201 (265)
T ss_dssp SCCCCTTCEEEEECTTSTTCEEEEEEEEEETTEEEEEETTSCGGGCEEEETTCTTEECTTH
T ss_pred ccccccCcEEEeccCCCCCCEEEEEEEEecCCEEEEEeCCCCCcCCEEEECCCCCeecCch
Confidence 4479999999999875 45789999999999999999996554445555553 444444
No 97
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=43.89 E-value=6.9 Score=35.24 Aligned_cols=39 Identities=18% Similarity=0.390 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHcCC---ChHHHHHHHhcchHHHHHHHH
Q 001101 46 QWSKEELERFYEAYRKYGK---DWKKIAAAVRNRTAEMVEALF 85 (1158)
Q Consensus 46 ~Ws~eEh~rF~ea~r~~Gk---~Wkkva~~v~tRt~~~v~s~y 85 (1158)
.||.||=.--|.++++-|- -|..||..+ +||..||.-.|
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF 57 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERF 57 (70)
Confidence 7999999999999999998 899999999 89999997653
No 98
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=36.11 E-value=38 Score=37.87 Aligned_cols=51 Identities=31% Similarity=0.413 Sum_probs=40.9
Q ss_pred CCCccCCCEEEEEcCC-CCCcccceEEEEecCeeEEEeccCCCceeEecccc
Q 001101 715 ARPLYVGQRIIAVHPR-TREICDGSVLTVEHSRYRVQFDKRELGIEFVQDID 765 (1158)
Q Consensus 715 P~PL~VG~kV~A~hp~-~r~l~~GtVlavd~~~YrV~FdrpeLGv~~VpD~d 765 (1158)
+..|.||.|+-|+-+. ...|+..||..|.....+|.||.-+-...++-|+|
T Consensus 250 ~~~F~~gmKLEavD~~~p~~ic~AtV~~v~~~~l~v~fDgw~~~~d~w~~~d 301 (331)
T 1oz2_A 250 PHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDAD 301 (331)
T ss_dssp CCCCCTTCEEEEECSSSTTCEEEEEEEEECSSEEEEEETTBCGGGCEEEETT
T ss_pred ccccccCceeEeecccCCCcEEeeEEEEEcCCEEEEEeCCCCCcCCEEEECC
Confidence 5689999999999875 45789999999999999999995443445566554
No 99
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=33.24 E-value=43 Score=31.92 Aligned_cols=36 Identities=14% Similarity=0.391 Sum_probs=30.0
Q ss_pred CCCccCCCEEEEEcCCCCCcccceEEEEec----CeeEEEec
Q 001101 715 ARPLYVGQRIIAVHPRTREICDGSVLTVEH----SRYRVQFD 752 (1158)
Q Consensus 715 P~PL~VG~kV~A~hp~~r~l~~GtVlavd~----~~YrV~Fd 752 (1158)
..+|.+|++|.+++ ...+|...|+.|.. ..|.|-|.
T Consensus 20 ~~~f~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~ 59 (102)
T 2f5k_A 20 KPKFQEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYS 59 (102)
T ss_dssp SCSCCTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEET
T ss_pred CcccCCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeC
Confidence 45799999999998 34789999999885 36888887
No 100
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=30.94 E-value=53 Score=30.70 Aligned_cols=35 Identities=9% Similarity=0.189 Sum_probs=28.8
Q ss_pred CCccCCCEEEEEcCCCCCcccceEEEEec----CeeEEEec
Q 001101 716 RPLYVGQRIIAVHPRTREICDGSVLTVEH----SRYRVQFD 752 (1158)
Q Consensus 716 ~PL~VG~kV~A~hp~~r~l~~GtVlavd~----~~YrV~Fd 752 (1158)
..|.+|++|.++| ...+|.+.|+.+.. ..|-|.|.
T Consensus 22 ~~~~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~ 60 (92)
T 2ro0_A 22 DDIIIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYV 60 (92)
T ss_dssp TSCCTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEET
T ss_pred ccccCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeC
Confidence 4699999999997 34689999999886 36888776
No 101
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=30.32 E-value=1.6e+02 Score=29.79 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=40.5
Q ss_pred CccCCCEEEEEcCCCCCcccceEEEEec-CeeEEEeccCCCc-eeEecccccccCC
Q 001101 717 PLYVGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDKRELG-IEFVQDIDCMPLN 770 (1158)
Q Consensus 717 PL~VG~kV~A~hp~~r~l~~GtVlavd~-~~YrV~FdrpeLG-v~~VpD~dvmp~~ 770 (1158)
.+.+|+-+.|.++....-|.|.|+.+.. +.+.|.|-- .| ++.|+=.++.++.
T Consensus 65 ~~~~G~~c~a~~~~d~~wyRa~V~~~~~~~~~~V~~vD--yG~~~~v~~~~l~~l~ 118 (201)
T 4b9w_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVD--YGNVEEVTTDQLQAIL 118 (201)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEEETT--TCCEEEECGGGEEECC
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEc--cCCEEEEEHHHhccCh
Confidence 4578999999988777789999999976 579999974 55 4677666666553
No 102
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=30.10 E-value=38 Score=36.15 Aligned_cols=58 Identities=21% Similarity=0.490 Sum_probs=37.8
Q ss_pred ccCCCEEEEEcCCCCCcccceEEEEec----CeeEEEeccCCCceeEecccccccC--CC-CCCCcccc
Q 001101 718 LYVGQRIIAVHPRTREICDGSVLTVEH----SRYRVQFDKRELGIEFVQDIDCMPL--NP-LENMPASL 779 (1158)
Q Consensus 718 L~VG~kV~A~hp~~r~l~~GtVlavd~----~~YrV~FdrpeLGv~~VpD~dvmp~--~p-lEnmP~sl 779 (1158)
|.||++|.|+- ++..-+.|+|+.+-+ ..|.|+|+..+ ..+|+ ...+.. +| ++.||.-.
T Consensus 9 l~Vg~~vlg~k-~~~~W~rg~v~~I~~~~~g~~YkVkF~~~g--~~ivs-~~hiA~~~~p~~~~l~vG~ 73 (213)
T 3dlm_A 9 LIVSMRILGKK-RTKTWHKGTLIAIQTVGPGKKYKVKFDNKG--KSLLS-GNHIAYDYHPPADKLYVGS 73 (213)
T ss_dssp EETTCEEEEEC-TTSBEEEEEEEEEEEETTEEEEEEEESSSC--EEEEC-GGGEEESSCCCGGGCCTTC
T ss_pred EEEccEEEEEe-cCCcEEEEEEEEEEECCCCeEEEEEEcCCC--CEEee-cceEEEecCCCccEEeEEE
Confidence 67999999985 335669999998665 47999999633 33333 432222 34 35666554
No 103
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.73 E-value=34 Score=31.77 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=31.4
Q ss_pred CCCccCCCEEEEEcC---CCCCcccceEEEEec----CeeEEEecc
Q 001101 715 ARPLYVGQRIIAVHP---RTREICDGSVLTVEH----SRYRVQFDK 753 (1158)
Q Consensus 715 P~PL~VG~kV~A~hp---~~r~l~~GtVlavd~----~~YrV~Fdr 753 (1158)
...|.+|++|.++|+ ....+|.+.|+.+.. ..|-|.|..
T Consensus 7 ~~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g 52 (87)
T 2eko_A 7 GGEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYID 52 (87)
T ss_dssp SCSCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECS
T ss_pred cccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCC
Confidence 357899999999995 345789999999987 368888873
No 104
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=29.63 E-value=1.7e+02 Score=30.35 Aligned_cols=74 Identities=19% Similarity=0.164 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCCcccCCCccCCCEEEEEcCCCCCcccceEEEEec-CeeEEEeccCCCc-eeEeccc
Q 001101 687 KLNQYRESVRNHYSELRSGTKEGLPTDLARPLYVGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDKRELG-IEFVQDI 764 (1158)
Q Consensus 687 kLE~~R~~IR~~q~~~~~~~~~~LP~dIP~PL~VG~kV~A~hp~~r~l~~GtVlavd~-~~YrV~FdrpeLG-v~~VpD~ 764 (1158)
+|+.--+.+..+|... ..+| .+....+|+.+.|.+. ....|.|.|+.+.. ++|.|.|-- .| ++.|+-.
T Consensus 42 ~l~~l~~~l~~~~~~~-----~~~~--~~~~~~~G~~c~a~~~-d~~wyRa~V~~~~~~~~~~V~~vD--yGn~~~v~~~ 111 (246)
T 2hqx_A 42 QFQKLMENMRNDIASH-----PPVE--GSYAPRRGEFCIAKFV-DGEWYRARVEKVESPAKIHVFYID--YGNREVLPST 111 (246)
T ss_dssp HHHHHHHHHHHHHHHS-----CCCT--TTCCCCTTCEEEEECT-TSCEEEEEEEEEEETTEEEEEETT--TCCEEEECGG
T ss_pred HHHHHHHHHHHHHhhC-----CCCC--CCCCCCCCCEEEEEcC-CCCEEEEEEEEEcCCCeEEEEEEe--CCCeEEEeHH
Confidence 4555555666555431 1122 1345679999999887 55789999999985 899999984 44 4677666
Q ss_pred ccccCC
Q 001101 765 DCMPLN 770 (1158)
Q Consensus 765 dvmp~~ 770 (1158)
++.++.
T Consensus 112 ~lr~l~ 117 (246)
T 2hqx_A 112 RLGTLS 117 (246)
T ss_dssp GEECCC
T ss_pred HhhcCC
Confidence 666554
No 105
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A
Probab=28.56 E-value=74 Score=35.52 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=41.8
Q ss_pred cCCCccCCCEEEEEcCC-CCCcccceEEEEecCeeEEEeccCCCceeEeccccc
Q 001101 714 LARPLYVGQRIIAVHPR-TREICDGSVLTVEHSRYRVQFDKRELGIEFVQDIDC 766 (1158)
Q Consensus 714 IP~PL~VG~kV~A~hp~-~r~l~~GtVlavd~~~YrV~FdrpeLGv~~VpD~dv 766 (1158)
.+..|.+|.|+-|+-+. ...|+.+||..|....-+|.||.-+--..+.-|++-
T Consensus 244 ~~~~F~~gmkLEAvD~~~p~licvATV~~v~g~~l~v~fDgw~~~~d~w~~~~S 297 (324)
T 3ut1_A 244 PPHGFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADS 297 (324)
T ss_dssp CCCCCCTTCEEEEECSSSTTCEEEEEEEEECSSEEEEEETTSCGGGCEEEETTC
T ss_pred ccccCCCCCeeeccCCCCCCceeEEEEEEecCCEEEEEeCCCCCCCCEEEeCCC
Confidence 35689999999999875 458899999999999999999965433455666543
No 106
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=28.41 E-value=1.2e+02 Score=31.32 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=40.5
Q ss_pred CccCCCEEEEEcCCCCCcccceEEEEec-CeeEEEeccCCCc-eeEecccccccCC
Q 001101 717 PLYVGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDKRELG-IEFVQDIDCMPLN 770 (1158)
Q Consensus 717 PL~VG~kV~A~hp~~r~l~~GtVlavd~-~~YrV~FdrpeLG-v~~VpD~dvmp~~ 770 (1158)
.+.+|+-+.|.++....-|.|.|+.+.+ ..|.|.|-- .| .+.|+=.++.++.
T Consensus 65 ~~~~G~~c~a~~~~d~~WyRa~V~~~~~~~~~~V~~vD--yGn~~~v~~~~l~~l~ 118 (226)
T 4b9x_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVD--YGNVEEVTTDQLQAIL 118 (226)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSSSEEEEECTT--TCCEEEEEGGGEECCC
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEe--cCCEEEEEHHHhccCh
Confidence 4578999999988767789999999976 579999974 54 4677766666554
No 107
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=25.78 E-value=81 Score=34.40 Aligned_cols=65 Identities=18% Similarity=0.314 Sum_probs=45.2
Q ss_pred cCCCCcccCCCccCCCEEEEEcCCC-CCcccceEEEEecCeeEEEeccCCCceeEeccc---ccccCCC
Q 001101 707 KEGLPTDLARPLYVGQRIIAVHPRT-REICDGSVLTVEHSRYRVQFDKRELGIEFVQDI---DCMPLNP 771 (1158)
Q Consensus 707 ~~~LP~dIP~PL~VG~kV~A~hp~~-r~l~~GtVlavd~~~YrV~FdrpeLGv~~VpD~---dvmp~~p 771 (1158)
+.+.|..-.--|.||.|+-|+.|.. ..++..||..|....++|.||-.+-.-.+.-++ +|.|+.+
T Consensus 24 Fk~~~~~~~~~F~vGMKLEavDp~~~~~icvATV~~v~g~~l~l~~DG~d~~~DfW~~~~S~~I~PvGw 92 (265)
T 2r58_A 24 FKQAQNPPNNDFKIGMKLEALDPRNVTSTCIATVVGVLGSRLRLRLDGSDSQNDFWRLVDSTEIHAIGH 92 (265)
T ss_dssp SSSCSSCCCCCCCTTCEEEEEETTEEEEEEEEEEEEEETTEEEEEETTSCSSCCEEEETTCTTEECTTH
T ss_pred hcCCCCCCccccccCCEeEEecCCCCCCEEEEEEEEEeCCEEEEEeCCCCCcCCEeEeCCCCCeecccc
Confidence 3444432345699999999999874 378999999999999999999644333343333 4555544
No 108
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=25.45 E-value=87 Score=34.99 Aligned_cols=57 Identities=26% Similarity=0.320 Sum_probs=43.3
Q ss_pred CCCccCCCEEEEEcCC-CCCcccceEEEEecCeeEEEeccCCCceeEeccc---ccccCCC
Q 001101 715 ARPLYVGQRIIAVHPR-TREICDGSVLTVEHSRYRVQFDKRELGIEFVQDI---DCMPLNP 771 (1158)
Q Consensus 715 P~PL~VG~kV~A~hp~-~r~l~~GtVlavd~~~YrV~FdrpeLGv~~VpD~---dvmp~~p 771 (1158)
+..|.||.|+-|+.|. ...|+..||..|....++|.||--+-...+.-|+ +|.|+.+
T Consensus 146 ~~~F~vGmKLEavD~~np~~icvATV~~v~g~r~~v~~Dg~~~~~D~w~~~~S~~I~PVGw 206 (331)
T 1oz2_A 146 PLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGW 206 (331)
T ss_dssp CTTCCTTCEEEEECTTSTTCEEEEEEEEEETTEEEEEETTSCGGGCEEECTTCTTEECTTH
T ss_pred ccccccccEEEeccCCCCCcEEEEEEEEeeCCEEEEEeCCCCCccCEEEecCCCCccCCch
Confidence 4679999999999986 4589999999999999999999644333444444 4555544
No 109
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=24.28 E-value=58 Score=32.55 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=25.1
Q ss_pred ccCCCccCCCEEEEEcCCCCCcccceEEEEec
Q 001101 713 DLARPLYVGQRIIAVHPRTREICDGSVLTVEH 744 (1158)
Q Consensus 713 dIP~PL~VG~kV~A~hp~~r~l~~GtVlavd~ 744 (1158)
++-.+|.+|.+|.|+|.. .||...|+.|..
T Consensus 5 ~~~~~f~~gekvl~~hg~--llYeAKVl~v~~ 34 (136)
T 2k3y_A 5 DLEQEFALGGRVLAFHGP--LMYEAKILKIWD 34 (136)
T ss_dssp GGGGSCCTTSEEEEECSS--CEEEEEEEEEEE
T ss_pred ccccccCCCCEEEEEECC--eeEEEEEEEEEe
Confidence 456789999999999943 489999998875
No 110
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=22.17 E-value=2.8e+02 Score=27.48 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=32.5
Q ss_pred CccCCCEEEEEcCCCCCcccceEEEEecC-eeEEEecc
Q 001101 717 PLYVGQRIIAVHPRTREICDGSVLTVEHS-RYRVQFDK 753 (1158)
Q Consensus 717 PL~VG~kV~A~hp~~r~l~~GtVlavd~~-~YrV~Fdr 753 (1158)
...+|+.+.|.++.....|.|.|+.+..+ .|.|.|--
T Consensus 47 ~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~~~~V~fvD 84 (169)
T 3ntk_A 47 DLKEGALCVAQFPEDEVFYRAQIRKVLDDGKCEVHFID 84 (169)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSTTCEEEEETT
T ss_pred CCCCCCEEEEEECCCCcEEEEEEEEECCCCEEEEEEEe
Confidence 67899999999887778899999999984 69999974
No 111
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A
Probab=21.92 E-value=96 Score=34.64 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=42.0
Q ss_pred CCCccCCCEEEEEcCCC-CCcccceEEEEecCeeEEEeccCCCceeEeccc---ccccCCC
Q 001101 715 ARPLYVGQRIIAVHPRT-REICDGSVLTVEHSRYRVQFDKRELGIEFVQDI---DCMPLNP 771 (1158)
Q Consensus 715 P~PL~VG~kV~A~hp~~-r~l~~GtVlavd~~~YrV~FdrpeLGv~~VpD~---dvmp~~p 771 (1158)
+..|.||.|+-|+.|.. ..|+..||..|.....+|.||--+-...+.-|+ +|.|+.+
T Consensus 141 ~~~F~vGMKLEavDp~~p~~icvATV~~V~g~~l~v~~Dg~~~~~d~w~~~~Sp~I~PVGW 201 (324)
T 3ut1_A 141 PSGFRVGMKLEAVDKKNPSFICVATVTDMVDNRFLVHFDNWDESYDYWCEASSPHIHPVGW 201 (324)
T ss_dssp CCSCCTTCEEEEEETTEEEEEEEEEEEEEETTEEEEEETTSCGGGCEEECTTCTTEECTTH
T ss_pred ccccccCCEEEEecCCCCCcEEEEEEEEEECCEEEEEECCCCCcCCEEEECCCCCcccCcH
Confidence 45799999999998864 468999999999999999999533233344444 3555544
No 112
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=21.16 E-value=1.1e+02 Score=30.61 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=44.2
Q ss_pred CCccCCCEEEEEcCCCCCcccceEEEEecCeeEEEeccCCCceeEecccccccC
Q 001101 716 RPLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFDKRELGIEFVQDIDCMPL 769 (1158)
Q Consensus 716 ~PL~VG~kV~A~hp~~r~l~~GtVlavd~~~YrV~FdrpeLGv~~VpD~dvmp~ 769 (1158)
..+.+|++|..--+. .....|+|..|+.+.+.|-|+-|=-|..+.-|++|+.+
T Consensus 83 ~~~~~G~~~~~~~~~-G~~~~~~V~~v~~~~v~vD~NHPLAGk~L~F~vev~~v 135 (158)
T 3cgm_A 83 AEVVPGAQFYAQDME-GNPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEVVKV 135 (158)
T ss_dssp SCCCTTCEEEEEETT-TEEEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEE
T ss_pred CCCccCCEEEEECCC-CCEEEEEEEEECCCEEEEeCCccccCCEEEEEEEEEEe
Confidence 468999999865443 24677999999999999999999889999999999743
No 113
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.90 E-value=3.9e+02 Score=25.65 Aligned_cols=61 Identities=10% Similarity=0.086 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001101 868 ALSHLRHALDKKEAIVSELRCMNDEILENQKDGDNSFKDSELFKKHYAAILLQLNDINEQVASALFCLRQR 938 (1158)
Q Consensus 868 aL~eLsKiLd~Ke~lV~eLr~MN~EAE~~~~~G~~s~~~se~FQrrYA~vVlqLe~vN~~l~~aL~~LRqr 938 (1158)
-+.+|.+.+..-+.=|..|+.+|...|... .+...+|..-+-++...-..++..|.++|+.
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l----------~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e 97 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAI----------ADAEQRGELALKDARNKLAELEEALQKAKQD 97 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 377888889999999999999999998863 5677899988888888888888888888764
No 114
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=20.63 E-value=1.2e+02 Score=32.65 Aligned_cols=65 Identities=20% Similarity=0.360 Sum_probs=45.2
Q ss_pred cCCCCcccCCCccCCCEEEEEcCCC-CCcccceEEEEecCeeEEEeccCCCceeEeccc---ccccCCC
Q 001101 707 KEGLPTDLARPLYVGQRIIAVHPRT-REICDGSVLTVEHSRYRVQFDKRELGIEFVQDI---DCMPLNP 771 (1158)
Q Consensus 707 ~~~LP~dIP~PL~VG~kV~A~hp~~-r~l~~GtVlavd~~~YrV~FdrpeLGv~~VpD~---dvmp~~p 771 (1158)
+.+.+....--|.||.|+-|+.|.. ..++..||+.|.....+|.||-.+-.-.+.-++ +|.|+.+
T Consensus 52 F~~~~~~~~~~f~vGmKLEa~D~~~~~~~~vATV~~v~g~~l~l~~dG~d~~~DfW~~~~S~~I~PvGw 120 (243)
T 2biv_A 52 FRQSQIPPVNDFKVGMKLEARDPRNATSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVGT 120 (243)
T ss_dssp SSSCSSCCCCCCCTTCEEEEEETTEEEEEEEEEEEEEETTEEEEEETTSCSSSCEEEETTCTTEECTTH
T ss_pred HcCCCCCCcccccCCCEEEEecCCCCCcEEEEEEEEEeCCEEEEEECCCCCCCCEeecCCCCccccChh
Confidence 3444433345799999999999863 478999999999999999999654322333233 4555544
No 115
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=25.49 E-value=22 Score=32.72 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=29.7
Q ss_pred CCCccCCCEEEEEcCCCCCcccceEEEEec----CeeEEEec
Q 001101 715 ARPLYVGQRIIAVHPRTREICDGSVLTVEH----SRYRVQFD 752 (1158)
Q Consensus 715 P~PL~VG~kV~A~hp~~r~l~~GtVlavd~----~~YrV~Fd 752 (1158)
...|.+|.+|.++|.. .+|.+.|+.+.. ..|.|.|.
T Consensus 10 ~~~~~~Gekv~~~~~~--~~y~AkIl~i~~~~~~~~YyVHY~ 49 (85)
T 2lrq_A 10 NTLFVDGERVLCFHGP--LIYEAKVLKTKPDATPVEYYIHYA 49 (85)
Confidence 4579999999999854 679999999875 36888887
Done!