Query 001106
Match_columns 1157
No_of_seqs 358 out of 2545
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 11:20:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gai_A DNA topoisomerase I; zi 100.0 6E-143 2E-147 1303.3 50.1 626 348-1042 5-630 (633)
2 1mw9_X DNA topoisomerase I; de 100.0 2E-133 8E-138 1212.1 54.7 547 347-933 1-576 (592)
3 1i7d_A DNA topoisomerase III; 100.0 5E-130 2E-134 1192.1 49.5 574 349-982 1-634 (659)
4 4ddu_A Reverse gyrase; topoiso 100.0 1E-114 4E-119 1116.0 48.4 507 345-933 538-1102(1104)
5 1gku_B Reverse gyrase, TOP-RG; 100.0 3E-110 1E-114 1072.9 43.7 491 345-929 502-1051(1054)
6 2fcj_A Small toprim domain pro 96.0 0.024 8.4E-07 55.1 9.3 103 347-478 3-106 (119)
7 1vdd_A Recombination protein R 95.5 0.011 3.7E-07 63.1 4.9 107 349-479 80-196 (228)
8 2gai_A DNA topoisomerase I; zi 94.9 0.0062 2.1E-07 74.8 1.2 55 1027-1104 575-631 (633)
9 3vdp_A Recombination protein R 91.5 0.39 1.3E-05 50.9 7.8 107 349-477 94-210 (212)
10 1t6t_1 Putative protein; struc 83.0 0.95 3.3E-05 43.9 4.2 68 349-446 21-88 (118)
11 1tbx_A ORF F-93, hypothetical 81.1 0.67 2.3E-05 42.4 2.3 54 834-888 23-81 (99)
12 4aik_A Transcriptional regulat 78.7 2.4 8.4E-05 41.9 5.7 51 834-888 47-104 (151)
13 3g3z_A NMB1585, transcriptiona 69.8 3.4 0.00012 39.7 4.0 51 834-888 46-103 (145)
14 3nrv_A Putative transcriptiona 66.6 2.3 7.9E-05 41.0 2.1 52 833-888 54-112 (148)
15 3eco_A MEPR; mutlidrug efflux 65.8 3 0.0001 39.7 2.7 53 832-888 46-105 (139)
16 3f3x_A Transcriptional regulat 65.7 2.7 9.3E-05 40.4 2.4 50 835-888 52-108 (144)
17 3e6m_A MARR family transcripti 65.3 3.2 0.00011 40.9 2.8 49 836-888 70-125 (161)
18 1r7j_A Conserved hypothetical 64.5 2.5 8.4E-05 39.2 1.7 46 843-889 27-72 (95)
19 3deu_A Transcriptional regulat 64.3 4.5 0.00015 40.3 3.8 51 834-888 69-126 (166)
20 3jw4_A Transcriptional regulat 63.7 3.5 0.00012 39.9 2.7 53 832-888 56-115 (148)
21 2fbk_A Transcriptional regulat 62.3 5.8 0.0002 39.9 4.2 53 832-888 85-144 (181)
22 3kp7_A Transcriptional regulat 61.2 5.6 0.00019 38.5 3.7 51 834-888 52-111 (151)
23 3s2w_A Transcriptional regulat 60.0 5.1 0.00017 39.2 3.2 51 834-888 65-122 (159)
24 3bro_A Transcriptional regulat 59.5 6.6 0.00022 37.3 3.8 52 833-888 50-108 (141)
25 3bpv_A Transcriptional regulat 59.3 6.8 0.00023 37.0 3.9 51 834-888 44-101 (138)
26 3k0l_A Repressor protein; heli 58.1 6.2 0.00021 38.8 3.4 51 834-888 61-118 (162)
27 3nqo_A MARR-family transcripti 57.9 6.1 0.00021 40.3 3.4 52 833-888 57-115 (189)
28 3oop_A LIN2960 protein; protei 57.6 4.7 0.00016 38.6 2.4 50 835-888 53-109 (143)
29 3cdh_A Transcriptional regulat 57.5 9.2 0.00032 37.0 4.6 51 834-888 58-115 (155)
30 3boq_A Transcriptional regulat 57.3 6.4 0.00022 38.3 3.4 51 834-888 63-120 (160)
31 2hr3_A Probable transcriptiona 56.7 9.9 0.00034 36.3 4.6 51 834-888 51-108 (147)
32 2a61_A Transcriptional regulat 55.8 8 0.00027 36.8 3.7 51 834-888 48-105 (145)
33 3ech_A MEXR, multidrug resista 54.5 5.4 0.00019 38.2 2.3 51 834-888 52-109 (142)
34 2eth_A Transcriptional regulat 54.2 6.4 0.00022 38.3 2.8 51 834-888 59-116 (154)
35 3h0g_I DNA-directed RNA polyme 53.9 12 0.00041 35.8 4.6 32 964-999 5-36 (113)
36 2qq9_A Diphtheria toxin repres 53.4 19 0.00065 38.0 6.5 63 846-920 34-97 (226)
37 1twf_I B12.6, DNA-directed RNA 52.5 19 0.00067 34.8 5.8 32 964-999 5-36 (122)
38 2fbh_A Transcriptional regulat 51.8 9.7 0.00033 36.2 3.6 51 834-888 53-110 (146)
39 3bja_A Transcriptional regulat 51.0 8.3 0.00028 36.4 2.9 50 835-888 49-105 (139)
40 2fa5_A Transcriptional regulat 50.3 6.6 0.00023 38.3 2.2 51 834-888 64-121 (162)
41 4b8x_A SCO5413, possible MARR- 50.3 5.3 0.00018 39.1 1.5 50 835-888 53-109 (147)
42 4hbl_A Transcriptional regulat 50.1 6.8 0.00023 38.0 2.2 51 834-888 56-113 (149)
43 3fm5_A Transcriptional regulat 49.3 6 0.0002 38.3 1.6 51 834-888 55-112 (150)
44 1lj9_A Transcriptional regulat 48.4 3.4 0.00012 39.5 -0.3 51 834-888 44-101 (144)
45 2pg4_A Uncharacterized protein 47.9 6.2 0.00021 35.6 1.4 51 834-888 31-87 (95)
46 2qww_A Transcriptional regulat 47.7 9.8 0.00033 36.8 2.9 51 834-888 56-115 (154)
47 2x4h_A Hypothetical protein SS 47.6 11 0.00037 36.1 3.2 50 834-887 32-81 (139)
48 3u2r_A Regulatory protein MARR 46.7 6.9 0.00024 38.7 1.7 51 834-888 63-120 (168)
49 3bj6_A Transcriptional regulat 46.1 13 0.00045 35.7 3.5 51 834-888 55-112 (152)
50 2pex_A Transcriptional regulat 45.4 8.1 0.00028 37.4 1.9 50 834-887 62-118 (153)
51 3hsr_A HTH-type transcriptiona 44.9 8.7 0.0003 36.8 2.0 51 834-888 51-108 (140)
52 2rdp_A Putative transcriptiona 44.7 11 0.00037 36.2 2.7 51 834-888 57-114 (150)
53 1mw9_X DNA topoisomerase I; de 43.9 9.3 0.00032 46.6 2.5 55 813-868 263-318 (592)
54 1fx7_A Iron-dependent represso 43.1 37 0.0013 35.8 6.7 72 837-923 28-100 (230)
55 2frh_A SARA, staphylococcal ac 42.5 4.3 0.00015 38.7 -0.6 51 834-888 54-111 (127)
56 2bv6_A MGRA, HTH-type transcri 42.4 17 0.00059 34.4 3.7 51 834-888 52-109 (142)
57 3cjn_A Transcriptional regulat 41.6 11 0.00037 36.9 2.1 50 835-888 68-124 (162)
58 1s3j_A YUSO protein; structura 41.5 12 0.00042 36.0 2.5 50 835-888 53-109 (155)
59 2fxa_A Protease production reg 41.0 9.3 0.00032 39.8 1.6 52 835-890 64-122 (207)
60 2nyx_A Probable transcriptiona 39.4 13 0.00046 36.7 2.5 50 835-888 61-117 (168)
61 1jgs_A Multiple antibiotic res 38.8 11 0.00039 35.5 1.7 50 835-888 50-106 (138)
62 2gxg_A 146AA long hypothetical 37.9 16 0.00054 34.8 2.6 51 834-888 51-108 (146)
63 2qvo_A Uncharacterized protein 37.3 10 0.00035 34.3 1.1 51 834-888 31-85 (95)
64 2esh_A Conserved hypothetical 36.5 43 0.0015 31.6 5.4 52 834-885 27-91 (118)
65 1sfx_A Conserved hypothetical 34.9 32 0.0011 30.7 4.1 51 834-888 35-91 (109)
66 3tgn_A ADC operon repressor AD 34.8 18 0.00062 34.4 2.5 50 834-887 52-108 (146)
67 4fx0_A Probable transcriptiona 34.2 26 0.00087 34.3 3.5 51 833-887 52-108 (148)
68 2hzt_A Putative HTH-type trans 34.1 19 0.00066 33.3 2.5 51 835-888 29-86 (107)
69 2fbi_A Probable transcriptiona 33.2 13 0.00044 35.2 1.1 51 834-888 51-108 (142)
70 3bdd_A Regulatory protein MARR 32.4 20 0.00068 33.8 2.3 50 834-887 46-103 (142)
71 1qyp_A RNA polymerase II; tran 32.1 39 0.0013 28.1 3.7 33 963-998 15-52 (57)
72 3qt1_I DNA-directed RNA polyme 32.0 16 0.00054 36.1 1.5 33 963-999 24-56 (133)
73 3df8_A Possible HXLR family tr 31.9 21 0.00073 33.4 2.4 55 831-888 40-97 (111)
74 1z91_A Organic hydroperoxide r 31.2 14 0.00048 35.3 1.0 40 847-887 65-111 (147)
75 2h09_A Transcriptional regulat 30.7 28 0.00096 33.9 3.1 51 834-888 55-106 (155)
76 1i7d_A DNA topoisomerase III; 30.7 23 0.0008 43.6 3.1 55 813-868 271-327 (659)
77 4ddu_A Reverse gyrase; topoiso 30.5 24 0.00081 46.1 3.2 55 813-868 795-850 (1104)
78 1nui_A DNA primase/helicase; z 30.2 54 0.0019 35.0 5.6 75 348-445 150-224 (255)
79 2nnn_A Probable transcriptiona 28.5 16 0.00056 34.3 1.0 50 834-887 53-109 (140)
80 3ri2_A Transcriptional regulat 28.4 41 0.0014 32.4 3.8 50 837-886 37-95 (123)
81 2p8t_A Hypothetical protein PH 28.2 17 0.0006 38.2 1.1 55 837-895 34-88 (200)
82 1on2_A Transcriptional regulat 27.8 18 0.00061 34.7 1.1 50 834-887 23-73 (142)
83 1okr_A MECI, methicillin resis 27.7 10 0.00035 35.4 -0.6 54 834-888 25-84 (123)
84 3f8b_A Transcriptional regulat 27.3 42 0.0014 31.7 3.6 50 836-885 28-90 (116)
85 2riq_A Poly [ADP-ribose] polym 26.6 29 0.00099 35.3 2.4 30 963-999 78-111 (160)
86 4esf_A PADR-like transcription 26.6 41 0.0014 32.0 3.4 51 836-886 27-88 (117)
87 2wte_A CSA3; antiviral protein 26.3 19 0.00066 38.8 1.1 65 834-912 167-233 (244)
88 3hrs_A Metalloregulator SCAR; 26.1 20 0.00067 37.7 1.1 72 834-920 21-93 (214)
89 1pqv_S STP-alpha, transcriptio 24.0 79 0.0027 35.3 5.5 33 963-998 268-305 (309)
90 2fsw_A PG_0823 protein; alpha- 23.4 20 0.00069 33.1 0.5 39 850-888 52-97 (107)
91 1gku_B Reverse gyrase, TOP-RG; 22.8 36 0.0012 44.1 2.9 53 815-868 755-808 (1054)
92 1hsj_A Fusion protein consisti 22.8 18 0.00063 41.9 0.1 40 850-889 433-479 (487)
93 4esb_A Transcriptional regulat 22.7 54 0.0018 31.0 3.3 51 837-887 26-87 (115)
94 2xvc_A ESCRT-III, SSO0910; cel 22.3 53 0.0018 27.9 2.7 27 622-657 30-56 (59)
95 1xma_A Predicted transcription 22.2 47 0.0016 32.8 2.9 50 835-885 56-119 (145)
96 2fiy_A Protein FDHE homolog; F 22.2 79 0.0027 35.4 5.1 34 962-998 181-217 (309)
97 3cta_A Riboflavin kinase; stru 22.1 22 0.00076 37.4 0.5 45 844-889 35-83 (230)
98 1p4x_A Staphylococcal accessor 22.0 46 0.0016 35.8 3.1 42 847-889 61-109 (250)
99 3po3_S Transcription elongatio 21.8 96 0.0033 31.9 5.3 13 963-975 137-149 (178)
100 1yyv_A Putative transcriptiona 21.6 46 0.0016 32.2 2.7 39 850-888 62-107 (131)
101 3hrs_A Metalloregulator SCAR; 21.3 93 0.0032 32.4 5.2 51 620-679 23-73 (214)
102 3v7q_A Probable ribosomal prot 21.1 1.3E+02 0.0044 27.8 5.5 75 407-495 25-99 (101)
103 3l7w_A Putative uncharacterize 20.3 62 0.0021 30.0 3.2 50 837-887 26-84 (108)
No 1
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=100.00 E-value=5.7e-143 Score=1303.30 Aligned_cols=626 Identities=34% Similarity=0.475 Sum_probs=515.1
Q ss_pred CCeEEEEecchHHHHHHhhcCCCEEEEEeccccccccccCCCCCCCCCCcceEecccchHHHHHHHHHHhccCCeEEEcc
Q 001106 348 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILAS 427 (1157)
Q Consensus 348 ~k~LiIaEkPskAk~Ia~~LG~~y~V~~s~GHl~dL~~~~~~v~p~~~f~~~~~v~~~kk~~lk~Lk~l~k~ad~IIlAT 427 (1157)
++.|||||||+|||+|+++||++|+|+||+|||++|+.++.+|+++++|.+.|.+.+++++|++.|++++++|| |||||
T Consensus 5 mk~LvIaEkPs~Ak~Ia~~Lg~~y~Vt~s~GHl~~l~~~~~~~~~~~~f~p~~~~~~~~~~~~~~lk~l~k~ad-iiiAt 83 (633)
T 2gai_A 5 VKKYIVVESPAKAKTIKSILGNEYEVFASMGHIIDLPKSKFGVDLEKDFEPEFAVIKGKEKVVEKLKDLAKKGE-LLIAS 83 (633)
T ss_dssp --CEEEESCHHHHHHHHHHHGGGSEEEECCSCSEESCSSSCCEETTTTSEECCEECTTCHHHHHHHHHHHHHSC-EEECC
T ss_pred CcEEEEEeCHHHHHHHHHHhCCCCEEEecccccccCCccCCCCCcccCcCceEEECccHHHHHHHHHHHHhhCC-EEEcC
Confidence 36899999999999999999999999999999999999998899877798889888889999999999999999 99999
Q ss_pred CCCccccHHHHHHHHHHhhcccccCCccEEEEEEcccCHHHHHHHHHhcccccHhHHHHHHHHHHHhHhhhhhccHHHHh
Q 001106 428 DPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWR 507 (1157)
Q Consensus 428 DpDREGE~Ia~~Ile~l~~~~~~~~~k~vkRl~fsslT~~aI~~A~~nlr~~d~~L~~A~~AR~~lD~LiG~nlSR~lt~ 507 (1157)
|||||||+|||||+++++ ++++|+|+|||+||+++|++||+||+++|++|++||+||+++|||||||+||+||+
T Consensus 84 D~DREGE~I~~~i~~~~~------~~~~v~R~~fs~iT~~aI~~a~~~~~~~~~~l~~A~~aR~~~D~lvG~n~Sr~l~~ 157 (633)
T 2gai_A 84 DMDREGEAIAWHIARVTN------TLGRKNRIVFSEITPRVIREAVKNPREIDMKKVRAQLARRILDRIVGYSLSPVLWR 157 (633)
T ss_dssp CSSHHHHHHHHHHHHHHT------CTTSSCBCCCSSCCHHHHHHHHHSCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHcC------CCCCeEEEEEccCCHHHHHHHHhCCCCCcHHHHHHHHHhhHHHHHhhHHHCHHHHH
Confidence 999999999999999985 34799999999999999999999999999999999999999999999999999999
Q ss_pred hCCCccccCcchhHHHHHHHhHHHHHHhcCCcceEEEEEEEecCcCCCCCCceeeeeecccccccccccccCCHHHHHHH
Q 001106 508 KLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 587 (1157)
Q Consensus 508 k~~~~lS~GRVQTPtL~LVveRe~EI~~Fkp~~Yw~I~a~~~~~~~~~~~g~~f~a~l~~~~~~~~~~~~i~d~e~Ae~i 587 (1157)
++++.+|+||||||||+|||+||+||++|+|++||.|.+.+. + |.+.| .+++ .++.++++|+++
T Consensus 158 ~~~~~lS~GRVQtptL~lIv~Re~eI~~F~p~~y~~i~~~~~--------~--~~a~~-~~~~-----~~~~~~~~a~~~ 221 (633)
T 2gai_A 158 NFKSNLSAGRVQSATLKLVCDREREILRFVPKKYHRITVNFD--------G--LTAEI-DVKE-----KKFFDAETLKEI 221 (633)
T ss_dssp HHSCCCTTHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEET--------T--EEEEE-CCSS-----CCCCCHHHHHHH
T ss_pred hhhcccccCccchHHHHHHHHHHHHHHhCCCcceEEEEEEEe--------e--EEEEE-ecCC-----cccCCHHHHHHH
Confidence 998999999999999999999999999999999999999883 1 77777 3332 246699999999
Q ss_pred HHHHccCCeEEEEeeeeeeeecCCCCcchHHHHHHHHHHcCCCHHHHHHHHHHHhhcccCCCCCceEEEEEEccCCcCCC
Q 001106 588 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHIS 667 (1157)
Q Consensus 588 ~~~l~~~~~~V~~v~~k~~~~~PP~Pf~ts~LQ~~AskklG~Sa~~Tm~iAQ~LYE~~k~~~~~~~GlITYPRTDS~~Ls 667 (1157)
. .| ..++|.+|+.++++++||+||+|++||++||++|||||++||++||+|||+|+|+ +++.||||||||||++||
T Consensus 222 ~-~~--~~~~V~~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~tm~iaQ~LYE~~~~~-~~~~glITYpRTDs~~ls 297 (633)
T 2gai_A 222 Q-SI--DELVVEEKKVSVKKFAPPEPFKTSTLQQEAYSKLGFSVSKTMMIAQQLYEGVETK-DGHIAFITYMRTDSTRVS 297 (633)
T ss_dssp H-TC--CCEEEEEEEEEEEEECCCCCBCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCEECS-SSEECCBCCSCCSCCCCC
T ss_pred H-hC--CCeEEEEEEEEEEEecCCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHhhccccc-cCccceEEecCCCccccC
Confidence 9 77 6799999999999999999999999999999999999999999999999999997 568899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCccccccccccccCCCCCCCcccCChhhhhCCCCHHHHHHHHHHHHHHHHccCCC
Q 001106 668 DEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQP 747 (1157)
Q Consensus 668 ~~~~~~i~~~i~~~~g~~~~~~~~~r~~~~k~k~~q~AH~AI~PT~~~~~p~~l~~~Ls~dE~klY~LI~rRfLAs~~~~ 747 (1157)
+++...++.+|...||..|.+ ..++.|..+ ++.|+||||||||.....|+.+...|+++|++||+||||||||+||+|
T Consensus 298 ~~~~~~~~~~i~~~~g~~~~~-~~~r~~~~~-~~~~~aH~AI~PT~~~~~p~~~~~~L~~~e~klY~LI~rrflA~~~~~ 375 (633)
T 2gai_A 298 DYAKEEARNLITEVFGEEYVG-SKRERRKSN-AKIQDAHEAIRPTNVFMTPEEAGKYLNSDQKKLYELIWKRFLASQMKP 375 (633)
T ss_dssp HHHHHHHHHHHHHHTCGGGBC----------------CCCCBCBSCTTSCHHHHTTTSCHHHHHHHHHHHHHHHHHTBCC
T ss_pred HHHHHHHHHHHHHHhhhhhcc-cCCccccCC-CCcCCCCCCcccccccCChhhhhhcCCHHHHHHHHHHHHHHHHHhCch
Confidence 999999999998889887765 344544332 445789999999987556766655799999999999999999999999
Q ss_pred cEEEEEEEEEEecCccEEEEEEEEEEEEcCceecccccchhhhccccccchhhhhHHHhccCCCCCCeEEeeeEEeeecc
Q 001106 748 ATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 827 (1157)
Q Consensus 748 a~~e~t~v~i~~~~~~~~F~asg~~i~~~Gw~~vy~~~~~~~~~~~e~~e~~~~~~~~~LP~l~~Gd~v~~~~~~i~e~~ 827 (1157)
|+|++|+|++.+.++++.|+++|++++++||++||... ++ ..||.|++||.+.+.++.+.+++
T Consensus 376 a~~~~t~v~~~~~~~~~~F~a~g~~i~~~G~~~vy~~~----------~~-------~~LP~l~~G~~~~~~~~~~~~~~ 438 (633)
T 2gai_A 376 SQYEETRFVLRTKDGKYRFKGTVLKKIFDGYEKVWKTE----------RN-------TGEFPFEEGESVKPVVVKIEEQE 438 (633)
T ss_dssp EEEEEEEEEEECTTSSCEEEEEEEEEEECGGGGTSCCC----------CC-------BCCCCCCTTCEECCCEEEEEEEE
T ss_pred heEEEEEEEEEEeCCCcEEEEEEEEEecCCHHHhhccc----------cc-------ccCCCcCCCCEEEEeEEEEeeee
Confidence 99999999998822245899999999999999999320 00 35999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcCceeecccchhhhhhhhhcccccccChhhhHHHHHHh
Q 001106 828 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETEL 907 (1157)
Q Consensus 828 TkPP~ryTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~k~L~PT~lG~~vi~~L~~~f~~l~~p~~TA~~E~~L 907 (1157)
|+||+|||||+||++||+.|||||||||+||++|++|+||.++++.|+||++|+.|+++|+.+|+.|++|+|||.||+.|
T Consensus 439 T~PP~ryTEasLi~~Me~~GIGtpaT~A~iI~~L~~R~Yv~~~~k~l~pT~~G~~l~~~l~~~~~~l~~~~~Ta~~E~~L 518 (633)
T 2gai_A 439 TKPKPRYTEGSLVKEMERLGIGRPSTYASTIKLLLNRGYIKKIRGYLYPTIVGSVVMDYLEKKYSDVVSVSFTAEMEKDL 518 (633)
T ss_dssp CCCCCCCCHHHHHHHHHHHTCCCTTTHHHHHHHHHHTTSEEEETTEEEEBHHHHHHHHHHHHHSTTTTSHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHhhccCCCCcccHHHHHHHHhhcCcEEEcCCEEEEChhHHHHHHHHHHhhhhhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhcCccHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHhhhCCCccCCCCCCCCCCCCCCCceEEEEecccCceeEE
Q 001106 908 DNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFI 987 (1157)
Q Consensus 908 d~Ia~G~~~~~~~l~~F~~~f~~~v~~~~~~~i~~V~k~l~~~~g~~~~~~~~~~~g~CPkCGkg~lv~K~gr~G~~~F~ 987 (1157)
++|++|+.+|++||++|++.|...+..+............ ..-+.... ......|.||+||.+.++.+.+++|. .||
T Consensus 519 ~~I~~G~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~-c~cg~~~~-~k~g~~G~CP~Cg~g~l~~r~~k~G~-~f~ 595 (633)
T 2gai_A 519 DEVEQGKKTDKIVLREFYESFSSVFDRNDRIVVDFPTNQK-CSCGKEMR-LSFGKYGFYLKCECGKTRSVKNDEIA-VID 595 (633)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHTTCCTTCCCCCCEEEEEE-CTTSCEEE-EEEETTEEEEECSSSCCEECCTTSBC-EEE
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhcccch-hhcCceee-ecccccccCcccCCCcceeecccCCC-eEE
Confidence 9999999999999999999998776554221000000000 00000000 00012467999995578888777774 599
Q ss_pred ecCCCCCCcccccCCCCCCchhhhhhhccCCCCCcccCCCCCccceeeeccCCCc
Q 001106 988 GCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYG 1042 (1157)
Q Consensus 988 GCsnyP~Ck~t~~~~~~~~~~~e~~~~~~~~~~Pr~LG~cPkcGk~V~lK~GrfG 1042 (1157)
||++||+|+|+.+... .-..||+ |..++.+.+++|
T Consensus 596 gCs~yp~C~f~~~~~p-------------------~~~~Cp~-~~~l~~~~~~~g 630 (633)
T 2gai_A 596 DGKIFLGRKDSESGSP-------------------DGRSVEG-KGNLSEKRRKGK 630 (633)
T ss_dssp TTEEEC-------------------------------------------------
T ss_pred eCCCCcCCCCeecCCc-------------------cCCcCCC-CCeEEEEccCCC
Confidence 9999999999875421 1124888 888877777766
No 2
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=100.00 E-value=2.3e-133 Score=1212.10 Aligned_cols=547 Identities=39% Similarity=0.649 Sum_probs=488.2
Q ss_pred CCCeEEEEecchHHHHHHhhcCCCEEEEEeccccccccccC-----------------------------CCCCCCCCCc
Q 001106 347 SGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARS-----------------------------GSVRPDDDFS 397 (1157)
Q Consensus 347 ~~k~LiIaEkPskAk~Ia~~LG~~y~V~~s~GHl~dL~~~~-----------------------------~~v~p~~~f~ 397 (1157)
|++.|||||||+|||+|+++||.+|+|+||+|||++|+.+. .+++|+++|.
T Consensus 1 M~k~LiIaEkPs~Ak~Ia~~Lg~~~~Vt~~~GHl~~L~~~~~~~~~~~~~~~~~p~~y~~~~~~~~~~~~l~i~p~~~f~ 80 (592)
T 1mw9_X 1 MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPKKDERGALVNRMGVDPWHNWE 80 (592)
T ss_dssp -CCEEEEESCHHHHHHHHTTSCTTEEEEECCSCCEESCC-----------------------CHHHHHHHHTEETTTTTE
T ss_pred CCceEEEEECHHHHHHHHHHhCCCcEEEeeccccccCCcccccccccccccccchhhhchhhhcccchhcCCcCccccCc
Confidence 67899999999999999999999999999999999998753 3456766688
Q ss_pred ceEecccchHHHHHHHHHHhccCCeEEEccCCCccccHHHHHHHHHHhhcccccCCccEEEEEEcccCHHHHHHHHHhcc
Q 001106 398 MVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAR 477 (1157)
Q Consensus 398 ~~~~v~~~kk~~lk~Lk~l~k~ad~IIlATDpDREGE~Ia~~Ile~l~~~~~~~~~k~vkRl~fsslT~~aI~~A~~nlr 477 (1157)
+.|.+.+++++|++.|++++++||.||||||||||||+|||||+++|+. .+++|+|+|||+||+++|++||+|++
T Consensus 81 ~~~~~~~~k~~~~~~lk~l~k~ad~iiiAtD~DREGE~I~~~i~~~~~~-----~~~~v~R~~fs~iT~~aI~~A~~~~~ 155 (592)
T 1mw9_X 81 AHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVIGG-----DDARYSRVVFNEITKNAIRQAFNKPG 155 (592)
T ss_dssp ECCEECTTCHHHHHHHHHHHHTCSEEEECCCSSHHHHHHHHHHHHHHCS-----CGGGEEECCCSSCSHHHHHHHHHSCB
T ss_pred eeEEEcccHHHHHHHHHHHHhcCCeEEEcCCCCccccHHHHHHHHHhCC-----CCCCeEEEEEccCCHHHHHHHHhCCc
Confidence 8888888899999999999999999999999999999999999999853 23589999999999999999999999
Q ss_pred cccHhHHHHHHHHHHHhHhhhhhccHHHHhhCCCccccCcchhHHHHHHHhHHHHHHhcCCcceEEEEEEEecCcCCCCC
Q 001106 478 EIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLD 557 (1157)
Q Consensus 478 ~~d~~L~~A~~AR~~lD~LiG~nlSR~lt~k~~~~lS~GRVQTPtL~LVveRe~EI~~Fkp~~Yw~I~a~~~~~~~~~~~ 557 (1157)
++|++|++||+||+++|||||||+||+||+++++.+|+||||||||+|||+||+||++|+|++||.|.+.+... .
T Consensus 156 ~~~~~l~~A~~aR~~~D~lvG~n~Sr~l~~~~~~~lS~GRVQtptL~lIv~Re~eI~~F~p~~y~~i~~~~~~~-----~ 230 (592)
T 1mw9_X 156 ELNIDRVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTP-----S 230 (592)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCCCTTHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECT-----T
T ss_pred cccHHHHHHHHHHHHHHHHhhHhhhHHHHhhhccccccCccchhHHHHHHHHHHHHHhCCCcceEEEEEEEecC-----C
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999532 2
Q ss_pred CceeeeeecccccccccccccCCHHHHHHHHHHHccCCeEEEEeeeeeeeecCCCCcchHHHHHHHHHHcCCCHHHHHHH
Q 001106 558 TFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKL 637 (1157)
Q Consensus 558 g~~f~a~l~~~~~~~~~~~~i~d~e~Ae~i~~~l~~~~~~V~~v~~k~~~~~PP~Pf~ts~LQ~~AskklG~Sa~~Tm~i 637 (1157)
+..|.+.|....++ .+++.++++|+.+.+.|++..++|.+|+.+++++.||+||+|++||++||++|||||++||++
T Consensus 231 ~~~~~~~~~~~~~~---~~~~~~~~~a~~~~~~l~~~~~~V~~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~tm~i 307 (592)
T 1mw9_X 231 GEALALQVTHQNDK---PFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMM 307 (592)
T ss_dssp CCEEEEEEEEETTE---ECCCCSHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCBCHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CcEEEEEEEecCCc---ccccCCHHHHHHHHHHhcCCCeEEEEEEEEEEeccCCCCccHHHHHHHHHHhhCCCHHHHHHH
Confidence 34677777543322 356789999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCceEEEEEEccCCcCCCHHHHHHHHHHHHHHhCCCCCCCCCCCccccccccccccCCCCCCCcccCC
Q 001106 638 AQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRL 717 (1157)
Q Consensus 638 AQ~LYE~~k~~~~~~~GlITYPRTDS~~Ls~~~~~~i~~~i~~~~g~~~~~~~~~r~~~~k~k~~q~AH~AI~PT~~~~~ 717 (1157)
||+|||+ ||||||||||++||+++++.++.+|...||..|.+ ..++.+..+ +++|+||||||||.....
T Consensus 308 AQ~LYE~---------glITYpRTDs~~ls~~~~~~~~~~i~~~~g~~~~~-~~~~~~~~~-~~~~~aH~AI~PT~~~~~ 376 (592)
T 1mw9_X 308 AQRLYEA---------GYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLP-ESPNQYASK-ENSQEAREAIRPSDVNVM 376 (592)
T ss_dssp HHHHHHT---------TSBCCSCCCCCCCCHHHHHHHHHHHHHHTCGGGSC-SSCCCCC---------CCCBCBSCTTCC
T ss_pred HHHHHhC---------CeeeccCCCCCccCHHHHHHHHHHHHHhhhhhhcc-cCCccccCC-CCCCCCCCCEecccCccC
Confidence 9999996 89999999999999999999999999889887775 345555433 346789999999986545
Q ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHccCCCcEEEEEEEEEEecCccEEEEEEEEEEEEcCceecccccchhhhccccccc
Q 001106 718 PAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEE 797 (1157)
Q Consensus 718 p~~l~~~Ls~dE~klY~LI~rRfLAs~~~~a~~e~t~v~i~~~~~~~~F~asg~~i~~~Gw~~vy~~~~~~~~~~~e~~e 797 (1157)
|..+ ..|+++|++||+|||||||||||+||+|++|+|++.+++ +.|+++|++++++||++||..... +++
T Consensus 377 ~~~l-~~Ls~~e~klY~LI~rrflA~~~~~a~~~~t~v~~~~~~--~~F~a~g~~i~~~Gw~~vy~~~~~------~~~- 446 (592)
T 1mw9_X 377 AESL-KDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGD--FRLKARGRILRFDGWTKVMPALRK------GDE- 446 (592)
T ss_dssp GGGC-SSCCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEETT--EEEEEEEEEEEECGGGGGSCCC----------C-
T ss_pred ccch-hhCCHHHHHHHHHHHHHHHHHhCchhEEEEEEEEEEECC--EEEEEEEEEEeeCChHHhcCcccc------ccc-
Confidence 6555 469999999999999999999999999999999998864 589999999999999999964311 001
Q ss_pred hhhhhHHHhccCCCCCCeEEeeeEEeeecccCCCCCCCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcCceeecc
Q 001106 798 NDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPE 877 (1157)
Q Consensus 798 ~~~~~~~~~LP~l~~Gd~v~~~~~~i~e~~TkPP~ryTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~k~L~PT 877 (1157)
...||.|++||.+.+.++.+.+++|+||+|||||+||++||+.|||||||||+||++|++||||.++++.|+||
T Consensus 447 ------~~~LP~l~~G~~~~~~~~~~~~~~T~PP~ryTEasLi~~Me~~GIGtpATrA~iI~~L~~R~Yv~~~~k~l~pT 520 (592)
T 1mw9_X 447 ------DRILPAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAE 520 (592)
T ss_dssp ------CCCCCCCCTTCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHTTCCCTTTHHHHHHHHHHTTSEEEETTEEEEC
T ss_pred ------cccccccCCCCEeEeeEeEEeeeeccCCCCCCHHHHHHHHHhcCCCchhhHHHHHHHHHhcCceeecCCEeeec
Confidence 14599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhcccccccChhhhHHHHHHhhhHhhcCccHHHHHHHHHHHhhhhhh
Q 001106 878 FRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCT 933 (1157)
Q Consensus 878 ~lG~~vi~~L~~~f~~l~~p~~TA~~E~~Ld~Ia~G~~~~~~~l~~F~~~f~~~v~ 933 (1157)
++|+.|+++|..+|+.|++|+|||.||..|++|++|+.+|++||++|+..|...+.
T Consensus 521 ~~G~~l~~~L~~~~~~l~~~~~Ta~~E~~L~~I~~G~~~~~~~l~~~~~~~~~~~~ 576 (592)
T 1mw9_X 521 KMGEIVTDRLEENFRELMNYDFTAQMENNLDQVANHEAEWKAVLDHFFSDFTQQLD 576 (592)
T ss_dssp HHHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876543
No 3
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=100.00 E-value=5e-130 Score=1192.11 Aligned_cols=574 Identities=22% Similarity=0.291 Sum_probs=475.5
Q ss_pred CeEEEEecchHHHHHHhhc-------------CCCEEEEEeccccccccccC------CCCCCCCCC-----cceEeccc
Q 001106 349 KSVVVVESVTKAKVIQGYL-------------GDMYEVLPSYGHVRDLAARS------GSVRPDDDF-----SMVWEVPS 404 (1157)
Q Consensus 349 k~LiIaEkPskAk~Ia~~L-------------G~~y~V~~s~GHl~dL~~~~------~~v~p~~~f-----~~~~~v~~ 404 (1157)
|.|||||||++||+|+++| |++|+|+||+|||++|+.|+ ..|+.+ ++ .+.|.+.+
T Consensus 1 M~LiIaEKPs~Ak~Ia~~L~g~~~r~~gy~e~g~~~~Vt~~~GHl~~L~~p~~y~~~~k~W~~~-~lpi~p~~~~~~v~~ 79 (659)
T 1i7d_A 1 MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYARWNLA-DLPIVPEKWQLQPRP 79 (659)
T ss_dssp CEEEEESSHHHHHHHHTTSCSCCEEETTEEEETTTEEEEECSSCSEEECCHHHHCGGGGSCCST-TCSCCCSSCCEEECG
T ss_pred CEEEEEECHHHHHHHHHHhcCCcccCCCcEeeCCCEEEEeccchhhcCCCccccchhccccccC-Ccccccccceeeecc
Confidence 5799999999999999999 88899999999999998753 233321 11 12466777
Q ss_pred chHHHHHHHHHHhccCCeEEEccCCCccccHHHHHHHHHHhhcccccCCccEEEEEEcccCHHHHHHHHHhccccc--Hh
Q 001106 405 AAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREID--AN 482 (1157)
Q Consensus 405 ~kk~~lk~Lk~l~k~ad~IIlATDpDREGE~Ia~~Ile~l~~~~~~~~~k~vkRl~fsslT~~aI~~A~~nlr~~d--~~ 482 (1157)
++++|++.|++|+++||.||||||||||||+|||||+++++.. .+.+++|+|+|||+||+++|++||+||++++ ++
T Consensus 80 ~~~~~~~~lk~l~k~ad~iiiAtD~DREGE~I~~~i~~~~~~~--~~~~~~v~R~~fs~iT~~aI~~A~~nlr~~~~~~~ 157 (659)
T 1i7d_A 80 SVTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQLA--PEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVP 157 (659)
T ss_dssp GGHHHHHHHHHHHHHCSEEEEECCSSHHHHHHHHHHHHHTTCC--HHHHHTCEECCCSCCSHHHHHHHHTTCEEGGGGHH
T ss_pred cHHHHHHHHHHHHhcCCeEEEcCCCCCCCCHHHHHHHHHhCcc--ccCCCceEEEEEccCCHHHHHHHHhCCCCcchhhh
Confidence 8999999999999999999999999999999999999998531 0114799999999999999999999999987 89
Q ss_pred HHHHHHHHHHHhHhhhhhccHHHHh-----hCCCccccCcchhHHHHHHHhHHHHHHhcCCcceEEEEEEE-ecCcCCCC
Q 001106 483 LVQAYLARRALDYLIGFNISPLLWR-----KLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVL-DKKESHSL 556 (1157)
Q Consensus 483 L~~A~~AR~~lD~LiG~nlSR~lt~-----k~~~~lS~GRVQTPtL~LVveRe~EI~~Fkp~~Yw~I~a~~-~~~~~~~~ 556 (1157)
|++||+||+++|||||||+||+||. ++++++|+||||||||+|||+||+||++|+|++||.|.+.+ ..
T Consensus 158 l~~A~~aR~~~D~lvG~n~Sr~lt~~~r~~~~~~~lS~GRVQTPtL~lIv~Re~eI~~F~p~~yw~i~~~~~~~------ 231 (659)
T 1i7d_A 158 LCVSALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTP------ 231 (659)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCCCCCTTHHHHHHHHHHHHHHHHTCCCCEEEEEEEEEECT------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCceecCccccchHHHHHHHHHHHHhCCCcceEEEEEEEecC------
Confidence 9999999999999999999999987 34568999999999999999999999999999999999998 42
Q ss_pred CCceeeeeeccccccc---ccccccCCHHHHHHHHHHHccCCeEEEEeeeeeeeecCCCCcchHHHHHHHHHHcCCCHHH
Q 001106 557 DTFSFPAHLTHFQSKR---LNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATY 633 (1157)
Q Consensus 557 ~g~~f~a~l~~~~~~~---~~~~~i~d~e~Ae~i~~~l~~~~~~V~~v~~k~~~~~PP~Pf~ts~LQ~~AskklG~Sa~~ 633 (1157)
.+..|.++|...++.+ .++.++.|+++|+++.+.|.+..++|.+|+.++++++||+||+|++||++||++|||||++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~a~~~~~~~~~~~~~V~~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~ 311 (659)
T 1i7d_A 232 ADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQN 311 (659)
T ss_dssp TCCEEEEEECCCGGGTTTBCTTCCBCCHHHHHHHHHHHSSCEEECCEEEEEEEEECCCCSBCHHHHHHHHHHHHCCCHHH
T ss_pred CCcEEEEEEEeccccccccccccccCCHHHHHHHHHHhccCCeEEEEEEeEEEEecCCCCccHHHHHHHHHHhcCCCHHH
Confidence 1346888886543321 1235789999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCCceEEEEEEccCCcCCCHHHHHHHHHHHHHHh--CCCCCCC------CCCCcccccccccccc
Q 001106 634 TMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERY--GSHHAPE------EGPRKYFKKVKNAQEA 705 (1157)
Q Consensus 634 Tm~iAQ~LYE~~k~~~~~~~GlITYPRTDS~~Ls~~~~~~i~~~i~~~~--g~~~~~~------~~~r~~~~k~k~~q~A 705 (1157)
||++||+|||+ .||||||||||++||++++++++.+|...+ +..+... ..++.+. . ..++|
T Consensus 312 Tm~iAQ~LYE~--------~glITYpRTDS~~ls~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~-~--~kv~a 380 (659)
T 1i7d_A 312 VLDICQKLYET--------HKLITFPRSDCRYLPEEHFAGRHAVMNAISVHAPDLLPQPVVDPDIRNRCWD-D--KKVDA 380 (659)
T ss_dssp HHHHHHHHHHT--------SCCBSCSSCCCCCBCGGGGGGHHHHHHHHHHHSTTTCCCTTCCTTCCCTTBC-G--GGCCS
T ss_pred HHHHHHHHHHh--------CCeEeccCCCCcccCHHHHHHHHHHHHHHhccchhhhhhhhccccccccccC-C--CccCC
Confidence 99999999994 289999999999999999999999887643 3333221 1223222 2 12589
Q ss_pred CCCCCCCcccCChhhhhCCCCHHHHHHHHHHHHHHHHccCCCcEEEEEEEEEEecCccEEEEEEEEEEEEcCceeccccc
Q 001106 706 HEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDV 785 (1157)
Q Consensus 706 H~AI~PT~~~~~p~~l~~~Ls~dE~klY~LI~rRfLAs~~~~a~~e~t~v~i~~~~~~~~F~asg~~i~~~Gw~~vy~~~ 785 (1157)
|||||||.... + + . |+++|++||+||||||||+||+||+|++|+|.+.+++ +.|+++|++++++||++||+..
T Consensus 381 H~AI~PT~~~~-~--~-~-Ls~de~klY~LI~rRflA~~~~~a~~~~t~v~~~~~~--~~F~a~G~~i~~~Gw~~vy~~~ 453 (659)
T 1i7d_A 381 HHAIIPTARSS-A--I-N-LTENEAKVYNLIARQYLMQFCPDAVFRKCVIELDIAK--GKFVAKARFLAEAGWRTLLGSK 453 (659)
T ss_dssp SCCBCBCSCCS-C--C-C-CCHHHHHHHHHHHHHHHHTTSCCEEEEEEEEEECSTT--CCEEECEEEEEECGGGGGSCTT
T ss_pred CCCcCCcCCCC-c--c-C-CCHHHHHHHHHHHHHHHHHhCchheEEEEEEEEEECC--EEEEEEEEEEecCChhheeccc
Confidence 99999998532 1 2 3 9999999999999999999999999999999998864 4799999999999999999653
Q ss_pred chhhhccccccchhhhhHHHhccCCCCCCeEEeeeEEeeecccCCCCCCCHHHHHHHHHh-----------------cCC
Q 001106 786 DAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEE-----------------LGI 848 (1157)
Q Consensus 786 ~~~~~~~~e~~e~~~~~~~~~LP~l~~Gd~v~~~~~~i~e~~TkPP~ryTEasLI~~MEk-----------------~GI 848 (1157)
+. +++++ ...||.|++||.+.+.++.+.+++|+||+|||||+||++||+ .||
T Consensus 454 ~~-----~~~~~------~~~LP~l~~Ge~~~~~~~~~~e~~T~PP~ryTEasLi~~Me~~~k~v~d~e~~~~lk~~~GI 522 (659)
T 1i7d_A 454 ER-----DEEND------GTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGL 522 (659)
T ss_dssp GG-----GTTCE------ECCCCCCCTTCEEEEEEEEEEEEECCCCCCEEHHHHHHHHHTGGGGCCCHHHHHHHHHTTSS
T ss_pred cc-----ccccc------cccCCccCCCCEEEEeEeEEeeeecCCCCCCCHHHHHHHHHHhccccCCHHHHHHHhhccCC
Confidence 11 00000 145999999999999999999999999999999999999994 599
Q ss_pred CCCCchHHHHHhccccceEEEcCceeecccchhhhhhhhhcccccccChhhhHHHHHHhhhHhhcCccHHHHHHHHHHHh
Q 001106 849 GRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRF 928 (1157)
Q Consensus 849 GTpATrA~IIe~L~~R~YV~~k~k~L~PT~lG~~vi~~L~~~f~~l~~p~~TA~~E~~Ld~Ia~G~~~~~~~l~~F~~~f 928 (1157)
|||||||+||++|++|+||+++++.|+||++|+.|+++|+. .|++|+|||.||+.|++|++|+.+|++||++|++.+
T Consensus 523 GtpATrA~iIe~L~~R~Yv~~~~k~l~pT~~G~~l~~~l~~---~l~~p~~Ta~~E~~L~~I~~G~~~~~~~l~~~~~~~ 599 (659)
T 1i7d_A 523 GTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHSLPE---MATRPDMTAHWESVLTQISEKQCRYQDFMQPLVGTL 599 (659)
T ss_dssp SCTTTHHHHHHHHHHTTSEEESSSEEEECHHHHHHHHHSCH---HHHSTHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHhCCcEeecCCEEeECHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999986 389999999999999999999999999999999988
Q ss_pred hhhhhhccchhHHHHHHHHHhhhCCCccCCCCCCCCCCCCCCCceEEEEecccC
Q 001106 929 SSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFG 982 (1157)
Q Consensus 929 ~~~v~~~~~~~i~~V~k~l~~~~g~~~~~~~~~~~g~CPkCGkg~lv~K~gr~G 982 (1157)
...+..+.. ..+. ....+.||+||+ .|+.+.+.+|
T Consensus 600 ~~~v~~~~~-----------~~~~-------~~~~~~CP~Cg~-~l~~~~~~~g 634 (659)
T 1i7d_A 600 YQLIDQAKR-----------TPVR-------QFRGIVAPGSGG-SADKKKAAPR 634 (659)
T ss_dssp HHHHHHHHT-----------SCSG-------GGTTCCCC---------------
T ss_pred HHHHHHHHh-----------cccc-------cccCCCCCCCCC-eeEEecCcCC
Confidence 765433210 0010 123578999997 4555544444
No 4
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1e-114 Score=1116.02 Aligned_cols=507 Identities=27% Similarity=0.384 Sum_probs=444.5
Q ss_pred CCCCCeEEEEecchHHHHHHhhcCCC----------E---------EEEEeccccccccccCC--CCCCCC-CCcceEec
Q 001106 345 PPSGKSVVVVESVTKAKVIQGYLGDM----------Y---------EVLPSYGHVRDLAARSG--SVRPDD-DFSMVWEV 402 (1157)
Q Consensus 345 ~~~~k~LiIaEkPskAk~Ia~~LG~~----------y---------~V~~s~GHl~dL~~~~~--~v~p~~-~f~~~~~v 402 (1157)
..|++.|||||||+|||+|+++||.. | +|+|++|||++|+.+++ +|+.++ +|.|.|..
T Consensus 538 ~~m~~~LvIaEkPs~Ak~ia~~Lg~~~~~~~~~~~~ye~~~~~~~~~v~~~~GHl~~l~~~~~~~~~~~~~~~~~p~y~~ 617 (1104)
T 4ddu_A 538 DTSRSLLIIVESPTKAETLSRFLGRASSRKERNIIVHEAVTGEGVILFTATRGHVYDLVTKGGIHGVEEENGKFVPVYNS 617 (1104)
T ss_dssp CCCBCEEEEESCHHHHHHHHHHHTCCEEEEETTEEEEEEEETTEEEEEEECCSCCEEECSSSTBTTBEEETTEEECEEEE
T ss_pred HhcCCeEEEEECHHHHHHHHHHhCCCccccCCCceeEEEecCCceEEEEEeccccccCCCccccCccccccCCcCccccc
Confidence 46889999999999999999999876 3 79999999999998753 343333 45555431
Q ss_pred c-------------------------cchHHHHHHHHHHhccCCeEEEccCCCccccHHHHHHHHHHhhcccccCCccEE
Q 001106 403 P-------------------------SAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVA 457 (1157)
Q Consensus 403 ~-------------------------~~kk~~lk~Lk~l~k~ad~IIlATDpDREGE~Ia~~Ile~l~~~~~~~~~k~vk 457 (1157)
. ++++++++.|++++++||.||||||||||||+|||||+++++. ++++|+
T Consensus 618 ~~~~~~~~~~f~~~~~~~p~~~~~~~~~~~~~~~~lk~~~~~~d~i~~atD~DrEGE~I~~~i~~~~~~-----~~~~~~ 692 (1104)
T 4ddu_A 618 LKRCRDCGYQFTEDRDECPVCSSKNIDDKTETLRALREISLEADEILVATDPDVEGEKISWDVTQYLLP-----STRSLR 692 (1104)
T ss_dssp CEEETTTCCEECSCCSSCTTTCCSCEEEHHHHHHHHHHHTTTCSEEEECCCSSHHHHHHHHHHHHHHTT-----TCSCEE
T ss_pred cccccchhhhhccccccccccccccCccHHHHHHHHHHHHhcCCEEEECcCCchhHHHHHHHHHHHhcc-----cCCCeE
Confidence 1 2688999999999999999999999999999999999999853 457899
Q ss_pred EEEEcccCHHHHHHHHHhcccccHhHHHHHHHHHHHhHhhhhhccHHHHhhCC-CccccCcchhHHHHHHHhHHHHHHhc
Q 001106 458 RVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLP-GCQSAGRVQSAALSLICDREMEIDEF 536 (1157)
Q Consensus 458 Rl~fsslT~~aI~~A~~nlr~~d~~L~~A~~AR~~lD~LiG~nlSR~lt~k~~-~~lS~GRVQTPtL~LVveRe~EI~~F 536 (1157)
|+|||+||+++|++||+||+++|++|++||+||+++|||||||+||+||++++ +.+|+||||||||+|||+||+||+
T Consensus 693 R~~f~~it~~aI~~a~~~~~~~~~~l~~a~~aR~~~D~lvG~~~sr~l~~~~~~~~lS~GRVQtptL~liv~Re~ei~-- 770 (1104)
T 4ddu_A 693 RIEMHEITRYGFKKARESVRFVDFNLVKAQIVRRVQDRWIGFELSGKLQKRFGRSNLSAGRVQSTVLGWIVEREEEYK-- 770 (1104)
T ss_dssp ECCCSSSSHHHHHHHHHTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCCHHHHHHHHHHHHHHHTTT--
T ss_pred EEEEccCCHHHHHHHHhCCCcCchhHHHHHHHHHHHHHHHHHHHhHHHHHhhCCcccccCccccHHHHHHHHHHHHHh--
Confidence 99999999999999999999999999999999999999999999999999986 479999999999999999999999
Q ss_pred CCcceEEEEEEEecCcCCCCCCceeeeeecccccccccccccCCHHHHHHHHHHHccCCeEEEEeeeeeeeecCCCCcch
Q 001106 537 KPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYIT 616 (1157)
Q Consensus 537 kp~~Yw~I~a~~~~~~~~~~~g~~f~a~l~~~~~~~~~~~~i~d~e~Ae~i~~~l~~~~~~V~~v~~k~~~~~PP~Pf~t 616 (1157)
+|++||.|.. .. .+..|...|. . + +..++|.+|+.++++++||+||+|
T Consensus 771 ~~~~~~~i~~--~~------~~~~~~~~~~-----~-------~------------~~~~~V~~v~~k~~~~~pp~pf~t 818 (1104)
T 4ddu_A 771 KSEKDFTLLV--LE------NGVNLEVEGK-----I-------A------------DDVVTVVELQEAEEEKNPLPPYTT 818 (1104)
T ss_dssp TCCCCEEEEE--ET------TSCEEEEESC-----C-------C------------CCEEEEEEEEEEEEEECCCCCBCH
T ss_pred ccCcEEEEEE--ec------CcEEEEeecc-----c-------c------------CCcEEEEEEEeeeEEecCCCCCCH
Confidence 6789999832 11 2334433221 0 0 357899999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhcccCCCCCceEEEEEEccCCcCCCHHHHHHHHHHHHHHhCCCCCCCCCCCccc
Q 001106 617 STLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYF 696 (1157)
Q Consensus 617 s~LQ~~AskklG~Sa~~Tm~iAQ~LYE~~k~~~~~~~GlITYPRTDS~~Ls~~~~~~i~~~i~~~~g~~~~~~~~~r~~~ 696 (1157)
++||++||++|||||++||++||+|||+ ||||||||||++||+++++.++++|...+|..|.. +|.|
T Consensus 819 ~~Lq~~a~~~~g~s~~~tm~iaQ~LYe~---------g~iTYpRTds~~l~~~~~~~~~~~i~~~~~~~~~~---~r~~- 885 (1104)
T 4ddu_A 819 SSALSEISQKLRLGVQEVMDILQDLFEK---------GFITYHRTDSTRISLEGQNVARTYLRKIGKEDIFM---GRSW- 885 (1104)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHT---------TSBSCSCCSCCCCCHHHHHHHHHHHHHHSCGGGBC---CCCC-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC---------CceeecCCCccccCHHHHHHHHHHHHHhhCccccC---CCCC-
Confidence 9999999999999999999999999995 89999999999999999999999999888876643 4443
Q ss_pred cccccccccCCCCCCCcccCChhhhh--------CCCCHHHHHHHHHHHHHHHHccCCCcEEEEEEEEEEecCccEEEEE
Q 001106 697 KKVKNAQEAHEAIRPTDIRRLPAMLS--------GLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRS 768 (1157)
Q Consensus 697 ~k~k~~q~AH~AI~PT~~~~~p~~l~--------~~Ls~dE~klY~LI~rRfLAs~~~~a~~e~t~v~i~~~~~~~~F~a 768 (1157)
++++||||||||... .|+.+. ..|+++|++||+||||||||+||+||+|++|+|++.++++ .|++
T Consensus 886 ----~~~~aH~aI~Pt~~~-~~~~~~~~~~~~~~~~l~~~e~~lY~lI~~rfla~~~~~a~~~~t~v~~~~~~~--~f~~ 958 (1104)
T 4ddu_A 886 ----STEGAHEAIRPVKPI-DARELEEMIEEGLIADLTKKHLRVYELIFNRFLASQSAAVKVKKQIVTVDVDGK--RMGI 958 (1104)
T ss_dssp ----CSSCSSCCBCBSSSC-CHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHHHHHHBCCEEEEEEEEEEESSSC--EEEE
T ss_pred ----CCCCCCcCcCCCccC-ChHhhhhhhcccccccCCHHHHHHHHHHHHHHHHHhCCceeEEEEEEEEEECCE--EEEE
Confidence 357999999999863 343321 2599999999999999999999999999999999988654 7999
Q ss_pred EEE-EEEEcCceecccccchhhhccccccchhhhhHHHhccCCCCCCeEEeeeEEeeecccCCCCCCCHHHHHHHHHhcC
Q 001106 769 SCS-RVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELG 847 (1157)
Q Consensus 769 sg~-~i~~~Gw~~vy~~~~~~~~~~~e~~e~~~~~~~~~LP~l~~Gd~v~~~~~~i~e~~TkPP~ryTEasLI~~MEk~G 847 (1157)
+|+ +++++||++||+. ..||.+++| .+.+.++. .++|+||+|||||+||++||+.|
T Consensus 959 ~g~~~i~~~G~~~v~~~--------------------~~lp~l~~g-~~~~~~~~--~~~~~~p~~~tea~Li~~me~~G 1015 (1104)
T 4ddu_A 959 EQIVEILRDGWNLFVPL--------------------TVSPRFEHR-TYKIKEKK--FYKKHTVPLFTQASIVEEMKKRG 1015 (1104)
T ss_dssp EEEEEEEECSGGGTSCC--------------------CCCCCCCSS-EEEEEEEE--EECCCSSCCBCHHHHHHHHHHHT
T ss_pred EEEEEEEECCHHHhccc--------------------ccCCCCCCC-ceEEEEee--eeecCCCCCCCHHHHHHHHHhcC
Confidence 996 7899999999952 249999999 67765554 47889999999999999999999
Q ss_pred CCCCCchHHHHHhccccceEEEcC-ceeecccchhhhhhhhhcccccccChhhhHHHHHHhhhHhhcCccHHHHHHHHHH
Q 001106 848 IGRPSTYASTLKVLQDRNYVTVKS-RILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWS 926 (1157)
Q Consensus 848 IGTpATrA~IIe~L~~R~YV~~k~-k~L~PT~lG~~vi~~L~~~f~~l~~p~~TA~~E~~Ld~Ia~G~~~~~~~l~~F~~ 926 (1157)
||||||||+||++|++|+||.+++ +.|+||++|+.|+++|.++|+.|++|+|||.||++||+|++|+.+|++||++|++
T Consensus 1016 IGtpaT~a~iI~~l~~r~Yv~~~~~~~l~pT~~G~~l~~~l~~~~~~l~~~~~Ta~~E~~l~~I~~G~~~~~~~l~~~~~ 1095 (1104)
T 4ddu_A 1016 IGRPSTYAKIVEVLFRRGYVYEDKYKRVRPTRFGVMVYSYLKERYEKYVTEETTRRLEEIMDKVERGEEDYQATLRLLYE 1095 (1104)
T ss_dssp CSCTTTHHHHHHHHHHTTSEEECTTCCEEECHHHHHHHHHHHHHCGGGTCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHhCCeEEEcCCCeEeEchHHHHHHHHHHHhchhhcCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999999999999999999988 8999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhh
Q 001106 927 RFSSYCT 933 (1157)
Q Consensus 927 ~f~~~v~ 933 (1157)
.|...++
T Consensus 1096 ~~~~~i~ 1102 (1104)
T 4ddu_A 1096 EIKSLME 1102 (1104)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 8876543
No 5
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.2e-110 Score=1072.94 Aligned_cols=491 Identities=31% Similarity=0.443 Sum_probs=426.3
Q ss_pred CCCCCeEEEEecchHHHHHHhhcCCC-------------------EEEEEeccccccccccCC--CCCCCCCCcceEe--
Q 001106 345 PPSGKSVVVVESVTKAKVIQGYLGDM-------------------YEVLPSYGHVRDLAARSG--SVRPDDDFSMVWE-- 401 (1157)
Q Consensus 345 ~~~~k~LiIaEkPskAk~Ia~~LG~~-------------------y~V~~s~GHl~dL~~~~~--~v~p~~~f~~~~~-- 401 (1157)
..|++.|||||||++||+|+++||.. |+|+||+|||++|+.|+. +++.+++|.|.|.
T Consensus 502 ~~m~~~LiIaEkPs~ak~ia~~Lg~~~~~~~~~~~~ye~~~~~~~~~vt~~~GHl~~l~~~~~~~~~~~~~~~~P~~~~~ 581 (1054)
T 1gku_B 502 DLIKPALFIVESPTKARQISRFFGKPSVKVLDGAVVYEIPMQKYVLMVTASIGHVVDLITNRGFHGVLVNGRFVPVYASI 581 (1054)
T ss_dssp CCCEEEEEEESCHHHHHHHHGGGEECEEEEETTEEEEEEECSSEEEEEEECCSCSEEECSSSSTTSSCCSSSCCCEEEEC
T ss_pred hccCCEEEEEECHHHHHHHHHHhCCCcccCCCCceeEEeecCCceEEEEEeccccccCCCchhhcCcccccCcCCccccc
Confidence 34678999999999999999999763 389999999999998752 3333445666432
Q ss_pred -----------------------cccchHHHHHHHHHHhccCCeEEEccCCCccccHHHHHHHHHHhhcccccCCccEEE
Q 001106 402 -----------------------VPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVAR 458 (1157)
Q Consensus 402 -----------------------v~~~kk~~lk~Lk~l~k~ad~IIlATDpDREGE~Ia~~Ile~l~~~~~~~~~k~vkR 458 (1157)
+.++++++++.|++++++||.||||||||||||+|||||+++++ ++++|+|
T Consensus 582 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~l~~~~d~ii~atD~DrEGE~I~~~i~~~~~------~~~~~~R 655 (1054)
T 1gku_B 582 KRCRDCGYQFTEDRESCPKCGSENVDNSRSRIEALRKLAHDAEFVIVGTDPDTEGEKIAWDLKNLLS------GCGAVKR 655 (1054)
T ss_dssp C------------------------CCHHHHHHHHHHHHHHHSEEEECCCSSHHHHHHHHHHHHHHT------TSSEEEE
T ss_pred ccccchhhhcccccccccccccccCccHHHHHHHHHHHHhcCCEEEECCCCChhhhHHHHHHHHHhC------CCCCeEE
Confidence 12267899999999999999999999999999999999999983 4569999
Q ss_pred EEEcccCHHHHHHHHHhcccccHhHHHHHHHHHHHhHhhhhhccHHHHhhCC-CccccCcchhHHHHHHHhHHHHHHhcC
Q 001106 459 VVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLP-GCQSAGRVQSAALSLICDREMEIDEFK 537 (1157)
Q Consensus 459 l~fsslT~~aI~~A~~nlr~~d~~L~~A~~AR~~lD~LiG~nlSR~lt~k~~-~~lS~GRVQTPtL~LVveRe~EI~~Fk 537 (1157)
+|||+||+++|++||+||+++|++|++||+||+++|||||||+||+||++++ +.+|+||||||||+|||+||+|| +
T Consensus 656 ~~~~~it~~aI~~a~~~~~~~~~~l~~a~~aR~~~D~lvG~~~sr~l~~~~~~~~lS~GRVQtptL~~iv~Re~ei---~ 732 (1054)
T 1gku_B 656 AEFHEVTRRAILEALESLRDVDENLVKAQVVRRIEDRWIGFVLSQKLWERFNNRNLSAGRAQTLVLGWIIDRFQES---R 732 (1054)
T ss_dssp CCCSBCSHHHHHHHHTSCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCTTHHHHHHHHHHHHTGG---G
T ss_pred EEEccCCHHHHHHHHhCCCCCcHhHHHHHHhHHHHHHHHHHHhCHHHHHhccCceeeeccccchHHHHHHHHHHhh---C
Confidence 9999999999999999999999999999999999999999999999999876 58999999999999999999999 6
Q ss_pred CcceEEEEEEEecCcCCCCCCceeeeeecccccccccccccCCHHHHHHHHHHHccCCeEEEEeeeeeeeecCCCCcchH
Q 001106 538 PQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITS 617 (1157)
Q Consensus 538 p~~Yw~I~a~~~~~~~~~~~g~~f~a~l~~~~~~~~~~~~i~d~e~Ae~i~~~l~~~~~~V~~v~~k~~~~~PP~Pf~ts 617 (1157)
|++||.+. . |..|...+ ++ + . + .++|.+|+.++++++||+||+|+
T Consensus 733 ~~~~~~~~----~-------~~~~~~~~-----~~---------~---~----~---~~~V~~v~~k~~~~~pp~pf~~~ 777 (1054)
T 1gku_B 733 ERRKIAIV----R-------DFDLVLEH-----DE---------E---E----F---DLTIKLVEEREELRTPLPPYTTE 777 (1054)
T ss_dssp SEEEEEEE----T-------TTTEEESC-----CC---------S---E----E---EEEEEEEEEEEEEECCCCCBCHH
T ss_pred CcCcEEEE----C-------CEEEEecc-----cc---------c---c----e---EEEEEEEEeeEEEecCCCCCCHH
Confidence 88999874 1 22344321 00 0 1 1 58899999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhcccCCCCCceEEEEEEccCCcCCCHHHHHHHHHHHHHHhCCCCCCCCCCCcccc
Q 001106 618 TLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFK 697 (1157)
Q Consensus 618 ~LQ~~AskklG~Sa~~Tm~iAQ~LYE~~k~~~~~~~GlITYPRTDS~~Ls~~~~~~i~~~i~~~~g~~~~~~~~~r~~~~ 697 (1157)
+||++||++|||||++||++||+|||. ||||||||||++||+++++.+++++ |..| .+|.+.
T Consensus 778 ~Lq~~a~~~~g~s~~~tm~iaQ~LYe~---------g~iTYpRTds~~l~~~~~~~~~~~~----~~~~----~~r~~~- 839 (1054)
T 1gku_B 778 TMLSDANRILKFSVKQTMQIAQELFEN---------GLITYHRTDSTRVSDVGQRIAKEYL----GDDF----VGREWG- 839 (1054)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHT---------TSBBCSSCCCCCCCHHHHHHHHHHH----TTSB----CCCCSC-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc---------CceeecCCCccccCHHHHHHHHHHh----hhhh----ccccCC-
Confidence 999999999999999999999999995 8999999999999999999888887 4434 244432
Q ss_pred ccccccccCCCCCCCcccCChhhhh----------CCCCHHHHHHHHHHHHHHHHccCCCcEEEEEEEEEEecCccEEEE
Q 001106 698 KVKNAQEAHEAIRPTDIRRLPAMLS----------GLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFR 767 (1157)
Q Consensus 698 k~k~~q~AH~AI~PT~~~~~p~~l~----------~~Ls~dE~klY~LI~rRfLAs~~~~a~~e~t~v~i~~~~~~~~F~ 767 (1157)
+++||||||||... .|+.+. ..|+++|++||+|||||||||||+||+|++|+|++.+++ ..|+
T Consensus 840 ----~~~aH~aI~Pt~~~-~~~~~~~~~~~~~~~~~~l~~~e~~lY~lI~~rfla~~~~~a~~~~t~v~~~~~~--~~f~ 912 (1054)
T 1gku_B 840 ----ESGAHECIRPTRPL-TRDDVQRLIQEGVLVVEGLRWEHFALYDLIFRRFMASQCRPFKVVVKKYSIEFDG--KTAE 912 (1054)
T ss_dssp ----SCCSCCCBCBSSSC-CHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHHHHTTBCCEEEEEEEEEEEETT--EEEE
T ss_pred ----CCCCCCCCCCCCCC-ChHHHhhhhhcccccccCCCHHHHHHHHHHHHHHHHHhCcceEEEEEEEEEEeCC--EEEE
Confidence 24899999999863 343321 159999999999999999999999999999999998864 4799
Q ss_pred EE-EEEEEEcCceecccccchhhhccccccchhhhhHHHhccCCCCCCeEEeeeEEeeecccCCC-CCCCHHHHHHHHHh
Q 001106 768 SS-CSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPP-ARYSEGSLVKKLEE 845 (1157)
Q Consensus 768 as-g~~i~~~Gw~~vy~~~~~~~~~~~e~~e~~~~~~~~~LP~l~~Gd~v~~~~~~i~e~~TkPP-~ryTEasLI~~MEk 845 (1157)
++ |.+++++||+.+|++. .+|.|++|+ +.+. .+++|+|| +||||++||++||+
T Consensus 913 ~~~~~~~~~~G~~~v~~~~--------------------~~~~l~~g~-~~~~----~~~~t~pp~~~~tea~Li~~Me~ 967 (1054)
T 1gku_B 913 EERIVRAEGRAYELYRAVW--------------------VKNELPTGT-FRVK----AEVKSVPKVLPFTQSEIIQMMKE 967 (1054)
T ss_dssp ECCEEEEESHHHHHSCCSC--------------------CCCCCCCEE-EEEE----BCCEEEESSCCBCHHHHHHHHHH
T ss_pred EEeeEEEEeCCceEEeccc--------------------cCCCCCCCc-eEEe----eeeeeCCCCCCCCHHHHHHhhhc
Confidence 99 5789999999999532 257888995 5432 78999998 79999999999999
Q ss_pred cCCCCCCchHHHHHhccccceEEEcCceeecccchhhhhhhhhcccccccChhhhHHHHHHhhhHhhcCccHHHHHHHHH
Q 001106 846 LGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYW 925 (1157)
Q Consensus 846 ~GIGTpATrA~IIe~L~~R~YV~~k~k~L~PT~lG~~vi~~L~~~f~~l~~p~~TA~~E~~Ld~Ia~G~~~~~~~l~~F~ 925 (1157)
.|||||||||+||++|++||||..++++|+||++|+.|+++|+..|+.|++|+|||+||+.|++|++|+.+|++||++|+
T Consensus 968 ~GIGtpaT~a~iI~~l~~r~Yv~~~~~~l~pT~~G~~l~~~l~~~~~~l~~~~~Ta~~E~~l~~I~~G~~~~~~~l~~~~ 1047 (1054)
T 1gku_B 968 RGIGRPSTYATIVDRLFMRNYVVEKYGRMIPTKLGIDVFRFLVRRYAKFVSEDRTRDLESRMDAIERGELDYLKALEDMY 1047 (1054)
T ss_dssp HTCCCTTTHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHHHHSCCGGGSHHHHHHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHhCCchhhcCCEEeEchHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999877779999999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 001106 926 SRFS 929 (1157)
Q Consensus 926 ~~f~ 929 (1157)
+.|.
T Consensus 1048 ~~~~ 1051 (1054)
T 1gku_B 1048 AEIK 1051 (1054)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 6
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=95.98 E-value=0.024 Score=55.13 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=74.2
Q ss_pred CCCeEEEEecchHHHHHHhhcCCCEEEEEeccccccccccCCCCCCCCCCcceEecccchHHHHHHHHHHhccCCeEEEc
Q 001106 347 SGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILA 426 (1157)
Q Consensus 347 ~~k~LiIaEkPskAk~Ia~~LG~~y~V~~s~GHl~dL~~~~~~v~p~~~f~~~~~v~~~kk~~lk~Lk~l~k~ad~IIlA 426 (1157)
+-+.+||||--+-...+.++++.+..+..+.|. ++ .+.+..|+.+.+ -..||+.
T Consensus 3 ~i~~vIVVEGk~D~~~L~~~~~~~~~iI~t~Gs---i~----------------------~~~l~~I~~~~~-~r~VIi~ 56 (119)
T 2fcj_A 3 RVEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGT---IS----------------------DARLEELADELE-GYDVYLL 56 (119)
T ss_dssp CCCEEEEESSHHHHHHHHHHBSSCCEEEECCSC---CC----------------------HHHHHHHHHHTT-TSEEEEE
T ss_pred ccCeEEEEechHHHHHHHHhcCCCCCEEEeCCc---cC----------------------HHHHHHHHHHhc-CCCEEEE
Confidence 347899999999999999987555557777663 21 245667777775 4689999
Q ss_pred cCCCccccHHHHHHHHHHhhcccccC-CccEEEEEEcccCHHHHHHHHHhccc
Q 001106 427 SDPDREGEAIAWHIVEMLQQQDALHE-NITVARVVFHEITEASIKVALQAARE 478 (1157)
Q Consensus 427 TDpDREGE~Ia~~Ile~l~~~~~~~~-~k~vkRl~fsslT~~aI~~A~~nlr~ 478 (1157)
||||+-||.|...|.+++......-. +.+ +=+..+++++|++||.+..-
T Consensus 57 TD~D~~GekIRk~i~~~lp~~~hafi~r~~---~gVE~a~~~~I~~aL~~~~~ 106 (119)
T 2fcj_A 57 ADADEAGEKLRRQFRRMFPEAEHLYIDRAY---REVAAAPIWHLAQVLLRARF 106 (119)
T ss_dssp CCSSHHHHHHHHHHHHHCTTSEEECCCTTT---CSTTTSCHHHHHHHHHHTTC
T ss_pred ECCCccHHHHHHHHHHHCCCCcEEeccCCc---cCcccCCHHHHHHHHHhccc
Confidence 99999999999999999854211000 011 14557899999999998764
No 7
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=95.46 E-value=0.011 Score=63.12 Aligned_cols=107 Identities=21% Similarity=0.389 Sum_probs=72.5
Q ss_pred CeEEEEecchHHHHHHh--hcCCCEEEEEeccccccccccCCCCCCCCCCcceEecccchHHHHHHHHHHhccCCeEEEc
Q 001106 349 KSVVVVESVTKAKVIQG--YLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILA 426 (1157)
Q Consensus 349 k~LiIaEkPskAk~Ia~--~LG~~y~V~~s~GHl~dL~~~~~~v~p~~~f~~~~~v~~~kk~~lk~Lk~l~k~ad~IIlA 426 (1157)
..|.|||.|.-.-+|.+ .+.+-|.|.- |||--| .++.|+ ++... +.++.| ...++||+|
T Consensus 80 ~~iCVVE~~~Dv~aiE~t~~y~G~YhVLg--G~lSPl----dGigP~-dL~i~--------~L~~Rl----~~V~EVIlA 140 (228)
T 1vdd_A 80 RTICVVEEPGDVIALERSGEYRGLYHVLH--GVLSPM----NGVGPD-KLHIK--------PLLPRV----GQGMEVILA 140 (228)
T ss_dssp TEEEEESSHHHHHHTTTTSSCCSEEEECS--SCCBGG----GTBCTT-TSTTG--------GGGGGC----CTTCEEEEC
T ss_pred CeEEEECCHHHHHHHHHhcccceEEEecC--CccCcc----cCCChh-hcCHH--------HHHHHh----CCCCEEEEe
Confidence 57999999998888875 3456687763 544333 245564 33321 111222 568999999
Q ss_pred cCCCccccHHHHHHHHHHhhcccccCCccEEEEEE--------cccCHHHHHHHHHhcccc
Q 001106 427 SDPDREGEAIAWHIVEMLQQQDALHENITVARVVF--------HEITEASIKVALQAAREI 479 (1157)
Q Consensus 427 TDpDREGE~Ia~~Ile~l~~~~~~~~~k~vkRl~f--------sslT~~aI~~A~~nlr~~ 479 (1157)
|+|+-|||+.+++|.+.|+. ...+|.|+-. -=+++-.+.+||.+.+++
T Consensus 141 tnpTvEGEaTA~YI~~~Lk~-----~~vkVTRiA~GiPvGgeLEY~De~TL~~Al~~R~~~ 196 (228)
T 1vdd_A 141 TGTTVEGDATALYLQRLLEP-----LGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTV 196 (228)
T ss_dssp CCSSHHHHHHHHHHHHHHTT-----SSCEEEECCBCBCTTCCGGGSCHHHHHHHHHTCEEE
T ss_pred CCCCchHHHHHHHHHHHHHH-----cCCCEEEecccCCCCcceeeccHHHHHHHHHcCccc
Confidence 99999999999999999864 2457888743 234566677777765544
No 8
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=94.90 E-value=0.0062 Score=74.77 Aligned_cols=55 Identities=7% Similarity=-0.215 Sum_probs=21.0
Q ss_pred CCCcc-ceeeeccCCCc-ceEEeCCCCCCCCCccccCCCCCCccccCHHHHHHHhcCCcccCCCCCCCcCeEEeeccCcc
Q 001106 1027 HPASK-EKVLLKSGPYG-FYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGF 1104 (1157)
Q Consensus 1027 cPkcG-k~V~lK~GrfG-~yv~c~~d~kg~~~k~~slpk~~~~~sItLe~Al~ll~~pk~lG~cP~cG~~v~v~~GryG~ 1104 (1157)
||+|| ..|..+.+++| .|++|+ ++|+|...... +..-..||+ |++++.+++++|.
T Consensus 575 CP~Cg~g~l~~r~~k~G~~f~gCs-----------~yp~C~f~~~~-----------~p~~~~Cp~-~~~l~~~~~~~gk 631 (633)
T 2gai_A 575 YLKCECGKTRSVKNDEIAVIDDGK-----------IFLGRKDSESG-----------SPDGRSVEG-KGNLSEKRRKGKK 631 (633)
T ss_dssp EEECSSSCCEECCTTSBCEEETTE-----------EEC------------------------------------------
T ss_pred CcccCCCcceeecccCCCeEEeCC-----------CCcCCCCeecC-----------CccCCcCCC-CCeEEEEccCCCC
Confidence 78898 88999999999 599997 34667653211 112246999 8888888887763
No 9
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=91.46 E-value=0.39 Score=50.91 Aligned_cols=107 Identities=25% Similarity=0.402 Sum_probs=67.5
Q ss_pred CeEEEEecchHHHHHHhh--cCCCEEEEEeccccccccccCCCCCCCCCCcceEecccchHHHHHHHHHHhccCCeEEEc
Q 001106 349 KSVVVVESVTKAKVIQGY--LGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILA 426 (1157)
Q Consensus 349 k~LiIaEkPskAk~Ia~~--LG~~y~V~~s~GHl~dL~~~~~~v~p~~~f~~~~~v~~~kk~~lk~Lk~l~k~ad~IIlA 426 (1157)
..|.|||.|.-.-+|.+. +.+-|.|.- |+|-- -.++.|+ ++. -.+.++.|++ .+..+||+|
T Consensus 94 ~~iCVVE~~~Dv~aiE~t~~y~G~YhVLg--G~iSP----ldGigP~-~L~--------i~~L~~Ri~~--~~v~EVIlA 156 (212)
T 3vdp_A 94 STICVVSHPMDVVAMEKVKEYKGVYHVLH--GVISP----IEGVGPE-DIR--------IKELLERVRD--GSVKEVILA 156 (212)
T ss_dssp EEEEEESSHHHHHHHHTTSCCCEEEEECS--SCCBT----TTTBCGG-GTT--------HHHHHHHHHH--SCCSEEEEC
T ss_pred CEEEEECCHHHHHHHHhhCccceEEEecC--CccCc----cCCCCcc-ccC--------HHHHHHHHhc--CCCcEEEEE
Confidence 469999999999999863 345575542 33321 1234443 222 1133333332 357899999
Q ss_pred cCCCccccHHHHHHHHHHhhcccccCCccEEEEEE--------cccCHHHHHHHHHhcc
Q 001106 427 SDPDREGEAIAWHIVEMLQQQDALHENITVARVVF--------HEITEASIKVALQAAR 477 (1157)
Q Consensus 427 TDpDREGE~Ia~~Ile~l~~~~~~~~~k~vkRl~f--------sslT~~aI~~A~~nlr 477 (1157)
|+|.-|||+-+..|.+.++. ...+|.|+=. -=+++-.+.+||.+.+
T Consensus 157 tnpTvEGeaTa~Yi~~~Lk~-----~~vkvTRiA~GiPvGgeLEY~D~~TL~~Al~~R~ 210 (212)
T 3vdp_A 157 TNPDIEGEATAMYIAKLLKP-----FGVKVTRIAHGIPVGGDLEYTDVVTLSKALEGRR 210 (212)
T ss_dssp CCSSHHHHHHHHHHHHHHTT-----TTCEEEECCBSBCTTCCGGGSCHHHHHHHHHTCE
T ss_pred CCCCccHHHHHHHHHHHhhh-----cCCCeeeccccCcCCcchhhccHHHHHHHHHhCc
Confidence 99999999999999999874 2457777642 2244555666665543
No 10
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=83.04 E-value=0.95 Score=43.93 Aligned_cols=68 Identities=24% Similarity=0.317 Sum_probs=46.7
Q ss_pred CeEEEEecchHHHHHHhhcCCCEEEEEeccccccccccCCCCCCCCCCcceEecccchHHHHHHHHHHhccCCeEEEccC
Q 001106 349 KSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASD 428 (1157)
Q Consensus 349 k~LiIaEkPskAk~Ia~~LG~~y~V~~s~GHl~dL~~~~~~v~p~~~f~~~~~v~~~kk~~lk~Lk~l~k~ad~IIlATD 428 (1157)
+.+||||=..-..++..+ |.+ .++++.|.- + .+.++.+.+..+.||+.||
T Consensus 21 ~~vIvVEGk~D~~~L~~~-g~~-~iI~t~Gta---------------------l-------~~~i~~l~~~~~~VIIltD 70 (118)
T 1t6t_1 21 EAVILVEGKNDKKALSKF-SIK-NVIDLSGKR---------------------Y-------ADVVDMLEGKWEKVILLFD 70 (118)
T ss_dssp TSEEEESSHHHHHHHHTT-TCC-CEEECTTSC---------------------H-------HHHHHHHTTTCSEEEECCC
T ss_pred CcEEEEEChHHHHHHHHh-CcC-cEEEECCCc---------------------H-------HHHHHHHHhCCCEEEEEEC
Confidence 458899966666666664 333 455555520 0 0134445556677999999
Q ss_pred CCccccHHHHHHHHHHhh
Q 001106 429 PDREGEAIAWHIVEMLQQ 446 (1157)
Q Consensus 429 pDREGE~Ia~~Ile~l~~ 446 (1157)
+|+.||.|...+.+++..
T Consensus 71 ~D~aGe~ir~~i~~~l~~ 88 (118)
T 1t6t_1 71 LDTHGERINQKMKELLSS 88 (118)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHhcCc
Confidence 999999999999999865
No 11
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=81.12 E-value=0.67 Score=42.36 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=42.9
Q ss_pred CCHHHHHHHH-HhcCCCCCCchHHHHHhccccceEEE----cCceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKL-EELGIGRPSTYASTLKVLQDRNYVTV----KSRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~M-Ek~GIGTpATrA~IIe~L~~R~YV~~----k~k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|.+.| +..|| +++|-..+|..|.++|||++ ..+.+.+|+.|+.+++.+.
T Consensus 23 ~~~~el~~~la~~l~i-s~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~~ 81 (99)
T 1tbx_A 23 IATYDLYKKVNAEFPM-STATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISLK 81 (99)
T ss_dssp CBHHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHHHH
Confidence 5677777666 55677 67889999999999999987 3457999999998776554
No 12
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=78.65 E-value=2.4 Score=41.86 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-------Cceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-------~k~L~PT~lG~~vi~~L~ 888 (1157)
.+..+|-+.| || +++|-..+|+.|.++|||++. ...+.+|+.|+.+++.+.
T Consensus 47 ~~~~eLa~~l---~~-~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~~ 104 (151)
T 4aik_A 47 QSQIQLAKAI---GI-EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQVD 104 (151)
T ss_dssp SCHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHHH
T ss_pred CcHHHHHHHH---Cc-CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHHH
Confidence 3555666555 56 678899999999999999863 236999999998776554
No 13
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=69.84 E-value=3.4 Score=39.75 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-------Cceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-------~k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| |+ +++|-..+|..|.++|||++. ...+.+|+.|+.+.+.+.
T Consensus 46 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 103 (145)
T 3g3z_A 46 RTQKHIGEKW---SL-PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLT 103 (145)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHH
Confidence 5566666555 55 567889999999999999973 135899999998766543
No 14
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=66.63 E-value=2.3 Score=41.00 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-------Cceeecccchhhhhhhhh
Q 001106 833 RYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 833 ryTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-------~k~L~PT~lG~~vi~~L~ 888 (1157)
..|..+|-+.| |+ +++|-..+|+.|.++|||++. ...+.+|+.|+.+.+.+.
T Consensus 54 ~~t~~ela~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~ 112 (148)
T 3nrv_A 54 DCSVQKISDIL---GL-DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
T ss_dssp SBCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHH
Confidence 34555565554 66 578889999999999999875 456999999998776654
No 15
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=65.80 E-value=3 Score=39.74 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-------Cceeecccchhhhhhhhh
Q 001106 832 ARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 832 ~ryTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-------~k~L~PT~lG~~vi~~L~ 888 (1157)
...|..+|-+.| |+ +++|-..+|+.|.++|||++. ...+.+|+.|+.+.+.+.
T Consensus 46 ~~~t~~ela~~l---~~-~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 105 (139)
T 3eco_A 46 DGLTQNDIAKAL---QR-TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFT 105 (139)
T ss_dssp TCEEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHH
T ss_pred CCcCHHHHHHHh---CC-CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHH
Confidence 345566666655 55 578899999999999999874 246899999998776554
No 16
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=65.70 E-value=2.7 Score=40.38 Aligned_cols=50 Identities=18% Similarity=0.109 Sum_probs=38.3
Q ss_pred CHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 835 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 835 TEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
|..+|-+.| |+ +++|-..+|+.|.++|||.+.. ..+.+|+.|+.+.+.+.
T Consensus 52 ~~~~la~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 108 (144)
T 3f3x_A 52 SMVYLANRY---FV-TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEAN 108 (144)
T ss_dssp EHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHHHH
Confidence 566666655 55 5678889999999999998742 25999999998776554
No 17
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=65.29 E-value=3.2 Score=40.94 Aligned_cols=49 Identities=22% Similarity=0.162 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 836 EGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 836 EasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
..+|-+.| |+ +++|-..+|+.|.++|||++.. ..+.+|+.|+.+.+.+.
T Consensus 70 ~~eLa~~l---~~-~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 125 (161)
T 3e6m_A 70 VGQLATLG---VM-EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEIS 125 (161)
T ss_dssp HHHHHHHT---TC-CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHH
T ss_pred HHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHH
Confidence 34554443 55 5678899999999999998742 36899999998776554
No 18
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=64.50 E-value=2.5 Score=39.17 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=36.3
Q ss_pred HHhcCCCCCCchHHHHHhccccceEEEcCceeecccchhhhhhhhhc
Q 001106 843 LEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSH 889 (1157)
Q Consensus 843 MEk~GIGTpATrA~IIe~L~~R~YV~~k~k~L~PT~lG~~vi~~L~~ 889 (1157)
++..|+. +++-..+++.|.+.|||++....+..|++|..+++.+..
T Consensus 27 a~~~~ls-~~~~~~~l~~L~~~GLI~~~~~~~~LT~kG~~~l~~l~~ 72 (95)
T 1r7j_A 27 MYGANLS-YALTGRYIKMLMDLEIIRQEGKQYMLTKKGEELLEDIRK 72 (95)
T ss_dssp HHHHTCC-HHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHHHH
T ss_pred HHHhCcC-HHHHHHHHHHHHHCCCeEEECCeeEEChhHHHHHHHHHH
Confidence 3344553 456667899999999999988889999999988877764
No 19
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=64.31 E-value=4.5 Score=40.33 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| || +++|-..+|+.|.++|||++.. ..+.+|+.|+.+++.+.
T Consensus 69 ~t~~eLa~~l---~i-~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 126 (166)
T 3deu_A 69 QSQIQLAKAI---GI-EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEME 126 (166)
T ss_dssp EEHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 3455666555 55 6788999999999999998742 36899999998776554
No 20
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=63.75 E-value=3.5 Score=39.89 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-------Cceeecccchhhhhhhhh
Q 001106 832 ARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 832 ~ryTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-------~k~L~PT~lG~~vi~~L~ 888 (1157)
...|..+|-+.| |+ +++|-..+|+.|.++|||++. ...+.+|+.|+.+.+.+.
T Consensus 56 ~~~t~~eLa~~l---~~-~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 115 (148)
T 3jw4_A 56 SGIIQKDLAQFF---GR-RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFN 115 (148)
T ss_dssp TCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH---CC-ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHH
Confidence 346677776555 56 578889999999999999764 236889999998776554
No 21
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=62.34 E-value=5.8 Score=39.94 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 832 ARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 832 ~ryTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
...|..+|-+.| || +++|-..+|..|.++|||++.. ..+.+|+.|+.++..+.
T Consensus 85 ~~~t~~eLa~~l---~i-s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 144 (181)
T 2fbk_A 85 EGLRPTELSALA---AI-SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLL 144 (181)
T ss_dssp SCBCHHHHHHHC---SC-CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH---CC-CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 345667776654 66 7888999999999999998741 25899999998776543
No 22
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=61.17 E-value=5.6 Score=38.54 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc---------Cceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK---------SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k---------~k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| |+ +++|-..+|+.|.++|||.+. ...+.+|+.|+.+.+.+.
T Consensus 52 ~t~~eLa~~l---~~-~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~ 111 (151)
T 3kp7_A 52 LTVGQITEKQ---GV-NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERK 111 (151)
T ss_dssp BCHHHHHHHH---CS-CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHH
Confidence 5566666555 55 578899999999999999862 125899999998776554
No 23
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=59.97 E-value=5.1 Score=39.25 Aligned_cols=51 Identities=24% Similarity=0.286 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-------Cceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-------~k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| |+ +++|-..+|+.|.++|||++. ...+.+|+.|+.+.+.+.
T Consensus 65 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 122 (159)
T 3s2w_A 65 INQESLSDYL---KI-DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMK 122 (159)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHHH
Confidence 3455565555 55 578999999999999999874 236899999998776554
No 24
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=59.54 E-value=6.6 Score=37.25 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 833 RYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 833 ryTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
..|..+|-+.| |+ +++|-..+|+.|.++|||.+.. ..+.+|+.|+.+.+.+.
T Consensus 50 ~~~~~ela~~l---~~-~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~~ 108 (141)
T 3bro_A 50 EVLQRDLESEF---SI-KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIIL 108 (141)
T ss_dssp CCBHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHH
T ss_pred CcCHHHHHHHH---CC-CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHHHH
Confidence 45677776665 56 5788899999999999998742 25889999998766544
No 25
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=59.28 E-value=6.8 Score=36.99 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-------Cceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-------~k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| |+ +++|-..+|..|.++|||.+. ...+.+|+.|..+...+.
T Consensus 44 ~~~~ela~~l---~~-s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~ 101 (138)
T 3bpv_A 44 IKQDELATFF---HV-DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLIL 101 (138)
T ss_dssp CBHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHHH
Confidence 4666666665 56 577888999999999999873 124889999998766543
No 26
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=58.10 E-value=6.2 Score=38.84 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-------Cceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-------~k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| || +++|-..+|..|.++|||++. ...+.+|+.|+.+++.+.
T Consensus 61 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 118 (162)
T 3k0l_A 61 LSNAKLAERS---FI-KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCN 118 (162)
T ss_dssp CCHHHHHHHH---TS-CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHH
Confidence 5666776665 56 678899999999999999874 135999999998776554
No 27
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=57.88 E-value=6.1 Score=40.33 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-----C--ceeecccchhhhhhhhh
Q 001106 833 RYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-----S--RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 833 ryTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-----~--k~L~PT~lG~~vi~~L~ 888 (1157)
..|..+|-..| || +++|-..+|..|.++|||++. + ..+.+|+.|+.+++.+.
T Consensus 57 ~~t~~eLa~~l---~i-s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 115 (189)
T 3nqo_A 57 ETTLNNIARKM---GT-SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCS 115 (189)
T ss_dssp GCCHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH
T ss_pred CcCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH
Confidence 45666666555 66 567889999999999999873 1 36899999998776554
No 28
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=57.58 E-value=4.7 Score=38.59 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=37.6
Q ss_pred CHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-------Cceeecccchhhhhhhhh
Q 001106 835 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 835 TEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-------~k~L~PT~lG~~vi~~L~ 888 (1157)
|..+|-+.| |+ +++|-..+|..|.++|||++. ...+.+|+.|+.+.+.+.
T Consensus 53 t~~eLa~~l---~~-~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 109 (143)
T 3oop_A 53 SQKEIALWT---KK-DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELR 109 (143)
T ss_dssp EHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHH
Confidence 445555554 55 578889999999999999874 235899999998776553
No 29
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=57.51 E-value=9.2 Score=37.05 Aligned_cols=51 Identities=18% Similarity=0.081 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| || +++|-..+|..|.++|||++.. ..+.+|+.|+.+++.+.
T Consensus 58 ~t~~ela~~l---~i-~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 115 (155)
T 3cdh_A 58 MMITRLAKLS---LM-EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLV 115 (155)
T ss_dssp BCHHHHHHHT---TC-CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHHH
Confidence 4556666554 66 5778888999999999998742 35899999998776554
No 30
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=57.27 E-value=6.4 Score=38.35 Aligned_cols=51 Identities=16% Similarity=-0.001 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| || +++|-..+|+.|.++|||++.. ..+.+|+.|+.+.+.+.
T Consensus 63 ~~~~ela~~l---~i-~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 120 (160)
T 3boq_A 63 LSMGKLSGAL---KV-TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQAS 120 (160)
T ss_dssp EEHHHHHHHC---SS-CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHHH
Confidence 3455665554 66 6889999999999999998742 24889999998776543
No 31
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=56.68 E-value=9.9 Score=36.32 Aligned_cols=51 Identities=16% Similarity=0.075 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-------Cceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-------~k~L~PT~lG~~vi~~L~ 888 (1157)
.|...|-+.| || +++|-..+|..|.++|||++. ...+.+|+.|+.++..+.
T Consensus 51 ~~~~~la~~l---~i-~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 108 (147)
T 2hr3_A 51 VTPSELAAAE---RM-RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNR 108 (147)
T ss_dssp BCHHHHHHHT---TC-CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHh---CC-ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHH
Confidence 4566666554 66 677888999999999999874 234899999998776553
No 32
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=55.77 E-value=8 Score=36.84 Aligned_cols=51 Identities=25% Similarity=0.265 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|.+.| |+ +++|-..+|..|.++|||.+.. ..+.+|+.|+.+...+.
T Consensus 48 ~~~~~la~~l---~~-s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 105 (145)
T 2a61_A 48 KRPGELSVLL---GV-AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVI 105 (145)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHHH
Confidence 4566666555 55 6778899999999999998741 25889999998776543
No 33
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=54.55 E-value=5.4 Score=38.20 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| || +++|-..+|+.|.++|||++.. ..+.+|+.|+.+.+.+.
T Consensus 52 ~t~~eLa~~l---~~-~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 109 (142)
T 3ech_A 52 LNLQDLGRQM---CR-DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAE 109 (142)
T ss_dssp CCHHHHHHHH---C----CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHH
T ss_pred cCHHHHHHHh---CC-CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHH
Confidence 5666776655 66 6788999999999999998632 24889999998776553
No 34
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=54.24 E-value=6.4 Score=38.29 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-------Cceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-------~k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|.+.| || +++|-..+|+.|.++|||.+. ...+.+|+.|+.++..+.
T Consensus 59 ~t~~ela~~l---~i-s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 116 (154)
T 2eth_A 59 KKMKEIAEFL---ST-TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEIL 116 (154)
T ss_dssp BCHHHHHHHT---TS-CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHHH
Confidence 4555565554 66 677889999999999999874 235889999998776543
No 35
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=53.93 E-value=12 Score=35.75 Aligned_cols=32 Identities=19% Similarity=0.531 Sum_probs=18.6
Q ss_pred CCCCCCCCceEEEEecccCceeEEecCCCCCCcccc
Q 001106 964 RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIA 999 (1157)
Q Consensus 964 g~CPkCGkg~lv~K~gr~G~~~F~GCsnyP~Ck~t~ 999 (1157)
.-||.||. +|..+.+.-.....+.|.+ |.+..
T Consensus 5 ~FCp~Cgn-~L~~~~~~~~~~~~~~C~~---C~y~~ 36 (113)
T 3h0g_I 5 QYCIECNN-MLYPREDKVDRVLRLACRN---CDYSE 36 (113)
T ss_dssp CCCSSSCC-CCEECCCTTTCCCCEECSS---SCCEE
T ss_pred eeCcCCCC-EeeEcccCCCCeeEEECCC---CCCeE
Confidence 46999996 6776654322223466753 55543
No 36
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=53.44 E-value=19 Score=38.01 Aligned_cols=63 Identities=21% Similarity=0.192 Sum_probs=47.0
Q ss_pred cCCCCCCchHHHHHhccccceEEEcC-ceeecccchhhhhhhhhcccccccChhhhHHHHHHhhhHhhcCccHHHH
Q 001106 846 LGIGRPSTYASTLKVLQDRNYVTVKS-RILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGL 920 (1157)
Q Consensus 846 ~GIGTpATrA~IIe~L~~R~YV~~k~-k~L~PT~lG~~vi~~L~~~f~~l~~p~~TA~~E~~Ld~Ia~G~~~~~~~ 920 (1157)
.|+ +++|-..+|++|.++|||.+.. +.+.+|+.|+.+...+.. .-..||..|..+. | .+++++
T Consensus 34 l~v-s~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~~~---------~~~~~e~~l~~~l-g-l~~ee~ 97 (226)
T 2qq9_A 34 LEQ-SGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMR---------KHRLAERLLTDII-G-LDINKV 97 (226)
T ss_dssp HTC-CHHHHHHHHHHHHHTTSEEECTTSBEEECHHHHHHHHHHHH---------HHHHHHHHHHHTT-C-CCHHHH
T ss_pred HCC-CHHHHHHHHHHHHHCCCEEEeCCCCeEECHHHHHHHHHHHH---------HHHHHHHHHHHHc-C-CCHHHH
Confidence 366 6888999999999999999864 569999999987765542 1357888876543 3 666554
No 37
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=52.48 E-value=19 Score=34.77 Aligned_cols=32 Identities=22% Similarity=0.602 Sum_probs=20.3
Q ss_pred CCCCCCCCceEEEEecccCceeEEecCCCCCCcccc
Q 001106 964 RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIA 999 (1157)
Q Consensus 964 g~CPkCGkg~lv~K~gr~G~~~F~GCsnyP~Ck~t~ 999 (1157)
.-||.||. +|..+..+......|.|.. |.+..
T Consensus 5 ~FCp~Cgn-lL~~~~~~~~~~~~~~C~~---C~y~~ 36 (122)
T 1twf_I 5 RFCRDCNN-MLYPREDKENNRLLFECRT---CSYVE 36 (122)
T ss_dssp CBCSSSCC-BCEEEEETTTTEEEEECSS---SSCEE
T ss_pred CcccccCc-cCcccccCcCCCCEEECCc---CCCee
Confidence 46999996 7776654333334678853 66543
No 38
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=51.82 E-value=9.7 Score=36.19 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|.+.| || +++|-..+|+.|.++|||.+.. ..+.+|+.|+.+.+.+.
T Consensus 53 ~t~~~la~~l---~~-s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 110 (146)
T 2fbh_A 53 PTQRELAQSV---GV-EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIE 110 (146)
T ss_dssp CBHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHH
T ss_pred CCHHHHHHHh---CC-ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHHH
Confidence 5666676655 56 5678888999999999998742 24889999998766543
No 39
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=51.03 E-value=8.3 Score=36.37 Aligned_cols=50 Identities=18% Similarity=0.399 Sum_probs=36.4
Q ss_pred CHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-----C--ceeecccchhhhhhhhh
Q 001106 835 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-----S--RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 835 TEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-----~--k~L~PT~lG~~vi~~L~ 888 (1157)
|..+|-+. .|+ +++|-..+|+.|.++|||.+. + ..+.+|+.|+.+.+.+.
T Consensus 49 ~~~ela~~---l~~-~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 105 (139)
T 3bja_A 49 SMSKLIEN---MGC-VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVD 105 (139)
T ss_dssp EHHHHHHH---CSS-CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHH---HCC-ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHHH
Confidence 34444443 366 578889999999999999873 1 24889999998766543
No 40
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=50.34 E-value=6.6 Score=38.33 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| || +++|-..+|+.|.++|||++.. ..+.+|+.|+.++..+.
T Consensus 64 ~t~~ela~~l---~i-s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 121 (162)
T 2fa5_A 64 SSASEVSDRT---AM-DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVA 121 (162)
T ss_dssp CCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHH
Confidence 4556666655 55 6688899999999999998743 45889999998776543
No 41
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=50.30 E-value=5.3 Score=39.11 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=37.3
Q ss_pred CHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-------Cceeecccchhhhhhhhh
Q 001106 835 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 835 TEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-------~k~L~PT~lG~~vi~~L~ 888 (1157)
|..+|-+.| || +++|-..+|+.|.++|||++. ...+.+|+.|+.+++.+.
T Consensus 53 t~~eLa~~l---~~-~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 109 (147)
T 4b8x_A 53 PMSKIGERL---MV-HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAAT 109 (147)
T ss_dssp EHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHHH
Confidence 344555444 55 578899999999999999873 235899999998776543
No 42
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=50.07 E-value=6.8 Score=37.98 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-------Cceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-------~k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| |+ +++|-..+|..|.++|||++. ...+.+|+.|+.+++.+.
T Consensus 56 ~~~~eLa~~l---~~-~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 113 (149)
T 4hbl_A 56 QTLNSIGRHL---DL-SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVF 113 (149)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHHH
Confidence 3556666665 55 578899999999999999864 236899999998776544
No 43
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=49.30 E-value=6 Score=38.28 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| || +++|-..+|+.|.++|||++.. ..+.+|+.|+.+++.+.
T Consensus 55 ~t~~eLa~~l---~i-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 112 (150)
T 3fm5_A 55 VNQRGVAATM---GL-DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAK 112 (150)
T ss_dssp CCSHHHHHHH---TC-CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHH
Confidence 5666777666 45 5788899999999999998632 24899999998776553
No 44
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=48.44 E-value=3.4 Score=39.52 Aligned_cols=51 Identities=14% Similarity=0.332 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| || +++|-..+|+.|.++|||.+.. ..+.+|+.|+.+.+.+.
T Consensus 44 ~t~~~la~~l---~~-s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 101 (144)
T 1lj9_A 44 IIQEKIAELI---KV-DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIV 101 (144)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHHH
Confidence 4455555554 55 5788889999999999998741 24889999998776554
No 45
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=47.90 E-value=6.2 Score=35.64 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHhcCCCCCCc-hHHHHHhccccceEEEc-----Cceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPST-YASTLKVLQDRNYVTVK-----SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpAT-rA~IIe~L~~R~YV~~k-----~k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| || +++| -..+|+.|.++|||... ...+.+|+.|+.+.+.+.
T Consensus 31 ~t~~eLa~~l---~i-s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~~~ 87 (95)
T 2pg4_A 31 PSLAEIVKAS---GV-SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAECLE 87 (95)
T ss_dssp CCHHHHHHHH---CC-CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHHHHH
Confidence 5677777666 67 5566 99999999999999842 235899999998876654
No 46
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=47.66 E-value=9.8 Score=36.76 Aligned_cols=51 Identities=25% Similarity=0.153 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEE--c----C---ceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTV--K----S---RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~--k----~---k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| |+ +++|-..+|..|.++|||.+ . + ..+.+|+.|+.+.+.+.
T Consensus 56 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~ 115 (154)
T 2qww_A 56 ISVADLTKRL---II-TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRST 115 (154)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHH
Confidence 4556666655 55 68899999999999999998 2 2 26899999998776654
No 47
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=47.63 E-value=11 Score=36.12 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcCceeecccchhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFL 887 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~k~L~PT~lG~~vi~~L 887 (1157)
.|..+|-+.| || +++|-..+|++|.++|||.+..+.+.+|+.|..+...+
T Consensus 32 ~s~~ela~~l---~i-s~~tv~~~l~~Le~~Gli~r~~~~~~Lt~~g~~~~~~~ 81 (139)
T 2x4h_A 32 AKINRIAKDL---KI-APSSVFEEVSHLEEKGLVKKKEDGVWITNNGTRSINYL 81 (139)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHH
T ss_pred cCHHHHHHHh---CC-ChHHHHHHHHHHHHCCCEEecCCeEEEChhHHHHHHHH
Confidence 4555555544 77 57788899999999999998778899999999765543
No 48
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=46.66 E-value=6.9 Score=38.73 Aligned_cols=51 Identities=16% Similarity=0.065 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| || +++|-..+|..|.++|||++.. ..+.+|+.|+.+++.+.
T Consensus 63 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 120 (168)
T 3u2r_A 63 MATLQIADRL---IS-RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLE 120 (168)
T ss_dssp EEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHHH
Confidence 3445555544 55 4679999999999999998742 26899999998776554
No 49
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=46.14 E-value=13 Score=35.68 Aligned_cols=51 Identities=12% Similarity=0.166 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| || +++|-..+|..|.++|||.+.. ..+.+|+.|+.+.+.+.
T Consensus 55 ~t~~ela~~l---~~-~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 112 (152)
T 3bj6_A 55 ATAPQLGAAL---QM-KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIR 112 (152)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHHH
Confidence 4555665555 56 5778889999999999998742 26889999998766543
No 50
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=45.36 E-value=8.1 Score=37.39 Aligned_cols=50 Identities=24% Similarity=0.194 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFL 887 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L 887 (1157)
.|..+|-+.| || +++|-..+|..|.++|||++.. ..+.+|+.|+.+.+.+
T Consensus 62 ~t~~ela~~l---~~-s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 118 (153)
T 2pex_A 62 RSVSEIGERL---YL-DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKA 118 (153)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGGS
T ss_pred cCHHHHHHHh---CC-CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHHH
Confidence 3455565554 66 6788899999999999998742 2589999999876544
No 51
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=44.88 E-value=8.7 Score=36.75 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-------Cceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-------~k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| |+ +++|-..+|+.|.++|||++. ...+.+|+.|+.+.+.+.
T Consensus 51 ~t~~eLa~~l---~~-~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 108 (140)
T 3hsr_A 51 LNIKKLGERV---FL-DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLA 108 (140)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHH
T ss_pred cCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHHH
Confidence 3445565555 56 688999999999999999874 236899999998776553
No 52
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=44.72 E-value=11 Score=36.17 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-------Cceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-------~k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| |+ +++|-..+|+.|.++|||.+. ...+.+|+.|+.+++.+.
T Consensus 57 ~t~~ela~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 114 (150)
T 2rdp_A 57 LTVGELSNKM---YL-ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVI 114 (150)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHH
Confidence 4555665554 55 678888999999999999873 235889999998776554
No 53
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=43.86 E-value=9.3 Score=46.56 Aligned_cols=55 Identities=24% Similarity=0.296 Sum_probs=47.9
Q ss_pred CCeEEeeeEEeeecccCCCCCCCHHHHHHHHH-hcCCCCCCchHHHHHhccccceEE
Q 001106 813 GDPLYLGEVELKQHHTQPPARYSEGSLVKKLE-ELGIGRPSTYASTLKVLQDRNYVT 868 (1157)
Q Consensus 813 Gd~v~~~~~~i~e~~TkPP~ryTEasLI~~ME-k~GIGTpATrA~IIe~L~~R~YV~ 868 (1157)
+..+.|.++.-+++...||++|+-++|.+.+- +.|++..-|.. |.+.|++.|||.
T Consensus 263 ~~~~~V~~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~tm~-iAQ~LYE~glIT 318 (592)
T 1mw9_X 263 KARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMM-MAQRLYEAGYIT 318 (592)
T ss_dssp HCCEEEEEEEEEEEEECCCCCBCHHHHHHHHHHHHCCCHHHHHH-HHHHHHHTTSBC
T ss_pred CCCeEEEEEEEEEEeccCCCCccHHHHHHHHHHhhCCCHHHHHH-HHHHHHhCCeee
Confidence 34577889999999999999999999999885 67998887775 999999999995
No 54
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=43.06 E-value=37 Score=35.77 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-CceeecccchhhhhhhhhcccccccChhhhHHHHHHhhhHhhcCc
Q 001106 837 GSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-SRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLT 915 (1157)
Q Consensus 837 asLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-~k~L~PT~lG~~vi~~L~~~f~~l~~p~~TA~~E~~Ld~Ia~G~~ 915 (1157)
..|-+.| |+ +++|-..+|..|.++|||++. .+.+..|+.|+.+...+.. ....||..|..+.. .
T Consensus 28 ~~La~~l---~v-s~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~~~---------~~~~~e~~l~~~lg--~ 92 (230)
T 1fx7_A 28 ARIAERL---DQ-SGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMR---------KHRLAERLLVDVIG--L 92 (230)
T ss_dssp HHHHHHH---TC-CHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHHHH---------HHHHHHHHHHHTTC--C
T ss_pred HHHHHHH---Cc-CHHHHHHHHHHHHHCCCEEEeCCccEEECHHHHHHHHHHHH---------HHHHHHHHHHHhcC--C
Confidence 4555444 67 678899999999999999985 4579999999987654432 23567777754443 5
Q ss_pred cHHHHHHH
Q 001106 916 EWKGLLVD 923 (1157)
Q Consensus 916 ~~~~~l~~ 923 (1157)
+|+++...
T Consensus 93 ~~~~~~~~ 100 (230)
T 1fx7_A 93 PWEEVHAE 100 (230)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 66555443
No 55
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=42.54 E-value=4.3 Score=38.71 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-------Cceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-------~k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| |+ +++|-..+|+.|.++|||.+. ...+.+|+.|+.+++.+.
T Consensus 54 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~ 111 (127)
T 2frh_A 54 YYLKDIINHL---NY-KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLL 111 (127)
T ss_dssp EEHHHHHHHS---SS-HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 4555665544 55 468899999999999999873 235889999998776554
No 56
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=42.37 E-value=17 Score=34.44 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| |+ +++|-..+|..|.++|||.+.. ..+.+|+.|..+...+.
T Consensus 52 ~~~~ela~~l---~~-~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 109 (142)
T 2bv6_A 52 VNVKKVVTEL---AL-DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELS 109 (142)
T ss_dssp EEHHHHHHHT---TC-CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHT
T ss_pred cCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHHH
Confidence 3455555555 66 6788999999999999998742 25889999998776543
No 57
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=41.62 E-value=11 Score=36.88 Aligned_cols=50 Identities=26% Similarity=0.167 Sum_probs=37.5
Q ss_pred CHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 835 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 835 TEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
|..+|-+.| || +++|-..+|+.|.++|||.+.. ..+.+|+.|+.+.+.+.
T Consensus 68 t~~ela~~l---~i-s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 124 (162)
T 3cjn_A 68 PIGTLGIFA---VV-EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLW 124 (162)
T ss_dssp EHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 445565554 66 5778889999999999998741 35889999998766543
No 58
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=41.46 E-value=12 Score=36.01 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=37.0
Q ss_pred CHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 835 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 835 TEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
|..+|-+.| || +++|-..+|..|.++|||++.. ..+.+|+.|+.+.+.+.
T Consensus 53 t~~ela~~l---~~-s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 109 (155)
T 1s3j_A 53 KVSEIAERM---EV-KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVL 109 (155)
T ss_dssp EHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHHH
Confidence 444555444 66 5788889999999999998742 25889999998766543
No 59
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=40.98 E-value=9.3 Score=39.79 Aligned_cols=52 Identities=21% Similarity=0.063 Sum_probs=39.8
Q ss_pred CHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhhcc
Q 001106 835 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLSHY 890 (1157)
Q Consensus 835 TEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~~~ 890 (1157)
|..+|-+.| || +++|-..+|..|.++|||.+.. ..+.+|+.|+.+.+.+...
T Consensus 64 t~~eLa~~l---~i-~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 122 (207)
T 2fxa_A 64 SISEIAKFG---VM-HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEE 122 (207)
T ss_dssp EHHHHHHHT---TC-CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHHHH
Confidence 445555544 55 6889999999999999998742 2689999999888776643
No 60
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=39.45 E-value=13 Score=36.74 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=37.2
Q ss_pred CHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-----C--ceeecccchhhhhhhhh
Q 001106 835 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-----S--RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 835 TEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-----~--k~L~PT~lG~~vi~~L~ 888 (1157)
|..+|-+.| || +++|-..+|+.|.++|||.+. + ..+.+|+.|+.+++.+.
T Consensus 61 t~~eLa~~l---~i-s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 117 (168)
T 2nyx_A 61 NLATLATLL---GV-QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVT 117 (168)
T ss_dssp EHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHh---CC-CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH
Confidence 445565555 55 678888999999999999873 1 24889999998766543
No 61
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=38.78 E-value=11 Score=35.50 Aligned_cols=50 Identities=14% Similarity=0.103 Sum_probs=37.0
Q ss_pred CHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 835 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 835 TEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
|..+|.+. .|+ +++|-..+|+.|.++|||++.. ..+.+|+.|+.+.+.+.
T Consensus 50 ~~~~la~~---l~~-~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 106 (138)
T 1jgs_A 50 TPVELKKV---LSV-DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCH 106 (138)
T ss_dssp CHHHHHHH---HTC-CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHH---HCC-ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHH
Confidence 45555543 366 6778889999999999998731 24889999998766543
No 62
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=37.93 E-value=16 Score=34.78 Aligned_cols=51 Identities=10% Similarity=0.003 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-----C--ceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-----S--RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-----~--k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| || +++|-..+|..|.++|||.+. + ..+.+|+.|+.+++.+.
T Consensus 51 ~~~~ela~~l---~~-s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 108 (146)
T 2gxg_A 51 KTMAYLANRY---FV-TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGI 108 (146)
T ss_dssp BCHHHHHHHT---TC-CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHh---CC-CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHHH
Confidence 4566666554 66 577888999999999999874 1 25889999998766543
No 63
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=37.32 E-value=10 Score=34.30 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEE--cCc--eeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTV--KSR--ILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~--k~k--~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| || +++|-..+|..|.++|||.. ++| .+.+|+.|+.+.+.+.
T Consensus 31 ~t~~eLa~~l---~i-~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~~ 85 (95)
T 2qvo_A 31 VYIQYIASKV---NS-PHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIK 85 (95)
T ss_dssp EEHHHHHHHS---SS-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHH---Cc-CHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHHH
Confidence 3444554443 66 56889999999999999943 233 6899999998776554
No 64
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=36.52 E-value=43 Score=31.58 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHhcCC-C---CC-CchHHHHHhccccceEEEc-----C---ceeecccchhhhhh
Q 001106 834 YSEGSLVKKLEELGI-G---RP-STYASTLKVLQDRNYVTVK-----S---RILYPEFRGRMVSA 885 (1157)
Q Consensus 834 yTEasLI~~MEk~GI-G---Tp-ATrA~IIe~L~~R~YV~~k-----~---k~L~PT~lG~~vi~ 885 (1157)
.+-.+|.+.|++.|. + ++ +|-..++..|.+.|||+.. + +.+..|+.|+.+..
T Consensus 27 ~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~ 91 (118)
T 2esh_A 27 SHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLR 91 (118)
T ss_dssp BCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHH
Confidence 345678888887664 2 68 9999999999999999753 1 24689999997543
No 65
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=34.88 E-value=32 Score=30.67 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC------ceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~------k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|.+.| || +++|-..+|+.|.++|||.+.. ..+..|+.|..+...+.
T Consensus 35 ~s~~ela~~l---~i-s~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~~~ 91 (109)
T 1sfx_A 35 MRVSEIAREL---DL-SARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEFK 91 (109)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHHHH
Confidence 5666666665 66 5688899999999999998631 24678888887766554
No 66
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=34.76 E-value=18 Score=34.41 Aligned_cols=50 Identities=10% Similarity=0.142 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFL 887 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L 887 (1157)
.|..+|-+.| |+ +++|-..+|..|.++|||++.. ..+.+|+.|..+...+
T Consensus 52 ~t~~eLa~~l---~~-s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~ 108 (146)
T 3tgn_A 52 LTNSELARRL---NV-SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEH 108 (146)
T ss_dssp CCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHH
Confidence 6777777776 56 5678889999999999998632 3699999999876655
No 67
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=34.21 E-value=26 Score=34.27 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc------Cceeecccchhhhhhhh
Q 001106 833 RYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK------SRILYPEFRGRMVSAFL 887 (1157)
Q Consensus 833 ryTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k------~k~L~PT~lG~~vi~~L 887 (1157)
..|..+|-+.| || +++|-..+|+.|.++|||... ...+.+|+.|+.+++.+
T Consensus 52 ~~t~~eLa~~l---~~-~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~~~~ 108 (148)
T 4fx0_A 52 DLTMSELAARI---GV-ERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQKA 108 (148)
T ss_dssp --CHHHHHHHH---TC-CHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHHHHHH
T ss_pred CcCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHHHHHH
Confidence 45666776655 44 467889999999999999542 23699999999876654
No 68
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=34.13 E-value=19 Score=33.30 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=36.4
Q ss_pred CHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 835 SEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 835 TEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
+-.+|.+.|. || +++|-..+++.|.+.|||++.. ..+.+|+.|+.+...+.
T Consensus 29 ~~~eLa~~l~--~i-s~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~~~~ 86 (107)
T 2hzt_A 29 RTSELKRLMP--NI-TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGILD 86 (107)
T ss_dssp CHHHHHHHCT--TS-CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHH
T ss_pred CHHHHHHHhc--CC-CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHHHHHH
Confidence 3344554432 44 6778899999999999998642 25899999998766554
No 69
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=33.21 E-value=13 Score=35.17 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-------Cceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-------~k~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|-+.| || +++|-..+|+.|.++|||.+. ...+.+|+.|+.+.+.+.
T Consensus 51 ~t~~ela~~l---~~-s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 108 (142)
T 2fbi_A 51 MESYQLANQA---CI-LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMS 108 (142)
T ss_dssp EEHHHHHHHT---TC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHHH
Confidence 3444554443 56 577888999999999999874 124889999998766543
No 70
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=32.43 E-value=20 Score=33.80 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-------Cceeecccchhhhh-hhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVS-AFL 887 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-------~k~L~PT~lG~~vi-~~L 887 (1157)
.|..+|-+.| || +++|-..+|+.|.++|||.+. ...+.+|+.|+.+. ..+
T Consensus 46 ~~~~ela~~l---~i-s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~~~ 103 (142)
T 3bdd_A 46 LHQLALQERL---QI-DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNP 103 (142)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHTTSC
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 4555666554 66 678888999999999999874 23588999999876 443
No 71
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=32.07 E-value=39 Score=28.11 Aligned_cols=33 Identities=24% Similarity=0.572 Sum_probs=19.7
Q ss_pred CCCCCCCCCceEEEEecc-----cCceeEEecCCCCCCccc
Q 001106 963 DRSCPVCGEGTLIFKVSR-----FGAGYFIGCNQHPRCNYI 998 (1157)
Q Consensus 963 ~g~CPkCGkg~lv~K~gr-----~G~~~F~GCsnyP~Ck~t 998 (1157)
...||+||...+.....+ -+...||-|.+ |...
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~---Cg~~ 52 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTK---CGHT 52 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESS---SCCE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCC---CCCE
Confidence 468999998655432211 13346888854 7654
No 72
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=32.05 E-value=16 Score=36.07 Aligned_cols=33 Identities=21% Similarity=0.537 Sum_probs=20.7
Q ss_pred CCCCCCCCCceEEEEecccCceeEEecCCCCCCcccc
Q 001106 963 DRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIA 999 (1157)
Q Consensus 963 ~g~CPkCGkg~lv~K~gr~G~~~F~GCsnyP~Ck~t~ 999 (1157)
..-||.||. +|..+.++-+....|.|. .|.|..
T Consensus 24 ~~FCPeCgN-mL~pked~~~~~l~~~Cr---tCgY~~ 56 (133)
T 3qt1_I 24 FRFCRDCNN-MLYPREDKENNRLLFECR---TCSYVE 56 (133)
T ss_dssp CCBCTTTCC-BCBCCBCTTTCCBCCBCS---SSCCBC
T ss_pred CeeCCCCCC-EeeECccCCCceeEEECC---CCCCcE
Confidence 567999996 776665433233456785 366654
No 73
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=31.87 E-value=21 Score=33.42 Aligned_cols=55 Identities=18% Similarity=0.176 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc---Cceeecccchhhhhhhhh
Q 001106 831 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK---SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 831 P~ryTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k---~k~L~PT~lG~~vi~~L~ 888 (1157)
|.+.|-.+|-+.|+ || +++|-..++..|.+.|+|++. ...+..|+.|+.+...+.
T Consensus 40 ~~~~~~~eL~~~l~--gi-s~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~l~~~l~ 97 (111)
T 3df8_A 40 STRQNFNDIRSSIP--GI-SSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVRNSLM 97 (111)
T ss_dssp SSCBCHHHHHHTST--TC-CHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcc--CC-CHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHHHHHHHHH
Confidence 44444555654442 44 567889999999999999886 457899999998877665
No 74
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=31.23 E-value=14 Score=35.25 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=32.0
Q ss_pred CCCCCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhh
Q 001106 847 GIGRPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFL 887 (1157)
Q Consensus 847 GIGTpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L 887 (1157)
|| +++|-..+|..|.++|||++.. ..+.+|+.|+.+.+.+
T Consensus 65 ~~-~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~~ 111 (147)
T 1z91_A 65 YL-DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKA 111 (147)
T ss_dssp TC-CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGT
T ss_pred CC-CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHH
Confidence 56 6788889999999999998742 2488999999876544
No 75
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=30.73 E-value=28 Score=33.91 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-Cceeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-SRILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-~k~L~PT~lG~~vi~~L~ 888 (1157)
.|...|-+. .|| +++|-..+|..|.+.|||.+. ++.+.+|+.|..+...+.
T Consensus 55 ~~~~~la~~---l~v-s~~tvs~~l~~Le~~Glv~r~~~~~~~lT~~g~~~~~~~~ 106 (155)
T 2h09_A 55 ARQVDMAAR---LGV-SQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESR 106 (155)
T ss_dssp CCHHHHHHH---HTS-CHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHH---hCc-CHHHHHHHHHHHHHCCCEEEecCCceEEChhHHHHHHHHH
Confidence 355555544 478 567788899999999999875 678999999998765543
No 76
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=30.71 E-value=23 Score=43.60 Aligned_cols=55 Identities=16% Similarity=0.302 Sum_probs=47.6
Q ss_pred CCeEEeeeEEeeecccCCCCCCCHHHHHHHHH-hcCCCCCCchHHHHHhccc-cceEE
Q 001106 813 GDPLYLGEVELKQHHTQPPARYSEGSLVKKLE-ELGIGRPSTYASTLKVLQD-RNYVT 868 (1157)
Q Consensus 813 Gd~v~~~~~~i~e~~TkPP~ryTEasLI~~ME-k~GIGTpATrA~IIe~L~~-R~YV~ 868 (1157)
+..+.|.++..+++...||.+|+-.+|.+.+- +.|++..-|. .|.+.|++ .|||.
T Consensus 271 ~~~~~V~~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~Tm-~iAQ~LYE~~glIT 327 (659)
T 1i7d_A 271 GQPAIVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVL-DICQKLYETHKLIT 327 (659)
T ss_dssp SCEEECCEEEEEEEEECCCCSBCHHHHHHHHHHHHCCCHHHHH-HHHHHHHHTSCCBS
T ss_pred cCCeEEEEEEeEEEEecCCCCccHHHHHHHHHHhcCCCHHHHH-HHHHHHHHhCCeEe
Confidence 45788899999999999999999999999985 5799877666 68999999 79985
No 77
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=30.48 E-value=24 Score=46.13 Aligned_cols=55 Identities=18% Similarity=0.371 Sum_probs=47.9
Q ss_pred CCeEEeeeEEeeecccCCCCCCCHHHHHHHHH-hcCCCCCCchHHHHHhccccceEE
Q 001106 813 GDPLYLGEVELKQHHTQPPARYSEGSLVKKLE-ELGIGRPSTYASTLKVLQDRNYVT 868 (1157)
Q Consensus 813 Gd~v~~~~~~i~e~~TkPP~ryTEasLI~~ME-k~GIGTpATrA~IIe~L~~R~YV~ 868 (1157)
+..+.|.++..+++...||++||-.+|.+.+- +.|++..-|.. |.+.|++.|||.
T Consensus 795 ~~~~~V~~v~~k~~~~~pp~pf~t~~Lq~~a~~~~g~s~~~tm~-iaQ~LYe~g~iT 850 (1104)
T 4ddu_A 795 DDVVTVVELQEAEEEKNPLPPYTTSSALSEISQKLRLGVQEVMD-ILQDLFEKGFIT 850 (1104)
T ss_dssp CCEEEEEEEEEEEEEECCCCCBCHHHHHHHHHHHSSCCHHHHHH-HHHHHHHTTSBS
T ss_pred CCcEEEEEEEeeeEEecCCCCCCHHHHHHHHHHHcCCCHHHHHH-HHHHHHhCCcee
Confidence 56778889999999999999999999999886 56998877775 799999999985
No 78
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=30.24 E-value=54 Score=35.03 Aligned_cols=75 Identities=25% Similarity=0.244 Sum_probs=49.8
Q ss_pred CCeEEEEecchHHHHHHhhcCCCEEEEEeccccccccccCCCCCCCCCCcceEecccchHHHHHHHHHHhccCCeEEEcc
Q 001106 348 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILAS 427 (1157)
Q Consensus 348 ~k~LiIaEkPskAk~Ia~~LG~~y~V~~s~GHl~dL~~~~~~v~p~~~f~~~~~v~~~kk~~lk~Lk~l~k~ad~IIlAT 427 (1157)
.+.|||+|.+--|-++..+.|..+.|. +.|.-. .. ..+.+...-.++.+...||+|.
T Consensus 150 ~~~v~i~EG~~Dals~~~~~g~~~~v~-slg~~~---------------~~-------~~~~l~~~~~~l~~~~~iil~~ 206 (255)
T 1nui_A 150 GKKIVVTEGEIDMLTVMELQDCKYPVV-SLGHGA---------------SA-------AKKTCAANYEYFDQFEQIILMF 206 (255)
T ss_dssp BSCCEEESSHHHHHHHHHHHTTCSCEE-CCTTTT---------------TT-------HHHHHHHTHHHHTTBSCEEEEC
T ss_pred CCEEEEEeCHHHHHHHHHhhCCCcEEE-ECCCcc---------------ch-------hHHHHHHHHHHhcCCCEEEEEe
Confidence 478999999998888887766544232 222111 10 1123332223445668999999
Q ss_pred CCCccccHHHHHHHHHHh
Q 001106 428 DPDREGEAIAWHIVEMLQ 445 (1157)
Q Consensus 428 DpDREGE~Ia~~Ile~l~ 445 (1157)
|.|.-|+.-+..+.+.+.
T Consensus 207 D~D~aG~~aa~~~~~~l~ 224 (255)
T 1nui_A 207 DMDEAGRKAVEEAAQVLP 224 (255)
T ss_dssp CSSHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHhcc
Confidence 999999999999998874
No 79
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=28.52 E-value=16 Score=34.27 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-------Cceeecccchhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-------SRILYPEFRGRMVSAFL 887 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-------~k~L~PT~lG~~vi~~L 887 (1157)
.|..+|-+.| |+ +++|-..+|+.|.++|||.+. ...+.+|+.|+.+.+.+
T Consensus 53 ~t~~ela~~l---~~-~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 109 (140)
T 2nnn_A 53 CPQNQLGRLT---AM-DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAG 109 (140)
T ss_dssp BCHHHHHHHT---TC-CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHH
Confidence 3445555443 55 567888999999999999873 12588999999876554
No 80
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=28.44 E-value=41 Score=32.38 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCC-CCCchHHHHHhccccceEEEc--------Cceeecccchhhhhhh
Q 001106 837 GSLVKKLEELGIG-RPSTYASTLKVLQDRNYVTVK--------SRILYPEFRGRMVSAF 886 (1157)
Q Consensus 837 asLI~~MEk~GIG-TpATrA~IIe~L~~R~YV~~k--------~k~L~PT~lG~~vi~~ 886 (1157)
-.|.+.+++.|++ .++|--.++.+|.+.|||... .+.+..|+.|+.....
T Consensus 37 Yei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~ 95 (123)
T 3ri2_A 37 YALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLRE 95 (123)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHH
Confidence 4688888877544 467888899999999999763 2346699999975443
No 81
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=28.15 E-value=17 Score=38.20 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHhccccceEEEcCceeecccchhhhhhhhhccccccc
Q 001106 837 GSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVT 895 (1157)
Q Consensus 837 asLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~k~L~PT~lG~~vi~~L~~~f~~l~ 895 (1157)
.+|-+.| |++ ++|-..++++|.+.|||+...+.+..|+.|+.+...+...+.++.
T Consensus 34 ~~LA~~L---gvS-~~SV~~~lkkL~e~GLV~~~~~Gv~LTe~G~~~A~~i~~rhr~~~ 88 (200)
T 2p8t_A 34 KQISERL---ELG-EGSVRTLLRKLSHLDIIRSKQRGHFLTLKGKEIRDKLLSMFSEPI 88 (200)
T ss_dssp HHHHHHH---TCC-HHHHHHHHHHHHHTTSEEEC--CEEECHHHHHHHHHHHTTBCCCE
T ss_pred HHHHHHh---CCC-HHHHHHHHHHHHHCCCEEEeCCCeEECHHHHHHHHHHHHHHHHhc
Confidence 3444444 565 667778999999999999877889999999988776655444443
No 82
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=27.79 E-value=18 Score=34.72 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc-Cceeecccchhhhhhhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK-SRILYPEFRGRMVSAFL 887 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k-~k~L~PT~lG~~vi~~L 887 (1157)
.|..+|-+.| ||. ++|-..+|..|.+.|||.+. ++.+.+|+.|+.+...+
T Consensus 23 ~~~~ela~~l---~vs-~~tvs~~l~~Le~~Glv~r~~~~~~~LT~~g~~~~~~~ 73 (142)
T 1on2_A 23 ARVSDIAEAL---AVH-PSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKRL 73 (142)
T ss_dssp CCHHHHHHHH---TSC-HHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHh---CCC-HHHHHHHHHHHHHCCCEEEeeCceEEEchhHHHHHHHH
Confidence 4455555444 774 67788899999999999875 46799999999876554
No 83
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=27.67 E-value=10 Score=35.44 Aligned_cols=54 Identities=9% Similarity=0.132 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHh-cCCCCCCchHHHHHhccccceEEEc--Cc---eeecccchhhhhhhhh
Q 001106 834 YSEGSLVKKLEE-LGIGRPSTYASTLKVLQDRNYVTVK--SR---ILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 834 yTEasLI~~MEk-~GIGTpATrA~IIe~L~~R~YV~~k--~k---~L~PT~lG~~vi~~L~ 888 (1157)
.|..+|.+.|.. .+| +++|-..+|+.|.++|||.+. ++ .+..|+.|..+...+.
T Consensus 25 ~t~~ela~~l~~~~~~-s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~~~ 84 (123)
T 1okr_A 25 ASANNIIEEIQMQKDW-SPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSK 84 (123)
T ss_dssp EEHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHHH
T ss_pred cCHHHHHHHHhccCCC-cHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHHHHH
Confidence 566777777642 233 578999999999999999864 33 2678999987765543
No 84
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=27.32 E-value=42 Score=31.71 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCC----CCCchHHHHHhccccceEEEc---------Cceeecccchhhhhh
Q 001106 836 EGSLVKKLEELGIG----RPSTYASTLKVLQDRNYVTVK---------SRILYPEFRGRMVSA 885 (1157)
Q Consensus 836 EasLI~~MEk~GIG----TpATrA~IIe~L~~R~YV~~k---------~k~L~PT~lG~~vi~ 885 (1157)
--.|.+.+++.+-| .++|--.++..|.+.|||+.. .+.+..|+.|+....
T Consensus 28 Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~ 90 (116)
T 3f8b_A 28 VYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMR 90 (116)
T ss_dssp HHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHH
Confidence 35677888764322 578888999999999999753 124678999987543
No 85
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=26.65 E-value=29 Score=35.30 Aligned_cols=30 Identities=27% Similarity=0.566 Sum_probs=20.4
Q ss_pred CCCCCCCCCceEEEEecccCceeEEecCC----CCCCcccc
Q 001106 963 DRSCPVCGEGTLIFKVSRFGAGYFIGCNQ----HPRCNYIA 999 (1157)
Q Consensus 963 ~g~CPkCGkg~lv~K~gr~G~~~F~GCsn----yP~Ck~t~ 999 (1157)
..+||.|+ |.++... + .|-|.+ |.+|.|..
T Consensus 78 l~~CP~C~-G~l~y~~---~---~Y~C~G~isewtkC~~~t 111 (160)
T 2riq_A 78 LLPCEECS-GQLVFKS---D---AYYCTGDVTAWTKCMVKT 111 (160)
T ss_dssp ECCCTTTC-CCEEEET---T---EEEECCEEETTEECCCEE
T ss_pred CCCCCCCC-CEEEEeC---C---eEEECCCCCCcccCcccC
Confidence 45899999 6766543 2 355876 46798864
No 86
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=26.55 E-value=41 Score=31.98 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCC--CCCchHHHHHhccccceEEEc---------Cceeecccchhhhhhh
Q 001106 836 EGSLVKKLEELGIG--RPSTYASTLKVLQDRNYVTVK---------SRILYPEFRGRMVSAF 886 (1157)
Q Consensus 836 EasLI~~MEk~GIG--TpATrA~IIe~L~~R~YV~~k---------~k~L~PT~lG~~vi~~ 886 (1157)
=-+|.+.|++.|.- +++|--.++..|.+.|||+.. .+.+..|+.|+.....
T Consensus 27 Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~ 88 (117)
T 4esf_A 27 GYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELEL 88 (117)
T ss_dssp HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHH
Confidence 35688888776642 567888899999999999753 1346799999975443
No 87
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=26.28 E-value=19 Score=38.77 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEc--CceeecccchhhhhhhhhcccccccChhhhHHHHHHhhhHh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVK--SRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVS 911 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k--~k~L~PT~lG~~vi~~L~~~f~~l~~p~~TA~~E~~Ld~Ia 911 (1157)
.|..+|-+.| |+ .++|-..++++|.+.|||.+. .+.+.+|++|+.+...... ...|++..++++
T Consensus 167 ~s~~eLA~~l---gl-sksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~l~~~~~~----------~~~w~~aq~~~~ 232 (244)
T 2wte_A 167 TGITELAKML---DK-SEKTLINKIAELKKFGILTQKGKDRKVELNELGLNVIKLNKS----------VIESSKSSEELV 232 (244)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHHHHTC-----------------------
T ss_pred CCHHHHHHHH---Cc-CHHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHHHHHHHhc----------ccccHHHHHHHH
Confidence 3445554444 55 467888999999999999885 3579999999987765432 345666666655
Q ss_pred h
Q 001106 912 A 912 (1157)
Q Consensus 912 ~ 912 (1157)
+
T Consensus 233 ~ 233 (244)
T 2wte_A 233 K 233 (244)
T ss_dssp -
T ss_pred h
Confidence 4
No 88
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=26.14 E-value=20 Score=37.66 Aligned_cols=72 Identities=10% Similarity=-0.008 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcC-ceeecccchhhhhhhhhcccccccChhhhHHHHHHhhhHhh
Q 001106 834 YSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKS-RILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSA 912 (1157)
Q Consensus 834 yTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~-k~L~PT~lG~~vi~~L~~~f~~l~~p~~TA~~E~~Ld~Ia~ 912 (1157)
.+..+|-+.| |+ +++|-..+|++|.++|||.+.. +.+.+|+.|+.+...+.. .-..||..|..+.
T Consensus 21 ~~~~~lA~~l---~v-s~~tvs~~l~~Le~~GlV~r~~~~~i~LT~~G~~~~~~~~~---------~h~~~e~~l~~~l- 86 (214)
T 3hrs_A 21 ITNKEIAQLM---QV-SPPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSDLYR---------KHRLIEVFLVHHL- 86 (214)
T ss_dssp CCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHH---------HHHHHHHHHHHTT-
T ss_pred cCHHHHHHHH---CC-ChhHHHHHHHHHHHCCCEEEecCCCeEECHHHHHHHHHHHH---------HHHHHHHHHHHHh-
Confidence 4555666555 54 4678899999999999999865 679999999987765542 1347777774322
Q ss_pred cCccHHHH
Q 001106 913 GLTEWKGL 920 (1157)
Q Consensus 913 G~~~~~~~ 920 (1157)
..+|+++
T Consensus 87 -g~~~~e~ 93 (214)
T 3hrs_A 87 -GYTTEEI 93 (214)
T ss_dssp -CCCHHHH
T ss_pred -CCCHHHH
Confidence 2455554
No 89
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=23.98 E-value=79 Score=35.26 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=19.5
Q ss_pred CCCCCCCCCceEEEE-----ecccCceeEEecCCCCCCccc
Q 001106 963 DRSCPVCGEGTLIFK-----VSRFGAGYFIGCNQHPRCNYI 998 (1157)
Q Consensus 963 ~g~CPkCGkg~lv~K-----~gr~G~~~F~GCsnyP~Ck~t 998 (1157)
...||+||....... ..--+...||-|.+ |.+.
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~---Cg~~ 305 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEA---CGNR 305 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCC---CCCc
Confidence 458999997654321 12123346888865 7653
No 90
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=23.39 E-value=20 Score=33.08 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=31.7
Q ss_pred CCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 850 RPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 850 TpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
+++|-..+++.|.+.|||++.. ..+..|+.|+.+...+.
T Consensus 52 s~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~ 97 (107)
T 2fsw_A 52 SEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPIID 97 (107)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHHHHH
Confidence 6789999999999999998742 25899999988766554
No 91
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=22.84 E-value=36 Score=44.13 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=45.3
Q ss_pred eEEeeeEEeeecccCCCCCCCHHHHHHHHH-hcCCCCCCchHHHHHhccccceEE
Q 001106 815 PLYLGEVELKQHHTQPPARYSEGSLVKKLE-ELGIGRPSTYASTLKVLQDRNYVT 868 (1157)
Q Consensus 815 ~v~~~~~~i~e~~TkPP~ryTEasLI~~ME-k~GIGTpATrA~IIe~L~~R~YV~ 868 (1157)
.+.|.++.-++++..||++||-.+|.+.+- +.|++..-|. .|.+.|++.|||.
T Consensus 755 ~~~V~~v~~k~~~~~pp~pf~~~~Lq~~a~~~~g~s~~~tm-~iaQ~LYe~g~iT 808 (1054)
T 1gku_B 755 DLTIKLVEEREELRTPLPPYTTETMLSDANRILKFSVKQTM-QIAQELFENGLIT 808 (1054)
T ss_dssp EEEEEEEEEEEEEECCCCCBCHHHHHHHHHHTSCCCHHHHH-HHHHHHHHTTSBB
T ss_pred EEEEEEEEeeEEEecCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHHHHHhcCcee
Confidence 567888999999999999999999999985 4688766665 5789999999996
No 92
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=22.81 E-value=18 Score=41.92 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=32.5
Q ss_pred CCCchHHHHHhccccceEEEc-----Cc--eeecccchhhhhhhhhc
Q 001106 850 RPSTYASTLKVLQDRNYVTVK-----SR--ILYPEFRGRMVSAFLSH 889 (1157)
Q Consensus 850 TpATrA~IIe~L~~R~YV~~k-----~k--~L~PT~lG~~vi~~L~~ 889 (1157)
.++|-..+|++|.++|||++. +| .|.+|+.|+.+++.+..
T Consensus 433 ~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~~~~~ 479 (487)
T 1hsj_A 433 KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLIS 479 (487)
T ss_dssp CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHHHHHH
Confidence 378899999999999999863 22 69999999988776653
No 93
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=22.66 E-value=54 Score=31.02 Aligned_cols=51 Identities=14% Similarity=0.050 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCC--CCCCchHHHHHhccccceEEEc---------Cceeecccchhhhhhhh
Q 001106 837 GSLVKKLEELGI--GRPSTYASTLKVLQDRNYVTVK---------SRILYPEFRGRMVSAFL 887 (1157)
Q Consensus 837 asLI~~MEk~GI--GTpATrA~IIe~L~~R~YV~~k---------~k~L~PT~lG~~vi~~L 887 (1157)
-+|.+.|++.|. =.++|--.++..|.+.|||+.. .+.+..|+.|+.....+
T Consensus 26 yei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~ 87 (115)
T 4esb_A 26 YELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEEF 87 (115)
T ss_dssp HHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHHH
Confidence 467788877553 2578888999999999999752 12467999999755433
No 94
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=22.26 E-value=53 Score=27.93 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=24.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhcccCCCCCceEEEE
Q 001106 622 DAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLIT 657 (1157)
Q Consensus 622 ~AskklG~Sa~~Tm~iAQ~LYE~~k~~~~~~~GlIT 657 (1157)
.++++||.+.++++++..+|=++ |||.
T Consensus 30 ~~a~kygV~kdeV~~~LrrLe~K---------GLI~ 56 (59)
T 2xvc_A 30 HFSKVYGVEKQEVVKLLEALKNK---------GLIA 56 (59)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHT---------TSEE
T ss_pred HHHHHhCCCHHHHHHHHHHHHHC---------CCee
Confidence 56788999999999999999996 8885
No 95
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=22.23 E-value=47 Score=32.81 Aligned_cols=50 Identities=14% Similarity=0.069 Sum_probs=37.1
Q ss_pred CHHHHHHHHHhc-----CCCCCCchHHHHHhccccceEEEc---------Cceeecccchhhhhh
Q 001106 835 SEGSLVKKLEEL-----GIGRPSTYASTLKVLQDRNYVTVK---------SRILYPEFRGRMVSA 885 (1157)
Q Consensus 835 TEasLI~~MEk~-----GIGTpATrA~IIe~L~~R~YV~~k---------~k~L~PT~lG~~vi~ 885 (1157)
+-.+|.+.|++. +| +++|--.++..|.+.|||+.. .+.+.+|+.|+.+..
T Consensus 56 ~gyeI~~~l~~~~~~~~~i-s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~ 119 (145)
T 1xma_A 56 YGYEISKNIRIKTDELYVI-KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYK 119 (145)
T ss_dssp EHHHHHHHHHHHHTTSCCC-CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCccCc-ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHH
Confidence 445678888754 33 578889999999999999753 135789999997544
No 96
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=22.22 E-value=79 Score=35.35 Aligned_cols=34 Identities=18% Similarity=0.561 Sum_probs=19.7
Q ss_pred CCCCCCCCCCceEE--EEe-cccCceeEEecCCCCCCccc
Q 001106 962 KDRSCPVCGEGTLI--FKV-SRFGAGYFIGCNQHPRCNYI 998 (1157)
Q Consensus 962 ~~g~CPkCGkg~lv--~K~-gr~G~~~F~GCsnyP~Ck~t 998 (1157)
..+.||.||...+. ++. |..+...++-|+- |.+.
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~---C~t~ 217 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSL---CACE 217 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETT---TCCE
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCC---CCCE
Confidence 35799999986543 232 3223335888974 6654
No 97
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=22.06 E-value=22 Score=37.41 Aligned_cols=45 Identities=22% Similarity=0.205 Sum_probs=37.6
Q ss_pred HhcCCCCCCchHHHHHhccccceEEEc----Cceeecccchhhhhhhhhc
Q 001106 844 EELGIGRPSTYASTLKVLQDRNYVTVK----SRILYPEFRGRMVSAFLSH 889 (1157)
Q Consensus 844 Ek~GIGTpATrA~IIe~L~~R~YV~~k----~k~L~PT~lG~~vi~~L~~ 889 (1157)
+..|| +++|-..+|+.|-+.+|+.+. ++.+.+|+.|+.++..+..
T Consensus 35 ~~L~i-sq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~~~~ 83 (230)
T 3cta_A 35 DMLGI-SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTEFA 83 (230)
T ss_dssp HHHTS-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred HHHCC-CHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHHHHHH
Confidence 34466 678899999999999999998 8899999999988776543
No 98
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=22.00 E-value=46 Score=35.83 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=34.1
Q ss_pred CCCCCCchHHHHHhccccceEEEc-----C--ceeecccchhhhhhhhhc
Q 001106 847 GIGRPSTYASTLKVLQDRNYVTVK-----S--RILYPEFRGRMVSAFLSH 889 (1157)
Q Consensus 847 GIGTpATrA~IIe~L~~R~YV~~k-----~--k~L~PT~lG~~vi~~L~~ 889 (1157)
++- ++|-..+|++|.+.|||.+. . ..+.+|+.|+.+++.+..
T Consensus 61 ~~~-~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~~~ 109 (250)
T 1p4x_A 61 CYK-QSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERVT 109 (250)
T ss_dssp SSC-GGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHHH
T ss_pred CCC-HhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHHHHH
Confidence 454 89999999999999999873 2 268999999987776653
No 99
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=21.79 E-value=96 Score=31.88 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=9.5
Q ss_pred CCCCCCCCCceEE
Q 001106 963 DRSCPVCGEGTLI 975 (1157)
Q Consensus 963 ~g~CPkCGkg~lv 975 (1157)
...||+||+...+
T Consensus 137 ~~~Cp~C~~~~a~ 149 (178)
T 3po3_S 137 RFTCGKCKEKKVS 149 (178)
T ss_dssp SSCCSSSCCSCEE
T ss_pred CcCCCCCCCCceE
Confidence 4689999975443
No 100
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=21.64 E-value=46 Score=32.18 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=31.8
Q ss_pred CCCchHHHHHhccccceEEEcC-------ceeecccchhhhhhhhh
Q 001106 850 RPSTYASTLKVLQDRNYVTVKS-------RILYPEFRGRMVSAFLS 888 (1157)
Q Consensus 850 TpATrA~IIe~L~~R~YV~~k~-------k~L~PT~lG~~vi~~L~ 888 (1157)
+++|-..++..|.+.|||++.. ..+.+|+.|+.+...+.
T Consensus 62 s~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~ 107 (131)
T 1yyv_A 62 SEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDXVA 107 (131)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHHHHH
Confidence 6788999999999999998742 25889999998776554
No 101
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=21.26 E-value=93 Score=32.43 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=41.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcccCCCCCceEEEEEEccCCcCCCHHHHHHHHHHHH
Q 001106 620 QQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIF 679 (1157)
Q Consensus 620 Q~~AskklG~Sa~~Tm~iAQ~LYE~~k~~~~~~~GlITYPRTDS~~Ls~~~~~~i~~~i~ 679 (1157)
|.+.++++|+|+.-+-.+.++|-+. |||+|-+--.-+|++...+.+..++.
T Consensus 23 ~~~lA~~l~vs~~tvs~~l~~Le~~---------GlV~r~~~~~i~LT~~G~~~~~~~~~ 73 (214)
T 3hrs_A 23 NKEIAQLMQVSPPAVTEMMKKLLAE---------ELLIKDKKAGYLLTDLGLKLVSDLYR 73 (214)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHT---------TSEEEETTTEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChhHHHHHHHHHHHC---------CCEEEecCCCeEECHHHHHHHHHHHH
Confidence 4577888999999999999999995 99999886667889887665555443
No 102
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=21.13 E-value=1.3e+02 Score=27.79 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhccCCeEEEccCCCccccHHHHHHHHHHhhcccccCCccEEEEEEcccCHHHHHHHHHhcccccHhHHHH
Q 001106 407 WTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQA 486 (1157)
Q Consensus 407 k~~lk~Lk~l~k~ad~IIlATDpDREGE~Ia~~Ile~l~~~~~~~~~k~vkRl~fsslT~~aI~~A~~nlr~~d~~L~~A 486 (1157)
.+.++.|++ .++..||+|.|++.. +-.++..+|.. .+.|+..+ .|..++=.|+--..-.-..+.++
T Consensus 25 ~~v~kai~~--gka~lViiA~D~~~~---~~~~i~~~c~~-----~~vp~~~~----~s~~eLG~A~Gk~~~~~~ai~D~ 90 (101)
T 3v7q_A 25 DLVIKEIRN--ARAKLVLLTEDASSN---TAKKVTDKCNY-----YKVPYKKV----ESRAVLGRSIGKEARVVVAVTDQ 90 (101)
T ss_dssp HHHHHHHHT--TCCSEEEEETTSCHH---HHHHHHHHHHH-----TTCCEEEE----SCHHHHHHHTTSSCCSEEEECCH
T ss_pred hhhHHHHhc--CceeEEEEecccccc---chhhhcccccc-----cCCCeeee----chHHHHHhhhCccceEEEEEecc
Confidence 344455543 468899999999965 45666666543 34566543 68999999986431112445566
Q ss_pred HHHHHHHhH
Q 001106 487 YLARRALDY 495 (1157)
Q Consensus 487 ~~AR~~lD~ 495 (1157)
++|+.+.+.
T Consensus 91 g~a~~i~~~ 99 (101)
T 3v7q_A 91 GFANKLISL 99 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766654
No 103
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=20.32 E-value=62 Score=30.01 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=35.2
Q ss_pred HHHHHHHHh-cCCCCCCchHHHHHhccccceEEEc-----C---ceeecccchhhhhhhh
Q 001106 837 GSLVKKLEE-LGIGRPSTYASTLKVLQDRNYVTVK-----S---RILYPEFRGRMVSAFL 887 (1157)
Q Consensus 837 asLI~~MEk-~GIGTpATrA~IIe~L~~R~YV~~k-----~---k~L~PT~lG~~vi~~L 887 (1157)
..|++.+++ .+| .++|-..++..|.+.|||+.. + +.+..|+.|+.+...+
T Consensus 26 yel~~~l~~~~~i-~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~ 84 (108)
T 3l7w_A 26 YDISQTIKLIASI-KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYL 84 (108)
T ss_dssp HHHHHHHTTTCCC-CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHH
Confidence 356666654 244 578889999999999999753 2 2366999999765443
Done!