BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001107
(1156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 831 ENDYKCSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDW 870
+N+ +C+VC GGEL+ CD CP +FH C+ L ++P G W
Sbjct: 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTW 47
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
Terminal Loop Replaced By Corresponding Loop From Wstf
Length = 61
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Query: 836 CSVCHFGGELLLCDRCPSSFHRNCV--GLEDVPDGDW 870
C VC GGELL CD CPSS+H +C+ L +VPDG+W
Sbjct: 12 CRVCKDGGELLCCDTCPSSYHIHCLRPALYEVPDGEW 48
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 825 GNLLQGENDYK--CSVCHFGGELLLCDRCPSSFHRNCV--GLEDVPDGDW 870
G L E D++ C VC GGE++LCD CP ++H C+ +E P+G W
Sbjct: 1 GPLGSYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKW 50
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 831 ENDYKCSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDW 870
+N+ +C+VC GGEL+ CD CP +FH C+ L ++P G W
Sbjct: 3 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTW 44
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 836 CSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDWF 871
C VC GGELL CD CPSS+H +C+ L ++P+G+W
Sbjct: 12 CRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWL 49
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 28/127 (22%)
Query: 836 CSVCHFGGELLLCDRCPSSFHRNC--VGLEDVPDGDWFXXXXXXXXXXXXXXREEVEDVV 893
C+VC GGELL C++CP FH +C L + P G+W + EVE
Sbjct: 7 CAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWI------CTFCRDLSKPEVE--- 57
Query: 894 DGSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCEEIFLGL-----QRLLGKP 948
+ C+ H N K + K T +KCE + L L P
Sbjct: 58 -------YDCDAPSH-----NSEKKKTEGLVKLTPIDKRKCERLLLFLYCHEMSLAFQDP 105
Query: 949 IPIGVPN 955
+P+ VP+
Sbjct: 106 VPLTVPD 112
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 836 CSVCHFGGELLLCDRCPSSFHRNC--VGLEDVPDGDWF 871
C+VC GG+LL C++CP FH C L P GDW
Sbjct: 10 CAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWI 47
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 835 KCSVCHFGGE---LLLCDRCPSSFHRNCV--GLEDVPDGDW 870
+C VC GE L+LCD C +FH C+ L +VPDG+W
Sbjct: 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEW 42
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 836 CSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDWF 871
CSVC G+LL+CD C +H +C+ L+ +P G W
Sbjct: 8 CSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWI 45
>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GND|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GNE|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-7
pdb|4GNF|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-15
pdb|4GNG|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
pdb|4GNG|D Chain D, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
Length = 107
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 822 RLKGNLLQGENDYKCSVCHFGGELLLCDR--CPSSFHRNCVGLEDVPDGDW 870
++K Q DY C C GGEL++CD+ CP ++H C+ L P G W
Sbjct: 5 KIKTEPKQMHEDY-CFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKW 54
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 37.0 bits (84), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 830 GENDYKCSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDWF 871
G D+ CSVC G+LL+CD C +H +C+ L+ +P G W
Sbjct: 7 GHEDF-CSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWI 49
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 36.6 bits (83), Expect = 0.094, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 831 ENDYKCSVCHFGGE-----LLLCDRCPSSFHRNCVGLEDVPDGDWF 871
+ D CS+C G +L CD C + H+ C G+ +P+G W
Sbjct: 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWL 59
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 36.2 bits (82), Expect = 0.100, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 831 ENDYKCSVCHFGGE-----LLLCDRCPSSFHRNCVGLEDVPDGDWF 871
+ D CS+C G +L CD C + H+ C G+ +P+G W
Sbjct: 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWL 68
>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
Finger-Bromodomain
Length = 189
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 836 CSVCHFGGELLLCDRCPSSFHRNC--VGLEDVPDGDW 870
C VC G+L++C++C FH +C L+DVP +W
Sbjct: 5 CRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEW 41
>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
Corepressor
Length = 88
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 836 CSVCHFGGELLLCDRCPSSFHRNC--VGLEDVPDGDW 870
C VC G+L++C++C FH +C L+DVP +W
Sbjct: 28 CRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEW 64
>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Protein 3 (Ing3)
Length = 70
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 843 GELLLCDR--CPSS-FHRNCVGLEDVPDGDWF 871
GE++ CD CP FH CVGL + P G W+
Sbjct: 17 GEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWY 48
>pdb|1IML|A Chain A, Cysteine Rich Intestinal Protein, Nmr, 48 Structures
Length = 76
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 759 RDGIKCKCCGKVYTLSGFEDHAGSTYCN 786
R +KC+ CGK T G +H G YCN
Sbjct: 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCN 52
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
With Amp
pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
Length = 581
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 210 KKLKDWTSSVRALWNELIWEVIYDNIK------IVVDSF---LVAAGIPQSSEQEVQPIL 260
K+LKD TS+V+++ + L+ E+I N K ++D F L +P S ++++P L
Sbjct: 19 KQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFLIDRFDKELFKKNVPIVSYEDIKPYL 78
Query: 261 E 261
+
Sbjct: 79 D 79
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 223 WNELIWEVIYDNIKIVVDSFLVAAGIPQSSEQEVQPILEFYRSATNVT---EDP---PIE 276
++EL+ + + I++ DS++V +G+P+ Q + +F TNV +DP P+
Sbjct: 44 FDELVDQHGLEKIEVSGDSYMVVSGVPRPRPDHTQALADFALDMTNVAAQLKDPRGNPVP 103
Query: 277 SADSLAVVPV 286
LA PV
Sbjct: 104 LRVGLATGPV 113
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
pdb|4EQ4|B Chain B, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
Length = 581
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 210 KKLKDWTSSVRALWNELIWEVIYDNIK------IVVDSF---LVAAGIPQSSEQEVQPIL 260
K+LKD TS+V+++ + L+ E+I N K ++D F L +P S ++++P L
Sbjct: 19 KQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFLIDRFDKELFKKNVPIVSYEDIKPYL 78
Query: 261 E 261
+
Sbjct: 79 D 79
>pdb|2JMI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Yeast
Yng1 Protein In Free State
pdb|2JMJ|A Chain A, Nmr Solution Structure Of The Phd Domain From The Yeast
Yng1 Protein In Complex With H3(1-9)k4me3 Peptide
Length = 90
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 843 GELLLCDR--CPSS-FHRNCVGLEDVPDGDWF 871
G ++ CD CP FH CVGL+ P G W+
Sbjct: 37 GPMVACDNPACPFEWFHYGCVGLKQAPKGKWY 68
>pdb|2LRI|C Chain C, Nmr Structure Of The Second Phd Finger Of Aire (aire-phd2)
Length = 66
Score = 30.0 bits (66), Expect = 8.8, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 835 KCSVCHFGGELLLCDRCPSSFHRNC 859
+C VC G ++L C C ++FH C
Sbjct: 14 RCGVCGDGTDVLRCTHCAAAFHWRC 38
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 832 NDYKCSVCHFGGE---LLLCDRCPSSFHRNCV--GLEDVPDGDW 870
+ Y C VC G E LL CD C ++H C+ L ++P G W
Sbjct: 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIW 58
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 202 DLREKKGYKKLKDWTSSVRALWNELIWEVIYDNIKIVVDSFLVAAGIPQSSEQ 254
D + + + + ++ R + N+ +WEV DN ++V FL++A P S+ +
Sbjct: 98 DAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASR 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,389,385
Number of Sequences: 62578
Number of extensions: 1508437
Number of successful extensions: 3640
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3604
Number of HSP's gapped (non-prelim): 51
length of query: 1156
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1047
effective length of database: 8,152,335
effective search space: 8535494745
effective search space used: 8535494745
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)