Query 001107
Match_columns 1156
No_of_seqs 489 out of 2046
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 16:01:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05641 Agenet: Agenet domain 99.6 2.5E-16 5.5E-21 140.4 6.0 65 22-104 1-67 (68)
2 PRK10314 putative acyltransfer 99.4 2.6E-12 5.6E-17 131.2 11.0 97 1025-1122 48-147 (153)
3 COG2153 ElaA Predicted acyltra 99.1 7.7E-11 1.7E-15 118.4 7.7 99 1026-1125 50-152 (155)
4 smart00743 Agenet Tudor-like d 99.0 4.7E-10 1E-14 97.7 6.8 55 110-165 2-60 (61)
5 PF13508 Acetyltransf_7: Acety 99.0 2.5E-09 5.4E-14 96.4 10.9 77 1025-1106 3-79 (79)
6 KOG1512 PHD Zn-finger protein 99.0 1.2E-10 2.5E-15 126.6 1.4 89 834-936 259-362 (381)
7 KOG1244 Predicted transcriptio 98.9 2.3E-10 5.1E-15 123.7 2.1 91 834-937 225-331 (336)
8 PF00583 Acetyltransf_1: Acety 98.9 5.6E-09 1.2E-13 93.3 9.9 74 1031-1105 2-83 (83)
9 PF13673 Acetyltransf_10: Acet 98.9 7E-09 1.5E-13 98.5 9.4 74 1025-1104 44-117 (117)
10 COG1246 ArgA N-acetylglutamate 98.9 4.6E-09 9.9E-14 107.3 8.0 82 1029-1112 44-126 (153)
11 PRK10146 aminoalkylphosphonic 98.8 2.7E-08 5.8E-13 98.1 9.1 84 1027-1111 49-140 (144)
12 PTZ00330 acetyltransferase; Pr 98.8 2.9E-08 6.2E-13 98.2 9.4 84 1026-1110 53-142 (147)
13 KOG0956 PHD finger protein AF1 98.7 5.7E-09 1.2E-13 123.8 3.4 106 835-944 7-187 (900)
14 cd02169 Citrate_lyase_ligase C 98.7 3.8E-08 8.1E-13 111.3 9.3 77 1026-1108 6-83 (297)
15 PF13527 Acetyltransf_9: Acety 98.7 1.4E-07 3E-12 91.3 11.6 112 981-1107 9-127 (127)
16 TIGR01575 rimI ribosomal-prote 98.7 1.8E-07 3.9E-12 89.6 11.2 82 1026-1109 32-116 (131)
17 PLN02706 glucosamine 6-phospha 98.7 1.3E-07 2.8E-12 94.5 10.6 82 1026-1108 54-143 (150)
18 PRK03624 putative acetyltransf 98.6 1E-07 2.2E-12 92.2 8.8 83 1025-1109 45-130 (140)
19 PRK07757 acetyltransferase; Pr 98.6 1.4E-07 3E-12 94.5 10.0 83 1028-1113 44-126 (152)
20 PRK07922 N-acetylglutamate syn 98.6 1.4E-07 3E-12 98.0 10.0 80 1028-1110 48-128 (169)
21 TIGR02382 wecD_rffC TDP-D-fuco 98.6 3.3E-07 7.2E-12 96.4 12.3 79 1029-1108 103-184 (191)
22 PLN02825 amino-acid N-acetyltr 98.5 2.3E-07 5.1E-12 111.6 10.5 84 1027-1112 409-493 (515)
23 PRK09491 rimI ribosomal-protei 98.5 4.7E-07 1E-11 90.2 10.8 84 1024-1109 39-125 (146)
24 PRK10975 TDP-fucosamine acetyl 98.5 3.9E-07 8.4E-12 95.9 10.3 84 1025-1109 102-188 (194)
25 TIGR00124 cit_ly_ligase [citra 98.5 2.9E-07 6.3E-12 105.6 10.1 82 1023-1110 29-110 (332)
26 TIGR01890 N-Ac-Glu-synth amino 98.5 4.2E-07 9.1E-12 107.5 10.5 84 1028-1113 325-409 (429)
27 smart00743 Agenet Tudor-like d 98.5 5E-07 1.1E-11 78.8 7.3 58 20-103 1-59 (61)
28 PHA00673 acetyltransferase dom 98.4 1.4E-06 2.9E-11 90.1 11.6 86 1026-1112 56-149 (154)
29 PRK13688 hypothetical protein; 98.4 7E-07 1.5E-11 92.3 9.3 79 1026-1110 46-134 (156)
30 PRK12308 bifunctional arginino 98.4 6.1E-07 1.3E-11 110.7 10.4 82 1028-1112 506-587 (614)
31 PRK05279 N-acetylglutamate syn 98.4 8E-07 1.7E-11 105.4 10.8 84 1028-1113 337-421 (441)
32 TIGR03827 GNAT_ablB putative b 98.4 1E-06 2.2E-11 97.8 9.6 84 1025-1109 158-245 (266)
33 KOG4443 Putative transcription 98.3 1.6E-07 3.5E-12 112.2 1.9 89 832-932 17-114 (694)
34 PRK10140 putative acetyltransf 98.3 2.4E-06 5.3E-11 85.5 9.9 84 1025-1110 51-142 (162)
35 PRK09831 putative acyltransfer 98.3 1.4E-06 3.1E-11 87.5 8.1 74 1027-1111 55-128 (147)
36 KOG3396 Glucosamine-phosphate 98.3 2.4E-06 5.2E-11 85.7 8.2 83 1025-1108 53-143 (150)
37 TIGR03448 mycothiol_MshD mycot 98.3 5.5E-06 1.2E-10 92.0 11.6 82 1025-1109 46-128 (292)
38 COG5141 PHD zinc finger-contai 98.2 3.3E-07 7.1E-12 106.0 1.6 89 828-916 188-337 (669)
39 KOG3139 N-acetyltransferase [G 98.2 7.8E-06 1.7E-10 84.3 10.1 84 1026-1110 57-147 (165)
40 TIGR02406 ectoine_EctA L-2,4-d 98.1 9.4E-06 2E-10 83.2 9.6 82 1026-1108 40-127 (157)
41 TIGR03448 mycothiol_MshD mycot 98.1 1.1E-05 2.4E-10 89.6 9.6 75 1033-1108 208-287 (292)
42 PF13420 Acetyltransf_4: Acety 98.1 2.3E-05 5E-10 78.4 10.9 82 1026-1109 51-139 (155)
43 PHA01807 hypothetical protein 98.1 8.7E-06 1.9E-10 84.1 7.9 83 1025-1110 53-142 (153)
44 TIGR03103 trio_acet_GNAT GNAT- 98.1 1.4E-05 3E-10 97.6 10.8 84 1024-1108 122-216 (547)
45 COG0456 RimI Acetyltransferase 98.1 1.7E-05 3.7E-10 80.8 9.4 74 1035-1109 72-154 (177)
46 KOG1244 Predicted transcriptio 98.0 9.8E-07 2.1E-11 96.2 0.1 104 734-876 220-329 (336)
47 PRK10514 putative acetyltransf 98.0 1.8E-05 3.8E-10 78.5 8.8 87 1029-1123 54-141 (145)
48 KOG4299 PHD Zn-finger protein 98.0 3.5E-06 7.6E-11 101.0 3.8 44 833-876 47-93 (613)
49 KOG4299 PHD Zn-finger protein 98.0 1.8E-06 3.9E-11 103.4 0.9 46 833-878 253-305 (613)
50 PF08445 FR47: FR47-like prote 98.0 2.9E-05 6.3E-10 72.5 8.7 75 1033-1109 6-82 (86)
51 TIGR01211 ELP3 histone acetylt 98.0 2.1E-05 4.6E-10 95.3 9.8 84 1026-1110 412-517 (522)
52 KOG4443 Putative transcription 98.0 9.9E-07 2.2E-11 105.7 -1.7 104 835-944 70-216 (694)
53 PF13523 Acetyltransf_8: Acety 98.0 3.7E-05 8.1E-10 77.2 9.7 88 1023-1111 46-143 (152)
54 cd04301 NAT_SF N-Acyltransfera 98.0 4.5E-05 9.8E-10 62.4 8.5 61 1028-1088 2-64 (65)
55 PRK01346 hypothetical protein; 97.9 3.2E-05 6.9E-10 90.7 10.4 80 1027-1109 49-136 (411)
56 PRK10562 putative acetyltransf 97.9 3E-05 6.5E-10 77.5 8.4 81 1026-1113 49-129 (145)
57 PRK15130 spermidine N1-acetylt 97.9 5.4E-05 1.2E-09 78.7 10.0 82 1026-1109 58-145 (186)
58 KOG0825 PHD Zn-finger protein 97.9 3.4E-06 7.4E-11 101.9 1.0 117 730-876 142-264 (1134)
59 KOG1512 PHD Zn-finger protein 97.9 3.7E-06 8E-11 92.2 1.1 76 758-873 276-357 (381)
60 KOG4323 Polycomb-like PHD Zn-f 97.9 7.1E-06 1.5E-10 96.6 3.5 107 834-947 84-234 (464)
61 TIGR03585 PseH pseudaminic aci 97.9 8.7E-05 1.9E-09 74.2 10.4 81 1027-1110 53-139 (156)
62 TIGR01686 FkbH FkbH-like domai 97.8 7.3E-05 1.6E-09 85.4 10.5 81 1025-1107 231-319 (320)
63 KOG0955 PHD finger protein BR1 97.8 9.2E-06 2E-10 103.6 3.4 48 829-876 215-267 (1051)
64 COG3393 Predicted acetyltransf 97.8 4.5E-05 9.8E-10 84.3 8.3 82 1027-1109 179-262 (268)
65 KOG0954 PHD finger protein [Ge 97.8 7.3E-06 1.6E-10 99.0 1.9 109 829-938 267-440 (893)
66 KOG3397 Acetyltransferases [Ge 97.7 5.1E-05 1.1E-09 78.9 6.4 80 1032-1113 64-145 (225)
67 KOG0383 Predicted helicase [Ge 97.6 2.9E-05 6.3E-10 95.9 3.6 69 850-934 1-91 (696)
68 PRK10809 ribosomal-protein-S5- 97.6 0.00027 5.9E-09 74.0 9.3 81 1026-1108 78-165 (194)
69 PF00628 PHD: PHD-finger; Int 97.6 2.4E-05 5.1E-10 65.8 0.9 42 835-876 1-49 (51)
70 COG3153 Predicted acetyltransf 97.6 0.00045 9.8E-09 72.8 10.5 132 985-1136 17-153 (171)
71 PRK10151 ribosomal-protein-L7/ 97.5 0.00063 1.4E-08 70.3 10.5 81 1028-1110 70-156 (179)
72 PF13302 Acetyltransf_3: Acety 97.4 0.00081 1.8E-08 65.8 9.9 80 1024-1105 55-142 (142)
73 smart00249 PHD PHD zinc finger 97.4 0.00011 2.4E-09 59.2 3.1 41 835-875 1-47 (47)
74 KOG1473 Nucleosome remodeling 97.4 5.3E-05 1.2E-09 95.0 1.3 103 831-936 342-478 (1414)
75 KOG1973 Chromatin remodeling p 97.4 5.9E-05 1.3E-09 84.8 1.5 44 833-876 219-266 (274)
76 KOG3216 Diamine acetyltransfer 97.4 0.0021 4.5E-08 66.3 12.2 135 975-1127 13-156 (163)
77 PF13718 GNAT_acetyltr_2: GNAT 97.4 0.00093 2E-08 71.9 10.0 85 1023-1108 25-175 (196)
78 KOG0383 Predicted helicase [Ge 97.2 0.00011 2.3E-09 91.1 0.9 50 829-878 43-94 (696)
79 KOG0825 PHD Zn-finger protein 97.2 0.00012 2.5E-09 89.2 1.1 49 875-936 216-265 (1134)
80 PF00628 PHD: PHD-finger; Int 97.2 0.00016 3.6E-09 60.7 1.4 48 877-935 2-49 (51)
81 COG5034 TNG2 Chromatin remodel 97.0 0.0003 6.4E-09 77.1 1.6 44 832-876 220-268 (271)
82 COG1247 Sortase and related ac 97.0 0.0053 1.2E-07 64.7 10.6 109 1023-1136 50-167 (169)
83 smart00249 PHD PHD zinc finger 96.9 0.00074 1.6E-08 54.4 3.3 45 877-932 2-46 (47)
84 smart00333 TUDOR Tudor domain. 96.6 0.0055 1.2E-07 52.4 6.3 54 21-103 2-56 (57)
85 PF15446 zf-PHD-like: PHD/FYVE 96.6 0.0013 2.8E-08 68.6 2.7 82 835-916 1-143 (175)
86 KOG1973 Chromatin remodeling p 96.6 0.001 2.2E-08 75.0 2.0 36 895-936 230-268 (274)
87 PF12746 GNAT_acetyltran: GNAT 96.4 0.017 3.6E-07 65.1 10.6 77 1029-1107 169-245 (265)
88 COG1444 Predicted P-loop ATPas 96.3 0.0084 1.8E-07 75.3 8.1 57 1050-1108 532-590 (758)
89 KOG4144 Arylalkylamine N-acety 96.1 0.0036 7.8E-08 64.5 3.0 60 1049-1109 101-161 (190)
90 PF14542 Acetyltransf_CG: GCN5 96.0 0.029 6.3E-07 51.9 8.2 58 1028-1086 2-59 (78)
91 KOG3138 Predicted N-acetyltran 96.0 0.0053 1.2E-07 65.7 3.8 60 1049-1109 89-152 (187)
92 COG0454 WecD Histone acetyltra 96.0 0.0075 1.6E-07 52.4 4.1 44 1055-1104 87-130 (156)
93 PF08444 Gly_acyl_tr_C: Aralky 95.9 0.013 2.7E-07 55.9 5.1 75 1029-1108 3-79 (89)
94 cd04718 BAH_plant_2 BAH, or Br 95.8 0.006 1.3E-07 62.9 2.6 31 854-884 1-33 (148)
95 COG1670 RimL Acetyltransferase 95.7 0.057 1.2E-06 54.6 9.5 87 1023-1111 64-160 (187)
96 smart00333 TUDOR Tudor domain. 95.6 0.029 6.4E-07 47.9 6.1 51 110-161 2-53 (57)
97 KOG2488 Acetyltransferase (GNA 95.6 0.04 8.7E-07 58.9 8.2 82 1026-1108 94-181 (202)
98 KOG0957 PHD finger protein [Ge 95.5 0.0065 1.4E-07 71.6 1.9 43 834-876 120-177 (707)
99 COG3053 CitC Citrate lyase syn 95.4 0.049 1.1E-06 61.5 8.4 80 1026-1111 37-117 (352)
100 PF15057 DUF4537: Domain of un 95.4 0.11 2.5E-06 52.2 10.2 92 25-148 1-100 (124)
101 KOG0957 PHD finger protein [Ge 95.2 0.0068 1.5E-07 71.5 0.9 58 876-946 546-609 (707)
102 COG5034 TNG2 Chromatin remodel 95.2 0.0091 2E-07 65.8 1.7 35 895-936 232-269 (271)
103 PF12568 DUF3749: Acetyltransf 95.1 0.13 2.9E-06 52.1 9.5 78 1028-1109 41-125 (128)
104 KOG1245 Chromatin remodeling c 95.1 0.0053 1.1E-07 81.9 -0.5 46 831-876 1106-1156(1404)
105 COG2388 Predicted acetyltransf 94.9 0.067 1.5E-06 52.0 6.6 62 1023-1086 15-76 (99)
106 PF05641 Agenet: Agenet domain 94.8 0.059 1.3E-06 48.6 5.7 53 111-164 1-66 (68)
107 PF13831 PHD_2: PHD-finger; PD 94.7 0.0049 1.1E-07 49.2 -1.4 34 843-876 2-36 (36)
108 TIGR03694 exosort_acyl putativ 94.5 0.18 3.9E-06 56.1 9.8 93 1016-1109 47-200 (241)
109 KOG3234 Acetyltransferase, (GN 94.3 0.054 1.2E-06 56.4 4.6 58 1049-1107 69-129 (173)
110 PF11717 Tudor-knot: RNA bindi 94.1 0.12 2.6E-06 44.8 5.7 48 22-78 1-52 (55)
111 COG4552 Eis Predicted acetyltr 94.1 0.091 2E-06 60.8 6.3 83 1020-1109 36-127 (389)
112 KOG3235 Subunit of the major N 94.1 0.15 3.2E-06 53.3 7.1 80 1029-1108 45-134 (193)
113 cd04718 BAH_plant_2 BAH, or Br 93.5 0.034 7.4E-07 57.4 1.5 26 906-936 1-26 (148)
114 COG1243 ELP3 Histone acetyltra 93.5 0.067 1.4E-06 63.7 3.9 51 1058-1109 459-509 (515)
115 KOG4323 Polycomb-like PHD Zn-f 93.4 0.026 5.6E-07 67.4 0.6 42 835-876 170-222 (464)
116 PF09465 LBR_tudor: Lamin-B re 93.1 0.5 1.1E-05 41.4 7.8 50 109-159 4-55 (55)
117 PF12148 DUF3590: Protein of u 93.1 0.16 3.6E-06 48.0 5.1 62 37-122 8-77 (85)
118 PF13480 Acetyltransf_6: Acety 92.6 0.86 1.9E-05 44.4 9.9 82 1003-1091 55-136 (142)
119 cd04508 TUDOR Tudor domains ar 92.1 0.39 8.5E-06 39.6 5.8 42 25-76 1-43 (48)
120 cd04508 TUDOR Tudor domains ar 92.1 0.33 7.1E-06 40.1 5.3 46 114-160 1-48 (48)
121 KOG1245 Chromatin remodeling c 90.7 0.067 1.5E-06 71.9 -0.3 50 877-939 1111-1160(1404)
122 PF06852 DUF1248: Protein of u 90.4 1.1 2.5E-05 48.0 8.6 83 1026-1109 48-137 (181)
123 PRK13834 putative autoinducer 90.2 2 4.4E-05 46.9 10.4 95 1014-1109 42-167 (207)
124 PF07039 DUF1325: SGF29 tudor- 88.6 6.4 0.00014 40.2 12.0 106 23-150 1-114 (130)
125 smart00258 SAND SAND domain. 88.0 0.28 6.2E-06 45.3 1.7 45 759-803 20-67 (73)
126 PF00855 PWWP: PWWP domain; I 87.8 1.2 2.7E-05 41.0 5.9 53 111-163 1-60 (86)
127 KOG0955 PHD finger protein BR1 87.8 0.3 6.5E-06 63.8 2.3 47 877-936 222-268 (1051)
128 COG3981 Predicted acetyltransf 86.9 1.1 2.4E-05 47.7 5.5 66 1026-1093 71-141 (174)
129 PF00765 Autoind_synth: Autoin 86.4 4.5 9.8E-05 43.4 9.9 91 1014-1106 34-152 (182)
130 smart00561 MBT Present in Dros 85.6 4.5 9.8E-05 39.2 8.6 52 18-76 24-75 (96)
131 cd05835 Dnmt3b_related The PWW 85.3 1 2.2E-05 42.7 3.9 56 111-166 1-63 (87)
132 KOG1246 DNA-binding protein ju 85.2 0.53 1.2E-05 61.6 2.7 119 832-979 154-278 (904)
133 COG5141 PHD zinc finger-contai 85.1 0.43 9.3E-06 57.0 1.6 32 895-932 208-239 (669)
134 KOG0954 PHD finger protein [Ge 84.4 0.48 1E-05 59.0 1.7 48 877-937 274-321 (893)
135 PF06003 SMN: Survival motor n 84.1 2.2 4.8E-05 48.4 6.7 57 108-164 66-124 (264)
136 KOG3038 Histone acetyltransfer 83.6 12 0.00025 42.3 11.6 108 20-146 126-237 (264)
137 KOG0956 PHD finger protein AF1 82.8 0.68 1.5E-05 57.3 2.0 39 891-936 16-56 (900)
138 PF13831 PHD_2: PHD-finger; PD 82.4 0.41 9E-06 38.4 0.0 32 895-932 2-34 (36)
139 cd06080 MUM1_like Mutated mela 82.1 2.4 5.2E-05 39.9 5.0 51 111-161 1-53 (80)
140 cd05162 PWWP The PWWP domain, 82.1 2.5 5.3E-05 39.6 5.1 55 111-165 1-65 (87)
141 KOG1701 Focal adhesion adaptor 81.0 0.51 1.1E-05 55.8 0.1 75 835-915 336-431 (468)
142 cd05834 HDGF_related The PWWP 78.7 3.4 7.4E-05 39.0 4.8 56 110-165 2-61 (83)
143 PF01342 SAND: SAND domain; I 78.6 0.52 1.1E-05 44.4 -0.7 43 759-803 34-76 (82)
144 PF07227 DUF1423: Protein of u 78.5 1.2 2.6E-05 53.3 2.1 41 869-914 123-163 (446)
145 smart00293 PWWP domain with co 78.2 4.1 8.8E-05 36.2 4.9 50 111-160 1-61 (63)
146 PF13832 zf-HC5HC2H_2: PHD-zin 78.0 1.6 3.4E-05 42.5 2.5 69 835-916 2-89 (110)
147 KOG1081 Transcription factor N 77.2 1.7 3.8E-05 52.9 3.0 46 829-875 85-130 (463)
148 PF13444 Acetyltransf_5: Acety 76.9 4.8 0.0001 38.8 5.4 55 1016-1071 22-100 (101)
149 COG3818 Predicted acetyltransf 76.3 5.6 0.00012 40.8 5.8 71 1046-1116 81-155 (167)
150 KOG4135 Predicted phosphogluco 76.0 5.2 0.00011 41.9 5.5 58 1049-1107 107-168 (185)
151 cd05836 N_Pac_NP60 The PWWP do 75.4 4.6 0.0001 38.3 4.7 55 111-165 1-63 (86)
152 KOG2535 RNA polymerase II elon 75.0 3.2 7E-05 48.2 4.2 51 1059-1110 497-548 (554)
153 cd04264 DUF619-NAGS DUF619 dom 74.8 5.3 0.00012 39.0 5.1 47 1031-1077 14-62 (99)
154 PF09465 LBR_tudor: Lamin-B re 73.2 11 0.00023 33.4 5.9 40 18-60 2-43 (55)
155 COG5628 Predicted acetyltransf 72.7 16 0.00034 37.2 7.7 87 1028-1116 40-131 (143)
156 PF14446 Prok-RING_1: Prokaryo 69.7 3.1 6.8E-05 36.5 1.9 37 874-917 5-41 (54)
157 PF02474 NodA: Nodulation prot 67.0 8.1 0.00017 41.4 4.7 53 1049-1103 85-137 (196)
158 PF01429 MBD: Methyl-CpG bindi 65.6 7.6 0.00016 36.0 3.8 39 555-593 11-53 (77)
159 PF11717 Tudor-knot: RNA bindi 65.0 18 0.00039 31.4 5.8 39 111-149 1-42 (55)
160 TIGR03019 pepcterm_femAB FemAB 64.6 20 0.00043 41.4 7.8 80 1028-1108 198-280 (330)
161 PF00567 TUDOR: Tudor domain; 63.4 17 0.00036 34.5 5.9 50 18-77 48-98 (121)
162 PF01233 NMT: Myristoyl-CoA:pr 63.2 27 0.0006 37.1 7.7 68 1020-1087 72-148 (162)
163 PLN00104 MYST -like histone ac 62.4 9.4 0.0002 46.3 4.7 53 18-78 50-110 (450)
164 PF15446 zf-PHD-like: PHD/FYVE 61.6 5.4 0.00012 42.4 2.2 36 877-917 2-37 (175)
165 cd04265 DUF619-NAGS-U DUF619 d 61.4 13 0.00028 36.5 4.6 48 1031-1078 15-63 (99)
166 KOG0804 Cytoplasmic Zn-finger 61.3 3.5 7.7E-05 49.4 0.9 66 832-915 174-255 (493)
167 PF13901 DUF4206: Domain of un 60.6 5.7 0.00012 43.3 2.4 23 892-914 167-189 (202)
168 PF01853 MOZ_SAS: MOZ/SAS fami 60.6 33 0.00071 37.4 7.9 84 980-1082 26-113 (188)
169 PF14446 Prok-RING_1: Prokaryo 59.0 5 0.00011 35.3 1.2 28 834-861 6-37 (54)
170 cd05841 BS69_related The PWWP 57.9 17 0.00038 34.6 4.7 53 111-165 7-61 (83)
171 cd05840 SPBC215_ISWI_like The 56.8 18 0.00038 35.0 4.7 76 111-188 1-89 (93)
172 PF13880 Acetyltransf_13: ESCO 56.7 8.4 0.00018 35.6 2.3 27 1051-1077 7-33 (70)
173 cd01396 MeCP2_MBD MeCP2, MBD1, 55.7 12 0.00027 34.9 3.3 39 555-593 7-48 (77)
174 PF00567 TUDOR: Tudor domain; 55.4 17 0.00036 34.5 4.3 49 113-162 56-104 (121)
175 PLN03238 probable histone acet 54.7 25 0.00054 40.5 6.1 83 981-1082 102-188 (290)
176 PF01429 MBD: Methyl-CpG bindi 51.8 22 0.00048 33.0 4.3 43 434-476 11-57 (77)
177 PF06003 SMN: Survival motor n 50.5 43 0.00094 38.2 7.2 51 17-77 64-116 (264)
178 PF10497 zf-4CXXC_R1: Zinc-fin 49.1 7.7 0.00017 38.3 0.9 36 849-884 34-80 (105)
179 PF13771 zf-HC5HC2H: PHD-like 48.5 10 0.00022 35.4 1.6 32 876-917 38-71 (90)
180 cd00122 MBD MeCP2, MBD1, MBD2, 47.9 29 0.00062 30.9 4.2 41 556-596 7-50 (62)
181 KOG1473 Nucleosome remodeling 45.2 13 0.00028 49.2 2.2 36 895-935 354-389 (1414)
182 PF04377 ATE_C: Arginine-tRNA- 45.0 1E+02 0.0022 31.6 8.2 64 1024-1088 38-101 (128)
183 KOG0644 Uncharacterized conser 44.4 28 0.00061 44.9 4.8 38 109-146 977-1028(1113)
184 KOG1829 Uncharacterized conser 43.2 11 0.00023 47.3 1.0 54 872-940 504-562 (580)
185 cd01396 MeCP2_MBD MeCP2, MBD1, 42.9 35 0.00075 32.0 4.1 41 435-475 8-51 (77)
186 PTZ00064 histone acetyltransfe 41.5 42 0.0009 41.4 5.5 83 981-1082 331-417 (552)
187 PLN03239 histone acetyltransfe 40.4 55 0.0012 38.8 6.1 83 981-1082 160-246 (351)
188 smart00391 MBD Methyl-CpG bind 40.3 30 0.00065 32.4 3.3 38 556-593 9-50 (77)
189 PF11793 FANCL_C: FANCL C-term 40.3 12 0.00026 34.2 0.7 28 834-861 3-38 (70)
190 PF13901 DUF4206: Domain of un 40.3 20 0.00044 39.1 2.5 37 833-876 152-196 (202)
191 PLN00104 MYST -like histone ac 40.1 31 0.00067 42.1 4.2 81 981-1080 253-337 (450)
192 PF02820 MBT: mbt repeat; Int 40.1 77 0.0017 29.0 5.9 44 27-77 2-45 (73)
193 KOG2036 Predicted P-loop ATPas 38.3 26 0.00057 44.6 3.3 31 1049-1079 614-644 (1011)
194 cd00122 MBD MeCP2, MBD1, MBD2, 38.0 45 0.00098 29.7 4.0 41 435-475 7-50 (62)
195 KOG1701 Focal adhesion adaptor 37.6 4 8.6E-05 48.7 -3.5 70 834-914 275-363 (468)
196 KOG2752 Uncharacterized conser 37.4 25 0.00054 40.8 2.7 23 894-916 145-168 (345)
197 PF12861 zf-Apc11: Anaphase-pr 37.2 13 0.00029 35.5 0.5 28 848-876 49-78 (85)
198 PRK14852 hypothetical protein; 36.6 92 0.002 41.7 7.9 82 1028-1109 78-181 (989)
199 smart00561 MBT Present in Dros 36.1 1.1E+02 0.0024 29.7 6.6 40 109-150 26-68 (96)
200 KOG2747 Histone acetyltransfer 35.8 34 0.00074 41.0 3.6 72 980-1073 208-284 (396)
201 COG0143 MetG Methionyl-tRNA sy 35.8 18 0.0004 45.2 1.5 18 898-915 156-173 (558)
202 COG2139 RPL21A Ribosomal prote 35.4 59 0.0013 31.9 4.5 55 108-162 30-95 (98)
203 PRK04306 50S ribosomal protein 35.4 65 0.0014 31.8 4.8 55 108-162 32-97 (98)
204 cd05838 WHSC1_related The PWWP 35.2 53 0.0011 31.8 4.2 54 112-165 2-66 (95)
205 cd05837 MSH6_like The PWWP dom 34.9 56 0.0012 32.4 4.5 54 110-163 2-69 (110)
206 PF15057 DUF4537: Domain of un 34.3 64 0.0014 32.8 4.8 40 19-60 53-98 (124)
207 PF07897 DUF1675: Protein of u 34.2 14 0.0003 42.6 0.1 30 762-791 253-283 (284)
208 PRK00756 acyltransferase NodA; 34.0 49 0.0011 35.5 4.0 62 1026-1088 55-123 (196)
209 PF07653 SH3_2: Variant SH3 do 33.8 36 0.00079 29.1 2.6 21 110-130 17-40 (55)
210 PF13832 zf-HC5HC2H_2: PHD-zin 33.8 19 0.00041 35.0 1.0 29 833-861 55-86 (110)
211 PRK01305 arginyl-tRNA-protein 32.9 2.3E+02 0.005 32.1 9.3 61 1027-1088 146-206 (240)
212 PLN02400 cellulose synthase 32.8 41 0.00089 45.0 4.0 46 830-876 33-85 (1085)
213 PF00641 zf-RanBP: Zn-finger i 31.6 23 0.00049 27.0 0.9 10 867-876 2-11 (30)
214 KOG0269 WD40 repeat-containing 31.0 22 0.00047 45.5 1.0 40 867-915 766-811 (839)
215 PF13639 zf-RING_2: Ring finge 30.9 7.4 0.00016 31.8 -2.0 38 834-876 1-44 (44)
216 PRK10430 DNA-binding transcrip 30.4 48 0.001 36.1 3.5 44 426-470 192-239 (239)
217 PF12148 DUF3590: Protein of u 30.2 1E+02 0.0022 29.7 5.1 50 117-166 2-65 (85)
218 KOG0162 Myosin class I heavy c 29.6 45 0.00098 42.6 3.4 22 109-130 1068-1091(1106)
219 KOG4348 Adaptor protein CMS/SE 29.6 25 0.00054 42.3 1.2 25 108-132 116-142 (627)
220 PF09953 DUF2187: Uncharacteri 29.6 1.4E+02 0.003 26.9 5.4 29 111-144 4-32 (57)
221 smart00547 ZnF_RBZ Zinc finger 29.0 35 0.00076 24.9 1.5 9 868-876 1-9 (26)
222 PRK03564 formate dehydrogenase 27.9 76 0.0017 37.2 4.7 26 831-856 185-223 (309)
223 KOG2779 N-myristoyl transferas 27.8 2.2E+02 0.0048 34.1 8.2 84 1019-1102 128-226 (421)
224 COG5027 SAS2 Histone acetyltra 26.2 37 0.00079 40.1 1.7 74 980-1072 208-285 (395)
225 KOG3612 PHD Zn-finger protein 26.1 50 0.0011 41.0 2.9 46 831-876 58-106 (588)
226 PF11793 FANCL_C: FANCL C-term 25.4 37 0.00079 31.1 1.3 34 877-915 5-40 (70)
227 PRK14559 putative protein seri 25.3 50 0.0011 42.3 2.8 42 835-876 3-48 (645)
228 PF13771 zf-HC5HC2H: PHD-like 24.7 38 0.00083 31.6 1.3 28 834-861 37-67 (90)
229 PLN02638 cellulose synthase A 24.6 61 0.0013 43.5 3.4 46 830-876 14-66 (1079)
230 PLN02436 cellulose synthase A 23.6 72 0.0016 42.8 3.8 46 830-876 33-85 (1094)
231 PF13913 zf-C2HC_2: zinc-finge 23.1 26 0.00055 26.0 -0.2 20 761-780 2-21 (25)
232 KOG1999 RNA polymerase II tran 23.1 2.8E+02 0.0061 37.0 8.6 103 19-162 405-510 (1024)
233 TIGR03827 GNAT_ablB putative b 22.6 1.1E+02 0.0024 34.4 4.6 42 1066-1108 22-63 (266)
234 cd01397 HAT_MBD Methyl-CpG bin 21.7 1.1E+02 0.0024 28.7 3.6 42 435-476 7-51 (73)
235 KOG4628 Predicted E3 ubiquitin 21.3 60 0.0013 38.6 2.2 44 834-878 230-276 (348)
236 smart00326 SH3 Src homology 3 21.3 1.2E+02 0.0026 24.6 3.5 24 109-132 19-44 (58)
237 KOG1734 Predicted RING-contain 20.7 37 0.00081 38.7 0.4 33 829-861 220-262 (328)
238 COG3916 LasI N-acyl-L-homoseri 20.7 5.5E+02 0.012 28.7 9.2 83 1023-1106 51-160 (209)
239 PF07649 C1_3: C1-like domain; 20.5 49 0.0011 25.3 0.9 28 877-912 3-30 (30)
No 1
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=99.63 E-value=2.5e-16 Score=140.45 Aligned_cols=65 Identities=43% Similarity=0.752 Sum_probs=42.7
Q ss_pred CCCCCEEEEEeCCCCccceEEEEEEEEecCC-CceEEeCCcccCCCCCC-ceEEEEccccccCCccccccccCCCCcccC
Q 001107 22 LPVGERVEVRSDEDGFLGSWHAGTVIASSSD-CRTVKYDHLLTDAGDDN-LVDIVCVSSIINSSTFADVTQSHSRGHIRP 99 (1156)
Q Consensus 22 fkvGd~VEV~s~eeG~~GsWF~AtVi~~~~~-~~~V~Y~dl~dddg~~~-L~E~V~~s~~~~g~~~~~~~r~~~r~~IRP 99 (1156)
|++|++|||+++++||+||||+|+|++..++ .++|+|+++.++++.++ |.|+|+. .+|||
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~~~~V~Y~~~~~~~~~~~~l~e~V~~------------------~~iRP 62 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGDDKYLVEYDDLPDEDGESPPLKEWVDA------------------RRIRP 62 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT-EEEEEETT-SS--------EEEEEG------------------GGEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCCcEEEEEECCcccccccccccEEEech------------------heEEC
Confidence 7999999999999999999999999999998 55599999999887766 9999997 45999
Q ss_pred CCCCC
Q 001107 100 LPPPV 104 (1156)
Q Consensus 100 ~PP~~ 104 (1156)
.||+.
T Consensus 63 ~pP~~ 67 (68)
T PF05641_consen 63 CPPPE 67 (68)
T ss_dssp -----
T ss_pred cCcCC
Confidence 99974
No 2
>PRK10314 putative acyltransferase; Provisional
Probab=99.37 E-value=2.6e-12 Score=131.17 Aligned_cols=97 Identities=19% Similarity=0.092 Sum_probs=85.7
Q ss_pred cEEEEEEeCCEEEEEEEEEEecC--ceEEEeEeeeecCccCCChhHHHHHHHHHHHHHc-CCcEEEecCchhhHHHhhcc
Q 001107 1025 FYTVLLERNEELVTVATVRIFGE--KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMEL-GVEKLILPAIPTVLKTWTTS 1101 (1156)
Q Consensus 1025 fy~~VL~~~~e~Vs~Arlri~g~--~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~l-gV~~LvL~A~~~A~~fw~~k 1101 (1156)
=+|++++.++++||+|+++..+. ..++|.+|||+++|||+|+|++||+++++.++.. +...+.|.|+..|++||+ +
T Consensus 48 ~~h~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~-k 126 (153)
T PRK10314 48 NRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQ-S 126 (153)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHH-H
Confidence 35677788999999999987543 3579999999999999999999999999988875 788999999999999999 8
Q ss_pred CCcEEcChHHHhccccceeee
Q 001107 1102 FGFKRMTASERVQLVDYTFLN 1122 (1156)
Q Consensus 1102 lGF~~~~~~~~~~~~~~~~m~ 1122 (1156)
|||..+++.+.+..+.|..|.
T Consensus 127 ~GF~~~g~~f~~~Gi~h~~M~ 147 (153)
T PRK10314 127 FGFIPVTEVYEEDGIPHIGMA 147 (153)
T ss_pred CCCEECCCccccCCCCcHhhh
Confidence 999999999888888887665
No 3
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.14 E-value=7.7e-11 Score=118.38 Aligned_cols=99 Identities=20% Similarity=0.066 Sum_probs=84.9
Q ss_pred EEEEEEe-CCEEEEEEEEEEecCceEE--EeEeeeecCccCCChhHHHHHHHHHHHHHcC-CcEEEecCchhhHHHhhcc
Q 001107 1026 YTVLLER-NEELVTVATVRIFGEKAAE--IPLVGTRFQYRRLGMCRILMNELEKRLMELG-VEKLILPAIPTVLKTWTTS 1101 (1156)
Q Consensus 1026 y~~VL~~-~~e~Vs~Arlri~g~~~AE--Ip~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lg-V~~LvL~A~~~A~~fw~~k 1101 (1156)
.|+.+.. +|++||+|||-..+....+ |.||+|.+++||+|+|+.||....+.+.... =+.++|.||.++++||. +
T Consensus 50 ~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa-~ 128 (155)
T COG2153 50 RHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYA-S 128 (155)
T ss_pred ceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHH-H
Confidence 4666666 9999999999887765555 9999999999999999999976655555544 67799999999999999 8
Q ss_pred CCcEEcChHHHhccccceeeeeCC
Q 001107 1102 FGFKRMTASERVQLVDYTFLNFPD 1125 (1156)
Q Consensus 1102 lGF~~~~~~~~~~~~~~~~m~F~g 1125 (1156)
|||.+.+++.++..|.|.-|.++.
T Consensus 129 ~GFv~~~e~yledGIpHv~M~r~~ 152 (155)
T COG2153 129 FGFVRVGEEYLEDGIPHVGMIREV 152 (155)
T ss_pred hCcEEcCchhhcCCCCchhhhhcc
Confidence 999999999999999998887764
No 4
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=99.03 E-value=4.7e-10 Score=97.68 Aligned_cols=55 Identities=22% Similarity=0.398 Sum_probs=51.6
Q ss_pred CCCCCCEEEEEe--CCCeEEEEEEEecCCCceEEEEeCC--CCCeEEEecCCcccccccc
Q 001107 110 SLPFGLCVDVYY--NEAWWEGVIFDLEDGSAERRIFFPD--LGDEMTVGIDSLRITQDWD 165 (1156)
Q Consensus 110 ~~~vGd~VDa~~--~dgWWeGvV~~v~~g~~~~~V~Fpg--egde~~~~~~dLRp~~dW~ 165 (1156)
.|++|+.|||++ +++||+|+|+++.++ ++|.|+|++ ++...+++.++|||+++|.
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~~-~~~~V~~~~~~~~~~e~v~~~~LRp~~~w~ 60 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVLGD-GKYLVRYLTESEPLKETVDWSDLRPHPPWV 60 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEECCC-CEEEEEECCCCcccEEEEeHHHcccCCCCC
Confidence 588999999999 999999999999874 479999999 9999999999999999997
No 5
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.01 E-value=2.5e-09 Score=96.41 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=67.5
Q ss_pred cEEEEEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCc
Q 001107 1025 FYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGF 1104 (1156)
Q Consensus 1025 fy~~VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF 1104 (1156)
-++++++.++++||++.+... .+.+.|..+||+|+|||||+|+.||+.+.+.+ +-..+.+.+.+.++.||+ ++||
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~-~~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~---~~~~i~l~~~~~~~~fY~-~~GF 77 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPN-EDFAYIGYLAVDPEYRGKGIGSKLLNYLLEKA---KSKKIFLFTNPAAIKFYE-KLGF 77 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEET-TTEEEEEEEEE-GGGTTSSHHHHHHHHHHHHH---TCSEEEEEEEHHHHHHHH-HTTE
T ss_pred cEEEEEEECCEEEEEEEEEEc-CCEEEEEEEEECHHHcCCCHHHHHHHHHHHHc---CCCcEEEEEcHHHHHHHH-HCcC
Confidence 467888999999999999655 45899999999999999999999999998887 446788888999999999 8999
Q ss_pred EE
Q 001107 1105 KR 1106 (1156)
Q Consensus 1105 ~~ 1106 (1156)
++
T Consensus 78 ~~ 79 (79)
T PF13508_consen 78 EE 79 (79)
T ss_dssp EE
T ss_pred CC
Confidence 85
No 6
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.98 E-value=1.2e-10 Score=126.55 Aligned_cols=89 Identities=25% Similarity=0.603 Sum_probs=74.2
Q ss_pred ccccccCCCC---------ceeecCCCCCccccCCCCC-----CCCCCCCCccCCCC-cccCCCCCCCCccccccCCcee
Q 001107 834 YKCSVCHFGG---------ELLLCDRCPSSFHRNCVGL-----EDVPDGDWFCPSCC-CSICGNSNSREEVEDVVDGSVL 898 (1156)
Q Consensus 834 d~C~vC~dgG---------eLl~CD~Cp~afH~~CL~l-----~~vP~g~W~Cp~C~-C~iCg~~~~~~~~~~~~~g~ll 898 (1156)
..|.+|-++- .+|+|..|..++|++|+.+ ..+....|.|..|+ |.+|+++..+ ..++
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E--------~E~~ 330 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIE--------SEHL 330 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccc--------hhee
Confidence 4588887653 3999999999999999983 24566789999998 9999999754 4499
Q ss_pred ecccccccccccccccCCcchhccCCCCCcccCccchh
Q 001107 899 ICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCEE 936 (1156)
Q Consensus 899 ~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfC~~~C~~ 936 (1156)
+||.|++.||..|.. |..+|.|.|.|--.|-.
T Consensus 331 FCD~CDRG~HT~CVG------L~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 331 FCDVCDRGPHTLCVG------LQDLPRGEWICDMRCRE 362 (381)
T ss_pred ccccccCCCCccccc------cccccCccchhhhHHHH
Confidence 999999999999987 77899999999765543
No 7
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.95 E-value=2.3e-10 Score=123.70 Aligned_cols=91 Identities=33% Similarity=0.774 Sum_probs=76.5
Q ss_pred ccccccCCC----------CceeecCCCCCccccCCCC-----CCCCCCCCCccCCCC-cccCCCCCCCCccccccCCce
Q 001107 834 YKCSVCHFG----------GELLLCDRCPSSFHRNCVG-----LEDVPDGDWFCPSCC-CSICGNSNSREEVEDVVDGSV 897 (1156)
Q Consensus 834 d~C~vC~dg----------GeLl~CD~Cp~afH~~CL~-----l~~vP~g~W~Cp~C~-C~iCg~~~~~~~~~~~~~g~l 897 (1156)
.+|-.|..+ .+|+-|..|.++-|++||. +..|....|.|.+|+ |.+||-+..+ ..+
T Consensus 225 ~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsend--------dql 296 (336)
T KOG1244|consen 225 PYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSEND--------DQL 296 (336)
T ss_pred cccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCC--------cee
Confidence 467777643 3599999999999999998 346777899999998 8999977643 569
Q ss_pred eecccccccccccccccCCcchhccCCCCCcccCccchhh
Q 001107 898 LICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCEEI 937 (1156)
Q Consensus 898 l~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfC~~~C~~i 937 (1156)
++||.|++.||+.||.++ |.+.|++.|-|-- |-+.
T Consensus 297 lfcddcdrgyhmyclspp----m~eppegswsc~K-OG~~ 331 (336)
T KOG1244|consen 297 LFCDDCDRGYHMYCLSPP----MVEPPEGSWSCHL-CLEE 331 (336)
T ss_pred EeecccCCceeeEecCCC----cCCCCCCchhHHH-HHHH
Confidence 999999999999999998 8889999999974 6543
No 8
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.93 E-value=5.6e-09 Score=93.34 Aligned_cols=74 Identities=23% Similarity=0.376 Sum_probs=67.7
Q ss_pred EeCCEEEEEEEEEEecC-----ceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchh---hHHHhhccC
Q 001107 1031 ERNEELVTVATVRIFGE-----KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPT---VLKTWTTSF 1102 (1156)
Q Consensus 1031 ~~~~e~Vs~Arlri~g~-----~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~---A~~fw~~kl 1102 (1156)
+.+|++||++.+++... ..+.|..++|+++|||+|+|+.||+.+++.+++.|+..|.+....+ +..||+ ++
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~-k~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYE-KL 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHH-HT
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHH-Hc
Confidence 67899999999999865 5899999999999999999999999999999999999998877654 669999 89
Q ss_pred CcE
Q 001107 1103 GFK 1105 (1156)
Q Consensus 1103 GF~ 1105 (1156)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 9
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.88 E-value=7e-09 Score=98.46 Aligned_cols=74 Identities=24% Similarity=0.364 Sum_probs=65.5
Q ss_pred cEEEEEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCc
Q 001107 1025 FYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGF 1104 (1156)
Q Consensus 1025 fy~~VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF 1104 (1156)
...+|++.+|++||.+.++ .-++|..+.|+|+|||+|+|++||+++++.++. |++.|++.+...|.+||+ ++||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~-~~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYR-KLGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHH-HTT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHH-hCCC
Confidence 5778889999999999986 345599999999999999999999999999988 999999999999999999 8998
No 10
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=98.87 E-value=4.6e-09 Score=107.32 Aligned_cols=82 Identities=22% Similarity=0.388 Sum_probs=73.7
Q ss_pred EEEeCCEEEEEEEEE-EecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCcEEc
Q 001107 1029 LLERNEELVTVATVR-IFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRM 1107 (1156)
Q Consensus 1029 VL~~~~e~Vs~Arlr-i~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~~~ 1107 (1156)
|++++|.+||||.+. +.+.+++||.-|||+|+|||+|.|..|++.++..|+++|++++++-+. .+..|+. ++||+.+
T Consensus 44 i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt-~~~~~F~-~~GF~~v 121 (153)
T COG1246 44 IIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT-RSPEFFA-ERGFTRV 121 (153)
T ss_pred eeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec-ccHHHHH-HcCCeEC
Confidence 447899999999999 688999999999999999999999999999999999999999999985 4566666 8999999
Q ss_pred ChHHH
Q 001107 1108 TASER 1112 (1156)
Q Consensus 1108 ~~~~~ 1112 (1156)
+.+.+
T Consensus 122 d~~~L 126 (153)
T COG1246 122 DKDEL 126 (153)
T ss_pred ccccC
Confidence 86543
No 11
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.76 E-value=2.7e-08 Score=98.06 Aligned_cols=84 Identities=17% Similarity=0.059 Sum_probs=71.2
Q ss_pred EEEEEeCCEEEEEEEEEEec-----CceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCc---hhhHHHh
Q 001107 1027 TVLLERNEELVTVATVRIFG-----EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAI---PTVLKTW 1098 (1156)
Q Consensus 1027 ~~VL~~~~e~Vs~Arlri~g-----~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~---~~A~~fw 1098 (1156)
.+|.+.++++||++.++... ...++|..++|.++|||+|+|+.||+.+++.++..|++.+.|.+. ..|+.||
T Consensus 49 ~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY 128 (144)
T PRK10146 49 YHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFY 128 (144)
T ss_pred EEEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHH
Confidence 35667889999999987632 225689999999999999999999999999999999999988765 4799999
Q ss_pred hccCCcEEcChHH
Q 001107 1099 TTSFGFKRMTASE 1111 (1156)
Q Consensus 1099 ~~klGF~~~~~~~ 1111 (1156)
+ ++||...+..+
T Consensus 129 ~-~~Gf~~~~~~~ 140 (144)
T PRK10146 129 L-REGYEQSHFRF 140 (144)
T ss_pred H-HcCCchhhhhh
Confidence 9 89998865544
No 12
>PTZ00330 acetyltransferase; Provisional
Probab=98.76 E-value=2.9e-08 Score=98.18 Aligned_cols=84 Identities=20% Similarity=0.287 Sum_probs=72.3
Q ss_pred EEEEEEeCCEEEEEEEEEEe------cCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhh
Q 001107 1026 YTVLLERNEELVTVATVRIF------GEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWT 1099 (1156)
Q Consensus 1026 y~~VL~~~~e~Vs~Arlri~------g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~ 1099 (1156)
+.++...+|++||.+.+... +...++|..+.|.++|||+|+|+.||..+++.++..|+.++++.+...|..||+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 34455578899999988653 123578899999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEcChH
Q 001107 1100 TSFGFKRMTAS 1110 (1156)
Q Consensus 1100 ~klGF~~~~~~ 1110 (1156)
++||......
T Consensus 133 -k~GF~~~~~~ 142 (147)
T PTZ00330 133 -KLGFRACERQ 142 (147)
T ss_pred -HCCCEEeceE
Confidence 9999987643
No 13
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=98.72 E-value=5.7e-09 Score=123.82 Aligned_cols=106 Identities=29% Similarity=0.771 Sum_probs=80.3
Q ss_pred cccccCCC-Cc----eeecCC--CCCccccCCCCCCCCCCCCCccCCCC-------------------------------
Q 001107 835 KCSVCHFG-GE----LLLCDR--CPSSFHRNCVGLEDVPDGDWFCPSCC------------------------------- 876 (1156)
Q Consensus 835 ~C~vC~dg-Ge----Ll~CD~--Cp~afH~~CL~l~~vP~g~W~Cp~C~------------------------------- 876 (1156)
-|.||.|. |. |+.||+ |--+.|+.|+++.+||.|.|||..|.
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHV 86 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHV 86 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEE
Confidence 49999984 32 999998 99999999999999999999999995
Q ss_pred ---------------------------------cccCCCCCCCCccccccCCceeeccc--ccccccccccccCCcchhc
Q 001107 877 ---------------------------------CSICGNSNSREEVEDVVDGSVLICHQ--CELKYHRKCLQNGATDKLK 921 (1156)
Q Consensus 877 ---------------------------------C~iCg~~~~~~~~~~~~~g~ll~Cdq--Cer~YH~~CL~~~~~~~L~ 921 (1156)
|+||.+-.... .+.-|..+.|+. |.++||+.|.+..+...-+
T Consensus 87 VCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~Grpn---kA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE 163 (900)
T KOG0956|consen 87 VCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPN---KAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEE 163 (900)
T ss_pred EEEeeccceeecccccccceeeccCchhhhcceeeeecccCCcc---ccccccceecccccchhhhhhhHhhhhccceec
Confidence 56665443211 233577899996 9999999999987642111
Q ss_pred --cCCCCCcccCccchhhHhhhhhh
Q 001107 922 --THAKETWFCSKKCEEIFLGLQRL 944 (1156)
Q Consensus 922 --e~p~~~WfC~~~C~~i~~~L~~l 944 (1156)
.+-...-||. .|+..|.+|.+-
T Consensus 164 ~gn~~dNVKYCG-YCk~HfsKlkk~ 187 (900)
T KOG0956|consen 164 EGNISDNVKYCG-YCKYHFSKLKKS 187 (900)
T ss_pred cccccccceech-hHHHHHHHhhcC
Confidence 1223456887 799999998865
No 14
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.70 E-value=3.8e-08 Score=111.29 Aligned_cols=77 Identities=25% Similarity=0.385 Sum_probs=68.8
Q ss_pred EEEEE-EeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCc
Q 001107 1026 YTVLL-ERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGF 1104 (1156)
Q Consensus 1026 y~~VL-~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF 1104 (1156)
|++.+ ..+|++||+|++.. .+|..|||+++|||+|+|++||+++|+.+++.|++++.|.+..++.+||+ ++||
T Consensus 6 ~~~~v~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYe-k~GF 79 (297)
T cd02169 6 YTVGIFDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFR-GLGF 79 (297)
T ss_pred EEEEEEEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHH-HCCC
Confidence 33443 46699999998852 36999999999999999999999999999999999999999999999999 9999
Q ss_pred EEcC
Q 001107 1105 KRMT 1108 (1156)
Q Consensus 1105 ~~~~ 1108 (1156)
+.++
T Consensus 80 ~~~~ 83 (297)
T cd02169 80 KELA 83 (297)
T ss_pred EEec
Confidence 9887
No 15
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.69 E-value=1.4e-07 Score=91.34 Aligned_cols=112 Identities=26% Similarity=0.267 Sum_probs=81.4
Q ss_pred hhhhHHHHHhhcccccccCCccchhHHHHHhhhcccCCCCCccccEEEEEEeCCEEEEEEEEEEe-----cC--ceEEEe
Q 001107 981 KLNIAHRVMHECFEPVHEPYSSGDLAEDVLFSRWSMLNRLNFQGFYTVLLERNEELVTVATVRIF-----GE--KAAEIP 1053 (1156)
Q Consensus 981 kLa~AL~vm~EcF~Pi~d~rtg~Dli~~~vy~~gs~~~r~df~Gfy~~VL~~~~e~Vs~Arlri~-----g~--~~AEIp 1053 (1156)
-+..-.+++.++|.+-.... ..+-+.... +..-++++.+++|++||.+.+... |. ..+.|-
T Consensus 9 d~~~i~~l~~~~F~~~~~~~------~~~~~~~~~------~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~ 76 (127)
T PF13527_consen 9 DFEQIIELFNEAFGDSESPP------EIWEYFRNL------YGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIG 76 (127)
T ss_dssp GHHHHHHHHHHHTTT-CHHH------HHHHHHHHH------HHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCCch------hhhhhhhcc------cCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEE
Confidence 35556777889997654432 112222111 112267888889999998887554 33 578899
Q ss_pred EeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCcEEc
Q 001107 1054 LVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRM 1107 (1156)
Q Consensus 1054 ~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~~~ 1107 (1156)
-|||.|+|||+|+|+.||.++++.+++.|+..++|-+ ...+||. +|||+.+
T Consensus 77 ~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~-~~G~~~~ 127 (127)
T PF13527_consen 77 DVAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYR-RFGFEYA 127 (127)
T ss_dssp EEEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHH-HTTEEEE
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhh-cCCCEEC
Confidence 9999999999999999999999999999999999887 4479999 8999863
No 16
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.65 E-value=1.8e-07 Score=89.60 Aligned_cols=82 Identities=22% Similarity=0.316 Sum_probs=69.6
Q ss_pred EEEEEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEe---cCchhhHHHhhccC
Q 001107 1026 YTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLIL---PAIPTVLKTWTTSF 1102 (1156)
Q Consensus 1026 y~~VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL---~A~~~A~~fw~~kl 1102 (1156)
+.++.+.++++||.+.++.. .....+-.++|.++|||||+|+.|++++++.+...|..++++ ++...+..||+ ++
T Consensus 32 ~~~~~~~~~~~vg~~~~~~~-~~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~-~~ 109 (131)
T TIGR01575 32 CYLLARIGGKVVGYAGVQIV-LDEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYK-KL 109 (131)
T ss_pred eEEEEecCCeEEEEEEEEec-CCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHH-Hc
Confidence 34455678999999998754 345678899999999999999999999999999999999988 45566899999 89
Q ss_pred CcEEcCh
Q 001107 1103 GFKRMTA 1109 (1156)
Q Consensus 1103 GF~~~~~ 1109 (1156)
||+..+.
T Consensus 110 Gf~~~~~ 116 (131)
T TIGR01575 110 GFNEIAI 116 (131)
T ss_pred CCCcccc
Confidence 9998764
No 17
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.65 E-value=1.3e-07 Score=94.47 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=69.5
Q ss_pred EEEEEEe--CCEEEEEEEEEEec------CceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHH
Q 001107 1026 YTVLLER--NEELVTVATVRIFG------EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKT 1097 (1156)
Q Consensus 1026 y~~VL~~--~~e~Vs~Arlri~g------~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~f 1097 (1156)
+.++.+. ++++||++.+.+.. ...+.|..++|.++|||+|+|+.||+++++.|+++|+++|.+........|
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 4444444 68999999885321 355678889999999999999999999999999999999999998888999
Q ss_pred hhccCCcEEcC
Q 001107 1098 WTTSFGFKRMT 1108 (1156)
Q Consensus 1098 w~~klGF~~~~ 1108 (1156)
|+ ++||...+
T Consensus 134 y~-k~GF~~~g 143 (150)
T PLN02706 134 YE-KCGYVRKE 143 (150)
T ss_pred HH-HCcCEEeh
Confidence 99 89999865
No 18
>PRK03624 putative acetyltransferase; Provisional
Probab=98.63 E-value=1e-07 Score=92.24 Aligned_cols=83 Identities=20% Similarity=0.253 Sum_probs=70.0
Q ss_pred cEEEEEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCc---hhhHHHhhcc
Q 001107 1025 FYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAI---PTVLKTWTTS 1101 (1156)
Q Consensus 1025 fy~~VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~---~~A~~fw~~k 1101 (1156)
.+.+++..++++||.+.+... ...+.+..++|.++|||+|+|+.|+..+++.++.+|++.+.+.+. ..++.||+ +
T Consensus 45 ~~~~v~~~~~~~vG~~~~~~~-~~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~-k 122 (140)
T PRK03624 45 SLFLVAEVGGEVVGTVMGGYD-GHRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYE-A 122 (140)
T ss_pred ceEEEEEcCCcEEEEEEeecc-CCCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHH-H
Confidence 355677788999999987643 344678899999999999999999999999999999999887765 45889999 9
Q ss_pred CCcEEcCh
Q 001107 1102 FGFKRMTA 1109 (1156)
Q Consensus 1102 lGF~~~~~ 1109 (1156)
+||...+.
T Consensus 123 ~GF~~~~~ 130 (140)
T PRK03624 123 LGYEEQDR 130 (140)
T ss_pred cCCccccE
Confidence 99998654
No 19
>PRK07757 acetyltransferase; Provisional
Probab=98.63 E-value=1.4e-07 Score=94.52 Aligned_cols=83 Identities=23% Similarity=0.348 Sum_probs=72.4
Q ss_pred EEEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCcEEc
Q 001107 1028 VLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRM 1107 (1156)
Q Consensus 1028 ~VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~~~ 1107 (1156)
+++..+|++||.+.+.+.+.+.++|-.++|.|+|||+|+|+.||.++++.+.+.|+.++.+.. .+..||+ |+||+..
T Consensus 44 ~i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~--~~~~~Y~-k~GF~~~ 120 (152)
T PRK07757 44 YVAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALT--YQPEFFE-KLGFREV 120 (152)
T ss_pred EEEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEe--CcHHHHH-HCCCEEc
Confidence 345678999999999988888899999999999999999999999999999999999986544 3578999 9999998
Q ss_pred ChHHHh
Q 001107 1108 TASERV 1113 (1156)
Q Consensus 1108 ~~~~~~ 1113 (1156)
+...+.
T Consensus 121 ~~~~~~ 126 (152)
T PRK07757 121 DKEALP 126 (152)
T ss_pred ccccCC
Confidence 765443
No 20
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.62 E-value=1.4e-07 Score=97.99 Aligned_cols=80 Identities=20% Similarity=0.307 Sum_probs=70.8
Q ss_pred EEEE-eCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCcEE
Q 001107 1028 VLLE-RNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKR 1106 (1156)
Q Consensus 1028 ~VL~-~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~~ 1106 (1156)
++++ .+|++||.+.+.+...+.++|..++|+++|||+|+|+.||+++++.+++.|++++.+... +..||+ |+||+.
T Consensus 48 ~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~-k~GF~~ 124 (169)
T PRK07922 48 WVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFA-RHGFVE 124 (169)
T ss_pred EEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHH-HCCCEE
Confidence 4556 889999999988777788999999999999999999999999999999999999987544 578999 999999
Q ss_pred cChH
Q 001107 1107 MTAS 1110 (1156)
Q Consensus 1107 ~~~~ 1110 (1156)
++..
T Consensus 125 ~~~~ 128 (169)
T PRK07922 125 IDGT 128 (169)
T ss_pred Cccc
Confidence 8643
No 21
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.60 E-value=3.3e-07 Score=96.36 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=69.7
Q ss_pred EEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecC---chhhHHHhhccCCcE
Q 001107 1029 LLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPA---IPTVLKTWTTSFGFK 1105 (1156)
Q Consensus 1029 VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A---~~~A~~fw~~klGF~ 1105 (1156)
+...+|++||.+.+.......++|..++|.++|||+|+|+.|+.++++.++++|+.+|.+.. -..|+.||+ |+||+
T Consensus 103 ~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~-klGF~ 181 (191)
T TIGR02382 103 LRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYI-RSGAN 181 (191)
T ss_pred EEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH-HcCCc
Confidence 44568899999999877666789999999999999999999999999999999999999874 356899999 99998
Q ss_pred EcC
Q 001107 1106 RMT 1108 (1156)
Q Consensus 1106 ~~~ 1108 (1156)
..+
T Consensus 182 ~~~ 184 (191)
T TIGR02382 182 IES 184 (191)
T ss_pred ccc
Confidence 754
No 22
>PLN02825 amino-acid N-acetyltransferase
Probab=98.55 E-value=2.3e-07 Score=111.61 Aligned_cols=84 Identities=25% Similarity=0.358 Sum_probs=73.9
Q ss_pred EEEEEeCCEEEEEEEEEEec-CceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCcE
Q 001107 1027 TVLLERNEELVTVATVRIFG-EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFK 1105 (1156)
Q Consensus 1027 ~~VL~~~~e~Vs~Arlri~g-~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~ 1105 (1156)
.+|++.+|++||+|.+..+. .+.+||-.+||+++|||+|+|++||+.+|+.++++|+++|++.+ ..+..||. ++||.
T Consensus 409 f~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~-k~GF~ 486 (515)
T PLN02825 409 FVVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFV-RRGFS 486 (515)
T ss_pred EEEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHH-HCCCE
Confidence 34678999999999987764 46899999999999999999999999999999999999999876 56889999 89999
Q ss_pred EcChHHH
Q 001107 1106 RMTASER 1112 (1156)
Q Consensus 1106 ~~~~~~~ 1112 (1156)
..+.+.+
T Consensus 487 ~~~~~~l 493 (515)
T PLN02825 487 ECSIESL 493 (515)
T ss_pred EeChhhC
Confidence 9775443
No 23
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.54 E-value=4.7e-07 Score=90.23 Aligned_cols=84 Identities=23% Similarity=0.380 Sum_probs=70.9
Q ss_pred ccEEEEEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEec---CchhhHHHhhc
Q 001107 1024 GFYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILP---AIPTVLKTWTT 1100 (1156)
Q Consensus 1024 Gfy~~VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~---A~~~A~~fw~~ 1100 (1156)
+|+.+++..++++||.+.++.... .+.+-.++|.++|||+|+|+.|+..+++.++..|+..+.+. +-..+..||+
T Consensus 39 ~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~- 116 (146)
T PRK09491 39 RYLNLKLTVNGQMAAFAITQVVLD-EATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYE- 116 (146)
T ss_pred CceEEEEEECCeEEEEEEEEeecC-ceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHH-
Confidence 455566778899999999876543 46688899999999999999999999999999999988874 4467899999
Q ss_pred cCCcEEcCh
Q 001107 1101 SFGFKRMTA 1109 (1156)
Q Consensus 1101 klGF~~~~~ 1109 (1156)
++||+..+.
T Consensus 117 k~Gf~~~~~ 125 (146)
T PRK09491 117 SLGFNEVTI 125 (146)
T ss_pred HcCCEEeee
Confidence 999998663
No 24
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.53 E-value=3.9e-07 Score=95.87 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=71.4
Q ss_pred cEEEEEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCc---hhhHHHhhcc
Q 001107 1025 FYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAI---PTVLKTWTTS 1101 (1156)
Q Consensus 1025 fy~~VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~---~~A~~fw~~k 1101 (1156)
++.++...+|++||.+.+...+...++|..++|.++|||||+|+.|+..+++.+++.|++++.+... ..|..||+ +
T Consensus 102 ~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~ye-k 180 (194)
T PRK10975 102 QCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYI-R 180 (194)
T ss_pred cEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHH-H
Confidence 3444444678999999998766667899999999999999999999999999999999999987644 56899999 8
Q ss_pred CCcEEcCh
Q 001107 1102 FGFKRMTA 1109 (1156)
Q Consensus 1102 lGF~~~~~ 1109 (1156)
+||...+.
T Consensus 181 ~Gf~~~~~ 188 (194)
T PRK10975 181 SGANIEST 188 (194)
T ss_pred CCCeEeEE
Confidence 99998653
No 25
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.53 E-value=2.9e-07 Score=105.64 Aligned_cols=82 Identities=24% Similarity=0.300 Sum_probs=73.8
Q ss_pred cccEEEEEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccC
Q 001107 1023 QGFYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSF 1102 (1156)
Q Consensus 1023 ~Gfy~~VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~kl 1102 (1156)
.-.|+++++.+|++||+|++. + + .|..|||+++|||+|+|+.||.++++.+++.|+..+.|-+.+.+..||+ ++
T Consensus 29 ~~d~~vv~~~~~~lVg~g~l~--g-~--~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~-kl 102 (332)
T TIGR00124 29 PLEIFIAVYEDEEIIGCGGIA--G-N--VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFE-YC 102 (332)
T ss_pred CCCEEEEEEECCEEEEEEEEe--c-C--EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHH-Hc
Confidence 335788889999999999973 3 2 4889999999999999999999999999999999999999999999999 89
Q ss_pred CcEEcChH
Q 001107 1103 GFKRMTAS 1110 (1156)
Q Consensus 1103 GF~~~~~~ 1110 (1156)
||..+...
T Consensus 103 GF~~i~~~ 110 (332)
T TIGR00124 103 GFKTLAEA 110 (332)
T ss_pred CCEEeeee
Confidence 99997754
No 26
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.49 E-value=4.2e-07 Score=107.52 Aligned_cols=84 Identities=17% Similarity=0.335 Sum_probs=73.1
Q ss_pred EEEEeCCEEEEEEEEEEec-CceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCcEE
Q 001107 1028 VLLERNEELVTVATVRIFG-EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKR 1106 (1156)
Q Consensus 1028 ~VL~~~~e~Vs~Arlri~g-~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~~ 1106 (1156)
+|++.++++||++.+..+. ...++|..++|.++|||+|+|+.||+.+|+.+++.|+++|++.+ ..+..||+ ++||+.
T Consensus 325 ~V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~-~~a~~fY~-k~GF~~ 402 (429)
T TIGR01890 325 SIIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLT-TRTGHWFR-ERGFQT 402 (429)
T ss_pred EEEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEee-cchHHHHH-HCCCEE
Confidence 3567899999999998874 46899999999999999999999999999999999999987665 35789999 899999
Q ss_pred cChHHHh
Q 001107 1107 MTASERV 1113 (1156)
Q Consensus 1107 ~~~~~~~ 1113 (1156)
++..++.
T Consensus 403 ~g~~~l~ 409 (429)
T TIGR01890 403 ASVDELP 409 (429)
T ss_pred CChhhCC
Confidence 9875443
No 27
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=98.45 E-value=5e-07 Score=78.76 Aligned_cols=58 Identities=34% Similarity=0.479 Sum_probs=48.2
Q ss_pred CCCCCCCEEEEEeCCCCccceEEEEEEEEecCCCce-EEeCCcccCCCCCCceEEEEccccccCCccccccccCCCCccc
Q 001107 20 RKLPVGERVEVRSDEDGFLGSWHAGTVIASSSDCRT-VKYDHLLTDAGDDNLVDIVCVSSIINSSTFADVTQSHSRGHIR 98 (1156)
Q Consensus 20 ~~fkvGd~VEV~s~eeG~~GsWF~AtVi~~~~~~~~-V~Y~dl~dddg~~~L~E~V~~s~~~~g~~~~~~~r~~~r~~IR 98 (1156)
+.|++|++|||+..+ .|+||+|+|+++.+..+| |.|.+ ++....|.|+.+ .||
T Consensus 1 ~~~~~G~~Ve~~~~~---~~~W~~a~V~~~~~~~~~~V~~~~-----~~~~~~e~v~~~------------------~LR 54 (61)
T smart00743 1 SDFKKGDRVEVFSKE---EDSWWEAVVTKVLGDGKYLVRYLT-----ESEPLKETVDWS------------------DLR 54 (61)
T ss_pred CCcCCCCEEEEEECC---CCEEEEEEEEEECCCCEEEEEECC-----CCcccEEEEeHH------------------Hcc
Confidence 469999999999876 799999999999986666 99987 233578899874 599
Q ss_pred CCCCC
Q 001107 99 PLPPP 103 (1156)
Q Consensus 99 P~PP~ 103 (1156)
|.||.
T Consensus 55 p~~~w 59 (61)
T smart00743 55 PHPPW 59 (61)
T ss_pred cCCCC
Confidence 99875
No 28
>PHA00673 acetyltransferase domain containing protein
Probab=98.45 E-value=1.4e-06 Score=90.07 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=75.2
Q ss_pred EEEEEEeCCEEEEEEEEEEec------CceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchh--hHHH
Q 001107 1026 YTVLLERNEELVTVATVRIFG------EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPT--VLKT 1097 (1156)
Q Consensus 1026 y~~VL~~~~e~Vs~Arlri~g------~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~--A~~f 1097 (1156)
..+|.+.+|++||++.+.+.. ...+.|-.|.|.+++||||+|++||+.+|+.+++.|+..|.++|.++ .+.|
T Consensus 56 ~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~f 135 (154)
T PHA00673 56 HFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQL 135 (154)
T ss_pred EEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchHH
Confidence 455667799999999987742 35668999999999999999999999999999999999999999976 8999
Q ss_pred hhccCCcEEcChHHH
Q 001107 1098 WTTSFGFKRMTASER 1112 (1156)
Q Consensus 1098 w~~klGF~~~~~~~~ 1112 (1156)
|. +.|++.....+.
T Consensus 136 y~-~~g~~~~~~~~~ 149 (154)
T PHA00673 136 LP-AAGYRETNRTFY 149 (154)
T ss_pred HH-hCCchhhchhhh
Confidence 99 899998766554
No 29
>PRK13688 hypothetical protein; Provisional
Probab=98.44 E-value=7e-07 Score=92.29 Aligned_cols=79 Identities=13% Similarity=0.108 Sum_probs=62.1
Q ss_pred EEEEEEeCCEEEEEEEEEEe----------cCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhH
Q 001107 1026 YTVLLERNEELVTVATVRIF----------GEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVL 1095 (1156)
Q Consensus 1026 y~~VL~~~~e~Vs~Arlri~----------g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~ 1095 (1156)
.+++++.++++||++.+... ..+.++|-+++|.++|||||+|++||+.+++ .++. +.+.++..|.
T Consensus 46 ~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~----~~~~-~~~~~~~~a~ 120 (156)
T PRK13688 46 PFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKS----FQLP-IKTIARNKSK 120 (156)
T ss_pred CEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHH----hCCe-EEEEeccchH
Confidence 33456789999999887542 2466899999999999999999999986543 4554 4556778899
Q ss_pred HHhhccCCcEEcChH
Q 001107 1096 KTWTTSFGFKRMTAS 1110 (1156)
Q Consensus 1096 ~fw~~klGF~~~~~~ 1110 (1156)
.||+ ++||..++..
T Consensus 121 ~FY~-k~GF~~~~~~ 134 (156)
T PRK13688 121 DFWL-KLGFTPVEYK 134 (156)
T ss_pred HHHH-hCCCEEeEEe
Confidence 9999 9999987744
No 30
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.43 E-value=6.1e-07 Score=110.68 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=73.3
Q ss_pred EEEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCcEEc
Q 001107 1028 VLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRM 1107 (1156)
Q Consensus 1028 ~VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~~~ 1107 (1156)
+|++.+|++||.+.+.....+.++|..++|.|+|||||+|+.||+.+++.+++.|++.|.+.+ .+..||+ |+||+..
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~--~a~~FYe-k~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLT--RVPEFFM-KQGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEee--CcHHHHH-HCCCEEC
Confidence 567789999999999887777889999999999999999999999999999999999998865 3679999 9999998
Q ss_pred ChHHH
Q 001107 1108 TASER 1112 (1156)
Q Consensus 1108 ~~~~~ 1112 (1156)
+..++
T Consensus 583 ~~~~~ 587 (614)
T PRK12308 583 SKSLL 587 (614)
T ss_pred CcccC
Confidence 86543
No 31
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.43 E-value=8e-07 Score=105.43 Aligned_cols=84 Identities=21% Similarity=0.365 Sum_probs=72.7
Q ss_pred EEEEeCCEEEEEEEEEEec-CceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCcEE
Q 001107 1028 VLLERNEELVTVATVRIFG-EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKR 1106 (1156)
Q Consensus 1028 ~VL~~~~e~Vs~Arlri~g-~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~~ 1106 (1156)
++++.+|++||++.+..+. ...++|..++|.++|||+|+|++||+++++.+++.|+..+.+.+ ..|..||+ ++||+.
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~-k~GF~~ 414 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFL-ERGFVP 414 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHH-HCcCEE
Confidence 4567899999999887654 36789999999999999999999999999999999999997765 46899999 899999
Q ss_pred cChHHHh
Q 001107 1107 MTASERV 1113 (1156)
Q Consensus 1107 ~~~~~~~ 1113 (1156)
++...+.
T Consensus 415 ~g~~~~~ 421 (441)
T PRK05279 415 VDVDDLP 421 (441)
T ss_pred CChhhCc
Confidence 8865433
No 32
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.39 E-value=1e-06 Score=97.83 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=71.8
Q ss_pred cEEEEEEeCCEEEEEEEEEEe-cCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchh---hHHHhhc
Q 001107 1025 FYTVLLERNEELVTVATVRIF-GEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPT---VLKTWTT 1100 (1156)
Q Consensus 1025 fy~~VL~~~~e~Vs~Arlri~-g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~---A~~fw~~ 1100 (1156)
.+.++++.+|++||++.+.+. ....++|-.++|.|+|||+|+|+.||..+++.+++.|+..+.+.+... |..+|.
T Consensus 158 ~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~- 236 (266)
T TIGR03827 158 VVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFA- 236 (266)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHH-
Confidence 455667789999999998653 346789999999999999999999999999999999999998877655 567899
Q ss_pred cCCcEEcCh
Q 001107 1101 SFGFKRMTA 1109 (1156)
Q Consensus 1101 klGF~~~~~ 1109 (1156)
++||+..+.
T Consensus 237 k~GF~~~G~ 245 (266)
T TIGR03827 237 RLGYAYGGT 245 (266)
T ss_pred HcCCccccE
Confidence 899998664
No 33
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.34 E-value=1.6e-07 Score=112.22 Aligned_cols=89 Identities=33% Similarity=0.874 Sum_probs=72.9
Q ss_pred CcccccccCCCC-----ceeecCCCCCccccCCCCC--C-CCCCCCCccCCCC-cccCCCCCCCCccccccCCceeeccc
Q 001107 832 NDYKCSVCHFGG-----ELLLCDRCPSSFHRNCVGL--E-DVPDGDWFCPSCC-CSICGNSNSREEVEDVVDGSVLICHQ 902 (1156)
Q Consensus 832 ndd~C~vC~dgG-----eLl~CD~Cp~afH~~CL~l--~-~vP~g~W~Cp~C~-C~iCg~~~~~~~~~~~~~g~ll~Cdq 902 (1156)
....|.+|+..| .|+.|..|...||.+|+.+ . .+-.+-|.|+.|+ |..||.... +..+++|+.
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD--------~~kf~~Ck~ 88 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGD--------PKKFLLCKR 88 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCC--------ccccccccc
Confidence 345788888755 4999999999999999982 2 2334459999998 999985442 367899999
Q ss_pred ccccccccccccCCcchhccCCCCCcccCc
Q 001107 903 CELKYHRKCLQNGATDKLKTHAKETWFCSK 932 (1156)
Q Consensus 903 Cer~YH~~CL~~~~~~~L~e~p~~~WfC~~ 932 (1156)
|+-.||.+|..|. +.+++.+.|+|.+
T Consensus 89 cDvsyh~yc~~P~----~~~v~sg~~~ckk 114 (694)
T KOG4443|consen 89 CDVSYHCYCQKPP----NDKVPSGPWLCKK 114 (694)
T ss_pred ccccccccccCCc----cccccCcccccHH
Confidence 9999999999998 7889999999975
No 34
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.33 E-value=2.4e-06 Score=85.51 Aligned_cols=84 Identities=15% Similarity=0.283 Sum_probs=68.4
Q ss_pred cEEEEEEeCCEEEEEEEEEEec----CceEEEeEeeeecCccCCChhHHHHHHHHHHHHH-cCCcEEEecC---chhhHH
Q 001107 1025 FYTVLLERNEELVTVATVRIFG----EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLME-LGVEKLILPA---IPTVLK 1096 (1156)
Q Consensus 1025 fy~~VL~~~~e~Vs~Arlri~g----~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~-lgV~~LvL~A---~~~A~~ 1096 (1156)
.+.++...+|++||.+.+.... ...+++. ++|.++|||+|+|+.||+.+...+.+ .|.+++.+.. -..|+.
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 4566777889999999987532 2345654 89999999999999999999999988 7988877655 467899
Q ss_pred HhhccCCcEEcChH
Q 001107 1097 TWTTSFGFKRMTAS 1110 (1156)
Q Consensus 1097 fw~~klGF~~~~~~ 1110 (1156)
||+ ++||+..+..
T Consensus 130 ~y~-k~GF~~~g~~ 142 (162)
T PRK10140 130 VYK-KYGFEIEGTG 142 (162)
T ss_pred HHH-HCCCEEEeec
Confidence 999 9999987653
No 35
>PRK09831 putative acyltransferase; Provisional
Probab=98.32 E-value=1.4e-06 Score=87.47 Aligned_cols=74 Identities=22% Similarity=0.216 Sum_probs=62.3
Q ss_pred EEEEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCcEE
Q 001107 1027 TVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKR 1106 (1156)
Q Consensus 1027 ~~VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~~ 1106 (1156)
.+|...+|++||.+.+.. ..+..++|.++|||||+|++||.++++.+.. +.+.+...|+.||+ ++||..
T Consensus 55 ~~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~-k~Gf~~ 123 (147)
T PRK09831 55 VRVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFE-RYGFQT 123 (147)
T ss_pred eEEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHH-HCCCEE
Confidence 345578899999987642 4678899999999999999999999998876 55667788999999 999999
Q ss_pred cChHH
Q 001107 1107 MTASE 1111 (1156)
Q Consensus 1107 ~~~~~ 1111 (1156)
.+...
T Consensus 124 ~g~~~ 128 (147)
T PRK09831 124 VKQQR 128 (147)
T ss_pred eeccc
Confidence 88754
No 36
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.27 E-value=2.4e-06 Score=85.65 Aligned_cols=83 Identities=27% Similarity=0.394 Sum_probs=73.8
Q ss_pred cEEEEEEe--CCEEEEEEEEEEe-----cC-ceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHH
Q 001107 1025 FYTVLLER--NEELVTVATVRIF-----GE-KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLK 1096 (1156)
Q Consensus 1025 fy~~VL~~--~~e~Vs~Arlri~-----g~-~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~ 1096 (1156)
||-+|+++ .+++||+|+|.|- +. .-.+|.=|+|.++||||++|+.|++.+-.+++++|+-++.|.-.++.++
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~ 132 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVK 132 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhh
Confidence 67777775 3799999999873 32 3347999999999999999999999999999999999999999999999
Q ss_pred HhhccCCcEEcC
Q 001107 1097 TWTTSFGFKRMT 1108 (1156)
Q Consensus 1097 fw~~klGF~~~~ 1108 (1156)
||+ ||||+..+
T Consensus 133 FYe-KcG~s~~~ 143 (150)
T KOG3396|consen 133 FYE-KCGYSNAG 143 (150)
T ss_pred HHH-HcCccccc
Confidence 999 99999866
No 37
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.25 E-value=5.5e-06 Score=92.02 Aligned_cols=82 Identities=13% Similarity=0.087 Sum_probs=65.6
Q ss_pred cEEEEEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCc-hhhHHHhhccCC
Q 001107 1025 FYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAI-PTVLKTWTTSFG 1103 (1156)
Q Consensus 1025 fy~~VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~-~~A~~fw~~klG 1103 (1156)
.++++.+.+|++||.+.+.......+++-.++|+|+|||+|+|++||+.+++.+. +.-.|.+... ..|+.||+ ++|
T Consensus 46 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~-~~G 122 (292)
T TIGR03448 46 TRHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALAS-RLG 122 (292)
T ss_pred ceEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHH-HCC
Confidence 3566777899999999988765555789999999999999999999999998865 2234444433 57999999 899
Q ss_pred cEEcCh
Q 001107 1104 FKRMTA 1109 (1156)
Q Consensus 1104 F~~~~~ 1109 (1156)
|+....
T Consensus 123 f~~~~~ 128 (292)
T TIGR03448 123 LVPTRE 128 (292)
T ss_pred CEEccE
Confidence 988753
No 38
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.24 E-value=3.3e-07 Score=106.01 Aligned_cols=89 Identities=28% Similarity=0.776 Sum_probs=68.1
Q ss_pred ccCCCcccccccCCCC-----ceeecCCCCCccccCCCCCCCCCCCCCccCCCC--------cccCCCCCCCC-----c-
Q 001107 828 LQGENDYKCSVCHFGG-----ELLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCC--------CSICGNSNSRE-----E- 888 (1156)
Q Consensus 828 ~~~~ndd~C~vC~dgG-----eLl~CD~Cp~afH~~CL~l~~vP~g~W~Cp~C~--------C~iCg~~~~~~-----~- 888 (1156)
.+++-|+.|.+|.... -++.||+|+-+.|..|.++.-+|+|.|+|..|. |.+|-..+..- +
T Consensus 188 ~~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgr 267 (669)
T COG5141 188 PSDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGR 267 (669)
T ss_pred CchhhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCc
Confidence 3456678899998643 399999999999999999999999999999996 77775443210 0
Q ss_pred -----------------------ccc-----------------ccCCceeeccc--ccccccccccccCC
Q 001107 889 -----------------------VED-----------------VVDGSVLICHQ--CELKYHRKCLQNGA 916 (1156)
Q Consensus 889 -----------------------~~~-----------------~~~g~ll~Cdq--Cer~YH~~CL~~~~ 916 (1156)
.++ -..|..+.|.+ |-++||++|.+..+
T Consensus 268 W~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCArrag 337 (669)
T COG5141 268 WGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEFGGTCIQCSYFNCTRAYHVTCARRAG 337 (669)
T ss_pred hHhHhHHHhcchhccccccccchhhhhcccchhhHhheeeEEcccCcceeeecccchhhhhhhhhhhhcc
Confidence 000 02577888887 99999999998765
No 39
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.19 E-value=7.8e-06 Score=84.26 Aligned_cols=84 Identities=18% Similarity=0.289 Sum_probs=67.3
Q ss_pred EEEEEEeCCE-EEEEEEEEEecC---ceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCc---hhhHHHh
Q 001107 1026 YTVLLERNEE-LVTVATVRIFGE---KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAI---PTVLKTW 1098 (1156)
Q Consensus 1026 y~~VL~~~~e-~Vs~Arlri~g~---~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~---~~A~~fw 1098 (1156)
++++..+++. .||+.-...... .-++|-.+||+++|||||+|++|+.++.+.+++.|+..+||.+- ..|+.+|
T Consensus 57 ~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY 136 (165)
T KOG3139|consen 57 FCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLY 136 (165)
T ss_pred EEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHH
Confidence 3444343333 577766665433 35899999999999999999999999999999999999999876 4599999
Q ss_pred hccCCcEEcChH
Q 001107 1099 TTSFGFKRMTAS 1110 (1156)
Q Consensus 1099 ~~klGF~~~~~~ 1110 (1156)
+ +|||......
T Consensus 137 ~-sLGF~r~~r~ 147 (165)
T KOG3139|consen 137 E-SLGFKRDKRL 147 (165)
T ss_pred H-hcCceEecce
Confidence 9 8999996543
No 40
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.14 E-value=9.4e-06 Score=83.16 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=66.1
Q ss_pred EEEEEE-eCCEEEEEEEEEE--ecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEec---CchhhHHHhh
Q 001107 1026 YTVLLE-RNEELVTVATVRI--FGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILP---AIPTVLKTWT 1099 (1156)
Q Consensus 1026 y~~VL~-~~~e~Vs~Arlri--~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~---A~~~A~~fw~ 1099 (1156)
..++.+ .+|++||.+.+.. ...+.+.+-.+||.++|||+|+|++|+..+++.++..++.++.+. .-..|+.||+
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 445556 4679999876543 234567899999999999999999999999999999999887764 4566889999
Q ss_pred ccCCcEEcC
Q 001107 1100 TSFGFKRMT 1108 (1156)
Q Consensus 1100 ~klGF~~~~ 1108 (1156)
|+||+...
T Consensus 120 -k~G~~~~~ 127 (157)
T TIGR02406 120 -ALARRRGV 127 (157)
T ss_pred -HhCcccCC
Confidence 89997733
No 41
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.09 E-value=1.1e-05 Score=89.58 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=63.7
Q ss_pred CCEEEEEEEEEEec--CceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCc---hhhHHHhhccCCcEEc
Q 001107 1033 NEELVTVATVRIFG--EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAI---PTVLKTWTTSFGFKRM 1107 (1156)
Q Consensus 1033 ~~e~Vs~Arlri~g--~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~---~~A~~fw~~klGF~~~ 1107 (1156)
+|++||.+.+.... ...++|-.++|.++|||||+|+.||..+++.+++.|+..+.+... ..|+.||+ ++||+..
T Consensus 208 ~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~-k~GF~~~ 286 (292)
T TIGR03448 208 PGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYE-KLGFTVA 286 (292)
T ss_pred CCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHH-HcCCEEc
Confidence 68999987666543 346788889999999999999999999999999999998877654 46999999 9999875
Q ss_pred C
Q 001107 1108 T 1108 (1156)
Q Consensus 1108 ~ 1108 (1156)
+
T Consensus 287 ~ 287 (292)
T TIGR03448 287 E 287 (292)
T ss_pred c
Confidence 4
No 42
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.08 E-value=2.3e-05 Score=78.39 Aligned_cols=82 Identities=22% Similarity=0.389 Sum_probs=66.1
Q ss_pred EEEEEEe-CCEEEEEEEEEEec--CceEEEeEeeeecCccCCChhHHHHHHHHHHH-HHcCCcEEEecC---chhhHHHh
Q 001107 1026 YTVLLER-NEELVTVATVRIFG--EKAAEIPLVGTRFQYRRLGMCRILMNELEKRL-MELGVEKLILPA---IPTVLKTW 1098 (1156)
Q Consensus 1026 y~~VL~~-~~e~Vs~Arlri~g--~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l-~~lgV~~LvL~A---~~~A~~fw 1098 (1156)
+.+++.. +|++||.+.++... ...+++- +-+.++||++|+|+.|+..+++.| +++|+++|.+.. ...|+.||
T Consensus 51 ~~~~v~~~~g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~ 129 (155)
T PF13420_consen 51 RLFLVAEEDGKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFY 129 (155)
T ss_dssp EEEEEEECTTEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHH
T ss_pred cEEEEEEcCCcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHH
Confidence 4444454 99999999999754 4677887 555599999999999999999999 999999987543 46699999
Q ss_pred hccCCcEEcCh
Q 001107 1099 TTSFGFKRMTA 1109 (1156)
Q Consensus 1099 ~~klGF~~~~~ 1109 (1156)
+ ++||+..+.
T Consensus 130 ~-~~GF~~~g~ 139 (155)
T PF13420_consen 130 K-KLGFEEEGE 139 (155)
T ss_dssp H-HTTEEEEEE
T ss_pred H-hCCCEEEEE
Confidence 9 899999664
No 43
>PHA01807 hypothetical protein
Probab=98.08 E-value=8.7e-06 Score=84.06 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=66.7
Q ss_pred cEEEEEEeCCEEEEEEEEEEecC----ceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchh---hHHH
Q 001107 1025 FYTVLLERNEELVTVATVRIFGE----KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPT---VLKT 1097 (1156)
Q Consensus 1025 fy~~VL~~~~e~Vs~Arlri~g~----~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~---A~~f 1097 (1156)
.+.++.+.+|++||.+.+..... .+.+|..|.|.++|||+|+|+.||+++++.+++.|+..|++..... |+.|
T Consensus 53 ~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~ 132 (153)
T PHA01807 53 RTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIH 132 (153)
T ss_pred ceEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHH
Confidence 34466778999999999865432 2334566899999999999999999999999999999998877654 7899
Q ss_pred hhccCCcEEcChH
Q 001107 1098 WTTSFGFKRMTAS 1110 (1156)
Q Consensus 1098 w~~klGF~~~~~~ 1110 (1156)
|+ .|++.+.+
T Consensus 133 y~---~~~~~~~~ 142 (153)
T PHA01807 133 YR---RVKPYGQE 142 (153)
T ss_pred HH---hcCccCCc
Confidence 99 56776644
No 44
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.07 E-value=1.4e-05 Score=97.62 Aligned_cols=84 Identities=13% Similarity=0.190 Sum_probs=68.1
Q ss_pred ccEEEEEEe--CCEEEEEEEEEEe------cCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEec---Cch
Q 001107 1024 GFYTVLLER--NEELVTVATVRIF------GEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILP---AIP 1092 (1156)
Q Consensus 1024 Gfy~~VL~~--~~e~Vs~Arlri~------g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~---A~~ 1092 (1156)
+++.+|.+. +|++||++....+ ....++|-.|+|+++|||||+|++||.++++.+++.|+.++.|. ...
T Consensus 122 ~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~ 201 (547)
T TIGR03103 122 AITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNE 201 (547)
T ss_pred CceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCH
Confidence 445555554 6899999875322 12347899999999999999999999999999999999998654 457
Q ss_pred hhHHHhhccCCcEEcC
Q 001107 1093 TVLKTWTTSFGFKRMT 1108 (1156)
Q Consensus 1093 ~A~~fw~~klGF~~~~ 1108 (1156)
.|+.||+ +|||+.++
T Consensus 202 ~Ai~fY~-klGf~~~~ 216 (547)
T TIGR03103 202 QAIALYE-KLGFRRIP 216 (547)
T ss_pred HHHHHHH-HCCCEEee
Confidence 7999999 89998865
No 45
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=98.05 E-value=1.7e-05 Score=80.77 Aligned_cols=74 Identities=24% Similarity=0.420 Sum_probs=62.4
Q ss_pred EEEEEEEEEEecC-----ceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCC-cEEEecCc---hhhHHHhhccCCcE
Q 001107 1035 ELVTVATVRIFGE-----KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGV-EKLILPAI---PTVLKTWTTSFGFK 1105 (1156)
Q Consensus 1035 e~Vs~Arlri~g~-----~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV-~~LvL~A~---~~A~~fw~~klGF~ 1105 (1156)
+++|....+.... ..++|-.|||+|+|||+|+|++|++.+++.+.+.+. ..+.|-.. ..|+.||+ ++||+
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~-~~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYR-KLGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHH-HcCCE
Confidence 4888887764333 278999999999999999999999999999999986 78777766 45999999 89999
Q ss_pred EcCh
Q 001107 1106 RMTA 1109 (1156)
Q Consensus 1106 ~~~~ 1109 (1156)
.+..
T Consensus 151 ~~~~ 154 (177)
T COG0456 151 VVKI 154 (177)
T ss_pred EEee
Confidence 8653
No 46
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.04 E-value=9.8e-07 Score=96.24 Aligned_cols=104 Identities=26% Similarity=0.608 Sum_probs=67.8
Q ss_pred cccCCCeEEEeecCCCcccccccccCCceEcCCCCCeeeecceeecCCCC-CcCCCceeEccCCcchhhhhHHHhhcccc
Q 001107 734 IILPRAKVTYCSRKKRRPKAEGRITRDGIKCKCCGKVYTLSGFEDHAGST-YCNPASHIFLQDGRSLLDCQLQVLKNGNI 812 (1156)
Q Consensus 734 vvl~~~~V~Y~~~k~~~~~l~G~it~~GI~C~cC~~~fs~S~FE~HAG~~-~~~P~~~I~L~dGkSL~~c~~~~~~~~~~ 812 (1156)
++.|+.-..++-+......+.|. ..+.|.|.-|+..=|||++...+.+. .-+-|+ ++ |.
T Consensus 220 ~a~Pn~YCDFclgdsr~nkkt~~-peelvscsdcgrsghpsclqft~nm~~avk~yr-------wq---ci--------- 279 (336)
T KOG1244|consen 220 IAQPNPYCDFCLGDSRENKKTGM-PEELVSCSDCGRSGHPSCLQFTANMIAAVKTYR-------WQ---CI--------- 279 (336)
T ss_pred cccCCcccceeccccccccccCC-chhhcchhhcCCCCCcchhhhhHHHHHHHHhhe-------ee---ee---------
Confidence 55555545454443333333332 34568999999999999877665541 111111 11 10
Q ss_pred cCCCCCCcccccCccccCCCcccccccCCC---CceeecCCCCCccccCCCC--CCCCCCCCCccCCCC
Q 001107 813 RNFTGEPHNRLKGNLLQGENDYKCSVCHFG---GELLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCC 876 (1156)
Q Consensus 813 ~~~~~~~~sr~k~~~~~~~ndd~C~vC~dg---GeLl~CD~Cp~afH~~CL~--l~~vP~g~W~Cp~C~ 876 (1156)
.-.+|.+|+.. .+||+||.|+++||++||. +.+.|+|.|.|.-|.
T Consensus 280 -------------------eck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG 329 (336)
T KOG1244|consen 280 -------------------ECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCL 329 (336)
T ss_pred -------------------ecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence 12358888853 4599999999999999998 778899999998874
No 47
>PRK10514 putative acetyltransferase; Provisional
Probab=98.03 E-value=1.8e-05 Score=78.47 Aligned_cols=87 Identities=16% Similarity=0.147 Sum_probs=63.0
Q ss_pred EEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCcEEcC
Q 001107 1029 LLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRMT 1108 (1156)
Q Consensus 1029 VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~~~~ 1108 (1156)
+...++++||.+.+.- .++..++|.++|||+|+|++||+.+++.+.. +...+...-..|..||+ |+||+..+
T Consensus 54 ~~~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~ye-k~Gf~~~~ 125 (145)
T PRK10514 54 AVDERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYK-KMGFKVTG 125 (145)
T ss_pred EEecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHH-HCCCEEec
Confidence 3346789999887642 3566899999999999999999999987643 34444555578999999 99999987
Q ss_pred hHHHh-ccccceeeee
Q 001107 1109 ASERV-QLVDYTFLNF 1123 (1156)
Q Consensus 1109 ~~~~~-~~~~~~~m~F 1123 (1156)
..... ....+..+.|
T Consensus 126 ~~~~~~~~~~~~~~~~ 141 (145)
T PRK10514 126 RSEVDDQGRPYPLLHL 141 (145)
T ss_pred ccccCCCCCccceEEE
Confidence 54322 2334444433
No 48
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.01 E-value=3.5e-06 Score=101.04 Aligned_cols=44 Identities=39% Similarity=0.929 Sum_probs=36.1
Q ss_pred cccccccCCCCceeecCCCCCccccCCCCC---CCCCCCCCccCCCC
Q 001107 833 DYKCSVCHFGGELLLCDRCPSSFHRNCVGL---EDVPDGDWFCPSCC 876 (1156)
Q Consensus 833 dd~C~vC~dgGeLl~CD~Cp~afH~~CL~l---~~vP~g~W~Cp~C~ 876 (1156)
.+.|.+|..+|++++|+.|+.+||..|-+. ...+.+.|.|..|.
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~ 93 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCP 93 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCC
Confidence 567999999999999999999999999882 33444578777764
No 49
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.98 E-value=1.8e-06 Score=103.39 Aligned_cols=46 Identities=43% Similarity=1.143 Sum_probs=41.6
Q ss_pred cccccccCCCCce---eecCCCCCccccCCCC----CCCCCCCCCccCCCCcc
Q 001107 833 DYKCSVCHFGGEL---LLCDRCPSSFHRNCVG----LEDVPDGDWFCPSCCCS 878 (1156)
Q Consensus 833 dd~C~vC~dgGeL---l~CD~Cp~afH~~CL~----l~~vP~g~W~Cp~C~C~ 878 (1156)
+++|..|+..|.. ||||+||++||+.||+ .+.+|.|.|+|+.|.|.
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 5699999998876 9999999999999998 46899999999999864
No 50
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.98 E-value=2.9e-05 Score=72.55 Aligned_cols=75 Identities=24% Similarity=0.363 Sum_probs=55.9
Q ss_pred CCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEe--cCchhhHHHhhccCCcEEcCh
Q 001107 1033 NEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLIL--PAIPTVLKTWTTSFGFKRMTA 1109 (1156)
Q Consensus 1033 ~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL--~A~~~A~~fw~~klGF~~~~~ 1109 (1156)
+++.++.+...+.... ++|..|.|.|+|||+|+|+.|+.++-+.+.+.|...+.. ..-..|+.+|+ |+||+.+..
T Consensus 6 ~~~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~-klGf~~~~~ 82 (86)
T PF08445_consen 6 DGELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYE-KLGFREIEE 82 (86)
T ss_dssp CTCCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHH-HCT-EEEEE
T ss_pred ECCccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHH-HcCCEEEEE
Confidence 3355555555555555 899999999999999999999999999988888875332 33456899999 999998743
No 51
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.97 E-value=2.1e-05 Score=95.27 Aligned_cols=84 Identities=23% Similarity=0.272 Sum_probs=68.7
Q ss_pred EEEEEEe---CCEEEEEEEEEEecCceE-----------EEeEeee--------ecCccCCChhHHHHHHHHHHHHHcCC
Q 001107 1026 YTVLLER---NEELVTVATVRIFGEKAA-----------EIPLVGT--------RFQYRRLGMCRILMNELEKRLMELGV 1083 (1156)
Q Consensus 1026 y~~VL~~---~~e~Vs~Arlri~g~~~A-----------EIp~VAt--------~~~yRgqG~Gr~Lm~aIE~~l~~lgV 1083 (1156)
-+|+.|. ++.+||-.++|....+.. |+-..++ .++|||+|+|++||+++|+.|++.|+
T Consensus 412 e~F~~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~ 491 (522)
T TIGR01211 412 EFFLSYEDPKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGS 491 (522)
T ss_pred eEEEEEEcCCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCC
Confidence 4455555 678999999998754322 4544444 58999999999999999999999999
Q ss_pred cEEEecCchhhHHHhhccCCcEEcChH
Q 001107 1084 EKLILPAIPTVLKTWTTSFGFKRMTAS 1110 (1156)
Q Consensus 1084 ~~LvL~A~~~A~~fw~~klGF~~~~~~ 1110 (1156)
+.|.|.+...|..||+ ++||...+.-
T Consensus 492 ~~i~v~s~~~A~~FY~-klGf~~~g~y 517 (522)
T TIGR01211 492 EKILVISGIGVREYYR-KLGYELDGPY 517 (522)
T ss_pred CEEEEeeCchHHHHHH-HCCCEEEcce
Confidence 9999999999999999 9999986643
No 52
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.96 E-value=9.9e-07 Score=105.69 Aligned_cols=104 Identities=29% Similarity=0.695 Sum_probs=71.4
Q ss_pred cccccCCCCc---eeecCCCCCccccCCCC--CCCCCCCCCccCCCC-cccCCC--------------------------
Q 001107 835 KCSVCHFGGE---LLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCC-CSICGN-------------------------- 882 (1156)
Q Consensus 835 ~C~vC~dgGe---Ll~CD~Cp~afH~~CL~--l~~vP~g~W~Cp~C~-C~iCg~-------------------------- 882 (1156)
.|..|+.+|+ +++|+.|+-+||.+|.. ...++.|.|+|+.|. |.-|+.
T Consensus 70 vCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s~~~~~~~~~~~~c~s~~~cP 149 (694)
T KOG4443|consen 70 VCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLSLDLQEGYLQCAPCASLSYCP 149 (694)
T ss_pred eeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccchhhhccCcccccccccccCc
Confidence 4788886554 99999999999999997 689999999999885 433332
Q ss_pred ----CCCCCccccccCCceeecccccccccccccccCCcchhccCCCCCcccCccch-------hhHhhhhhh
Q 001107 883 ----SNSREEVEDVVDGSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCE-------EIFLGLQRL 944 (1156)
Q Consensus 883 ----~~~~~~~~~~~~g~ll~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfC~~~C~-------~i~~~L~~l 944 (1156)
.+.+.+ .-.++.|++|.+|-|..|-.......+...-.-.+-|+ .|. .|.+.|+++
T Consensus 150 vc~~~Y~~~e-----~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~vD~~~~CS-~CR~es~qvKdi~~~vqe~ 216 (694)
T KOG4443|consen 150 VCLIVYQDSE-----SLPMVCCSICQRWSHGGCDGISDDKYMQAQVDLQYKCS-TCRGESYQVKDISDALQET 216 (694)
T ss_pred hHHHhhhhcc-----chhhHHHHHhcccccCCCCccchHHHHHHhhhhhcccc-eeehhhhhhhhHHHHHHhh
Confidence 111111 12248999999999999988765432332223466776 364 455556655
No 53
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=97.96 E-value=3.7e-05 Score=77.16 Aligned_cols=88 Identities=18% Similarity=0.301 Sum_probs=71.3
Q ss_pred cccEEEEEEeCCEEEEEEEEEE------ecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHc-CCcEEEecCch---
Q 001107 1023 QGFYTVLLERNEELVTVATVRI------FGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMEL-GVEKLILPAIP--- 1092 (1156)
Q Consensus 1023 ~Gfy~~VL~~~~e~Vs~Arlri------~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~l-gV~~LvL~A~~--- 1092 (1156)
.+++.+|++.+|++||.+.+.- .......+-.+++.++|||+|+|+.+|.++.+.+.+. +++++++....
T Consensus 46 ~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~ 125 (152)
T PF13523_consen 46 PGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNT 125 (152)
T ss_dssp TTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-H
T ss_pred CCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCH
Confidence 5678899999999999887743 1345667999999999999999999999999988876 79999987765
Q ss_pred hhHHHhhccCCcEEcChHH
Q 001107 1093 TVLKTWTTSFGFKRMTASE 1111 (1156)
Q Consensus 1093 ~A~~fw~~klGF~~~~~~~ 1111 (1156)
-|+..|+ |+||+.++..+
T Consensus 126 ~~~~~~~-k~GF~~~g~~~ 143 (152)
T PF13523_consen 126 RAIRLYE-KAGFRKVGEFE 143 (152)
T ss_dssp HHHHHHH-HTT-EEEEEEE
T ss_pred HHHHHHH-HcCCEEeeEEE
Confidence 5899999 99999987654
No 54
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=97.95 E-value=4.5e-05 Score=62.36 Aligned_cols=61 Identities=26% Similarity=0.325 Sum_probs=54.8
Q ss_pred EEEEeCCEEEEEEEEEEec--CceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEe
Q 001107 1028 VLLERNEELVTVATVRIFG--EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLIL 1088 (1156)
Q Consensus 1028 ~VL~~~~e~Vs~Arlri~g--~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL 1088 (1156)
++++.++++||.+.+.... ...+++-.++|.++|||+|+|+.||..+.+.+.+.|++++.+
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3556789999999998765 478999999999999999999999999999999999999876
No 55
>PRK01346 hypothetical protein; Provisional
Probab=97.95 E-value=3.2e-05 Score=90.68 Aligned_cols=80 Identities=28% Similarity=0.247 Sum_probs=68.1
Q ss_pred EEEEEeCCEEEEEEEEEEe------cC--ceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHh
Q 001107 1027 TVLLERNEELVTVATVRIF------GE--KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTW 1098 (1156)
Q Consensus 1027 ~~VL~~~~e~Vs~Arlri~------g~--~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw 1098 (1156)
.++.+.+|++||.+.+..+ +. ..+.|..|||.|+|||+|+|++||..+++.+++.|+..+.|.+.. ..||
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y 126 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIY 126 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhH
Confidence 4667889999999987643 22 468899999999999999999999999999999999988888765 4799
Q ss_pred hccCCcEEcCh
Q 001107 1099 TTSFGFKRMTA 1109 (1156)
Q Consensus 1099 ~~klGF~~~~~ 1109 (1156)
. +|||.....
T Consensus 127 ~-r~Gf~~~~~ 136 (411)
T PRK01346 127 G-RFGYGPATY 136 (411)
T ss_pred h-hCCCeeccc
Confidence 9 899988654
No 56
>PRK10562 putative acetyltransferase; Provisional
Probab=97.93 E-value=3e-05 Score=77.48 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=60.8
Q ss_pred EEEEEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCcE
Q 001107 1026 YTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFK 1105 (1156)
Q Consensus 1026 y~~VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~ 1105 (1156)
..+++..+|++||.+.+... ..+..++|.++|||+|+|+.||+.+++.+..+. -.+...-..+..||+ ++||+
T Consensus 49 ~~~v~~~~~~~iG~~~~~~~----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~--~~v~~~N~~s~~~y~-k~Gf~ 121 (145)
T PRK10562 49 QTWVWEEDGKLLGFVSVLEG----RFVGALFVAPKAVRRGIGKALMQHVQQRYPHLS--LEVYQKNQRAVNFYH-AQGFR 121 (145)
T ss_pred cEEEEEECCEEEEEEEEeec----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCeEE--EEEEcCChHHHHHHH-HCCCE
Confidence 34566778999999887422 367889999999999999999999988654322 223344567899999 99999
Q ss_pred EcChHHHh
Q 001107 1106 RMTASERV 1113 (1156)
Q Consensus 1106 ~~~~~~~~ 1113 (1156)
.++....+
T Consensus 122 ~~~~~~~~ 129 (145)
T PRK10562 122 IVDSAWQE 129 (145)
T ss_pred EccccccC
Confidence 98864333
No 57
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=97.90 E-value=5.4e-05 Score=78.69 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=67.4
Q ss_pred EEEEEEeCCEEEEEEEEEEec--CceEEEeEeeeecCccCCChhHHHHHHHHHHHH-HcCCcEEEecC---chhhHHHhh
Q 001107 1026 YTVLLERNEELVTVATVRIFG--EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLM-ELGVEKLILPA---IPTVLKTWT 1099 (1156)
Q Consensus 1026 y~~VL~~~~e~Vs~Arlri~g--~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~-~lgV~~LvL~A---~~~A~~fw~ 1099 (1156)
+.++++.+|++||.+.+.... ...+++. +++.++|||+|+|+.++.++.+.+. .+|+++|++.. -..|+.||+
T Consensus 58 ~~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~ye 136 (186)
T PRK15130 58 RRFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYR 136 (186)
T ss_pred cEEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHH
Confidence 455667899999999886653 3466775 8999999999999999999998876 58999998764 457899999
Q ss_pred ccCCcEEcCh
Q 001107 1100 TSFGFKRMTA 1109 (1156)
Q Consensus 1100 ~klGF~~~~~ 1109 (1156)
++||+..+.
T Consensus 137 -k~GF~~~~~ 145 (186)
T PRK15130 137 -KLGFEVEGE 145 (186)
T ss_pred -HCCCEEEEE
Confidence 899998764
No 58
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.89 E-value=3.4e-06 Score=101.89 Aligned_cols=117 Identities=19% Similarity=0.407 Sum_probs=69.6
Q ss_pred ccCCcccCCCeEEEeecCCCcccccccccCCceEcCCCCCeeeecceeecCCCCCcCCCceeEccCCcchhhhhHHHhhc
Q 001107 730 IDNNIILPRAKVTYCSRKKRRPKAEGRITRDGIKCKCCGKVYTLSGFEDHAGSTYCNPASHIFLQDGRSLLDCQLQVLKN 809 (1156)
Q Consensus 730 Id~gvvl~~~~V~Y~~~k~~~~~l~G~it~~GI~C~cC~~~fs~S~FE~HAG~~~~~P~~~I~L~dGkSL~~c~~~~~~~ 809 (1156)
+.|+++++.+|+.-|.+-.+ .|+.|+.+|.-...-...+. ..-+..+.++...+.++ .
T Consensus 142 k~c~H~FC~~Ci~sWsR~aq-------------TCPiDR~EF~~v~V~eS~~~--~~~vR~lP~EEs~~~~e----~--- 199 (1134)
T KOG0825|consen 142 KHTAHYFCEECVGSWSRCAQ-------------TCPVDRGEFGEVKVLESTGI--EANVRCLPSEESENILE----K--- 199 (1134)
T ss_pred cccccccHHHHhhhhhhhcc-------------cCchhhhhhheeeeeccccc--cceeEecchhhhhhhhh----h---
Confidence 44788888888887776544 79999998865443322221 01011111111111000 0
Q ss_pred ccccCCCCCCcccccCccccCCCcccccccCCCCc---eeecCCCCCc-cccCCCC--CCCCCCCCCccCCCC
Q 001107 810 GNIRNFTGEPHNRLKGNLLQGENDYKCSVCHFGGE---LLLCDRCPSS-FHRNCVG--LEDVPDGDWFCPSCC 876 (1156)
Q Consensus 810 ~~~~~~~~~~~sr~k~~~~~~~ndd~C~vC~dgGe---Ll~CD~Cp~a-fH~~CL~--l~~vP~g~W~Cp~C~ 876 (1156)
.-....+.+ ........-|.+|..... ||+||.|+.+ ||.+||+ +.++|.+.|||+.|.
T Consensus 200 --~~d~~~d~~------~~~~~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 200 --GGDEKQDQI------SGLSQEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred --ccccccccc------cCcccccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcch
Confidence 000000111 012234456999986543 9999999999 9999998 678999999999996
No 59
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.89 E-value=3.7e-06 Score=92.25 Aligned_cols=76 Identities=29% Similarity=0.531 Sum_probs=56.6
Q ss_pred cCCceEcCCCCCeeeecceeecCCC---CCcCCCceeEccCCcchhhhhHHHhhcccccCCCCCCcccccCccccCCCcc
Q 001107 758 TRDGIKCKCCGKVYTLSGFEDHAGS---TYCNPASHIFLQDGRSLLDCQLQVLKNGNIRNFTGEPHNRLKGNLLQGENDY 834 (1156)
Q Consensus 758 t~~GI~C~cC~~~fs~S~FE~HAG~---~~~~P~~~I~L~dGkSL~~c~~~~~~~~~~~~~~~~~~sr~k~~~~~~~ndd 834 (1156)
..+.|+|.-|...+||++.+..-.. -..-|| .|. .-.
T Consensus 276 ~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W------------~C~----------------------------~C~ 315 (381)
T KOG1512|consen 276 RNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFW------------KCS----------------------------SCE 315 (381)
T ss_pred hccceeecccccCCCCcchhcCHHHHhHHhhcch------------hhc----------------------------ccH
Confidence 4567999999999999998754321 111111 111 123
Q ss_pred cccccCCC---CceeecCCCCCccccCCCCCCCCCCCCCccC
Q 001107 835 KCSVCHFG---GELLLCDRCPSSFHRNCVGLEDVPDGDWFCP 873 (1156)
Q Consensus 835 ~C~vC~dg---GeLl~CD~Cp~afH~~CL~l~~vP~g~W~Cp 873 (1156)
.|.+|+.+ .++++||.|+++||.+|++|..+|.|.|.|-
T Consensus 316 lC~IC~~P~~E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD 357 (381)
T KOG1512|consen 316 LCRICLGPVIESEHLFCDVCDRGPHTLCVGLQDLPRGEWICD 357 (381)
T ss_pred hhhccCCcccchheeccccccCCCCccccccccccCccchhh
Confidence 48899875 4699999999999999999999999999996
No 60
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.89 E-value=7.1e-06 Score=96.60 Aligned_cols=107 Identities=25% Similarity=0.469 Sum_probs=78.7
Q ss_pred ccccccCC-----CCceeecCCCCCccccCCCCCCCCCCCCCccCCCC--------------------------------
Q 001107 834 YKCSVCHF-----GGELLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCC-------------------------------- 876 (1156)
Q Consensus 834 d~C~vC~d-----gGeLl~CD~Cp~afH~~CL~l~~vP~g~W~Cp~C~-------------------------------- 876 (1156)
..|.+|.. +.++..|+.|.++||..|........+.|.|..|.
T Consensus 84 ~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~wD~ 163 (464)
T KOG4323|consen 84 LNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASLDWDS 163 (464)
T ss_pred cCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccccccccccccccccCcccccccCc
Confidence 34777764 34588899999999999996555555677777665
Q ss_pred -------cccCCCCCCCCccccccCCceeecccccccccccccccCCcchhccCCCCCcccCccchhhHhhhhhhcCC
Q 001107 877 -------CSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCEEIFLGLQRLLGK 947 (1156)
Q Consensus 877 -------C~iCg~~~~~~~~~~~~~g~ll~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfC~~~C~~i~~~L~~llg~ 947 (1156)
|.+|....... -+.|++|+.|..+||..|.++.....+...+.+.|||.. |..-.+.+..+.+.
T Consensus 164 ~~~~n~qc~vC~~g~~~~------~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~-C~~~~~~~~r~t~~ 234 (464)
T KOG4323|consen 164 GHKVNLQCSVCYCGGPGA------GNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDV-CNRGPKKVPRLTLR 234 (464)
T ss_pred cccccceeeeeecCCcCc------cceeeeecccccHHHHHhccCCCCHhhccCccceEeehh-hccchhhccccccc
Confidence 55565443211 247999999999999999999887767778999999996 66655555555443
No 61
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=97.86 E-value=8.7e-05 Score=74.18 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=67.2
Q ss_pred EEEEEeCCEEEEEEEEEEec--CceEEEeEeeeecCccCCChhHHHHHHHHHHHHH-cCCcEEEe---cCchhhHHHhhc
Q 001107 1027 TVLLERNEELVTVATVRIFG--EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLME-LGVEKLIL---PAIPTVLKTWTT 1100 (1156)
Q Consensus 1027 ~~VL~~~~e~Vs~Arlri~g--~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~-lgV~~LvL---~A~~~A~~fw~~ 1100 (1156)
.++++.+|++||.+.+.... ...+++... +.+.+| +|+|+.++.++++.+.+ +|+.+|.+ +....++.||+
T Consensus 53 ~~~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~- 129 (156)
T TIGR03585 53 YWIVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYE- 129 (156)
T ss_pred EEEEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHH-
Confidence 45557899999999997655 456788766 889999 99999999999999874 79999976 56678999999
Q ss_pred cCCcEEcChH
Q 001107 1101 SFGFKRMTAS 1110 (1156)
Q Consensus 1101 klGF~~~~~~ 1110 (1156)
++||+..+..
T Consensus 130 k~Gf~~~g~~ 139 (156)
T TIGR03585 130 KFGFEREGVF 139 (156)
T ss_pred HcCCeEeeee
Confidence 9999987743
No 62
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.83 E-value=7.3e-05 Score=85.39 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=67.9
Q ss_pred cEEEEEEe---CCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCc-----hhhHH
Q 001107 1025 FYTVLLER---NEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAI-----PTVLK 1096 (1156)
Q Consensus 1025 fy~~VL~~---~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~-----~~A~~ 1096 (1156)
.|++.+.+ ++.+||.+.++.. .+.++|-.+++++.+||+|+|+.||.++++.+++.|++.|.|... ..|..
T Consensus 231 ~~~~~~~d~~gd~givG~~~~~~~-~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~ 309 (320)
T TIGR01686 231 IVTVSMSDRFGDSGIIGIFVFEKK-EGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLS 309 (320)
T ss_pred EEEEEEEecCCCCceEEEEEEEec-CCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHH
Confidence 45554443 5689999988754 566899999999999999999999999999999999999888543 46999
Q ss_pred HhhccCCcEEc
Q 001107 1097 TWTTSFGFKRM 1107 (1156)
Q Consensus 1097 fw~~klGF~~~ 1107 (1156)
||+ ++||...
T Consensus 310 fY~-~~GF~~~ 319 (320)
T TIGR01686 310 FYE-QIGFEDE 319 (320)
T ss_pred HHH-HcCCccC
Confidence 999 8999854
No 63
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.83 E-value=9.2e-06 Score=103.57 Aligned_cols=48 Identities=33% Similarity=0.938 Sum_probs=42.5
Q ss_pred cCCCcccccccCCCC-----ceeecCCCCCccccCCCCCCCCCCCCCccCCCC
Q 001107 829 QGENDYKCSVCHFGG-----ELLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCC 876 (1156)
Q Consensus 829 ~~~ndd~C~vC~dgG-----eLl~CD~Cp~afH~~CL~l~~vP~g~W~Cp~C~ 876 (1156)
..+.|..|.+|.++. .++.||.|+.++|+.|++..-+|+|.|.|..|.
T Consensus 215 ~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl 267 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCL 267 (1051)
T ss_pred ccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhc
Confidence 345678899999753 499999999999999999999999999999996
No 64
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.83 E-value=4.5e-05 Score=84.28 Aligned_cols=82 Identities=24% Similarity=0.331 Sum_probs=68.3
Q ss_pred EEEEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcE-EEec-CchhhHHHhhccCCc
Q 001107 1027 TVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEK-LILP-AIPTVLKTWTTSFGF 1104 (1156)
Q Consensus 1027 ~~VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~-LvL~-A~~~A~~fw~~klGF 1104 (1156)
++.+..+|+||+.|.....+...|+|..|+|.|+|||+||+.+|+.++=..+-..|-.. |... .-+.|...|+ ++||
T Consensus 179 ~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~-riGF 257 (268)
T COG3393 179 TYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQ-RIGF 257 (268)
T ss_pred EEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHH-HhCC
Confidence 34456677999999999999999999999999999999999999999877766666654 4443 4477899999 9999
Q ss_pred EEcCh
Q 001107 1105 KRMTA 1109 (1156)
Q Consensus 1105 ~~~~~ 1109 (1156)
+..++
T Consensus 258 ~~~g~ 262 (268)
T COG3393 258 REIGE 262 (268)
T ss_pred eecce
Confidence 98763
No 65
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.81 E-value=7.3e-06 Score=99.03 Aligned_cols=109 Identities=29% Similarity=0.770 Sum_probs=76.9
Q ss_pred cCCCcccccccCCC-----CceeecCCCCCccccCCCCCCCCCCCCCccCCCC------cccCCCCCCCCc---------
Q 001107 829 QGENDYKCSVCHFG-----GELLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCC------CSICGNSNSREE--------- 888 (1156)
Q Consensus 829 ~~~ndd~C~vC~dg-----GeLl~CD~Cp~afH~~CL~l~~vP~g~W~Cp~C~------C~iCg~~~~~~~--------- 888 (1156)
...++..|-||..+ .+|++||.|....|+.|.++.++|+|.|.|..|. |..|-+.+....
T Consensus 267 e~dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~wA 346 (893)
T KOG0954|consen 267 EYDEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKWA 346 (893)
T ss_pred eccccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccCCCCeee
Confidence 34478889999865 4699999999999999999999999999999996 666644332100
Q ss_pred ----------c-----------cc-----------------ccCCceeecc--cccccccccccccCCcch---hccCC-
Q 001107 889 ----------V-----------ED-----------------VVDGSVLICH--QCELKYHRKCLQNGATDK---LKTHA- 924 (1156)
Q Consensus 889 ----------~-----------~~-----------------~~~g~ll~Cd--qCer~YH~~CL~~~~~~~---L~e~p- 924 (1156)
. -. ...|..+.|. .|..+||+.|....+... +.+..
T Consensus 347 HvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k~GACIqCs~k~C~t~fHv~CA~~aG~~~~~~~~~~D~ 426 (893)
T KOG0954|consen 347 HVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVKSGACIQCSNKTCRTAFHVTCAFEAGLEMKTILKENDE 426 (893)
T ss_pred EeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhcccCcceEEecccchhhhccchhhhhcCCeeeeeeccCCc
Confidence 0 00 1246677887 599999999998887542 11211
Q ss_pred -CCCcccCccchhhH
Q 001107 925 -KETWFCSKKCEEIF 938 (1156)
Q Consensus 925 -~~~WfC~~~C~~i~ 938 (1156)
+..-||+. |..+.
T Consensus 427 v~~~s~c~k-hs~~~ 440 (893)
T KOG0954|consen 427 VKFKSYCSK-HSDHR 440 (893)
T ss_pred hhheeeccc-ccccc
Confidence 34467875 65554
No 66
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=97.73 E-value=5.1e-05 Score=78.89 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=66.6
Q ss_pred eCCEEEEEEEEEEe-cC-ceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCcEEcCh
Q 001107 1032 RNEELVTVATVRIF-GE-KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRMTA 1109 (1156)
Q Consensus 1032 ~~~e~Vs~Arlri~-g~-~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~~~~~ 1109 (1156)
.+.++||-+++--. +. +.--+..|.|.+..||+|+|++||+..|.+++..|+.++.|...+| ..||+ ++||+..++
T Consensus 64 ~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ-~~FYe-~lGYe~c~P 141 (225)
T KOG3397|consen 64 ENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ-CRFYE-SLGYEKCDP 141 (225)
T ss_pred cccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc-hhhhh-hhcccccCc
Confidence 34688888887543 33 4446899999999999999999999999999999999999998866 68999 899998776
Q ss_pred HHHh
Q 001107 1110 SERV 1113 (1156)
Q Consensus 1110 ~~~~ 1113 (1156)
...-
T Consensus 142 i~~~ 145 (225)
T KOG3397|consen 142 IVHS 145 (225)
T ss_pred eecc
Confidence 6433
No 67
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.64 E-value=2.9e-05 Score=95.86 Aligned_cols=69 Identities=35% Similarity=0.991 Sum_probs=58.6
Q ss_pred CCCCccccCCCC--CCCCCCCCCccCCCC--------------------cccCCCCCCCCccccccCCceeecccccccc
Q 001107 850 RCPSSFHRNCVG--LEDVPDGDWFCPSCC--------------------CSICGNSNSREEVEDVVDGSVLICHQCELKY 907 (1156)
Q Consensus 850 ~Cp~afH~~CL~--l~~vP~g~W~Cp~C~--------------------C~iCg~~~~~~~~~~~~~g~ll~CdqCer~Y 907 (1156)
.|+++||..|+. +..-|+++|.|+.|. |.+|+.. |.++.|+.|..+|
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~~~-----------g~~l~c~tC~~s~ 69 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKDDDWDDAEQEACRICADG-----------GELLWCDTCPASF 69 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccccccccCCcchhhhhhhhhhcCC-----------CcEEEeccccHHH
Confidence 499999999998 566678999999885 6666644 5689999999999
Q ss_pred cccccccCCcchhccCCCCCcccCccc
Q 001107 908 HRKCLQNGATDKLKTHAKETWFCSKKC 934 (1156)
Q Consensus 908 H~~CL~~~~~~~L~e~p~~~WfC~~~C 934 (1156)
|..|+.++ +...|.+.|.|++ |
T Consensus 70 h~~cl~~p----l~~~p~~~~~c~R-c 91 (696)
T KOG0383|consen 70 HASCLGPP----LTPQPNGEFICPR-C 91 (696)
T ss_pred HHHccCCC----CCcCCccceeeee-e
Confidence 99999987 6778888899995 7
No 68
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.57 E-value=0.00027 Score=74.04 Aligned_cols=81 Identities=11% Similarity=0.188 Sum_probs=64.7
Q ss_pred EEEEEEeCCEEEEEEEEEEecC---ceEEEeEeeeecCccCCChhHHHHHHHHHHHHH-cCCcEEEecCch---hhHHHh
Q 001107 1026 YTVLLERNEELVTVATVRIFGE---KAAEIPLVGTRFQYRRLGMCRILMNELEKRLME-LGVEKLILPAIP---TVLKTW 1098 (1156)
Q Consensus 1026 y~~VL~~~~e~Vs~Arlri~g~---~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~-lgV~~LvL~A~~---~A~~fw 1098 (1156)
|.++...++++||.+.|..... ..++|. +.+.++|||||+|+.++.++.+.+.. +|+++|.+.... -+..+|
T Consensus 78 ~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ 156 (194)
T PRK10809 78 FALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLL 156 (194)
T ss_pred EEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHH
Confidence 3333344789999999876532 345666 46899999999999999999999876 799999887764 589999
Q ss_pred hccCCcEEcC
Q 001107 1099 TTSFGFKRMT 1108 (1156)
Q Consensus 1099 ~~klGF~~~~ 1108 (1156)
+ |+||+..+
T Consensus 157 e-k~Gf~~~g 165 (194)
T PRK10809 157 A-RLGFEKEG 165 (194)
T ss_pred H-HCCCcEEe
Confidence 9 99999755
No 69
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.56 E-value=2.4e-05 Score=65.79 Aligned_cols=42 Identities=43% Similarity=1.293 Sum_probs=34.6
Q ss_pred cccccCC---CCceeecCCCCCccccCCCCCC----CCCCCCCccCCCC
Q 001107 835 KCSVCHF---GGELLLCDRCPSSFHRNCVGLE----DVPDGDWFCPSCC 876 (1156)
Q Consensus 835 ~C~vC~d---gGeLl~CD~Cp~afH~~CL~l~----~vP~g~W~Cp~C~ 876 (1156)
+|.+|+. .+++|.|+.|.+.||..|+++. ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4788887 5669999999999999999944 4455699999885
No 70
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=97.56 E-value=0.00045 Score=72.78 Aligned_cols=132 Identities=17% Similarity=0.195 Sum_probs=92.2
Q ss_pred HHHHHhhcccccccCCccchhHHHHHhhhcccCCCCCccccEEEEEEeCCEEEEEEEEEEe--c-C--ceEEEeEeeeec
Q 001107 985 AHRVMHECFEPVHEPYSSGDLAEDVLFSRWSMLNRLNFQGFYTVLLERNEELVTVATVRIF--G-E--KAAEIPLVGTRF 1059 (1156)
Q Consensus 985 AL~vm~EcF~Pi~d~rtg~Dli~~~vy~~gs~~~r~df~Gfy~~VL~~~~e~Vs~Arlri~--g-~--~~AEIp~VAt~~ 1059 (1156)
-..+.++.|.+- ...++++...-+. .++ ---.+|-.++|++|+..++--. + . ...-+-.+||++
T Consensus 17 i~~~~~~aF~~~----~e~~~v~~lR~~~-----~~~--~~LslVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLaV~p 85 (171)
T COG3153 17 IEALTREAFGPG----REAKLVDKLREGG-----RPD--LTLSLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPLAVDP 85 (171)
T ss_pred HHHHHHHHhhcc----hHHHHHHHHHhcC-----Ccc--cceeEEEeeCCEEEEEEEEeEEEecCcccceEEEEeEEEch
Confidence 344667888843 2345555544432 121 1234566788999998877553 2 1 344588999999
Q ss_pred CccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCcEEcChHHHhccccceeeeeCCcceeecccCcc
Q 001107 1060 QYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRMTASERVQLVDYTFLNFPDTTMCLKLLQPS 1136 (1156)
Q Consensus 1060 ~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~~~~~~~~~~~~~~~~m~F~gt~~lqK~L~~~ 1136 (1156)
+|||||+|++||.+.++.|+..|...+++--. -.||. +|||.......+.. .. .+|.+.+|-+.|...
T Consensus 86 ~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGd---p~YY~-rfGF~~~~~~~l~~----p~-~~~~~~fl~~~L~~~ 153 (171)
T COG3153 86 EYQGQGIGSALVREGLEALRLAGASAVVVLGD---PTYYS-RFGFEPAAGAKLYA----PG-PVPDERFLALELGDG 153 (171)
T ss_pred hhcCCcHHHHHHHHHHHHHHHCCCCEEEEecC---ccccc-ccCcEEcccccccc----CC-CCCCceEEEEEccCC
Confidence 99999999999999999999999999998877 67886 99999965442221 11 156777777777654
No 71
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=97.49 E-value=0.00063 Score=70.29 Aligned_cols=81 Identities=14% Similarity=0.139 Sum_probs=65.0
Q ss_pred EEEEeCCEEEEEEEEEEec--CceEEEeEeeeecCccCCChhHHHHHHHHHHHH-HcCCcEEEecCc---hhhHHHhhcc
Q 001107 1028 VLLERNEELVTVATVRIFG--EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLM-ELGVEKLILPAI---PTVLKTWTTS 1101 (1156)
Q Consensus 1028 ~VL~~~~e~Vs~Arlri~g--~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~-~lgV~~LvL~A~---~~A~~fw~~k 1101 (1156)
+++..+|++||.+.+.... ...++|.. .+.++|||||+|+.++.++.+.+. .+|+++|.+.+. ..+..+++ |
T Consensus 70 ~~i~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~e-k 147 (179)
T PRK10151 70 FMIFKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVAL-R 147 (179)
T ss_pred EEEEECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHH-H
Confidence 4445689999999987653 35688986 589999999999999998888776 578999887644 44889999 9
Q ss_pred CCcEEcChH
Q 001107 1102 FGFKRMTAS 1110 (1156)
Q Consensus 1102 lGF~~~~~~ 1110 (1156)
+||+..+..
T Consensus 148 ~Gf~~~g~~ 156 (179)
T PRK10151 148 NGFTLEGCL 156 (179)
T ss_pred CCCEEEeEe
Confidence 999986643
No 72
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.43 E-value=0.00081 Score=65.76 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=63.5
Q ss_pred ccEEEEEEe--CCEEEEEEEEEEe--cCceEEEeEeeeecCccCCChhHHHHHHHHHHH-HHcCCcEEEecCch---hhH
Q 001107 1024 GFYTVLLER--NEELVTVATVRIF--GEKAAEIPLVGTRFQYRRLGMCRILMNELEKRL-MELGVEKLILPAIP---TVL 1095 (1156)
Q Consensus 1024 Gfy~~VL~~--~~e~Vs~Arlri~--g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l-~~lgV~~LvL~A~~---~A~ 1095 (1156)
|++.+++.. ++++||...++.. ....+||. +.+.++|||+|+|+.++..+...+ ..+|+.++.+.... .+.
T Consensus 55 ~~~~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~ 133 (142)
T PF13302_consen 55 GYYYFAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASR 133 (142)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHH
T ss_pred cceEEEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHH
Confidence 355555554 3579999999544 47889999 669999999999999999999998 79999998876654 477
Q ss_pred HHhhccCCcE
Q 001107 1096 KTWTTSFGFK 1105 (1156)
Q Consensus 1096 ~fw~~klGF~ 1105 (1156)
.+++ |+||+
T Consensus 134 ~~~~-k~GF~ 142 (142)
T PF13302_consen 134 RLLE-KLGFE 142 (142)
T ss_dssp HHHH-HTT-E
T ss_pred HHHH-HcCCC
Confidence 8888 89995
No 73
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.39 E-value=5.3e-05 Score=95.03 Aligned_cols=103 Identities=28% Similarity=0.490 Sum_probs=72.3
Q ss_pred CCcccccccCCCCceeecCCCCCccccCCCC--CCCCCCCCCccCCCC-cccCCC-----CCC---------CCccc---
Q 001107 831 ENDYKCSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCC-CSICGN-----SNS---------REEVE--- 890 (1156)
Q Consensus 831 ~ndd~C~vC~dgGeLl~CD~Cp~afH~~CL~--l~~vP~g~W~Cp~C~-C~iCg~-----~~~---------~~~~~--- 890 (1156)
+-++.|.+|++.|+++||..||+.||..|+. +..+|...|.|.-|. |++=|- +.. ..+.+
T Consensus 342 ~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~~iG~dr~g 421 (1414)
T KOG1473|consen 342 EYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSIRHTPIGRDRYG 421 (1414)
T ss_pred eecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccceeccCCCcCccc
Confidence 3467799999999999999999999999997 668899999999876 211110 000 00000
Q ss_pred ---cc---------cCCceeeccc-ccccccc-cccccCCcchhccCCCCCcccCccchh
Q 001107 891 ---DV---------VDGSVLICHQ-CELKYHR-KCLQNGATDKLKTHAKETWFCSKKCEE 936 (1156)
Q Consensus 891 ---~~---------~~g~ll~Cdq-Cer~YH~-~CL~~~~~~~L~e~p~~~WfC~~~C~~ 936 (1156)
.| -++.++-|+. |+..||. .|++.... -..++.+-|+|.. |-.
T Consensus 422 r~ywfi~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~--e~~L~d~i~~~~e-e~~ 478 (1414)
T KOG1473|consen 422 RKYWFISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYV--EMYLCDGIWERRE-EII 478 (1414)
T ss_pred cchhceeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHH--HHhhccchhhhHH-HHH
Confidence 01 1456777776 9999999 99984322 2467889999985 543
No 75
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.39 E-value=5.9e-05 Score=84.85 Aligned_cols=44 Identities=41% Similarity=1.004 Sum_probs=38.1
Q ss_pred cccccc-cCCCCceeecCC--CC-CccccCCCCCCCCCCCCCccCCCC
Q 001107 833 DYKCSV-CHFGGELLLCDR--CP-SSFHRNCVGLEDVPDGDWFCPSCC 876 (1156)
Q Consensus 833 dd~C~v-C~dgGeLl~CD~--Cp-~afH~~CL~l~~vP~g~W~Cp~C~ 876 (1156)
..+|.. |...|+|+-||. |+ .-||..|++|...|.|.|||+.|+
T Consensus 219 ~~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~ 266 (274)
T KOG1973|consen 219 PTYCICNQVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCK 266 (274)
T ss_pred CEEEEecccccccccccCCCCCCcceEEEeccccccCCCCcccchhhh
Confidence 344432 667899999999 99 899999999999999999999886
No 76
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=97.37 E-value=0.0021 Score=66.29 Aligned_cols=135 Identities=16% Similarity=0.187 Sum_probs=98.2
Q ss_pred hhhhhhhhhhHHHHHhhcccccccCCccchhHHHHHhhhcccCCCCCccccEEEEEEe-CCEEEEEEEEEEe-----cCc
Q 001107 975 DIQTLSKLNIAHRVMHECFEPVHEPYSSGDLAEDVLFSRWSMLNRLNFQGFYTVLLER-NEELVTVATVRIF-----GEK 1048 (1156)
Q Consensus 975 die~~SkLa~AL~vm~EcF~Pi~d~rtg~Dli~~~vy~~gs~~~r~df~Gfy~~VL~~-~~e~Vs~Arlri~-----g~~ 1048 (1156)
|.+.+-+|=.-|..++.+-+|..-+. .+|-.+ -|....|.-.+.+.++. +++|+|-|-+..+ +.+
T Consensus 13 D~~~i~rLikela~Fek~~~~v~~te--~~l~~~-------~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~ 83 (163)
T KOG3216|consen 13 DCEDILRLIKELAEFEKLEDQVEATE--ENLARD-------GFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQ 83 (163)
T ss_pred cHHHHHHHHHHHHHHHHhccchhhch--hhhhhh-------hccCCCccEEEEEEEecCCCceeEEeeeecccccccccc
Confidence 33444467777888888888776433 334221 13444554445555555 7789998887764 335
Q ss_pred eEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEE---EecCchhhHHHhhccCCcEEcChHHHhccccceeeeeCC
Q 001107 1049 AAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKL---ILPAIPTVLKTWTTSFGFKRMTASERVQLVDYTFLNFPD 1125 (1156)
Q Consensus 1049 ~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~L---vL~A~~~A~~fw~~klGF~~~~~~~~~~~~~~~~m~F~g 1125 (1156)
.-.|.=+=|+++|||+|+|+.|+..+-+.|..+|..++ |+.--..|+.||+ +.||+.... ..++.+.|
T Consensus 84 ~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~-k~gaq~l~~--------W~l~r~~G 154 (163)
T KOG3216|consen 84 GIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYE-KVGAQDLKE--------WRLFRRTG 154 (163)
T ss_pred eEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHH-HhCccccce--------eEEEEech
Confidence 56788899999999999999999999999999999874 6677788999999 899998554 66777766
Q ss_pred cc
Q 001107 1126 TT 1127 (1156)
Q Consensus 1126 t~ 1127 (1156)
-.
T Consensus 155 ~a 156 (163)
T KOG3216|consen 155 EA 156 (163)
T ss_pred HH
Confidence 54
No 77
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.35 E-value=0.00093 Score=71.87 Aligned_cols=85 Identities=26% Similarity=0.371 Sum_probs=61.0
Q ss_pred cccEEEEEEeCC--EEEEEEEEEEecC-------------------------------------ceEEEeEeeeecCccC
Q 001107 1023 QGFYTVLLERNE--ELVTVATVRIFGE-------------------------------------KAAEIPLVGTRFQYRR 1063 (1156)
Q Consensus 1023 ~Gfy~~VL~~~~--e~Vs~Arlri~g~-------------------------------------~~AEIp~VAt~~~yRg 1063 (1156)
-++..+++..++ +++||+-+-.-|. ..+.|-||||.|++|+
T Consensus 25 P~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~q~ 104 (196)
T PF13718_consen 25 PNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDLQR 104 (196)
T ss_dssp TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC-S
T ss_pred CcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhhhc
Confidence 356778888888 9999998865443 1357999999999999
Q ss_pred CChhHHHHHHHHHHH-------------------------HHcCCcEEE--ecCchhhHHHhhccCCcEEcC
Q 001107 1064 LGMCRILMNELEKRL-------------------------MELGVEKLI--LPAIPTVLKTWTTSFGFKRMT 1108 (1156)
Q Consensus 1064 qG~Gr~Lm~aIE~~l-------------------------~~lgV~~Lv--L~A~~~A~~fw~~klGF~~~~ 1108 (1156)
+|||++|++.+++.+ +..++..|= ..+.++...||. |.||.++-
T Consensus 105 ~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~-k~gf~pv~ 175 (196)
T PF13718_consen 105 MGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQ-KNGFVPVY 175 (196)
T ss_dssp SSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHH-CTT-EEEE
T ss_pred CCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHH-HCCcEEEE
Confidence 999999999999999 466777654 457788999999 89999865
No 78
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.20 E-value=0.00011 Score=91.05 Aligned_cols=50 Identities=46% Similarity=1.218 Sum_probs=44.0
Q ss_pred cCCCcccccccCCCCceeecCCCCCccccCCCC--CCCCCCCCCccCCCCcc
Q 001107 829 QGENDYKCSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCCCS 878 (1156)
Q Consensus 829 ~~~ndd~C~vC~dgGeLl~CD~Cp~afH~~CL~--l~~vP~g~W~Cp~C~C~ 878 (1156)
++.+...|.+|.++|++++||.|+.+||.+|++ +...|.++|.|+.|.|.
T Consensus 43 ~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 43 DDAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred chhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence 345667899999999999999999999999998 67888899999988753
No 79
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.19 E-value=0.00012 Score=89.19 Aligned_cols=49 Identities=29% Similarity=0.837 Sum_probs=40.4
Q ss_pred CCcccCCCCCCCCccccccCCceeeccccccc-ccccccccCCcchhccCCCCCcccCccchh
Q 001107 875 CCCSICGNSNSREEVEDVVDGSVLICHQCELK-YHRKCLQNGATDKLKTHAKETWFCSKKCEE 936 (1156)
Q Consensus 875 C~C~iCg~~~~~~~~~~~~~g~ll~CdqCer~-YH~~CL~~~~~~~L~e~p~~~WfC~~~C~~ 936 (1156)
|.|.+|+.++-+ ..|++|+.|... ||.+||++. |.++|-+.|||.. |..
T Consensus 216 ~~C~IC~~~DpE--------dVLLLCDsCN~~~YH~YCLDPd----l~eiP~~eWYC~N-C~d 265 (1134)
T KOG0825|consen 216 VKCDICTVHDPE--------DVLLLCDSCNKVYYHVYCLDPD----LSESPVNEWYCTN-CSL 265 (1134)
T ss_pred ccceeeccCChH--------HhheeecccccceeeccccCcc----cccccccceecCc-chh
Confidence 348888776532 459999999998 999999987 8899999999985 753
No 80
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.16 E-value=0.00016 Score=60.71 Aligned_cols=48 Identities=29% Similarity=0.974 Sum_probs=35.4
Q ss_pred cccCCCCCCCCccccccCCceeecccccccccccccccCCcchhccCCCCCcccCccch
Q 001107 877 CSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCE 935 (1156)
Q Consensus 877 C~iCg~~~~~~~~~~~~~g~ll~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfC~~~C~ 935 (1156)
|.+|++... .+.++.|+.|.++||..|+++.... .+.+...|+|+. |.
T Consensus 2 C~vC~~~~~--------~~~~i~C~~C~~~~H~~C~~~~~~~--~~~~~~~w~C~~-C~ 49 (51)
T PF00628_consen 2 CPVCGQSDD--------DGDMIQCDSCNRWYHQECVGPPEKA--EEIPSGDWYCPN-CR 49 (51)
T ss_dssp BTTTTSSCT--------TSSEEEBSTTSCEEETTTSTSSHSH--HSHHSSSBSSHH-HH
T ss_pred CcCCCCcCC--------CCCeEEcCCCChhhCcccCCCChhh--ccCCCCcEECcC-Cc
Confidence 677887332 3569999999999999999987432 233445999985 64
No 81
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.98 E-value=0.0003 Score=77.09 Aligned_cols=44 Identities=41% Similarity=1.163 Sum_probs=37.5
Q ss_pred CcccccccCC--CCceeecCC--CCC-ccccCCCCCCCCCCCCCccCCCC
Q 001107 832 NDYKCSVCHF--GGELLLCDR--CPS-SFHRNCVGLEDVPDGDWFCPSCC 876 (1156)
Q Consensus 832 ndd~C~vC~d--gGeLl~CD~--Cp~-afH~~CL~l~~vP~g~W~Cp~C~ 876 (1156)
+.-||+ |.+ -|+|+-||. |.+ -||..|++|...|.|.|||+.|+
T Consensus 220 e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk 268 (271)
T COG5034 220 EELYCF-CQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECK 268 (271)
T ss_pred ceeEEE-ecccccccceecCCCCCchhheeccccccCCCCCCcEeCHHhH
Confidence 344664 655 589999998 987 89999999999999999999986
No 82
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.95 E-value=0.0053 Score=64.75 Aligned_cols=109 Identities=20% Similarity=0.265 Sum_probs=80.1
Q ss_pred cccEEEEEEeC-CEEEEEEEEEEecC-----ceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEe---cCchh
Q 001107 1023 QGFYTVLLERN-EELVTVATVRIFGE-----KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLIL---PAIPT 1093 (1156)
Q Consensus 1023 ~Gfy~~VL~~~-~e~Vs~Arlri~g~-----~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL---~A~~~ 1093 (1156)
.||+.+|++.+ |++++=|.+-.+.+ .++| -.|=+++++||+|+|++|+.++...+..+|+..++- ++-.-
T Consensus 50 ~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve-~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~a 128 (169)
T COG1247 50 DGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVE-LSIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLA 128 (169)
T ss_pred CCceEEEEEcCCCeEEEEEEeeeccCccccceEEE-EEEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcH
Confidence 56888888766 89999888877654 3333 356689999999999999999999999999988754 22233
Q ss_pred hHHHhhccCCcEEcChHHHhccccceeeeeCCcceeecccCcc
Q 001107 1094 VLKTWTTSFGFKRMTASERVQLVDYTFLNFPDTTMCLKLLQPS 1136 (1156)
Q Consensus 1094 A~~fw~~klGF~~~~~~~~~~~~~~~~m~F~gt~~lqK~L~~~ 1136 (1156)
.+.+-+ +|||...+..... ....=.+-.+.++|+.|...
T Consensus 129 Si~lh~-~~GF~~~G~~~~v---g~k~g~wld~~~~~~~l~~~ 167 (169)
T COG1247 129 SIALHE-KLGFEEVGTFPEV---GDKFGRWLDLVLMQLLLEEG 167 (169)
T ss_pred hHHHHH-HCCCEEecccccc---ccccceEEeeeeeehhhccc
Confidence 456666 8999998854333 22233456678888887653
No 83
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=96.60 E-value=0.0055 Score=52.39 Aligned_cols=54 Identities=26% Similarity=0.409 Sum_probs=43.0
Q ss_pred CCCCCCEEEEEeCCCCccceEEEEEEEEecCCCce-EEeCCcccCCCCCCceEEEEccccccCCccccccccCCCCcccC
Q 001107 21 KLPVGERVEVRSDEDGFLGSWHAGTVIASSSDCRT-VKYDHLLTDAGDDNLVDIVCVSSIINSSTFADVTQSHSRGHIRP 99 (1156)
Q Consensus 21 ~fkvGd~VEV~s~eeG~~GsWF~AtVi~~~~~~~~-V~Y~dl~dddg~~~L~E~V~~s~~~~g~~~~~~~r~~~r~~IRP 99 (1156)
.|++|+.|.+.. + .|.||+|+|+++.++..+ |.|.|+- -.|+|+. ..|||
T Consensus 2 ~~~~G~~~~a~~-~---d~~wyra~I~~~~~~~~~~V~f~D~G-------~~~~v~~------------------~~l~~ 52 (57)
T smart00333 2 TFKVGDKVAARW-E---DGEWYRARIIKVDGEQLYEVFFIDYG-------NEEVVPP------------------SDLRP 52 (57)
T ss_pred CCCCCCEEEEEe-C---CCCEEEEEEEEECCCCEEEEEEECCC-------ccEEEeH------------------HHeec
Confidence 589999999996 3 678999999999985444 9999883 2478886 35899
Q ss_pred CCCC
Q 001107 100 LPPP 103 (1156)
Q Consensus 100 ~PP~ 103 (1156)
.|+.
T Consensus 53 l~~~ 56 (57)
T smart00333 53 LPEE 56 (57)
T ss_pred CCCC
Confidence 8874
No 85
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=96.59 E-value=0.0013 Score=68.58 Aligned_cols=82 Identities=29% Similarity=0.738 Sum_probs=58.3
Q ss_pred cccccCC------CCceeecCCCCCccccCCCCC--------CCCCCCCC--ccCCCC---------------cccCCCC
Q 001107 835 KCSVCHF------GGELLLCDRCPSSFHRNCVGL--------EDVPDGDW--FCPSCC---------------CSICGNS 883 (1156)
Q Consensus 835 ~C~vC~d------gGeLl~CD~Cp~afH~~CL~l--------~~vP~g~W--~Cp~C~---------------C~iCg~~ 883 (1156)
.|.+|+. -|.||.|-+|-.+||..||+. +.|-.+.+ .|.+|. |..|+..
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~ 80 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKP 80 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCC
Confidence 3778854 245999999999999999982 24444443 688886 7788775
Q ss_pred CCCC-----------------cccc-------------ccCCceeecccccccccccccccCC
Q 001107 884 NSRE-----------------EVED-------------VVDGSVLICHQCELKYHRKCLQNGA 916 (1156)
Q Consensus 884 ~~~~-----------------~~~~-------------~~~g~ll~CdqCer~YH~~CL~~~~ 916 (1156)
+..- +..+ -.++.|+.|..|.++||...|.+..
T Consensus 81 G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 81 GPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred CCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence 4311 0000 1256789999999999999998754
No 86
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.56 E-value=0.001 Score=75.01 Aligned_cols=36 Identities=33% Similarity=0.826 Sum_probs=31.1
Q ss_pred Cceeeccc--cc-ccccccccccCCcchhccCCCCCcccCccchh
Q 001107 895 GSVLICHQ--CE-LKYHRKCLQNGATDKLKTHAKETWFCSKKCEE 936 (1156)
Q Consensus 895 g~ll~Cdq--Ce-r~YH~~CL~~~~~~~L~e~p~~~WfC~~~C~~ 936 (1156)
|.|+.||. |+ .|||..|.. |...|.+.|||++|+..
T Consensus 230 g~Mi~CDn~~C~~eWFH~~CVG------L~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 230 GKMIGCDNPGCPIEWFHFTCVG------LKTKPKGKWYCPRCKAE 268 (274)
T ss_pred ccccccCCCCCCcceEEEeccc------cccCCCCcccchhhhhh
Confidence 67999998 99 999999997 66789999999975443
No 87
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.44 E-value=0.017 Score=65.12 Aligned_cols=77 Identities=17% Similarity=0.145 Sum_probs=56.0
Q ss_pred EEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCcEEc
Q 001107 1029 LLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRM 1107 (1156)
Q Consensus 1029 VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~~~ 1107 (1156)
++..+|++||.|.=.....+.+||. |+|.++|||||+++++..++-..+.+.|+....=-+-...+..=+ ||||+..
T Consensus 169 ~i~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~N~~S~~lA~-kLGf~~~ 245 (265)
T PF12746_consen 169 CILHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCHNLASIALAE-KLGFHFD 245 (265)
T ss_dssp EEEETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EESSHHHHHHHH-HCT--EE
T ss_pred EEEECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCCCHHHHHHHH-HcCCccc
Confidence 4456899999887777778888987 789999999999999999999988888888765544333334444 8999863
No 88
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.33 E-value=0.0084 Score=75.33 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=49.0
Q ss_pred EEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEE--ecCchhhHHHhhccCCcEEcC
Q 001107 1050 AEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLI--LPAIPTVLKTWTTSFGFKRMT 1108 (1156)
Q Consensus 1050 AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~Lv--L~A~~~A~~fw~~klGF~~~~ 1108 (1156)
+.|-||||+|++|++|+|++|++.++++++ .|+..|- ..+.++...||. +.||.++-
T Consensus 532 ~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~-rnGF~pVh 590 (758)
T COG1444 532 WRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWL-RNGFVPVH 590 (758)
T ss_pred eeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHH-HcCeEEEE
Confidence 468999999999999999999999999996 3555444 457789999999 89999865
No 89
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=96.14 E-value=0.0036 Score=64.52 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=51.3
Q ss_pred eEEEeEeeeecCccCCChhHHHHHH-HHHHHHHcCCcEEEecCchhhHHHhhccCCcEEcCh
Q 001107 1049 AAEIPLVGTRFQYRRLGMCRILMNE-LEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRMTA 1109 (1156)
Q Consensus 1049 ~AEIp~VAt~~~yRgqG~Gr~Lm~a-IE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~~~~~ 1109 (1156)
.+.|-.+|+.++||.||++..|+.. |..+...--+.+++|=+-.-.++||+ +|||+.+++
T Consensus 101 ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYE-r~gFk~vgp 161 (190)
T KOG4144|consen 101 NIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYE-RFGFKAVGP 161 (190)
T ss_pred ceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhH-hcCceeecc
Confidence 3788899999999999999999876 55555555567889999999999999 899999987
No 90
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=96.04 E-value=0.029 Score=51.91 Aligned_cols=58 Identities=17% Similarity=0.136 Sum_probs=49.5
Q ss_pred EEEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEE
Q 001107 1028 VLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKL 1086 (1156)
Q Consensus 1028 ~VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~L 1086 (1156)
+.+..+|+.+|....+. ..+...|-..-|.+++||||+|+.||+++-+.+++.|.+-.
T Consensus 2 F~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~ 59 (78)
T PF14542_consen 2 FELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVV 59 (78)
T ss_dssp EEEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEE
T ss_pred EEEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEE
Confidence 34667788999999986 77888999999999999999999999999999999887754
No 91
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=96.03 E-value=0.0053 Score=65.67 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=53.9
Q ss_pred eEEEeEeeeecCccCCChhHHHHHHHHHHHHHcC-CcEEEecCc---hhhHHHhhccCCcEEcCh
Q 001107 1049 AAEIPLVGTRFQYRRLGMCRILMNELEKRLMELG-VEKLILPAI---PTVLKTWTTSFGFKRMTA 1109 (1156)
Q Consensus 1049 ~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lg-V~~LvL~A~---~~A~~fw~~klGF~~~~~ 1109 (1156)
+..|-.++|++.||..|+|..|++.+.+.+...+ +.++.|+++ ..|+.||+ ++||+.+..
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~-~~gF~~~~~ 152 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYE-KRGFEIVER 152 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHH-hcCceEeec
Confidence 5779999999999999999999999999999999 777888777 56999999 899999764
No 92
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=96.02 E-value=0.0075 Score=52.40 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=40.3
Q ss_pred eeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCc
Q 001107 1055 VGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGF 1104 (1156)
Q Consensus 1055 VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF 1104 (1156)
++|.++|||+|+|+.|++++++.++..|+. ....+..+|. ++||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~-~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYE-KNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHH-hcCC
Confidence 999999999999999999999999998887 5667889999 7888
No 93
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=95.87 E-value=0.013 Score=55.86 Aligned_cols=75 Identities=23% Similarity=0.238 Sum_probs=58.0
Q ss_pred EEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcE--EEecCchhhHHHhhccCCcEE
Q 001107 1029 LLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEK--LILPAIPTVLKTWTTSFGFKR 1106 (1156)
Q Consensus 1029 VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~--LvL~A~~~A~~fw~~klGF~~ 1106 (1156)
||-.+|.|||=. .-+..+||+.-.|.|+|||||+.+.++....+.|.++|+.- -|..+-..++..-. +|||..
T Consensus 3 llgpeG~PVSW~----lmdqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~-~lg~~~ 77 (89)
T PF08444_consen 3 LLGPEGNPVSWS----LMDQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSK-SLGFIF 77 (89)
T ss_pred ccCCCCCEeEEE----EecccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHH-HCCCee
Confidence 345678898854 34677899999999999999999999999999999999984 22223344555555 688887
Q ss_pred cC
Q 001107 1107 MT 1108 (1156)
Q Consensus 1107 ~~ 1108 (1156)
++
T Consensus 78 ~p 79 (89)
T PF08444_consen 78 MP 79 (89)
T ss_pred cC
Confidence 65
No 94
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.76 E-value=0.006 Score=62.88 Aligned_cols=31 Identities=45% Similarity=1.096 Sum_probs=26.5
Q ss_pred ccccCCCC--CCCCCCCCCccCCCCcccCCCCC
Q 001107 854 SFHRNCVG--LEDVPDGDWFCPSCCCSICGNSN 884 (1156)
Q Consensus 854 afH~~CL~--l~~vP~g~W~Cp~C~C~iCg~~~ 884 (1156)
+||++||. |..+|+|+|+||.|.....++..
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~~ 33 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQSA 33 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCCCcc
Confidence 59999998 88999999999999977665543
No 95
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=95.71 E-value=0.057 Score=54.58 Aligned_cols=87 Identities=20% Similarity=0.278 Sum_probs=68.0
Q ss_pred cccEEEEEEeCC--EEEEEEEEEEec----CceEEEeEeeeecCccCCChhHHHHHHHHHHHHH-cCCcEEEecCchh--
Q 001107 1023 QGFYTVLLERNE--ELVTVATVRIFG----EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLME-LGVEKLILPAIPT-- 1093 (1156)
Q Consensus 1023 ~Gfy~~VL~~~~--e~Vs~Arlri~g----~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~-lgV~~LvL~A~~~-- 1093 (1156)
.+.|.+....++ ++||.+.+.... .+.+++...- .++|+|||++...+.++-..+-+ +|++++++-....
T Consensus 64 ~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~ 142 (187)
T COG1670 64 GGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENE 142 (187)
T ss_pred CceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCH
Confidence 355666666555 999999998654 5677887776 99999999999999888888665 9999988766543
Q ss_pred -hHHHhhccCCcEEcChHH
Q 001107 1094 -VLKTWTTSFGFKRMTASE 1111 (1156)
Q Consensus 1094 -A~~fw~~klGF~~~~~~~ 1111 (1156)
+...++ |+||+..+...
T Consensus 143 ~S~rv~e-k~Gf~~eg~~~ 160 (187)
T COG1670 143 ASIRVYE-KLGFRLEGELR 160 (187)
T ss_pred HHHHHHH-HcCChhhhhhh
Confidence 678888 99999877443
No 96
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=95.65 E-value=0.029 Score=47.90 Aligned_cols=51 Identities=24% Similarity=0.435 Sum_probs=45.8
Q ss_pred CCCCCCEEEEEe-CCCeEEEEEEEecCCCceEEEEeCCCCCeEEEecCCcccc
Q 001107 110 SLPFGLCVDVYY-NEAWWEGVIFDLEDGSAERRIFFPDLGDEMTVGIDSLRIT 161 (1156)
Q Consensus 110 ~~~vGd~VDa~~-~dgWWeGvV~~v~~g~~~~~V~Fpgegde~~~~~~dLRp~ 161 (1156)
.|++|+.|-|.+ ++.|..|+|+++.+. ..+.|+|.+-|....++.++||+-
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~~~~l~~l 53 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVPPSDLRPL 53 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCC-CEEEEEEECCCccEEEeHHHeecC
Confidence 588999999998 999999999999764 579999999999999999999874
No 97
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=95.63 E-value=0.04 Score=58.89 Aligned_cols=82 Identities=21% Similarity=0.266 Sum_probs=62.1
Q ss_pred EEEEEEeCCEEEEEEEEEEe---cCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEE---ecCchhhHHHhh
Q 001107 1026 YTVLLERNEELVTVATVRIF---GEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLI---LPAIPTVLKTWT 1099 (1156)
Q Consensus 1026 y~~VL~~~~e~Vs~Arlri~---g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~Lv---L~A~~~A~~fw~ 1099 (1156)
|-+..+..+++||-+.+|+- |..++-.==|=+.++|||+|+|+.|++.+|..+...+.+.++ ..+-.-|.+||.
T Consensus 94 Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy~ 173 (202)
T KOG2488|consen 94 YICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFYH 173 (202)
T ss_pred EEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHHH
Confidence 44444444589999999974 333443444456689999999999999999999988877554 466677999999
Q ss_pred ccCCcEEcC
Q 001107 1100 TSFGFKRMT 1108 (1156)
Q Consensus 1100 ~klGF~~~~ 1108 (1156)
++||-+.+
T Consensus 174 -~~gf~~~~ 181 (202)
T KOG2488|consen 174 -RLGFVVDE 181 (202)
T ss_pred -HcCcccCC
Confidence 89997754
No 98
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=95.47 E-value=0.0065 Score=71.63 Aligned_cols=43 Identities=42% Similarity=1.080 Sum_probs=34.7
Q ss_pred ccccccCC-----CCceeecCCCCCccccCCCC-C--CCCCC-------CCCccCCCC
Q 001107 834 YKCSVCHF-----GGELLLCDRCPSSFHRNCVG-L--EDVPD-------GDWFCPSCC 876 (1156)
Q Consensus 834 d~C~vC~d-----gGeLl~CD~Cp~afH~~CL~-l--~~vP~-------g~W~Cp~C~ 876 (1156)
.+|.||.+ .|+++-||.|....|..|++ + ..+|. ..|||.-|+
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~ 177 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACL 177 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHh
Confidence 48999974 57899999999999999998 3 23343 359999997
No 99
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=95.44 E-value=0.049 Score=61.55 Aligned_cols=80 Identities=24% Similarity=0.382 Sum_probs=69.8
Q ss_pred EEEEEEeC-CEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCc
Q 001107 1026 YTVLLERN-EELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGF 1104 (1156)
Q Consensus 1026 y~~VL~~~-~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF 1104 (1156)
|+++.+.+ +++|+|+.+- |. -|.-|||++.+||.|+.-.|+..+-.++-++|..+|++-.-++-..++. .+||
T Consensus 37 ~~v~~~~~~~~iiacGsia--Gn---vikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk-~~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSIA--GN---VIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFK-QCGF 110 (352)
T ss_pred EEEEEEcCCCcEEEecccc--cc---eeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHH-hCCc
Confidence 55566655 9999999863 33 3899999999999999999999999999999999999999999999999 7999
Q ss_pred EEcChHH
Q 001107 1105 KRMTASE 1111 (1156)
Q Consensus 1105 ~~~~~~~ 1111 (1156)
..+...+
T Consensus 111 ~~i~~~~ 117 (352)
T COG3053 111 SEIASAE 117 (352)
T ss_pred eEeeccC
Confidence 9877543
No 100
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=95.41 E-value=0.11 Score=52.25 Aligned_cols=92 Identities=26% Similarity=0.307 Sum_probs=63.4
Q ss_pred CCEEEEEeCCCCccceEEEEEEEEecCCCce-EEeCCcccCCCCCCceEEEEccccccCCccccccccCCCCcccCCCCC
Q 001107 25 GERVEVRSDEDGFLGSWHAGTVIASSSDCRT-VKYDHLLTDAGDDNLVDIVCVSSIINSSTFADVTQSHSRGHIRPLPPP 103 (1156)
Q Consensus 25 Gd~VEV~s~eeG~~GsWF~AtVi~~~~~~~~-V~Y~dl~dddg~~~L~E~V~~s~~~~g~~~~~~~r~~~r~~IRP~PP~ 103 (1156)
|+.|=.+++++|| ||+|||++......+ |++.+- ..+.|+... |-+.-+.
T Consensus 1 g~~VlAR~~~DG~---YY~GtV~~~~~~~~~lV~f~~~--------~~~~v~~~~------------------iI~~~~~ 51 (124)
T PF15057_consen 1 GQKVLARREEDGF---YYPGTVKKCVSSGQFLVEFDDG--------DTQEVPISD------------------IIALSDA 51 (124)
T ss_pred CCeEEEeeCCCCc---EEeEEEEEccCCCEEEEEECCC--------CEEEeChHH------------------eEEccCc
Confidence 7889999999998 899999998766666 998222 345665532 2222221
Q ss_pred CCCCCCCCCCCCEEEEEe---CCCeEEEEEEEe----cCCCceEEEEeCCCC
Q 001107 104 VKFGKCSLPFGLCVDVYY---NEAWWEGVIFDL----EDGSAERRIFFPDLG 148 (1156)
Q Consensus 104 ~~~~~~~~~vGd~VDa~~---~dgWWeGvV~~v----~~g~~~~~V~Fpgeg 148 (1156)
. ...+++||.|=|-+ +..|=.|+|+.. ...++.|+|.|-+..
T Consensus 52 ~---~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f~ng~ 100 (124)
T PF15057_consen 52 M---RHSLQVGDKVLAPWEPDDCRYGPGTVIAGPERRASEDKEYTVRFYNGK 100 (124)
T ss_pred c---cCcCCCCCEEEEecCcCCCEEeCEEEEECccccccCCceEEEEEECCC
Confidence 1 23577899998877 457888999863 223357999998643
No 101
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=95.21 E-value=0.0068 Score=71.49 Aligned_cols=58 Identities=31% Similarity=0.666 Sum_probs=42.2
Q ss_pred CcccCCCCCCCCccccccCCceeecccccccccccccccCCcchhccCC----CCCcccCccc--hhhHhhhhhhcC
Q 001107 876 CCSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNGATDKLKTHA----KETWFCSKKC--EEIFLGLQRLLG 946 (1156)
Q Consensus 876 ~C~iCg~~~~~~~~~~~~~g~ll~CdqCer~YH~~CL~~~~~~~L~e~p----~~~WfC~~~C--~~i~~~L~~llg 946 (1156)
.|++|.++..+ ..++.||.|...||.+||.++ |..+| ...|.|++ | .+-....+++..
T Consensus 546 sCgiCkks~dQ--------Hll~~CDtC~lhYHlGCL~PP----LTR~Pkk~kn~gWqCsE-Cdk~esSD~e~ei~~ 609 (707)
T KOG0957|consen 546 SCGICKKSTDQ--------HLLTQCDTCHLHYHLGCLSPP----LTRLPKKNKNFGWQCSE-CDKNESSDSEQEIIP 609 (707)
T ss_pred eeeeeccchhh--------HHHhhcchhhceeeccccCCc----cccCcccccCcceeecc-cccccCcchhhhhcc
Confidence 38889887643 458999999999999999998 44444 45699996 7 334444555543
No 102
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=95.17 E-value=0.0091 Score=65.81 Aligned_cols=35 Identities=31% Similarity=1.008 Sum_probs=30.2
Q ss_pred Cceeeccc--cc-ccccccccccCCcchhccCCCCCcccCccchh
Q 001107 895 GSVLICHQ--CE-LKYHRKCLQNGATDKLKTHAKETWFCSKKCEE 936 (1156)
Q Consensus 895 g~ll~Cdq--Ce-r~YH~~CL~~~~~~~L~e~p~~~WfC~~~C~~ 936 (1156)
|.|+.||. |+ .|||..|.+ |.+.|+|.|||+ .|++
T Consensus 232 GqMVaCDn~nCkrEWFH~~CVG------Lk~pPKG~WYC~-eCk~ 269 (271)
T COG5034 232 GQMVACDNANCKREWFHLECVG------LKEPPKGKWYCP-ECKK 269 (271)
T ss_pred ccceecCCCCCchhheeccccc------cCCCCCCcEeCH-HhHh
Confidence 67999996 87 679999997 788999999996 5876
No 103
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=95.12 E-value=0.13 Score=52.06 Aligned_cols=78 Identities=23% Similarity=0.272 Sum_probs=54.4
Q ss_pred EEEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCch------hh-HHHhhc
Q 001107 1028 VLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIP------TV-LKTWTT 1100 (1156)
Q Consensus 1028 ~VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~------~A-~~fw~~ 1100 (1156)
+...-|+.++|++.+.+.+. .++|-.++|++.=||.|+|..|++.+.+.+. +|....+.+.. .+ ..|-.
T Consensus 41 ~aArFNdRlLgAv~v~~~~~-~~~L~~l~VRevTRrRGVG~yLlee~~rq~p--~i~~w~l~~~~~~~~~~~~~~~Fm~- 116 (128)
T PF12568_consen 41 FAARFNDRLLGAVKVTISGQ-QAELSDLCVREVTRRRGVGLYLLEEVLRQLP--DIKHWWLADEGVEPQDRAVMAAFMQ- 116 (128)
T ss_dssp EEEEETTEEEEEEEEEEETT-EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHHHHHH-
T ss_pred EEEEechheeeeEEEEEcCc-ceEEeeEEEeeccccccHHHHHHHHHHHHCC--CCcEEEEecCCCcccchHHHHHHHH-
Confidence 34478999999999998754 7999999999999999999999999999984 44544444331 23 35555
Q ss_pred cCCcEEcCh
Q 001107 1101 SFGFKRMTA 1109 (1156)
Q Consensus 1101 klGF~~~~~ 1109 (1156)
.+||...++
T Consensus 117 a~GF~~~~~ 125 (128)
T PF12568_consen 117 ACGFSAQSD 125 (128)
T ss_dssp HHT-EE-SS
T ss_pred HcCccccCC
Confidence 899987553
No 104
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=95.08 E-value=0.0053 Score=81.93 Aligned_cols=46 Identities=48% Similarity=1.089 Sum_probs=40.6
Q ss_pred CCcccccccCCCC---ceeecCCCCCccccCCCC--CCCCCCCCCccCCCC
Q 001107 831 ENDYKCSVCHFGG---ELLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCC 876 (1156)
Q Consensus 831 ~ndd~C~vC~dgG---eLl~CD~Cp~afH~~CL~--l~~vP~g~W~Cp~C~ 876 (1156)
...-.|.+|...+ ++++|+.|..+||.+|+. +..+|.|+|+|+.|+
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~ 1156 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCR 1156 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccc
Confidence 3445799999755 399999999999999998 789999999999997
No 105
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=94.89 E-value=0.067 Score=52.02 Aligned_cols=62 Identities=23% Similarity=0.229 Sum_probs=54.2
Q ss_pred cccEEEEEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEE
Q 001107 1023 QGFYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKL 1086 (1156)
Q Consensus 1023 ~Gfy~~VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~L 1086 (1156)
.++|+ +..+|+.++.++....+.+..-|.---|..++||||+++.|+...-..+++.|.+-+
T Consensus 15 ~~~y~--~~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kii 76 (99)
T COG2388 15 NGRYV--LTDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKII 76 (99)
T ss_pred ceEEE--EecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEc
Confidence 34554 488899999998888888999999999999999999999999999999999888543
No 106
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=94.85 E-value=0.059 Score=48.57 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=34.5
Q ss_pred CCCCCEEEEEe-----CCCeEEEEEEEecCCCceEEEEeCC------CC--CeEEEecCCccccccc
Q 001107 111 LPFGLCVDVYY-----NEAWWEGVIFDLEDGSAERRIFFPD------LG--DEMTVGIDSLRITQDW 164 (1156)
Q Consensus 111 ~~vGd~VDa~~-----~dgWWeGvV~~v~~g~~~~~V~Fpg------eg--de~~~~~~dLRp~~dW 164 (1156)
|+.|+.|||.. .++|+.|+|++....+ +|.|.+.+ .. -.-.++..+|||.--.
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~-~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~pP~ 66 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGDD-KYLVEYDDLPDEDGESPPLKEWVDARRIRPCPPP 66 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT--EEEEEETT-SS--------EEEEEGGGEEE----
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCCc-EEEEEECCcccccccccccEEEechheEECcCcC
Confidence 67899999998 7899999999987654 79999963 11 2456788889997544
No 107
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=94.70 E-value=0.0049 Score=49.20 Aligned_cols=34 Identities=47% Similarity=1.269 Sum_probs=20.4
Q ss_pred CceeecCCCCCccccCCCCCCCCCCC-CCccCCCC
Q 001107 843 GELLLCDRCPSSFHRNCVGLEDVPDG-DWFCPSCC 876 (1156)
Q Consensus 843 GeLl~CD~Cp~afH~~CL~l~~vP~g-~W~Cp~C~ 876 (1156)
..|+.|+.|.-.+|..|.+...++.+ +|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 35899999999999999998888888 89998774
No 108
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=94.52 E-value=0.18 Score=56.07 Aligned_cols=93 Identities=15% Similarity=0.193 Sum_probs=72.0
Q ss_pred cCCCCCccccEEEEEEe-CCEEEEEEEEEEe------------------------------cCceEEEeEeeeecCccCC
Q 001107 1016 MLNRLNFQGFYTVLLER-NEELVTVATVRIF------------------------------GEKAAEIPLVGTRFQYRRL 1064 (1156)
Q Consensus 1016 ~~~r~df~Gfy~~VL~~-~~e~Vs~Arlri~------------------------------g~~~AEIp~VAt~~~yRgq 1064 (1156)
+.+.+|-..-|.++... +|++|||+||... ...++|+-|+||.++||+.
T Consensus 47 E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r 126 (241)
T TIGR03694 47 ETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRR 126 (241)
T ss_pred cCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHhCC
Confidence 56777765545444433 5899999999752 1368999999999999974
Q ss_pred --------C--------------------hhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCcE--EcCh
Q 001107 1065 --------G--------------------MCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFK--RMTA 1109 (1156)
Q Consensus 1065 --------G--------------------~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~--~~~~ 1109 (1156)
| +...|+.++-+.+...|+++++.-+-+.....+. ++|+. .+++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~l~r~l~-r~G~~~~~lG~ 200 (241)
T TIGR03694 127 KGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGITHWYAIMEPRLARLLS-RFGIQFRQVGP 200 (241)
T ss_pred cccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHH-HhCCceEEcCC
Confidence 2 4467899999999999999999999988888888 89974 4554
No 109
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=94.28 E-value=0.054 Score=56.43 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=47.7
Q ss_pred eEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCc---EEEecCchhhHHHhhccCCcEEc
Q 001107 1049 AAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVE---KLILPAIPTVLKTWTTSFGFKRM 1107 (1156)
Q Consensus 1049 ~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~---~LvL~A~~~A~~fw~~klGF~~~ 1107 (1156)
-+++--++|.|.||++|+|+.||+.+|......+.- -.|.-.-.-|+.||+ +|||.+.
T Consensus 69 h~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYk-kLGY~~Y 129 (173)
T KOG3234|consen 69 HGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYK-KLGYSVY 129 (173)
T ss_pred eeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHH-hcCceEE
Confidence 357889999999999999999999999998776543 344445567999999 8999763
No 110
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=94.07 E-value=0.12 Score=44.77 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=35.5
Q ss_pred CCCCCEEEEEeCCCCccceEEEEEEEEecCCC----ceEEeCCcccCCCCCCceEEEEccc
Q 001107 22 LPVGERVEVRSDEDGFLGSWHAGTVIASSSDC----RTVKYDHLLTDAGDDNLVDIVCVSS 78 (1156)
Q Consensus 22 fkvGd~VEV~s~eeG~~GsWF~AtVi~~~~~~----~~V~Y~dl~dddg~~~L~E~V~~s~ 78 (1156)
|.+|+.|-+.- ..|.||.|+|+++.... +||-|... ..++-|||+.++
T Consensus 1 ~~vG~~v~~~~----~~~~~y~A~I~~~r~~~~~~~YyVHY~g~-----nkR~DeWV~~~~ 52 (55)
T PF11717_consen 1 FEVGEKVLCKY----KDGQWYEAKILDIREKNGEPEYYVHYQGW-----NKRLDEWVPESR 52 (55)
T ss_dssp --TTEEEEEEE----TTTEEEEEEEEEEEECTTCEEEEEEETTS-----TGCC-EEEETTT
T ss_pred CCcCCEEEEEE----CCCcEEEEEEEEEEecCCCEEEEEEcCCC-----CCCceeeecHHH
Confidence 67999999996 57899999999986443 44888877 457889999753
No 111
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=94.06 E-value=0.091 Score=60.81 Aligned_cols=83 Identities=23% Similarity=0.311 Sum_probs=64.6
Q ss_pred CCccccEEEEEEeCCEEEEEEEEEEe------cC---ceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecC
Q 001107 1020 LNFQGFYTVLLERNEELVTVATVRIF------GE---KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPA 1090 (1156)
Q Consensus 1020 ~df~Gfy~~VL~~~~e~Vs~Arlri~------g~---~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A 1090 (1156)
+++.++|. ++.+.++++ +|++. |. ..|-|-.||+.|.|||+|+-|.|+...-+..++.|+.-.+|.+
T Consensus 36 l~~~n~~v--i~~nqkl~s--~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P 111 (389)
T COG4552 36 LAEPNSYV--IYMNQKLAS--RLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHP 111 (389)
T ss_pred ccCCcceE--Eeehhhhhh--cccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEecc
Confidence 34455554 477777755 34443 44 3345889999999999999999999999999999999999987
Q ss_pred chhhHHHhhccCCcEEcCh
Q 001107 1091 IPTVLKTWTTSFGFKRMTA 1109 (1156)
Q Consensus 1091 ~~~A~~fw~~klGF~~~~~ 1109 (1156)
. -.+||. ||||...+.
T Consensus 112 ~--s~~iYr-KfGye~asn 127 (389)
T COG4552 112 F--SGGIYR-KFGYEYASN 127 (389)
T ss_pred C--chhhHh-hccccccce
Confidence 6 368999 999988664
No 112
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=94.05 E-value=0.15 Score=53.35 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=61.6
Q ss_pred EEE-eCCEEEEEEEEEEec-----CceEEEeEeeeecCccCCChhHHHHHHHHH-HHHHcCCcEEEecCc---hhhHHHh
Q 001107 1029 LLE-RNEELVTVATVRIFG-----EKAAEIPLVGTRFQYRRLGMCRILMNELEK-RLMELGVEKLILPAI---PTVLKTW 1098 (1156)
Q Consensus 1029 VL~-~~~e~Vs~Arlri~g-----~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~-~l~~lgV~~LvL~A~---~~A~~fw 1098 (1156)
|.+ .+|.+||-....++. ..-.+|-.+||...||+.|+++.||....+ ++.-.+.+.+-|+.+ ..|+..|
T Consensus 45 VA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY 124 (193)
T KOG3235|consen 45 VAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLY 124 (193)
T ss_pred EEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhh
Confidence 445 578999977666654 124579999999999999999999976444 344556777888766 4589999
Q ss_pred hccCCcEEcC
Q 001107 1099 TTSFGFKRMT 1108 (1156)
Q Consensus 1099 ~~klGF~~~~ 1108 (1156)
++.+||.+.+
T Consensus 125 ~~tl~F~v~e 134 (193)
T KOG3235|consen 125 KNTLGFVVCE 134 (193)
T ss_pred hhccceEEee
Confidence 9999999866
No 113
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=93.51 E-value=0.034 Score=57.45 Aligned_cols=26 Identities=35% Similarity=0.799 Sum_probs=23.1
Q ss_pred cccccccccCCcchhccCCCCCcccCccchh
Q 001107 906 KYHRKCLQNGATDKLKTHAKETWFCSKKCEE 936 (1156)
Q Consensus 906 ~YH~~CL~~~~~~~L~e~p~~~WfC~~~C~~ 936 (1156)
.||..||+|+ |.++|+++|+|+. |..
T Consensus 1 g~H~~CL~Pp----l~~~P~g~W~Cp~-C~~ 26 (148)
T cd04718 1 GFHLCCLRPP----LKEVPEGDWICPF-CEV 26 (148)
T ss_pred CcccccCCCC----CCCCCCCCcCCCC-CcC
Confidence 4999999998 8999999999997 653
No 114
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=93.45 E-value=0.067 Score=63.72 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=47.2
Q ss_pred ecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCcEEcCh
Q 001107 1058 RFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRMTA 1109 (1156)
Q Consensus 1058 ~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~~~~~ 1109 (1156)
...+|++|||+.||+..|+.|++.|.++|.+=+...+..+|. ||||...++
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~-k~GY~~~gp 509 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYR-KLGYELDGP 509 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHH-HhCccccCC
Confidence 578999999999999999999999999998888889999999 999988765
No 115
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=93.41 E-value=0.026 Score=67.41 Aligned_cols=42 Identities=43% Similarity=1.084 Sum_probs=34.8
Q ss_pred cccccCCCC-----ceeecCCCCCccccCCCC------CCCCCCCCCccCCCC
Q 001107 835 KCSVCHFGG-----ELLLCDRCPSSFHRNCVG------LEDVPDGDWFCPSCC 876 (1156)
Q Consensus 835 ~C~vC~dgG-----eLl~CD~Cp~afH~~CL~------l~~vP~g~W~Cp~C~ 876 (1156)
.|.+|..|+ +||.|+.|...||..|+. +..-+.+.|||..|.
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~ 222 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCN 222 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhc
Confidence 499998654 599999999999999997 334577889999986
No 116
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=93.15 E-value=0.5 Score=41.36 Aligned_cols=50 Identities=18% Similarity=0.444 Sum_probs=38.0
Q ss_pred CCCCCCCEEEEEeCC--CeEEEEEEEecCCCceEEEEeCCCCCeEEEecCCcc
Q 001107 109 CSLPFGLCVDVYYNE--AWWEGVIFDLEDGSAERRIFFPDLGDEMTVGIDSLR 159 (1156)
Q Consensus 109 ~~~~vGd~VDa~~~d--gWWeGvV~~v~~g~~~~~V~Fpgegde~~~~~~dLR 159 (1156)
..|..|+.|.+||-+ -|.+|.|++....+..|+|.|.+ |.++++...++.
T Consensus 4 ~k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~D-Gtel~lke~dik 55 (55)
T PF09465_consen 4 RKFAIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYED-GTELELKENDIK 55 (55)
T ss_dssp SSS-SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETT-S-EEEEECCCEE
T ss_pred ccccCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcC-CCEEEecccccC
Confidence 478899999999977 68899999976655689999998 888999888763
No 117
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=93.07 E-value=0.16 Score=48.02 Aligned_cols=62 Identities=26% Similarity=0.407 Sum_probs=34.6
Q ss_pred ccceEEEEEEEEecCC-------Cce-EEeCCcccCCCCCCceEEEEccccccCCccccccccCCCCcccCCCCCCCCCC
Q 001107 37 FLGSWHAGTVIASSSD-------CRT-VKYDHLLTDAGDDNLVDIVCVSSIINSSTFADVTQSHSRGHIRPLPPPVKFGK 108 (1156)
Q Consensus 37 ~~GsWF~AtVi~~~~~-------~~~-V~Y~dl~dddg~~~L~E~V~~s~~~~g~~~~~~~r~~~r~~IRP~PP~~~~~~ 108 (1156)
..||||.|+|+.+... -.| |+|+++..+ | ...+.. ..|||..-..- .-
T Consensus 8 ~~gAWfEa~i~~i~~~~~~~~e~viYhIkyddype~-g----vv~~~~------------------~~iRpRARt~l-~w 63 (85)
T PF12148_consen 8 NMGAWFEAQIVTITKKCMSDDEDVIYHIKYDDYPEN-G----VVEMRS------------------KDIRPRARTIL-KW 63 (85)
T ss_dssp TT-EEEEEEEEEEEES-SSSSTTEEEEEEETT-GGG------EEEEEG------------------GGEEE---SBE--G
T ss_pred CCcceEEEEEEEeeccCCCCCCCEEEEEEeccCCCc-C----ceeccc------------------ccccceeeEec-cH
Confidence 4699999999987532 245 999998643 1 223433 46898765432 23
Q ss_pred CCCCCCCEEEEEeC
Q 001107 109 CSLPFGLCVDVYYN 122 (1156)
Q Consensus 109 ~~~~vGd~VDa~~~ 122 (1156)
..+++|+.|=+-||
T Consensus 64 ~~L~VG~~VMvNYN 77 (85)
T PF12148_consen 64 DELKVGQVVMVNYN 77 (85)
T ss_dssp GG--TT-EEEEEE-
T ss_pred HhCCcccEEEEecC
Confidence 47999999988876
No 118
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=92.63 E-value=0.86 Score=44.39 Aligned_cols=82 Identities=20% Similarity=0.067 Sum_probs=64.2
Q ss_pred chhHHHHHhhhcccCCCCCccccEEEEEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcC
Q 001107 1003 GDLAEDVLFSRWSMLNRLNFQGFYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELG 1082 (1156)
Q Consensus 1003 ~Dli~~~vy~~gs~~~r~df~Gfy~~VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lg 1082 (1156)
.+..++++-..... .....++++.+|++||++..- ...+.+..-..++.++|++.+.|..|+..+-+.+.+.|
T Consensus 55 ~~~~~~l~~~~~~~------~~~~l~~~~~~g~~va~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g 127 (142)
T PF13480_consen 55 RDFFRDLLRSLAES------GRLRLFVLYDGGEPVAFALGF-RHGGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERG 127 (142)
T ss_pred HHHHHHHHHhhccC------CCEEEEEEEECCEEEEEEEEE-EECCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCC
Confidence 45556555543211 234666788899999988665 45567889999999999999999999999999999999
Q ss_pred CcEEEecCc
Q 001107 1083 VEKLILPAI 1091 (1156)
Q Consensus 1083 V~~LvL~A~ 1091 (1156)
++.+-+...
T Consensus 128 ~~~~d~g~g 136 (142)
T PF13480_consen 128 LRYFDFGGG 136 (142)
T ss_pred CCEEEECCC
Confidence 999887765
No 119
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=92.15 E-value=0.39 Score=39.61 Aligned_cols=42 Identities=17% Similarity=0.296 Sum_probs=30.8
Q ss_pred CCEEEEEeCCCCccceEEEEEEEEecCCCce-EEeCCcccCCCCCCceEEEEc
Q 001107 25 GERVEVRSDEDGFLGSWHAGTVIASSSDCRT-VKYDHLLTDAGDDNLVDIVCV 76 (1156)
Q Consensus 25 Gd~VEV~s~eeG~~GsWF~AtVi~~~~~~~~-V~Y~dl~dddg~~~L~E~V~~ 76 (1156)
|+.+-++..+ -|.||+|+|+++.+...+ |.|.|+-+ .|.|+.
T Consensus 1 G~~c~a~~~~---d~~wyra~V~~~~~~~~~~V~f~DyG~-------~~~v~~ 43 (48)
T cd04508 1 GDLCLAKYSD---DGKWYRAKITSILSDGKVEVFFVDYGN-------TEVVPL 43 (48)
T ss_pred CCEEEEEECC---CCeEEEEEEEEECCCCcEEEEEEcCCC-------cEEEeH
Confidence 6677777554 378999999999855544 99998832 466775
No 120
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=92.09 E-value=0.33 Score=40.05 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=39.1
Q ss_pred CCEEEEEeC--CCeEEEEEEEecCCCceEEEEeCCCCCeEEEecCCccc
Q 001107 114 GLCVDVYYN--EAWWEGVIFDLEDGSAERRIFFPDLGDEMTVGIDSLRI 160 (1156)
Q Consensus 114 Gd~VDa~~~--dgWWeGvV~~v~~g~~~~~V~Fpgegde~~~~~~dLRp 160 (1156)
|+.|=|.+. +.|..|+|.++.. ...+.|+|-+-|....++.++||+
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~~~l~~ 48 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPLSDLRP 48 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeHHHcCC
Confidence 677778776 8999999999975 347999999988988999999986
No 121
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=90.70 E-value=0.067 Score=71.89 Aligned_cols=50 Identities=24% Similarity=0.758 Sum_probs=40.4
Q ss_pred cccCCCCCCCCccccccCCceeecccccccccccccccCCcchhccCCCCCcccCccchhhHh
Q 001107 877 CSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCEEIFL 939 (1156)
Q Consensus 877 C~iCg~~~~~~~~~~~~~g~ll~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfC~~~C~~i~~ 939 (1156)
|.+|.+.... ..++.|+.|..+||..|+++. +...|.++|||+. |..-..
T Consensus 1111 c~~cr~k~~~--------~~m~lc~~c~~~~h~~C~rp~----~~~~~~~dW~C~~-c~~e~~ 1160 (1404)
T KOG1245|consen 1111 CKVCRRKKQD--------EKMLLCDECLSGFHLFCLRPA----LSSVPPGDWMCPS-CRKEHR 1160 (1404)
T ss_pred hhhhhhcccc--------hhhhhhHhhhhhHHHHhhhhh----hccCCcCCccCCc-cchhhh
Confidence 6677665442 358999999999999999987 8899999999996 765443
No 122
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=90.42 E-value=1.1 Score=48.02 Aligned_cols=83 Identities=13% Similarity=0.183 Sum_probs=58.6
Q ss_pred EEEEEEeCCEEEEEEEEEEec-------CceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHh
Q 001107 1026 YTVLLERNEELVTVATVRIFG-------EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTW 1098 (1156)
Q Consensus 1026 y~~VL~~~~e~Vs~Arlri~g-------~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw 1098 (1156)
+.+++...+++||++.+-.+. ..+.-+.+.=+.|+|||+|+++.+...+-+.+.. +-...++.+...+..||
T Consensus 48 ~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~~-~~~N~~~~~~~~~~~~w 126 (181)
T PF06852_consen 48 VLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMKLQDDICMDELDS-VDDNSVAQGNVKMSNFW 126 (181)
T ss_pred EEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHHHHHHHHHHHhcc-CCCceeeecCHHHHHHH
Confidence 333334446688876663322 3477888899999999999996444444344444 44567778888999999
Q ss_pred hccCCcEEcCh
Q 001107 1099 TTSFGFKRMTA 1109 (1156)
Q Consensus 1099 ~~klGF~~~~~ 1109 (1156)
..-|||..++.
T Consensus 127 ~k~~G~~~~~h 137 (181)
T PF06852_consen 127 HKMFGFDDYGH 137 (181)
T ss_pred HHHhCCCCCcc
Confidence 99999988877
No 123
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=90.15 E-value=2 Score=46.90 Aligned_cols=95 Identities=7% Similarity=0.009 Sum_probs=70.7
Q ss_pred cccCCCCCccc-cEEEEEEeCCEEEEEEEEEEe---------------------cCceEEEeEeeeecCcc---CCC---
Q 001107 1014 WSMLNRLNFQG-FYTVLLERNEELVTVATVRIF---------------------GEKAAEIPLVGTRFQYR---RLG--- 1065 (1156)
Q Consensus 1014 gs~~~r~df~G-fy~~VL~~~~e~Vs~Arlri~---------------------g~~~AEIp~VAt~~~yR---gqG--- 1065 (1156)
|-+.+.+|... .|.+....+|++||++||-.. ..+++|+-|+||.+.++ +.+
T Consensus 42 g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~ 121 (207)
T PRK13834 42 GEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLH 121 (207)
T ss_pred CcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccC
Confidence 44667777644 444555567899999998321 24789999999999853 222
Q ss_pred -hhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCcEE--cCh
Q 001107 1066 -MCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKR--MTA 1109 (1156)
Q Consensus 1066 -~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~~--~~~ 1109 (1156)
+...|+.++-+++...|++.++.-...-....+. ++||.. +++
T Consensus 122 ~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~-r~G~~~~~lG~ 167 (207)
T PRK13834 122 EATLTMFAGIIEWSMANGYTEIVTATDLRFERILA-RAGWPMQRLGE 167 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH-HcCCCeEECCC
Confidence 5578999999999999999998887777778887 789744 454
No 124
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=88.62 E-value=6.4 Score=40.22 Aligned_cols=106 Identities=22% Similarity=0.323 Sum_probs=65.0
Q ss_pred CCCCEEEEEeCCCCccceEEEEEEEEecCCC-ce-EEeCCcccCCCCCCceEEEEccccccCCccccccccCCCCcccCC
Q 001107 23 PVGERVEVRSDEDGFLGSWHAGTVIASSSDC-RT-VKYDHLLTDAGDDNLVDIVCVSSIINSSTFADVTQSHSRGHIRPL 100 (1156)
Q Consensus 23 kvGd~VEV~s~eeG~~GsWF~AtVi~~~~~~-~~-V~Y~dl~dddg~~~L~E~V~~s~~~~g~~~~~~~r~~~r~~IRP~ 100 (1156)
++|+.|=.+-...+-.+.|+-|+|++..++. +| |+ |.-+++ +.. .=.++ +.+|=|+
T Consensus 1 q~G~~VAak~~~~~~~~~WIla~Vv~~~~~~~rYeV~--D~d~~~-~~~-~~~~~------------------~~~iIPL 58 (130)
T PF07039_consen 1 QPGDQVAAKVKQGNEEEEWILAEVVKYNSDGNRYEVE--DPDPEE-EKK-RYKLS------------------RKQIIPL 58 (130)
T ss_dssp -TT-EEEEEECTTTTTCEEEEEEEEEEETTTTEEEEE--ETTTCT-TTE-EEEEE------------------GGGEEEE
T ss_pred CCCCEEEEEcCCCCCCCCEEEEEEEEEeCCCCEEEEe--cCCCCC-CCc-eEEeC------------------HHHEEEC
Confidence 4799999987655667899999999998877 55 44 221111 111 22222 2456676
Q ss_pred CC---CCCCCCCCCCCCCEEEEEeCC--CeEEEEEEEe-cCCCceEEEEeCCCCCe
Q 001107 101 PP---PVKFGKCSLPFGLCVDVYYNE--AWWEGVIFDL-EDGSAERRIFFPDLGDE 150 (1156)
Q Consensus 101 PP---~~~~~~~~~~vGd~VDa~~~d--gWWeGvV~~v-~~g~~~~~V~Fpgegde 150 (1156)
|. +.......|..|..|=|.|=+ +...++|... ......|.|.|.|+.+.
T Consensus 59 P~~~~~~~~~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~ 114 (130)
T PF07039_consen 59 PKKAPPDTDPLAEFPKGTKVLALYPDTTCFYPATVVSPPKKKSGEYKLKFEDDEDA 114 (130)
T ss_dssp -SB--TTT-GGGS--TT-EEEEE-TTSSEEEEEEEEEE-SSTTS-EEEEECTTTST
T ss_pred CCccCCCCCchhhCCCCCEEEEECCCCceEEEEEEEeCCCCCCCcEEEEEeCCCCc
Confidence 66 111224679999999999877 9999999987 22234799999986664
No 125
>smart00258 SAND SAND domain.
Probab=87.99 E-value=0.28 Score=45.26 Aligned_cols=45 Identities=27% Similarity=0.304 Sum_probs=35.9
Q ss_pred CCceEcCC--C-CCeeeecceeecCCCCCcCCCceeEccCCcchhhhh
Q 001107 759 RDGIKCKC--C-GKVYTLSGFEDHAGSTYCNPASHIFLQDGRSLLDCQ 803 (1156)
Q Consensus 759 ~~GI~C~c--C-~~~fs~S~FE~HAG~~~~~P~~~I~L~dGkSL~~c~ 803 (1156)
..|+.+.| | +++|||++||.++|....+.|..-+..+|.+|...+
T Consensus 20 ~~G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sIR~~g~~Lr~L~ 67 (73)
T smart00258 20 KCGISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSIRCGGSSLRTLM 67 (73)
T ss_pred hcCcccCCccCCCEEEChHHHHhhcCCcccCCcchheeECCccHHHHH
Confidence 33554444 4 589999999999999888899988889999986544
No 126
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=87.85 E-value=1.2 Score=40.99 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=39.2
Q ss_pred CCCCCEEEEEeCC-CeEEEEEEEecC------CCceEEEEeCCCCCeEEEecCCcccccc
Q 001107 111 LPFGLCVDVYYNE-AWWEGVIFDLED------GSAERRIFFPDLGDEMTVGIDSLRITQD 163 (1156)
Q Consensus 111 ~~vGd~VDa~~~d-gWWeGvV~~v~~------g~~~~~V~Fpgegde~~~~~~dLRp~~d 163 (1156)
|.+||.|=|-..+ .||.|+|..... ....+.|+|-|+.+..-+..++|+|-.+
T Consensus 1 f~~GdlVWaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~i~~f~~ 60 (86)
T PF00855_consen 1 FRPGDLVWAKLKGYPWWPARVCDPDEKSKKKRKDGHVLVRFFGDNDYAWVKPSNIKPFSE 60 (86)
T ss_dssp -STTEEEEEEETTSEEEEEEEEECCHCTSCSSSSTEEEEEETTTTEEEEEEGGGEEECCH
T ss_pred CCCCCEEEEEeCCCCCCceEEeecccccccCCCCCEEEEEecCCCCEEEECHHHhhChhh
Confidence 5689999886654 799999998732 2347999999988766677777776553
No 127
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=87.75 E-value=0.3 Score=63.85 Aligned_cols=47 Identities=23% Similarity=0.839 Sum_probs=34.7
Q ss_pred cccCCCCCCCCccccccCCceeecccccccccccccccCCcchhccCCCCCcccCccchh
Q 001107 877 CSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCEE 936 (1156)
Q Consensus 877 C~iCg~~~~~~~~~~~~~g~ll~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfC~~~C~~ 936 (1156)
|.+|.+...+.. +.+++||.|..++|..|.. ..-+|++.|+|-+ |-.
T Consensus 222 C~iC~~~~~~n~------n~ivfCD~Cnl~VHq~Cyg------i~~ipeg~WlCr~-Cl~ 268 (1051)
T KOG0955|consen 222 CCICLDGECQNS------NVIVFCDGCNLAVHQECYG------IPFIPEGQWLCRR-CLQ 268 (1051)
T ss_pred ceeecccccCCC------ceEEEcCCCcchhhhhccC------CCCCCCCcEeehh-hcc
Confidence 555655543321 4589999999999999998 3457999999975 644
No 128
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=86.88 E-value=1.1 Score=47.66 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=51.3
Q ss_pred EEEEEEeCCEEEEEEEEEEecC-----ceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchh
Q 001107 1026 YTVLLERNEELVTVATVRIFGE-----KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPT 1093 (1156)
Q Consensus 1026 y~~VL~~~~e~Vs~Arlri~g~-----~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~ 1093 (1156)
|-+|-+ ++++||.-.||-.=. ...+|. -+|+|+.||+||++.++.-.-+.++.+|++++.+-+..+
T Consensus 71 y~~v~~-d~~ivG~i~lRh~Ln~~ll~~gGHIG-Y~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~d 141 (174)
T COG3981 71 YWAVDE-DGQIVGFINLRHQLNDFLLEEGGHIG-YSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKD 141 (174)
T ss_pred EEEEec-CCcEEEEEEeeeecchHHHhcCCccc-ceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 333333 799999999996422 122343 369999999999999999999999999999998887643
No 129
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=86.37 E-value=4.5 Score=43.42 Aligned_cols=91 Identities=13% Similarity=0.117 Sum_probs=66.9
Q ss_pred cccCCCCCc-cccEEEEEEeCCEEEEEEEEEEe---------------------cCceEEEeEeeeecCccC------CC
Q 001107 1014 WSMLNRLNF-QGFYTVLLERNEELVTVATVRIF---------------------GEKAAEIPLVGTRFQYRR------LG 1065 (1156)
Q Consensus 1014 gs~~~r~df-~Gfy~~VL~~~~e~Vs~Arlri~---------------------g~~~AEIp~VAt~~~yRg------qG 1065 (1156)
|-+.+.+|- ...|.+++ .+|+++|++||... +.+++|+-|+|+.++.++ .-
T Consensus 34 g~E~DqyD~~~~~ylv~~-~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~ 112 (182)
T PF00765_consen 34 GMEIDQYDDPDAVYLVAL-DDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSP 112 (182)
T ss_dssp SEE--TTGCTT-EEEEEE-ETTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-T
T ss_pred CcEeeecCCCCCeEEEEE-ECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccH
Confidence 446667764 34555544 56999999999731 147899999999988532 23
Q ss_pred hhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCcEE
Q 001107 1066 MCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKR 1106 (1156)
Q Consensus 1066 ~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~~ 1106 (1156)
+...|+.++-+.+.+.|++.++.-+..-...++. ++||..
T Consensus 113 ~~~~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~-r~G~~~ 152 (182)
T PF00765_consen 113 VTMELLLGMVEFALSNGIRHIVGVVDPAMERILR-RAGWPV 152 (182)
T ss_dssp HHHHHHHHHHHHHHCTT-SEEEEEEEHHHHHHHH-HCT-EE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEChHHHHHHH-HcCCce
Confidence 6789999999999999999999999888899999 899976
No 130
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=85.58 E-value=4.5 Score=39.21 Aligned_cols=52 Identities=12% Similarity=0.023 Sum_probs=40.8
Q ss_pred CCCCCCCCCEEEEEeCCCCccceEEEEEEEEecCCCceEEeCCcccCCCCCCceEEEEc
Q 001107 18 GQRKLPVGERVEVRSDEDGFLGSWHAGTVIASSSDCRTVKYDHLLTDAGDDNLVDIVCV 76 (1156)
Q Consensus 18 ~~~~fkvGd~VEV~s~eeG~~GsWF~AtVi~~~~~~~~V~Y~dl~dddg~~~L~E~V~~ 76 (1156)
....|++|.++|+..... -..+-.|||+++.|....|.|+...+. --.|++.
T Consensus 24 ~~~~F~vGmkLEavD~~~--~~~i~vAtV~~v~g~~l~v~~dg~~~~-----~D~W~~~ 75 (96)
T smart00561 24 PPNGFKVGMKLEAVDPRN--PSLICVATVVEVKGYRLLLHFDGWDDK-----YDFWCDA 75 (96)
T ss_pred ccCcccCCCEEEEECCCC--CceEEEEEEEEEECCEEEEEEccCCCc-----CCEEEEC
Confidence 467899999999995433 467889999999988777999977321 4579987
No 131
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=85.30 E-value=1 Score=42.74 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=45.3
Q ss_pred CCCCCEEEEEeCC-CeEEEEEEEecCC------CceEEEEeCCCCCeEEEecCCccccccccc
Q 001107 111 LPFGLCVDVYYNE-AWWEGVIFDLEDG------SAERRIFFPDLGDEMTVGIDSLRITQDWDE 166 (1156)
Q Consensus 111 ~~vGd~VDa~~~d-gWWeGvV~~v~~g------~~~~~V~Fpgegde~~~~~~dLRp~~dW~~ 166 (1156)
|.+||.|=+=..+ .||.|.|++.... ...+.|+|-|+++.--++.++|-|..+..+
T Consensus 1 f~vGDlVWaK~kg~pwWP~~V~~~~~~~~~~~~~~~~~V~fFGs~~~a~v~~~~l~pf~e~~~ 63 (87)
T cd05835 1 FNVGDLVWGKIKGFPWWPGRVVSITVTSKRPPVVGMRWVTWFGSGTFSEVSVDKLSPFSEFFK 63 (87)
T ss_pred CCCCCEEEEecCCCCCCCeEEechhhcccccCCCCeEEEEEeCCCCEeEECHHHCcChhHhHH
Confidence 5689999886555 9999999886332 136999999999988899999999988863
No 132
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=85.15 E-value=0.53 Score=61.58 Aligned_cols=119 Identities=30% Similarity=0.552 Sum_probs=77.0
Q ss_pred CcccccccCCCCc--eeecCCCCCccccCCCC--CCCCCCCCCccCCCCcccCCCCCCCCccccccCCceeecccccccc
Q 001107 832 NDYKCSVCHFGGE--LLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCCCSICGNSNSREEVEDVVDGSVLICHQCELKY 907 (1156)
Q Consensus 832 ndd~C~vC~dgGe--Ll~CD~Cp~afH~~CL~--l~~vP~g~W~Cp~C~C~iCg~~~~~~~~~~~~~g~ll~CdqCer~Y 907 (1156)
....|..|..+.. ++.|+.|...||.+|+. +..+++|+|.|+.|....|...... ..-.+=.+.|
T Consensus 154 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~gf~~~~~~y 222 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYK-----------FGFEQGSREY 222 (904)
T ss_pred cchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccc-----------cCcCCCCCcc
Confidence 3356888887663 34999999999999998 7899999999999987755443321 1122334455
Q ss_pred cccccccCCcchhccCCCCCcccCccchhhHhhhhhhcCCCcc--cccCccceEEeecccCcccccccchhhhh
Q 001107 908 HRKCLQNGATDKLKTHAKETWFCSKKCEEIFLGLQRLLGKPIP--IGVPNLTWTLVKFSQHDTCKLDATDIQTL 979 (1156)
Q Consensus 908 H~~CL~~~~~~~L~e~p~~~WfC~~~C~~i~~~L~~llg~~~~--~~vd~~sW~LL~~~~~d~~v~~~adie~~ 979 (1156)
+...... +.+..+...|..+. .+.+ ..++..+|+++.....++.+.+++|.++.
T Consensus 223 t~~~f~~-----~~~~~~~~~~~~~~-------------~~~~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~ 278 (904)
T KOG1246|consen 223 TLPKFEE-----YADNFKKDYFPKSK-------------NSPDSTEDVEKEFWRLVASNLESVEVLYGADLSTK 278 (904)
T ss_pred ccchhhh-----Hhhhhhcccccccc-------------CCCCchHHHHHHHHHhhcccccceeeeeccchhhc
Confidence 5443322 23334444454331 1111 24678899999988777777888887654
No 133
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=85.08 E-value=0.43 Score=56.99 Aligned_cols=32 Identities=25% Similarity=0.831 Sum_probs=28.2
Q ss_pred CceeecccccccccccccccCCcchhccCCCCCcccCc
Q 001107 895 GSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSK 932 (1156)
Q Consensus 895 g~ll~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfC~~ 932 (1156)
+.+++|+.|+-..|..|.+ +.-+|+|.|+|-+
T Consensus 208 naiVfCdgC~i~VHq~CYG------I~f~peG~WlCrk 239 (669)
T COG5141 208 NAIVFCDGCEICVHQSCYG------IQFLPEGFWLCRK 239 (669)
T ss_pred ceEEEecCcchhhhhhccc------ceecCcchhhhhh
Confidence 5699999999999999987 5568999999975
No 134
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=84.40 E-value=0.48 Score=59.02 Aligned_cols=48 Identities=23% Similarity=0.790 Sum_probs=36.2
Q ss_pred cccCCCCCCCCccccccCCceeecccccccccccccccCCcchhccCCCCCcccCccchhh
Q 001107 877 CSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCEEI 937 (1156)
Q Consensus 877 C~iCg~~~~~~~~~~~~~g~ll~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfC~~~C~~i 937 (1156)
|.+|..++.++. +.|++|+.|.--.|..|.. +.++|++.|.|.. |...
T Consensus 274 CDvCrspD~e~~------neMVfCd~Cn~cVHqaCyG------Ile~p~gpWlCr~-Calg 321 (893)
T KOG0954|consen 274 CDVCRSPDSEEA------NEMVFCDKCNICVHQACYG------ILEVPEGPWLCRT-CALG 321 (893)
T ss_pred eceecCCCcccc------ceeEEeccchhHHHHhhhc------eeecCCCCeeehh-cccc
Confidence 555555544332 5699999999999999987 6789999999975 6543
No 135
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=84.11 E-value=2.2 Score=48.35 Aligned_cols=57 Identities=14% Similarity=0.265 Sum_probs=43.3
Q ss_pred CCCCCCCCEEEEEe--CCCeEEEEEEEecCCCceEEEEeCCCCCeEEEecCCccccccc
Q 001107 108 KCSLPFGLCVDVYY--NEAWWEGVIFDLEDGSAERRIFFPDLGDEMTVGIDSLRITQDW 164 (1156)
Q Consensus 108 ~~~~~vGd~VDa~~--~dgWWeGvV~~v~~g~~~~~V~Fpgegde~~~~~~dLRp~~dW 164 (1156)
...|+|||..-|.| +|.|.+++|..+......+.|.|.+=|..-++...+|+|.-..
T Consensus 66 ~~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~dL~~~~~~ 124 (264)
T PF06003_consen 66 NKKWKVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLSDLKPSEGD 124 (264)
T ss_dssp TT---TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEEETT--
T ss_pred ccCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehhhhcccccc
Confidence 35899999999977 5679999999997655679999999888889999999998665
No 136
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=83.59 E-value=12 Score=42.33 Aligned_cols=108 Identities=22% Similarity=0.389 Sum_probs=67.0
Q ss_pred CCCCCCCEEEEEeCCCCccceEEEEEEEEecCCCce-EEeCCcccCCCCCCceEEEEccccccCCccccccccCCCCccc
Q 001107 20 RKLPVGERVEVRSDEDGFLGSWHAGTVIASSSDCRT-VKYDHLLTDAGDDNLVDIVCVSSIINSSTFADVTQSHSRGHIR 98 (1156)
Q Consensus 20 ~~fkvGd~VEV~s~eeG~~GsWF~AtVi~~~~~~~~-V~Y~dl~dddg~~~L~E~V~~s~~~~g~~~~~~~r~~~r~~IR 98 (1156)
-...+|+.|-.+..-..=.|-|+-|.|+++.++.+| ++- + |+++. .+ |.....++. --++..+=
T Consensus 126 ~~~~~gd~VAa~v~~~~~dg~WIlaeVv~~~~~~~ye~ev--~-D~Epk-~d-~~g~r~~~y----------klp~~~~~ 190 (264)
T KOG3038|consen 126 YVLLKGDEVAARVKAVSEDGDWILAEVVKVSSETRYEFEV--V-DPEPK-KD-EVGNRGQLY----------KLPRWKLN 190 (264)
T ss_pred ccccCCceeeeeeeeccCCCCEEEEEEEEEecCCceEeEe--c-CCCcc-cc-cccccccee----------cccHhhcC
Confidence 455778888877643333455999999999988875 442 2 22211 11 111100000 01234456
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEeCC--CeEEEEEEEe-cCCCceEEEEeCC
Q 001107 99 PLPPPVKFGKCSLPFGLCVDVYYNE--AWWEGVIFDL-EDGSAERRIFFPD 146 (1156)
Q Consensus 99 P~PP~~~~~~~~~~vGd~VDa~~~d--gWWeGvV~~v-~~g~~~~~V~Fpg 146 (1156)
|.||+. ..|..|..|=|.|-+ |..-|+|..- -++++.|.|.|-+
T Consensus 191 p~p~p~----~~fpp~~~VLA~YP~TTcFY~aiVh~tp~d~s~~y~vlffD 237 (264)
T KOG3038|consen 191 PIPPPT----ALFPPGTIVLAVYPGTTCFYKAIVHSTPRDGSCDYYVLFFD 237 (264)
T ss_pred CCCCCc----cCCCCCCEEEEEcCCcceeeeeEeecCCCCCCCcceeeeec
Confidence 666643 378999999999988 9999999884 5566677777665
No 137
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=82.77 E-value=0.68 Score=57.35 Aligned_cols=39 Identities=26% Similarity=0.806 Sum_probs=33.5
Q ss_pred cccCCceeeccc--ccccccccccccCCcchhccCCCCCcccCccchh
Q 001107 891 DVVDGSVLICHQ--CELKYHRKCLQNGATDKLKTHAKETWFCSKKCEE 936 (1156)
Q Consensus 891 ~~~~g~ll~Cdq--Cer~YH~~CL~~~~~~~L~e~p~~~WfC~~~C~~ 936 (1156)
++.++.|+.||. |.-+.|..|.. +..+|.+.|||-+ |+.
T Consensus 16 GWaeNPLVYCDG~nCsVAVHQaCYG------IvqVPtGpWfCrK-Ces 56 (900)
T KOG0956|consen 16 GWAENPLVYCDGHNCSVAVHQACYG------IVQVPTGPWFCRK-CES 56 (900)
T ss_pred CCccCceeeecCCCceeeeehhcce------eEecCCCchhhhh-hhh
Confidence 566788999996 99999999987 6789999999974 875
No 138
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=82.39 E-value=0.41 Score=38.37 Aligned_cols=32 Identities=22% Similarity=0.812 Sum_probs=17.1
Q ss_pred CceeecccccccccccccccCCcchhccCCCC-CcccCc
Q 001107 895 GSVLICHQCELKYHRKCLQNGATDKLKTHAKE-TWFCSK 932 (1156)
Q Consensus 895 g~ll~CdqCer~YH~~CL~~~~~~~L~e~p~~-~WfC~~ 932 (1156)
+.++.|+.|.-..|..|..-. ..+.+ .|+|..
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~------~~~~~~~W~C~~ 34 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVS------EVPDGDDWLCDR 34 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-S------S--SS-----HH
T ss_pred CceEEeCCCCCcCChhhCCcc------cCCCCCcEECCc
Confidence 358999999999999999854 33444 699964
No 139
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=82.15 E-value=2.4 Score=39.94 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=37.5
Q ss_pred CCCCCEEEEEeC-CCeEEEEEEEecCCCceEEEEeCCCC-CeEEEecCCcccc
Q 001107 111 LPFGLCVDVYYN-EAWWEGVIFDLEDGSAERRIFFPDLG-DEMTVGIDSLRIT 161 (1156)
Q Consensus 111 ~~vGd~VDa~~~-dgWWeGvV~~v~~g~~~~~V~Fpgeg-de~~~~~~dLRp~ 161 (1156)
|.+||.|=|=.. --||.|+|.++.++..+|.|+|-|++ ..-....++|-|.
T Consensus 1 f~~gdlVWaK~~g~P~WPa~I~~~~~~~~k~~V~FfG~~~~~a~~~~~~l~p~ 53 (80)
T cd06080 1 FEKNDLVWAKIQGYPWWPAVIKSISRKKQKARVNFIGDNMQSEKKGIRVVKRW 53 (80)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeeecCCCCEEEEEEeCCCCceeccchhhcccc
Confidence 568999988544 49999999998776668999999977 3333455555443
No 140
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=82.07 E-value=2.5 Score=39.62 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=44.2
Q ss_pred CCCCCEEEEEeCC-CeEEEEEEEecCC---------CceEEEEeCCCCCeEEEecCCcccccccc
Q 001107 111 LPFGLCVDVYYNE-AWWEGVIFDLEDG---------SAERRIFFPDLGDEMTVGIDSLRITQDWD 165 (1156)
Q Consensus 111 ~~vGd~VDa~~~d-gWWeGvV~~v~~g---------~~~~~V~Fpgegde~~~~~~dLRp~~dW~ 165 (1156)
|.+||.|=|=..+ .||.|+|++.... ...|.|+|-|+.+..-++.++|+|-.+-.
T Consensus 1 f~~GdlVwaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~l~pf~~~~ 65 (87)
T cd05162 1 FRPGDLVWAKMKGYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFGDKTFAWVGAERLKPFTEHK 65 (87)
T ss_pred CCCCCEEEEeCCCCCCCCEEEccccccchhhhccCCCCEEEEEEeCCCcEEEeCccceeeccchH
Confidence 5789999887777 9999999886432 13699999998888888888888877665
No 141
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=80.99 E-value=0.51 Score=55.83 Aligned_cols=75 Identities=20% Similarity=0.528 Sum_probs=41.9
Q ss_pred cccccCCC--CceeecCCCCCccccCCCC-------CCCC-----CCCCCccCCCC-------cccCCCCCCCCcccccc
Q 001107 835 KCSVCHFG--GELLLCDRCPSSFHRNCVG-------LEDV-----PDGDWFCPSCC-------CSICGNSNSREEVEDVV 893 (1156)
Q Consensus 835 ~C~vC~dg--GeLl~CD~Cp~afH~~CL~-------l~~v-----P~g~W~Cp~C~-------C~iCg~~~~~~~~~~~~ 893 (1156)
.|.+|+.. +.+| -.|.++||..|+. |..+ .++.-||-.|- |.+|+++..-.+..
T Consensus 336 kC~~Cg~~I~d~iL--rA~GkayHp~CF~Cv~C~r~ldgipFtvd~~n~v~Cv~dfh~kfAPrCs~C~~PI~P~~G~--- 410 (468)
T KOG1701|consen 336 KCNKCGEPIMDRIL--RALGKAYHPGCFTCVVCARCLDGIPFTVDSQNNVYCVPDFHKKFAPRCSVCGNPILPRDGK--- 410 (468)
T ss_pred HHhhhhhHHHHHHH--HhcccccCCCceEEEEeccccCCccccccCCCceeeehhhhhhcCcchhhccCCccCCCCC---
Confidence 37777542 1222 3577888887774 2222 23456787663 99999876432211
Q ss_pred CCceeecccccccccccccccC
Q 001107 894 DGSVLICHQCELKYHRKCLQNG 915 (1156)
Q Consensus 894 ~g~ll~CdqCer~YH~~CL~~~ 915 (1156)
.+.+.--.=+|-||+.|..-.
T Consensus 411 -~etvRvvamdr~fHv~CY~CE 431 (468)
T KOG1701|consen 411 -DETVRVVAMDRDFHVNCYKCE 431 (468)
T ss_pred -cceEEEEEccccccccceehh
Confidence 112222234678898887654
No 142
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=78.67 E-value=3.4 Score=38.97 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=45.8
Q ss_pred CCCCCCEEEEEeCC-CeEEEEEEEecC---CCceEEEEeCCCCCeEEEecCCcccccccc
Q 001107 110 SLPFGLCVDVYYNE-AWWEGVIFDLED---GSAERRIFFPDLGDEMTVGIDSLRITQDWD 165 (1156)
Q Consensus 110 ~~~vGd~VDa~~~d-gWWeGvV~~v~~---g~~~~~V~Fpgegde~~~~~~dLRp~~dW~ 165 (1156)
.|.+||.|=|=..| -||.|.|.+..+ ....|.|+|-|+++.--+..++|.|-.+..
T Consensus 2 ~f~~GdlVwaK~kGyp~WPa~I~~~~~~~~~~~~~~V~FfGt~~~a~v~~~~l~pf~~~~ 61 (83)
T cd05834 2 QFKAGDLVFAKVKGYPAWPARVDEPEDWKPPGKKYPVYFFGTHETAFLKPEDLFPYTENK 61 (83)
T ss_pred CCCCCCEEEEecCCCCCCCEEEecccccCCCCCEEEEEEeCCCCEeEECHHHceecccch
Confidence 58899999986555 999999999753 134799999999998888888888877754
No 143
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=78.60 E-value=0.52 Score=44.42 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=32.1
Q ss_pred CCceEcCCCCCeeeecceeecCCCCCcCCCceeEccCCcchhhhh
Q 001107 759 RDGIKCKCCGKVYTLSGFEDHAGSTYCNPASHIFLQDGRSLLDCQ 803 (1156)
Q Consensus 759 ~~GI~C~cC~~~fs~S~FE~HAG~~~~~P~~~I~L~dGkSL~~c~ 803 (1156)
...|.|. +++|||++||.|+|....+.|+.-+..+|.+|...+
T Consensus 34 ~kCI~~~--g~~~TP~eFE~~~G~~~sK~WK~SIr~~g~~L~~li 76 (82)
T PF01342_consen 34 GKCIQCE--GRWFTPSEFERHGGKGSSKDWKRSIRCGGEPLGKLI 76 (82)
T ss_dssp SS-EEET--TEEE-HHHHHHHHTTCTCS-HHHHSEETTEEHHHHH
T ss_pred CceEeeC--CcEECHHHHHhhcCcccCCCCCccEEECCEEHHHHH
Confidence 3345554 899999999999999888888887777999986543
No 144
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=78.50 E-value=1.2 Score=53.34 Aligned_cols=41 Identities=27% Similarity=0.637 Sum_probs=32.4
Q ss_pred CCccCCCCcccCCCCCCCCccccccCCceeeccccccccccccccc
Q 001107 869 DWFCPSCCCSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQN 914 (1156)
Q Consensus 869 ~W~Cp~C~C~iCg~~~~~~~~~~~~~g~ll~CdqCer~YH~~CL~~ 914 (1156)
+-||..|.|.+|++.+...+ +-..+.|+-|+++.|..|.=.
T Consensus 123 ~gFC~~C~C~iC~kfD~~~n-----~~~Wi~Cd~CgH~cH~dCALr 163 (446)
T PF07227_consen 123 PGFCRRCMCCICSKFDDNKN-----TCSWIGCDVCGHWCHLDCALR 163 (446)
T ss_pred CCccccCCccccCCcccCCC-----CeeEEeccCCCceehhhhhcc
Confidence 46899999999988654322 344799999999999999644
No 145
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=78.17 E-value=4.1 Score=36.24 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=40.5
Q ss_pred CCCCCEEEEEeCC-CeEEEEEEEecC----------CCceEEEEeCCCCCeEEEecCCccc
Q 001107 111 LPFGLCVDVYYNE-AWWEGVIFDLED----------GSAERRIFFPDLGDEMTVGIDSLRI 160 (1156)
Q Consensus 111 ~~vGd~VDa~~~d-gWWeGvV~~v~~----------g~~~~~V~Fpgegde~~~~~~dLRp 160 (1156)
|++||.|=|=..| .||.|.|+.-.. ....|.|+|-|+++..-++.++|.|
T Consensus 1 f~~GdlVwaK~~G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~awv~~~~l~p 61 (63)
T smart00293 1 FKPGDLVWAKMKGFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGDKDTAWISSSKLFP 61 (63)
T ss_pred CCCCCEEEEECCCCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCCCCEEEECccceee
Confidence 5689999997777 999999987531 1236999999999998888888876
No 146
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=78.01 E-value=1.6 Score=42.49 Aligned_cols=69 Identities=26% Similarity=0.633 Sum_probs=44.5
Q ss_pred cccccCCCCceeecCCCCCccccCCCC-CC----------------CCCCCCCccCCCCcccCCCCCCCCccccccCCce
Q 001107 835 KCSVCHFGGELLLCDRCPSSFHRNCVG-LE----------------DVPDGDWFCPSCCCSICGNSNSREEVEDVVDGSV 897 (1156)
Q Consensus 835 ~C~vC~dgGeLl~CD~Cp~afH~~CL~-l~----------------~vP~g~W~Cp~C~C~iCg~~~~~~~~~~~~~g~l 897 (1156)
.|.+|...|..+.-..-..-.|..|.- .+ .++...| .=.|.+|++.. |..
T Consensus 2 ~C~lC~~~~Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~---~~~C~iC~~~~----------G~~ 68 (110)
T PF13832_consen 2 SCVLCPKRGGALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRF---KLKCSICGKSG----------GAC 68 (110)
T ss_pred ccEeCCCCCCcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhc---CCcCcCCCCCC----------cee
Confidence 378888765544444456678888874 11 1111111 11377887762 668
Q ss_pred eeccc--ccccccccccccCC
Q 001107 898 LICHQ--CELKYHRKCLQNGA 916 (1156)
Q Consensus 898 l~Cdq--Cer~YH~~CL~~~~ 916 (1156)
+.|.. |...||+.|....+
T Consensus 69 i~C~~~~C~~~fH~~CA~~~g 89 (110)
T PF13832_consen 69 IKCSHPGCSTAFHPTCARKAG 89 (110)
T ss_pred EEcCCCCCCcCCCHHHHHHCC
Confidence 99999 99999999998765
No 147
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=77.16 E-value=1.7 Score=52.88 Aligned_cols=46 Identities=26% Similarity=0.542 Sum_probs=32.6
Q ss_pred cCCCcccccccCCCCceeecCCCCCccccCCCCCCCCCCCCCccCCC
Q 001107 829 QGENDYKCSVCHFGGELLLCDRCPSSFHRNCVGLEDVPDGDWFCPSC 875 (1156)
Q Consensus 829 ~~~ndd~C~vC~dgGeLl~CD~Cp~afH~~CL~l~~vP~g~W~Cp~C 875 (1156)
...+.++|.+|.+||.+++|+.|..++|..|... ..++..|.|..|
T Consensus 85 ~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~-~~~~c~~~~~d~ 130 (463)
T KOG1081|consen 85 PKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPA-QLEKCSKRCTDC 130 (463)
T ss_pred cCCCcchhccccCCCccceeccccccccccCcCc-cCcccccCCcce
Confidence 4557788999999999999997777777777642 244444554443
No 148
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=76.91 E-value=4.8 Score=38.75 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=38.1
Q ss_pred cCCCCCccccEEEEEEeCC-EEEEEEEEEEec-----------------------CceEEEeEeeeecCccCCChhHHHH
Q 001107 1016 MLNRLNFQGFYTVLLERNE-ELVTVATVRIFG-----------------------EKAAEIPLVGTRFQYRRLGMCRILM 1071 (1156)
Q Consensus 1016 ~~~r~df~Gfy~~VL~~~~-e~Vs~Arlri~g-----------------------~~~AEIp~VAt~~~yRgqG~Gr~Lm 1071 (1156)
+.+++|-... |+++..++ ++|||.||.... ..++||.|+||.++||+...-..|.
T Consensus 22 e~D~fD~~~~-h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 22 ERDEFDEHSV-HLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred cccCCCCCcc-EEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 4566774444 44444444 599999885422 2678999999999999987766653
No 149
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=76.33 E-value=5.6 Score=40.80 Aligned_cols=71 Identities=15% Similarity=0.059 Sum_probs=54.4
Q ss_pred cCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCc----hhhHHHhhccCCcEEcChHHHhccc
Q 001107 1046 GEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAI----PTVLKTWTTSFGFKRMTASERVQLV 1116 (1156)
Q Consensus 1046 g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~----~~A~~fw~~klGF~~~~~~~~~~~~ 1116 (1156)
-+.+.-|-||.|....||.|++|+|-+.+-..+..-|...|++-.- ..|-..+-..|||..+++.+...+.
T Consensus 81 Ye~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ihggk 155 (167)
T COG3818 81 YENFFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIHGGK 155 (167)
T ss_pred CCceEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEEecch
Confidence 3556667888888889999999999999999999999999887322 1233344448999999987655443
No 150
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=75.99 E-value=5.2 Score=41.85 Aligned_cols=58 Identities=12% Similarity=0.156 Sum_probs=41.7
Q ss_pred eEEEeEeeeecCccCCChhHHHHHHHHHHHHHc-CCcEEEecC--c-hhhHHHhhccCCcEEc
Q 001107 1049 AAEIPLVGTRFQYRRLGMCRILMNELEKRLMEL-GVEKLILPA--I-PTVLKTWTTSFGFKRM 1107 (1156)
Q Consensus 1049 ~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~l-gV~~LvL~A--~-~~A~~fw~~klGF~~~ 1107 (1156)
.+|+..+---|..||+|+|+..|.++..++.+. ++.+..+.. + .-.+.++. ||+|.-+
T Consensus 107 ~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFk-k~~f~q~ 168 (185)
T KOG4135|consen 107 TGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFK-KFLFTQV 168 (185)
T ss_pred eeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHH-Hhhheee
Confidence 357777777899999999999999999887654 444444333 2 23467777 8999764
No 151
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=75.37 E-value=4.6 Score=38.33 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=43.8
Q ss_pred CCCCCEEEEEeCC-CeEEEEEEEec-------CCCceEEEEeCCCCCeEEEecCCcccccccc
Q 001107 111 LPFGLCVDVYYNE-AWWEGVIFDLE-------DGSAERRIFFPDLGDEMTVGIDSLRITQDWD 165 (1156)
Q Consensus 111 ~~vGd~VDa~~~d-gWWeGvV~~v~-------~g~~~~~V~Fpgegde~~~~~~dLRp~~dW~ 165 (1156)
|++||.|=|=..| -||.|.|++.. .....|.|+|-|+++.--+..++|.|-.+..
T Consensus 1 f~~GDlVwaK~~g~P~WPa~V~~~~~~~~~~~~~~~~~~V~FFG~~~~~wv~~~~l~pF~~~~ 63 (86)
T cd05836 1 LKLGDLVWAKMKGFPPWPGRIVKPPKDLKKPRGKAKCFFVFFFGSENHAWIKEENIKPYHEHK 63 (86)
T ss_pred CCCCCEEEEeCCCCCCCCEEEechhhhcccccCCCCeEEEEEeCCCCEEEECHHhCeechhhH
Confidence 5789999886555 99999998732 1113699999999998889999999988875
No 152
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=75.02 E-value=3.2 Score=48.19 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=41.7
Q ss_pred cCccCCChhHHHHHHHHHHHHHc-CCcEEEecCchhhHHHhhccCCcEEcChH
Q 001107 1059 FQYRRLGMCRILMNELEKRLMEL-GVEKLILPAIPTVLKTWTTSFGFKRMTAS 1110 (1156)
Q Consensus 1059 ~~yRgqG~Gr~Lm~aIE~~l~~l-gV~~LvL~A~~~A~~fw~~klGF~~~~~~ 1110 (1156)
..||.||+|.+||++.|+.|++. |-.+|-+-+......+|. ||||..-++-
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~-klGY~LdGPY 548 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYR-KLGYELDGPY 548 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHH-hhCeeecChh
Confidence 35899999999999999999864 555676666777888999 9999986653
No 153
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=74.76 E-value=5.3 Score=39.02 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=39.0
Q ss_pred EeCCEEEEEEEEEEec--CceEEEeEeeeecCccCCChhHHHHHHHHHH
Q 001107 1031 ERNEELVTVATVRIFG--EKAAEIPLVGTRFQYRRLGMCRILMNELEKR 1077 (1156)
Q Consensus 1031 ~~~~e~Vs~Arlri~g--~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~ 1077 (1156)
|.++...|+|-+..-+ .+++.|-.+||.+..||+|+++.|+++|-+.
T Consensus 14 y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d 62 (99)
T cd04264 14 YLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRD 62 (99)
T ss_pred EEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhh
Confidence 5556677888776544 5889999999999999999999999988755
No 154
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=73.16 E-value=11 Score=33.41 Aligned_cols=40 Identities=33% Similarity=0.439 Sum_probs=28.2
Q ss_pred CCCCCCCCCEEEEEeCCCCccceEEEEEEEEecC-CCce-EEeCC
Q 001107 18 GQRKLPVGERVEVRSDEDGFLGSWHAGTVIASSS-DCRT-VKYDH 60 (1156)
Q Consensus 18 ~~~~fkvGd~VEV~s~eeG~~GsWF~AtVi~~~~-~~~~-V~Y~d 60 (1156)
+.++|..|+.|.|+=-.+ ..||.|+|++.+. .+.| |.|.|
T Consensus 2 p~~k~~~Ge~V~~rWP~s---~lYYe~kV~~~d~~~~~y~V~Y~D 43 (55)
T PF09465_consen 2 PSRKFAIGEVVMVRWPGS---SLYYEGKVLSYDSKSDRYTVLYED 43 (55)
T ss_dssp SSSSS-SS-EEEEE-TTT---S-EEEEEEEEEETTTTEEEEEETT
T ss_pred CcccccCCCEEEEECCCC---CcEEEEEEEEecccCceEEEEEcC
Confidence 468899999999994433 3699999999765 4455 99986
No 155
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=72.69 E-value=16 Score=37.21 Aligned_cols=87 Identities=11% Similarity=-0.021 Sum_probs=58.5
Q ss_pred EEEEeCCEEEEEEEEEE--ecC--ceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCC
Q 001107 1028 VLLERNEELVTVATVRI--FGE--KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFG 1103 (1156)
Q Consensus 1028 ~VL~~~~e~Vs~Arlri--~g~--~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klG 1103 (1156)
.+..-+|.||+-+.+-- +.. --.-|.=+=+...|||+||||+...+|-...+. -.+-.+++--.-|..||+ ++-
T Consensus 40 ~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~g-~w~Va~i~EN~PA~~fwK-~~~ 117 (143)
T COG5628 40 WLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAWG-VWQVATVRENTPARAFWK-RVA 117 (143)
T ss_pred eEEEECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhhc-eEEEEEeccCChhHHHHH-hhh
Confidence 34567889999886632 211 001133344556799999999999999887654 456678888899999999 777
Q ss_pred cEE-cChHHHhccc
Q 001107 1104 FKR-MTASERVQLV 1116 (1156)
Q Consensus 1104 F~~-~~~~~~~~~~ 1116 (1156)
+.. +..++....+
T Consensus 118 ~t~~i~~E~r~d~~ 131 (143)
T COG5628 118 ETYPVVEEDRQDAR 131 (143)
T ss_pred cccccchhhhhccc
Confidence 754 4444444443
No 156
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=69.67 E-value=3.1 Score=36.50 Aligned_cols=37 Identities=27% Similarity=0.916 Sum_probs=28.9
Q ss_pred CCCcccCCCCCCCCccccccCCceeecccccccccccccccCCc
Q 001107 874 SCCCSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNGAT 917 (1156)
Q Consensus 874 ~C~C~iCg~~~~~~~~~~~~~g~ll~CdqCer~YH~~CL~~~~~ 917 (1156)
.++|.+||+.... .+.++.|..|...||..|....+.
T Consensus 5 ~~~C~~Cg~~~~~-------~dDiVvCp~CgapyHR~C~~~~g~ 41 (54)
T PF14446_consen 5 GCKCPVCGKKFKD-------GDDIVVCPECGAPYHRDCWEKAGG 41 (54)
T ss_pred CccChhhCCcccC-------CCCEEECCCCCCcccHHHHhhCCc
Confidence 4578999987642 245899999999999999876543
No 157
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=67.03 E-value=8.1 Score=41.38 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=46.6
Q ss_pred eEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCC
Q 001107 1049 AAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFG 1103 (1156)
Q Consensus 1049 ~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klG 1103 (1156)
+||+.+.||+++.+|.|++..| .++--.|++|||.--+---+......++ +|+
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~-R~~ 137 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVE-RLC 137 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHH-HHh
Confidence 6899999999999999999976 6888999999999988877777777777 565
No 158
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=65.59 E-value=7.6 Score=36.03 Aligned_cols=39 Identities=26% Similarity=0.476 Sum_probs=32.4
Q ss_pred hhcCceEEeecCCCC----CcceeeeCCCCcccchHHHHHHHH
Q 001107 555 SAIGWVFKYKIGPNA----KRNLYHFSPGGKSYFSLRSACRAC 593 (1156)
Q Consensus 555 ~~~GW~~~~~~~~~~----~~~~~y~sP~g~~~~sl~~ac~~~ 593 (1156)
+-.||+-+...+++| +.+..|+||.|+.+-|....=+-+
T Consensus 11 Lp~GW~re~~~R~~g~~~~~~dv~Y~sP~Gk~~RS~~eV~~yL 53 (77)
T PF01429_consen 11 LPDGWKREVVVRKSGSSAGKKDVYYYSPCGKRFRSKKEVVRYL 53 (77)
T ss_dssp STTT-EEEEEESSSSTTTTSEEEEEEETTSEEESSHHHHHHHH
T ss_pred CCCCCEEEEEEecCCCcCCceEEEEECCCCCEEeCHHHHHHHH
Confidence 457999999988886 568999999999999998877665
No 159
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=65.02 E-value=18 Score=31.41 Aligned_cols=39 Identities=21% Similarity=0.461 Sum_probs=30.5
Q ss_pred CCCCCEEEEEe-CCCeEEEEEEEecCC--CceEEEEeCCCCC
Q 001107 111 LPFGLCVDVYY-NEAWWEGVIFDLEDG--SAERRIFFPDLGD 149 (1156)
Q Consensus 111 ~~vGd~VDa~~-~dgWWeGvV~~v~~g--~~~~~V~Fpgegd 149 (1156)
|.+|+.|-+.+ ++-|.++.|+++... ..+|.|.|.|-+.
T Consensus 1 ~~vG~~v~~~~~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nk 42 (55)
T PF11717_consen 1 FEVGEKVLCKYKDGQWYEAKILDIREKNGEPEYYVHYQGWNK 42 (55)
T ss_dssp --TTEEEEEEETTTEEEEEEEEEEEECTTCEEEEEEETTSTG
T ss_pred CCcCCEEEEEECCCcEEEEEEEEEEecCCCEEEEEEcCCCCC
Confidence 57899999999 999999999997432 3479999988543
No 160
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=64.57 E-value=20 Score=41.41 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=61.0
Q ss_pred EEEE-eCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEecCchh--hHHHhhccCCc
Q 001107 1028 VLLE-RNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPT--VLKTWTTSFGF 1104 (1156)
Q Consensus 1028 ~VL~-~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~--A~~fw~~klGF 1104 (1156)
++++ .+|++||++.+..++ +.+.....|+.+++|+.+-+-.|+-.+.+.+++.|++.+-+..... -+..|+.+|||
T Consensus 198 ~~a~~~~g~~va~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~ 276 (330)
T TIGR03019 198 LTVRLGDGVVASAVLSFYFR-DEVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGF 276 (330)
T ss_pred EEEEeCCCCEEEEEEEEEeC-CEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCC
Confidence 4445 688999887765554 4455568899999999999999999999999999999999976532 23345557899
Q ss_pred EEcC
Q 001107 1105 KRMT 1108 (1156)
Q Consensus 1105 ~~~~ 1108 (1156)
++..
T Consensus 277 ~~~~ 280 (330)
T TIGR03019 277 EPQP 280 (330)
T ss_pred eecc
Confidence 8744
No 161
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=63.42 E-value=17 Score=34.45 Aligned_cols=50 Identities=18% Similarity=0.132 Sum_probs=32.9
Q ss_pred CCCCCCCCCEEEEEeCCCCccceEEEEEEE-EecCCCceEEeCCcccCCCCCCceEEEEcc
Q 001107 18 GQRKLPVGERVEVRSDEDGFLGSWHAGTVI-ASSSDCRTVKYDHLLTDAGDDNLVDIVCVS 77 (1156)
Q Consensus 18 ~~~~fkvGd~VEV~s~eeG~~GsWF~AtVi-~~~~~~~~V~Y~dl~dddg~~~L~E~V~~s 77 (1156)
......+|..+=+....+| .||||+|. ...++...|.|-|+- -.++|..+
T Consensus 48 ~~~~~~~~~~~~~~~~~~~---~w~Ra~I~~~~~~~~~~V~~iD~G-------~~~~v~~~ 98 (121)
T PF00567_consen 48 PSPESNPGEGCLCVVSEDG---RWYRAVITVDIDENQYKVFLIDYG-------NTEKVSAS 98 (121)
T ss_dssp TCST--TTEEEEEEETTTS---EEEEEEEEEEECTTEEEEEETTTT-------EEEEEEGG
T ss_pred CccccccCCEEEEEEecCC---ceeeEEEEEecccceeEEEEEecC-------ceEEEcHH
Confidence 3456667777777766554 99999993 444444459999882 46778763
No 162
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=63.24 E-value=27 Score=37.12 Aligned_cols=68 Identities=19% Similarity=0.317 Sum_probs=51.4
Q ss_pred CCccccEEEEEEe--CCEEEE-----EEEEEEecC--ceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEE
Q 001107 1020 LNFQGFYTVLLER--NEELVT-----VATVRIFGE--KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLI 1087 (1156)
Q Consensus 1020 ~df~Gfy~~VL~~--~~e~Vs-----~Arlri~g~--~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~Lv 1087 (1156)
..|...||+.+.. ++++|| -+.+|+.+. +.+||=|++|++.+|.+++.=.|+.+|=+.+...|+-.-+
T Consensus 72 Pg~~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qAv 148 (162)
T PF01233_consen 72 PGWKKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQAV 148 (162)
T ss_dssp TT--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEE
T ss_pred cCCccceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceeee
Confidence 4455667777764 577776 367888765 7889999999999999999999999999999888876543
No 163
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=62.43 E-value=9.4 Score=46.35 Aligned_cols=53 Identities=28% Similarity=0.327 Sum_probs=41.0
Q ss_pred CCCCCCCCCEEEEEeCCCCccceEEEEEEEEecCC--------CceEEeCCcccCCCCCCceEEEEccc
Q 001107 18 GQRKLPVGERVEVRSDEDGFLGSWHAGTVIASSSD--------CRTVKYDHLLTDAGDDNLVDIVCVSS 78 (1156)
Q Consensus 18 ~~~~fkvGd~VEV~s~eeG~~GsWF~AtVi~~~~~--------~~~V~Y~dl~dddg~~~L~E~V~~s~ 78 (1156)
....|.+|++|=|... +-|.|+.|+||+.... .+||-|..+ ..+|-|||..++
T Consensus 50 ~~~~~~VGekVla~~~---~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~-----nrRlDEWV~~~r 110 (450)
T PLN00104 50 VMLPLEVGTRVMCRWR---FDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEF-----NRRLDEWVKLEQ 110 (450)
T ss_pred ccceeccCCEEEEEEC---CCCCEEEEEEEEEeccCCCCCCCceEEEEEecC-----CccHhhccCHhh
Confidence 4567999999999953 4478999999997642 255999877 457889999865
No 164
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=61.62 E-value=5.4 Score=42.44 Aligned_cols=36 Identities=28% Similarity=0.799 Sum_probs=27.1
Q ss_pred cccCCCCCCCCccccccCCceeecccccccccccccccCCc
Q 001107 877 CSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNGAT 917 (1156)
Q Consensus 877 C~iCg~~~~~~~~~~~~~g~ll~CdqCer~YH~~CL~~~~~ 917 (1156)
|..|+....+ ..-|.|+.|..|..+||..||.+...
T Consensus 2 C~~C~~~g~~-----~~kG~Lv~CQGCs~sYHk~CLG~Rs~ 37 (175)
T PF15446_consen 2 CDTCGYEGDD-----RNKGPLVYCQGCSSSYHKACLGPRSQ 37 (175)
T ss_pred cccccCCCCC-----ccCCCeEEcCccChHHHhhhcCCccc
Confidence 6677554322 12478999999999999999998763
No 165
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=61.43 E-value=13 Score=36.47 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=36.3
Q ss_pred EeCCEEEEEEEEEEec-CceEEEeEeeeecCccCCChhHHHHHHHHHHH
Q 001107 1031 ERNEELVTVATVRIFG-EKAAEIPLVGTRFQYRRLGMCRILMNELEKRL 1078 (1156)
Q Consensus 1031 ~~~~e~Vs~Arlri~g-~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l 1078 (1156)
|.++..=++|-+..-. .+++.|-.+||.+..||+|+++.|+++|-+..
T Consensus 15 y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 15 YLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred EEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 3344444566554333 47899999999999999999999999887653
No 166
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=61.28 E-value=3.5 Score=49.36 Aligned_cols=66 Identities=30% Similarity=0.558 Sum_probs=43.8
Q ss_pred CcccccccCCCC----ceeecCCCCCccccCCCCCCCCCCCCCccCCCC------------cccCCCCCCCCccccccCC
Q 001107 832 NDYKCSVCHFGG----ELLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCC------------CSICGNSNSREEVEDVVDG 895 (1156)
Q Consensus 832 ndd~C~vC~dgG----eLl~CD~Cp~afH~~CL~l~~vP~g~W~Cp~C~------------C~iCg~~~~~~~~~~~~~g 895 (1156)
.-..|.||-..- ..|+--.|.-+||..|+. .-++-.||-|+ |..||.. .
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~----~w~~~scpvcR~~q~p~~ve~~~c~~c~~~-----------~ 238 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLM----KWWDSSCPVCRYCQSPSVVESSLCLACGCT-----------E 238 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHh----hcccCcChhhhhhcCcchhhhhhhhhhccc-----------c
Confidence 345799998532 256667788999999994 23344677765 5555543 2
Q ss_pred ceeecccccccccccccccC
Q 001107 896 SVLICHQCELKYHRKCLQNG 915 (1156)
Q Consensus 896 ~ll~CdqCer~YH~~CL~~~ 915 (1156)
.+..|--|+ |++|-+..
T Consensus 239 ~LwicliCg---~vgcgrY~ 255 (493)
T KOG0804|consen 239 DLWICLICG---NVGCGRYK 255 (493)
T ss_pred cEEEEEEcc---ceeccccc
Confidence 378888886 56776654
No 167
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=60.64 E-value=5.7 Score=43.29 Aligned_cols=23 Identities=17% Similarity=0.671 Sum_probs=18.8
Q ss_pred ccCCceeeccccccccccccccc
Q 001107 892 VVDGSVLICHQCELKYHRKCLQN 914 (1156)
Q Consensus 892 ~~~g~ll~CdqCer~YH~~CL~~ 914 (1156)
|.......|..|...||..|...
T Consensus 167 F~~~~~~~C~~C~~v~H~~C~~~ 189 (202)
T PF13901_consen 167 FQIDTTVRCPKCKSVFHKSCFRK 189 (202)
T ss_pred CCCCCeeeCCcCccccchhhcCC
Confidence 33456899999999999999873
No 168
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=60.60 E-value=33 Score=37.40 Aligned_cols=84 Identities=13% Similarity=0.084 Sum_probs=49.1
Q ss_pred hhhhhHHHHHhhcccccccCCccchhHHHHHhhhcccCCCCCcccc--EEEEEEeCCE--EEEEEEEEEecCceEEEeEe
Q 001107 980 SKLNIAHRVMHECFEPVHEPYSSGDLAEDVLFSRWSMLNRLNFQGF--YTVLLERNEE--LVTVATVRIFGEKAAEIPLV 1055 (1156)
Q Consensus 980 SkLa~AL~vm~EcF~Pi~d~rtg~Dli~~~vy~~gs~~~r~df~Gf--y~~VL~~~~e--~Vs~Arlri~g~~~AEIp~V 1055 (1156)
....+.|-.+-.+|..-+- --+|..+| |.+...+++. +||-=+=--...+---+--|
T Consensus 26 ~~yCqnLcLlaKLFLd~Kt-------------------lyydv~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~~NLsCI 86 (188)
T PF01853_consen 26 KLYCQNLCLLAKLFLDHKT-------------------LYYDVDPFLFYVLTEKDDDGFHIVGYFSKEKESWDNNNLSCI 86 (188)
T ss_dssp HHHHHHHHHHHHTT-SSGC-------------------CTT-STTEEEEEEEEEETTEEEEEEEEEEESS-TT-EEESEE
T ss_pred chHHHHHHHHHHHHhhCeE-------------------EEeecCceEEEEEEEecCccceeEEEEEEEecccCCeeEeeh
Confidence 4678889999999984431 11333444 4444344443 33322211112233367789
Q ss_pred eeecCccCCChhHHHHHHHHHHHHHcC
Q 001107 1056 GTRFQYRRLGMCRILMNELEKRLMELG 1082 (1156)
Q Consensus 1056 At~~~yRgqG~Gr~Lm~aIE~~l~~lg 1082 (1156)
-|.|.||++|+|+.|++.-=.+.+..|
T Consensus 87 l~lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 87 LTLPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp EE-GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred hhcchhhhcchhhhhhhhHHHHhhccC
Confidence 999999999999999987666666544
No 169
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=58.95 E-value=5 Score=35.27 Aligned_cols=28 Identities=36% Similarity=1.062 Sum_probs=24.4
Q ss_pred ccccccCC----CCceeecCCCCCccccCCCC
Q 001107 834 YKCSVCHF----GGELLLCDRCPSSFHRNCVG 861 (1156)
Q Consensus 834 d~C~vC~d----gGeLl~CD~Cp~afH~~CL~ 861 (1156)
..|.+|+. +++++.|..|...||..|..
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 35999986 67899999999999999983
No 170
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=57.86 E-value=17 Score=34.58 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=42.7
Q ss_pred CCCCCEEEEEeCC-CeEEEEEEEecCCCceEEEEeCC-CCCeEEEecCCcccccccc
Q 001107 111 LPFGLCVDVYYNE-AWWEGVIFDLEDGSAERRIFFPD-LGDEMTVGIDSLRITQDWD 165 (1156)
Q Consensus 111 ~~vGd~VDa~~~d-gWWeGvV~~v~~g~~~~~V~Fpg-egde~~~~~~dLRp~~dW~ 165 (1156)
..+||.|=|=..| -||.+.|.+..+ +.|.|+|-| +.+.--+..++|.|-..-.
T Consensus 7 ~~p~dLVwAK~kGyp~WPAkV~~~~~--~~~~V~FFG~t~~~a~v~~~~i~~~~~~~ 61 (83)
T cd05841 7 RPPHELVWAKLKGFPYWPAKVMRVED--NQVDVRFFGGQHDRAWIPSNNIQPISTEI 61 (83)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeecCC--CeEEEEEcCCCCCeEEEehHHeeehhhhh
Confidence 3468888886666 999999998765 469999998 9998888888888876554
No 171
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=56.77 E-value=18 Score=34.98 Aligned_cols=76 Identities=14% Similarity=0.070 Sum_probs=50.6
Q ss_pred CCCCCEEEEEeCC-CeEEEEEEEe-------c-----CCCceEEEEeCCCCCeEEEecCCccccccccccccccccCCcE
Q 001107 111 LPFGLCVDVYYNE-AWWEGVIFDL-------E-----DGSAERRIFFPDLGDEMTVGIDSLRITQDWDEFKETWHHRGTW 177 (1156)
Q Consensus 111 ~~vGd~VDa~~~d-gWWeGvV~~v-------~-----~g~~~~~V~Fpgegde~~~~~~dLRp~~dW~~~~g~W~~~g~W 177 (1156)
|.+||.|=|=..| -||.|.|+.- + .....|-|.|-|+.+..-+...+|.|-.+=. ..+|....+-
T Consensus 1 f~~GDlVwaK~~GyPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FFg~~~~~Wv~~~~l~pl~~~~--~~~~l~~~~~ 78 (93)
T cd05840 1 FQPGDRVLAKVKGFPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFFPDGDYYWVPNKDLKPLTEEK--IAKFLKKPKR 78 (93)
T ss_pred CCCCCEEEEeCCCCCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEeCCCcEEEEChhhcccCCHHH--HHHHhhcCCC
Confidence 5689999886665 8999999862 1 1224699999998888888999998877211 1233334444
Q ss_pred EeehhhHhhhh
Q 001107 178 LFLELIEEHER 188 (1156)
Q Consensus 178 ~~l~~~e~~~~ 188 (1156)
..-.++..|+.
T Consensus 79 k~k~l~~ay~~ 89 (93)
T cd05840 79 KDKELIKAYKA 89 (93)
T ss_pred CCHHHHHHHHH
Confidence 44455666654
No 172
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=56.66 E-value=8.4 Score=35.59 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=23.4
Q ss_pred EEeEeeeecCccCCChhHHHHHHHHHH
Q 001107 1051 EIPLVGTRFQYRRLGMCRILMNELEKR 1077 (1156)
Q Consensus 1051 EIp~VAt~~~yRgqG~Gr~Lm~aIE~~ 1077 (1156)
=|.+|=|.+.+|++|++++||+++-+.
T Consensus 7 GI~RIWV~~~~RR~GIAt~Lld~ar~~ 33 (70)
T PF13880_consen 7 GISRIWVSPSHRRKGIATRLLDAAREN 33 (70)
T ss_pred EeEEEEeChhhhhhhHHHHHHHHHHHh
Confidence 367888999999999999999987654
No 173
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=55.73 E-value=12 Score=34.94 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=32.6
Q ss_pred hhcCceEEeecCCCC---CcceeeeCCCCcccchHHHHHHHH
Q 001107 555 SAIGWVFKYKIGPNA---KRNLYHFSPGGKSYFSLRSACRAC 593 (1156)
Q Consensus 555 ~~~GW~~~~~~~~~~---~~~~~y~sP~g~~~~sl~~ac~~~ 593 (1156)
+-.||+-+..+++++ +.+..|+||.|+.+-|+..+=+-+
T Consensus 7 lp~GW~r~~~~R~~gs~~k~DvyY~sP~Gkk~RS~~ev~~yL 48 (77)
T cd01396 7 LPPGWKRELVPRKSGSAGKFDVYYISPTGKKFRSKVELARYL 48 (77)
T ss_pred CCCCCEEEEEEecCCCCCcceEEEECCCCCEEECHHHHHHHH
Confidence 346999999999984 668999999999999888776555
No 174
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=55.40 E-value=17 Score=34.49 Aligned_cols=49 Identities=24% Similarity=0.321 Sum_probs=38.1
Q ss_pred CCCEEEEEeCCCeEEEEEEEecCCCceEEEEeCCCCCeEEEecCCccccc
Q 001107 113 FGLCVDVYYNEAWWEGVIFDLEDGSAERRIFFPDLGDEMTVGIDSLRITQ 162 (1156)
Q Consensus 113 vGd~VDa~~~dgWWeGvV~~v~~g~~~~~V~Fpgegde~~~~~~dLRp~~ 162 (1156)
.+..+=+..+++|.-|+|....++ ..+.|+|-+.|....+..++||+--
T Consensus 56 ~~~~~~~~~~~~w~Ra~I~~~~~~-~~~~V~~iD~G~~~~v~~~~l~~l~ 104 (121)
T PF00567_consen 56 EGCLCVVSEDGRWYRAVITVDIDE-NQYKVFLIDYGNTEKVSASDLRPLP 104 (121)
T ss_dssp EEEEEEETTTSEEEEEEEEEEECT-TEEEEEETTTTEEEEEEGGGEEE--
T ss_pred CEEEEEEecCCceeeEEEEEeccc-ceeEEEEEecCceEEEcHHHhhhhC
Confidence 355666677899999999443333 4799999999999999999999754
No 175
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=54.70 E-value=25 Score=40.54 Aligned_cols=83 Identities=11% Similarity=0.059 Sum_probs=49.1
Q ss_pred hhhhHHHHHhhcccccccCCccchhHHHHHhhhcccCCCCCccccEEEEEEeC----CEEEEEEEEEEecCceEEEeEee
Q 001107 981 KLNIAHRVMHECFEPVHEPYSSGDLAEDVLFSRWSMLNRLNFQGFYTVLLERN----EELVTVATVRIFGEKAAEIPLVG 1056 (1156)
Q Consensus 981 kLa~AL~vm~EcF~Pi~d~rtg~Dli~~~vy~~gs~~~r~df~Gfy~~VL~~~----~e~Vs~Arlri~g~~~AEIp~VA 1056 (1156)
...+-|-.|.-.|.-- .| --+|-..|.-+||... ..+||-=+=--...+---+--|-
T Consensus 102 ~yCqnLcLlaKLFLdh---Kt----------------lyyDV~~FlFYVl~e~d~~g~h~vGYFSKEK~s~~~nNLaCIl 162 (290)
T PLN03238 102 VYCQNLCLLAKLFLDH---KT----------------LYYDVDPFLFYVMTEVDDHGSHIVGYFSKEKVSAEDYNLACIL 162 (290)
T ss_pred hHHHHHHHHHHHhhcC---cc----------------ccccccceEEEEEEEecCCCcEEEEEeceeccccCCCcEEEEE
Confidence 4666777777777632 22 1234455665665533 24555221111111122377899
Q ss_pred eecCccCCChhHHHHHHHHHHHHHcC
Q 001107 1057 TRFQYRRLGMCRILMNELEKRLMELG 1082 (1156)
Q Consensus 1057 t~~~yRgqG~Gr~Lm~aIE~~l~~lg 1082 (1156)
|.|.||++|+|+.|++.-=++.+..|
T Consensus 163 tLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 163 TLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred ecChhhhccHhHhHHHHHhHHhhccC
Confidence 99999999999999977666655544
No 176
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=51.80 E-value=22 Score=32.98 Aligned_cols=43 Identities=30% Similarity=0.428 Sum_probs=34.2
Q ss_pred hhcccEEEEeeCCCC----cceeeeeCCCCceeehHHHHHHhhcccc
Q 001107 434 KHQNWKLECTRDEKG----TLRQRYISPDGKCYHSLRQVCLDLTETT 476 (1156)
Q Consensus 434 ~~~gw~i~~~~~~~~----~~r~ry~sp~~k~y~s~~~~~~~~~~~~ 476 (1156)
+--||+.|...-..| ..=--|.||.||.+.|..+|..=|....
T Consensus 11 Lp~GW~re~~~R~~g~~~~~~dv~Y~sP~Gk~~RS~~eV~~yL~~~~ 57 (77)
T PF01429_consen 11 LPDGWKREVVVRKSGSSAGKKDVYYYSPCGKRFRSKKEVVRYLKENP 57 (77)
T ss_dssp STTT-EEEEEESSSSTTTTSEEEEEEETTSEEESSHHHHHHHHTTSS
T ss_pred CCCCCEEEEEEecCCCcCCceEEEEECCCCCEEeCHHHHHHHHHhCC
Confidence 456999998855544 4556799999999999999999988754
No 177
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=50.47 E-value=43 Score=38.18 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=35.5
Q ss_pred cCCCCCCCCCEEEEEeCCCCccceEEEEEEEEecCCC--ceEEeCCcccCCCCCCceEEEEcc
Q 001107 17 CGQRKLPVGERVEVRSDEDGFLGSWHAGTVIASSSDC--RTVKYDHLLTDAGDDNLVDIVCVS 77 (1156)
Q Consensus 17 ~~~~~fkvGd~VEV~s~eeG~~GsWF~AtVi~~~~~~--~~V~Y~dl~dddg~~~L~E~V~~s 77 (1156)
.+...++|||.....--++| .||+|+|.++..+. +.|.|..+-+ .|.|.++
T Consensus 64 ~~~~~WkvGd~C~A~~s~Dg---~~Y~A~I~~i~~~~~~~~V~f~gYgn-------~e~v~l~ 116 (264)
T PF06003_consen 64 APNKKWKVGDKCMAVYSEDG---QYYPATIESIDEEDGTCVVVFTGYGN-------EEEVNLS 116 (264)
T ss_dssp TTTT---TT-EEEEE-TTTS---SEEEEEEEEEETTTTEEEEEETTTTE-------EEEEEGG
T ss_pred CcccCCCCCCEEEEEECCCC---CEEEEEEEEEcCCCCEEEEEEcccCC-------eEeeehh
Confidence 45678999999999977776 59999999998653 4599998833 4778774
No 178
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=49.12 E-value=7.7 Score=38.31 Aligned_cols=36 Identities=33% Similarity=0.940 Sum_probs=24.0
Q ss_pred CCCCCccccCCCC------C-CCCCCCCCccCCCC----cccCCCCC
Q 001107 849 DRCPSSFHRNCVG------L-EDVPDGDWFCPSCC----CSICGNSN 884 (1156)
Q Consensus 849 D~Cp~afH~~CL~------l-~~vP~g~W~Cp~C~----C~iCg~~~ 884 (1156)
..|...|=..||- + +.+.++.|.||.|+ |..|.+..
T Consensus 34 ~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk~ 80 (105)
T PF10497_consen 34 RGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRKR 80 (105)
T ss_pred ccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhccC
Confidence 3346667667764 1 23456789999987 77786654
No 179
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=48.48 E-value=10 Score=35.41 Aligned_cols=32 Identities=28% Similarity=0.795 Sum_probs=25.5
Q ss_pred CcccCCCCCCCCccccccCCceeeccc--ccccccccccccCCc
Q 001107 876 CCSICGNSNSREEVEDVVDGSVLICHQ--CELKYHRKCLQNGAT 917 (1156)
Q Consensus 876 ~C~iCg~~~~~~~~~~~~~g~ll~Cdq--Cer~YH~~CL~~~~~ 917 (1156)
.|.+|++.. |..+.|.. |.+.||..|....+.
T Consensus 38 ~C~~C~~~~----------Ga~i~C~~~~C~~~fH~~CA~~~~~ 71 (90)
T PF13771_consen 38 KCSICKKKG----------GACIGCSHPGCSRSFHVPCARKAGC 71 (90)
T ss_pred CCcCCCCCC----------CeEEEEeCCCCCcEEChHHHccCCe
Confidence 388887662 55789997 999999999988763
No 180
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=47.88 E-value=29 Score=30.93 Aligned_cols=41 Identities=27% Similarity=0.377 Sum_probs=33.2
Q ss_pred hcCceEEeecCCCC---CcceeeeCCCCcccchHHHHHHHHhcc
Q 001107 556 AIGWVFKYKIGPNA---KRNLYHFSPGGKSYFSLRSACRACLNG 596 (1156)
Q Consensus 556 ~~GW~~~~~~~~~~---~~~~~y~sP~g~~~~sl~~ac~~~~~~ 596 (1156)
-.||+-+..+++++ +.+..|+||.|+.+-|+...=+-+.++
T Consensus 7 p~GW~R~~~~r~~g~~~k~dv~Y~sP~Gk~~Rs~~ev~~yL~~~ 50 (62)
T cd00122 7 PPGWKRELVIRKSGSAGKGDVYYYSPCGKKLRSKPEVARYLEKT 50 (62)
T ss_pred CCCeEEEEEEcCCCCCCcceEEEECCCCceecCHHHHHHHHHhC
Confidence 46999999888874 668999999999888888776666443
No 181
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=45.17 E-value=13 Score=49.16 Aligned_cols=36 Identities=25% Similarity=0.639 Sum_probs=31.2
Q ss_pred CceeecccccccccccccccCCcchhccCCCCCcccCccch
Q 001107 895 GSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCE 935 (1156)
Q Consensus 895 g~ll~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfC~~~C~ 935 (1156)
+.++.|..|++.||..|..++ +.+.|...|-|. .|.
T Consensus 354 ~~~lc~Et~prvvhlEcv~hP----~~~~~s~~~e~e-vc~ 389 (1414)
T KOG1473|consen 354 GDLLCCETCPRVVHLECVFHP----RFAVPSAFWECE-VCN 389 (1414)
T ss_pred cceeecccCCceEEeeecCCc----cccCCCccchhh-hhh
Confidence 458999999999999999988 778999999986 365
No 182
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=45.01 E-value=1e+02 Score=31.62 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=49.7
Q ss_pred ccEEEEEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEe
Q 001107 1024 GFYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLIL 1088 (1156)
Q Consensus 1024 Gfy~~VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL 1088 (1156)
|=+++-.+.+|++||||.+-+....+.-|=.+ =+|++...++|...+-.-.++++++|.+.+-|
T Consensus 38 ~t~~~~~~~~~kLiav~v~D~l~~glSaVY~f-yDPd~~~~SlG~~~iL~eI~~a~~~~l~y~YL 101 (128)
T PF04377_consen 38 GTYHLEYRLDGKLIAVAVVDILPDGLSAVYTF-YDPDYSKRSLGTYSILREIELARELGLPYYYL 101 (128)
T ss_pred CCEEEEEEeCCeEEEEEEeecccchhhheeee-eCCCccccCcHHHHHHHHHHHHHHcCCCEEee
Confidence 34666677999999999999877666555443 37899999999987777777889999988654
No 183
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=44.41 E-value=28 Score=44.95 Aligned_cols=38 Identities=21% Similarity=0.487 Sum_probs=30.2
Q ss_pred CCCCCCCEEEEEeCCC------eEEEEEEEecCCC--------ceEEEEeCC
Q 001107 109 CSLPFGLCVDVYYNEA------WWEGVIFDLEDGS--------AERRIFFPD 146 (1156)
Q Consensus 109 ~~~~vGd~VDa~~~dg------WWeGvV~~v~~g~--------~~~~V~Fpg 146 (1156)
.+|..+|.--|||.|+ ||+|.|..+...+ +.|.|....
T Consensus 977 rnW~~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~ 1028 (1113)
T KOG0644|consen 977 RNWTCRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDN 1028 (1113)
T ss_pred hccccccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecC
Confidence 5899999999999998 9999999875433 346666654
No 184
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=43.20 E-value=11 Score=47.29 Aligned_cols=54 Identities=24% Similarity=0.686 Sum_probs=34.9
Q ss_pred cCCCC-----cccCCCCCCCCccccccCCceeecccccccccccccccCCcchhccCCCCCcccCccchhhHhh
Q 001107 872 CPSCC-----CSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCEEIFLG 940 (1156)
Q Consensus 872 Cp~C~-----C~iCg~~~~~~~~~~~~~g~ll~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfC~~~C~~i~~~ 940 (1156)
|..|. |.+|..+.. ..-|.......|..|...||..|+..... . ||+ |..+..+
T Consensus 504 C~lC~~~gfiCe~Cq~~~i---iyPF~~~~~~rC~~C~avfH~~C~~r~s~-------~----CPr-C~R~q~r 562 (580)
T KOG1829|consen 504 CDLCTGKGFICELCQHNDI---IYPFETRNTRRCSTCLAVFHKKCLRRKSP-------C----CPR-CERRQKR 562 (580)
T ss_pred chhhccCeeeeeeccCCCc---ccccccccceeHHHHHHHHHHHHHhccCC-------C----CCc-hHHHHHH
Confidence 66665 777722211 11233456789999999999999986421 1 775 8887654
No 185
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=42.88 E-value=35 Score=32.02 Aligned_cols=41 Identities=29% Similarity=0.454 Sum_probs=32.7
Q ss_pred hcccEEEEeeCCCC-cce--eeeeCCCCceeehHHHHHHhhccc
Q 001107 435 HQNWKLECTRDEKG-TLR--QRYISPDGKCYHSLRQVCLDLTET 475 (1156)
Q Consensus 435 ~~gw~i~~~~~~~~-~~r--~ry~sp~~k~y~s~~~~~~~~~~~ 475 (1156)
--||+-|...-..| ..+ --|.||.||..-|..||.+-|+.+
T Consensus 8 p~GW~r~~~~R~~gs~~k~DvyY~sP~Gkk~RS~~ev~~yL~~~ 51 (77)
T cd01396 8 PPGWKRELVPRKSGSAGKFDVYYISPTGKKFRSKVELARYLEKN 51 (77)
T ss_pred CCCCEEEEEEecCCCCCcceEEEECCCCCEEECHHHHHHHHHhC
Confidence 35999887766654 333 349999999999999999999885
No 186
>PTZ00064 histone acetyltransferase; Provisional
Probab=41.47 E-value=42 Score=41.41 Aligned_cols=83 Identities=12% Similarity=0.059 Sum_probs=49.8
Q ss_pred hhhhHHHHHhhcccccccCCccchhHHHHHhhhcccCCCCCccccEEEEEEeC----CEEEEEEEEEEecCceEEEeEee
Q 001107 981 KLNIAHRVMHECFEPVHEPYSSGDLAEDVLFSRWSMLNRLNFQGFYTVLLERN----EELVTVATVRIFGEKAAEIPLVG 1056 (1156)
Q Consensus 981 kLa~AL~vm~EcF~Pi~d~rtg~Dli~~~vy~~gs~~~r~df~Gfy~~VL~~~----~e~Vs~Arlri~g~~~AEIp~VA 1056 (1156)
...+-|-.|.-.|.-- .| =-+|...|.-+||..- -.+||-=+=-....+-.-+--|-
T Consensus 331 lYCQNLCLLAKLFLDh---KT----------------LYyDVdpFlFYVLtE~D~~G~HiVGYFSKEK~S~~~nNLACIL 391 (552)
T PTZ00064 331 GYAENLCYLAKLFLDH---KT----------------LQYDVEPFLFYIVTEVDEEGCHIVGYFSKEKVSLLHYNLACIL 391 (552)
T ss_pred hHHHHHHHHHHHhccC---cc----------------ccccccceEEEEEEEecCCCcEEEEEecccccCcccCceEEEE
Confidence 4677777777777632 22 1234556666666532 25555211111111122477899
Q ss_pred eecCccCCChhHHHHHHHHHHHHHcC
Q 001107 1057 TRFQYRRLGMCRILMNELEKRLMELG 1082 (1156)
Q Consensus 1057 t~~~yRgqG~Gr~Lm~aIE~~l~~lg 1082 (1156)
|.|.||++|||+.||+.-=.+.+..|
T Consensus 392 tLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 392 TLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred ecchhhhcchhhhhhhhhhhhhhhcC
Confidence 99999999999999976655555544
No 187
>PLN03239 histone acetyltransferase; Provisional
Probab=40.39 E-value=55 Score=38.84 Aligned_cols=83 Identities=11% Similarity=-0.028 Sum_probs=48.6
Q ss_pred hhhhHHHHHhhcccccccCCccchhHHHHHhhhcccCCCCCccccEEEEEEeC----CEEEEEEEEEEecCceEEEeEee
Q 001107 981 KLNIAHRVMHECFEPVHEPYSSGDLAEDVLFSRWSMLNRLNFQGFYTVLLERN----EELVTVATVRIFGEKAAEIPLVG 1056 (1156)
Q Consensus 981 kLa~AL~vm~EcF~Pi~d~rtg~Dli~~~vy~~gs~~~r~df~Gfy~~VL~~~----~e~Vs~Arlri~g~~~AEIp~VA 1056 (1156)
...+-|-.|.-.|.--+ | --+|-..|.-+||..- -.+||-=+=--...+---+--|-
T Consensus 160 ~yCQnLCLlaKLFLdhK---t----------------lyyDV~~FlFYVl~e~D~~g~h~vGYFSKEK~s~~~~NLaCIl 220 (351)
T PLN03239 160 IYCQNLCYIAKLFLDHK---T----------------LYFDVDPFLFYVLCEVDERGFHPVGYYSKEKYSDVGYNLACIL 220 (351)
T ss_pred HHHHHHHHHHHHhhcCc---c----------------eeccccceEEEEEEEecCCceEEEEEeeecccCCCCCceEEEE
Confidence 56777777777776332 1 1234456666666542 23444211111111112377899
Q ss_pred eecCccCCChhHHHHHHHHHHHHHcC
Q 001107 1057 TRFQYRRLGMCRILMNELEKRLMELG 1082 (1156)
Q Consensus 1057 t~~~yRgqG~Gr~Lm~aIE~~l~~lg 1082 (1156)
|.|.||++|+|+.||+.-=++.+..|
T Consensus 221 tLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 221 TFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred ecChhhhcchhhhhHhhhhHhhhhcC
Confidence 99999999999999976555555444
No 188
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=40.30 E-value=30 Score=32.38 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=30.5
Q ss_pred hcCceEEeecCCCC----CcceeeeCCCCcccchHHHHHHHH
Q 001107 556 AIGWVFKYKIGPNA----KRNLYHFSPGGKSYFSLRSACRAC 593 (1156)
Q Consensus 556 ~~GW~~~~~~~~~~----~~~~~y~sP~g~~~~sl~~ac~~~ 593 (1156)
-.||.-+..+++.| +.+..|+||.|+.+-|....=+-+
T Consensus 9 p~GW~R~~~~r~~g~~~~~~dV~Y~sP~GkklRs~~ev~~YL 50 (77)
T smart00391 9 PCGWRRETKQRKSGRSAGKFDVYYISPCGKKLRSKSELARYL 50 (77)
T ss_pred CCCcEEEEEEecCCCCCCcccEEEECCCCCeeeCHHHHHHHH
Confidence 46999998888875 679999999999888877665444
No 189
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=40.30 E-value=12 Score=34.23 Aligned_cols=28 Identities=32% Similarity=0.841 Sum_probs=11.4
Q ss_pred ccccccCCC----Cc--eeecC--CCCCccccCCCC
Q 001107 834 YKCSVCHFG----GE--LLLCD--RCPSSFHRNCVG 861 (1156)
Q Consensus 834 d~C~vC~dg----Ge--Ll~CD--~Cp~afH~~CL~ 861 (1156)
..|.+|... ++ .+.|+ .|...||..||.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~ 38 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLS 38 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHH
Confidence 358888752 33 58898 799999999996
No 190
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=40.28 E-value=20 Score=39.13 Aligned_cols=37 Identities=30% Similarity=0.916 Sum_probs=27.9
Q ss_pred cccccccCCCC--------ceeecCCCCCccccCCCCCCCCCCCCCccCCCC
Q 001107 833 DYKCSVCHFGG--------ELLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCC 876 (1156)
Q Consensus 833 dd~C~vC~dgG--------eLl~CD~Cp~afH~~CL~l~~vP~g~W~Cp~C~ 876 (1156)
...|.+|.+.+ ....|..|...||..|... =.||.|.
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-------~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-------KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-------CCCCCcH
Confidence 35699998653 3789999999999999952 1277764
No 191
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=40.15 E-value=31 Score=42.09 Aligned_cols=81 Identities=12% Similarity=0.018 Sum_probs=47.9
Q ss_pred hhhhHHHHHhhcccccccCCccchhHHHHHhhhcccCCCCCccccEEEEEEe----CCEEEEEEEEEEecCceEEEeEee
Q 001107 981 KLNIAHRVMHECFEPVHEPYSSGDLAEDVLFSRWSMLNRLNFQGFYTVLLER----NEELVTVATVRIFGEKAAEIPLVG 1056 (1156)
Q Consensus 981 kLa~AL~vm~EcF~Pi~d~rtg~Dli~~~vy~~gs~~~r~df~Gfy~~VL~~----~~e~Vs~Arlri~g~~~AEIp~VA 1056 (1156)
...+-|-.|--.|.-- .| =-+|...|.-+||.. +-.+||-=+=--...+-.-+--|-
T Consensus 253 ~yCqnLcLlaKLFLdh---Kt----------------lyydV~~FlFYvl~e~d~~g~h~vGyFSKEk~s~~~~NLaCIl 313 (450)
T PLN00104 253 VYCQNLCYLAKLFLDH---KT----------------LYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEEDYNLACIL 313 (450)
T ss_pred hHHHHHHHHHHHhhcC---cc----------------eeccccceEEEEEEEecCCCcEEEEEecccccCcCCCceEEEE
Confidence 5677777777777733 21 124445666666653 225666222111111222377899
Q ss_pred eecCccCCChhHHHHHHHHHHHHH
Q 001107 1057 TRFQYRRLGMCRILMNELEKRLME 1080 (1156)
Q Consensus 1057 t~~~yRgqG~Gr~Lm~aIE~~l~~ 1080 (1156)
|.|.||++|||+.||+.-=++.+.
T Consensus 314 tlP~yQrkGyG~~LI~~SYeLSr~ 337 (450)
T PLN00104 314 TLPPYQRKGYGKFLIAFSYELSKR 337 (450)
T ss_pred ecchhhhcchhheehhheehhhhc
Confidence 999999999999999654444333
No 192
>PF02820 MBT: mbt repeat; InterPro: IPR004092 The function of the malignant brain tumor (MBT) repeat is unknown, but is found in a number of nuclear proteins involved in transcriptional repression. The repeat contains a completely conserved glutamate at its amino terminus that may be important for function. The crystal structure of the two MBT repeats of human SCM-like 2 protein has been reported. Each repeat consists of an extended "arm" and a globular core. The arm of the first repeat packs against the core of the second repeat and vice versa. The structure of the core-interacting part of each arm consists of an N-terminal alpha-helix and a turn of 310 helix connected by a short beta-strand. The core consists of an Src homology 3-like five-stranded beta-barrel followed by a C-terminal alpha-helix and another short beta-strand. Each arm interacts with its partner core in a similar way, with the orientation of the N-terminal helix relative to the barrel varying slightly. There are also extensive interactions between the two barrels [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P0K_A 3F70_B 3CEY_A 2VYT_A 2BIV_A 1OI1_A 3OQ5_A 2RJE_B 2RJD_A 2RI3_A ....
Probab=40.11 E-value=77 Score=28.98 Aligned_cols=44 Identities=16% Similarity=0.104 Sum_probs=33.3
Q ss_pred EEEEEeCCCCccceEEEEEEEEecCCCceEEeCCcccCCCCCCceEEEEcc
Q 001107 27 RVEVRSDEDGFLGSWHAGTVIASSSDCRTVKYDHLLTDAGDDNLVDIVCVS 77 (1156)
Q Consensus 27 ~VEV~s~eeG~~GsWF~AtVi~~~~~~~~V~Y~dl~dddg~~~L~E~V~~s 77 (1156)
++|+....+. ..+..|||+++.+....|+|+...++. ..|++..
T Consensus 2 kLEa~d~~~~--~~~~vAtV~~v~g~~l~v~~dg~~~~~-----d~w~~~~ 45 (73)
T PF02820_consen 2 KLEAVDPRNP--SLICVATVVKVCGGRLLVRYDGWDDDY-----DFWCHID 45 (73)
T ss_dssp EEEEEETTEC--CEEEEEEEEEEETTEEEEEETTSTGGG-----EEEEETT
T ss_pred eEEEECCCCC--CeEEEEEEEEEeCCEEEEEEcCCCCCc-----cEEEECC
Confidence 5788866543 357799999999988779999875543 6788873
No 193
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=38.28 E-value=26 Score=44.57 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=26.5
Q ss_pred eEEEeEeeeecCccCCChhHHHHHHHHHHHH
Q 001107 1049 AAEIPLVGTRFQYRRLGMCRILMNELEKRLM 1079 (1156)
Q Consensus 1049 ~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~ 1079 (1156)
-|.|-||||+|+|++.|||.+-++-+.++..
T Consensus 614 GaRIVRIAvhP~y~~MGYGsrAvqLL~~y~e 644 (1011)
T KOG2036|consen 614 GARIVRIAVHPEYQKMGYGSRAVQLLTDYFE 644 (1011)
T ss_pred CceEEEEEeccchhccCccHHHHHHHHHHHh
Confidence 3578899999999999999998888877653
No 194
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=38.01 E-value=45 Score=29.67 Aligned_cols=41 Identities=32% Similarity=0.346 Sum_probs=32.4
Q ss_pred hcccEEEEeeCCCC---cceeeeeCCCCceeehHHHHHHhhccc
Q 001107 435 HQNWKLECTRDEKG---TLRQRYISPDGKCYHSLRQVCLDLTET 475 (1156)
Q Consensus 435 ~~gw~i~~~~~~~~---~~r~ry~sp~~k~y~s~~~~~~~~~~~ 475 (1156)
-.||+=+...-..| ..---|.||.||...|..||..-|...
T Consensus 7 p~GW~R~~~~r~~g~~~k~dv~Y~sP~Gk~~Rs~~ev~~yL~~~ 50 (62)
T cd00122 7 PPGWKRELVIRKSGSAGKGDVYYYSPCGKKLRSKPEVARYLEKT 50 (62)
T ss_pred CCCeEEEEEEcCCCCCCcceEEEECCCCceecCHHHHHHHHHhC
Confidence 46998887765553 344459999999999999999988874
No 195
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=37.58 E-value=4 Score=48.68 Aligned_cols=70 Identities=29% Similarity=0.622 Sum_probs=49.0
Q ss_pred ccccccCCC--CceeecCCCCCccccCCCC-------CC----CCCCCCCccCCCC------cccCCCCCCCCccccccC
Q 001107 834 YKCSVCHFG--GELLLCDRCPSSFHRNCVG-------LE----DVPDGDWFCPSCC------CSICGNSNSREEVEDVVD 894 (1156)
Q Consensus 834 d~C~vC~dg--GeLl~CD~Cp~afH~~CL~-------l~----~vP~g~W~Cp~C~------C~iCg~~~~~~~~~~~~~ 894 (1156)
.+|..|+.+ |+..-|..=++.||..|+. |. -.-++.-||..|- |..||+...+
T Consensus 275 ~iC~~C~K~V~g~~~ac~Am~~~fHv~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlekC~~Cg~~I~d-------- 346 (468)
T KOG1701|consen 275 GICAFCHKTVSGQGLAVEAMDQLFHVQCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEKCNKCGEPIMD-------- 346 (468)
T ss_pred hhhhhcCCcccCcchHHHHhhhhhcccceehHhhhhhhccccccccCCcccchHHHHHHHHHHhhhhhHHHH--------
Confidence 379999874 6777788888899999985 21 1123456888884 8888876432
Q ss_pred Cceeeccccccccccccccc
Q 001107 895 GSVLICHQCELKYHRKCLQN 914 (1156)
Q Consensus 895 g~ll~CdqCer~YH~~CL~~ 914 (1156)
+|+ ..|+++||..|..-
T Consensus 347 -~iL--rA~GkayHp~CF~C 363 (468)
T KOG1701|consen 347 -RIL--RALGKAYHPGCFTC 363 (468)
T ss_pred -HHH--HhcccccCCCceEE
Confidence 122 45889999999754
No 196
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=37.39 E-value=25 Score=40.84 Aligned_cols=23 Identities=35% Similarity=0.797 Sum_probs=20.0
Q ss_pred CCceeeccccccccc-ccccccCC
Q 001107 894 DGSVLICHQCELKYH-RKCLQNGA 916 (1156)
Q Consensus 894 ~g~ll~CdqCer~YH-~~CL~~~~ 916 (1156)
++.|++|-.|+.||| .+|++...
T Consensus 145 e~~m~QC~iCEDWFHce~c~~~~~ 168 (345)
T KOG2752|consen 145 EGEMLQCVICEDWFHCEGCMQAKT 168 (345)
T ss_pred cceeeeEEeccchhcccccCcccc
Confidence 588999999999999 89987653
No 197
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=37.18 E-value=13 Score=35.50 Aligned_cols=28 Identities=29% Similarity=0.733 Sum_probs=18.5
Q ss_pred cCCCCCccccCCCC--CCCCCCCCCccCCCC
Q 001107 848 CDRCPSSFHRNCVG--LEDVPDGDWFCPSCC 876 (1156)
Q Consensus 848 CD~Cp~afH~~CL~--l~~vP~g~W~Cp~C~ 876 (1156)
-..|...||..|+. +..- ...=.||-|+
T Consensus 49 ~g~C~H~FH~hCI~kWl~~~-~~~~~CPmCR 78 (85)
T PF12861_consen 49 WGKCSHNFHMHCILKWLSTQ-SSKGQCPMCR 78 (85)
T ss_pred eccCccHHHHHHHHHHHccc-cCCCCCCCcC
Confidence 34499999999986 4322 2234777776
No 198
>PRK14852 hypothetical protein; Provisional
Probab=36.58 E-value=92 Score=41.72 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=66.3
Q ss_pred EEEEeCCEEEEEEEEEEe----------------------cCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcE
Q 001107 1028 VLLERNEELVTVATVRIF----------------------GEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEK 1085 (1156)
Q Consensus 1028 ~VL~~~~e~Vs~Arlri~----------------------g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~ 1085 (1156)
++.-..+++|++.++.+- |..++|+-++|+.+..|.+-+--.|+..+=+++...++.-
T Consensus 78 ~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd 157 (989)
T PRK14852 78 FIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDD 157 (989)
T ss_pred EEeccCCcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCe
Confidence 443344777788777653 2368899999998888887777788888877777889999
Q ss_pred EEecCchhhHHHhhccCCcEEcCh
Q 001107 1086 LILPAIPTVLKTWTTSFGFKRMTA 1109 (1156)
Q Consensus 1086 LvL~A~~~A~~fw~~klGF~~~~~ 1109 (1156)
+++---+.=+.||+.-|||+.+++
T Consensus 158 ~~i~VnPkH~~FY~r~l~f~~ig~ 181 (989)
T PRK14852 158 ILVTVNPKHVKFYTDIFLFKPFGE 181 (989)
T ss_pred EEEEECcchHHHHHHHhCCccccc
Confidence 999999999999999999999974
No 199
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=36.07 E-value=1.1e+02 Score=29.75 Aligned_cols=40 Identities=8% Similarity=0.143 Sum_probs=32.4
Q ss_pred CCCCCCCEEEEEeCC---CeEEEEEEEecCCCceEEEEeCCCCCe
Q 001107 109 CSLPFGLCVDVYYNE---AWWEGVIFDLEDGSAERRIFFPDLGDE 150 (1156)
Q Consensus 109 ~~~~vGd~VDa~~~d---gWWeGvV~~v~~g~~~~~V~Fpgegde 150 (1156)
..|++|..+||-... -+|..+|+++.+. ++.|.|.|-.+.
T Consensus 26 ~~F~vGmkLEavD~~~~~~i~vAtV~~v~g~--~l~v~~dg~~~~ 68 (96)
T smart00561 26 NGFKVGMKLEAVDPRNPSLICVATVVEVKGY--RLLLHFDGWDDK 68 (96)
T ss_pred CcccCCCEEEEECCCCCceEEEEEEEEEECC--EEEEEEccCCCc
Confidence 579999999997665 6899999999743 799999985543
No 200
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=35.79 E-value=34 Score=41.05 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=46.0
Q ss_pred hhhhhHHHHHhhcccccccCCccchhHHHHHhhhcccCCCCCccccEEEEEEeCCEEEEEEEEEEecC--ceEE---EeE
Q 001107 980 SKLNIAHRVMHECFEPVHEPYSSGDLAEDVLFSRWSMLNRLNFQGFYTVLLERNEELVTVATVRIFGE--KAAE---IPL 1054 (1156)
Q Consensus 980 SkLa~AL~vm~EcF~Pi~d~rtg~Dli~~~vy~~gs~~~r~df~Gfy~~VL~~~~e~Vs~Arlri~g~--~~AE---Ip~ 1054 (1156)
....+-|=.|.-+|.-- .| +| +|-..|.-.||...|+.=.|+ .|.. .-++ +--
T Consensus 208 k~YCQnLCLlaKLFLdh---KT--------LY--------yDvdpFlFYVlte~d~~G~VG---YFSKEK~s~~~yNlaC 265 (396)
T KOG2747|consen 208 KLYCQNLCLLAKLFLDH---KT--------LY--------YDVDPFLFYVLTECDSYGCVG---YFSKEKESSENYNLAC 265 (396)
T ss_pred hHHHHHHHHHHHHHhcC---ce--------eE--------EeccceEEEEEEecCCcceee---eeccccccccccceee
Confidence 45677777777777632 21 12 455677777777655432233 2322 2233 778
Q ss_pred eeeecCccCCChhHHHHHH
Q 001107 1055 VGTRFQYRRLGMCRILMNE 1073 (1156)
Q Consensus 1055 VAt~~~yRgqG~Gr~Lm~a 1073 (1156)
|-|.|.||++|||+.|++.
T Consensus 266 ILtLPpyQRkGYGklLIdF 284 (396)
T KOG2747|consen 266 ILTLPPYQRKGYGKLLIDF 284 (396)
T ss_pred eeecChhhhcccchhhhhh
Confidence 9999999999999999864
No 201
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.75 E-value=18 Score=45.23 Aligned_cols=18 Identities=22% Similarity=0.301 Sum_probs=14.3
Q ss_pred eecccccccccccccccC
Q 001107 898 LICHQCELKYHRKCLQNG 915 (1156)
Q Consensus 898 l~CdqCer~YH~~CL~~~ 915 (1156)
-.|+.|++.|+..++..+
T Consensus 156 D~Ce~Cg~~~~P~~l~~p 173 (558)
T COG0143 156 DQCENCGRTLDPTELINP 173 (558)
T ss_pred chhhhccCcCCchhcCCC
Confidence 369999999998887544
No 202
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=35.38 E-value=59 Score=31.94 Aligned_cols=55 Identities=9% Similarity=0.119 Sum_probs=38.0
Q ss_pred CCCCCCCCEEEEEeCCCeE-----------EEEEEEecCCCceEEEEeCCCCCeEEEecCCccccc
Q 001107 108 KCSLPFGLCVDVYYNEAWW-----------EGVIFDLEDGSAERRIFFPDLGDEMTVGIDSLRITQ 162 (1156)
Q Consensus 108 ~~~~~vGd~VDa~~~dgWW-----------eGvV~~v~~g~~~~~V~Fpgegde~~~~~~dLRp~~ 162 (1156)
...|++||.|+.--|.+-- +|+|+..-...=.+.|+.-+-...+.+.+.+|||..
T Consensus 30 l~ey~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg~~g~ay~V~v~~G~k~K~liv~peHLk~~~ 95 (98)
T COG2139 30 LQEYKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVRGRAYKVEVYDGNKEKTLIVRPEHLKPQK 95 (98)
T ss_pred HhhccCCCEEEEEeCcccccCCCCccccCcceEEEeccCCEEEEEEecCCceEEEEeCHHHccccc
Confidence 4689999999998887653 899999865432334443344444667788888864
No 203
>PRK04306 50S ribosomal protein L21e; Reviewed
Probab=35.35 E-value=65 Score=31.78 Aligned_cols=55 Identities=11% Similarity=0.020 Sum_probs=39.6
Q ss_pred CCCCCCCCEEEEEeCCCeE-----------EEEEEEecCCCceEEEEeCCCCCeEEEecCCccccc
Q 001107 108 KCSLPFGLCVDVYYNEAWW-----------EGVIFDLEDGSAERRIFFPDLGDEMTVGIDSLRITQ 162 (1156)
Q Consensus 108 ~~~~~vGd~VDa~~~dgWW-----------eGvV~~v~~g~~~~~V~Fpgegde~~~~~~dLRp~~ 162 (1156)
-..|++||.||.--+.++. +|+|..+....-.+.|..-+-...+-+.+++||++.
T Consensus 32 l~~y~~Gd~V~I~~d~sv~kGmPh~~yhGkTG~V~~v~~~A~~V~v~vg~k~Kri~vr~eHlk~~~ 97 (98)
T PRK04306 32 LQEFEEGDKVHIVIDPSVHKGMPHPRFHGKTGTVVGKRGRAYIVEVKDGGKEKTLIVRPEHLRPQK 97 (98)
T ss_pred HHhccCCCEEEEEecCceecCCccccccCCCEEEEeecCeEEEEEEEECCceeEEEcCHHHcCccC
Confidence 4579999999999999997 789998864332345555455555666777887753
No 204
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=35.20 E-value=53 Score=31.79 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=41.8
Q ss_pred CCCCEEEEEeCC-CeEEEEEEEecC----------CCceEEEEeCCCCCeEEEecCCcccccccc
Q 001107 112 PFGLCVDVYYNE-AWWEGVIFDLED----------GSAERRIFFPDLGDEMTVGIDSLRITQDWD 165 (1156)
Q Consensus 112 ~vGd~VDa~~~d-gWWeGvV~~v~~----------g~~~~~V~Fpgegde~~~~~~dLRp~~dW~ 165 (1156)
.+||.|=|=..+ -||.|.|++-.. ....+-|+|-|+.+..-++.++|-|-.+..
T Consensus 2 ~~GdlVWaK~~g~pwWPa~V~~~~~~p~~~~~~~~~~~~~~V~Ffgs~~y~Wv~~~~l~pf~e~~ 66 (95)
T cd05838 2 LYGDIVWAKLGNFRWWPAIICDPREVPPNIQVLRHCIGEFCVMFFGTHDYYWVHRGRVFPYQEGD 66 (95)
T ss_pred CcCCEEEEECCCCCCCCeEEcChhhcChhHhhccCCCCeEEEEEeCCCCEEEeccccccchhhhh
Confidence 479999887665 999999987311 113689999999998888888888887775
No 205
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=34.92 E-value=56 Score=32.41 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=33.9
Q ss_pred CCCCCCEEEEEeCC-CeEEEEEEEec------------CCCceEEEEeCCC-CCeEEEecCCcccccc
Q 001107 110 SLPFGLCVDVYYNE-AWWEGVIFDLE------------DGSAERRIFFPDL-GDEMTVGIDSLRITQD 163 (1156)
Q Consensus 110 ~~~vGd~VDa~~~d-gWWeGvV~~v~------------~g~~~~~V~Fpge-gde~~~~~~dLRp~~d 163 (1156)
.|.+||.|=|=..+ -||.|.|+..- .....|-|.|-|. ++.-=+..++|.|-.+
T Consensus 2 ~~~~GdlVWaK~~g~PwWPa~V~~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~~aWv~~~~l~pf~~ 69 (110)
T cd05837 2 KYQVGDLVWAKVSGYPWWPCMVCSDPLLGTYTKTKRNKRKPRQYHVQFFGDNPERAWISEKSLKPFKG 69 (110)
T ss_pred CCCCCCEEEEeCCCCCCCCEEEecccccchhhhhhhccCCCCeEEEEEcCCCCCEEEecHHHccccCC
Confidence 58899999885555 99999998521 1123577877764 3444444445444433
No 206
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=34.34 E-value=64 Score=32.78 Aligned_cols=40 Identities=33% Similarity=0.478 Sum_probs=29.1
Q ss_pred CCCCCCCCEEEEEeCCCCccceEEEEEEEE-----ecCCCce-EEeCC
Q 001107 19 QRKLPVGERVEVRSDEDGFLGSWHAGTVIA-----SSSDCRT-VKYDH 60 (1156)
Q Consensus 19 ~~~fkvGd~VEV~s~eeG~~GsWF~AtVi~-----~~~~~~~-V~Y~d 60 (1156)
...+++||.|=+.-+..+.+ |.||+|+. ...+..+ |+|-|
T Consensus 53 ~~~L~~GD~VLA~~~~~~~~--Y~Pg~V~~~~~~~~~~~~~~~V~f~n 98 (124)
T PF15057_consen 53 RHSLQVGDKVLAPWEPDDCR--YGPGTVIAGPERRASEDKEYTVRFYN 98 (124)
T ss_pred cCcCCCCCEEEEecCcCCCE--EeCEEEEECccccccCCceEEEEEEC
Confidence 67899999999995555554 99999997 3344444 76543
No 207
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=34.15 E-value=14 Score=42.58 Aligned_cols=30 Identities=40% Similarity=0.767 Sum_probs=26.2
Q ss_pred eEcCCCCCeeeecceeecCCC-CCcCCCcee
Q 001107 762 IKCKCCGKVYTLSGFEDHAGS-TYCNPASHI 791 (1156)
Q Consensus 762 I~C~cC~~~fs~S~FE~HAG~-~~~~P~~~I 791 (1156)
|+|.|=+.-|||.+|..|||+ ....|-++|
T Consensus 253 i~c~chg~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 253 IVCVCHGSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred EEEEecCCCCCHHHHHHhcCCCCcCCchhcc
Confidence 899999999999999999998 456777666
No 208
>PRK00756 acyltransferase NodA; Provisional
Probab=34.05 E-value=49 Score=35.53 Aligned_cols=62 Identities=26% Similarity=0.349 Sum_probs=44.2
Q ss_pred EEEEEEeCCEEEE-EEEEEEe---cC---ceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEe
Q 001107 1026 YTVLLERNEELVT-VATVRIF---GE---KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLIL 1088 (1156)
Q Consensus 1026 y~~VL~~~~e~Vs-~Arlri~---g~---~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL 1088 (1156)
..++.|+..-+.| .+.+|-| |. =+||+.+.||+++..|.|++..| .++--.|+++||.--+-
T Consensus 55 lRaIgyD~~GVaAH~G~LRRFIkVg~vDlLVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FG 123 (196)
T PRK00756 55 LRAIAYDSHGVAAHMGLLRRFIKVGEVDLLVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFG 123 (196)
T ss_pred eEEEeecCccHhHhHHHHhhhheecccceeEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecc
Confidence 4566666544433 2333322 21 47899999999999999999876 68889999999986443
No 209
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=33.78 E-value=36 Score=29.06 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=17.9
Q ss_pred CCCCCCEEEEE---eCCCeEEEEE
Q 001107 110 SLPFGLCVDVY---YNEAWWEGVI 130 (1156)
Q Consensus 110 ~~~vGd~VDa~---~~dgWWeGvV 130 (1156)
.|+.||.|.+. .+++||.|..
T Consensus 17 s~~~Gd~i~v~~~~~~~~ww~~~~ 40 (55)
T PF07653_consen 17 SFKKGDVIEVLGEKDDDGWWLGEN 40 (55)
T ss_dssp EB-TTEEEEEEEEECSTSEEEEEE
T ss_pred EEecCCEEEEEEeecCCCEEEEEE
Confidence 68899999998 6789999987
No 210
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=33.76 E-value=19 Score=35.00 Aligned_cols=29 Identities=38% Similarity=1.033 Sum_probs=25.0
Q ss_pred cccccccCC-CCceeecCC--CCCccccCCCC
Q 001107 833 DYKCSVCHF-GGELLLCDR--CPSSFHRNCVG 861 (1156)
Q Consensus 833 dd~C~vC~d-gGeLl~CD~--Cp~afH~~CL~ 861 (1156)
...|.+|+. .|-.+-|.. |...||..|..
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCCCceeEEcCCCCCCcCCCHHHHH
Confidence 457999998 577999988 99999999974
No 211
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=32.92 E-value=2.3e+02 Score=32.14 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=46.5
Q ss_pred EEEEEeCCEEEEEEEEEEecCceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCcEEEe
Q 001107 1027 TVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLIL 1088 (1156)
Q Consensus 1027 ~~VL~~~~e~Vs~Arlri~g~~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~~LvL 1088 (1156)
++-.+.+|++||+|.+-+....+.-|=. ==+|+|-..++|...+-.-.++++++|.+.+-|
T Consensus 146 ~~ey~~~g~LiaVav~D~l~d~lSAVY~-FyDPd~~~~SLG~~~iL~qI~~ak~~gl~y~YL 206 (240)
T PRK01305 146 FIEFRGDGKLVAVAVTDVLDDGLSAVYT-FYDPDEEHRSLGTFAILWQIELAKRLGLPYVYL 206 (240)
T ss_pred EEEEEeCCeEEEEEEEeccCCceeeEEE-eeCCCccccCCHHHHHHHHHHHHHHcCCCeEee
Confidence 3444578999999999988777766633 367888888899977666667789999877654
No 212
>PLN02400 cellulose synthase
Probab=32.84 E-value=41 Score=44.97 Aligned_cols=46 Identities=28% Similarity=0.737 Sum_probs=35.9
Q ss_pred CCCcccccccCCC------Cc-eeecCCCCCccccCCCCCCCCCCCCCccCCCC
Q 001107 830 GENDYKCSVCHFG------GE-LLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCC 876 (1156)
Q Consensus 830 ~~ndd~C~vC~dg------Ge-Ll~CD~Cp~afH~~CL~l~~vP~g~W~Cp~C~ 876 (1156)
..+...|.+|+|. |+ .+-|..|.-..-..|+.. +..+|.=.||.|+
T Consensus 33 ~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEY-ERkeGnq~CPQCk 85 (1085)
T PLN02400 33 NLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEY-ERKDGTQCCPQCK 85 (1085)
T ss_pred ccCCceeeecccccCcCCCCCEEEEEccCCCccccchhhe-ecccCCccCcccC
Confidence 3466789999973 44 789999987777788843 4778888999997
No 213
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=31.57 E-value=23 Score=27.04 Aligned_cols=10 Identities=70% Similarity=1.903 Sum_probs=8.6
Q ss_pred CCCCccCCCC
Q 001107 867 DGDWFCPSCC 876 (1156)
Q Consensus 867 ~g~W~Cp~C~ 876 (1156)
+|+|.|+.|.
T Consensus 2 ~g~W~C~~C~ 11 (30)
T PF00641_consen 2 EGDWKCPSCT 11 (30)
T ss_dssp SSSEEETTTT
T ss_pred CcCccCCCCc
Confidence 6899999986
No 214
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.99 E-value=22 Score=45.48 Aligned_cols=40 Identities=25% Similarity=0.590 Sum_probs=31.5
Q ss_pred CCCCccCCCC------cccCCCCCCCCccccccCCceeecccccccccccccccC
Q 001107 867 DGDWFCPSCC------CSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNG 915 (1156)
Q Consensus 867 ~g~W~Cp~C~------C~iCg~~~~~~~~~~~~~g~ll~CdqCer~YH~~CL~~~ 915 (1156)
.+.|+|..|. |.+|+-.. .|....|.+|++.-|..|+..-
T Consensus 766 ~~~~~c~rc~s~a~~~CtVC~~vi---------~G~~~~c~~C~H~gH~sh~~sw 811 (839)
T KOG0269|consen 766 TKLWQCDRCESRASAKCTVCDLVI---------RGVDVWCQVCGHGGHDSHLKSW 811 (839)
T ss_pred ccceeechHHHHhhcCceeeccee---------eeeEeecccccccccHHHHHHH
Confidence 3348888775 88887653 3778999999999999998764
No 215
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=30.91 E-value=7.4 Score=31.82 Aligned_cols=38 Identities=34% Similarity=0.809 Sum_probs=23.4
Q ss_pred ccccccCCC---Cc-eeecCCCCCccccCCCC--CCCCCCCCCccCCCC
Q 001107 834 YKCSVCHFG---GE-LLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCC 876 (1156)
Q Consensus 834 d~C~vC~dg---Ge-Ll~CD~Cp~afH~~CL~--l~~vP~g~W~Cp~C~ 876 (1156)
|.|.+|.+. ++ .+... |.-.||..|+. +..- -.||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 358888863 33 44444 89999999987 3321 2777764
No 216
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=30.36 E-value=48 Score=36.07 Aligned_cols=44 Identities=23% Similarity=0.196 Sum_probs=30.4
Q ss_pred HHHHHHHhhhc---ccE-EEEeeCCCCcceeeeeCCCCceeehHHHHHH
Q 001107 426 ILSVKKHLKHQ---NWK-LECTRDEKGTLRQRYISPDGKCYHSLRQVCL 470 (1156)
Q Consensus 426 ~~~~~khl~~~---gw~-i~~~~~~~~~~r~ry~sp~~k~y~s~~~~~~ 470 (1156)
..+||+|+.+| |-. -+-+....|++||||+=-.- -|.+|.|-|+
T Consensus 192 ~~Tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 239 (239)
T PRK10430 192 RVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRLQAE-HYSLLKQYCQ 239 (239)
T ss_pred HHHHHHHHHHHHhCCEEEEEeeccCCCCCCeeeecccc-cchhhhhccC
Confidence 35799999988 543 23444556899999986544 4677777663
No 217
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=30.16 E-value=1e+02 Score=29.74 Aligned_cols=50 Identities=24% Similarity=0.397 Sum_probs=33.7
Q ss_pred EEEEe--CCCeEEEEEEEecCC------CceEEEEeCC--CCCeEEEecCCcccc----ccccc
Q 001107 117 VDVYY--NEAWWEGVIFDLEDG------SAERRIFFPD--LGDEMTVGIDSLRIT----QDWDE 166 (1156)
Q Consensus 117 VDa~~--~dgWWeGvV~~v~~g------~~~~~V~Fpg--egde~~~~~~dLRp~----~dW~~ 166 (1156)
|||.. .|+|-|+.|+.+... .--|.|.|.+ +.....+..+++||+ +.|.+
T Consensus 2 vD~~d~~~gAWfEa~i~~i~~~~~~~~e~viYhIkyddype~gvv~~~~~~iRpRARt~l~w~~ 65 (85)
T PF12148_consen 2 VDARDRNMGAWFEAQIVTITKKCMSDDEDVIYHIKYDDYPENGVVEMRSKDIRPRARTILKWDE 65 (85)
T ss_dssp EEEE-TTT-EEEEEEEEEEEES-SSSSTTEEEEEEETT-GGG-EEEEEGGGEEE---SBE-GGG
T ss_pred cccccCCCcceEEEEEEEeeccCCCCCCCEEEEEEeccCCCcCceecccccccceeeEeccHHh
Confidence 78864 468999999887432 2358999986 555678889999996 56654
No 218
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=29.63 E-value=45 Score=42.60 Aligned_cols=22 Identities=23% Similarity=0.676 Sum_probs=19.3
Q ss_pred CCCCCCCEEEEEeCC--CeEEEEE
Q 001107 109 CSLPFGLCVDVYYNE--AWWEGVI 130 (1156)
Q Consensus 109 ~~~~vGd~VDa~~~d--gWWeGvV 130 (1156)
-.|+.||.+|...+| |||.|.+
T Consensus 1068 ls~~~~diIei~~edpSGWw~gk~ 1091 (1106)
T KOG0162|consen 1068 LSFKKGDIIEIMREDPSGWWLGKL 1091 (1106)
T ss_pred ccccCCCEEEEeccCCCcchhhcc
Confidence 468889999999988 9999983
No 219
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=29.62 E-value=25 Score=42.28 Aligned_cols=25 Identities=24% Similarity=0.667 Sum_probs=20.5
Q ss_pred CCCCCCCCEEEEE--eCCCeEEEEEEE
Q 001107 108 KCSLPFGLCVDVY--YNEAWWEGVIFD 132 (1156)
Q Consensus 108 ~~~~~vGd~VDa~--~~dgWWeGvV~~ 132 (1156)
.-.|+|||.+|+. .++|||+|+.-.
T Consensus 116 ELelkVGDiIeli~eVEeGWw~G~Lng 142 (627)
T KOG4348|consen 116 ELELKVGDIIELISEVEEGWWKGKLNG 142 (627)
T ss_pred eeeeeeccHHHhhhHhhhhhhhceecC
Confidence 3568999999985 578999999854
No 220
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=29.56 E-value=1.4e+02 Score=26.87 Aligned_cols=29 Identities=10% Similarity=0.314 Sum_probs=22.1
Q ss_pred CCCCCEEEEEeCCCeEEEEEEEecCCCceEEEEe
Q 001107 111 LPFGLCVDVYYNEAWWEGVIFDLEDGSAERRIFF 144 (1156)
Q Consensus 111 ~~vGd~VDa~~~dgWWeGvV~~v~~g~~~~~V~F 144 (1156)
-++||.++ | .+| ++|+|.++.+++ +.|-+
T Consensus 4 a~vGdiIe-f-k~g-~~G~V~kv~eNS--VIVdI 32 (57)
T PF09953_consen 4 AKVGDIIE-F-KDG-FTGIVEKVYENS--VIVDI 32 (57)
T ss_pred cccCcEEE-E-cCC-cEEEEEEEecCc--EEEEE
Confidence 46899999 5 456 799999999877 54444
No 221
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=28.96 E-value=35 Score=24.94 Aligned_cols=9 Identities=67% Similarity=1.951 Sum_probs=7.3
Q ss_pred CCCccCCCC
Q 001107 868 GDWFCPSCC 876 (1156)
Q Consensus 868 g~W~Cp~C~ 876 (1156)
|+|.|+.|.
T Consensus 1 g~W~C~~C~ 9 (26)
T smart00547 1 GDWECPACT 9 (26)
T ss_pred CcccCCCCC
Confidence 679999875
No 222
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=27.95 E-value=76 Score=37.16 Aligned_cols=26 Identities=35% Similarity=0.650 Sum_probs=17.1
Q ss_pred CCcccccccCCC-------------CceeecCCCCCccc
Q 001107 831 ENDYKCSVCHFG-------------GELLLCDRCPSSFH 856 (1156)
Q Consensus 831 ~ndd~C~vC~dg-------------GeLl~CD~Cp~afH 856 (1156)
.+..+|.||+.. ...+.|..|..-+|
T Consensus 185 ~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~ 223 (309)
T PRK03564 185 EQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWH 223 (309)
T ss_pred cCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccc
Confidence 456789999852 13677777765544
No 223
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=27.82 E-value=2.2e+02 Score=34.10 Aligned_cols=84 Identities=20% Similarity=0.353 Sum_probs=64.4
Q ss_pred CCCccccEEEEEEeCC--EEEE-----EEEEEEecC--ceEEEeEeeeecCccCCChhHHHHHHHHHHHHHcCCc-----
Q 001107 1019 RLNFQGFYTVLLERNE--ELVT-----VATVRIFGE--KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVE----- 1084 (1156)
Q Consensus 1019 r~df~Gfy~~VL~~~~--e~Vs-----~Arlri~g~--~~AEIp~VAt~~~yRgqG~Gr~Lm~aIE~~l~~lgV~----- 1084 (1156)
...+.--||+.+...+ ++|| -++|||.+. +.+||-+++|++..|++++.=.|+.+|-+...-.|+-
T Consensus 128 ~pg~~~~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yT 207 (421)
T KOG2779|consen 128 PPGWKKEWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYT 207 (421)
T ss_pred CCCCccceEEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhh
Confidence 3445556888877554 6665 367888875 7899999999999999999999999988766555543
Q ss_pred -EEEecCchhhHHHhhccC
Q 001107 1085 -KLILPAIPTVLKTWTTSF 1102 (1156)
Q Consensus 1085 -~LvL~A~~~A~~fw~~kl 1102 (1156)
-++||+-...-..|-.+|
T Consensus 208 aGvvLp~PVstcRY~HRsL 226 (421)
T KOG2779|consen 208 AGVVLPKPVSTCRYWHRSL 226 (421)
T ss_pred cceeeccccchhhhhhccC
Confidence 578888888888887643
No 224
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=26.22 E-value=37 Score=40.09 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=44.9
Q ss_pred hhhhhHHHHHhhcccccccCCccchhHHHHHhhhcccCCCCCccccEEEEEEeCCE----EEEEEEEEEecCceEEEeEe
Q 001107 980 SKLNIAHRVMHECFEPVHEPYSSGDLAEDVLFSRWSMLNRLNFQGFYTVLLERNEE----LVTVATVRIFGEKAAEIPLV 1055 (1156)
Q Consensus 980 SkLa~AL~vm~EcF~Pi~d~rtg~Dli~~~vy~~gs~~~r~df~Gfy~~VL~~~~e----~Vs~Arlri~g~~~AEIp~V 1055 (1156)
..+.+-|-.+.-+|.-- . ++ -+|..+|--.||.+.|. +||-=+=--...+-.-+--|
T Consensus 208 ~~~CrnLCLlsKlFLd~---K--------tL--------YyDVDpflFYvl~~~~~~~~h~vGyFSKEK~S~~~yNLaCI 268 (395)
T COG5027 208 RLYCRNLCLLSKLFLDH---K--------TL--------YYDVDPFLFYVLTERGDTGCHLVGYFSKEKESEQDYNLACI 268 (395)
T ss_pred hhHHHHHHHHHHHHhcC---c--------ee--------EEeccceEEEEEEEcCCcceeeeeeechhhcccccCceEEE
Confidence 34666677777777622 1 11 25566776667776553 44421111111222347889
Q ss_pred eeecCccCCChhHHHHH
Q 001107 1056 GTRFQYRRLGMCRILMN 1072 (1156)
Q Consensus 1056 At~~~yRgqG~Gr~Lm~ 1072 (1156)
-|.|.||++|||..||+
T Consensus 269 LtLP~yQRrGYG~lLId 285 (395)
T COG5027 269 LTLPPYQRRGYGKLLID 285 (395)
T ss_pred EecChhHhcccceEeee
Confidence 99999999999999975
No 225
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=26.08 E-value=50 Score=40.96 Aligned_cols=46 Identities=30% Similarity=0.455 Sum_probs=36.4
Q ss_pred CCcccccccCCCCceeecCCCCCccccCCCCC-CCCC--CCCCccCCCC
Q 001107 831 ENDYKCSVCHFGGELLLCDRCPSSFHRNCVGL-EDVP--DGDWFCPSCC 876 (1156)
Q Consensus 831 ~ndd~C~vC~dgGeLl~CD~Cp~afH~~CL~l-~~vP--~g~W~Cp~C~ 876 (1156)
..+-+|+-|+-.|..+.|+.|-+.||..|+.. .+.+ .-.|.|+.|.
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~ 106 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPY 106 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCccc
Confidence 34568999999999999999999999999972 2222 3358888765
No 226
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=25.39 E-value=37 Score=31.10 Aligned_cols=34 Identities=26% Similarity=0.634 Sum_probs=12.9
Q ss_pred cccCCCCCCCCccccccCCceeecc--cccccccccccccC
Q 001107 877 CSICGNSNSREEVEDVVDGSVLICH--QCELKYHRKCLQNG 915 (1156)
Q Consensus 877 C~iCg~~~~~~~~~~~~~g~ll~Cd--qCer~YH~~CL~~~ 915 (1156)
|.||.....+.+ ....+.|+ +|...||..||...
T Consensus 5 C~IC~~~~~~~~-----~~p~~~C~n~~C~~~fH~~CL~~w 40 (70)
T PF11793_consen 5 CGICYSYRLDDG-----EIPDVVCPNPSCGKKFHLLCLSEW 40 (70)
T ss_dssp -SSS--SS-TT----------B--S-TT----B-SGGGHHH
T ss_pred CCcCCcEecCCC-----CcCceEcCCcccCCHHHHHHHHHH
Confidence 777765433111 12358898 89999999999765
No 227
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=25.28 E-value=50 Score=42.29 Aligned_cols=42 Identities=29% Similarity=0.802 Sum_probs=23.5
Q ss_pred cccccCCC--CceeecCCCCCccc-cCCCC-CCCCCCCCCccCCCC
Q 001107 835 KCSVCHFG--GELLLCDRCPSSFH-RNCVG-LEDVPDGDWFCPSCC 876 (1156)
Q Consensus 835 ~C~vC~dg--GeLl~CD~Cp~afH-~~CL~-l~~vP~g~W~Cp~C~ 876 (1156)
.|..|+.. ....+|..|..... ..|.. -..+|.+.=||+.|-
T Consensus 3 ~Cp~Cg~~n~~~akFC~~CG~~l~~~~Cp~CG~~~~~~~~fC~~CG 48 (645)
T PRK14559 3 ICPQCQFENPNNNRFCQKCGTSLTHKPCPQCGTEVPVDEAHCPNCG 48 (645)
T ss_pred cCCCCCCcCCCCCccccccCCCCCCCcCCCCCCCCCcccccccccC
Confidence 46666642 34566777765432 44444 234666666676654
No 228
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=24.71 E-value=38 Score=31.59 Aligned_cols=28 Identities=39% Similarity=0.933 Sum_probs=24.6
Q ss_pred ccccccCCC-CceeecCC--CCCccccCCCC
Q 001107 834 YKCSVCHFG-GELLLCDR--CPSSFHRNCVG 861 (1156)
Q Consensus 834 d~C~vC~dg-GeLl~CD~--Cp~afH~~CL~ 861 (1156)
..|.+|+.. |-.+-|.. |...||..|.-
T Consensus 37 ~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 37 LKCSICKKKGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred CCCcCCCCCCCeEEEEeCCCCCcEEChHHHc
Confidence 469999998 88888875 99999999984
No 229
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=24.65 E-value=61 Score=43.48 Aligned_cols=46 Identities=30% Similarity=0.708 Sum_probs=35.1
Q ss_pred CCCcccccccCCC------Cc-eeecCCCCCccccCCCCCCCCCCCCCccCCCC
Q 001107 830 GENDYKCSVCHFG------GE-LLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCC 876 (1156)
Q Consensus 830 ~~ndd~C~vC~dg------Ge-Ll~CD~Cp~afH~~CL~l~~vP~g~W~Cp~C~ 876 (1156)
..+...|.+|+|. |+ .+-|..|.=..-..|+. -+..+|.=.||.|+
T Consensus 14 ~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr~eG~q~CPqCk 66 (1079)
T PLN02638 14 HGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YERKDGNQSCPQCK 66 (1079)
T ss_pred ccCCceeeecccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccC
Confidence 3466789999973 44 78899998777778874 34777888899987
No 230
>PLN02436 cellulose synthase A
Probab=23.56 E-value=72 Score=42.77 Aligned_cols=46 Identities=26% Similarity=0.692 Sum_probs=35.1
Q ss_pred CCCcccccccCCC------Cc-eeecCCCCCccccCCCCCCCCCCCCCccCCCC
Q 001107 830 GENDYKCSVCHFG------GE-LLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCC 876 (1156)
Q Consensus 830 ~~ndd~C~vC~dg------Ge-Ll~CD~Cp~afH~~CL~l~~vP~g~W~Cp~C~ 876 (1156)
..+...|.+|+|. |+ .+-|..|.-..-..|+. -+..+|.=.||.|+
T Consensus 33 ~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye-yer~eg~~~Cpqck 85 (1094)
T PLN02436 33 ELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE-YERREGNQACPQCK 85 (1094)
T ss_pred ccCCccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhcCCccCcccC
Confidence 3456789999973 34 78899998777778884 34677888999987
No 231
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=23.07 E-value=26 Score=26.02 Aligned_cols=20 Identities=25% Similarity=0.698 Sum_probs=17.4
Q ss_pred ceEcCCCCCeeeecceeecC
Q 001107 761 GIKCKCCGKVYTLSGFEDHA 780 (1156)
Q Consensus 761 GI~C~cC~~~fs~S~FE~HA 780 (1156)
.+.|+.|++.|.+..++.|.
T Consensus 2 l~~C~~CgR~F~~~~l~~H~ 21 (25)
T PF13913_consen 2 LVPCPICGRKFNPDRLEKHE 21 (25)
T ss_pred CCcCCCCCCEECHHHHHHHH
Confidence 35799999999999999885
No 232
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=23.05 E-value=2.8e+02 Score=37.01 Aligned_cols=103 Identities=22% Similarity=0.269 Sum_probs=64.4
Q ss_pred CCCCCCCCEEEEEeCCCCccceEEEEEEEEecCCCceEEeCCcccCCCCCCceEEEEccccccCCccccccccCCCCccc
Q 001107 19 QRKLPVGERVEVRSDEDGFLGSWHAGTVIASSSDCRTVKYDHLLTDAGDDNLVDIVCVSSIINSSTFADVTQSHSRGHIR 98 (1156)
Q Consensus 19 ~~~fkvGd~VEV~s~eeG~~GsWF~AtVi~~~~~~~~V~Y~dl~dddg~~~L~E~V~~s~~~~g~~~~~~~r~~~r~~IR 98 (1156)
...|.+||.|||..-| ..| +.++|..+.+..+.+.=.. +|-.++|. |+++ .+
T Consensus 405 ~~~F~~GD~VeV~~Ge--l~g--lkG~ve~vdg~~vti~~~~---e~l~~pl~--~~~~------------------eL- 456 (1024)
T KOG1999|consen 405 KHLFSPGDAVEVIVGE--LKG--LKGKVESVDGTIVTIMSKH---EDLKGPLE--VPAS------------------EL- 456 (1024)
T ss_pred ccccCCCCeEEEeeee--ecc--ceeEEEeccCceEEEeecc---ccCCCccc--cchH------------------hh-
Confidence 4459999999999633 344 7788888888776644220 11111221 2211 11
Q ss_pred CCCCCCCCCCCCCCCCCEEEEE---eCCCeEEEEEEEecCCCceEEEEeCCCCCeEEEecCCccccc
Q 001107 99 PLPPPVKFGKCSLPFGLCVDVY---YNEAWWEGVIFDLEDGSAERRIFFPDLGDEMTVGIDSLRITQ 162 (1156)
Q Consensus 99 P~PP~~~~~~~~~~vGd~VDa~---~~dgWWeGvV~~v~~g~~~~~V~Fpgegde~~~~~~dLRp~~ 162 (1156)
..-|++||+|=|- |+|. +|.|++|..+. +.|+=..+.+++.+-+.+|--.-
T Consensus 457 ---------rKyF~~GDhVKVi~G~~eG~--tGlVvrVe~~~--vi~~Sd~t~eel~Vf~~dlq~c~ 510 (1024)
T KOG1999|consen 457 ---------RKYFEPGDHVKVIAGRYEGD--TGLVVRVEQGD--VILLSDLTMEELKVFARDLQLCS 510 (1024)
T ss_pred ---------hhhccCCCeEEEEeccccCC--cceEEEEeCCe--EEEEecCccceeeEEehhcccch
Confidence 3468899998874 4443 78999997653 55555567778888887776443
No 233
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=22.62 E-value=1.1e+02 Score=34.36 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHcCCcEEEecCchhhHHHhhccCCcEEcC
Q 001107 1066 MCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRMT 1108 (1156)
Q Consensus 1066 ~Gr~Lm~aIE~~l~~lgV~~LvL~A~~~A~~fw~~klGF~~~~ 1108 (1156)
-...|+..++++|++.|+.+|++.+..++.++|. +.||...+
T Consensus 22 ~~~~~~~~~~~~a~~~~~~ki~~~~~~~~~~~~~-~~g~~~e~ 63 (266)
T TIGR03827 22 DVEALIPDLDALAKKEGYTKIIAKVPGSDKPLFE-ERGYLEEA 63 (266)
T ss_pred cHHHHHHHHHHHHHHcCCcEEEEEccHHHHHHHH-HCCCeEEE
Confidence 3788999999999999999999999999999999 89999864
No 234
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity. The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.
Probab=21.74 E-value=1.1e+02 Score=28.66 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=32.1
Q ss_pred hcccEEEEeeCCCC-c--ceeeeeCCCCceeehHHHHHHhhcccc
Q 001107 435 HQNWKLECTRDEKG-T--LRQRYISPDGKCYHSLRQVCLDLTETT 476 (1156)
Q Consensus 435 ~~gw~i~~~~~~~~-~--~r~ry~sp~~k~y~s~~~~~~~~~~~~ 476 (1156)
-.||+=|-.-...| . .-.-|.||-||.-.|..+|..-|..++
T Consensus 7 ~~GW~Re~vir~~~~~~~~dV~Y~aPcGKklRs~~ev~~yL~~~~ 51 (73)
T cd01397 7 ELGWRRETRIRGLGGRIQGEVAYYAPCGKKLRQYPEVIKYLSKNG 51 (73)
T ss_pred CCCceeEEEeccCCCCccceEEEECCCCcccccHHHHHHHHHhCC
Confidence 47999887655544 1 123499999999999999999998754
No 235
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.31 E-value=60 Score=38.56 Aligned_cols=44 Identities=30% Similarity=0.611 Sum_probs=27.5
Q ss_pred ccccccCCC---CceeecCCCCCccccCCCCCCCCCCCCCccCCCCcc
Q 001107 834 YKCSVCHFG---GELLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCCCS 878 (1156)
Q Consensus 834 d~C~vC~dg---GeLl~CD~Cp~afH~~CL~l~~vP~g~W~Cp~C~C~ 878 (1156)
+.|.+|-+. |+.+-==-|.-.||..|.+..-... .=+||-|+|.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCc
Confidence 689999873 5533224467789999998321111 2257777763
No 236
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=21.27 E-value=1.2e+02 Score=24.63 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=19.2
Q ss_pred CCCCCCCEEEEEeC--CCeEEEEEEE
Q 001107 109 CSLPFGLCVDVYYN--EAWWEGVIFD 132 (1156)
Q Consensus 109 ~~~~vGd~VDa~~~--dgWWeGvV~~ 132 (1156)
-.+..||.|.+... ++||.|...+
T Consensus 19 l~~~~Gd~v~v~~~~~~~w~~~~~~~ 44 (58)
T smart00326 19 LSFKKGDIITVLEKSDDGWWKGRLGR 44 (58)
T ss_pred CCCCCCCEEEEEEcCCCCeEEEEeCC
Confidence 36788999999865 8999997654
No 237
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.71 E-value=37 Score=38.74 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=21.6
Q ss_pred cCCCcccccccCCCCc----------eeecCCCCCccccCCCC
Q 001107 829 QGENDYKCSVCHFGGE----------LLLCDRCPSSFHRNCVG 861 (1156)
Q Consensus 829 ~~~ndd~C~vC~dgGe----------Ll~CD~Cp~afH~~CL~ 861 (1156)
.+-++..|.+|++.=+ -+.==.|+-.||.+|..
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIr 262 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIR 262 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhh
Confidence 3456778999986311 11112488899999985
No 238
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.66 E-value=5.5e+02 Score=28.74 Aligned_cols=83 Identities=11% Similarity=0.094 Sum_probs=62.4
Q ss_pred cccEEEEEEeCCEEEEEEEEEEe---------------------cCceEEEeEeeeec--CccCCC----hhHHHHHHHH
Q 001107 1023 QGFYTVLLERNEELVTVATVRIF---------------------GEKAAEIPLVGTRF--QYRRLG----MCRILMNELE 1075 (1156)
Q Consensus 1023 ~Gfy~~VL~~~~e~Vs~Arlri~---------------------g~~~AEIp~VAt~~--~yRgqG----~Gr~Lm~aIE 1075 (1156)
.-.|.+.+..+|+++|++||-.- .++++|.-|.|+.+ +-|+.| ....||..+-
T Consensus 51 ~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~i 130 (209)
T COG3916 51 DTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMI 130 (209)
T ss_pred CceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHH
Confidence 34566666889999999998531 23788999999887 444444 3567899999
Q ss_pred HHHHHcCCcEEEecCchhhHHHhhccCCcEE
Q 001107 1076 KRLMELGVEKLILPAIPTVLKTWTTSFGFKR 1106 (1156)
Q Consensus 1076 ~~l~~lgV~~LvL~A~~~A~~fw~~klGF~~ 1106 (1156)
+.+...|+++|+.=...-.+.... ..||..
T Consensus 131 e~a~~~G~~~IvtVt~~~meril~-r~Gw~~ 160 (209)
T COG3916 131 EYALARGITGIVTVTDTGMERILR-RAGWPL 160 (209)
T ss_pred HHHHHcCCceEEEEEchHHHHHHH-HcCCCe
Confidence 999999999999887766666666 677743
No 239
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=20.52 E-value=49 Score=25.27 Aligned_cols=28 Identities=29% Similarity=0.902 Sum_probs=11.8
Q ss_pred cccCCCCCCCCccccccCCceeeccccccccccccc
Q 001107 877 CSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCL 912 (1156)
Q Consensus 877 C~iCg~~~~~~~~~~~~~g~ll~CdqCer~YH~~CL 912 (1156)
|..|++.... +..+.|.+|+-..|..|.
T Consensus 3 C~~C~~~~~~--------~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 3 CDACGKPIDG--------GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp -TTTS----S----------EEE-TTT-----HHHH
T ss_pred CCcCCCcCCC--------CceEECccCCCccChhcC
Confidence 6678776531 258999999999998873
Done!