Query 001108
Match_columns 1156
No_of_seqs 780 out of 6088
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 16:03:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0065 Pleiotropic drug resis 100.0 4E-199 8E-204 1808.0 72.6 1045 36-1155 12-1077(1391)
2 PLN03140 ABC transporter G fam 100.0 5E-183 1E-187 1785.9 109.1 1132 19-1154 19-1166(1470)
3 TIGR00956 3a01205 Pleiotropic 100.0 7E-143 1E-147 1414.1 101.6 997 94-1153 3-1047(1394)
4 KOG0061 Transporter, ABC super 100.0 3.3E-84 7.2E-89 791.4 58.2 585 114-775 21-608 (613)
5 PLN03211 ABC transporter G-25; 100.0 9E-83 1.9E-87 787.0 63.5 609 114-775 35-658 (659)
6 TIGR00955 3a01204 The Eye Pigm 100.0 6.3E-83 1.4E-87 789.8 59.6 569 162-774 35-612 (617)
7 PLN03140 ABC transporter G fam 100.0 5.5E-81 1.2E-85 821.0 63.7 595 111-776 860-1467(1470)
8 KOG0055 Multidrug/pheromone ex 100.0 5.4E-79 1.2E-83 751.8 48.5 833 78-1092 314-1207(1228)
9 KOG0065 Pleiotropic drug resis 100.0 1.9E-78 4.2E-83 744.2 32.2 560 163-775 802-1383(1391)
10 TIGR00956 3a01205 Pleiotropic 100.0 4.7E-75 1E-79 769.0 61.1 577 116-774 757-1389(1394)
11 TIGR01257 rim_protein retinal- 100.0 9.6E-73 2.1E-77 742.0 73.5 216 855-1093 1937-2154(2272)
12 KOG0054 Multidrug resistance-a 100.0 2.1E-72 4.6E-77 710.3 51.5 799 78-1093 483-1357(1381)
13 PLN03130 ABC transporter C fam 100.0 5.3E-69 1.1E-73 718.0 62.3 211 854-1093 1236-1456(1622)
14 PTZ00265 multidrug resistance 100.0 7.6E-69 1.6E-73 710.2 57.8 216 854-1092 1164-1446(1466)
15 PLN03232 ABC transporter C fam 100.0 5.7E-68 1.2E-72 708.9 61.0 211 854-1093 1233-1453(1495)
16 COG1123 ATPase components of v 100.0 5.3E-68 1.1E-72 616.3 51.6 491 118-1093 5-514 (539)
17 TIGR00957 MRP_assoc_pro multi 100.0 1.4E-65 3.1E-70 686.6 68.7 211 854-1093 1283-1503(1522)
18 PRK13549 xylose transporter AT 100.0 4.2E-66 9E-71 628.8 50.8 456 166-1094 19-490 (506)
19 PRK09700 D-allose transporter 100.0 5.8E-66 1.2E-70 628.6 48.8 457 166-1093 19-493 (510)
20 PRK10762 D-ribose transporter 100.0 9.7E-66 2.1E-70 624.8 50.5 448 166-1094 18-480 (501)
21 PRK10261 glutathione transport 100.0 1.7E-65 3.7E-70 635.0 53.3 487 165-1093 29-548 (623)
22 TIGR03269 met_CoM_red_A2 methy 100.0 5.7E-65 1.2E-69 621.3 53.4 217 856-1093 280-512 (520)
23 PRK15134 microcin C ABC transp 100.0 6.4E-65 1.4E-69 621.7 52.3 464 165-1093 22-510 (529)
24 PRK15439 autoinducer 2 ABC tra 100.0 4.8E-65 1E-69 619.2 50.5 452 166-1094 25-488 (510)
25 TIGR02633 xylG D-xylose ABC tr 100.0 1.3E-64 2.8E-69 615.7 50.6 456 166-1093 15-487 (500)
26 TIGR01271 CFTR_protein cystic 100.0 1.6E-63 3.4E-68 664.9 65.1 210 854-1093 1216-1435(1490)
27 PRK11288 araG L-arabinose tran 100.0 2.1E-64 4.6E-69 613.1 50.6 450 166-1095 18-482 (501)
28 PTZ00243 ABC transporter; Prov 100.0 5.5E-63 1.2E-67 659.7 64.3 211 854-1093 1307-1528(1560)
29 PRK10982 galactose/methyl gala 100.0 2.5E-63 5.4E-68 602.7 49.0 449 165-1093 11-475 (491)
30 PRK10938 putative molybdenum t 100.0 2.4E-62 5.2E-67 594.3 45.7 214 855-1090 260-484 (490)
31 PRK11819 putative ABC transpor 100.0 2.1E-60 4.5E-65 583.9 52.6 201 855-1092 324-527 (556)
32 COG4172 ABC-type uncharacteriz 100.0 5E-60 1.1E-64 515.4 45.8 470 163-1093 21-511 (534)
33 PRK15064 ABC transporter ATP-b 100.0 8.3E-60 1.8E-64 576.8 51.2 198 855-1093 319-520 (530)
34 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.2E-59 9.2E-64 572.3 57.3 201 855-1092 322-525 (552)
35 PRK10636 putative ABC transpor 100.0 8.7E-57 1.9E-61 557.6 55.0 197 855-1093 312-512 (638)
36 PRK11147 ABC transporter ATPas 100.0 1.2E-56 2.6E-61 557.8 53.1 202 855-1093 319-523 (635)
37 PRK13409 putative ATPase RIL; 100.0 5.8E-57 1.2E-61 551.0 42.0 211 855-1107 340-554 (590)
38 COG1129 MglA ABC-type sugar tr 100.0 1.6E-55 3.4E-60 509.2 44.1 447 164-1090 20-482 (500)
39 PLN03073 ABC transporter F fam 100.0 2.2E-54 4.8E-59 536.8 47.9 199 855-1092 508-708 (718)
40 COG0488 Uup ATPase components 100.0 1.5E-53 3.3E-58 506.8 47.3 220 165-414 16-240 (530)
41 COG3845 ABC-type uncharacteriz 100.0 4.7E-51 1E-55 460.9 41.3 457 164-1094 16-488 (501)
42 KOG0061 Transporter, ABC super 100.0 2E-51 4.4E-56 502.9 23.6 263 852-1129 22-285 (613)
43 PLN03211 ABC transporter G-25; 100.0 9.4E-46 2E-50 457.8 28.3 270 852-1129 36-321 (659)
44 COG1126 GlnQ ABC-type polar am 100.0 1.1E-45 2.3E-50 376.9 23.6 214 856-1093 3-220 (240)
45 TIGR00955 3a01204 The Eye Pigm 100.0 5.1E-46 1.1E-50 460.8 23.5 267 880-1153 37-310 (617)
46 COG1126 GlnQ ABC-type polar am 100.0 1E-44 2.2E-49 369.8 22.6 220 164-435 14-238 (240)
47 KOG0927 Predicted transporter 100.0 9.4E-44 2E-48 402.1 32.0 202 854-1093 388-591 (614)
48 COG1135 AbcC ABC-type metal io 100.0 1.5E-43 3.3E-48 378.8 21.1 219 856-1094 2-227 (339)
49 COG1127 Ttg2A ABC-type transpo 100.0 5.8E-43 1.3E-47 362.4 22.1 231 855-1109 8-250 (263)
50 COG1131 CcmA ABC-type multidru 100.0 8.6E-43 1.9E-47 392.1 25.2 214 856-1093 5-221 (293)
51 COG1135 AbcC ABC-type metal io 100.0 6.1E-43 1.3E-47 374.2 22.7 224 163-437 17-246 (339)
52 COG1125 OpuBA ABC-type proline 100.0 7.7E-43 1.7E-47 362.1 21.0 210 164-414 13-225 (309)
53 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.2E-42 4.9E-47 369.9 24.0 216 855-1094 4-223 (254)
54 COG1116 TauB ABC-type nitrate/ 100.0 1.9E-42 4.2E-47 364.8 22.2 204 855-1084 3-207 (248)
55 COG1136 SalX ABC-type antimicr 100.0 3E-42 6.6E-47 364.0 23.6 208 857-1085 3-219 (226)
56 COG1120 FepC ABC-type cobalami 100.0 1.6E-42 3.5E-47 373.1 21.7 218 855-1094 2-224 (258)
57 COG1125 OpuBA ABC-type proline 100.0 2.1E-42 4.6E-47 358.9 19.5 213 856-1093 2-220 (309)
58 COG3839 MalK ABC-type sugar tr 100.0 5.4E-42 1.2E-46 382.8 23.4 216 167-433 18-234 (338)
59 COG4555 NatA ABC-type Na+ tran 100.0 1.2E-42 2.7E-47 348.9 15.6 201 882-1094 16-218 (245)
60 KOG0058 Peptide exporter, ABC 100.0 1.7E-42 3.7E-47 407.7 18.4 255 78-414 431-691 (716)
61 COG3842 PotA ABC-type spermidi 100.0 8E-42 1.7E-46 383.3 23.0 222 165-436 18-240 (352)
62 COG3638 ABC-type phosphate/pho 100.0 4.3E-42 9.3E-47 355.0 19.1 220 855-1095 3-234 (258)
63 COG1120 FepC ABC-type cobalami 100.0 4.9E-42 1.1E-46 369.4 20.2 210 165-413 15-227 (258)
64 COG1116 TauB ABC-type nitrate/ 100.0 3.6E-41 7.7E-46 355.2 22.5 194 165-403 16-211 (248)
65 COG1118 CysA ABC-type sulfate/ 100.0 1.3E-41 2.8E-46 362.8 18.9 205 879-1093 13-222 (345)
66 COG1127 Ttg2A ABC-type transpo 100.0 5.1E-41 1.1E-45 348.0 22.6 209 165-414 21-235 (263)
67 COG1131 CcmA ABC-type multidru 100.0 9E-41 1.9E-45 375.7 26.1 212 164-418 17-230 (293)
68 COG1118 CysA ABC-type sulfate/ 100.0 2.6E-41 5.5E-46 360.6 19.9 223 164-435 14-240 (345)
69 COG2884 FtsE Predicted ATPase 100.0 3.5E-41 7.6E-46 335.9 18.8 213 856-1092 2-220 (223)
70 COG3839 MalK ABC-type sugar tr 100.0 9.8E-41 2.1E-45 372.7 22.3 214 855-1093 3-218 (338)
71 PRK13537 nodulation ABC transp 100.0 4E-40 8.6E-45 374.1 27.2 215 854-1093 6-222 (306)
72 COG1117 PstB ABC-type phosphat 100.0 8.6E-41 1.9E-45 339.0 19.0 221 165-433 20-248 (253)
73 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.1E-40 6.6E-45 353.5 22.9 208 166-414 18-227 (254)
74 COG3638 ABC-type phosphate/pho 100.0 3.2E-40 7E-45 341.1 21.7 215 165-414 17-237 (258)
75 COG3842 PotA ABC-type spermidi 100.0 1.9E-40 4E-45 372.3 20.3 216 855-1094 5-222 (352)
76 COG1117 PstB ABC-type phosphat 100.0 2.1E-40 4.6E-45 336.2 18.5 217 855-1093 7-232 (253)
77 COG2274 SunT ABC-type bacterio 100.0 1.5E-40 3.2E-45 408.0 20.7 258 78-414 436-696 (709)
78 COG1136 SalX ABC-type antimicr 100.0 1.5E-39 3.2E-44 343.6 22.6 196 165-403 18-220 (226)
79 TIGR02314 ABC_MetN D-methionin 100.0 2.7E-39 5.9E-44 370.1 26.7 217 856-1093 2-225 (343)
80 COG4555 NatA ABC-type Na+ tran 100.0 4.8E-40 1E-44 330.3 17.2 206 165-414 15-222 (245)
81 TIGR02314 ABC_MetN D-methionin 100.0 6.7E-39 1.5E-43 366.8 28.2 206 165-413 18-229 (343)
82 cd03261 ABC_Org_Solvent_Resist 100.0 5.6E-39 1.2E-43 352.6 25.9 214 856-1093 1-221 (235)
83 PRK13536 nodulation factor exp 100.0 7.2E-39 1.6E-43 367.4 27.1 214 855-1093 41-256 (340)
84 PRK11432 fbpC ferric transport 100.0 8.2E-39 1.8E-43 368.1 27.4 205 166-413 20-225 (351)
85 TIGR03265 PhnT2 putative 2-ami 100.0 8.1E-39 1.8E-43 368.8 27.2 206 166-414 18-224 (353)
86 PRK11650 ugpC glycerol-3-phosp 100.0 8.2E-39 1.8E-43 369.2 26.9 205 166-413 18-223 (356)
87 PRK11650 ugpC glycerol-3-phosp 100.0 6.5E-39 1.4E-43 370.0 26.0 214 856-1093 4-219 (356)
88 TIGR03258 PhnT 2-aminoethylpho 100.0 1.1E-38 2.3E-43 368.2 27.5 206 166-413 19-227 (362)
89 TIGR03265 PhnT2 putative 2-ami 100.0 8.4E-39 1.8E-43 368.7 26.5 214 855-1093 4-219 (353)
90 PRK11432 fbpC ferric transport 100.0 1E-38 2.2E-43 367.3 26.9 214 855-1093 6-221 (351)
91 TIGR01257 rim_protein retinal- 100.0 2E-36 4.4E-41 399.8 51.6 216 854-1093 927-1144(2272)
92 KOG0057 Mitochondrial Fe/S clu 100.0 3.1E-39 6.6E-44 367.4 20.9 229 110-414 343-574 (591)
93 TIGR03258 PhnT 2-aminoethylpho 100.0 1.5E-38 3.2E-43 367.0 26.6 214 855-1093 5-223 (362)
94 COG1122 CbiO ABC-type cobalt t 100.0 6.9E-39 1.5E-43 345.6 21.9 214 856-1093 4-223 (235)
95 PRK09452 potA putrescine/sperm 100.0 2.2E-38 4.7E-43 366.9 27.3 205 166-413 28-233 (375)
96 cd03259 ABC_Carb_Solutes_like 100.0 1.6E-38 3.5E-43 343.7 24.4 210 857-1091 2-213 (213)
97 PRK13537 nodulation ABC transp 100.0 2.6E-38 5.7E-43 359.2 27.3 205 166-414 21-227 (306)
98 COG1137 YhbG ABC-type (unclass 100.0 1.3E-39 2.9E-44 326.7 14.5 205 879-1093 15-223 (243)
99 KOG0055 Multidrug/pheromone ex 100.0 3E-39 6.4E-44 400.2 20.9 258 78-414 951-1213(1228)
100 TIGR01188 drrA daunorubicin re 100.0 1.3E-38 2.7E-43 362.1 24.4 202 880-1093 5-208 (302)
101 TIGR00960 3a0501s02 Type II (G 100.0 1.8E-38 3.8E-43 344.2 24.3 207 856-1084 2-214 (216)
102 KOG0056 Heavy metal exporter H 100.0 8.6E-40 1.9E-44 362.1 13.4 257 78-414 502-761 (790)
103 PRK10851 sulfate/thiosulfate t 100.0 2.9E-38 6.3E-43 364.2 26.4 216 856-1093 3-221 (353)
104 TIGR01288 nodI ATP-binding ABC 100.0 3.3E-38 7.1E-43 358.9 26.4 214 855-1093 4-219 (303)
105 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.1E-38 8.9E-43 342.2 25.9 215 857-1093 2-218 (220)
106 COG4152 ABC-type uncharacteriz 100.0 6.7E-39 1.5E-43 330.6 18.3 234 879-1126 13-258 (300)
107 COG1124 DppF ABC-type dipeptid 100.0 2E-38 4.3E-43 330.8 21.9 205 166-414 21-231 (252)
108 cd03269 ABC_putative_ATPase Th 100.0 4.3E-38 9.4E-43 339.6 25.2 210 856-1091 1-210 (210)
109 COG1122 CbiO ABC-type cobalt t 100.0 1.8E-38 4E-43 342.3 21.9 207 165-414 17-228 (235)
110 cd03265 ABC_DrrA DrrA is the A 100.0 5.1E-38 1.1E-42 341.5 25.6 213 856-1093 1-216 (220)
111 PRK09452 potA putrescine/sperm 100.0 5.1E-38 1.1E-42 363.8 27.0 214 855-1093 14-229 (375)
112 cd03261 ABC_Org_Solvent_Resist 100.0 6.7E-38 1.5E-42 344.1 26.4 206 166-413 14-225 (235)
113 PRK10851 sulfate/thiosulfate t 100.0 6.5E-38 1.4E-42 361.3 27.4 209 166-413 16-225 (353)
114 PRK11153 metN DL-methionine tr 100.0 5.8E-38 1.3E-42 361.7 26.7 217 856-1093 2-225 (343)
115 cd03301 ABC_MalK_N The N-termi 100.0 5.6E-38 1.2E-42 339.5 25.0 211 856-1091 1-213 (213)
116 COG2884 FtsE Predicted ATPase 100.0 1.5E-38 3.3E-43 317.1 18.5 200 165-408 15-220 (223)
117 TIGR01186 proV glycine betaine 100.0 5.3E-38 1.1E-42 361.3 25.9 207 165-414 6-219 (363)
118 TIGR03522 GldA_ABC_ATP gliding 100.0 6.8E-38 1.5E-42 355.7 26.5 212 856-1093 3-216 (301)
119 cd03219 ABC_Mj1267_LivG_branch 100.0 7.4E-38 1.6E-42 344.1 25.5 215 857-1093 2-227 (236)
120 PRK11607 potG putrescine trans 100.0 1.1E-37 2.3E-42 361.8 28.0 205 166-413 33-238 (377)
121 COG0410 LivF ABC-type branched 100.0 5.2E-38 1.1E-42 325.6 22.5 206 165-414 16-226 (237)
122 COG1124 DppF ABC-type dipeptid 100.0 2.8E-38 6.1E-43 329.7 20.6 217 855-1094 3-227 (252)
123 PRK11000 maltose/maltodextrin 100.0 7.7E-38 1.7E-42 363.5 26.5 214 855-1093 3-218 (369)
124 cd03266 ABC_NatA_sodium_export 100.0 6.1E-38 1.3E-42 340.5 24.1 215 856-1091 2-218 (218)
125 PRK09536 btuD corrinoid ABC tr 100.0 6.8E-38 1.5E-42 364.6 25.8 218 855-1094 3-224 (402)
126 cd03296 ABC_CysA_sulfate_impor 100.0 1.1E-37 2.5E-42 343.1 26.3 216 856-1093 3-221 (239)
127 cd03218 ABC_YhbG The ABC trans 100.0 8.8E-38 1.9E-42 342.6 25.1 213 856-1093 1-217 (232)
128 TIGR01186 proV glycine betaine 100.0 6.5E-38 1.4E-42 360.5 25.2 203 879-1093 4-214 (363)
129 PRK11607 potG putrescine trans 100.0 1.4E-37 3E-42 360.9 28.0 214 855-1093 19-234 (377)
130 KOG0062 ATPase component of AB 100.0 3E-37 6.5E-42 347.7 29.7 206 851-1092 358-563 (582)
131 COG2274 SunT ABC-type bacterio 100.0 5E-37 1.1E-41 376.9 34.4 217 849-1093 465-691 (709)
132 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 6.8E-38 1.5E-42 340.1 23.8 208 856-1084 1-216 (218)
133 COG1132 MdlB ABC-type multidru 100.0 2.3E-38 4.9E-43 391.4 22.4 255 78-414 295-552 (567)
134 cd03268 ABC_BcrA_bacitracin_re 100.0 8.5E-38 1.8E-42 336.8 24.0 207 856-1091 1-208 (208)
135 PRK11000 maltose/maltodextrin 100.0 1.4E-37 3E-42 361.3 27.6 205 166-413 17-222 (369)
136 COG3840 ThiQ ABC-type thiamine 100.0 3E-38 6.5E-43 312.0 17.9 210 857-1093 3-214 (231)
137 COG3840 ThiQ ABC-type thiamine 100.0 3.5E-38 7.6E-43 311.6 18.0 201 170-413 17-218 (231)
138 PRK11174 cysteine/glutathione 100.0 5.9E-38 1.3E-42 389.8 24.7 255 78-414 314-572 (588)
139 TIGR02673 FtsE cell division A 100.0 1.1E-37 2.4E-42 337.5 23.6 206 856-1084 2-213 (214)
140 cd03260 ABC_PstB_phosphate_tra 100.0 1.3E-37 2.8E-42 340.0 24.3 214 856-1093 1-224 (227)
141 cd03226 ABC_cobalt_CbiO_domain 100.0 6.4E-38 1.4E-42 336.9 21.4 191 881-1087 13-204 (205)
142 cd03258 ABC_MetN_methionine_tr 100.0 1.4E-37 3.1E-42 341.1 24.5 217 856-1093 2-225 (233)
143 PRK11153 metN DL-methionine tr 100.0 2.6E-37 5.6E-42 356.3 27.8 206 165-413 18-229 (343)
144 cd03256 ABC_PhnC_transporter A 100.0 1.3E-37 2.9E-42 343.2 24.2 216 857-1093 2-229 (241)
145 PRK09493 glnQ glutamine ABC tr 100.0 2.5E-37 5.5E-42 340.6 26.1 214 856-1093 2-220 (240)
146 PRK13637 cbiO cobalt transport 100.0 2E-37 4.2E-42 349.6 25.8 218 856-1093 3-229 (287)
147 cd03234 ABCG_White The White s 100.0 2.5E-37 5.4E-42 337.5 25.8 221 856-1091 4-226 (226)
148 cd03292 ABC_FtsE_transporter F 100.0 1.6E-37 3.6E-42 336.2 24.0 205 857-1084 2-212 (214)
149 PRK11629 lolD lipoprotein tran 100.0 3.8E-37 8.3E-42 337.6 26.9 217 855-1093 5-229 (233)
150 PRK13536 nodulation factor exp 100.0 2.3E-37 5.1E-42 354.9 25.9 205 166-414 55-261 (340)
151 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.7E-37 6E-42 340.7 25.1 213 857-1093 2-220 (242)
152 PRK11264 putative amino-acid A 100.0 3.5E-37 7.7E-42 341.6 26.1 214 856-1093 4-228 (250)
153 PRK13637 cbiO cobalt transport 100.0 4E-37 8.7E-42 347.0 26.8 218 165-425 20-248 (287)
154 cd03263 ABC_subfamily_A The AB 100.0 2.6E-37 5.7E-42 336.0 24.4 214 856-1093 1-216 (220)
155 cd03259 ABC_Carb_Solutes_like 100.0 2.9E-37 6.3E-42 333.9 24.3 199 166-407 14-213 (213)
156 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.4E-37 5.3E-42 345.9 24.5 203 879-1093 35-245 (269)
157 PRK11248 tauB taurine transpor 100.0 4.7E-37 1E-41 340.7 26.3 212 856-1093 2-215 (255)
158 cd03224 ABC_TM1139_LivF_branch 100.0 2.4E-37 5.3E-42 336.8 23.6 211 856-1093 1-216 (222)
159 PRK13647 cbiO cobalt transport 100.0 3.4E-37 7.4E-42 345.5 25.3 215 855-1093 4-222 (274)
160 cd03265 ABC_DrrA DrrA is the A 100.0 4.1E-37 8.9E-42 334.4 25.1 204 166-412 14-219 (220)
161 PRK13634 cbiO cobalt transport 100.0 3.6E-37 7.7E-42 348.0 25.1 218 856-1093 3-230 (290)
162 cd03296 ABC_CysA_sulfate_impor 100.0 7.3E-37 1.6E-41 336.7 26.7 209 166-413 16-225 (239)
163 PRK11831 putative ABC transpor 100.0 5.9E-37 1.3E-41 343.0 26.4 215 855-1093 7-228 (269)
164 COG0411 LivG ABC-type branched 100.0 7.9E-38 1.7E-42 326.7 18.0 221 163-414 15-239 (250)
165 TIGR01188 drrA daunorubicin re 100.0 2.7E-37 6E-42 351.1 24.1 206 165-414 6-213 (302)
166 COG0411 LivG ABC-type branched 100.0 1.5E-37 3.3E-42 324.5 20.0 207 879-1094 15-235 (250)
167 TIGR02315 ABC_phnC phosphonate 100.0 2.1E-37 4.6E-42 342.0 22.3 217 856-1093 2-230 (243)
168 PRK13651 cobalt transporter AT 100.0 4.4E-37 9.6E-42 348.4 25.3 218 856-1093 3-249 (305)
169 cd03264 ABC_drug_resistance_li 100.0 4.7E-37 1E-41 331.8 24.3 209 856-1091 1-211 (211)
170 KOG0058 Peptide exporter, ABC 100.0 3.7E-38 8E-43 371.1 16.8 222 846-1092 455-685 (716)
171 cd03262 ABC_HisP_GlnQ_permease 100.0 4.4E-37 9.5E-42 332.6 23.8 205 857-1084 2-211 (213)
172 cd03235 ABC_Metallic_Cations A 100.0 2.7E-37 5.8E-42 334.2 22.0 199 881-1091 12-213 (213)
173 TIGR01288 nodI ATP-binding ABC 100.0 8E-37 1.7E-41 347.5 26.7 205 166-414 18-224 (303)
174 PRK13643 cbiO cobalt transport 100.0 6.2E-37 1.3E-41 345.7 25.6 217 856-1093 2-228 (288)
175 PRK13634 cbiO cobalt transport 100.0 6.9E-37 1.5E-41 345.6 25.9 218 165-425 20-249 (290)
176 cd03225 ABC_cobalt_CbiO_domain 100.0 3.7E-37 8E-42 332.7 22.5 193 881-1084 14-210 (211)
177 COG0410 LivF ABC-type branched 100.0 3.7E-37 7.9E-42 319.3 21.4 212 856-1093 4-221 (237)
178 PRK13636 cbiO cobalt transport 100.0 7.1E-37 1.5E-41 344.5 25.7 215 855-1093 5-226 (283)
179 PRK10619 histidine/lysine/argi 100.0 1.2E-36 2.5E-41 338.7 27.0 215 855-1093 5-236 (257)
180 PRK13631 cbiO cobalt transport 100.0 6E-37 1.3E-41 349.3 25.2 218 855-1093 21-260 (320)
181 cd03257 ABC_NikE_OppD_transpor 100.0 6E-37 1.3E-41 335.1 24.2 217 856-1091 2-228 (228)
182 PRK10908 cell division protein 100.0 6.9E-37 1.5E-41 333.1 24.6 208 856-1087 2-215 (222)
183 cd03258 ABC_MetN_methionine_tr 100.0 9E-37 1.9E-41 334.8 25.5 205 166-413 19-229 (233)
184 PRK10895 lipopolysaccharide AB 100.0 7.3E-37 1.6E-41 337.2 24.8 214 856-1093 4-221 (241)
185 PRK13643 cbiO cobalt transport 100.0 1.1E-36 2.5E-41 343.5 26.8 224 166-433 20-255 (288)
186 cd03219 ABC_Mj1267_LivG_branch 100.0 8.9E-37 1.9E-41 335.5 25.3 214 166-413 14-231 (236)
187 TIGR00972 3a0107s01c2 phosphat 100.0 1.2E-36 2.6E-41 336.7 26.2 214 856-1093 2-227 (247)
188 cd03301 ABC_MalK_N The N-termi 100.0 1E-36 2.2E-41 329.7 25.1 199 166-407 14-213 (213)
189 PRK13646 cbiO cobalt transport 100.0 7.3E-37 1.6E-41 344.9 24.6 217 856-1093 3-230 (286)
190 TIGR00960 3a0501s02 Type II (G 100.0 6.4E-37 1.4E-41 332.0 23.1 194 166-403 17-216 (216)
191 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.4E-36 3E-41 330.3 25.4 201 165-410 17-219 (220)
192 PRK13650 cbiO cobalt transport 100.0 8.2E-37 1.8E-41 343.3 24.3 216 855-1093 4-224 (279)
193 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.8E-36 4E-41 332.9 26.4 212 856-1093 2-216 (236)
194 COG4559 ABC-type hemin transpo 100.0 4E-37 8.7E-42 311.5 19.3 207 166-414 15-230 (259)
195 PRK11247 ssuB aliphatic sulfon 100.0 1E-36 2.3E-41 337.5 24.5 206 855-1093 12-218 (257)
196 TIGR02211 LolD_lipo_ex lipopro 100.0 1.3E-36 2.9E-41 330.7 24.7 210 856-1087 2-219 (221)
197 cd03260 ABC_PstB_phosphate_tra 100.0 8.4E-37 1.8E-41 333.7 23.2 203 166-411 14-226 (227)
198 cd03218 ABC_YhbG The ABC trans 100.0 1.6E-36 3.5E-41 332.6 25.5 204 166-413 14-221 (232)
199 TIGR03522 GldA_ABC_ATP gliding 100.0 2E-36 4.4E-41 343.6 27.1 204 166-414 16-221 (301)
200 PRK11614 livF leucine/isoleuci 100.0 9.6E-37 2.1E-41 335.4 23.7 212 855-1093 5-221 (237)
201 TIGR03740 galliderm_ABC gallid 100.0 2E-36 4.4E-41 329.6 26.0 208 857-1094 2-209 (223)
202 PRK13644 cbiO cobalt transport 100.0 1.1E-36 2.3E-41 341.5 24.3 213 856-1093 2-219 (274)
203 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 5.2E-37 1.1E-41 387.3 24.4 253 78-414 418-673 (686)
204 PRK13641 cbiO cobalt transport 100.0 1.4E-36 3E-41 342.9 25.2 218 856-1093 3-229 (287)
205 COG1137 YhbG ABC-type (unclass 100.0 7E-38 1.5E-42 314.3 13.0 210 163-414 15-228 (243)
206 TIGR03005 ectoine_ehuA ectoine 100.0 1.8E-36 4E-41 336.2 25.8 214 856-1093 1-231 (252)
207 PRK15079 oligopeptide ABC tran 100.0 2E-36 4.4E-41 346.2 26.7 229 855-1093 8-246 (331)
208 PRK11124 artP arginine transpo 100.0 2E-36 4.4E-41 333.8 25.6 213 856-1093 3-225 (242)
209 cd03263 ABC_subfamily_A The AB 100.0 1.4E-36 3E-41 330.3 23.8 203 165-412 15-219 (220)
210 cd03224 ABC_TM1139_LivF_branch 100.0 1.7E-36 3.8E-41 330.1 24.6 202 166-413 14-220 (222)
211 PRK13652 cbiO cobalt transport 100.0 2E-36 4.4E-41 339.9 25.7 214 856-1093 4-222 (277)
212 PRK13650 cbiO cobalt transport 100.0 2.7E-36 5.9E-41 339.1 26.7 215 166-424 21-242 (279)
213 COG4988 CydD ABC-type transpor 100.0 8E-37 1.7E-41 354.1 22.8 255 79-414 285-543 (559)
214 PRK13548 hmuV hemin importer A 100.0 2.2E-36 4.8E-41 336.3 25.5 213 856-1093 3-225 (258)
215 cd03256 ABC_PhnC_transporter A 100.0 2.1E-36 4.5E-41 333.7 25.1 213 166-413 15-233 (241)
216 PRK11831 putative ABC transpor 100.0 3.7E-36 8E-41 336.6 27.3 206 166-413 21-232 (269)
217 PRK14247 phosphate ABC transpo 100.0 3.7E-36 8E-41 333.5 26.9 217 855-1093 3-229 (250)
218 PRK11300 livG leucine/isoleuci 100.0 2.3E-36 5.1E-41 336.1 25.2 217 855-1093 5-238 (255)
219 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3E-36 6.5E-41 332.4 25.9 205 166-413 15-224 (242)
220 PRK13647 cbiO cobalt transport 100.0 3.8E-36 8.3E-41 337.0 27.1 203 166-412 19-225 (274)
221 PRK13631 cbiO cobalt transport 100.0 2.7E-36 5.8E-41 344.0 26.2 217 165-425 39-279 (320)
222 cd03269 ABC_putative_ATPase Th 100.0 2.1E-36 4.6E-41 326.5 24.0 197 166-407 14-210 (210)
223 PRK13651 cobalt transporter AT 100.0 2.2E-36 4.8E-41 342.7 25.3 205 165-413 20-253 (305)
224 PRK14267 phosphate ABC transpo 100.0 3.8E-36 8.2E-41 334.0 26.4 217 855-1093 4-232 (253)
225 TIGR01978 sufC FeS assembly AT 100.0 3.6E-36 7.7E-41 332.3 26.0 219 856-1093 1-229 (243)
226 PRK14268 phosphate ABC transpo 100.0 4.2E-36 9E-41 334.4 26.7 214 855-1093 12-237 (258)
227 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.7E-36 3.7E-41 329.2 22.7 195 165-403 17-218 (218)
228 PRK14273 phosphate ABC transpo 100.0 4.1E-36 8.9E-41 333.8 26.2 215 855-1093 7-233 (254)
229 TIGR03411 urea_trans_UrtD urea 100.0 3.6E-36 7.8E-41 332.0 25.5 215 856-1093 3-226 (242)
230 cd03294 ABC_Pro_Gly_Bertaine T 100.0 3.2E-36 6.9E-41 337.0 25.3 208 163-413 35-249 (269)
231 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.2E-36 4.7E-41 326.6 23.2 207 857-1090 2-210 (211)
232 PRK11629 lolD lipoprotein tran 100.0 5.5E-36 1.2E-40 328.4 26.7 201 165-409 22-229 (233)
233 PRK09536 btuD corrinoid ABC tr 100.0 3.2E-36 7E-41 350.5 26.2 208 166-413 17-227 (402)
234 PRK11231 fecE iron-dicitrate t 100.0 2.9E-36 6.3E-41 335.1 24.8 217 856-1094 3-223 (255)
235 COG4987 CydC ABC-type transpor 100.0 2.8E-37 6.1E-42 351.4 16.7 257 77-414 302-561 (573)
236 PRK13635 cbiO cobalt transport 100.0 2.5E-36 5.5E-41 339.2 24.3 215 855-1093 5-224 (279)
237 PRK15079 oligopeptide ABC tran 100.0 4.8E-36 1.1E-40 343.1 27.0 208 165-413 34-250 (331)
238 COG4525 TauB ABC-type taurine 100.0 1.1E-36 2.5E-41 303.7 18.9 200 881-1093 18-219 (259)
239 PRK13646 cbiO cobalt transport 100.0 2.9E-36 6.4E-41 340.0 24.6 206 165-413 20-234 (286)
240 TIGR02315 ABC_phnC phosphonate 100.0 2.4E-36 5.3E-41 333.6 23.4 212 166-412 16-233 (243)
241 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 7.3E-36 1.6E-40 328.1 27.0 205 166-414 15-221 (236)
242 PRK14241 phosphate transporter 100.0 6.1E-36 1.3E-40 333.1 26.7 217 855-1093 4-237 (258)
243 PRK13638 cbiO cobalt transport 100.0 3E-36 6.6E-41 337.8 24.4 213 856-1093 2-220 (271)
244 PRK10070 glycine betaine trans 100.0 2.7E-36 5.9E-41 350.9 24.8 202 880-1093 40-249 (400)
245 PRK10253 iron-enterobactin tra 100.0 3.4E-36 7.4E-41 336.2 24.6 217 855-1093 7-228 (265)
246 PRK10584 putative ABC transpor 100.0 5.9E-36 1.3E-40 327.2 26.0 213 855-1089 6-226 (228)
247 PRK10575 iron-hydroxamate tran 100.0 4.4E-36 9.5E-41 335.4 25.3 217 855-1093 11-232 (265)
248 cd03268 ABC_BcrA_bacitracin_re 100.0 3.5E-36 7.5E-41 324.3 23.6 194 166-407 14-208 (208)
249 COG4559 ABC-type hemin transpo 100.0 1.8E-36 3.9E-41 306.8 19.8 216 856-1094 2-226 (259)
250 cd03233 ABC_PDR_domain1 The pl 100.0 4E-36 8.6E-41 321.8 23.7 195 118-407 3-202 (202)
251 TIGR03375 type_I_sec_LssB type 100.0 1.2E-36 2.5E-41 384.6 23.1 258 78-414 428-688 (694)
252 COG4618 ArpD ABC-type protease 100.0 7.8E-37 1.7E-41 344.2 19.0 256 81-417 305-563 (580)
253 PRK11160 cysteine/glutathione 100.0 1.4E-36 3E-41 375.0 23.2 256 78-414 304-562 (574)
254 PRK13649 cbiO cobalt transport 100.0 4.6E-36 1E-40 338.0 25.4 217 856-1093 3-229 (280)
255 PRK10744 pstB phosphate transp 100.0 6.6E-36 1.4E-40 333.1 26.4 219 851-1093 9-239 (260)
256 cd03266 ABC_NatA_sodium_export 100.0 4E-36 8.7E-41 326.3 23.9 198 166-407 19-218 (218)
257 PRK14245 phosphate ABC transpo 100.0 7.8E-36 1.7E-40 330.8 26.7 219 855-1093 3-229 (250)
258 PRK13639 cbiO cobalt transport 100.0 5.4E-36 1.2E-40 336.2 25.6 214 856-1093 2-221 (275)
259 PRK14242 phosphate transporter 100.0 8.2E-36 1.8E-40 331.3 26.7 220 854-1093 5-232 (253)
260 PRK11264 putative amino-acid A 100.0 6.5E-36 1.4E-40 331.5 25.8 204 166-413 17-232 (250)
261 TIGR02769 nickel_nikE nickel i 100.0 6E-36 1.3E-40 334.3 25.7 223 856-1093 3-235 (265)
262 PRK09473 oppD oligopeptide tra 100.0 1.1E-35 2.4E-40 340.3 28.3 214 165-414 29-251 (330)
263 PRK09493 glnQ glutamine ABC tr 100.0 8E-36 1.7E-40 328.7 26.1 204 166-413 15-224 (240)
264 PRK10790 putative multidrug tr 100.0 3.7E-36 8E-41 373.8 26.3 253 78-414 308-563 (592)
265 PRK13635 cbiO cobalt transport 100.0 7.4E-36 1.6E-40 335.4 26.1 205 166-414 21-229 (279)
266 TIGR03873 F420-0_ABC_ATP propo 100.0 5.2E-36 1.1E-40 333.3 24.6 216 856-1093 2-221 (256)
267 cd03234 ABCG_White The White s 100.0 5.6E-36 1.2E-40 326.8 24.4 203 165-407 20-226 (226)
268 TIGR03415 ABC_choXWV_ATP choli 100.0 4.8E-36 1E-40 346.4 24.9 203 879-1093 35-249 (382)
269 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.3E-36 2.9E-41 385.3 22.2 261 78-414 436-700 (710)
270 cd03232 ABC_PDR_domain2 The pl 100.0 6.2E-36 1.3E-40 317.8 23.7 190 855-1091 3-192 (192)
271 PRK10070 glycine betaine trans 100.0 5.8E-36 1.3E-40 348.2 25.5 206 165-413 41-253 (400)
272 TIGR03410 urea_trans_UrtE urea 100.0 5E-36 1.1E-40 328.2 23.6 210 856-1093 1-216 (230)
273 TIGR01193 bacteriocin_ABC ABC- 100.0 1.4E-36 3E-41 384.8 22.1 257 78-414 438-697 (708)
274 PRK09984 phosphonate/organopho 100.0 6.7E-36 1.4E-40 333.6 24.9 220 855-1094 4-238 (262)
275 cd03226 ABC_cobalt_CbiO_domain 100.0 3.2E-36 6.9E-41 323.8 21.4 191 166-404 14-205 (205)
276 PRK14237 phosphate transporter 100.0 1.5E-35 3.2E-40 331.4 27.6 225 849-1093 14-246 (267)
277 PRK11308 dppF dipeptide transp 100.0 1.1E-35 2.4E-40 339.9 27.2 225 855-1093 5-239 (327)
278 PRK11176 lipid transporter ATP 100.0 2.5E-36 5.3E-41 375.0 23.6 257 78-414 308-567 (582)
279 cd03264 ABC_drug_resistance_li 100.0 5.5E-36 1.2E-40 323.5 23.3 196 166-407 14-211 (211)
280 PRK13636 cbiO cobalt transport 100.0 9E-36 1.9E-40 335.6 25.9 206 166-414 20-231 (283)
281 cd03300 ABC_PotA_N PotA is an 100.0 9.7E-36 2.1E-40 326.2 25.4 213 856-1093 1-215 (232)
282 COG4175 ProV ABC-type proline/ 100.0 1.4E-36 3.1E-41 324.0 18.1 222 164-436 40-268 (386)
283 PRK11022 dppD dipeptide transp 100.0 1.5E-35 3.2E-40 339.1 27.5 220 856-1093 4-238 (326)
284 cd03233 ABC_PDR_domain1 The pl 100.0 9.6E-36 2.1E-40 318.9 24.3 196 855-1091 3-202 (202)
285 PRK14235 phosphate transporter 100.0 1.4E-35 3E-40 331.6 26.5 216 855-1093 19-246 (267)
286 TIGR03608 L_ocin_972_ABC putat 100.0 6.6E-36 1.4E-40 321.7 23.0 189 881-1081 11-206 (206)
287 TIGR03415 ABC_choXWV_ATP choli 100.0 7.6E-36 1.7E-40 344.7 25.1 209 163-414 35-254 (382)
288 PRK13632 cbiO cobalt transport 100.0 9.1E-36 2E-40 333.8 25.0 215 855-1093 7-226 (271)
289 TIGR01277 thiQ thiamine ABC tr 100.0 8.5E-36 1.8E-40 322.4 23.8 209 857-1092 2-212 (213)
290 PRK11247 ssuB aliphatic sulfon 100.0 9.5E-36 2.1E-40 329.9 24.4 194 166-410 26-219 (257)
291 PRK09473 oppD oligopeptide tra 100.0 1.6E-35 3.4E-40 339.1 27.0 224 855-1093 12-246 (330)
292 PRK11248 tauB taurine transpor 100.0 1.5E-35 3.3E-40 328.6 26.1 200 166-410 15-216 (255)
293 PRK14256 phosphate ABC transpo 100.0 2.7E-35 5.9E-40 326.8 28.1 220 855-1093 4-231 (252)
294 TIGR01184 ntrCD nitrate transp 100.0 5.4E-36 1.2E-40 327.5 22.1 198 884-1093 1-199 (230)
295 PRK14269 phosphate ABC transpo 100.0 1.4E-35 3E-40 327.9 25.5 219 856-1093 3-225 (246)
296 TIGR03410 urea_trans_UrtE urea 100.0 1.1E-35 2.3E-40 325.7 24.4 201 166-412 14-219 (230)
297 cd03257 ABC_NikE_OppD_transpor 100.0 1.4E-35 3E-40 324.3 25.3 201 166-407 19-228 (228)
298 PRK13648 cbiO cobalt transport 100.0 1.2E-35 2.6E-40 332.6 25.3 215 855-1093 7-226 (269)
299 PRK13645 cbiO cobalt transport 100.0 9.5E-36 2.1E-40 336.8 24.7 219 855-1093 6-235 (289)
300 TIGR00968 3a0106s01 sulfate AB 100.0 1.4E-35 3E-40 325.9 25.3 213 856-1093 1-215 (237)
301 PRK13633 cobalt transporter AT 100.0 8.9E-36 1.9E-40 335.3 24.3 219 855-1093 4-228 (280)
302 PTZ00265 multidrug resistance 100.0 1.9E-36 4E-41 402.2 21.9 263 78-414 1126-1452(1466)
303 PRK14250 phosphate ABC transpo 100.0 8E-36 1.7E-40 328.7 23.4 209 855-1093 3-216 (241)
304 TIGR00958 3a01208 Conjugate Tr 100.0 2.7E-36 5.9E-41 380.6 22.4 256 78-414 444-702 (711)
305 PRK13549 xylose transporter AT 100.0 7.9E-36 1.7E-40 363.4 25.6 220 855-1094 5-228 (506)
306 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.6E-34 3.4E-39 364.8 38.1 209 854-1093 450-668 (686)
307 PRK13640 cbiO cobalt transport 100.0 9.5E-36 2.1E-40 335.2 24.1 217 855-1093 5-227 (282)
308 PRK14259 phosphate ABC transpo 100.0 1.6E-35 3.5E-40 331.2 25.8 215 854-1093 12-248 (269)
309 PRK13547 hmuV hemin importer A 100.0 1.2E-35 2.6E-40 331.8 24.5 218 856-1093 2-239 (272)
310 PRK11308 dppF dipeptide transp 100.0 2.4E-35 5.2E-40 337.2 27.6 208 165-414 28-244 (327)
311 PRK10895 lipopolysaccharide AB 100.0 1.5E-35 3.3E-40 326.7 24.9 205 166-413 17-225 (241)
312 TIGR03005 ectoine_ehuA ectoine 100.0 1.7E-35 3.6E-40 328.5 25.4 205 166-413 14-235 (252)
313 PRK11614 livF leucine/isoleuci 100.0 1.4E-35 3.1E-40 326.1 24.4 202 166-413 19-225 (237)
314 TIGR00972 3a0107s01c2 phosphat 100.0 2.4E-35 5.1E-40 326.3 26.3 206 166-413 15-231 (247)
315 cd03267 ABC_NatA_like Similar 100.0 1.4E-35 3E-40 325.6 24.3 201 879-1091 32-236 (236)
316 PRK15093 antimicrobial peptide 100.0 2.3E-35 5E-40 338.6 27.1 223 855-1093 3-243 (330)
317 PRK11022 dppD dipeptide transp 100.0 2.9E-35 6.3E-40 336.7 27.8 214 165-414 20-243 (326)
318 COG0444 DppD ABC-type dipeptid 100.0 2.1E-35 4.5E-40 322.0 25.2 215 164-413 17-242 (316)
319 TIGR02211 LolD_lipo_ex lipopro 100.0 1.6E-35 3.5E-40 322.2 24.4 196 165-404 18-220 (221)
320 cd03292 ABC_FtsE_transporter F 100.0 1.2E-35 2.5E-40 321.7 23.1 194 166-403 15-214 (214)
321 PRK13632 cbiO cobalt transport 100.0 1.5E-35 3.3E-40 332.0 24.8 204 166-413 23-230 (271)
322 cd03299 ABC_ModC_like Archeal 100.0 2.1E-35 4.6E-40 324.0 25.4 211 857-1093 2-214 (235)
323 PRK13641 cbiO cobalt transport 100.0 1.6E-35 3.5E-40 334.2 24.9 205 165-413 20-233 (287)
324 cd03267 ABC_NatA_like Similar 100.0 2.2E-35 4.8E-40 324.0 25.1 233 119-407 1-236 (236)
325 cd03297 ABC_ModC_molybdenum_tr 100.0 1.7E-35 3.7E-40 320.3 23.8 191 886-1091 16-214 (214)
326 TIGR02673 FtsE cell division A 100.0 1.6E-35 3.4E-40 320.7 23.5 193 166-402 16-214 (214)
327 PRK10771 thiQ thiamine transpo 100.0 1.4E-35 2.9E-40 325.1 23.2 211 856-1093 2-214 (232)
328 PRK15112 antimicrobial peptide 100.0 1.7E-35 3.7E-40 330.9 24.4 224 855-1093 4-234 (267)
329 PRK13633 cobalt transporter AT 100.0 2.3E-35 5E-40 332.0 25.6 206 165-414 23-233 (280)
330 PRK14273 phosphate ABC transpo 100.0 3.1E-35 6.8E-40 326.7 26.2 206 166-413 21-237 (254)
331 COG4181 Predicted ABC-type tra 100.0 6.6E-36 1.4E-40 292.2 18.1 197 879-1088 21-225 (228)
332 PRK13652 cbiO cobalt transport 100.0 2.8E-35 6E-40 330.8 25.9 205 166-413 18-226 (277)
333 PRK13548 hmuV hemin importer A 100.0 3.1E-35 6.7E-40 327.1 25.9 205 166-413 16-229 (258)
334 TIGR02142 modC_ABC molybdenum 100.0 1.9E-35 4.1E-40 342.6 25.1 194 886-1093 15-216 (354)
335 PRK11300 livG leucine/isoleuci 100.0 3.4E-35 7.4E-40 326.8 26.2 220 166-413 19-242 (255)
336 PRK14239 phosphate transporter 100.0 3.5E-35 7.6E-40 326.1 26.2 215 855-1093 5-231 (252)
337 PRK14270 phosphate ABC transpo 100.0 3.6E-35 7.8E-40 325.7 26.2 215 855-1093 4-230 (251)
338 TIGR03411 urea_trans_UrtD urea 100.0 3.7E-35 8E-40 323.9 26.0 210 166-412 16-229 (242)
339 PRK11144 modC molybdate transp 100.0 2.1E-35 4.6E-40 341.6 25.1 190 886-1093 16-213 (352)
340 PRK13648 cbiO cobalt transport 100.0 3.5E-35 7.6E-40 328.8 26.0 215 166-424 23-244 (269)
341 PRK14240 phosphate transporter 100.0 3.8E-35 8.3E-40 325.3 26.1 215 855-1093 3-229 (250)
342 PRK14274 phosphate ABC transpo 100.0 4E-35 8.7E-40 326.7 26.4 219 855-1093 12-238 (259)
343 PRK13644 cbiO cobalt transport 100.0 2.5E-35 5.3E-40 330.5 24.8 203 166-413 16-223 (274)
344 PRK13649 cbiO cobalt transport 100.0 4.1E-35 9E-40 330.3 26.6 204 166-413 21-233 (280)
345 PRK14268 phosphate ABC transpo 100.0 4.4E-35 9.5E-40 326.1 26.4 205 166-413 26-241 (258)
346 PRK10619 histidine/lysine/argi 100.0 3.8E-35 8.3E-40 326.5 25.9 204 166-413 19-240 (257)
347 PRK14244 phosphate ABC transpo 100.0 3.8E-35 8.2E-40 325.5 25.6 218 857-1093 7-232 (251)
348 PRK00349 uvrA excinuclease ABC 100.0 5.2E-34 1.1E-38 359.0 39.1 122 956-1093 792-922 (943)
349 PRK14250 phosphate ABC transpo 100.0 3.3E-35 7.3E-40 323.7 25.0 200 166-413 17-220 (241)
350 cd03213 ABCG_EPDR ABCG transpo 100.0 3.1E-35 6.8E-40 312.9 23.8 190 855-1091 3-194 (194)
351 PRK14262 phosphate ABC transpo 100.0 4.6E-35 9.9E-40 324.7 26.1 219 855-1093 3-229 (250)
352 PRK14257 phosphate ABC transpo 100.0 4.2E-35 9.1E-40 335.1 26.5 210 166-413 96-312 (329)
353 PRK14257 phosphate ABC transpo 100.0 5.1E-35 1.1E-39 334.4 27.2 222 854-1093 79-308 (329)
354 PRK10908 cell division protein 100.0 3.6E-35 7.7E-40 319.7 24.7 195 166-404 16-216 (222)
355 PRK13642 cbiO cobalt transport 100.0 2.9E-35 6.4E-40 330.6 24.7 216 855-1093 4-224 (277)
356 PRK14260 phosphate ABC transpo 100.0 4.5E-35 9.9E-40 326.2 26.0 216 855-1093 7-238 (259)
357 TIGR02769 nickel_nikE nickel i 100.0 4.5E-35 9.7E-40 327.2 25.9 206 165-413 24-239 (265)
358 COG4525 TauB ABC-type taurine 100.0 2.1E-35 4.5E-40 294.6 20.5 206 165-415 18-225 (259)
359 TIGR02982 heterocyst_DevA ABC 100.0 3.5E-35 7.6E-40 319.2 24.1 209 856-1084 2-217 (220)
360 PRK14258 phosphate ABC transpo 100.0 6E-35 1.3E-39 325.5 26.5 221 855-1093 7-240 (261)
361 PRK11124 artP arginine transpo 100.0 3.9E-35 8.5E-40 323.6 24.7 203 166-412 16-228 (242)
362 PRK10418 nikD nickel transport 100.0 4.5E-35 9.8E-40 325.3 25.3 214 854-1093 3-225 (254)
363 cd03300 ABC_PotA_N PotA is an 100.0 7E-35 1.5E-39 319.4 26.5 205 166-413 14-219 (232)
364 PRK13639 cbiO cobalt transport 100.0 8.1E-35 1.8E-39 326.6 27.6 204 166-413 16-225 (275)
365 PRK13638 cbiO cobalt transport 100.0 6.1E-35 1.3E-39 327.2 26.5 204 166-413 15-224 (271)
366 PRK10584 putative ABC transpor 100.0 5.4E-35 1.2E-39 319.6 25.4 197 166-406 24-227 (228)
367 KOG0066 eIF2-interacting prote 100.0 1.3E-34 2.7E-39 316.8 28.0 202 852-1093 583-786 (807)
368 PRK13640 cbiO cobalt transport 100.0 5E-35 1.1E-39 329.4 25.8 208 166-414 21-232 (282)
369 PRK00635 excinuclease ABC subu 100.0 1.2E-33 2.6E-38 368.0 42.4 134 952-1093 759-901 (1809)
370 COG4175 ProV ABC-type proline/ 100.0 6.3E-36 1.4E-40 319.1 17.3 202 881-1094 41-250 (386)
371 PRK14236 phosphate transporter 100.0 7.3E-35 1.6E-39 326.7 26.9 217 853-1093 23-251 (272)
372 PRK11701 phnK phosphonate C-P 100.0 5.4E-35 1.2E-39 325.5 25.6 215 855-1093 6-236 (258)
373 TIGR01193 bacteriocin_ABC ABC- 100.0 6.3E-34 1.4E-38 360.5 38.8 212 853-1093 471-692 (708)
374 PRK14253 phosphate ABC transpo 100.0 5.9E-35 1.3E-39 323.6 25.8 219 855-1093 3-228 (249)
375 KOG0057 Mitochondrial Fe/S clu 100.0 6.1E-36 1.3E-40 340.6 18.2 211 852-1092 348-568 (591)
376 PRK14247 phosphate ABC transpo 100.0 7.8E-35 1.7E-39 322.8 26.5 212 166-413 17-233 (250)
377 PRK13543 cytochrome c biogenes 100.0 3.9E-35 8.4E-40 317.3 23.4 201 855-1082 11-211 (214)
378 TIGR03740 galliderm_ABC gallid 100.0 6.1E-35 1.3E-39 318.1 25.0 196 166-410 14-209 (223)
379 PRK10762 D-ribose transporter 100.0 3.3E-35 7.1E-40 357.6 25.4 218 855-1094 4-226 (501)
380 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.2E-33 2.6E-38 358.3 40.8 210 854-1093 476-695 (710)
381 TIGR01978 sufC FeS assembly AT 100.0 6.8E-35 1.5E-39 322.1 25.6 212 166-413 14-233 (243)
382 TIGR02770 nickel_nikD nickel i 100.0 3.1E-35 6.7E-40 321.8 22.6 201 883-1093 1-210 (230)
383 PRK14272 phosphate ABC transpo 100.0 9.1E-35 2E-39 322.8 26.7 216 855-1093 4-231 (252)
384 PRK14267 phosphate ABC transpo 100.0 7.6E-35 1.7E-39 323.5 26.1 212 166-413 18-236 (253)
385 PRK13645 cbiO cobalt transport 100.0 4.9E-35 1.1E-39 331.0 25.0 205 166-413 25-239 (289)
386 PRK14242 phosphate transporter 100.0 7.4E-35 1.6E-39 323.6 25.9 207 166-413 20-236 (253)
387 cd03298 ABC_ThiQ_thiamine_tran 100.0 4.9E-35 1.1E-39 316.0 23.7 195 170-407 16-211 (211)
388 PRK13538 cytochrome c biogenes 100.0 3.5E-35 7.7E-40 315.3 22.4 199 856-1081 2-202 (204)
389 PRK14263 phosphate ABC transpo 100.0 9.7E-35 2.1E-39 323.3 26.7 219 854-1093 7-240 (261)
390 PRK09700 D-allose transporter 100.0 3.3E-35 7.2E-40 358.5 25.1 218 855-1094 5-230 (510)
391 PRK14249 phosphate ABC transpo 100.0 8.1E-35 1.8E-39 322.8 26.0 219 855-1093 4-230 (251)
392 TIGR01842 type_I_sec_PrtD type 100.0 2.5E-35 5.4E-40 362.3 24.1 256 78-414 284-542 (544)
393 PRK10575 iron-hydroxamate tran 100.0 6.3E-35 1.4E-39 326.0 25.0 209 166-413 25-236 (265)
394 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 6.3E-35 1.4E-39 317.7 24.2 193 878-1091 32-224 (224)
395 PRK10253 iron-enterobactin tra 100.0 6.9E-35 1.5E-39 325.8 25.1 208 166-413 21-232 (265)
396 COG4988 CydD ABC-type transpor 100.0 1.7E-35 3.6E-40 343.1 20.7 213 852-1093 317-538 (559)
397 COG0444 DppD ABC-type dipeptid 100.0 8.6E-35 1.9E-39 317.1 25.1 224 856-1093 2-238 (316)
398 PRK11144 modC molybdate transp 100.0 3.4E-35 7.3E-40 339.9 23.3 195 170-413 16-217 (352)
399 cd03231 ABC_CcmA_heme_exporter 100.0 3.4E-35 7.3E-40 314.6 21.6 195 857-1081 2-198 (201)
400 PRK15093 antimicrobial peptide 100.0 1.1E-34 2.3E-39 333.2 27.1 217 165-413 20-247 (330)
401 cd03299 ABC_ModC_like Archeal 100.0 9.8E-35 2.1E-39 318.8 25.6 204 167-413 14-218 (235)
402 PRK10771 thiQ thiamine transpo 100.0 8.4E-35 1.8E-39 318.8 24.9 201 170-413 17-218 (232)
403 PRK09984 phosphonate/organopho 100.0 7.2E-35 1.6E-39 325.2 24.8 215 166-412 18-240 (262)
404 PRK14248 phosphate ABC transpo 100.0 9.9E-35 2.1E-39 325.1 25.8 215 855-1093 21-247 (268)
405 PRK14275 phosphate ABC transpo 100.0 1E-34 2.2E-39 327.3 26.2 215 855-1093 39-265 (286)
406 PRK15056 manganese/iron transp 100.0 6.6E-35 1.4E-39 327.0 24.4 218 855-1094 6-226 (272)
407 cd03225 ABC_cobalt_CbiO_domain 100.0 4.8E-35 1E-39 316.2 22.3 194 165-402 14-211 (211)
408 PRK14235 phosphate transporter 100.0 1.5E-34 3.3E-39 323.2 27.0 208 166-413 33-250 (267)
409 PRK14261 phosphate ABC transpo 100.0 1.2E-34 2.6E-39 321.8 26.0 215 855-1093 6-232 (253)
410 PRK11231 fecE iron-dicitrate t 100.0 7.4E-35 1.6E-39 323.9 24.2 208 166-413 16-226 (255)
411 PRK14237 phosphate transporter 100.0 2.2E-34 4.7E-39 322.0 28.1 230 112-413 14-250 (267)
412 PRK14271 phosphate ABC transpo 100.0 1.4E-34 3E-39 324.6 26.6 219 855-1093 21-246 (276)
413 COG5265 ATM1 ABC-type transpor 100.0 4.9E-36 1.1E-40 330.7 14.4 253 82-414 230-486 (497)
414 PRK14265 phosphate ABC transpo 100.0 1.6E-34 3.5E-39 323.9 27.0 216 853-1093 18-253 (274)
415 TIGR00968 3a0106s01 sulfate AB 100.0 1.4E-34 3E-39 318.0 25.8 205 166-413 14-219 (237)
416 PRK10744 pstB phosphate transp 100.0 1.4E-34 3E-39 322.5 26.1 229 113-413 8-243 (260)
417 PRK14251 phosphate ABC transpo 100.0 1.3E-34 2.9E-39 321.2 25.8 215 855-1093 4-230 (251)
418 PRK15439 autoinducer 2 ABC tra 100.0 6.3E-35 1.4E-39 355.3 25.3 211 855-1094 11-225 (510)
419 TIGR01277 thiQ thiamine ABC tr 100.0 9.9E-35 2.1E-39 314.1 24.1 199 167-408 13-212 (213)
420 TIGR03873 F420-0_ABC_ATP propo 100.0 1.1E-34 2.3E-39 322.7 24.9 207 166-412 15-224 (256)
421 cd03262 ABC_HisP_GlnQ_permease 100.0 5.7E-35 1.2E-39 316.1 22.0 194 166-403 14-213 (213)
422 PRK13642 cbiO cobalt transport 100.0 1.8E-34 4E-39 324.1 26.8 204 166-413 21-228 (277)
423 PRK14254 phosphate ABC transpo 100.0 1.6E-34 3.5E-39 325.4 26.3 213 855-1093 39-264 (285)
424 cd03235 ABC_Metallic_Cations A 100.0 4.8E-35 1E-39 316.6 21.1 200 165-407 12-213 (213)
425 PRK14255 phosphate ABC transpo 100.0 2.1E-34 4.6E-39 319.7 26.8 215 855-1093 5-231 (252)
426 TIGR02770 nickel_nikD nickel i 100.0 7.8E-35 1.7E-39 318.6 23.0 207 167-413 1-214 (230)
427 TIGR02633 xylG D-xylose ABC tr 100.0 9.4E-35 2E-39 353.9 26.0 219 856-1094 2-226 (500)
428 PRK15112 antimicrobial peptide 100.0 1.4E-34 3.1E-39 323.4 25.3 207 165-413 26-238 (267)
429 PRK10247 putative ABC transpor 100.0 7E-35 1.5E-39 317.8 22.2 207 855-1089 7-218 (225)
430 TIGR02142 modC_ABC molybdenum 100.0 8.8E-35 1.9E-39 337.0 24.4 199 170-413 15-220 (354)
431 PRK14245 phosphate ABC transpo 100.0 2E-34 4.4E-39 319.5 26.2 209 166-413 17-233 (250)
432 TIGR01846 type_I_sec_HlyB type 100.0 3.6E-35 7.9E-40 370.7 23.0 257 78-414 421-680 (694)
433 PRK14241 phosphate transporter 100.0 2E-34 4.3E-39 321.0 26.2 211 166-413 18-241 (258)
434 PRK10419 nikE nickel transport 100.0 1.8E-34 4E-39 322.5 25.9 224 856-1094 4-237 (268)
435 PRK10789 putative multidrug tr 100.0 4.4E-35 9.6E-40 361.5 23.0 256 78-414 280-538 (569)
436 PRK11288 araG L-arabinose tran 100.0 9.6E-35 2.1E-39 353.4 25.6 216 855-1092 4-223 (501)
437 PRK14270 phosphate ABC transpo 100.0 2.8E-34 6E-39 318.6 26.9 210 166-413 18-234 (251)
438 TIGR01184 ntrCD nitrate transp 100.0 8.5E-35 1.8E-39 318.1 22.4 202 168-412 1-202 (230)
439 TIGR01846 type_I_sec_HlyB type 100.0 2.2E-33 4.7E-38 354.6 38.5 213 853-1093 453-675 (694)
440 PRK11174 cysteine/glutathione 100.0 3E-35 6.5E-40 365.6 21.1 210 854-1093 348-567 (588)
441 PRK14256 phosphate ABC transpo 100.0 3.2E-34 6.9E-39 318.3 26.9 211 166-413 18-235 (252)
442 cd03252 ABCC_Hemolysin The ABC 100.0 3.3E-35 7.2E-40 323.2 18.9 210 856-1093 1-220 (237)
443 PRK11701 phnK phosphonate C-P 100.0 2.7E-34 5.9E-39 319.9 26.3 206 166-413 20-240 (258)
444 TIGR02203 MsbA_lipidA lipid A 100.0 4.9E-35 1.1E-39 362.9 22.2 257 78-414 297-556 (571)
445 PRK13657 cyclic beta-1,2-gluca 100.0 8.4E-35 1.8E-39 361.2 24.3 207 166-414 349-558 (588)
446 PRK14238 phosphate transporter 100.0 2.1E-34 4.6E-39 322.5 25.1 215 855-1093 24-250 (271)
447 PRK14243 phosphate transporter 100.0 2.1E-34 4.5E-39 321.5 24.9 218 855-1093 10-243 (264)
448 PRK10418 nikD nickel transport 100.0 3.7E-34 7.9E-39 318.0 26.8 202 167-413 18-229 (254)
449 cd03230 ABC_DR_subfamily_A Thi 100.0 1.3E-34 2.7E-39 302.7 21.7 168 857-1084 2-171 (173)
450 PRK14274 phosphate ABC transpo 100.0 3.1E-34 6.7E-39 319.6 26.2 210 166-413 26-242 (259)
451 TIGR01166 cbiO cobalt transpor 100.0 7.6E-35 1.6E-39 309.3 20.3 179 880-1068 4-188 (190)
452 cd03289 ABCC_CFTR2 The CFTR su 100.0 7.4E-35 1.6E-39 324.9 21.1 210 855-1093 2-220 (275)
453 PRK14269 phosphate ABC transpo 100.0 3E-34 6.5E-39 317.3 25.7 208 166-413 16-229 (246)
454 PRK10982 galactose/methyl gala 100.0 1.3E-34 2.7E-39 351.8 24.8 205 881-1094 11-219 (491)
455 TIGR02323 CP_lyasePhnK phospho 100.0 2.3E-34 5E-39 319.7 24.8 215 855-1093 3-233 (253)
456 PLN03130 ABC transporter C fam 100.0 6.8E-35 1.5E-39 390.8 24.5 257 78-414 1199-1461(1622)
457 PRK14262 phosphate ABC transpo 100.0 3.3E-34 7.1E-39 317.9 25.8 210 166-413 17-233 (250)
458 CHL00131 ycf16 sulfate ABC tra 100.0 4E-34 8.7E-39 317.6 26.5 220 855-1093 7-236 (252)
459 TIGR03375 type_I_sec_LssB type 100.0 5.9E-33 1.3E-37 350.9 40.5 212 854-1093 462-683 (694)
460 COG4604 CeuD ABC-type enteroch 100.0 8.2E-36 1.8E-40 298.3 11.2 206 879-1094 12-221 (252)
461 PRK14239 phosphate transporter 100.0 4.3E-34 9.4E-39 317.3 26.3 210 166-413 19-235 (252)
462 PRK13539 cytochrome c biogenes 100.0 1.3E-34 2.9E-39 311.4 21.5 197 856-1082 3-199 (207)
463 PRK14259 phosphate ABC transpo 100.0 3.1E-34 6.7E-39 320.9 25.0 206 166-414 27-253 (269)
464 TIGR01192 chvA glucan exporter 100.0 1.2E-34 2.7E-39 358.1 24.1 257 78-414 299-558 (585)
465 cd03245 ABCC_bacteriocin_expor 100.0 8.8E-35 1.9E-39 316.2 20.0 210 855-1091 2-220 (220)
466 PRK14266 phosphate ABC transpo 100.0 3.7E-34 8E-39 317.4 25.4 219 855-1093 3-229 (250)
467 COG1245 Predicted ATPase, RNas 100.0 1.4E-33 3E-38 312.8 29.7 173 884-1082 357-530 (591)
468 cd03213 ABCG_EPDR ABCG transpo 100.0 3.3E-34 7.1E-39 305.1 23.7 170 165-407 22-194 (194)
469 PRK03695 vitamin B12-transport 100.0 2.4E-34 5.2E-39 318.0 23.5 197 883-1093 11-217 (248)
470 PRK14240 phosphate transporter 100.0 5.8E-34 1.3E-38 315.9 26.2 210 166-413 17-233 (250)
471 PRK14248 phosphate ABC transpo 100.0 9.4E-34 2E-38 317.2 28.0 207 166-413 35-251 (268)
472 TIGR01189 ccmA heme ABC export 100.0 2E-34 4.3E-39 308.1 21.4 194 857-1080 2-197 (198)
473 cd03229 ABC_Class3 This class 100.0 1.6E-34 3.5E-39 303.3 20.3 171 856-1084 1-177 (178)
474 PRK14252 phosphate ABC transpo 100.0 8.7E-34 1.9E-38 317.0 27.3 218 852-1093 13-244 (265)
475 PRK13547 hmuV hemin importer A 100.0 4.7E-34 1E-38 319.0 25.1 212 166-413 15-243 (272)
476 PRK14246 phosphate ABC transpo 100.0 5.7E-34 1.2E-38 316.5 25.6 216 855-1093 10-236 (257)
477 cd03251 ABCC_MsbA MsbA is an e 100.0 7.6E-35 1.6E-39 319.8 18.3 210 856-1093 1-220 (234)
478 PLN03232 ABC transporter C fam 100.0 9.5E-35 2.1E-39 389.7 23.1 257 78-414 1196-1458(1495)
479 PRK09580 sufC cysteine desulfu 100.0 5.8E-34 1.3E-38 315.6 25.4 219 856-1093 2-230 (248)
480 PRK14272 phosphate ABC transpo 100.0 8.2E-34 1.8E-38 315.1 26.6 207 166-413 18-235 (252)
481 TIGR02324 CP_lyasePhnL phospho 100.0 4.1E-34 8.9E-39 311.8 23.6 210 856-1082 2-223 (224)
482 cd03252 ABCC_Hemolysin The ABC 100.0 2.7E-34 5.7E-39 316.1 22.2 205 166-414 16-225 (237)
483 COG1129 MglA ABC-type sugar tr 100.0 3.9E-34 8.5E-39 331.7 24.6 228 855-1104 8-242 (500)
484 PRK14236 phosphate transporter 100.0 9.7E-34 2.1E-38 317.6 27.0 210 166-413 39-255 (272)
485 PRK14271 phosphate ABC transpo 100.0 9.9E-34 2.1E-38 317.7 26.9 210 166-413 35-250 (276)
486 PRK14251 phosphate ABC transpo 100.0 8.3E-34 1.8E-38 314.8 25.9 210 166-413 18-234 (251)
487 cd03254 ABCC_Glucan_exporter_l 100.0 1E-34 2.2E-39 317.7 18.1 211 855-1093 2-221 (229)
488 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.1E-34 2.3E-39 319.4 18.4 210 857-1093 2-221 (238)
489 COG1132 MdlB ABC-type multidru 100.0 7E-35 1.5E-39 360.3 18.9 213 852-1093 325-547 (567)
490 PRK10790 putative multidrug tr 100.0 2.2E-34 4.8E-39 357.9 23.3 211 853-1093 338-558 (592)
491 PRK14275 phosphate ABC transpo 100.0 1.1E-33 2.5E-38 318.8 26.9 203 166-413 53-269 (286)
492 PRK14253 phosphate ABC transpo 100.0 7.6E-34 1.6E-38 314.8 25.1 209 166-412 17-231 (249)
493 PRK14244 phosphate ABC transpo 100.0 9.5E-34 2.1E-38 314.3 25.7 211 166-413 19-236 (251)
494 PRK14258 phosphate ABC transpo 100.0 1.2E-33 2.6E-38 315.0 26.6 212 166-413 21-244 (261)
495 cd03289 ABCC_CFTR2 The CFTR su 100.0 4E-34 8.7E-39 319.0 22.5 198 166-414 18-225 (275)
496 PRK14261 phosphate ABC transpo 100.0 1.2E-33 2.5E-38 313.9 26.1 210 166-413 20-236 (253)
497 PRK09544 znuC high-affinity zi 100.0 5.6E-34 1.2E-38 315.1 23.2 198 855-1093 4-204 (251)
498 TIGR02204 MsbA_rel ABC transpo 100.0 1.9E-34 4.2E-39 357.8 21.9 259 78-414 301-563 (576)
499 PRK14264 phosphate ABC transpo 100.0 1.2E-33 2.6E-38 321.3 26.5 221 855-1093 45-284 (305)
500 TIGR02323 CP_lyasePhnK phospho 100.0 1.3E-33 2.8E-38 313.6 26.0 206 166-413 17-237 (253)
No 1
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.5e-199 Score=1808.03 Aligned_cols=1045 Identities=54% Similarity=0.921 Sum_probs=970.7
Q ss_pred cchhHhhhHHHHhhCCChhhhhhcccccCCCCcccccccccchHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCC
Q 001108 36 EDDEEALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLP 115 (1156)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (1156)
+||||+|+|||+|||||++| +++.+... .++|+.+++..++..+.++..+..++|+++++.+++++++++ ++|
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~p 84 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFE--SEVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--ELP 84 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhcc--CcccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cCC
Confidence 44999999999999999999 66543211 179999999999999999999999999999999999999998 789
Q ss_pred cceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHH
Q 001108 116 KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLL 195 (1156)
Q Consensus 116 ~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL 195 (1156)
.++++++++.+++++..| ||+.|...+.++.++...+.. ++.+..||+|+||.++||+|++++|||||||||||
T Consensus 85 ~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttll 158 (1391)
T KOG0065|consen 85 TIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLL 158 (1391)
T ss_pred ceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHHH
Confidence 999999999999998766 999999999999988776654 55667899999999999999999999999999999
Q ss_pred HHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCC
Q 001108 196 LALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275 (1156)
Q Consensus 196 ~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1156)
++|+|.++...+.+|+|+|||++.+++.+++.++|++|+|.|+|+|||||||.|+++|++++.|++ +..|++++.
T Consensus 159 kal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~-- 233 (1391)
T KOG0065|consen 159 KALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA-- 233 (1391)
T ss_pred HHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH--
Confidence 999999998777789999999999999999999999999999999999999999999999998876 455555431
Q ss_pred CCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCC
Q 001108 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 355 (1156)
Q Consensus 276 ~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD 355 (1156)
.++|++++++||++|+||+|||+++||+||||||||+||+++++++++++|||+|+|||
T Consensus 234 ---------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLD 292 (1391)
T KOG0065|consen 234 ---------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLD 292 (1391)
T ss_pred ---------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccccccc
Confidence 36899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHh
Q 001108 356 SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE 435 (1156)
Q Consensus 356 ~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~ 435 (1156)
++|+.+++++||+++|..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||.||+++++|||+++
T Consensus 293 SsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~ 372 (1391)
T KOG0065|consen 293 SSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTE 372 (1391)
T ss_pred HHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCCCCcccccccccCccccCcHHHHHHHHHHHHHHH
Q 001108 436 VTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLL 515 (1156)
Q Consensus 436 v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~ 515 (1156)
+++++++.++|..+..|+.+.++.++.+.|.+++.+.++..+++.++++.+.++.++..++|.+++|+|+++|+.|++.+
T Consensus 373 vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l 452 (1391)
T KOG0065|consen 373 VTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLL 452 (1391)
T ss_pred hhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHHHHHHHHHHHhHHHHHHHHhhhchhhhhhhccccc
Q 001108 516 MKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFF 595 (1156)
Q Consensus 516 ~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y 595 (1156)
++||.+++++++++.+++++++|++|+++.+ .+..+...+.|++||++++.+|+++++++++++++|||+|||+..||
T Consensus 453 ~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY 530 (1391)
T KOG0065|consen 453 MKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFY 530 (1391)
T ss_pred HhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhccccc
Confidence 9999999999999999999999999999885 55677888999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 001108 596 PPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFAL 675 (1156)
Q Consensus 596 ~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~ 675 (1156)
++|+|.++.+++++|+.++++++|.+|+||++||.+++++||++|+++++++++++++|++++++++++.+|+++|++.+
T Consensus 531 ~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~ 610 (1391)
T KOG0065|consen 531 PPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILL 610 (1391)
T ss_pred ChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCcccccc------------CC---CccccHHHHHhhc
Q 001108 676 LVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFT------------QD---SSETLGVQVLKSR 740 (1156)
Q Consensus 676 l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~------------~~---~~~~~g~~~L~~~ 740 (1156)
+++.+++||+++..+||+||+|++|++|++|++++++.|||++.+|.|.. .. ...+.|..+++.+
T Consensus 611 L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~ 690 (1391)
T KOG0065|consen 611 LVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGR 690 (1391)
T ss_pred HHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecc
Confidence 99999999999999999999999999999999999999999999999971 11 2356788899888
Q ss_pred CCc-----cccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcccccccCCCCCCCCC
Q 001108 741 GFF-----AHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTR 815 (1156)
Q Consensus 741 ~~~-----~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1156)
++. ...+|+|+++|+++||+++|++++.+++.|+++..+.++++..+..+........+
T Consensus 691 ~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~---------------- 754 (1391)
T KOG0065|consen 691 DYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAG---------------- 754 (1391)
T ss_pred cccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhcc----------------
Confidence 877 78899999999999999999999999999999998888776554433221100000
Q ss_pred CCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCe
Q 001108 816 SGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGV 895 (1156)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge 895 (1156)
..... .. ..+....++++++.|+.|..++++||.|.+++|.+++.+| +++++|+|||+.++||.
T Consensus 755 ~~~~~-----------~~--~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~ 818 (1391)
T KOG0065|consen 755 SSSEI-----------EK--LDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGV 818 (1391)
T ss_pred ccccc-----------cc--cccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCc
Confidence 00000 00 0001111356788999999999999999999999988887 67889999999999999
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 975 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~ 975 (1156)
++||||+||||||||||+|+||+++|.++|+|.|||+|+++..|+|.+|||+|+|.|.+.+||+|.|.|+|+||++.+++
T Consensus 819 LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~ 898 (1391)
T KOG0065|consen 819 LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVS 898 (1391)
T ss_pred eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001108 976 SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTV 1054 (1156)
Q Consensus 976 ~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p-~illLDEPTsgLD~~~~~~i~~~l~~~~ 1054 (1156)
.+++.++|+++++.+||++++|.+||.|| +|||++|||||+||++|++|| .||||||||||||++++..|++++|+++
T Consensus 899 ~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla 977 (1391)
T KOG0065|consen 899 DEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLA 977 (1391)
T ss_pred HHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999 8999999999999999999999999999
Q ss_pred hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCCcchhHHHHHHhCCCcccCCCCCCCccEEEEEeeccchhh
Q 001108 1055 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELA 1134 (1156)
Q Consensus 1055 ~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~~~~~~~~~~f~~~~g~~~~~~~~np~~~~l~~~~~~~~~~ 1134 (1156)
++|+|||||+||||.++|+.||++++|++||++||+||+|++++++++||++++|++ |++..||||||||+++.+.+.+
T Consensus 978 ~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~ 1056 (1391)
T KOG0065|consen 978 DTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEAS 1056 (1391)
T ss_pred hcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccc
Confidence 999999999999999999999999999999999999999999999999999999986 5555699999999999999999
Q ss_pred cCCChHHHhccCHhHHHHhhc
Q 001108 1135 LGIDFTEHYKRSDLYRYKQST 1155 (1156)
Q Consensus 1135 ~~~d~~~~~~~s~~~~~~~~~ 1155 (1156)
.+.||+++|++|++|++|+++
T Consensus 1057 ~~~D~a~~w~~S~e~k~~~e~ 1077 (1391)
T KOG0065|consen 1057 LSVDFAEIWKNSEEYKRNKEL 1077 (1391)
T ss_pred cCccHHHHHhccHHHHHHHHH
Confidence 999999999999999999874
No 2
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.9e-183 Score=1785.92 Aligned_cols=1132 Identities=62% Similarity=1.029 Sum_probs=986.1
Q ss_pred cccccCCCCccccC---C----CCcchhHhhhHHHHhhCCChhhhhhcccccC-----CCC---cccccccccchHhhHH
Q 001108 19 SRWNTNSIGAFSRS---S----REEDDEEALKWAALEKLPTYNRLRKGILTTS-----RGE---ANEVDVYNLGLQERQR 83 (1156)
Q Consensus 19 ~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~ 83 (1156)
++|.. +++|++. . ..|||||+|+|||+||||||+|+|++++.+. .|+ ..|+|+++|+.++++.
T Consensus 19 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1470)
T PLN03140 19 SSRNM--EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQK 96 (1470)
T ss_pred hhhhh--hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHH
Confidence 34643 6888542 1 2578999999999999999999999999652 122 2369999999999999
Q ss_pred HHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcc
Q 001108 84 LIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKR 163 (1156)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 163 (1156)
+++|++++.++|+++|++++++|.+++|+++|+++|+|+||+|++++.++++.+||++|.+.+.++.+.+.++...+++.
T Consensus 97 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~ 176 (1470)
T PLN03140 97 FIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKT 176 (1470)
T ss_pred HHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988776554444556
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCH
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1156)
+++||+||||.++||++++|+|||||||||||++|+|+++|+.+++|+|+|||+++++..+++.++||+|+|.|++++||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 78899999999999999999999999999999999999998777899999999998877667889999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+|||.|+++|++.+.++++..+..+++++.++.|+.+++.+|++.+.++.+.+..++++|+.+||++|+||.||++++++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 99999999998776665555566667777777888888999999988888888899999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||.++++++||+|++|++|++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 99999999999999999999999999999999999999999999998766789999999999999999999999999999
Q ss_pred EEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCCC
Q 001108 404 VYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFD 483 (1156)
Q Consensus 404 v~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 483 (1156)
+|+||++++.+||+++||+||+++++|||+++++++++++++|.....|+++.++++++++|++++.++.+.+++..+.+
T Consensus 417 vy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 496 (1470)
T PLN03140 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFD 496 (1470)
T ss_pred EEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999988888887777787888999999999999998888888777766
Q ss_pred CcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHHHH
Q 001108 484 KSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFF 563 (1156)
Q Consensus 484 ~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lff 563 (1156)
+++.++.....++|..++++|+++|++|++++++||++++++|+++.+++|+++|++||+++++.....++..+.|++||
T Consensus 497 ~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff 576 (1470)
T PLN03140 497 KSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLF 576 (1470)
T ss_pred hhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHH
Confidence 66556666666789999999999999999999999999999999999999999999999987765555567788999999
Q ss_pred HHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHHHH
Q 001108 564 AITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALL 643 (1156)
Q Consensus 564 ~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~ 643 (1156)
++++.+++++++++.++.++|+|+|||+.+||++|+|++++++.++|+.++++++|++|+|||+||++++++||.|++++
T Consensus 577 ~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~ 656 (1470)
T PLN03140 577 SMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLV 656 (1470)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCcccc
Q 001108 644 LGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKK 723 (1156)
Q Consensus 644 ~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~ 723 (1156)
++++++++++|++++++++++.+|+.+++++++++++|+||++++++||+||+|++|+||++|+++++++|||.+..|.+
T Consensus 657 ~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~ 736 (1470)
T PLN03140 657 FLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMN 736 (1470)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988864
Q ss_pred c-cCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCccc
Q 001108 724 F-TQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQ 802 (1156)
Q Consensus 724 ~-~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1156)
. +.....+.|.++|+.+|+...+.|+|++++++++|+++|+++++++++|.++.....+++..+...............
T Consensus 737 ~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1470)
T PLN03140 737 KMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRS 816 (1470)
T ss_pred cccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccccc
Confidence 3 223356789999999999998999999999999999999999999999998766655544222111000000000000
Q ss_pred ccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccCceE
Q 001108 803 LSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLV 882 (1156)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~ 882 (1156)
................+.. ....... .............++++.+|+.|..++|+||+|.++.|..++..+...+++.
T Consensus 817 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~ 894 (1470)
T PLN03140 817 LSSADGNNTREVAIQRMSN-PEGLSKN-RDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQ 894 (1470)
T ss_pred ccccccccccccccccccc-ccccccc-cccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCce
Confidence 0000000000000000000 0000000 0000000001223456778999999999999999998876654454455678
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 962 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l 962 (1156)
+|+|||++++||+++||||||||||||||++|+|+.++|..+|+|.++|.+..+..+++.+|||+|+|.+++.+||+|+|
T Consensus 895 iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L 974 (1470)
T PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESL 974 (1470)
T ss_pred EeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHH
Confidence 99999999999999999999999999999999999877778999999999876555677899999999999999999999
Q ss_pred HHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 001108 963 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042 (1156)
Q Consensus 963 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~ 1042 (1156)
.|++.+|.+...+.+++++.++++++.++|.+++++.+|.+++++|||||||||+||++|+.+|+||||||||+|||+.+
T Consensus 975 ~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~ 1054 (1470)
T PLN03140 975 IYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1054 (1470)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 99998887655666667788999999999999999999988888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCCcchhHHHHHHhCCCcccCCCCCCCccE
Q 001108 1043 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATW 1122 (1156)
Q Consensus 1043 ~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~~~~~~~~~~f~~~~g~~~~~~~~np~~~ 1122 (1156)
+..+++.|++++++|+|||||+|||+.++++.||++++|++||+++|.|+.+++++++++||++++|+++||+++|||||
T Consensus 1055 a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~ 1134 (1470)
T PLN03140 1055 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATW 1134 (1470)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhh
Confidence 99999999999988999999999999778999999999998899999999999999999999999898889999999999
Q ss_pred EEEEeeccchhhcCCChHHHhccCHhHHHHhh
Q 001108 1123 MLEVSAASQELALGIDFTEHYKRSDLYRYKQS 1154 (1156)
Q Consensus 1123 ~l~~~~~~~~~~~~~d~~~~~~~s~~~~~~~~ 1154 (1156)
+||+++.+.+...+.||++.|++|++++++++
T Consensus 1135 ~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~ 1166 (1470)
T PLN03140 1135 MLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKA 1166 (1470)
T ss_pred hhhhhcccccccccchHHHHHhccHHHHHHHH
Confidence 99999877666677899999999999988764
No 3
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=6.8e-143 Score=1414.14 Aligned_cols=997 Identities=33% Similarity=0.541 Sum_probs=806.2
Q ss_pred cchHHHHHHHHHHHhhcCCCCC--cceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeece
Q 001108 94 VDNERFLLKLKNRIDRVGIDLP--KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDV 171 (1156)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 171 (1156)
.|++++++.++++.++.+...| +++|+|+||+|++ ...+....||+.|.+.+.+..+...+. ..+++.+++||+||
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCC
Confidence 4566777665555555555555 9999999999999 444566789999998887765443331 12344567899999
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCHHHHHH
Q 001108 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTVRETLA 248 (1156)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1156)
|+.++|||+++|+||||||||||||+|+|+.++.. ..+|+|.+||.++++.. .++.++||+|+|.|++.+||+|||.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 99999999999999999999999999999974211 24999999999875432 2456999999999999999999999
Q ss_pred HHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 001108 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1156)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1156)
|+++++.+..+.... .+.+ ..+..++.+++.+||++++||.||++.+++|||||
T Consensus 161 f~~~~~~~~~~~~~~---~~~~-----------------------~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 214 (1394)
T TIGR00956 161 FAARCKTPQNRPDGV---SREE-----------------------YAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGE 214 (1394)
T ss_pred HHHHhCCCCCCCCCC---CHHH-----------------------HHHHHHHHHHHHcCcccccCceeCCCcCCCCCccc
Confidence 998876422110000 0000 01123567899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcC
Q 001108 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1156)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~ 408 (1156)
||||+||++|+.+|+|+||||||+|||+.++.++++.|+++++..+.|+|+++|||+++++++||+|++|++|+++|+|+
T Consensus 215 rkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred chHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 99999999999999999999999999999999999999999875578999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCCCCc---
Q 001108 409 RELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKS--- 485 (1156)
Q Consensus 409 ~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 485 (1156)
++++.+||+++||.||++.++|||+.+++++.+. +++...+. ....+.++++++|+++..++++.++++.+.++.
T Consensus 295 ~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~e~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 372 (1394)
T TIGR00956 295 ADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGYEK-KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372 (1394)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccccc-cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999987542 22211111 123568899999999887776665544321110
Q ss_pred ------------ccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCccccc
Q 001108 486 ------------KSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTD 553 (1156)
Q Consensus 486 ------------~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~ 553 (1156)
...+.......|..++++|++.|++|.++.++||+..++.++++.+++|+++|++|++.+.+. .+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~---~~ 449 (1394)
T TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT---SD 449 (1394)
T ss_pred hhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---hh
Confidence 000111233468899999999999999999999999999999999999999999999765432 35
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCch
Q 001108 554 GGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNA 633 (1156)
Q Consensus 554 ~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~ 633 (1156)
.+.+.|++||++++.++.++.+++.++.+|++|+|||..++|++++|++|+.+.++|+.++.+++|++|+|||+||.+++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHH
Q 001108 634 GRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVA 713 (1156)
Q Consensus 634 ~~ff~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 713 (1156)
++||.++++++++..++.+++++++++++++.+|+.+++++++++++|+||+++.++||+||+|++|+||++|++++++.
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcccccc--C----------------------CCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHH
Q 001108 714 NEFLGHSWKKFT--Q----------------------DSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTL 769 (1156)
Q Consensus 714 nef~~~~~~~~~--~----------------------~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l 769 (1156)
|||.+..+.|.. | +...+.|.++|+. ++.....|.|.+++++++|+++|.+++++
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l 688 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYIL 688 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 999998887741 1 1124578899985 34445678999999999999999999999
Q ss_pred HHHhcCCCCCCcceeeccccccccccccCCcccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCcc
Q 001108 770 ALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVL 849 (1156)
Q Consensus 770 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (1156)
++.|.++......++............... ..........+..... ......+... .......
T Consensus 689 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~e~~~~~~-----~~~~~~~~~~-~~~~~~~ 751 (1394)
T TIGR00956 689 LTEFNKGAKQKGEILVFRRGSLKRAKKAGE-----------TSASNKNDIEAGEVLG-----STDLTDESDD-VNDEKDM 751 (1394)
T ss_pred HHHhccccCCCCceEeeccccccchhhccc-----------ccccccccccccccCC-----CCcccccccc-ccccccc
Confidence 999988644433222211100000000000 0000000000000000 0000000000 0000001
Q ss_pred CC--CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC-eEEEE
Q 001108 850 PF--EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGN 926 (1156)
Q Consensus 850 ~~--~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~ 926 (1156)
|. ....++|+|++|.++.++ +++.+|+|||++++|||++||||||||||||||++|+|+.++| +.+|+
T Consensus 752 ~~~~~~~~l~~~nl~~~~~~~~---------~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~ 822 (1394)
T TIGR00956 752 EKESGEDIFHWRNLTYEVKIKK---------EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGD 822 (1394)
T ss_pred cccCCCceEEEEeeEEEecCCC---------CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeE
Confidence 11 123579999999885321 3467999999999999999999999999999999999987644 45699
Q ss_pred EEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 927 ITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 927 i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
|.+||.+... .+++.+|||+|+|.+++.+||+|+|.|++.++.+...+.+++++.++++++.++|.+++|+.+|.++.
T Consensus 823 I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~- 900 (1394)
T TIGR00956 823 RLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE- 900 (1394)
T ss_pred EEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-
Confidence 9999998753 46678999999999999999999999999888765556667778899999999999999999987643
Q ss_pred CCCHHHHHHHHHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1007 GLSTEQRKRLTIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~-illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
+|||||||||+||+||+.+|+ ||||||||||||+.++..|+++|++++++|+|||+|+|||+..+++.||++++|++||
T Consensus 901 ~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG 980 (1394)
T TIGR00956 901 GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGG 980 (1394)
T ss_pred CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCC
Confidence 899999999999999999997 9999999999999999999999999988899999999999976788999999999988
Q ss_pred EEEEecCCCCcchhHHHHHHhCCCcccCCCCCCCccEEEEEeeccchhhcCCChHHHhccCHhHHHHh
Q 001108 1086 QEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRYKQ 1153 (1156)
Q Consensus 1086 ~~~~~g~~~~~~~~~~~~f~~~~g~~~~~~~~np~~~~l~~~~~~~~~~~~~d~~~~~~~s~~~~~~~ 1153 (1156)
+++|.|+.+.+++++++||+.+ |.++||+++|||||+||+++.+.+.....||++.|++|+++++++
T Consensus 981 ~iv~~G~~~~~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~ 1047 (1394)
T TIGR00956 981 QTVYFGDLGENSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVK 1047 (1394)
T ss_pred EEEEECCcccccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHH
Confidence 9999999998889999999985 666799999999999999886554444579999999999987754
No 4
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.3e-84 Score=791.40 Aligned_cols=585 Identities=30% Similarity=0.498 Sum_probs=493.3
Q ss_pred CCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHH
Q 001108 114 LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTT 193 (1156)
Q Consensus 114 ~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 193 (1156)
...++++|+|+++++... .+ ..+++|+||||+++|||++|||||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----------------------------~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK----------------------------SK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC----------------------------CC-ccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 357889999999997542 11 4567999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhc
Q 001108 194 LLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273 (1156)
Q Consensus 194 LL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1156)
||++|+|+......++|+|++||++.+....++.+|||.|+|.+++++||+|||.|+++++-+.. .
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~------- 137 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------L------- 137 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------C-------
Confidence 99999999987667899999999887776778899999999999999999999999999875432 0
Q ss_pred CCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCC
Q 001108 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353 (1156)
Q Consensus 274 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsg 353 (1156)
..++.+.+++.+++.|||.+|+||+||+...|||||||||||+||..|+.+|+||||||||||
T Consensus 138 -----------------~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 138 -----------------SKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred -----------------CHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 112345689999999999999999999988899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHH
Q 001108 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (1156)
Q Consensus 354 LD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 433 (1156)
||+.++.++++.|+++|+. ++|+|++||||+.+++++||++++|++|+++|+|+++++.+||+++||+||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999986 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCCCCcccccccccCccccCcHHHHHHHHHHHHH
Q 001108 434 QEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISREL 513 (1156)
Q Consensus 434 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~ 513 (1156)
.++.+..++.+..... .........++......+............ .........++|.|+..+++|.+
T Consensus 280 l~l~s~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~q~~~L~~R~~ 348 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEA------VRIAKLINKFSQTDNLKKTLEALEKSLSTS-----KKVEIGTSPSWWTQFKILLKRSL 348 (613)
T ss_pred HHHHccCCCchhHHhH------HHHHHHhhhccccchhhhhHHHHhhhcccc-----cccccccCCcHHHHHHHHHHHHh
Confidence 9987742100000000 000011111110000000000000000000 00011116899999999999999
Q ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHHHHHHHHHHHhHHH-HHHHHhhhchhhhhhhcc
Q 001108 514 LLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFS-EISMTIAKLPVFYKQRDF 592 (1156)
Q Consensus 514 ~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~-~l~~~~~~~~vf~ker~~ 592 (1156)
..++|++.++..|+++.+++++++|++||+.+.... ......|++||.+.+..+..+. .++.+..++++|.||+.+
T Consensus 349 ~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~---~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~ 425 (613)
T KOG0061|consen 349 KNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAK---GIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSS 425 (613)
T ss_pred HHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchH---HHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhc
Confidence 999999999999999999999999999997744333 2336778888888888676655 688999999999999999
Q ss_pred cccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q 001108 593 RFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGS 672 (1156)
Q Consensus 593 ~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~ 672 (1156)
++|+.++|++++.+.++|+.++.+++|++++|||+|++++..+|+.++++.++..+++.+++.++++..++...|.++++
T Consensus 426 ~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~ 505 (613)
T KOG0061|consen 426 GLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGP 505 (613)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCccccccC--CCccccHHHHHhhcCCccccchhH
Q 001108 673 FALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ--DSSETLGVQVLKSRGFFAHEYWYW 750 (1156)
Q Consensus 673 ~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~--~~~~~~g~~~L~~~~~~~~~~~~w 750 (1156)
++++.+++++||+++.++||.||+|+.|+|+++|++++++.|||.+....|... ..+...|.++++..++... ..|
T Consensus 506 ~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~ 583 (613)
T KOG0061|consen 506 VLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDS--SFW 583 (613)
T ss_pred HHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCccc--ccc
Confidence 999999999999999999999999999999999999999999999744444332 3456788999998887654 468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 001108 751 LGLGALFGFVLLLNFAYTLALTFLD 775 (1156)
Q Consensus 751 ~~~~~l~~~~~~f~~~~~l~l~~~~ 775 (1156)
.++.++++++++|++++++++++..
T Consensus 584 ~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 584 LDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999998864
No 5
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=9e-83 Score=787.02 Aligned_cols=609 Identities=21% Similarity=0.325 Sum_probs=471.8
Q ss_pred CCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHH
Q 001108 114 LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTT 193 (1156)
Q Consensus 114 ~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 193 (1156)
.++++++|.|+++.+.......+... +...+..-.. ......+...+.+|+|||++++|||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~-~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKPK-ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccc----cccccccccc-cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 45799999999999754210111100 0111100000 000011223467999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhc
Q 001108 194 LLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273 (1156)
Q Consensus 194 LL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1156)
||++|+|+++|+ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++..... .
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~-------~------ 174 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSL-------T------ 174 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCC-------C------
Confidence 999999998874 3589999999987532 245699999999999999999999998765421100 0
Q ss_pred CCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCC
Q 001108 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353 (1156)
Q Consensus 274 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsg 353 (1156)
.++...+++++++.+||++++||.||+...++|||||||||+||++|+.+|+||||||||+|
T Consensus 175 ------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 175 ------------------KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred ------------------HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 00112356789999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHH
Q 001108 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (1156)
Q Consensus 354 LD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 433 (1156)
||+.++.++++.|+++++ .++|+|+++||+..+++++||+|++|++|+++|+|+++++.+||+++||+||++.|||||+
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 999999999999999876 5789999999988889999999999999999999999999999999999999999999999
Q ss_pred HhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcC---CCCCcc-----cccc-cccCccccCcHHHH
Q 001108 434 QEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT---PFDKSK-----SHRA-ALTTETYGVGKREL 504 (1156)
Q Consensus 434 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~-----~~~~-~l~~~~~~~s~~~~ 504 (1156)
.++++...+.......+.+ ...+.+.+.|++... ....+.... .....+ ..+. ......+..++|.|
T Consensus 316 ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9998754321000000001 112333444432111 111111100 000000 0000 00112245689999
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHHHHHHHHHHH-hHHHHHHHHhhhc
Q 001108 505 LKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNF-NGFSEISMTIAKL 583 (1156)
Q Consensus 505 ~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~-~~~~~l~~~~~~~ 583 (1156)
+..+++|.++. +|+..+...|+++.+++|+++|++||+.+ ..+.+.+.|++||.+++.++ ..++.++.+..++
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888 78888888999999999999999999653 23456778999998877554 5567888888999
Q ss_pred hhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001108 584 PVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRN 663 (1156)
Q Consensus 584 ~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~ia~~~~~ 663 (1156)
++|+|||.+++|++++|++|+++.++|+.++.+++|++|+|||+|+.+++++||.|+++++++.+++++++.++++++++
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCcc-----ccccCCCccccHHHHHh
Q 001108 664 MVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW-----KKFTQDSSETLGVQVLK 738 (1156)
Q Consensus 664 ~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~-----~~~~~~~~~~~g~~~L~ 738 (1156)
+.+|+.+++++++++++|+||+++ +||+||+|++|+||++|++++++.|||.+.+. .|..+......+..++.
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~ 623 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE 623 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch
Confidence 999999999999999999999997 79999999999999999999999999976432 34221100001111222
Q ss_pred hcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001108 739 SRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLD 775 (1156)
Q Consensus 739 ~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~ 775 (1156)
...+. ....|.+++++++++++|+++++++|++.+
T Consensus 624 ~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 624 EDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22222 235788999999999999999999998654
No 6
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=6.3e-83 Score=789.78 Aligned_cols=569 Identities=25% Similarity=0.415 Sum_probs=481.6
Q ss_pred cccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCC
Q 001108 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 162 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1156)
+.++++|+|+|++++|||+++|+|||||||||||++|+|+.++....+|+|.+||.+++....++.+|||+|+|.+++.+
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34567999999999999999999999999999999999998875456899999999876545567899999999999999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc-
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM- 320 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~- 320 (1156)
||+|||.|+++++.+.... .++....++.+++.+||++++||.||+.+
T Consensus 115 TV~e~l~f~~~~~~~~~~~-------------------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVT-------------------------------KKEKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCCC-------------------------------HHHHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 9999999998776322100 01122457889999999999999999864
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
.++|||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++ .++|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 689999999999999999999999999999999999999999999999876 5789999999999999999999999999
Q ss_pred CeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcC
Q 001108 401 GQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT 480 (1156)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (1156)
|+++|+|+++++.+||+++||+||++.||+||+.++.+....... . .....+++.+.|+.+...++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 999999999999999999999999999999999998865322110 0 011234566666665554443333221
Q ss_pred CCCCcc---cccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccch
Q 001108 481 PFDKSK---SHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIF 557 (1156)
Q Consensus 481 ~~~~~~---~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~ 557 (1156)
...... ..........+..+++.|+..+++|.++..+||+..+..++++.+++++++|++|++.+.+. .+.+..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~---~~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ---KGVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHH
Confidence 111000 00001122356789999999999999999999999999999999999999999999765432 345566
Q ss_pred hHHHHHHHHHHHHhHH-HHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHH
Q 001108 558 AGATFFAITMVNFNGF-SEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRF 636 (1156)
Q Consensus 558 ~g~lff~~~~~~~~~~-~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f 636 (1156)
.|++|+.++..+|.+. ..++.+..++++|+|||..++|++++|++++.+.++|+.++.+++|++++|||+|+.+++++|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 8889998888777754 456777789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhh
Q 001108 637 FKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEF 716 (1156)
Q Consensus 637 f~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef 716 (1156)
|.++++++++..++.+++.++++++++..+|+.+++++++++++|+||+++.++||.||+|++|+||++|++++++.|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-ccccCC---CccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001108 717 LGHSW-KKFTQD---SSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFL 774 (1156)
Q Consensus 717 ~~~~~-~~~~~~---~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~ 774 (1156)
.+..+ .|...+ .+...|.++|+.+|+..+ +.|.+++++++++++|+++++++|++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98775 343211 123468999999988654 458999999999999999999999874
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.5e-81 Score=821.03 Aligned_cols=595 Identities=22% Similarity=0.377 Sum_probs=498.8
Q ss_pred CCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCc
Q 001108 111 GIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSG 190 (1156)
Q Consensus 111 ~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsG 190 (1156)
.++...+.+.|+||+|+++...+.+. ...++.++.+|+|||+.++||++++|+||||||
T Consensus 860 ~~~~~~~~~~~~~v~y~v~~~~~~~~---------------------~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaG 918 (1470)
T PLN03140 860 VLPFTPLAMSFDDVNYFVDMPAEMKE---------------------QGVTEDRLQLLREVTGAFRPGVLTALMGVSGAG 918 (1470)
T ss_pred ccCCCcceEEEEEEEEEEccCccccc---------------------cccCcCCceEeeCcEEEEECCeEEEEECCCCCC
Confidence 34566778999999999865321100 011223457999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHH
Q 001108 191 KTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270 (1156)
Q Consensus 191 KSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~ 270 (1156)
|||||++|+|+.++. .++|+|.+||++.++...++.+|||+|+|.|++.+||+|||.|++.++.+... .
T Consensus 919 KTTLL~~LaG~~~~g-~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~-------~--- 987 (1470)
T PLN03140 919 KTTLMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEV-------S--- 987 (1470)
T ss_pred HHHHHHHHcCCCCCC-cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCC-------C---
Confidence 999999999997642 45899999998875444457799999999999999999999998765421110 0
Q ss_pred HhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecC
Q 001108 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEI 350 (1156)
Q Consensus 271 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEp 350 (1156)
.++....++++++.+||.+++|+.||+..+++|||||||||+||++|+.+|++||||||
T Consensus 988 ---------------------~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEP 1046 (1470)
T PLN03140 988 ---------------------KEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEP 1046 (1470)
T ss_pred ---------------------HHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 00112357889999999999999999888889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC-CeEEEEcCh----hHHHHHHHhc-CC-CC
Q 001108 351 STGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD-GQIVYQGPR----ELVLEFFASM-GF-RC 423 (1156)
Q Consensus 351 tsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~-G~iv~~G~~----~~~~~~f~~~-G~-~~ 423 (1156)
|||||+.++..+++.|++++. .++|+|+++|||..++++.||++++|++ |+++|+|+. +++.+||+++ |+ +|
T Consensus 1047 TsgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~ 1125 (1470)
T PLN03140 1047 TSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKI 1125 (1470)
T ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCC
Confidence 999999999999999999876 5789999999998889999999999996 899999996 6899999997 66 49
Q ss_pred CCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhc---CCCCCcccccccccCccccCc
Q 001108 424 PKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR---TPFDKSKSHRAALTTETYGVG 500 (1156)
Q Consensus 424 p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~l~~~~~~~s 500 (1156)
|+..|||||+.++++..... ....++.+.|+.++.++...+.+. .+.... +.......|..+
T Consensus 1126 p~~~NPAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s 1190 (1470)
T PLN03140 1126 KEKYNPATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGA---SDLYFATQYSQS 1190 (1470)
T ss_pred CCCCCchhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCc---cccccCccccCC
Confidence 99999999999997643211 112367788888776665544332 221111 111123568899
Q ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHHHHHHHHHHHhHH-HHHHHH
Q 001108 501 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGF-SEISMT 579 (1156)
Q Consensus 501 ~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~-~~l~~~ 579 (1156)
++.|++.|++|.++..+||+.++..|+++.+++|+++|++||+.+.+..+..+.+...|++|+++++..++.. +.++.+
T Consensus 1191 ~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~ 1270 (1470)
T PLN03140 1191 TWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMV 1270 (1470)
T ss_pred HHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998776555456666678999998888777554 445777
Q ss_pred hhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001108 580 IAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAV 659 (1156)
Q Consensus 580 ~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~ia~ 659 (1156)
..+|++|+|||..++|++++|++++++.++|+.++.+++|.+++|||+||.++++.||.++++++++.+++.+++.++++
T Consensus 1271 ~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a 1350 (1470)
T PLN03140 1271 AVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVS 1350 (1470)
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCccccccCCC-ccccHHHH-H
Q 001108 660 TGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDS-SETLGVQV-L 737 (1156)
Q Consensus 660 ~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~-~~~~g~~~-L 737 (1156)
++++..+|..++++++.++++|+||++++++||.||+|+||+||+.|++++++.|||.+....|.+++. ....+.++ +
T Consensus 1351 ~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1430 (1470)
T PLN03140 1351 LTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQ 1430 (1470)
T ss_pred HCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987776655432 12345555 5
Q ss_pred hhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001108 738 KSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDP 776 (1156)
Q Consensus 738 ~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~ 776 (1156)
..+|+. ..|.|.+++++++|+++|.++++++++++++
T Consensus 1431 ~~~g~~--~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1431 DHYGYD--PDFMGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred HhcCcC--cccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 667775 4478899999999999999999999999875
No 8
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.4e-79 Score=751.77 Aligned_cols=833 Identities=22% Similarity=0.275 Sum_probs=460.4
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHH-hhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRI-DRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1156)
...++....+++++++..+. +...- ..--..-...+|+|+||+++|.
T Consensus 314 f~~a~~aa~~I~~~i~~~~~-----i~~~~~~~~~~~~~~g~ief~nV~FsYP--------------------------- 361 (1228)
T KOG0055|consen 314 FAKARAAAYRIFETIDRKPS-----IDPYSKGGRVLSSIKGEIEFRNVCFSYP--------------------------- 361 (1228)
T ss_pred HhccccchHHHHHHhcCCCC-----CCcccccCCcccccccceEEEEEEecCC---------------------------
Confidence 56777888889998887765 22111 1112233578999999999973
Q ss_pred hcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcC
Q 001108 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1156)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q 233 (1156)
++ ++..||+|+|+.|++|+.++|+|||||||||++++|.++++|+ +|+|++||.++.++.. +.++|.|+|
T Consensus 362 ---sR-pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~Q 434 (1228)
T KOG0055|consen 362 ---SR-PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQ 434 (1228)
T ss_pred ---CC-CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeee
Confidence 23 2466999999999999999999999999999999999999999 9999999999987765 478999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 001108 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1156)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1156)
+|.+| ..||+|||.|+. ++...+...++++...+ .--+..|++.+|
T Consensus 435 ePvlF-~~tI~eNI~~G~----~dat~~~i~~a~k~ana-----------------------------~~fi~~lp~g~~ 480 (1228)
T KOG0055|consen 435 EPVLF-ATTIRENIRYGK----PDATREEIEEAAKAANA-----------------------------HDFILKLPDGYD 480 (1228)
T ss_pred chhhh-cccHHHHHhcCC----CcccHHHHHHHHHHccH-----------------------------HHHHHhhHHhhc
Confidence 99655 679999999975 22233333444433211 112456899999
Q ss_pred ccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 001108 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1156)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1156)
|.||++++. |||||||||+|||||+.+|+|||||||||+||+.+...+.+.|++.. .++|+|+.. | +..+.+.+|
T Consensus 481 T~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVa-H-RLStIrnaD 555 (1228)
T KOG0055|consen 481 TLVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVA-H-RLSTIRNAD 555 (1228)
T ss_pred ccccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEe-e-ehhhhhccC
Confidence 999998885 99999999999999999999999999999999999999999998864 355666643 3 445666699
Q ss_pred eEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHH--HhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhh
Q 001108 394 DIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL--QEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVG 471 (1156)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l--~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1156)
+|++|++|+||+.|+++|++.. .--.++.+ |+.....+. ..+. . +..+....+...
T Consensus 556 ~I~v~~~G~IvE~G~h~ELi~~----------~G~Y~~lv~~Q~~~~~~~~-~~~~---~--------~~~~~~~~s~~~ 613 (1228)
T KOG0055|consen 556 KIAVMEEGKIVEQGTHDELIAL----------GGIYSSLVRLQELEKAAED-EEEE---E--------SLKEERSRSLKS 613 (1228)
T ss_pred EEEEEECCEEEEecCHHHHHhc----------cchHHHHHHHHhhhhhhhc-cccc---c--------chhhhhhhcccc
Confidence 9999999999999999999862 00112221 111111110 0000 0 000000000000
Q ss_pred hhhHHhhcCCCCC-------cccc--cccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH-------HHH
Q 001108 472 QKISDELRTPFDK-------SKSH--RAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAF-------VAV 535 (1156)
Q Consensus 472 ~~~~~~l~~~~~~-------~~~~--~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~-------~~l 535 (1156)
+............ .+.. ...........+ +.|-+...+.++.+.+...+..++ .++
T Consensus 614 s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s--------~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~ 685 (1228)
T KOG0055|consen 614 SSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEEDEKVS--------FWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAY 685 (1228)
T ss_pred ccccccccCCcccccccccccccccccccccccccccc--------HHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHH
Confidence 0000000000000 0000 000001112223 334444445555554444333333 233
Q ss_pred HHHHHhhccc-CCCcccccccchhHHHHHHHHHHHHh--HHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHH
Q 001108 536 VYMTLFLRTK-MHKDTVTDGGIFAGATFFAITMVNFN--GFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVS 612 (1156)
Q Consensus 536 i~gt~f~~~~-~~~~~~~~~~~~~g~lff~~~~~~~~--~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~ 612 (1156)
+++.++--.. .+.+........+.++|.++....+. .+......+.. -.+..++-.
T Consensus 686 ~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~g--------------------e~Lt~R~R~- 744 (1228)
T KOG0055|consen 686 VFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAG--------------------EKLTKRLRS- 744 (1228)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHH-
Confidence 3332221101 11111111111233333333221111 00000000000 001111111
Q ss_pred HHHHHHHHHHhhhhccccCc---hhHHHHHHHHHH-----HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH----
Q 001108 613 FLEVAVWVFLSYYVVGYDSN---AGRFFKQYALLL-----GVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS---- 680 (1156)
Q Consensus 613 ~~~~~i~~~i~Y~~~g~~~~---~~~ff~~~l~~~-----~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l---- 680 (1156)
..|..+++.=+++-.+ .++....+.... ++..-...+...++++.-.+.+|..++|-+.++.+.
T Consensus 745 ----~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pl 820 (1228)
T KOG0055|consen 745 ----MMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPL 820 (1228)
T ss_pred ----HHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222222222111 133333322111 111112223333344444445555544433333222
Q ss_pred --hhhcccCcCchhHHHHHHHhhcH---HHHHHHHHHHHhhcCCccccccCCCccccHHHHHhhcCC-------ccccch
Q 001108 681 --LGGFILSREDIKKWWKWAYWCSP---LTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGF-------FAHEYW 748 (1156)
Q Consensus 681 --~~Gf~i~~~~ip~~~~W~~~isp---~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~-------~~~~~~ 748 (1156)
++++... +++.-.+. -.|.-.+-+++|-..+-... ........++..+.- ......
T Consensus 821 l~~~~~~~~--------~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV----~al~~e~~~~~~y~~~l~~p~~~~~~~~ 888 (1228)
T KOG0055|consen 821 LILSGYLQK--------KFLKGFSKDDKKAYEEASKIAIEAVSNIRTV----AALCAEEKFMELYKEELEKPRKSSFKRG 888 (1228)
T ss_pred HHHHHHHHH--------HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222110 00000000 00111111122211100000 000001111111100 000112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcccccccCCCCCCCCCCCCCCcccccccc
Q 001108 749 YWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSS 828 (1156)
Q Consensus 749 ~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1156)
.|.+++.-+...+.| +.+.++++|-..+-............. .....+++..........|.-.......
T Consensus 889 ~i~gl~f~~sqs~~~-~~~A~~f~~G~~Li~~g~~~~~~~~~v---------f~~l~~ta~~~~~~~s~~Pd~~ka~~Aa 958 (1228)
T KOG0055|consen 889 LISGLGFGFSQSLLF-FVYALSFWYGARLISNGEMTFEDVFRV---------FMALSFTAMALGQASSYAPDISKAKIAA 958 (1228)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhHHHHhcCCcCHHHHHHH---------HHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 233333323222222 233444444322111111000000000 0000000000000000111110000000
Q ss_pred cchhhhhhhhc--CCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCc
Q 001108 829 SQSLSLAEAEA--SRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAG 906 (1156)
Q Consensus 829 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaG 906 (1156)
.......+..+ +.....+...|.-.+.++|+||.|.||..| +.++|+|+|++|++|+.+|||||||||
T Consensus 959 ~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGsG 1028 (1228)
T KOG0055|consen 959 GSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGSG 1028 (1228)
T ss_pred HHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCCC
Confidence 00000001010 111122333444567899999999998764 467999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCeEEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHH
Q 001108 907 KTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFI 983 (1156)
Q Consensus 907 KTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v 983 (1156)
|||.+.+|-+... +..|.|.|||.+++. ...|+++|.|.|+|.++. -|++||+.|+ .. +++.+ .+
T Consensus 1029 KSTvI~LLeRfYd--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG--~~---~vs~~----eI 1096 (1228)
T KOG0055|consen 1029 KSTVISLLERFYD--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYG--SE---EVSEE----EI 1096 (1228)
T ss_pred HHHHHHHHHHhcC--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhcc--CC---CCCHH----HH
Confidence 9999999987655 679999999998765 456788999999999975 6999999998 11 13332 24
Q ss_pred HHHHHHcC-------CCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 001108 984 DEVMELVE-------LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056 (1156)
Q Consensus 984 ~~~l~~l~-------l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~ 1056 (1156)
.++++..+ |.+-.|+.+|..|. +||||||||++|||||++||+||+|||.||+||.++.+.|+++|.+.. .
T Consensus 1097 i~Aak~ANaH~FI~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~ 1174 (1228)
T KOG0055|consen 1097 IEAAKLANAHNFISSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-E 1174 (1228)
T ss_pred HHHHHHhhhHHHHhcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-c
Confidence 44544443 44556788887754 799999999999999999999999999999999999999999999874 6
Q ss_pred CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1057 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1057 g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||.|+++|++| ....+|.+.++++ |++++.|.
T Consensus 1175 gRT~IvIAHRLS--TIqnaD~I~Vi~~-G~VvE~Gt 1207 (1228)
T KOG0055|consen 1175 GRTTIVIAHRLS--TIQNADVIAVLKN-GKVVEQGT 1207 (1228)
T ss_pred CCcEEEEecchh--hhhcCCEEEEEEC-CEEEeccc
Confidence 999999999987 4688999999986 79999997
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-78 Score=744.21 Aligned_cols=560 Identities=23% Similarity=0.365 Sum_probs=474.4
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1156)
.++.+|+||+|.++||.+|||||+|||||||||++|||+... +.++|+|++||.+.++...+|.+|||.|+|.|.+++|
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 567799999999999999999999999999999999999865 4789999999999987778899999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|||.|.|+|.++.+.. ++.++..+.+|++++.|+|++++|.+||..+ +
T Consensus 881 VrESL~fSA~LRlp~~-------------------------------v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~ 928 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKE-------------------------------VSDEEKYEYVEEVIELLELKEYADALVGLPG-S 928 (1391)
T ss_pred hHHHHHHHHHHcCCCc-------------------------------CCHHHHHHHHHHHHHHhCchhhhhhhccCCC-C
Confidence 9999999998874321 1122334679999999999999999999988 8
Q ss_pred CCChhHHHHHHHHHHHhcCC-ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc-C
Q 001108 323 GISGGQKKRVTTGEMMVGPA-LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS-D 400 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p-~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~-~ 400 (1156)
|||.+||||++||..|+.+| .||||||||||||+.++..|++.+|+++. .|+|++|+||||+..+++.||++++|. +
T Consensus 929 GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrG 1007 (1391)
T KOG0065|consen 929 GLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRG 1007 (1391)
T ss_pred CCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcC
Confidence 99999999999999999999 99999999999999999999999999997 789999999999999999999999996 6
Q ss_pred CeEEEEcChh----HHHHHHHhcC-CCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhH
Q 001108 401 GQIVYQGPRE----LVLEFFASMG-FRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKIS 475 (1156)
Q Consensus 401 G~iv~~G~~~----~~~~~f~~~G-~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1156)
|++||.||.. .+++||++.| .+||...|||||+.|+++...+.. ...++++.|++|..++++.
T Consensus 1008 GqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~------------~~~D~a~~w~~S~e~k~~~ 1075 (1391)
T KOG0065|consen 1008 GQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS------------LSVDFAEIWKNSEEYKRNK 1075 (1391)
T ss_pred CeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc------------cCccHHHHHhccHHHHHHH
Confidence 8999999974 4677999987 999999999999999987643321 1237889999999888776
Q ss_pred Hhhc---CCCCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccc
Q 001108 476 DELR---TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVT 552 (1156)
Q Consensus 476 ~~l~---~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~ 552 (1156)
+++. .+... ..........|+.|+|.|++.|++|++...||++.+...|++..++.++++|+.||+.+ .+.+
T Consensus 1076 e~v~~l~~~~~~--~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g---~~~q 1150 (1391)
T KOG0065|consen 1076 ELVKELSQPPPG--FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG---HNVQ 1150 (1391)
T ss_pred HHHHHHhcCCcc--CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC---CcHH
Confidence 6543 33332 12223345568999999999999999999999999999999999999999999999877 3456
Q ss_pred cccchhHHHHHHHHHHHHhHHH-HHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccC
Q 001108 553 DGGIFAGATFFAITMVNFNGFS-EISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDS 631 (1156)
Q Consensus 553 ~~~~~~g~lff~~~~~~~~~~~-~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~ 631 (1156)
+.++.+++.|.++++...+.-. ..+..-.++-++||||..++|+..+|+++.+++++|+.++.+.+|.++.||++||..
T Consensus 1151 ~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~ 1230 (1391)
T KOG0065|consen 1151 GLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYW 1230 (1391)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchh
Confidence 7777888888887766554333 445555688999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHH
Q 001108 632 NAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAI 711 (1156)
Q Consensus 632 ~~~~ff~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al 711 (1156)
++.+|+.+++..+.+.+....++.++.+++|+..+|..+.++++.++.+|+||++++..||.||+|+||+||+.|..+++
T Consensus 1231 ~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gl 1310 (1391)
T KOG0065|consen 1231 TASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGL 1310 (1391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccCC-------CccccHHHHHhhcC----CccccchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001108 712 VANEFLGHSWKKFTQD-------SSETLGVQVLKSRG----FFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLD 775 (1156)
Q Consensus 712 ~~nef~~~~~~~~~~~-------~~~~~g~~~L~~~~----~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~ 775 (1156)
+...+.+..-.|...+ ...+.|...-..+| +..+... ....+.++|.+.+.+++.+..+|.+
T Consensus 1311 i~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a--~~~c~~c~y~v~~~~l~~f~~~y~~ 1383 (1391)
T KOG0065|consen 1311 ISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLA--TTACVYCAYTVADAFLAAFNIKYLN 1383 (1391)
T ss_pred HHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcc--eeEEEEeeeehHHHHHHHHHHHHHH
Confidence 9999998766654322 33456655555455 3222111 1112233455556666666666654
No 10
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.7e-75 Score=769.01 Aligned_cols=577 Identities=24% Similarity=0.351 Sum_probs=473.3
Q ss_pred cceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHH
Q 001108 116 KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLL 195 (1156)
Q Consensus 116 ~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL 195 (1156)
...++|+||++.+.. ++.++.+|+|||+.++||++++|+|||||||||||
T Consensus 757 ~~~l~~~nl~~~~~~------------------------------~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL 806 (1394)
T TIGR00956 757 EDIFHWRNLTYEVKI------------------------------KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLL 806 (1394)
T ss_pred CceEEEEeeEEEecC------------------------------CCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHH
Confidence 345899999988632 12235699999999999999999999999999999
Q ss_pred HHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCC
Q 001108 196 LALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275 (1156)
Q Consensus 196 ~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1156)
++|+|+.++....+|+|.+||++++. ..++.+|||+|+|.+++.+||+|||.|+++++.+...
T Consensus 807 ~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~---------------- 869 (1394)
T TIGR00956 807 NVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSV---------------- 869 (1394)
T ss_pred HHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCC----------------
Confidence 99999987321227999999998753 3467899999999999999999999999876532110
Q ss_pred CCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCc-cceeecCCCCC
Q 001108 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL-ALFMDEISTGL 354 (1156)
Q Consensus 276 ~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~-vllLDEptsgL 354 (1156)
..++....++++++.+||.+++|+.||+.+. +|||||||||+||++|+.+|+ |||||||||||
T Consensus 870 ---------------~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgL 933 (1394)
T TIGR00956 870 ---------------SKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGL 933 (1394)
T ss_pred ---------------CHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCC
Confidence 0011223578899999999999999997544 799999999999999999997 99999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC-eEEEEcCh----hHHHHHHHhcCC-CCCCCCC
Q 001108 355 DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG-QIVYQGPR----ELVLEFFASMGF-RCPKRKG 428 (1156)
Q Consensus 355 D~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G-~iv~~G~~----~~~~~~f~~~G~-~~p~~~~ 428 (1156)
|+.++..|++.|+++++ .++|+|+++|||...+++.||+|++|++| +++|+|+. +++.+||+++|+ +||+..|
T Consensus 934 D~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~N 1012 (1394)
T TIGR00956 934 DSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDAN 1012 (1394)
T ss_pred CHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCC
Confidence 99999999999999875 57899999999988888999999999987 99999997 578999999996 9999999
Q ss_pred hHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhc---CCCCCcccccccccCccccCcHHHHH
Q 001108 429 VADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR---TPFDKSKSHRAALTTETYGVGKRELL 505 (1156)
Q Consensus 429 ~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~l~~~~~~~s~~~~~ 505 (1156)
||||+.|+.+...... ...++.+.|+.+...+...+++. .+..............+|..+++.|+
T Consensus 1013 pAd~~ldvi~~~~~~~------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~ 1080 (1394)
T TIGR00956 1013 PAEWMLEVIGAAPGAH------------ANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQF 1080 (1394)
T ss_pred HHHHHHHHhhcccccc------------hhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHH
Confidence 9999999876432110 01234556665554444333221 11110100000112246889999999
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHHHHHHHHHHHhHHHHHHHHhhhchh
Q 001108 506 KANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPV 585 (1156)
Q Consensus 506 ~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~v 585 (1156)
+.+++|.++..+||+.+...|+++.+++|+++|++|++.+.+ ..+.+...|++|+.+++..+.....++.++.++++
T Consensus 1081 ~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~---~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~ 1157 (1394)
T TIGR00956 1081 KLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTS---LQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDL 1157 (1394)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999999999999999999999999999999999999977643 34566778888888776655555566677777776
Q ss_pred -hhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhH-------HHHHHHHHHHHHHHHHHHHHHH
Q 001108 586 -FYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGR-------FFKQYALLLGVNQMASALFRFI 657 (1156)
Q Consensus 586 -f~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~-------ff~~~l~~~~~~~~~~~l~~~i 657 (1156)
|+|||.+++|++++|++++.+.++|+.++.+++|.+++||++|+.+++.. |+.++++++++..++.+++.++
T Consensus 1158 ~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~ 1237 (1394)
T TIGR00956 1158 YEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMV 1237 (1394)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999888765 9999999999999999999999
Q ss_pred HHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCccccccC-----------
Q 001108 658 AVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ----------- 726 (1156)
Q Consensus 658 a~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~----------- 726 (1156)
++++++..+|..++++++.++++|+||+++.++||.||+|++|+||++|++++++.|||.+....|...
T Consensus 1238 ~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~ 1317 (1394)
T TIGR00956 1238 ISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQ 1317 (1394)
T ss_pred HHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999877655320
Q ss_pred --------------------CC---c----cccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001108 727 --------------------DS---S----ETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFL 774 (1156)
Q Consensus 727 --------------------~~---~----~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~ 774 (1156)
+. + ...|.++|+.+++...+ .|.+++++++|++++ ++.++++.|.
T Consensus 1318 tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~--~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1318 TCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSG--RWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred CHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccc--cccchhhhhHHHHHH-HHHHHhhheE
Confidence 00 1 34788899988776544 588999999998877 6666777664
No 11
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=9.6e-73 Score=741.99 Aligned_cols=216 Identities=27% Similarity=0.409 Sum_probs=188.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. +++.+|+||||.|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 5889999888741 12569999999999999999999999999999999999876 5689999999886
Q ss_pred Ch--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001108 935 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 935 ~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 1012 (1156)
.. ...++.+|||||++.+++.+||+|++.+.+.++. .+.++.++.++++++.++|.+++++.+ +.|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 2345679999999999999999999999877763 233444567889999999998888774 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
||||+||+||+.+|+||||||||+|||+.+++.+++.|+++.++|+|||+|||+++ ++...|||+++|.+ |+++..|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999987 57789999999986 78999887
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 2154 ~ 2154 (2272)
T TIGR01257 2154 I 2154 (2272)
T ss_pred H
Confidence 4
No 12
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-72 Score=710.34 Aligned_cols=799 Identities=20% Similarity=0.273 Sum_probs=449.4
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.-++..+++|+.+.+..+... .+...+.+.+.+...+.++|.+++=+.
T Consensus 483 ~vqa~VS~~Ri~~fl~~~e~~-----~~~~~~~~~~~~~~~i~i~~~sfsW~~--------------------------- 530 (1381)
T KOG0054|consen 483 LVQAKVSLKRLKEFLLSEELD-----PDSVERSPDEAGENAIEIKNGSFSWDS--------------------------- 530 (1381)
T ss_pred HHHHHHHHHHHHHHhcCcccC-----ccccccCCCCCCCceEEEeeeeEecCC---------------------------
Confidence 346788888888887666431 111122344455667888888877432
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNH 237 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~ 237 (1156)
....+.|+|||+.|++|+++||+||.|||||+||.+|.|+++.. +|+|.++| .++||+|.+ |
T Consensus 531 ----~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~p-W 592 (1381)
T KOG0054|consen 531 ----ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQP-W 592 (1381)
T ss_pred ----CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEecccc-H
Confidence 11223899999999999999999999999999999999999876 99999998 499999987 5
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
+.+.||||||.|+..+. ..+|+...++|..+++..+.|++| .|.||
T Consensus 593 I~ngTvreNILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD--------------------------------~TeIG 638 (1381)
T KOG0054|consen 593 IQNGTVRENILFGSPYD--EERYDKVIKACALKKDLEILPFGD--------------------------------LTEIG 638 (1381)
T ss_pred hhCCcHHHhhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCC--------------------------------cceec
Confidence 56789999999998664 478999999999988877777666 59999
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHH-HHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~-~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
++++ +||||||||+++|||++++++|++||+|.|++|+++..+|++ +++.+. .++|+|++ +| ..+....+|.|+
T Consensus 639 ErGi-nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L--~~KT~ILV-TH-ql~~L~~ad~Ii 713 (1381)
T KOG0054|consen 639 ERGI-NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVILV-TH-QLQFLPHADQII 713 (1381)
T ss_pred CCcc-CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEEE-eC-chhhhhhCCEEE
Confidence 9988 599999999999999999999999999999999999999995 775542 34566654 44 567889999999
Q ss_pred EEcCCeEEEEcChhHHHH---HHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhh
Q 001108 397 LLSDGQIVYQGPRELVLE---FFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQK 473 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~~---~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1156)
+|++|+|+..|+++|+++ .|+++ ...+. ...+.. .....+.......+. +. +.......
T Consensus 714 vl~~G~I~~~Gty~el~~~~~~~~~l-~~~~~------------~~~~~~---~~~~~~~~~~~~~~~-~~-~~~~~~~~ 775 (1381)
T KOG0054|consen 714 VLKDGKIVESGTYEELLKSGGDFAEL-AHEEE------------SEQEEE---ASEKDLESGESSRES-ES-RSLESLSS 775 (1381)
T ss_pred EecCCeEecccCHHHHHhcchhHHHH-hhccc------------hhhccc---cccccccccccccch-hh-hhhhhhcc
Confidence 999999999999999984 33332 00000 000000 000000000000000 00 00000000
Q ss_pred hHHhhcCCCCCccccccccc---CccccCcHHHHHHHHHHHHHHHhhcchHHHH-HHHHHHHH-HHHHHHHHhhcccCCC
Q 001108 474 ISDELRTPFDKSKSHRAALT---TETYGVGKRELLKANISRELLLMKRNSFVYI-FKLIQIAF-VAVVYMTLFLRTKMHK 548 (1156)
Q Consensus 474 ~~~~l~~~~~~~~~~~~~l~---~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~-~r~~~~~~-~~li~gt~f~~~~~~~ 548 (1156)
..+. . ...+. ...... ....+.-.|... ..+.....-..+.. +-++.... +..+....|+..+.+.
T Consensus 776 ~~~~-~-~~~~~--~~~~~~~~ee~~~G~v~~~vY-----~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~ 846 (1381)
T KOG0054|consen 776 EEEK-S-KDEKE--EEDKLVQEEERETGKVSWSVY-----KKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDD 846 (1381)
T ss_pred cccc-c-ccccc--hhhHHHHHHHHhcCEeeHHHH-----HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0000 0 00000 000000 000000001110 11111100111111 01111111 1122222333222222
Q ss_pred cc--c---ccccch----hHHHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHH
Q 001108 549 DT--V---TDGGIF----AGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVW 619 (1156)
Q Consensus 549 ~~--~---~~~~~~----~g~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~ 619 (1156)
.. . .+...| ....+...++.++.++......+.....++.+ +-+.+++.|+.|+++
T Consensus 847 ~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~------------ml~~Ilrapm~FFdt--- 911 (1381)
T KOG0054|consen 847 GEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDK------------LLNSILRAPMSFFDT--- 911 (1381)
T ss_pred cccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHhCcchhcCC---
Confidence 11 0 111111 11112222222222222222222111111111 334566677777664
Q ss_pred HHHhhhhccccCchhHHHHHHHHHHHH---------HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcc-----
Q 001108 620 VFLSYYVVGYDSNAGRFFKQYALLLGV---------NQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFI----- 685 (1156)
Q Consensus 620 ~~i~Y~~~g~~~~~~~ff~~~l~~~~~---------~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~----- 685 (1156)
.+.||.++.|...... ..+...+..+++.+ .+++...-.+++.++.++..|+
T Consensus 912 -----------TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~---~vi~~~~P~fli~~~pl~v~~~~~~~~ 977 (1381)
T KOG0054|consen 912 -----------TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGIL---VVISYVTPWFLIAIIPLGVIYYFVQRY 977 (1381)
T ss_pred -----------CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5678888877543322 11112222222211 1122211112222112111111
Q ss_pred --cCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCccccccCCCccccHHHHHhhcCCc--------------------
Q 001108 686 --LSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFF-------------------- 743 (1156)
Q Consensus 686 --i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~-------------------- 743 (1156)
....+++..- ...-||+.-.+..- ..|..++++++-.
T Consensus 978 Y~~tsReLkRLe--sitRSPi~sh~~Et-------------------l~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~ 1036 (1381)
T KOG0054|consen 978 YLATSRELKRLE--SITRSPIYSHFSET-------------------LQGLSTIRAFGKEERFIQENDELIDENSRAFFL 1036 (1381)
T ss_pred HHHHhHHHHHhh--hcccchHHHhHHHH-------------------hcCcceeeeccccHHHHHHHHHHhhhhHHHHHH
Confidence 0001111000 00122332221111 1122222222211
Q ss_pred cccchhHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCccccc-----ccCCCCCCCCCC
Q 001108 744 AHEYWYWLGLGA--LFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLS-----TLGGSSNHNTRS 816 (1156)
Q Consensus 744 ~~~~~~w~~~~~--l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 816 (1156)
......|+++-. +..+++++ .+.+++...... ... +.+++. .+++..++..+.
T Consensus 1037 ~~~a~RWla~Rle~ig~~~v~~--~al~~vl~~~~~-~~~-----------------g~vGLslsyal~lt~~l~~~vR~ 1096 (1381)
T KOG0054|consen 1037 SISANRWLAVRLELLGNLVVLI--AALFAVLLPSGL-ISP-----------------GLVGLSLSYALQLTGLLQWLVRQ 1096 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCC-CCc-----------------chHHHHHHHHHHHHHHHHHHHHH
Confidence 001123444322 21211111 111111111100 000 001100 000000000000
Q ss_pred CCCCccccccccc---chhhhhhhhcCCCC--C-CCCccCCCCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEE
Q 001108 817 GSTDDIRGQQSSS---QSLSLAEAEASRPK--K-KGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGA 890 (1156)
Q Consensus 817 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~ 890 (1156)
. .+.+..+.++ .+....+.+..... . ....|| +.+.++|+|++.+|.. +-..+|+||||+
T Consensus 1097 ~--~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP-~~G~I~f~~~~~RYrp-----------~lp~VLk~is~~ 1162 (1381)
T KOG0054|consen 1097 S--SELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWP-SKGEIEFEDLSLRYRP-----------NLPLVLKGISFT 1162 (1381)
T ss_pred H--HHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCC-CCCeEEEEEeEEEeCC-----------CCcchhcCceEE
Confidence 0 0000001111 11111011111111 1 112222 3468999999877752 224699999999
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHH
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAW 967 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~ 967 (1156)
|+|||++||||++|||||||+++|.+... +.+|.|.|||.++.+ ...|++++.+||+|.++. -|+|.||
T Consensus 1163 I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NL----- 1234 (1381)
T KOG0054|consen 1163 IKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNL----- 1234 (1381)
T ss_pred EcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceec-Ccccccc-----
Confidence 99999999999999999999999998776 468999999999765 457788999999998864 3555554
Q ss_pred hhCCCCCChHHHHHHHHHHHHHcCCCcccccccC------CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001108 968 LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1156)
Q Consensus 968 lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~------~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1041 (1156)
|+..+..++.++++||.++|.+...+..+ .+++.++|-||||.+|+||||+++++||+|||+|+++|++
T Consensus 1235 -----DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~ 1309 (1381)
T KOG0054|consen 1235 -----DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPE 1309 (1381)
T ss_pred -----CcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChH
Confidence 66666677889999999999876544332 2356789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1042 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1042 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
+...|+++||+..+ +||||++.|+.+. ...+|||+||++ |+++++|.+
T Consensus 1310 TD~lIQ~tIR~~F~-dcTVltIAHRl~T--Vmd~DrVlVld~-G~v~EfdsP 1357 (1381)
T KOG0054|consen 1310 TDALIQKTIREEFK-DCTVLTIAHRLNT--VMDSDRVLVLDA-GRVVEFDSP 1357 (1381)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEeeccch--hhhcCeEEEeeC-CeEeecCCh
Confidence 99999999999874 7999999999874 456899999997 699999886
No 13
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.3e-69 Score=718.05 Aligned_cols=211 Identities=22% Similarity=0.301 Sum_probs=178.7
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
+.++|+||+++|+. +...+|+||||+|+|||++||+|+||||||||+++|.|... +.+|+|.|||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEe
Confidence 57999999999852 12359999999999999999999999999999999999876 568999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 1003 (1156)
+.+ ...++.++||||++.++.. |++|||.+.. .. .++.++++++.+++.+.. |+.+|..
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~----tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EH----NDADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CC----CHHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 754 4567889999999999864 9999997531 11 234578888888876543 4445443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1372 -G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1372 -GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA 1447 (1622)
T ss_pred -CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999885 5899999999986 4567999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 1448 -G~IvE~Gt~ 1456 (1622)
T PLN03130 1448 -GRVVEFDTP 1456 (1622)
T ss_pred -CEEEEeCCH
Confidence 799999974
No 14
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=7.6e-69 Score=710.16 Aligned_cols=216 Identities=19% Similarity=0.313 Sum_probs=179.3
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC------------
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------ 921 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~------------ 921 (1156)
..++|+||+|+|+.. ++.++|+|+||+|+||+++||+||||||||||+++|.|...+.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 469999999999632 1246999999999999999999999999999999999976531
Q ss_pred ----------------------------------------eEEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCCH
Q 001108 922 ----------------------------------------YITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTI 958 (1156)
Q Consensus 922 ----------------------------------------~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv 958 (1156)
+.+|+|.+||.++.+ ..+++.+|||+|++.++. .|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccH
Confidence 148999999998754 457788999999999874 799
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001108 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031 (1156)
Q Consensus 959 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illL 1031 (1156)
+|||.|+. ++.+ ++.++++++..++.++ .|+.+|.. ...||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~-----~~at----~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK-----EDAT----REDVKRACKFAAIDEFIESLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC-----CCCC----HHHHHHHHHHcCCHHHHHhCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999862 2233 2346777777776543 36667754 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecC---cE-EEEecC
Q 001108 1032 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG---GQ-EIYVGP 1092 (1156)
Q Consensus 1032 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G---g~-~~~~g~ 1092 (1156)
|||||+||+++.+.|++.|+++. .+|+|+|+++|+++ ..+.||++++|++| |+ ++..|+
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gt 1446 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGT 1446 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecC
Confidence 99999999999999999999986 36899999999985 56789999999983 56 557887
No 15
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.7e-68 Score=708.85 Aligned_cols=211 Identities=20% Similarity=0.278 Sum_probs=178.5
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++|+||+++|+. +.+.+|+|||++|+|||++||+|+||||||||+++|.|... +.+|+|.|||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEE
Confidence 46999999999942 12469999999999999999999999999999999999876 568999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 1003 (1156)
+.+ ..+++.++||||++.+++ -|++|||.+.. +.+ ++.++++++..++.+.. |+.+|..
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 754 456788999999999887 49999997531 122 34578888888886543 3444443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+.+||||||||++|||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1369 -G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1369 -GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS 1444 (1495)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999875 5899999999985 4567999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 1445 -G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 -GQVLEYDSP 1453 (1495)
T ss_pred -CEEEEECCH
Confidence 799999984
No 16
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5.3e-68 Score=616.27 Aligned_cols=491 Identities=26% Similarity=0.330 Sum_probs=377.3
Q ss_pred eEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHH
Q 001108 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLA 197 (1156)
Q Consensus 118 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~ 197 (1156)
=++.+||++++... .....+++||||++.+||+++|+|.|||||||+.++
T Consensus 5 lL~V~nL~v~~~~~------------------------------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~ 54 (539)
T COG1123 5 LLEVENLTVEFATD------------------------------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALA 54 (539)
T ss_pred eEEEeceEEEEecC------------------------------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHH
Confidence 47899999998653 122569999999999999999999999999999999
Q ss_pred HhcCCCCC-CCceeEEEEcCccCCCcCc-------cceEEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHH
Q 001108 198 LAGKLDPT-LKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD--NHIGEMTVRETLAFSARCQGVGTRYEMLTELA 267 (1156)
Q Consensus 198 L~G~~~~~-~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~ 267 (1156)
|.|.+++. ...+|+|.++|.++..... .+.++||+|++ .+-|-+||.+.|.-..+.++...
T Consensus 55 i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~--------- 125 (539)
T COG1123 55 LMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS--------- 125 (539)
T ss_pred HhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcccc---------
Confidence 99999986 4568999999997654432 26799999985 46777899888876655543211
Q ss_pred HHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCcccee
Q 001108 268 RREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFM 347 (1156)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllL 347 (1156)
..+...++.++|+..||++.... +++++.|||||||||.||+||+.+|++|++
T Consensus 126 ------------------------~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIa 178 (539)
T COG1123 126 ------------------------RAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIA 178 (539)
T ss_pred ------------------------HHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEE
Confidence 11233456788999999987654 668899999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCC
Q 001108 348 DEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRK 427 (1156)
Q Consensus 348 DEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~ 427 (1156)
||||++||..++.+|++.|+++.+ ..++.++.++|+..-+.++||+|+||.+|++|+.|+.++++.. |.
T Consensus 179 DEPTTaLDvt~q~qIL~llk~l~~-e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~--------p~-- 247 (539)
T COG1123 179 DEPTTALDVTTQAQILDLLKDLQR-ELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN--------PQ-- 247 (539)
T ss_pred CCCccccCHHHHHHHHHHHHHHHH-HcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhc--------cC--
Confidence 999999999999999999999876 4567777899999999999999999999999999999988541 11
Q ss_pred ChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCCCCcccccccccCccccCcHHHHHHH
Q 001108 428 GVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKA 507 (1156)
Q Consensus 428 ~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~ 507 (1156)
.||... +... .|.
T Consensus 248 -----------------------hpYT~~-----------------Ll~a--~p~------------------------- 260 (539)
T COG1123 248 -----------------------HPYTRG-----------------LLAA--VPR------------------------- 260 (539)
T ss_pred -----------------------CcccHH-----------------HHhh--CCC-------------------------
Confidence 011000 0000 000
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHHHHHHHHHHHhHHHHHHHHhhhchhhh
Q 001108 508 NISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFY 587 (1156)
Q Consensus 508 ~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~vf~ 587 (1156)
....
T Consensus 261 --------------------------------------~~~~-------------------------------------- 264 (539)
T COG1123 261 --------------------------------------LGDE-------------------------------------- 264 (539)
T ss_pred --------------------------------------cccc--------------------------------------
Confidence 0000
Q ss_pred hhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Q 001108 588 KQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVA 667 (1156)
Q Consensus 588 ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA 667 (1156)
T Consensus 265 -------------------------------------------------------------------------------- 264 (539)
T COG1123 265 -------------------------------------------------------------------------------- 264 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCccccccCCCccccHHHHHhhcCCccccc
Q 001108 668 NTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEY 747 (1156)
Q Consensus 668 ~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~ 747 (1156)
..
T Consensus 265 ------------------------------------------------------~~------------------------ 266 (539)
T COG1123 265 ------------------------------------------------------KI------------------------ 266 (539)
T ss_pred ------------------------------------------------------cc------------------------
Confidence 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcccccccCCCCCCCCCCCCCCccccccc
Q 001108 748 WYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQS 827 (1156)
Q Consensus 748 ~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1156)
. . .+..
T Consensus 267 -----------------------------------------------~-------------------~--~~~~------ 272 (539)
T COG1123 267 -----------------------------------------------I-------------------R--LPRR------ 272 (539)
T ss_pred -----------------------------------------------c-------------------c--cccc------
Confidence 0 0 0000
Q ss_pred ccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcH
Q 001108 828 SSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 907 (1156)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGK 907 (1156)
. ..+ ...-++++|++..|..++.+. . -..+...+++||||++++||++||+|+|||||
T Consensus 273 ----~---------------~~~-~~~ll~V~~l~k~y~~~~~~~-~-~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGK 330 (539)
T COG1123 273 ----G---------------PLR-AEPLLSVRNLSKRYGSRKGLF-V-RERGEVKAVDDVSFDLREGETLGLVGESGSGK 330 (539)
T ss_pred ----c---------------ccc-cCceeEeeeeeeeeccccccc-c-ccccceeeeeeeeeEecCCCEEEEECCCCCCH
Confidence 0 000 011245566655554432111 0 00134579999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCeEEEEEEEcCccC--C---hhcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHH
Q 001108 908 TTLMDVLAGRKTGGYITGNITISGYPK--K---QETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRK 980 (1156)
Q Consensus 908 TTLl~~L~g~~~~~~~~G~i~i~g~~~--~---~~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~ 980 (1156)
|||.++|+|+.. +..|.|.++|.+. . ....++.+-+++|++ .+.|.+||++.+.-........ ...+++
T Consensus 331 STlar~i~gL~~--P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~~ 406 (539)
T COG1123 331 STLARILAGLLP--PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAERR 406 (539)
T ss_pred HHHHHHHhCCCC--CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHHH
Confidence 999999999987 4689999999762 1 122345667777776 5779999999998765544322 245667
Q ss_pred HHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 001108 981 MFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1058 (1156)
Q Consensus 981 ~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~ 1058 (1156)
+++.++++.++|.+ +.++. +.+||||||||++|||||+.+|++|++|||||.||+..+..|.++|+++.++ |.
T Consensus 407 ~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~ 481 (539)
T COG1123 407 ARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGL 481 (539)
T ss_pred HHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCC
Confidence 78999999999986 45555 3579999999999999999999999999999999999999999999999765 99
Q ss_pred EEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1059 TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1059 tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|.|++|||++. +...|||+.+|.+ |++|..||.
T Consensus 482 t~lfISHDl~v-V~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 482 TYLFISHDLAV-VRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred EEEEEeCCHHH-HHhhCceEEEEEC-CeEEEeCCH
Confidence 99999999975 7789999999986 799999974
No 17
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.4e-65 Score=686.64 Aligned_cols=211 Identities=18% Similarity=0.209 Sum_probs=178.7
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
+.++|+||+++|+.. ...+|+||||+|+|||++||+|+||||||||+++|.|... +.+|+|.|||.+
T Consensus 1283 g~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEE
Confidence 579999999999631 1359999999999999999999999999999999999876 568999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 1003 (1156)
+.+ ..+++.++||||++.+++. |++|||.... +.+ ++.++++++.+++.+.. |+.+|..
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 754 4567889999999999875 9999996321 122 34578889988886543 4445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1419 -G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1419 -GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK 1494 (1522)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999875 5899999999985 4667999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 1495 -G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 -GEVAEFGAP 1503 (1522)
T ss_pred -CEEEEECCH
Confidence 799999985
No 18
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-66 Score=628.83 Aligned_cols=456 Identities=21% Similarity=0.304 Sum_probs=346.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|||+++++|++++|+|||||||||||++|+|.++| + +|+|.++|.++..... ++.++||+|++.+++
T Consensus 19 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (506)
T PRK13549 19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY---EGEIIFEGEELQASNIRDTERAGIAIIHQELALVK 95 (506)
T ss_pred EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHHCCeEEEEeccccCC
Confidence 499999999999999999999999999999999999986 5 8999999998765432 356999999988899
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.|+......+.. . ..+....++++++.+||++..+..++
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~-~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~-- 142 (506)
T PRK13549 96 ELSVLENIFLGNEITPGGIM-D------------------------------YDAMYLRAQKLLAQLKLDINPATPVG-- 142 (506)
T ss_pred CCcHHHHhhhcccccccCCc-C------------------------------HHHHHHHHHHHHHHcCCCCCcccchh--
Confidence 99999999987532110000 0 00011245678999999877776554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++. . +++||.++|+..++.++||+|++|+
T Consensus 143 ---~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvi~~tH~~~~~~~~~d~v~~l~ 217 (506)
T PRK13549 143 ---NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-H-GIACIYISHKLNEVKAISDTICVIR 217 (506)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHHhcCEEEEEE
Confidence 6999999999999999999999999999999999999999999998854 3 4456668889999999999999999
Q ss_pred CCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhc
Q 001108 400 DGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR 479 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (1156)
+|++++.|+.+++.. .+ ..+.
T Consensus 218 ~G~i~~~~~~~~~~~---------------~~-----------------------------~~~~--------------- 238 (506)
T PRK13549 218 DGRHIGTRPAAGMTE---------------DD-----------------------------IITM--------------- 238 (506)
T ss_pred CCEEeeecccccCCH---------------HH-----------------------------HHHH---------------
Confidence 999998886442200 00 0000
Q ss_pred CCCCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhH
Q 001108 480 TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAG 559 (1156)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g 559 (1156)
++ + ..
T Consensus 239 -------------------------------------------------------------~~--~--~~---------- 243 (506)
T PRK13549 239 -------------------------------------------------------------MV--G--RE---------- 243 (506)
T ss_pred -------------------------------------------------------------hh--C--cC----------
Confidence 00 0 00
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHH
Q 001108 560 ATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQ 639 (1156)
Q Consensus 560 ~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~ 639 (1156)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCC
Q 001108 640 YALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGH 719 (1156)
Q Consensus 640 ~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 719 (1156)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCC
Q 001108 720 SWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGG 799 (1156)
Q Consensus 720 ~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1156)
. . . .. + . .
T Consensus 244 ---~-~---~-------------------------------------------~~-~--~-------------------~ 251 (506)
T PRK13549 244 ---L-T---A-------------------------------------------LY-P--R-------------------E 251 (506)
T ss_pred ---c-c---c-------------------------------------------cc-c--c-------------------c
Confidence 0 0 0 00 0 0 0
Q ss_pred cccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccC
Q 001108 800 NVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLED 879 (1156)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~ 879 (1156)
. . . + ....++++|+++.++.. +
T Consensus 252 ---------------------------------------~-~-~------~-~~~~l~~~~l~~~~~~~----------~ 273 (506)
T PRK13549 252 ---------------------------------------P-H-T------I-GEVILEVRNLTAWDPVN----------P 273 (506)
T ss_pred ---------------------------------------c-c-C------C-CCceEEEecCccccccc----------c
Confidence 0 0 0 0 00125566776554210 1
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh----hcccceEEEeccCC---CC
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IH 952 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~---~~ 952 (1156)
++.+|+||||+|++||++||+||||||||||+++|+|...+ +.+|+|.++|.++.. ...++.+||++|++ .+
T Consensus 274 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 352 (506)
T PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGI 352 (506)
T ss_pred ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCC
Confidence 23589999999999999999999999999999999998641 258999999976532 12245689999985 46
Q ss_pred CCCCCHHHHHHHHHHhhCCC--CCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001108 953 SPFVTIYESLLFSAWLRLSP--EVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1029 (1156)
Q Consensus 953 ~~~~Tv~e~l~~~~~lr~~~--~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~il 1029 (1156)
++.+||.||+.+........ ..+.+..++.++++++.+++. +..+..+ ..|||||||||+||+||+.+|+||
T Consensus 353 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~ll 427 (506)
T PRK13549 353 VPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKIL 427 (506)
T ss_pred cCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEE
Confidence 78899999998753211110 012233446688999999996 4666653 469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1030 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1030 lLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
||||||+|||+.++..++++|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+..
T Consensus 428 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 490 (506)
T PRK13549 428 ILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINH 490 (506)
T ss_pred EEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEeccc
Confidence 999999999999999999999999888999999999987 57789999999986 6888888754
No 19
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-66 Score=628.60 Aligned_cols=457 Identities=22% Similarity=0.308 Sum_probs=345.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
++|+|+||++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+
T Consensus 19 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (510)
T PRK09700 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL 95 (510)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCC
Confidence 4999999999999999999999999999999999999998 9999999998765432 24699999998889999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.++...... .+.. ... + ..+....++.+++.+||.+..++.++
T Consensus 96 tv~e~l~~~~~~~~~--~~~~-~~~-------------~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~---- 144 (510)
T PRK09700 96 TVLENLYIGRHLTKK--VCGV-NII-------------D-----------WREMRVRAAMMLLRVGLKVDLDEKVA---- 144 (510)
T ss_pred cHHHHhhhccccccc--cccc-ccc-------------C-----------HHHHHHHHHHHHHHcCCCCCcccchh----
Confidence 999999875421000 0000 000 0 00112346778999999877776654
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++. . +++||.++|+..++.++||+|++|++|
T Consensus 145 -~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsHd~~~~~~~~d~v~~l~~G 221 (510)
T PRK09700 145 -NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-E-GTAIVYISHKLAEIRRICDRYTVMKDG 221 (510)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999999864 3 445666888999999999999999999
Q ss_pred eEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCC
Q 001108 402 QIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481 (1156)
Q Consensus 402 ~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (1156)
++++.|+++++.. .+ ..+.
T Consensus 222 ~i~~~g~~~~~~~---------------~~-----------------------------~~~~----------------- 240 (510)
T PRK09700 222 SSVCSGMVSDVSN---------------DD-----------------------------IVRL----------------- 240 (510)
T ss_pred EEeeecchhhCCH---------------HH-----------------------------HHHH-----------------
Confidence 9999887654210 00 0000
Q ss_pred CCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHH
Q 001108 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561 (1156)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~l 561 (1156)
+. + .. ..
T Consensus 241 -----------------------------------------------------------~~--~--~~-~~--------- 247 (510)
T PRK09700 241 -----------------------------------------------------------MV--G--RE-LQ--------- 247 (510)
T ss_pred -----------------------------------------------------------hc--C--CC-cc---------
Confidence 00 0 00 00
Q ss_pred HHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHH
Q 001108 562 FFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYA 641 (1156)
Q Consensus 562 ff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l 641 (1156)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCcc
Q 001108 642 LLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721 (1156)
Q Consensus 642 ~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~ 721 (1156)
..+
T Consensus 248 ------------------------------------------------------------------------~~~----- 250 (510)
T PRK09700 248 ------------------------------------------------------------------------NRF----- 250 (510)
T ss_pred ------------------------------------------------------------------------ccc-----
Confidence 000
Q ss_pred ccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcc
Q 001108 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (1156)
Q Consensus 722 ~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1156)
. . ..+
T Consensus 251 ~----~----------------------------------------------~~~------------------------- 255 (510)
T PRK09700 251 N----A----------------------------------------------MKE------------------------- 255 (510)
T ss_pred c----c----------------------------------------------ccc-------------------------
Confidence 0 0 000
Q ss_pred cccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccCce
Q 001108 802 QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKL 881 (1156)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 881 (1156)
.. . .. + .+..++++|+++.+.
T Consensus 256 -------------~~----------------------~---~~-----~-~~~~l~~~~l~~~~~--------------- 276 (510)
T PRK09700 256 -------------NV----------------------S---NL-----A-HETVFEVRNVTSRDR--------------- 276 (510)
T ss_pred -------------cc----------------------c---cC-----C-CCcEEEEeCccccCC---------------
Confidence 00 0 00 0 001366677764321
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh----hcccceEEEeccC---CCCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQN---DIHSP 954 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~---~~~~~ 954 (1156)
.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|+ ..+++
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFP 354 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcC
Confidence 27999999999999999999999999999999999875 468999999976532 1234568999998 45778
Q ss_pred CCCHHHHHHHHHHhh---CCC--C-CChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001108 955 FVTIYESLLFSAWLR---LSP--E-VDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1027 (1156)
Q Consensus 955 ~~Tv~e~l~~~~~lr---~~~--~-~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~ 1027 (1156)
.+||+||+.+....+ ... . ......++.++++++.+++. +..++.+ ..|||||||||+|||+|+.+|+
T Consensus 355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~ 429 (510)
T PRK09700 355 NFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPE 429 (510)
T ss_pred CCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCC
Confidence 899999998753211 000 0 11223335678999999996 6666654 4699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1028 illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||||||||+|||+.++..++++|++++++|.|||++|||+. .+.+.||++++|++ |++++.++.
T Consensus 430 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 430 VIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred EEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 99999999999999999999999999878999999999986 47789999999986 688887764
No 20
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=9.7e-66 Score=624.84 Aligned_cols=448 Identities=21% Similarity=0.320 Sum_probs=343.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
++|+|+|+++.+|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK10762 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL 94 (501)
T ss_pred EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCC
Confidence 4999999999999999999999999999999999999998 9999999988754321 35699999998889999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.|+........... ..+....++++++.+||++..|..++
T Consensus 95 tv~e~l~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~---- 140 (501)
T PRK10762 95 TIAENIFLGREFVNRFGRID------------------------------WKKMYAEADKLLARLNLRFSSDKLVG---- 140 (501)
T ss_pred cHHHHhhhccccccccCccC------------------------------HHHHHHHHHHHHHHcCCCCCccCchh----
Confidence 99999998643210000000 00012245678999999887776554
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
.|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++.. . +++||.++|+..++.++||+|++|++|
T Consensus 141 -~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvii~sHd~~~~~~~~d~i~~l~~G 217 (501)
T PRK10762 141 -ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-Q-GRGIVYISHRLKEIFEICDDVTVFRDG 217 (501)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 5999999999999999999999999999999999999999999998754 3 445666888999999999999999999
Q ss_pred eEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCC
Q 001108 402 QIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481 (1156)
Q Consensus 402 ~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (1156)
+++..|+.+++.. .+..+.
T Consensus 218 ~i~~~~~~~~~~~--------------------------------------------~~~~~~----------------- 236 (501)
T PRK10762 218 QFIAEREVADLTE--------------------------------------------DSLIEM----------------- 236 (501)
T ss_pred EEEEecCcCcCCH--------------------------------------------HHHHHH-----------------
Confidence 9998775442100 000000
Q ss_pred CCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHH
Q 001108 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561 (1156)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~l 561 (1156)
++ . ..
T Consensus 237 -----------------------------------------------------------~~--~--~~------------ 241 (501)
T PRK10762 237 -----------------------------------------------------------MV--G--RK------------ 241 (501)
T ss_pred -----------------------------------------------------------hc--C--CC------------
Confidence 00 0 00
Q ss_pred HHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHH
Q 001108 562 FFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYA 641 (1156)
Q Consensus 562 ff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l 641 (1156)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCcc
Q 001108 642 LLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721 (1156)
Q Consensus 642 ~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~ 721 (1156)
.
T Consensus 242 -------------------------------------------------------------------------------~ 242 (501)
T PRK10762 242 -------------------------------------------------------------------------------L 242 (501)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred ccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcc
Q 001108 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (1156)
Q Consensus 722 ~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1156)
.. . .+ .
T Consensus 243 ~~-~-------------------------------------------------~~----------------------~-- 248 (501)
T PRK10762 243 ED-Q-------------------------------------------------YP----------------------R-- 248 (501)
T ss_pred cc-c-------------------------------------------------cc----------------------c--
Confidence 00 0 00 0
Q ss_pred cccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccCce
Q 001108 802 QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKL 881 (1156)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 881 (1156)
. . . +..+..++++|++.
T Consensus 249 --------------~-------------------~------~------~~~~~~l~~~~l~~------------------ 265 (501)
T PRK10762 249 --------------L-------------------D------K------APGEVRLKVDNLSG------------------ 265 (501)
T ss_pred --------------c-------------------c------c------CCCCcEEEEeCccc------------------
Confidence 0 0 0 00001245555541
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh----hcccceEEEeccCC---CCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IHSP 954 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~---~~~~ 954 (1156)
.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++ .+++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 343 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVL 343 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcC
Confidence 25999999999999999999999999999999999876 468999999977532 12345699999996 4678
Q ss_pred CCCHHHHHHHHHHhhCC---CCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001108 955 FVTIYESLLFSAWLRLS---PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1030 (1156)
Q Consensus 955 ~~Tv~e~l~~~~~lr~~---~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~ill 1030 (1156)
.+||.||+.+....... .....++.++.++++++.+++. +..++.+ ..|||||||||+||+||+.+|+|||
T Consensus 344 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lll 418 (501)
T PRK10762 344 GMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLI 418 (501)
T ss_pred CCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 89999999875321110 0012233345688999999995 5666653 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1031 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1031 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
|||||+|||+.++..+++.|+++.++|+|||++||+++ .+.+.||++++|++ |++++.|+..
T Consensus 419 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 480 (501)
T PRK10762 419 LDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTRE 480 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEeccc
Confidence 99999999999999999999999878999999999987 47889999999986 6888888764
No 21
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-65 Score=635.04 Aligned_cols=487 Identities=21% Similarity=0.235 Sum_probs=352.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCC----------CcC------c-cce
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD----------EFV------P-QRT 227 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~----------~~~------~-~~~ 227 (1156)
.++|+||||++++|++++|+|||||||||||++|+|.++|+ +|+|.++|..+. ... . ++.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 45999999999999999999999999999999999999988 999999986431 111 1 246
Q ss_pred EEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHH
Q 001108 228 AAYISQHD--NHIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (1156)
Q Consensus 228 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1156)
+|||+|++ .+++.+||+||+.++.+.. +.. + .+...+++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS-R---------------------------------EEAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHH
Confidence 99999987 5788899999999986532 110 0 011234677899
Q ss_pred HcCCcc---cccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 001108 305 VLGLDV---CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381 (1156)
Q Consensus 305 ~lgL~~---~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i 381 (1156)
.+||++ ..+. .+..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++||.+
T Consensus 152 ~~gL~~~~~~~~~-----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~-g~tvi~i 225 (623)
T PRK10261 152 QVRIPEAQTILSR-----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM-SMGVIFI 225 (623)
T ss_pred HCCCCChhhHHhC-----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 999964 2343 445799999999999999999999999999999999999999999999986533 4556678
Q ss_pred ecChhhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHH
Q 001108 382 LQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEF 461 (1156)
Q Consensus 382 ~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~ 461 (1156)
+|+...+.++||+|++|++|++++.|+++++.. .|.+....+++
T Consensus 226 tHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~l~---------------------------- 269 (623)
T PRK10261 226 THDMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRALL---------------------------- 269 (623)
T ss_pred cCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhhhh----------------------------
Confidence 999999999999999999999999998876521 00000000000
Q ss_pred HHHHHhchhhhhhHHhhcCCCCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Q 001108 462 AEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLF 541 (1156)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f 541 (1156)
.. . +
T Consensus 270 -~~-------------~--~------------------------------------------------------------ 273 (623)
T PRK10261 270 -AA-------------V--P------------------------------------------------------------ 273 (623)
T ss_pred -hc-------------c--C------------------------------------------------------------
Confidence 00 0 0
Q ss_pred hcccCCCcccccccchhHHHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHH
Q 001108 542 LRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVF 621 (1156)
Q Consensus 542 ~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~ 621 (1156)
.... ..
T Consensus 274 ---~~~~--~~--------------------------------------------------------------------- 279 (623)
T PRK10261 274 ---QLGA--MK--------------------------------------------------------------------- 279 (623)
T ss_pred ---cccc--cc---------------------------------------------------------------------
Confidence 0000 00
Q ss_pred HhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhh
Q 001108 622 LSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWC 701 (1156)
Q Consensus 622 i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~i 701 (1156)
T Consensus 280 -------------------------------------------------------------------------------- 279 (623)
T PRK10261 280 -------------------------------------------------------------------------------- 279 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHHhhcCCccccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 001108 702 SPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPR 781 (1156)
Q Consensus 702 sp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~ 781 (1156)
+.......+... . ..
T Consensus 280 ----------------~~~~~~~~~~~~---------~-----------------------------------~~----- 294 (623)
T PRK10261 280 ----------------GLDYPRRFPLIS---------L-----------------------------------EH----- 294 (623)
T ss_pred ----------------cccCCccccccc---------c-----------------------------------cc-----
Confidence 000000000000 0 00
Q ss_pred ceeeccccccccccccCCcccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEece
Q 001108 782 AVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEV 861 (1156)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 861 (1156)
. . .. .+.. . .. .. +.....++++|+
T Consensus 295 --------------~--~---------------~~-~~~~----------~------~~-~~------~~~~~~L~~~~l 319 (623)
T PRK10261 295 --------------P--A---------------KQ-EPPI----------E------QD-TV------VDGEPILQVRNL 319 (623)
T ss_pred --------------c--c---------------cc-Cccc----------c------cc-cc------cCCCceEEEeee
Confidence 0 0 00 0000 0 00 00 000114788999
Q ss_pred eeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-----
Q 001108 862 VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----- 936 (1156)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----- 936 (1156)
++.++..... ... ......+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++..
T Consensus 320 ~~~y~~~~~~-~~~-~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~ 395 (623)
T PRK10261 320 VTRFPLRSGL-LNR-VTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGK 395 (623)
T ss_pred EEEEcCCCcc-ccc-cCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHH
Confidence 8887421000 000 0012469999999999999999999999999999999999876 468999999986532
Q ss_pred -hcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHH
Q 001108 937 -ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 937 -~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGq 1012 (1156)
..+++.++|++|++ .+++.+||.|++.+....+. ....++.++.+.++++.++|. ...++. +.+|||||
T Consensus 396 ~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~~~LSgGq 468 (623)
T PRK10261 396 LQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----PHEFSGGQ 468 (623)
T ss_pred HHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHH
Confidence 12345799999997 57888999999988654321 112334456788999999996 455655 35799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||||+|||||+.+|+||||||||+|||+.++..|+++|+++.++ |.|||++|||++ .+.+.||++++|++ |++++.|
T Consensus 469 rQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g 546 (623)
T PRK10261 469 RQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIG 546 (623)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 99999999999999999999999999999999999999999765 899999999987 47788999999986 6899998
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
+.
T Consensus 547 ~~ 548 (623)
T PRK10261 547 PR 548 (623)
T ss_pred CH
Confidence 74
No 22
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.7e-65 Score=621.28 Aligned_cols=217 Identities=22% Similarity=0.325 Sum_probs=174.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEc-Ccc-
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GYP- 933 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~-g~~- 933 (1156)
++++|+++.++... .+++.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++ |.+
T Consensus 280 l~~~~l~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~ 349 (520)
T TIGR03269 280 IKVRNVSKRYISVD--------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEW 349 (520)
T ss_pred EEEeccEEEeccCC--------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCcc
Confidence 66778877763100 022469999999999999999999999999999999999875 468999996 532
Q ss_pred --CCh------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-----cccccc
Q 001108 934 --KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-----LRQSLV 1000 (1156)
Q Consensus 934 --~~~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-----~~~~~~ 1000 (1156)
... ...++.+||++|++.+++.+||+||+.+...+. ...+..++.+.++++.++|.+ ..++.
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 424 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY- 424 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-
Confidence 111 123456899999988889999999998754321 122333456788999999975 34444
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEE
Q 001108 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 1079 (1156)
Q Consensus 1001 ~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~ 1079 (1156)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||+++ .+.+.||+++
T Consensus 425 ----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~ 499 (520)
T TIGR03269 425 ----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAA 499 (520)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEE
Confidence 3579999999999999999999999999999999999999999999999764 899999999987 4778899999
Q ss_pred EEecCcEEEEecCC
Q 001108 1080 LMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1080 ~l~~Gg~~~~~g~~ 1093 (1156)
+|++ |+++..|+.
T Consensus 500 ~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 500 LMRD-GKIVKIGDP 512 (520)
T ss_pred EEEC-CEEEEECCH
Confidence 9986 688888763
No 23
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6.4e-65 Score=621.71 Aligned_cols=464 Identities=22% Similarity=0.285 Sum_probs=344.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCcCc-------cceEEEEcCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEFVP-------QRTAAYISQHD 235 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d 235 (1156)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|.++..... ++.++||+|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 359999999999999999999999999999999999998610 128999999998754321 24699999986
Q ss_pred C--CCCCCCHHHHHHHHhhhc-CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc--
Q 001108 236 N--HIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-- 310 (1156)
Q Consensus 236 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-- 310 (1156)
. +++.+||+|++.+..... +.. + .+....++++++.+||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR-R---------------------------------EAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHHHCCCCChH
Confidence 4 567789999988653221 100 0 011234677899999975
Q ss_pred -cccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 001108 311 -CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389 (1156)
Q Consensus 311 -~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~ 389 (1156)
..+.. +..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|++++... +.+||.++|+...+.
T Consensus 148 ~~~~~~-----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~ 221 (529)
T PRK15134 148 KRLTDY-----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQEL-NMGLLFITHNLSIVR 221 (529)
T ss_pred HHHhhC-----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhc-CCeEEEEcCcHHHHH
Confidence 23444 45699999999999999999999999999999999999999999999976532 445666788989999
Q ss_pred hhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhch
Q 001108 390 DLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFH 469 (1156)
Q Consensus 390 ~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1156)
++||+|++|++|++++.|+++++... |.. + +
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~~-------------------------~------------~---- 252 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PTH-------------------------P------------Y---- 252 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CCC-------------------------H------------H----
Confidence 99999999999999999987654210 000 0 0
Q ss_pred hhhhhHHhhcCCCCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 001108 470 VGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKD 549 (1156)
Q Consensus 470 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~ 549 (1156)
. +. ++...
T Consensus 253 -----------------------------------~-----~~----------------------------~~~~~---- 260 (529)
T PRK15134 253 -----------------------------------T-----QK----------------------------LLNSE---- 260 (529)
T ss_pred -----------------------------------H-----HH----------------------------HHHhC----
Confidence 0 00 00000
Q ss_pred ccccccchhHHHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccc
Q 001108 550 TVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGY 629 (1156)
Q Consensus 550 ~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~ 629 (1156)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHH
Q 001108 630 DSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQN 709 (1156)
Q Consensus 630 ~~~~~~ff~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~ 709 (1156)
+
T Consensus 261 --------------------------------------------------------------~----------------- 261 (529)
T PRK15134 261 --------------------------------------------------------------P----------------- 261 (529)
T ss_pred --------------------------------------------------------------c-----------------
Confidence 0
Q ss_pred HHHHHhhcCCccccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeecccc
Q 001108 710 AIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIE 789 (1156)
Q Consensus 710 al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~ 789 (1156)
.. .+.
T Consensus 262 -----------------~~----------------------------------------------~~~------------ 266 (529)
T PRK15134 262 -----------------SG----------------------------------------------DPV------------ 266 (529)
T ss_pred -----------------cc----------------------------------------------ccc------------
Confidence 00 000
Q ss_pred ccccccccCCcccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccc
Q 001108 790 SNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPE 869 (1156)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~ 869 (1156)
. + ... .+..++++|+++.++...
T Consensus 267 ---------~-------------------~-----------------------~~~------~~~~l~~~~l~~~~~~~~ 289 (529)
T PRK15134 267 ---------P-------------------L-----------------------PEP------ASPLLDVEQLQVAFPIRK 289 (529)
T ss_pred ---------c-------------------c-----------------------CCC------CCCcccccCcEEEeecCc
Confidence 0 0 000 000245666766653110
Q ss_pred hhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh------cccceE
Q 001108 870 EMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE------TFARIS 943 (1156)
Q Consensus 870 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~ 943 (1156)
.. .++ ..+.+.+|+||||+|++||++||+||||||||||+++|+|... .+|+|.++|.++... .+++.+
T Consensus 290 ~~-~~~-~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i 364 (529)
T PRK15134 290 GI-LKR-TVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRI 364 (529)
T ss_pred cc-ccc-ccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhce
Confidence 00 000 0012469999999999999999999999999999999999863 479999999765321 124568
Q ss_pred EEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHH
Q 001108 944 GYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAV 1020 (1156)
Q Consensus 944 gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~iA~ 1020 (1156)
||++|++ .+++.+||.||+.++...+.. ..+..+.++.+.++++.++|. +..+.. +..|||||||||+||+
T Consensus 365 ~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~ 438 (529)
T PRK15134 365 QVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIAR 438 (529)
T ss_pred EEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHH
Confidence 9999997 477889999999886543211 122334456788999999997 455655 3579999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1021 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1021 aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++. .+.+.||++++|++ |+++..|+.
T Consensus 439 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 439 ALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred HHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999865 899999999986 47788999999986 688888864
No 24
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.8e-65 Score=619.16 Aligned_cols=452 Identities=21% Similarity=0.287 Sum_probs=342.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+
T Consensus 25 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 101 (510)
T PRK15439 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNL 101 (510)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCC
Confidence 4999999999999999999999999999999999999998 9999999988754432 24699999999899999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.|+.... . +....++++++.+||++..+..++
T Consensus 102 tv~e~l~~~~~~~------~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~~---- 139 (510)
T PRK15439 102 SVKENILFGLPKR------Q--------------------------------ASMQKMKQLLAALGCQLDLDSSAG---- 139 (510)
T ss_pred cHHHHhhcccccc------h--------------------------------HHHHHHHHHHHHcCCCccccCChh----
Confidence 9999998853110 0 001235668899999877776554
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
.|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|++++. . +.+||.++|+..++.++||+|++|++|
T Consensus 140 -~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiivtHd~~~~~~~~d~i~~l~~G 216 (510)
T PRK15439 140 -SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-Q-GVGIVFISHKLPEIRQLADRISVMRDG 216 (510)
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 5999999999999999999999999999999999999999999998764 3 455666888999999999999999999
Q ss_pred eEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCC
Q 001108 402 QIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481 (1156)
Q Consensus 402 ~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (1156)
++++.|+++++... +.+ +.+..
T Consensus 217 ~i~~~g~~~~~~~~---------------~~~-----------------------------~~~~~-------------- 238 (510)
T PRK15439 217 TIALSGKTADLSTD---------------DII-----------------------------QAITP-------------- 238 (510)
T ss_pred EEEEecChHHcCHH---------------HHH-----------------------------HHHhC--------------
Confidence 99999987653210 000 00000
Q ss_pred CCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHH
Q 001108 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561 (1156)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~l 561 (1156)
+ ..... ....
T Consensus 239 ------------------------------------~--------------------------~~~~~-~~~~------- 248 (510)
T PRK15439 239 ------------------------------------A--------------------------AREKS-LSAS------- 248 (510)
T ss_pred ------------------------------------c--------------------------ccccc-cccc-------
Confidence 0 00000 0000
Q ss_pred HHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHH
Q 001108 562 FFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYA 641 (1156)
Q Consensus 562 ff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l 641 (1156)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK15439 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCcc
Q 001108 642 LLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721 (1156)
Q Consensus 642 ~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~ 721 (1156)
.. .
T Consensus 249 --------------------------------------------------~~---------------------------~ 251 (510)
T PRK15439 249 --------------------------------------------------QK---------------------------L 251 (510)
T ss_pred --------------------------------------------------cc---------------------------c
Confidence 00 0
Q ss_pred ccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcc
Q 001108 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (1156)
Q Consensus 722 ~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1156)
. ..+ + .
T Consensus 252 ~-----------------~~~---------------------------------~----------------------~-- 257 (510)
T PRK15439 252 W-----------------LEL---------------------------------P----------------------G-- 257 (510)
T ss_pred c-----------------ccc---------------------------------c----------------------c--
Confidence 0 000 0 0
Q ss_pred cccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccCce
Q 001108 802 QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKL 881 (1156)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 881 (1156)
. . .. . +..+..++++|++.
T Consensus 258 --------------~-------------------~--~~--~------~~~~~~l~~~~l~~------------------ 276 (510)
T PRK15439 258 --------------N-------------------R--RQ--Q------AAGAPVLTVEDLTG------------------ 276 (510)
T ss_pred --------------c-------------------c--cc--c------CCCCceEEEeCCCC------------------
Confidence 0 0 00 0 00011255666651
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh----cccceEEEeccCC---CCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSP 954 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~~~ 954 (1156)
.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++ .+++
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 14899999999999999999999999999999999865 4589999999765321 1234689999984 4778
Q ss_pred CCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001108 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1033 (1156)
Q Consensus 955 ~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDE 1033 (1156)
.+|+.|++.+....+..........++.++++++.+++. +..++.+ ..|||||||||+||+||+.+|+||||||
T Consensus 355 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDE 429 (510)
T PRK15439 355 DAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDE 429 (510)
T ss_pred CCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECC
Confidence 899999986431111110011122345678999999996 5666653 5699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1034 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1034 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
||+|||+.++..+++.|++++++|.|||++||+++ ++.+.||++++|++ |++++.|..+
T Consensus 430 Pt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~ 488 (510)
T PRK15439 430 PTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGA 488 (510)
T ss_pred CCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 99999999999999999999888999999999997 57889999999985 6888888654
No 25
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.3e-64 Score=615.70 Aligned_cols=456 Identities=19% Similarity=0.275 Sum_probs=342.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|||+++++|++++|+|||||||||||++|+|.++| + +|+|.++|+++..... ++.++||+|++.+++
T Consensus 15 ~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (500)
T TIGR02633 15 KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTW---DGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVP 91 (500)
T ss_pred EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHhCCEEEEeeccccCC
Confidence 499999999999999999999999999999999999886 5 8999999998765332 356999999988899
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccc-cccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA-DTMVGD 318 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~vg~ 318 (1156)
.+||+||+.|+......+.... ..+....++.+++.+||.+.. +..+
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~-- 139 (500)
T TIGR02633 92 ELSVAENIFLGNEITLPGGRMA------------------------------YNAMYLRAKNLLRELQLDADNVTRPV-- 139 (500)
T ss_pred CCcHHHHHHhhccccccccccC------------------------------HHHHHHHHHHHHHHcCCCCCcccCch--
Confidence 9999999988643210000000 000122456789999997654 3334
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|++++. . +++||.++|+..++.++||+|++|
T Consensus 140 ---~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tviiitHd~~~~~~~~d~i~~l 214 (500)
T TIGR02633 140 ---GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-H-GVACVYISHKLNEVKAVCDTICVI 214 (500)
T ss_pred ---hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999998864 3 455666889999999999999999
Q ss_pred cCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhh
Q 001108 399 SDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDEL 478 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 478 (1156)
++|++++.|+.+++.. ....+
T Consensus 215 ~~G~i~~~~~~~~~~~--------------------------------------------~~~~~--------------- 235 (500)
T TIGR02633 215 RDGQHVATKDMSTMSE--------------------------------------------DDIIT--------------- 235 (500)
T ss_pred eCCeEeeecCcccCCH--------------------------------------------HHHHH---------------
Confidence 9999987664321000 00000
Q ss_pred cCCCCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchh
Q 001108 479 RTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFA 558 (1156)
Q Consensus 479 ~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~ 558 (1156)
.+. + ..
T Consensus 236 -------------------------------------------------------------~~~--~--~~--------- 241 (500)
T TIGR02633 236 -------------------------------------------------------------MMV--G--RE--------- 241 (500)
T ss_pred -------------------------------------------------------------HHh--C--cc---------
Confidence 000 0 00
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHH
Q 001108 559 GATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFK 638 (1156)
Q Consensus 559 g~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~ 638 (1156)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T TIGR02633 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcC
Q 001108 639 QYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLG 718 (1156)
Q Consensus 639 ~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~ 718 (1156)
.+.
T Consensus 242 ----------------------------------------------------~~~------------------------- 244 (500)
T TIGR02633 242 ----------------------------------------------------ITS------------------------- 244 (500)
T ss_pred ----------------------------------------------------ccc-------------------------
Confidence 000
Q ss_pred CccccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccC
Q 001108 719 HSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIG 798 (1156)
Q Consensus 719 ~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1156)
. .+
T Consensus 245 -----------------------~--------------------------------~~---------------------- 247 (500)
T TIGR02633 245 -----------------------L--------------------------------YP---------------------- 247 (500)
T ss_pred -----------------------c--------------------------------cc----------------------
Confidence 0 00
Q ss_pred CcccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhccccc
Q 001108 799 GNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLE 878 (1156)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~ 878 (1156)
.. + . .. .+..++++|+++.+...
T Consensus 248 ----------------~~--~-------------------~--~~--------~~~~l~~~~l~~~~~~~---------- 270 (500)
T TIGR02633 248 ----------------HE--P-------------------H--EI--------GDVILEARNLTCWDVIN---------- 270 (500)
T ss_pred ----------------cc--c-------------------c--CC--------CCceEEEeCCccccccc----------
Confidence 00 0 0 00 00125666776544200
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh----hcccceEEEeccCC---C
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---I 951 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~---~ 951 (1156)
+++.+|+||||+|++||++||+|||||||||||++|+|...+ +.+|+|.++|.++.. ...++.+||++|+. .
T Consensus 271 ~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 349 (500)
T TIGR02633 271 PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHG 349 (500)
T ss_pred ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCC
Confidence 123589999999999999999999999999999999998652 247999999977532 12345689999995 5
Q ss_pred CCCCCCHHHHHHHHHH--hhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001108 952 HSPFVTIYESLLFSAW--LRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028 (1156)
Q Consensus 952 ~~~~~Tv~e~l~~~~~--lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~i 1028 (1156)
+++.+||+||+.++.. ............++.++++++.+++.+ ..++.+ ..|||||||||+||++|+.+|++
T Consensus 350 l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~l 424 (500)
T TIGR02633 350 IVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRV 424 (500)
T ss_pred cCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCE
Confidence 7888999999987542 111001122334466889999999964 456553 46999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1029 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1029 llLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|||||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.||++++|++ |+++..++.
T Consensus 425 llLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~ 487 (500)
T TIGR02633 425 LILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVN 487 (500)
T ss_pred EEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcc
Confidence 9999999999999999999999999888999999999987 57889999999986 677777654
No 26
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.6e-63 Score=664.88 Aligned_cols=210 Identities=19% Similarity=0.241 Sum_probs=177.9
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
+.++|+||+++|+. +...+|+||||+|+|||++||+|+||||||||+++|+|... .+|+|.|||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 57999999999962 12469999999999999999999999999999999999864 47999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 1003 (1156)
+.. ..+++.++||||++.+++. |++|||.... . ..++.++++++.++|.+.. |..++.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~----~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e- 1349 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------Q----WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD- 1349 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------C----CCHHHHHHHHHHCCCHHHHHhCcccccccccc-
Confidence 754 4567889999999999874 9999995321 1 1245688999999886543 444444
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+..+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1350 ~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 345799999999999999999999999999999999999999999999875 4799999999985 4567999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 1427 -G~ivE~g~p 1435 (1490)
T TIGR01271 1427 -SSVKQYDSI 1435 (1490)
T ss_pred -CEEEEeCCH
Confidence 699999874
No 27
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-64 Score=613.11 Aligned_cols=450 Identities=22% Similarity=0.310 Sum_probs=341.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC----ccceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~----~~~~~~yv~Q~d~~~~~l 241 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+
T Consensus 18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM 94 (501)
T ss_pred EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCC
Confidence 4999999999999999999999999999999999999998 999999998875332 135799999998889999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.++......+.. . ..+....++.+++.+||++..+..+
T Consensus 95 tv~~~l~~~~~~~~~~~~----~---------------------------~~~~~~~~~~~l~~~~l~~~~~~~~----- 138 (501)
T PRK11288 95 TVAENLYLGQLPHKGGIV----N---------------------------RRLLNYEAREQLEHLGVDIDPDTPL----- 138 (501)
T ss_pred CHHHHHHhcccccccCCC----C---------------------------HHHHHHHHHHHHHHcCCCCCcCCch-----
Confidence 999999986421100000 0 0001224567889999986666554
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++. . +++||.++|+..++.++||+|++|++|
T Consensus 139 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiiitHd~~~~~~~~d~i~~l~~G 216 (501)
T PRK11288 139 KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-E-GRVILYVSHRMEEIFALCDAITVFKDG 216 (501)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998754 3 455666888889999999999999999
Q ss_pred eEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCC
Q 001108 402 QIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481 (1156)
Q Consensus 402 ~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (1156)
+++..++..+. .+.++..+.
T Consensus 217 ~i~~~~~~~~~-------------------------------------------~~~~~~~~~----------------- 236 (501)
T PRK11288 217 RYVATFDDMAQ-------------------------------------------VDRDQLVQA----------------- 236 (501)
T ss_pred EEEeecCcccc-------------------------------------------CCHHHHHHH-----------------
Confidence 99865421100 000000000
Q ss_pred CCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHH
Q 001108 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561 (1156)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~l 561 (1156)
+. . ..
T Consensus 237 -----------------------------------------------------------~~--~--~~------------ 241 (501)
T PRK11288 237 -----------------------------------------------------------MV--G--RE------------ 241 (501)
T ss_pred -----------------------------------------------------------hc--C--CC------------
Confidence 00 0 00
Q ss_pred HHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHH
Q 001108 562 FFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYA 641 (1156)
Q Consensus 562 ff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l 641 (1156)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK11288 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCcc
Q 001108 642 LLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721 (1156)
Q Consensus 642 ~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~ 721 (1156)
.
T Consensus 242 -------------------------------------------------------------------------------~ 242 (501)
T PRK11288 242 -------------------------------------------------------------------------------I 242 (501)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred ccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcc
Q 001108 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (1156)
Q Consensus 722 ~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1156)
. .. ..
T Consensus 243 ~-----------------------~~---------------------------~~------------------------- 247 (501)
T PRK11288 243 G-----------------------DI---------------------------YG------------------------- 247 (501)
T ss_pred c-----------------------cc---------------------------cc-------------------------
Confidence 0 00 00
Q ss_pred cccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccCce
Q 001108 802 QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKL 881 (1156)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 881 (1156)
. .+ . +..+..++++|+++.
T Consensus 248 --------------~-~~-----------------------~------~~~~~~l~~~~~~~~----------------- 266 (501)
T PRK11288 248 --------------Y-RP-----------------------R------PLGEVRLRLDGLKGP----------------- 266 (501)
T ss_pred --------------c-cc-----------------------c------CCCCcEEEEeccccC-----------------
Confidence 0 00 0 000012455666421
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh----hcccceEEEeccCC---CCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IHSP 954 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~---~~~~ 954 (1156)
.+++|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 37999999999999999999999999999999999875 568999999976532 12345689999986 4788
Q ss_pred CCCHHHHHHHHHHhhCCC-C--CChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001108 955 FVTIYESLLFSAWLRLSP-E--VDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1030 (1156)
Q Consensus 955 ~~Tv~e~l~~~~~lr~~~-~--~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~ill 1030 (1156)
.+|+.||+.+........ . ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+|||
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEE
Confidence 899999998753221100 0 01223345678999999994 5666664 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCC
Q 001108 1031 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 1095 (1156)
Q Consensus 1031 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~~ 1095 (1156)
|||||+|||+.++..++++|++++++|.|||++|||++ ++.+.||++++|++ |++++.|..+.
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 482 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQ 482 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 99999999999999999999999888999999999987 47889999999985 68899987653
No 28
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5.5e-63 Score=659.66 Aligned_cols=211 Identities=23% Similarity=0.259 Sum_probs=178.9
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
+.++|+||+++|+. +...+|+||||+|+|||++||+|+||||||||+++|.|... +.+|+|.|||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 57999999999852 12359999999999999999999999999999999999876 568999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 1003 (1156)
+.. ..+++.+|||||++.++.. |++|||... .+.+ ++.++++++.+++.+.. |+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 754 4577889999999998864 999999532 1222 35688999999887643 4445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1004 GVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~-p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
..+||||||||++|||||+++ |+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|+
T Consensus 1443 -G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 -GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD 1518 (1560)
T ss_pred -cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE
Confidence 467999999999999999996 89999999999999999999999999875 4799999999975 567899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 1519 ~-G~VvE~Gt~ 1528 (1560)
T PTZ00243 1519 H-GAVAEMGSP 1528 (1560)
T ss_pred C-CEEEEECCH
Confidence 6 799999974
No 29
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-63 Score=602.67 Aligned_cols=449 Identities=18% Similarity=0.288 Sum_probs=339.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1156)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 35999999999999999999999999999999999999998 9999999998754321 3569999999888999
Q ss_pred CCHHHHHHHHhh-hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 241 MTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 241 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
+||+||+.++.. ..+.... . .+....++.+++.+||.+..++.++
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~-----~---------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 133 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVD-----Q---------------------------DKMYRDTKAIFDELDIDIDPRAKVA-- 133 (491)
T ss_pred CCHHHHhhcccccccccccC-----H---------------------------HHHHHHHHHHHHHcCCCCCccCchh--
Confidence 999999987642 1110000 0 0011245678899999876666554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.|||||||||+||++|+.+|++|||||||+|||+.+..++.+.|++++. . +.+||.++|+..++.++||+|++|+
T Consensus 134 ---~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tvii~tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 134 ---TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-R-GCGIVYISHKMEEIFQLCDEITILR 208 (491)
T ss_pred ---hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 6999999999999999999999999999999999999999999998754 3 4455667889999999999999999
Q ss_pred CCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhc
Q 001108 400 DGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR 479 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (1156)
+|++++.|+++++.. .+..+.
T Consensus 209 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~--------------- 229 (491)
T PRK10982 209 DGQWIATQPLAGLTM--------------------------------------------DKIIAM--------------- 229 (491)
T ss_pred CCEEEeecChhhCCH--------------------------------------------HHHHHH---------------
Confidence 999998876542100 000000
Q ss_pred CCCCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhH
Q 001108 480 TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAG 559 (1156)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g 559 (1156)
+. + ..
T Consensus 230 -------------------------------------------------------------~~--~--~~---------- 234 (491)
T PRK10982 230 -------------------------------------------------------------MV--G--RS---------- 234 (491)
T ss_pred -------------------------------------------------------------Hh--C--CC----------
Confidence 00 0 00
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHH
Q 001108 560 ATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQ 639 (1156)
Q Consensus 560 ~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~ 639 (1156)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCC
Q 001108 640 YALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGH 719 (1156)
Q Consensus 640 ~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 719 (1156)
.
T Consensus 235 ---------------------------------------------------~---------------------------- 235 (491)
T PRK10982 235 ---------------------------------------------------L---------------------------- 235 (491)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred ccccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCC
Q 001108 720 SWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGG 799 (1156)
Q Consensus 720 ~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1156)
.. .+ +
T Consensus 236 --~~------------------------------------------------~~--~----------------------- 240 (491)
T PRK10982 236 --TQ------------------------------------------------RF--P----------------------- 240 (491)
T ss_pred --cc------------------------------------------------cc--c-----------------------
Confidence 00 00 0
Q ss_pred cccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccC
Q 001108 800 NVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLED 879 (1156)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~ 879 (1156)
.. . . . + .+..++++|+++..
T Consensus 241 ---------------~~----------------------~-~-~------~-~~~~i~~~~l~~~~-------------- 260 (491)
T PRK10982 241 ---------------DK----------------------E-N-K------P-GEVILEVRNLTSLR-------------- 260 (491)
T ss_pred ---------------cc----------------------c-C-C------C-CCcEEEEeCccccc--------------
Confidence 00 0 0 0 0 01136677776641
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh----cccceEEEeccCC---CC
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IH 952 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~ 952 (1156)
+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++... ..++.+||++|++ .+
T Consensus 261 -~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~ 337 (491)
T PRK10982 261 -QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGI 337 (491)
T ss_pred -CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCc
Confidence 138999999999999999999999999999999999876 4689999999765421 2245589999985 35
Q ss_pred CCCCCHHHHHHHHHH--hhCCCC-CChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001108 953 SPFVTIYESLLFSAW--LRLSPE-VDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028 (1156)
Q Consensus 953 ~~~~Tv~e~l~~~~~--lr~~~~-~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~i 1028 (1156)
++.+|+.+|..+... ...... ......++.+.++++.+++. +..+.. +.+|||||||||+||++|+.+|+|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~i 412 (491)
T PRK10982 338 YAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPEI 412 (491)
T ss_pred ccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCCE
Confidence 778888877433211 000001 12223345678899999985 445555 357999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1029 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1029 llLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |+++..++.
T Consensus 413 llLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~ 475 (491)
T PRK10982 413 LMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDT 475 (491)
T ss_pred EEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEcc
Confidence 9999999999999999999999999888999999999987 47789999999986 677776654
No 30
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.4e-62 Score=594.31 Aligned_cols=214 Identities=19% Similarity=0.302 Sum_probs=165.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|.... ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 378889988773 24589999999999999999999999999999999996431 1479999999764
Q ss_pred Ch----hcccceEEEeccCCCCCC--CCCHHHHHHHHHHh--hCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCC
Q 001108 935 KQ----ETFARISGYCEQNDIHSP--FVTIYESLLFSAWL--RLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 1005 (1156)
Q Consensus 935 ~~----~~~~~~~gyv~q~~~~~~--~~Tv~e~l~~~~~l--r~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~ 1005 (1156)
.. ...++.+||++|++.++. ..|+++++.+.... ....... ...++.++++++.++|.+ ..+..+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~----- 399 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF----- 399 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----
Confidence 21 123456999999876543 24676666543210 0111111 223456889999999986 666653
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCcHHHHH-hcCeEEEEec
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-AFDELFLMKR 1083 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~i~~-~~d~v~~l~~ 1083 (1156)
..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++| .|||++||+++ ++.+ .+|++++|++
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~ 478 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD 478 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC
Confidence 5699999999999999999999999999999999999999999999998776 46999999986 3655 5899999987
Q ss_pred CcEEEEe
Q 001108 1084 GGQEIYV 1090 (1156)
Q Consensus 1084 Gg~~~~~ 1090 (1156)
| ++++.
T Consensus 479 G-~i~~~ 484 (490)
T PRK10938 479 G-DIYRY 484 (490)
T ss_pred C-ceEEe
Confidence 5 55543
No 31
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.1e-60 Score=583.91 Aligned_cols=201 Identities=20% Similarity=0.288 Sum_probs=164.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECC-c-
Confidence 488999988773 2469999999999999999999999999999999999875 4689999853 2
Q ss_pred ChhcccceEEEeccCC-CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHH
Q 001108 935 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGq 1012 (1156)
..+||++|++ .+++.+||+|++.+....... ... ...+.++++.+++.+ ..++. +..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKV---GNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhcccccc---ccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999986 677889999999886432211 111 123457899999964 44554 35799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-Eec
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 1091 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~-~~g 1091 (1156)
||||+||++|+.+|++|||||||+|||+.++..+++.|+++. | |||++||+++ .+...||++++|++||++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 4 8999999987 4778899999998767766 455
Q ss_pred C
Q 001108 1092 P 1092 (1156)
Q Consensus 1092 ~ 1092 (1156)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
No 32
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=5e-60 Score=515.36 Aligned_cols=470 Identities=25% Similarity=0.336 Sum_probs=366.1
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCceeEEEEcCccCCCcCcc-------ceEEEEcC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEFVPQ-------RTAAYISQ 233 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~nG~~~~~~~~~-------~~~~yv~Q 233 (1156)
....++++|||.+++||.+||+|.||||||-..+.++|+++. ....+|+|.|+|.++-....+ ..|+.|+|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 345699999999999999999999999999999999999876 345689999999987544321 46999999
Q ss_pred CC--CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccc
Q 001108 234 HD--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1156)
Q Consensus 234 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1156)
++ .+.|-.|+..-|.-..+++.... ...++.++-++|+..|+++-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg~~---------------------------------~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRGLS---------------------------------RAAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhccc---------------------------------HHHHHHHHHHHHHHcCCCch
Confidence 96 56777788877776665542111 11223456778889999876
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 001108 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1156)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1156)
...+ +.++.+|||||||||.||.||+.+|++||-||||++||.....+|.+.|+++-. ..+..++.|+|+..-+-.+
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~-~~gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA-ELGMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHH-HhCcEEEEEeccHHHHHHh
Confidence 5433 467889999999999999999999999999999999999999999999999865 4566777799999999999
Q ss_pred cCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhh
Q 001108 392 FDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVG 471 (1156)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1156)
+|+|+||.+|++|++|+.+.+.. .|.+ ||.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------pYT----------------- 254 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQH-------------------------PYT----------------- 254 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------hHH-----------------
Confidence 99999999999999998776522 1111 000
Q ss_pred hhhHHhhcCCCCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCccc
Q 001108 472 QKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTV 551 (1156)
Q Consensus 472 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~ 551 (1156)
|.++ +
T Consensus 255 ---------------------------------------r~Ll------------------------------~------ 259 (534)
T COG4172 255 ---------------------------------------RKLL------------------------------A------ 259 (534)
T ss_pred ---------------------------------------HHHH------------------------------h------
Confidence 0000 0
Q ss_pred ccccchhHHHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccC
Q 001108 552 TDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDS 631 (1156)
Q Consensus 552 ~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~ 631 (1156)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHH
Q 001108 632 NAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAI 711 (1156)
Q Consensus 632 ~~~~ff~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al 711 (1156)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCccccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeecccccc
Q 001108 712 VANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESN 791 (1156)
Q Consensus 712 ~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.| |
T Consensus 260 --ae------------------------------------------------------------P--------------- 262 (534)
T COG4172 260 --AE------------------------------------------------------------P--------------- 262 (534)
T ss_pred --cC------------------------------------------------------------C---------------
Confidence 00 0
Q ss_pred ccccccCCcccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchh
Q 001108 792 EQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEM 871 (1156)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~ 871 (1156)
. + .+ ....+..|..++.+|+...++.++.+
T Consensus 263 -----~-g------------------~~--------------------------~p~~~~~~~ll~~~~v~v~f~i~~g~ 292 (534)
T COG4172 263 -----S-G------------------DP--------------------------PPLPEDAPVLLEVEDLRVWFPIKGGF 292 (534)
T ss_pred -----C-C------------------CC--------------------------CCCCCCCCceEEecceEEEEecCCcc
Confidence 0 0 00 00000112245556665555544332
Q ss_pred hhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh------hcccceEEE
Q 001108 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ------ETFARISGY 945 (1156)
Q Consensus 872 ~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy 945 (1156)
-.. ......++++||++.++||.+||+|.||||||||=.+|.++.. .+|.|.++|.++.. ...++.+-.
T Consensus 293 ~~r--~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~---s~G~I~F~G~~i~~~~~~~mrplR~~mQv 367 (534)
T COG4172 293 LRR--TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP---SQGEIRFDGQDIDGLSRKEMRPLRRRMQV 367 (534)
T ss_pred ccc--cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC---cCceEEECCccccccChhhhhhhhhhceE
Confidence 111 1123569999999999999999999999999999999999875 35999999988753 235677899
Q ss_pred eccCCC--CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHH
Q 001108 946 CEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVEL 1022 (1156)
Q Consensus 946 v~q~~~--~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~iA~aL 1022 (1156)
|+|||. +.|.+||.+-+.-+..... +..+..++++++.++|+.+||++- +++. +.++|||||||++|||||
T Consensus 368 VFQDPygSLsPRmtV~qII~EGL~vh~-~~ls~~eR~~rv~~aL~EVGLDp~~r~RY-----PhEFSGGQRQRIAIARAl 441 (534)
T COG4172 368 VFQDPYGSLSPRMTVGQIIEEGLRVHE-PKLSAAERDQRVIEALEEVGLDPATRNRY-----PHEFSGGQRQRIAIARAL 441 (534)
T ss_pred EEeCCCCCCCcccCHHHHhhhhhhhcC-CCCCHHHHHHHHHHHHHHcCCChhHhhcC-----CcccCcchhhHHHHHHHH
Confidence 999984 6799999999887766654 356778899999999999999874 3443 357999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1023 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1023 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
+-+|++++||||||+||..-+..|.++|+++.+ .|.+-++++||+.. +-.+||++++|++ |++|..|+.
T Consensus 442 iLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~V-vrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 442 ILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAV-VRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred hcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHHhhceEEEEeC-CEEeeeCCH
Confidence 999999999999999999999999999999964 49999999999874 7778999999986 799999985
No 33
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-60 Score=576.77 Aligned_cols=198 Identities=17% Similarity=0.252 Sum_probs=164.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++ ++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 588999998874 2458999999999999999999999999999999999865 46899999873
Q ss_pred ChhcccceEEEeccCCC--CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHH
Q 001108 935 KQETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~--~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgG 1011 (1156)
+.+||++|++. +.+.+|++|++.+.. .. . ..++.++++++.+++. +..+.. +..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCc-----ccccCHH
Confidence 35899999864 556799999986421 11 1 1134578899999984 555655 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-Ee
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 1090 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~-~~ 1090 (1156)
||||++||++|+.+|+||||||||+|||+.++..+++.|+++ +.|||++||+++ .+...||++++|++| +++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g-~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPD-GVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECC-eEEEcC
Confidence 999999999999999999999999999999999999999886 459999999987 477889999999875 555 77
Q ss_pred cCC
Q 001108 1091 GPL 1093 (1156)
Q Consensus 1091 g~~ 1093 (1156)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 763
No 34
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=4.2e-59 Score=572.34 Aligned_cols=201 Identities=18% Similarity=0.273 Sum_probs=164.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.+++ +
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~-~- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGE-T- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECC-c-
Confidence 478999988773 2469999999999999999999999999999999999865 4689999854 2
Q ss_pred ChhcccceEEEeccCC-CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHH
Q 001108 935 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGq 1012 (1156)
..+||++|++ .+++.+||.|++.+...... .... +..+.++++.+++.+ ..+.. +..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999986 47788999999988643221 1111 123557899999864 44554 35699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-Eec
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 1091 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~-~~g 1091 (1156)
||||+||++|+.+|++|||||||+|||+.++..+++.|+++. .|||++||+++ .+...||++++|++||+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999987 4778899999998777766 445
Q ss_pred C
Q 001108 1092 P 1092 (1156)
Q Consensus 1092 ~ 1092 (1156)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
No 35
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-57 Score=557.58 Aligned_cols=197 Identities=22% Similarity=0.344 Sum_probs=160.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.+.++|+++.++ ++.+|+|+||+|++|+++||+|||||||||||++|+|... +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 478899988873 3569999999999999999999999999999999999875 46899998641
Q ss_pred ChhcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHH
Q 001108 935 KQETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgG 1011 (1156)
..+||++|+. .+.+..|+.+++.- .. . ......+.++++.+++.+ ..+..+ ..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~--~----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---LA--P----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---hC--c----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34456677776531 11 1 122345788999999863 455553 469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-Ee
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 1090 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~-~~ 1090 (1156)
|||||+||++|+.+|+||||||||+|||+.+...+.++|+++ . .|||++|||+. .+...||++++|.+ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 3 49999999987 47788999999986 5665 77
Q ss_pred cCC
Q 001108 1091 GPL 1093 (1156)
Q Consensus 1091 g~~ 1093 (1156)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 764
No 36
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.2e-56 Score=557.79 Aligned_cols=202 Identities=23% Similarity=0.323 Sum_probs=164.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.+.++|+++.++ ++.+|+||||+|++|+++||+|||||||||||++|+|... +..|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 478899988773 3469999999999999999999999999999999999865 46899988 4322
Q ss_pred ChhcccceEEEeccCC-CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHH
Q 001108 935 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGq 1012 (1156)
.+||++|+. .+++.+||.|++.+..... ... .....+.++++.+++. +..++.+ ..|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 489999975 5788899999998753211 011 1123567888888885 3455543 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-cCcEEEEec
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-RGGQEIYVG 1091 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~-~Gg~~~~~g 1091 (1156)
||||+||++|+.+|++|||||||+|||+.+...+.++|+++ +.|||++|||+. .+...||++++|. +|.-..|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999876 459999999986 4778899999997 565556666
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
..
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 54
No 37
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=5.8e-57 Score=550.99 Aligned_cols=211 Identities=20% Similarity=0.229 Sum_probs=171.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ + ..|+++||+|++||++||+||||||||||+++|+|... +.+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 477888887663 1 24899999999999999999999999999999999876 468999885
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
..+||++|+..+.+.+||+|++.+..... .. ...++++++.++|.+..++.+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDDL-----GS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 14899999988888899999998753211 11 124678999999988777764 569999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||+||++|+.+|+||||||||+|||+.++..++++|++++++ |+|||+++||+. .+...+|++++|+ | ++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~-~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G-EPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C-cceeeeec
Confidence 999999999999999999999999999999999999999764 899999999986 4778899999996 3 66766663
Q ss_pred CCc---chhHHHHHHhC
Q 001108 1094 GRH---SCHLISYFEAI 1107 (1156)
Q Consensus 1094 ~~~---~~~~~~~f~~~ 1107 (1156)
... ...+-.|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 211 12334455555
No 38
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-55 Score=509.23 Aligned_cols=447 Identities=23% Similarity=0.373 Sum_probs=347.6
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc----ceEEEEcCCCCCCC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIG 239 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1156)
..++|+||||.+++||+++|+|.||||||||+|+|+|.++|+ +|+|.+||.+..-..++ .-|+.|.|+..++|
T Consensus 20 gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p 96 (500)
T COG1129 20 GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVP 96 (500)
T ss_pred CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhccC
Confidence 356999999999999999999999999999999999999999 99999999988655553 46899999999999
Q ss_pred CCCHHHHHHHHhhhcCC-CchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 240 EMTVRETLAFSARCQGV-GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
++||.|||.++...... +- + ...+.+..+..+|+.+|++...++.|++
T Consensus 97 ~LsVaeNifLgre~~~~~g~----i---------------------------d~~~m~~~A~~~l~~lg~~~~~~~~v~~ 145 (500)
T COG1129 97 NLSVAENIFLGREPTRRFGL----I---------------------------DRKAMRRRARELLARLGLDIDPDTLVGD 145 (500)
T ss_pred CccHHHHhhcccccccCCCc----c---------------------------CHHHHHHHHHHHHHHcCCCCChhhhhhh
Confidence 99999999887643321 10 0 0112234567789999997557888875
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
||+||||-|.||||+..+++|++|||||++|+...+..+++.++++. ..+..||.|+|...|++++||+|.||
T Consensus 146 -----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk--~~Gv~ii~ISHrl~Ei~~i~DritVl 218 (500)
T COG1129 146 -----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK--AQGVAIIYISHRLDEVFEIADRITVL 218 (500)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEcCcHHHHHHhcCEEEEE
Confidence 99999999999999999999999999999999999999999999975 45777888999999999999999999
Q ss_pred cCCeEEEEcCh-hHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHh
Q 001108 399 SDGQIVYQGPR-ELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDE 477 (1156)
Q Consensus 399 ~~G~iv~~G~~-~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1156)
.||+++..++. .+. +.+++.
T Consensus 219 RDG~~v~~~~~~~~~--------------------------------------------~~~~lv--------------- 239 (500)
T COG1129 219 RDGRVVGTRPTAAET--------------------------------------------SEDELV--------------- 239 (500)
T ss_pred eCCEEeeecccccCC--------------------------------------------CHHHHH---------------
Confidence 99999876652 211 000000
Q ss_pred hcCCCCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccch
Q 001108 478 LRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIF 557 (1156)
Q Consensus 478 l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~ 557 (1156)
T Consensus 240 -------------------------------------------------------------------------------- 239 (500)
T COG1129 240 -------------------------------------------------------------------------------- 239 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHH
Q 001108 558 AGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFF 637 (1156)
Q Consensus 558 ~g~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff 637 (1156)
-.|+|
T Consensus 240 ------------------------------------------------------------------~~MvG--------- 244 (500)
T COG1129 240 ------------------------------------------------------------------RLMVG--------- 244 (500)
T ss_pred ------------------------------------------------------------------HHhhC---------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhc
Q 001108 638 KQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFL 717 (1156)
Q Consensus 638 ~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~ 717 (1156)
T Consensus 245 -------------------------------------------------------------------------------- 244 (500)
T COG1129 245 -------------------------------------------------------------------------------- 244 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeecccccccccccc
Q 001108 718 GHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRI 797 (1156)
Q Consensus 718 ~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1156)
..... .| + .
T Consensus 245 -r~~~~------------------------------------------------~~--~--~------------------ 253 (500)
T COG1129 245 -RELED------------------------------------------------LF--P--E------------------ 253 (500)
T ss_pred -cchhh------------------------------------------------hc--c--c------------------
Confidence 00000 00 0 0
Q ss_pred CCcccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccc
Q 001108 798 GGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVL 877 (1156)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~ 877 (1156)
. ... ...+..+++++++..
T Consensus 254 -----------------------------------------~-~~~------~~~~~~l~v~~l~~~------------- 272 (500)
T COG1129 254 -----------------------------------------P-PEE------GIGEPVLEVRNLSGG------------- 272 (500)
T ss_pred -----------------------------------------c-ccc------CCCCcEEEEecCCCC-------------
Confidence 0 000 000112334443311
Q ss_pred cCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh----hcccceEEEeccCC---
Q 001108 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND--- 950 (1156)
Q Consensus 878 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~--- 950 (1156)
..++||||++++||++||.|-=|||+|-|+++|.|... ...|+|.++|.+... ...+.-++|||.|.
T Consensus 273 ----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~ 346 (500)
T COG1129 273 ----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSE 346 (500)
T ss_pred ----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccC
Confidence 14799999999999999999999999999999999654 458999999987643 23455799999874
Q ss_pred CCCCCCCHHHHHHHHHHhhCCC--CCChHHHHHHHHHHHHHcCCCcccc-cccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001108 951 IHSPFVTIYESLLFSAWLRLSP--EVDSETRKMFIDEVMELVELNPLRQ-SLVGLPGVSGLSTEQRKRLTIAVELVANPS 1027 (1156)
Q Consensus 951 ~~~~~~Tv~e~l~~~~~lr~~~--~~~~~~~~~~v~~~l~~l~l~~~~~-~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~ 1027 (1156)
.++..++|++|+.++...+... -.+....++.+++..+.+++....- .. +..||||++|||.|||.|..+|+
T Consensus 347 Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~ 421 (500)
T COG1129 347 GLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPK 421 (500)
T ss_pred cCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCC
Confidence 4678899999998883323221 2455556677889999998864321 22 46799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1028 illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
||||||||.|+|..++..|.++|++++++|++||++|-++. |+...||||++|.+ |+++-.
T Consensus 422 vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e 482 (500)
T COG1129 422 VLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGE 482 (500)
T ss_pred EEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEE
Confidence 99999999999999999999999999999999999999986 79999999999996 566653
No 39
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.2e-54 Score=536.83 Aligned_cols=199 Identities=19% Similarity=0.278 Sum_probs=157.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|+ +++.+|+||||+|++|+++||+|||||||||||++|+|... +..|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 488999998873 12358999999999999999999999999999999999876 46799988652
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqr 1013 (1156)
..+||++|+.. +.+++.++..+...... .... ++.+.++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~-~~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHHV--DGLDLSSNPLLYMMRCF-PGVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEecccc--ccCCcchhHHHHHHHhc-CCCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 35899999752 34566666433211111 1111 245778999999974 44544 357999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-EecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~-~~g~ 1092 (1156)
|||+||++|+.+|++|||||||+|||+.+...+++.|++. . .|||++||++. .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999999888765 3 49999999987 47788999999986 5666 6665
No 40
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.5e-53 Score=506.81 Aligned_cols=220 Identities=28% Similarity=0.331 Sum_probs=172.1
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
+++|+|+|+.+.+|+.++|+|+|||||||||++|+|...|+ +|+|...+. -+++|++|+....+..||.
T Consensus 16 ~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~--------~~v~~l~Q~~~~~~~~tv~ 84 (530)
T COG0488 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG--------LRVGYLSQEPPLDPEKTVL 84 (530)
T ss_pred ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC--------ceEEEeCCCCCcCCCccHH
Confidence 45999999999999999999999999999999999999998 999988652 3699999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChH---HHHHH-HhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID---VYMKA-IATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~-~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1156)
+.+.-+... .++...+..... ...++++.. .+... ...++.+.+.+++.++..||++.. ++.++
T Consensus 85 ~~v~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~--- 152 (530)
T COG0488 85 DYVIEGFGE-----LRELLAELEEAY---ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS--- 152 (530)
T ss_pred HHHHhhhHH-----HHHHHHHHHHHH---HhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh---
Confidence 999866421 122222221111 111222111 11111 122345566788899999999876 66665
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
.||||||.||+||++|+.+|++|+|||||++||..+..++-+.|++ ..+ ++|.++|++..+-+.|++|+-++.
T Consensus 153 --~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~----~~g-tviiVSHDR~FLd~V~t~I~~ld~ 225 (530)
T COG0488 153 --SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR----YPG-TVIVVSHDRYFLDNVATHILELDR 225 (530)
T ss_pred --hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCC-cEEEEeCCHHHHHHHhhheEEecC
Confidence 5999999999999999999999999999999999999999999985 234 566689999999999999999999
Q ss_pred CeE-EEEcChhHHHH
Q 001108 401 GQI-VYQGPRELVLE 414 (1156)
Q Consensus 401 G~i-v~~G~~~~~~~ 414 (1156)
|++ .|.|.++...+
T Consensus 226 g~l~~y~Gny~~~~~ 240 (530)
T COG0488 226 GKLTPYKGNYSSYLE 240 (530)
T ss_pred CceeEecCCHHHHHH
Confidence 988 67787765543
No 41
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=4.7e-51 Score=460.94 Aligned_cols=457 Identities=22% Similarity=0.317 Sum_probs=354.0
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc----ceEEEEcCCCCCCC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIG 239 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1156)
...+++|||+.+++||+.||+|.||||||||+++|.|.+.|+ +|+|.++|+++.-..|+ ..||.|.||..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 456999999999999999999999999999999999999999 99999999998665553 46899999999999
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
++||.|||..+..-... .+. ...+...+++.+.+.+||+-..|..|++
T Consensus 93 ~lTV~ENiiLg~e~~~~-~~~------------------------------~~~~~~~~i~~l~~~yGl~vdp~~~V~d- 140 (501)
T COG3845 93 TLTVAENIILGLEPSKG-GLI------------------------------DRRQARARIKELSERYGLPVDPDAKVAD- 140 (501)
T ss_pred ccchhhhhhhcCccccc-ccc------------------------------CHHHHHHHHHHHHHHhCCCCCccceeec-
Confidence 99999999987632100 000 0011234567888999999999988875
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
||=||||||.|-++|+.+|++|||||||+-|-|....++++.|++++. . +.+||.|+|-..|+.+.||++-||.
T Consensus 141 ----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~-G~tIi~ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-E-GKTIIFITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhhCeeEEEe
Confidence 999999999999999999999999999999999999999999999875 4 4555668999999999999999999
Q ss_pred CCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhc
Q 001108 400 DGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR 479 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (1156)
.|+++-.-++. . + .+.+++++.
T Consensus 215 ~Gkvvgt~~~~----------------~------------------------~---~t~~ela~l--------------- 236 (501)
T COG3845 215 RGKVVGTVDPV----------------A------------------------E---TTEEELAEL--------------- 236 (501)
T ss_pred CCeEEeeecCC----------------C------------------------C---CCHHHHHHH---------------
Confidence 99986432110 0 0 000000000
Q ss_pred CCCCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhH
Q 001108 480 TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAG 559 (1156)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g 559 (1156)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHH
Q 001108 560 ATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQ 639 (1156)
Q Consensus 560 ~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~ 639 (1156)
|+|
T Consensus 237 ------------------------------------------------------------------MvG----------- 239 (501)
T COG3845 237 ------------------------------------------------------------------MVG----------- 239 (501)
T ss_pred ------------------------------------------------------------------hcC-----------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCC
Q 001108 640 YALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGH 719 (1156)
Q Consensus 640 ~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 719 (1156)
.
T Consensus 240 -------------------------------------------------------------------------------~ 240 (501)
T COG3845 240 -------------------------------------------------------------------------------R 240 (501)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred ccccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCC
Q 001108 720 SWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGG 799 (1156)
Q Consensus 720 ~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1156)
. +.. +
T Consensus 241 ~---------------v~~-------------------------------------~----------------------- 245 (501)
T COG3845 241 E---------------VVL-------------------------------------R----------------------- 245 (501)
T ss_pred c---------------ccc-------------------------------------c-----------------------
Confidence 0 000 0
Q ss_pred cccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccC
Q 001108 800 NVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLED 879 (1156)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~ 879 (1156)
. . . .... | .+..++++|++..-+.
T Consensus 246 ----------------~-------------------~--~-~~~~-----p-g~~vL~V~~L~v~~~~------------ 269 (501)
T COG3845 246 ----------------V-------------------V--K-PPST-----P-GEVVLEVEDLSVKDRR------------ 269 (501)
T ss_pred ----------------c-------------------c--c-CCCC-----C-CCeEEEEeeeEeecCC------------
Confidence 0 0 0 0000 0 0124666777644321
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC----Chh-cccceEEEeccCCC---
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK----KQE-TFARISGYCEQNDI--- 951 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~----~~~-~~~~~~gyv~q~~~--- 951 (1156)
....+++|||+|++||++||.|..|-|-+.|+.+|+|..+ +..|+|.++|.+. ... ..+.-+||||.+..
T Consensus 270 ~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~--~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~G 347 (501)
T COG3845 270 GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK--PASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHG 347 (501)
T ss_pred CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc--cCCceEEECCEeccccCCHHHHHhcCCccCChhhccCc
Confidence 1357999999999999999999999999999999999865 3459999999986 222 23346899999874
Q ss_pred CCCCCCHHHHHHHHHHhh----CCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001108 952 HSPFVTIYESLLFSAWLR----LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1027 (1156)
Q Consensus 952 ~~~~~Tv~e~l~~~~~lr----~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~ 1027 (1156)
+.+.+|+.||+.+...-+ ...-.+....+++..++++.++.....-. .| ...||||++||+-+||+|..+|+
T Consensus 348 lv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~---~~-a~~LSGGNqQK~IlaREl~~~p~ 423 (501)
T COG3845 348 LVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD---AP-ARSLSGGNQQKLILARELARRPD 423 (501)
T ss_pred cccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC---cc-hhhcCCcceehhhhhhhhccCCC
Confidence 467899999998765421 11134556778889999999988632211 11 46799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1028 illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
+|+..+||-|||..+.+.|.+.|.+.++.|+.|++++-+++ ++++.+||+.+|.+ |+++...+..
T Consensus 424 lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~ 488 (501)
T COG3845 424 LLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPE 488 (501)
T ss_pred EEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceecccccc
Confidence 99999999999999999999999999999999999999998 79999999999986 6888777654
No 42
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-51 Score=502.88 Aligned_cols=263 Identities=41% Similarity=0.757 Sum_probs=244.9
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC-eEEEEEEEc
Q 001108 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITIS 930 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~ 930 (1156)
.+..+.|+|+++..+.+.. ..+++|+|||++++|||++||||||||||||||++|+|+..++ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3457899999998865421 3478999999999999999999999999999999999998754 689999999
Q ss_pred CccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 931 GYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 931 g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
|++.....+++.+|||+|+|.++|.+||+|+|.|+|.+|.+...+.++++++|+++++.++|.+++|+.+|.++.+++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999888899999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
||||||+||.+|+.||.||||||||||||+.++..++++|++++++|+|||||+|||+.++++.||++++|.+ |+++|.
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 599999
Q ss_pred cCCCCcchhHHHHHHhCCCcccCCCCCCCccEEEEEeec
Q 001108 1091 GPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAA 1129 (1156)
Q Consensus 1091 g~~~~~~~~~~~~f~~~~g~~~~~~~~np~~~~l~~~~~ 1129 (1156)
|+. .++.+||+.+ |. +||+++||+||.+|+++.
T Consensus 253 G~~----~~~~~ff~~~-G~-~~P~~~Npadf~l~l~s~ 285 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL-GF-PCPELENPADFLLDLLSV 285 (613)
T ss_pred cCH----HHHHHHHHhC-CC-CCCCcCChHHHHHHHHcc
Confidence 995 6889999998 55 499999999999998874
No 43
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=9.4e-46 Score=457.80 Aligned_cols=270 Identities=32% Similarity=0.597 Sum_probs=232.8
Q ss_pred CCceeEEeceeeEEeccchh--------------hhcc--cccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhc
Q 001108 852 EPHSLTFDEVVYSVDMPEEM--------------KVQG--VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~--------------~~~~--~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~ 915 (1156)
.+..+.|.++.|+++..... +..+ ...+++.+|+|||+++++||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 35689999999998754310 0001 1234567999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc
Q 001108 916 GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995 (1156)
Q Consensus 916 g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~ 995 (1156)
|+..++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|.+.++.+...+.+++++.++++++.++|.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9876444689999999886543 345689999999999999999999998877755445556667789999999999999
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhc
Q 001108 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1075 (1156)
Q Consensus 996 ~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~ 1075 (1156)
.|+.+|....++||||||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99988876678999999999999999999999999999999999999999999999998889999999999987789999
Q ss_pred CeEEEEecCcEEEEecCCCCcchhHHHHHHhCCCcccCCCCCCCccEEEEEeec
Q 001108 1076 DELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAA 1129 (1156)
Q Consensus 1076 d~v~~l~~Gg~~~~~g~~~~~~~~~~~~f~~~~g~~~~~~~~np~~~~l~~~~~ 1129 (1156)
|++++|++ |+++|.|+. +++++||+++ |. .||+++|||||++|+++.
T Consensus 275 D~iilL~~-G~iv~~G~~----~~~~~~f~~~-G~-~~P~~~NpADf~ldv~~~ 321 (659)
T PLN03211 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESV-GF-SPSFPMNPADFLLDLANG 321 (659)
T ss_pred ceEEEecC-CcEEEECCH----HHHHHHHHHC-CC-CCCCCCCHHHHHHHHcCc
Confidence 99999985 699999985 6889999998 44 599999999999999874
No 44
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-45 Score=376.93 Aligned_cols=214 Identities=25% Similarity=0.368 Sum_probs=190.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++.+| ++..+|+|||++|++||+++|+|||||||||||+||.++.. +.+|+|.++|.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 6778888776 45789999999999999999999999999999999999887 56899999996543
Q ss_pred ----hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 936 ----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 936 ----~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
-...++.+|+|+|+..+||.+||.||+.++-..- ...++++.++...+.|+.+||.+.++.++ ..||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcH
Confidence 2346778999999999999999999999875432 24466777888899999999999999874 579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
|||||+|||||+.+|+++++|||||+|||+....|.+.+++++++|.|.||+||++.+ .-+.+||+++|++ |+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999986 6788999999985 7888888
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
++
T Consensus 219 ~p 220 (240)
T COG1126 219 PP 220 (240)
T ss_pred CH
Confidence 75
No 45
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=5.1e-46 Score=460.82 Aligned_cols=267 Identities=37% Similarity=0.637 Sum_probs=235.0
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC-eEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCH
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 958 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv 958 (1156)
++.+|+|||++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 567999999999999999999999999999999999987543 3579999999987666677889999999999999999
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001108 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037 (1156)
Q Consensus 959 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~-~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsg 1037 (1156)
+|||.|++.++.+.....+++++.++++++.++|.+++|+.+|.++ .++|||||||||+||+||+.+|++|||||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999998877666677778889999999999999999998753 568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCCcchhHHHHHHhCCCcccCCCCC
Q 001108 1038 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGY 1117 (1156)
Q Consensus 1038 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~~~~~~~~~~f~~~~g~~~~~~~~ 1117 (1156)
||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|.|+. +++.+||+++ |. .||++.
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~----~~~~~~f~~~-g~-~~p~~~ 269 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSP----DQAVPFFSDL-GH-PCPENY 269 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCH----HHHHHHHHHc-CC-CCCCCC
Confidence 9999999999999999888999999999998789999999999985 799999995 6789999998 44 699999
Q ss_pred CCccEEEEEeeccchhhc-----CCChHHHhccCHhHHHHh
Q 001108 1118 NPATWMLEVSAASQELAL-----GIDFTEHYKRSDLYRYKQ 1153 (1156)
Q Consensus 1118 np~~~~l~~~~~~~~~~~-----~~d~~~~~~~s~~~~~~~ 1153 (1156)
||+||++|+++...+... ..++.+.|++|+.+++.+
T Consensus 270 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 310 (617)
T TIGR00955 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDML 310 (617)
T ss_pred ChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHH
Confidence 999999999875432211 136777888887765543
No 46
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-44 Score=369.82 Aligned_cols=220 Identities=25% Similarity=0.422 Sum_probs=187.3
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC----cCccceEEEEcCCCCCCC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----FVPQRTAAYISQHDNHIG 239 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~----~~~~~~~~yv~Q~d~~~~ 239 (1156)
...+|+|||++|++||+++|+|||||||||||++|.|+..++ +|+|.++|.++.. ...|+.+|+|+|+.++||
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 356999999999999999999999999999999999999998 9999999976532 123678999999999999
Q ss_pred CCCHHHHHHHHhhh-cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 240 EMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
++||.||+..+... ++. ...+++..+..+|+.+||.+.+|.
T Consensus 91 HlTvleNv~lap~~v~~~----------------------------------~k~eA~~~A~~lL~~VGL~~ka~~---- 132 (240)
T COG1126 91 HLTVLENVTLAPVKVKKL----------------------------------SKAEAREKALELLEKVGLADKADA---- 132 (240)
T ss_pred cchHHHHHHhhhHHHcCC----------------------------------CHHHHHHHHHHHHHHcCchhhhhh----
Confidence 99999999987421 111 112234456778999999998885
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
++.+|||||||||+|||||+.+|+++++|||||+|||....++.+.+++++. .+ .+++.++|....+-+.+|||+.|
T Consensus 133 -yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eG-mTMivVTHEM~FAr~VadrviFm 209 (240)
T COG1126 133 -YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EG-MTMIIVTHEMGFAREVADRVIFM 209 (240)
T ss_pred -CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cC-CeEEEEechhHHHHHhhheEEEe
Confidence 4567999999999999999999999999999999999999999999999986 34 45555889999999999999999
Q ss_pred cCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHh
Q 001108 399 SDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE 435 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~ 435 (1156)
++|+++.+|+++++ |..|.+....+|+..
T Consensus 210 d~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 210 DQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred eCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 99999999999876 456766666777654
No 47
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=9.4e-44 Score=402.07 Aligned_cols=202 Identities=19% Similarity=0.233 Sum_probs=156.4
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..+.++|+.+.|+. +..++++++|.|.+++.+|+|||||+||||||+++.|... +..|.|.-.-+.
T Consensus 388 pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H~ 453 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSHN 453 (614)
T ss_pred CeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccccc
Confidence 35789999988862 2358999999999999999999999999999999999876 456776543221
Q ss_pred CChhcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 934 KKQETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 934 ~~~~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
.+++..|+- .+.-..++.|+++=. . ..+...+.+..++..+||..-.+... .+.||+|
T Consensus 454 --------~~~~y~Qh~~e~ldl~~s~le~~~~~-----~---~~~~~~e~~r~ilgrfgLtgd~q~~p----~~~LS~G 513 (614)
T KOG0927|consen 454 --------KLPRYNQHLAEQLDLDKSSLEFMMPK-----F---PDEKELEEMRSILGRFGLTGDAQVVP----MSQLSDG 513 (614)
T ss_pred --------cchhhhhhhHhhcCcchhHHHHHHHh-----c---cccchHHHHHHHHHHhCCCccccccc----hhhcccc
Confidence 223334432 222235666665411 1 11234566788999999985443321 4679999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||+||..|+.++..|.||+|||||+|||..+...+-+.|.+. ..+||+++||..+ |-..++++.+..+++...+.|
T Consensus 514 qr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G 589 (614)
T KOG0927|consen 514 QRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDG 589 (614)
T ss_pred cchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCc
Confidence 999999999999999999999999999999999999998865 4589999999875 788999999999999999998
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
..
T Consensus 590 ~i 591 (614)
T KOG0927|consen 590 DI 591 (614)
T ss_pred cH
Confidence 74
No 48
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-43 Score=378.83 Aligned_cols=219 Identities=23% Similarity=0.331 Sum_probs=193.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
+++++|+..+... ..+...+|+|||++|++||++||+|.||||||||++++.++.. |.+|.|.++|.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 5678887665421 1134679999999999999999999999999999999999887 57999999997653
Q ss_pred h------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
. ..+++.+|+++|++.++...||+||+.|+..+.. .++++.+++|.++++.+||.+..+.. +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 2 3467789999999999999999999999988764 56788999999999999999988887 45799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
|||||||+|||||+.+|+||++|||||+|||++.+.|+++|+++.++ |.||+++||+++. +-+.|||+.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999755 9999999999874 7789999999986 7999
Q ss_pred EecCCC
Q 001108 1089 YVGPLG 1094 (1156)
Q Consensus 1089 ~~g~~~ 1094 (1156)
..|+..
T Consensus 222 E~G~v~ 227 (339)
T COG1135 222 EEGTVS 227 (339)
T ss_pred EeccHH
Confidence 999853
No 49
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.8e-43 Score=362.36 Aligned_cols=231 Identities=26% Similarity=0.366 Sum_probs=199.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.+++++|+.++ +++.+++|||++|++||+++||||||+||||||++|.|... +.+|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcch
Confidence 57888888775 56789999999999999999999999999999999999887 5789999999886
Q ss_pred Ch------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-cccccCCCCCCC
Q 001108 935 KQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSG 1007 (1156)
Q Consensus 935 ~~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~ 1007 (1156)
.+ ...++++|+++|+-.+|..+||+||+.|..+ .....+++..++.+..-|+.+||.+. .+.. +++
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 43 2356779999999999999999999999743 34456777788888889999999887 5655 467
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
|||||+||++|||||+.+|+|||+||||+||||.++..+-++|+++.+. |.|+|++|||.+ +++..||++++|.+ |+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gk 223 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GK 223 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999876 999999999997 58999999999996 79
Q ss_pred EEEecCCC----CcchhHHHHHHhCCC
Q 001108 1087 EIYVGPLG----RHSCHLISYFEAIPG 1109 (1156)
Q Consensus 1087 ~~~~g~~~----~~~~~~~~~f~~~~g 1109 (1156)
++..|+.. ....-+.+||....+
T Consensus 224 v~~~Gt~~el~~sd~P~v~qf~~G~~~ 250 (263)
T COG1127 224 VIAEGTPEELLASDDPWVRQFFNGIRD 250 (263)
T ss_pred EEEeCCHHHHHhCCCHHHHHHhcCCCC
Confidence 99999964 122355667776543
No 50
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.6e-43 Score=392.06 Aligned_cols=214 Identities=30% Similarity=0.442 Sum_probs=189.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++..+. .++.+|+||||+|++|+++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 5 i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~ 70 (293)
T COG1131 5 IEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVV 70 (293)
T ss_pred eeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCc
Confidence 56677776663 14689999999999999999999999999999999999887 46899999998765
Q ss_pred h--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
. ...++.+||++|++.+++.+||+|+|.|.+.++.... ...+++++++++.++|.+..++. +++||+|||
T Consensus 71 ~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~k 142 (293)
T COG1131 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGMK 142 (293)
T ss_pred cCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHH
Confidence 4 4567789999999999999999999999999986542 34567899999999999855544 457999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+||+||+++|++|||||||+||||.++..++++|++++++| +||+++||+++ ++...||++++|++ |++++.|+
T Consensus 143 qrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~ 220 (293)
T COG1131 143 QRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGT 220 (293)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999887 89999999997 68888999999986 79999997
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 221 ~ 221 (293)
T COG1131 221 P 221 (293)
T ss_pred H
Confidence 4
No 51
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-43 Score=374.21 Aligned_cols=224 Identities=29% Similarity=0.383 Sum_probs=194.6
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDN 236 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~------~~~~~yv~Q~d~ 236 (1156)
...++|+|||++|++|++.+|+|+||||||||++++.++..|+ +|+|.++|.++..... |+.||+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3467999999999999999999999999999999999999999 9999999988766542 478999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccc
Q 001108 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1156)
++...||.||++|+.++.+... .+.+.++.++|+.+||++.+|.
T Consensus 94 LLssrTV~~NvA~PLeiag~~k----------------------------------~ei~~RV~elLelVgL~dk~~~-- 137 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVPK----------------------------------AEIKQRVAELLELVGLSDKADR-- 137 (339)
T ss_pred ccccchHHhhhhhhHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcc--
Confidence 9999999999999988765321 1234578889999999988875
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
++.+|||||||||+|||||+.+|+||++|||||+|||.|+..|.+.|+++-++. +.+|+.++|-+.-+-+.||||.
T Consensus 138 ---yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l-glTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 138 ---YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred ---CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHhhhhe
Confidence 455799999999999999999999999999999999999999999999987754 5556668889999999999999
Q ss_pred EEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhc
Q 001108 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVT 437 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~ 437 (1156)
+|++|+++++|+..++ |..|.+.-.-.|+.+..
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETL 246 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhc
Confidence 9999999999999987 45566665666665544
No 52
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-43 Score=362.09 Aligned_cols=210 Identities=27% Similarity=0.397 Sum_probs=185.6
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCCC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGE 240 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~ 240 (1156)
.+.+++|+|++|++|++++++|||||||||+|++|.++++|+ +|+|.+||.++.+.. .|+.+|||-|.-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 345999999999999999999999999999999999999999 999999999987754 36899999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1156)
+||.|||.+--.+++... ++.+.+++++|+.+||+.. ...+++
T Consensus 90 ~Tv~eNIa~VP~L~~w~k----------------------------------~~i~~r~~ELl~lvgL~p~---~~~~Ry 132 (309)
T COG1125 90 LTVAENIATVPKLLGWDK----------------------------------ERIKKRADELLDLVGLDPS---EYADRY 132 (309)
T ss_pred ccHHHHHHhhhhhcCCCH----------------------------------HHHHHHHHHHHHHhCCCHH---HHhhcC
Confidence 999999998877765432 1234568899999999752 134577
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
+..|||||+|||.+||||+.+|+|++||||+++|||-++.++.+.++++-+.. +.+||.++|+..|++.++|+|++|++
T Consensus 133 P~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l-~kTivfVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 133 PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL-GKTIVFVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred chhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHhhhceEEEecC
Confidence 88999999999999999999999999999999999999999999998876544 45566689999999999999999999
Q ss_pred CeEEEEcChhHHHH
Q 001108 401 GQIVYQGPRELVLE 414 (1156)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1156)
|+++.++++++++.
T Consensus 212 G~i~Q~~~P~~il~ 225 (309)
T COG1125 212 GEIVQYDTPDEILA 225 (309)
T ss_pred CeEEEeCCHHHHHh
Confidence 99999999999864
No 53
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-42 Score=369.86 Aligned_cols=216 Identities=26% Similarity=0.429 Sum_probs=186.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|+ ++ ++|+||||+|++|+++||+||||||||||+++|.|..+ +.+|+|.+.|.+.
T Consensus 4 ~i~v~nl~v~y~------------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG------------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC------------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 478999999985 22 59999999999999999999999999999999999776 5689999999887
Q ss_pred ChhcccceEEEeccCCCC--CCCCCHHHHHHHHHHhhCC--CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQETFARISGYCEQNDIH--SPFVTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~--~~~~Tv~e~l~~~~~lr~~--~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.....+..+|||||...+ ..-+||+|-+..+..-+.. ...+ ++.++.++++|+.+|+.+++++.+| +|||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 654445679999996533 2347999999887443321 1222 3346789999999999999999865 5999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
||+|||.|||||+.+|++|+|||||+|+|+.++..++++|+++.++|+||++++||++ .+.++||+++.|+ +++++.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~ 219 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIAS 219 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEec
Confidence 9999999999999999999999999999999999999999999988999999999998 4899999999997 589999
Q ss_pred cCCC
Q 001108 1091 GPLG 1094 (1156)
Q Consensus 1091 g~~~ 1094 (1156)
|+..
T Consensus 220 G~~~ 223 (254)
T COG1121 220 GPPE 223 (254)
T ss_pred cChh
Confidence 9875
No 54
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-42 Score=364.79 Aligned_cols=204 Identities=25% Similarity=0.371 Sum_probs=181.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.+.++++++++. ...+|+|||++|.+||+++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 367788887774 3679999999999999999999999999999999999987 5689999999887
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.. ....+|||+|++.++|.+||+||+.|+...+. .+.+++++.+.++++.+||.+..++. +.+|||||||
T Consensus 68 ~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 TG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred CC--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 32 34568999999999999999999999987654 34556677899999999999999987 4579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
||+|||||+.+|+||+||||+++||+.++..+++.|.++.+ +++|||++|||.+ |...++|||++|.++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999864 5899999999987 677889999999875
No 55
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3e-42 Score=363.97 Aligned_cols=208 Identities=27% Similarity=0.407 Sum_probs=175.9
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+.+||+-.|.... ....+|++|||+|++||++||||||||||||||++|.|... +.+|.|.++|.+...
T Consensus 3 ~~~~v~k~y~~~~---------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~~ 71 (226)
T COG1136 3 ELKNVSKIYGLGG---------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLTK 71 (226)
T ss_pred EEeeeEEEeccCC---------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcCc
Confidence 4567765554321 22579999999999999999999999999999999999887 468999999976542
Q ss_pred ------h-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccc-cccCCCCCCCC
Q 001108 937 ------E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-SLVGLPGVSGL 1008 (1156)
Q Consensus 937 ------~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-~~~~~~~~~~L 1008 (1156)
. .+++.+|||+|+..+.|.+||.||+.+...+.... ....++.++++++.++|.+..+ .. +.+|
T Consensus 72 l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eL 143 (226)
T COG1136 72 LSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKKK-----PSEL 143 (226)
T ss_pred CCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccCC-----chhc
Confidence 1 23457999999999999999999999887665332 2255677889999999987665 44 4579
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
||||||||+|||||+.+|+|||.||||.+||+++.+.|+++++++.++ |+|||++|||+ ++...|||++.|++|+
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCe
Confidence 999999999999999999999999999999999999999999999765 99999999997 4788999999999864
No 56
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.6e-42 Score=373.13 Aligned_cols=218 Identities=27% Similarity=0.407 Sum_probs=190.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++.+|+++.|+ ++.+|+||||+|++|++++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 367899999885 4679999999999999999999999999999999999776 5689999999886
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCC-CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ..+++.+||+||.....+.+||+|.+.++..-+... ....++.++.++++|+.+++.+++++.+ ..|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 54 457789999999998888999999999875432211 1123344557999999999999999875 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||+.|||||+++|+||+||||||+||...+..|+++++++. ++|+|||+++||++. ...+||++++|++ |+++.
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEe
Confidence 99999999999999999999999999999999999999999998 459999999999986 7899999999986 79999
Q ss_pred ecCCC
Q 001108 1090 VGPLG 1094 (1156)
Q Consensus 1090 ~g~~~ 1094 (1156)
.|++.
T Consensus 220 ~G~p~ 224 (258)
T COG1120 220 QGTPE 224 (258)
T ss_pred ecCcc
Confidence 99864
No 57
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-42 Score=358.86 Aligned_cols=213 Identities=26% Similarity=0.365 Sum_probs=190.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++|+||+..|. ++.+++|+|++|++||++.++|||||||||+|++|.++.. +.+|+|.|+|.++.
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 57888887663 4679999999999999999999999999999999999887 56999999999875
Q ss_pred h---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc--ccccccCCCCCCCCCH
Q 001108 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~~~~~~~~~LSg 1010 (1156)
. ...+|.+|||-|.-.++|++||.||+.+--.+. ..++++.+++++|+|+.++|.+ +.++. +.+|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 457889999999999999999999999876654 3456788899999999999986 67776 457999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
||+|||.+||||+++|+||+||||+++|||.++..+++.++++.++ |+|||++|||.+ +.+.++||+.+|+. |+++.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~-G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDA-GEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecC-CeEEE
Confidence 9999999999999999999999999999999999999999998755 999999999997 78999999999985 68887
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.+++
T Consensus 217 ~~~P 220 (309)
T COG1125 217 YDTP 220 (309)
T ss_pred eCCH
Confidence 7764
No 58
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-42 Score=382.75 Aligned_cols=216 Identities=31% Similarity=0.453 Sum_probs=193.5
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc-ceEEEEcCCCCCCCCCCHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 245 (1156)
+|+|+|++|++||+++|+|||||||||||++|||+.+|+ +|+|.++|.++++..|+ |.+|+|+|+..++|+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999999 99999999999998775 88999999999999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
||.|+.+.++... .+.+.+++++.+.|+|++..|.. +++||
T Consensus 95 Niaf~Lk~~~~~k----------------------------------~ei~~rV~eva~~L~l~~lL~r~-----P~~LS 135 (338)
T COG3839 95 NIAFGLKLRGVPK----------------------------------AEIDKRVKEVAKLLGLEHLLNRK-----PLQLS 135 (338)
T ss_pred HhhhhhhhCCCch----------------------------------HHHHHHHHHHHHHcCChhHHhcC-----cccCC
Confidence 9999998775321 12345678899999999988754 56799
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1156)
|||||||+|||||+.+|++++||||+|.||...+..+...|+++.+ .-++++|.++|+..|+..++|+|++|++|++..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~-~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE-RLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHH-hcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999999999999998654 456667778999999999999999999999999
Q ss_pred EcChhHHHHHHHhcCCCCCCCCChHHHH
Q 001108 406 QGPRELVLEFFASMGFRCPKRKGVADFL 433 (1156)
Q Consensus 406 ~G~~~~~~~~f~~~G~~~p~~~~~ad~l 433 (1156)
.|++.++ |..|.+.-+|.|+
T Consensus 215 ~g~p~el--------y~~P~n~fVA~Fi 234 (338)
T COG3839 215 VGTPLEL--------YERPANLFVAGFI 234 (338)
T ss_pred cCChHHH--------hhCccchhhhhhc
Confidence 9999998 4567777777775
No 59
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=348.88 Aligned_cols=201 Identities=28% Similarity=0.366 Sum_probs=184.6
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh--hcccceEEEeccCCCCCCCCCHH
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVTIY 959 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~~~Tv~ 959 (1156)
.+++||||+++.||++||+|+|||||||+|++|++... |.+|.|.++|.+... ...++.+|.++.+..++..||++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 48999999999999999999999999999999999877 578999999998643 45678899999888999999999
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 001108 960 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039 (1156)
Q Consensus 960 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD 1039 (1156)
|||.|.+.+.. ....+.+++++++.+.++|.++.|+.+| ++|.|+||||+|||||+++|++++|||||||||
T Consensus 94 Enl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 99999998873 4556778899999999999999999976 599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1040 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1040 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
..+.+.+.+.++++.+.|++||++||.++ ++...||++++|++ |++++.|...
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~ 218 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIE 218 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHH
Confidence 99999999999999988999999999986 78889999999997 6999999853
No 60
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-42 Score=407.66 Aligned_cols=255 Identities=22% Similarity=0.390 Sum_probs=209.2
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCC---CcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDL---PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNY 154 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 154 (1156)
..+..-..+|+++.+|..|. +.. -|... .+..|+|+||+|.|..
T Consensus 431 lmkgvGAs~rvFel~dr~P~-----i~~----~G~~~p~~~~G~IeF~~VsFaYP~------------------------ 477 (716)
T KOG0058|consen 431 LMKGVGASERVFELMDRKPR-----IPL----TGTLAPDHLQGVIEFEDVSFAYPT------------------------ 477 (716)
T ss_pred HHHhcchHHHHHHHhccCCC-----CCC----CCccccccccceEEEEEeeeecCC------------------------
Confidence 34555667888888887765 221 14333 4678999999999843
Q ss_pred hhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEE
Q 001108 155 LRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYI 231 (1156)
Q Consensus 155 ~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv 231 (1156)
+ +..+||+|+||+|+||+.|||+||||+||||+.++|..+++|+ +|+|++||+|+.++++ ++.+|+|
T Consensus 478 ------R-p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V 547 (716)
T KOG0058|consen 478 ------R-PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLV 547 (716)
T ss_pred ------C-CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeee
Confidence 2 3467999999999999999999999999999999999999999 9999999999988776 5889999
Q ss_pred cCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccc
Q 001108 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1156)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1156)
.|+|.+|. .||+|||.|+.. ....+.+..+++....+ +. +.+++++
T Consensus 548 ~QEPvLFs-~sI~eNI~YG~~----~~t~e~i~~AAk~ANah--------------------------~F---I~~~p~g 593 (716)
T KOG0058|consen 548 GQEPVLFS-GSIRENIAYGLD----NATDEEIEAAAKMANAH--------------------------EF---ITNFPDG 593 (716)
T ss_pred eccceeec-ccHHHHHhcCCC----CCCHHHHHHHHHHhChH--------------------------HH---HHhCccc
Confidence 99998875 699999999874 22333444444333221 11 4579999
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 001108 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1156)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1156)
+||.||+++. .||||||||++|||||+++|+||||||.||+||+.+...+.+.|.+..+ ++|+++ |. |+..+.+.
T Consensus 594 Y~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlv-IA-HRLSTV~~ 668 (716)
T KOG0058|consen 594 YNTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLV-IA-HRLSTVRH 668 (716)
T ss_pred cccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEE-Ee-hhhhHhhh
Confidence 9999999887 5999999999999999999999999999999999999999999988654 355554 44 45788999
Q ss_pred cCeEEEEcCCeEEEEcChhHHHH
Q 001108 392 FDDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
+|+|+++++|++++.|+++|+++
T Consensus 669 Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 669 ADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred ccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999999999875
No 61
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8e-42 Score=383.34 Aligned_cols=222 Identities=30% Similarity=0.442 Sum_probs=196.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1156)
..+|+|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.++|.+++...+ +|.+++|+|+-.+||+|||
T Consensus 18 ~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV 94 (352)
T COG3842 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTV 94 (352)
T ss_pred eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCcH
Confidence 45999999999999999999999999999999999999999 9999999999998877 4889999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.|+.+.++...+ .+.+.+++++|+.++|++.++. .+.+
T Consensus 95 ~~NVafGLk~~~~~~~---------------------------------~~i~~rv~e~L~lV~L~~~~~R-----~p~q 136 (352)
T COG3842 95 EENVAFGLKVRKKLKK---------------------------------AEIKARVEEALELVGLEGFADR-----KPHQ 136 (352)
T ss_pred HHHhhhhhhhcCCCCH---------------------------------HHHHHHHHHHHHHcCchhhhhh-----Chhh
Confidence 9999999874431110 1233568889999999987664 4557
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+|||||+.+|++||||||.|+||..-+.++...|+++.+.. +.+.|.++|+..|++.++|+|++|++|+|
T Consensus 137 LSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~I 215 (352)
T COG3842 137 LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGRI 215 (352)
T ss_pred hChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCce
Confidence 99999999999999999999999999999999999999999999987755 56666689999999999999999999999
Q ss_pred EEEcChhHHHHHHHhcCCCCCCCCChHHHHHhh
Q 001108 404 VYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436 (1156)
Q Consensus 404 v~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v 436 (1156)
...|+++++ |..|...-+|+|+-+.
T Consensus 216 ~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 216 EQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 999999998 5678888889988654
No 62
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-42 Score=355.01 Aligned_cols=220 Identities=26% Similarity=0.334 Sum_probs=188.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++-.|+ +++++|+|||++|++||++||+|+|||||||||++|.|... +..|+|.++|.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 478888887774 45789999999999999999999999999999999999765 5689999999764
Q ss_pred Ch------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC-----CCCChHHHHHHHHHHHHHcCCCcccccccCCC
Q 001108 935 KQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-----PEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003 (1156)
Q Consensus 935 ~~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~ 1003 (1156)
.. ..+++.+||++|++.+.+.+||.+|++.+..-+.+ -....++.+..+-++|+.+|+.+.+-...
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh---
Confidence 32 34567899999999999999999999876432211 12233455667788999999998887764
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+.|||||+|||+|||||+.+|+||+.|||+++|||.+++.||+.|+++.+ +|.|||++.|+.++ ..++|||++-|+
T Consensus 146 --~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 146 --STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred --ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 46999999999999999999999999999999999999999999999975 59999999999986 778999999998
Q ss_pred cCcEEEEecCCCC
Q 001108 1083 RGGQEIYVGPLGR 1095 (1156)
Q Consensus 1083 ~Gg~~~~~g~~~~ 1095 (1156)
. |+++|.||...
T Consensus 223 ~-G~ivfDg~~~e 234 (258)
T COG3638 223 A-GRIVFDGPASE 234 (258)
T ss_pred C-CcEEEeCChhh
Confidence 6 79999999753
No 63
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.9e-42 Score=369.41 Aligned_cols=210 Identities=33% Similarity=0.454 Sum_probs=180.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1156)
++||+|+||++++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.++.. .+.+|||||.....+.+
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~ 91 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL 91 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCc
Confidence 45999999999999999999999999999999999999998 9999999999887665 37899999998888899
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+|-+.++..-.. + . .. ...++....++..|+.+|+.+.++..+.
T Consensus 92 tV~d~V~~GR~p~~-~-~----------------~~------------~~~~~D~~~v~~aL~~~~~~~la~r~~~---- 137 (258)
T COG1120 92 TVYELVLLGRYPHL-G-L----------------FG------------RPSKEDEEIVEEALELLGLEHLADRPVD---- 137 (258)
T ss_pred EEeehHhhcCCccc-c-c----------------cc------------CCCHhHHHHHHHHHHHhCcHHHhcCccc----
Confidence 99999998853210 0 0 00 0011112357888999999999987665
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
.|||||||||.|||||+.+|++|+||||||+||...+.++++.++++.+..+ .+||.+.|+...+.++||++++|++|
T Consensus 138 -~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~-~tvv~vlHDlN~A~ryad~~i~lk~G 215 (258)
T COG1120 138 -ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG-LTVVMVLHDLNLAARYADHLILLKDG 215 (258)
T ss_pred -ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEECC
Confidence 5999999999999999999999999999999999999999999999987544 45555778999999999999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
+++.+|++++++
T Consensus 216 ~i~a~G~p~evl 227 (258)
T COG1120 216 KIVAQGTPEEVL 227 (258)
T ss_pred eEEeecCcchhc
Confidence 999999998875
No 64
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-41 Score=355.22 Aligned_cols=194 Identities=27% Similarity=0.411 Sum_probs=171.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
..+|+|+|++|.+||+++|+|||||||||||++|+|+..|+ +|+|.++|.++. .+...++||+|++.++|-+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 45999999999999999999999999999999999999998 999999999873 4567899999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+....+... .+...+++.+|+.+||....| +++++|
T Consensus 91 ~NV~l~l~~~~~~~----------------------------------~e~~~~a~~~L~~VgL~~~~~-----~~P~qL 131 (248)
T COG1116 91 DNVALGLELRGKSK----------------------------------AEARERAKELLELVGLAGFED-----KYPHQL 131 (248)
T ss_pred hhheehhhccccch----------------------------------HhHHHHHHHHHHHcCCcchhh-----cCcccc
Confidence 99999987764211 112235778899999998776 456789
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC--Ce
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQ 402 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~--G~ 402 (1156)
||||||||+|||||+.+|++|+||||+++||+.|+..+.+.|.++.+..+ .+|+.++|+-.|+..++|||++|++ |+
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~-~TvllVTHdi~EAv~LsdRivvl~~~P~~ 210 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETR-KTVLLVTHDVDEAVYLADRVVVLSNRPGR 210 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhC-CEEEEEeCCHHHHHhhhCEEEEecCCCcc
Confidence 99999999999999999999999999999999999999999998887554 5556689999999999999999998 44
Q ss_pred E
Q 001108 403 I 403 (1156)
Q Consensus 403 i 403 (1156)
|
T Consensus 211 i 211 (248)
T COG1116 211 I 211 (248)
T ss_pred e
Confidence 5
No 65
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-41 Score=362.82 Aligned_cols=205 Identities=29% Similarity=0.448 Sum_probs=185.6
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc---cCCh-hcccceEEEeccCCCCCC
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQ-ETFARISGYCEQNDIHSP 954 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~gyv~q~~~~~~ 954 (1156)
+...+++|||++|+.||++||+|||||||||||++|+|+.+ +..|.|.++|. +..+ ....|.+|||+|+..+++
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 34578999999999999999999999999999999999987 56899999998 5544 345678999999999999
Q ss_pred CCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001108 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034 (1156)
Q Consensus 955 ~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEP 1034 (1156)
.|||.+|+.|+...+ ...++..+.+.+++++|+.++|+++.+.+ +.+|||||||||++||||+..|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998776 33455677888999999999999999987 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1035 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1035 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
+++||+.-+..+.+.|+++.+. |.|+|++|||+. ++.+.+|||++|++ |++...|+.
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p 222 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPP 222 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCH
Confidence 9999999999999999999876 999999999997 79999999999987 688888875
No 66
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.1e-41 Score=347.95 Aligned_cols=209 Identities=26% Similarity=0.364 Sum_probs=179.1
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1156)
+.||+|||++|++||+++|||||||||||||++|.|++.|+ +|+|.++|.++.+... ++++|+++|+-.+|
T Consensus 21 ~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALF 97 (263)
T COG1127 21 RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALF 97 (263)
T ss_pred EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccc
Confidence 45999999999999999999999999999999999999999 9999999999876543 46799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
..+||+||+.|..+-...-. ....+..+..-|+..||+.. +++
T Consensus 98 ssltV~eNVafplre~~~lp---------------------------------~~~i~~lv~~KL~~VGL~~~----~~~ 140 (263)
T COG1127 98 SSLTVFENVAFPLREHTKLP---------------------------------ESLIRELVLMKLELVGLRGA----AAD 140 (263)
T ss_pred cccchhHhhheehHhhccCC---------------------------------HHHHHHHHHHHHHhcCCChh----hhh
Confidence 99999999999875432100 01112234445778899754 345
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
.++.+||||++||++||||++.+|+++|+||||+||||.++..+.+.++++.... +.+++.++|+.++++..+|+|++|
T Consensus 141 ~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~l-g~T~i~VTHDl~s~~~i~Drv~~L 219 (263)
T COG1127 141 LYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL-GLTVIMVTHDLDSLLTIADRVAVL 219 (263)
T ss_pred hCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhh-CCEEEEEECChHHHHhhhceEEEE
Confidence 6788899999999999999999999999999999999999999999999887654 455556899999999999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001108 399 SDGQIVYQGPRELVLE 414 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1156)
.+|+|+++|+++++.+
T Consensus 220 ~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 220 ADGKVIAEGTPEELLA 235 (263)
T ss_pred eCCEEEEeCCHHHHHh
Confidence 9999999999999864
No 67
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9e-41 Score=375.73 Aligned_cols=212 Identities=34% Similarity=0.488 Sum_probs=184.5
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc--CccceEEEEcCCCCCCCCC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~l 241 (1156)
.+.+|+||||++++|++++|+||||||||||+++|+|++.|+ +|+|.++|.+.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 357999999999999999999999999999999999999998 99999999887652 3457899999999999999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+|||.|.+++.+.... .....++++++.+||++..++ .+
T Consensus 94 T~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~~~-----~~ 134 (293)
T COG1131 94 TVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKANK-----KV 134 (293)
T ss_pred cHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhhCc-----ch
Confidence 999999999988764210 012357889999999984444 45
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
++||+||||||+||.||+++|++|||||||+|||+.++.++++.|++++.. ++++|+..+|...++..+||+|++|++|
T Consensus 135 ~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 579999999999999999999999999999999999999999999998864 4355555788889999999999999999
Q ss_pred eEEEEcChhHHHHHHHh
Q 001108 402 QIVYQGPRELVLEFFAS 418 (1156)
Q Consensus 402 ~iv~~G~~~~~~~~f~~ 418 (1156)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999998776544
No 68
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-41 Score=360.61 Aligned_cols=223 Identities=29% Similarity=0.443 Sum_probs=188.4
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCc---cCCCcCc-cceEEEEcCCCCCCC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH---DMDEFVP-QRTAAYISQHDNHIG 239 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~---~~~~~~~-~~~~~yv~Q~d~~~~ 239 (1156)
...+++|||+.|+.||+++|+|||||||||||++|||+..|+ +|.|.+||. +.+.... .|.+|||+|+..+|+
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 345899999999999999999999999999999999999999 999999999 6555333 488999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
+|||.+||+|+.+++.... . ..+.+.+++++|+.+.|++.++ +
T Consensus 91 HmtVa~NIAFGl~~~~~~p-----~---------------------------~~~~r~rv~elL~lvqL~~la~-----r 133 (345)
T COG1118 91 HMTVADNIAFGLKVRKERP-----S---------------------------EAEIRARVEELLRLVQLEGLAD-----R 133 (345)
T ss_pred cchHHhhhhhcccccccCC-----C---------------------------hhhHHHHHHHHHHHhcccchhh-----c
Confidence 9999999999997762110 0 0123456788899999987655 6
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
++.+|||||||||++||||+..|++|+||||+++||...+..+-+.|+++.... +.+.+.++|+..|++++||+|++|+
T Consensus 134 yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~-~~ttvfVTHD~eea~~ladrvvvl~ 212 (345)
T COG1118 134 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRL-GVTTVFVTHDQEEALELADRVVVLN 212 (345)
T ss_pred CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhh-CceEEEEeCCHHHHHhhcceEEEec
Confidence 677899999999999999999999999999999999999999999999876543 4555568999999999999999999
Q ss_pred CCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHh
Q 001108 400 DGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE 435 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~ 435 (1156)
+|+|...||++++. ..|...-+..|+-+
T Consensus 213 ~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G~ 240 (345)
T COG1118 213 QGRIEQVGPPDEVY--------DHPASRFVARFLGE 240 (345)
T ss_pred CCeeeeeCCHHHHh--------cCCCccceeccccc
Confidence 99999999999984 34555555555543
No 69
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=3.5e-41 Score=335.94 Aligned_cols=213 Identities=25% Similarity=0.327 Sum_probs=184.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
+.|+||+..|+. ...+|+||||.|++||++-|+|||||||||||++|.+... +..|.|.++|+++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 578888877753 3569999999999999999999999999999999999766 56899999999865
Q ss_pred h------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
. ...+|++|+|+|+..+.+..||+||+.|...... .+..+.+++|.++|+.+||.+..+.. +..||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 3 2357889999999999999999999999877664 34567788899999999999888776 45799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
||||||++||||++.+|++|+.||||.+|||..+..||+++.++.+.|.|||+.|||.++ +...-.+++.|.+ |+++.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~~-Grl~~ 217 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALED-GRLVR 217 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEeC-CEEEe
Confidence 999999999999999999999999999999999999999999999999999999999653 4444468888886 67776
Q ss_pred ecC
Q 001108 1090 VGP 1092 (1156)
Q Consensus 1090 ~g~ 1092 (1156)
...
T Consensus 218 d~~ 220 (223)
T COG2884 218 DES 220 (223)
T ss_pred ccc
Confidence 543
No 70
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.8e-41 Score=372.66 Aligned_cols=214 Identities=28% Similarity=0.399 Sum_probs=192.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++..|. +..+|+|||++|+.||+++|+|||||||||||++|+|+.. +.+|+|.|+|.+.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 467888887763 2228999999999999999999999999999999999987 5789999999987
Q ss_pred Ch-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
+. ...+|.+++|+|+..+||.|||+||+.|+..++. .++++.+++|+++.+.|+|.++.++. +.+||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 66 3456889999999999999999999999987763 45677889999999999999999987 457999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+++|++++||||.|+||++.+..+...|+++.++ |.|+|.+|||.. |.+.++|++.+|+ +|++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999998755 899999999974 7889999999998 579999987
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
+
T Consensus 218 p 218 (338)
T COG3839 218 P 218 (338)
T ss_pred h
Confidence 5
No 71
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4e-40 Score=374.07 Aligned_cols=215 Identities=27% Similarity=0.405 Sum_probs=187.9
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++++|++..++ ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 6 ~~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEe
Confidence 3588999988874 3569999999999999999999999999999999999876 568999999988
Q ss_pred CCh--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 934 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 934 ~~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
... ...++.+|||+|++.+++.+||+||+.|.+.++. .+..+..+.++++++.++|.+..++.+ ++||+|
T Consensus 71 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (306)
T PRK13537 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGG 142 (306)
T ss_pred cccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHH
Confidence 643 2345779999999999999999999998776542 233444567889999999988877764 469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||||++||+||+++|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 143 ~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g 220 (306)
T PRK13537 143 MKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEG 220 (306)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999878999999999987 57889999999986 6999999
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
+.
T Consensus 221 ~~ 222 (306)
T PRK13537 221 AP 222 (306)
T ss_pred CH
Confidence 75
No 72
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-41 Score=338.98 Aligned_cols=221 Identities=26% Similarity=0.395 Sum_probs=179.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCcC-----ccceEEEEcCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNH 237 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~nG~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1156)
+.+|+|||+.|+++++||++|||||||||||++|.+..+ |..+++|+|.++|+++.+.. .|+++|.|+|.++.
T Consensus 20 ~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnP 99 (253)
T COG1117 20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNP 99 (253)
T ss_pred hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCC
Confidence 349999999999999999999999999999999998865 34688999999999976542 36899999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-cccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMV 316 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~v 316 (1156)
|| +|++||+.|+.+++|... +.+. .+++..|+.-+|.+ ..|. .
T Consensus 100 Fp-~SIydNVayG~r~~g~~~--~~ld--------------------------------eiVe~sLk~AaLWdEVKDr-L 143 (253)
T COG1117 100 FP-MSIYDNVAYGLRLHGIKD--KELD--------------------------------EIVESSLKKAALWDEVKDR-L 143 (253)
T ss_pred CC-chHHHHHHHhHHhhccch--HHHH--------------------------------HHHHHHHHHhHhHHHhHHH-h
Confidence 99 999999999999887532 1111 22333344444432 1221 1
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
. +...+|||||+||++|||+|+-+|+|||||||||+|||.++..|-+.+.++.+ .-+|+.++|.+.++.+..|+..
T Consensus 144 ~-~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~ta 219 (253)
T COG1117 144 H-KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDYTA 219 (253)
T ss_pred h-CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhhh
Confidence 1 22347999999999999999999999999999999999999999999998752 4455558899999999999999
Q ss_pred EEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHH
Q 001108 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 433 (1156)
.+..|++|++|+.+++ |..|..+...||+
T Consensus 220 Ff~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 220 FFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 9999999999999987 4567776666665
No 73
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-40 Score=353.46 Aligned_cols=208 Identities=27% Similarity=0.443 Sum_probs=175.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCC--CCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD--NHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d--~~~~~lTV 243 (1156)
++|+|||+.+++|++++|+||||||||||+|+|+|++.|. +|+|.++|.+......+..||||||.. .+-.-+||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 3999999999999999999999999999999999999998 999999999887766667899999953 33344799
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+|.+..+..-+. + ..... ..+.+..+++.|+.+|+.+.+|..+|+
T Consensus 95 ~d~V~~g~~~~~-g----~~~~~-------------------------~~~d~~~v~~aL~~Vgm~~~~~r~i~~----- 139 (254)
T COG1121 95 KDVVLLGRYGKK-G----WFRRL-------------------------NKKDKEKVDEALERVGMEDLRDRQIGE----- 139 (254)
T ss_pred HHHHHccCcccc-c----ccccc-------------------------cHHHHHHHHHHHHHcCchhhhCCcccc-----
Confidence 999998742211 0 00000 111234678899999999999988885
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||+|||-|||||+++|++|+|||||+|+|+.++..|++.|+++.+. +.+|+.++|+...+.++||+|+.|+. ++
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln~-~~ 216 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLNR-HL 216 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEcC-ee
Confidence 9999999999999999999999999999999999999999999998764 55566689999999999999999976 68
Q ss_pred EEEcChhHHHH
Q 001108 404 VYQGPRELVLE 414 (1156)
Q Consensus 404 v~~G~~~~~~~ 414 (1156)
++.|+++++.+
T Consensus 217 ~~~G~~~~~~~ 227 (254)
T COG1121 217 IASGPPEEVLT 227 (254)
T ss_pred EeccChhhccC
Confidence 89999988753
No 74
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-40 Score=341.10 Aligned_cols=215 Identities=26% Similarity=0.387 Sum_probs=180.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1156)
+++|+|||+.|++|||++|+|||||||||||++|.|..+|+ +|+|.+||.++..... ++.+||++|+..+.
T Consensus 17 ~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv 93 (258)
T COG3638 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLV 93 (258)
T ss_pred ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCcc
Confidence 45999999999999999999999999999999999999998 9999999988765542 46899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||.+|+..+..-+. +.+.. -.++. .++.+..+-..|+.+|+.+.+.+..+
T Consensus 94 ~r~sv~~NVl~grl~~~--s~~~s---------lfglf---------------sk~dk~~Al~aLervgi~~~A~qra~- 146 (258)
T COG3638 94 PRLSVLENVLLGRLGYT--STWRS---------LFGLF---------------SKEDKAQALDALERVGILDKAYQRAS- 146 (258)
T ss_pred cccHHHHHHHhhhcccc--hHHHH---------HhCCC---------------CHHHHHHHHHHHHHcCcHHHHHHHhc-
Confidence 99999999998763321 11110 11111 11223345567899999998887766
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
.|||||+|||+|||||+.+|++++-|||+++|||.++.++|+.|+++....+.|+|+. .|...-+.++||||+-|
T Consensus 147 ----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~n-LH~vdlA~~Y~~Riigl 221 (258)
T COG3638 147 ----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVN-LHQVDLAKKYADRIIGL 221 (258)
T ss_pred ----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEE-echHHHHHHHHhhheEe
Confidence 4999999999999999999999999999999999999999999999988766666664 56678999999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001108 399 SDGQIVYQGPRELVLE 414 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1156)
.+|+|+|.||++++-+
T Consensus 222 ~~G~ivfDg~~~el~~ 237 (258)
T COG3638 222 KAGRIVFDGPASELTD 237 (258)
T ss_pred cCCcEEEeCChhhhhH
Confidence 9999999999988654
No 75
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-40 Score=372.32 Aligned_cols=216 Identities=26% Similarity=0.382 Sum_probs=192.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++..|. +..+|+|||++|++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 5 ~l~i~~v~k~yg-------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSFG-------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeecC-------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 578888887763 4689999999999999999999999999999999999887 5689999999987
Q ss_pred Chh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
... ..+|.+|+|+|+..+||+|||+||+.|+..++. ...+++.+++++++++.++|.++.++.+ .+||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHH
Confidence 653 456889999999999999999999999977442 3345667889999999999999998874 57999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|++|+||||.|+||.+-+..++.-++++.++ |.|.|++|||.. +.+.++||+.+|++ |++.-.|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCC
Confidence 9999999999999999999999999999999999999998654 999999999986 78899999999986 78988887
Q ss_pred CC
Q 001108 1093 LG 1094 (1156)
Q Consensus 1093 ~~ 1094 (1156)
+.
T Consensus 221 P~ 222 (352)
T COG3842 221 PE 222 (352)
T ss_pred HH
Confidence 53
No 76
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-40 Score=336.17 Aligned_cols=217 Identities=23% Similarity=0.317 Sum_probs=186.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCC---CCCeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~---~~~~~~G~i~i~g 931 (1156)
.++++|++.+|. ++.+|+|||+.|++++++||+|||||||||||++|.... .+-..+|+|.++|
T Consensus 7 ~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 577889988774 467999999999999999999999999999999999743 3446789999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-cccccCCCCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGV 1005 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~ 1005 (1156)
.++.. ...++.+|.|+|.+..+| +|++||+.|+.++....+ ++.++.|++.|+...|.+- .|++... .
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s--a 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS--A 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--c
Confidence 87643 357788999999999999 999999999988875433 6778889999999988753 4443322 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
.+|||||+|||||||||+-+|+||+||||||+|||.+...|-++|.++. +.-|||++||.+. ......|+..++.. |
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G 224 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-G 224 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-c
Confidence 4799999999999999999999999999999999999999999999997 4689999999986 47788899999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
+++.+|+.
T Consensus 225 ~LvE~g~T 232 (253)
T COG1117 225 ELVEFGPT 232 (253)
T ss_pred EEEEEcCH
Confidence 99999985
No 77
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.5e-40 Score=408.01 Aligned_cols=258 Identities=27% Similarity=0.368 Sum_probs=210.4
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.|+.+...+|+.++++.++|.-..+. ....+....+++|+|++|.+...
T Consensus 436 ~q~~~~~~~rL~dil~~~~E~~~~~~-----~~~~~~~~g~I~~~nvsf~y~~~-------------------------- 484 (709)
T COG2274 436 FQQAKVALERLGDILDTPPEQEGDKT-----LIHLPKLQGEIEFENVSFRYGPD-------------------------- 484 (709)
T ss_pred HHHHHHHHHHHHHHhcCCcccccccc-----cccccccCceEEEEEEEEEeCCC--------------------------
Confidence 78899999999999999888211110 12334446789999999998531
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
...+|+|+|++|+|||.+||+|+||||||||+|+|+|++.|. +|+|.+||+++++..+ |+.+|||+|+
T Consensus 485 ------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~ 555 (709)
T COG2274 485 ------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQD 555 (709)
T ss_pred ------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEccc
Confidence 124999999999999999999999999999999999999998 9999999999887665 5899999996
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+ ++++.||+||+.++. +....+.+.++++....+ + .+..++.++||
T Consensus 556 ~-~Lf~gSI~eNi~l~~----p~~~~e~i~~A~~~ag~~--------------------------~---fI~~lP~gy~t 601 (709)
T COG2274 556 P-FLFSGSIRENIALGN----PEATDEEIIEAAQLAGAH--------------------------E---FIENLPMGYDT 601 (709)
T ss_pred c-hhhcCcHHHHHhcCC----CCCCHHHHHHHHHHhCcH--------------------------H---HHHhccccccc
Confidence 6 555789999999875 223333444444332111 1 14568999999
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.||+.+. +||||||||++|||||+++|+||+||||||+||+.+...|.+.|.++. .++|+|+..| +..+.+.||+
T Consensus 602 ~v~E~G~-~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaH--Rl~ti~~adr 676 (709)
T COG2274 602 PVGEGGA-NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAH--RLSTIRSADR 676 (709)
T ss_pred ccccCCC-CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEc--cchHhhhccE
Confidence 9998665 799999999999999999999999999999999999999999999864 3566666443 4678999999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|+||++|+|+.+|+++++++
T Consensus 677 IiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 677 IIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred EEEccCCceeccCCHHHHHH
Confidence 99999999999999999986
No 78
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.5e-39 Score=343.63 Aligned_cols=196 Identities=30% Similarity=0.441 Sum_probs=166.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1156)
..+|++||+.|++||+++|+|||||||||||++|.|+..|+ +|.|.++|.++..... ++.+|||+|+..+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 67999999999999999999999999999999999999998 9999999998876542 3679999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
+|++||+||+.+++.+.+.... .....++.+++.+||.+..+.
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~--- 137 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLK--- 137 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhcc---
Confidence 9999999999988766543211 012345778899999866551
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
..+..|||||||||+|||||+.+|+++|.||||..||+.++..|++.|+++.+..+.| |+.++|+ +++...|||++.
T Consensus 138 -~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~t-ii~VTHd-~~lA~~~dr~i~ 214 (226)
T COG1136 138 -KKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKT-IIMVTHD-PELAKYADRVIE 214 (226)
T ss_pred -CCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCE-EEEEcCC-HHHHHhCCEEEE
Confidence 3345799999999999999999999999999999999999999999999987754444 4446665 678889999999
Q ss_pred EcCCeE
Q 001108 398 LSDGQI 403 (1156)
Q Consensus 398 L~~G~i 403 (1156)
|.+|++
T Consensus 215 l~dG~~ 220 (226)
T COG1136 215 LKDGKI 220 (226)
T ss_pred EeCCee
Confidence 999994
No 79
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.7e-39 Score=370.07 Aligned_cols=217 Identities=23% Similarity=0.297 Sum_probs=186.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++.+ .....+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 6788998887421 012469999999999999999999999999999999999876 56899999998764
Q ss_pred hh------cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
.. ..++.+||++|+..+++.+||+||+.|...... .+.++.++++.++++.++|.+..+..+ ..||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 235679999999999999999999998765432 344556677899999999998888763 5799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
|||||||+|||||+.+|++|+||||||+||+.++..++++|+++.++ |.|||++||+++ .+.+.||++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999986 47788999999986 7999
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
..|+.
T Consensus 221 ~~g~~ 225 (343)
T TIGR02314 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99885
No 80
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-40 Score=330.25 Aligned_cols=206 Identities=32% Similarity=0.377 Sum_probs=182.5
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1156)
..+++||||.++.|++++|+|||||||||+|++|++++.|+ +|+|++||.+..+.. .++.+|.++-+..++..||
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT 91 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLT 91 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhhh
Confidence 34899999999999999999999999999999999999999 999999999875432 3688999998888999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
++|||.|.+++.+.. +.+.+.+++.+.+.|+|.+|.|+.+|+
T Consensus 92 ~rEnl~~Fa~L~~l~----------------------------------~~~~kari~~l~k~l~l~~~~~rRv~~---- 133 (245)
T COG4555 92 ARENLKYFARLNGLS----------------------------------RKEIKARIAELSKRLQLLEYLDRRVGE---- 133 (245)
T ss_pred HHHHHHHHHHHhhhh----------------------------------hhHHHHHHHHHHHHhChHHHHHHHHhh----
Confidence 999999988775421 112345678899999999999999985
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
+|-|+||||+|||||+.+|++++|||||||||..+...+.+.++++. ..+.+|+..+|..+|+..+||+|++|++|+
T Consensus 134 -~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k--~egr~viFSSH~m~EvealCDrvivlh~Ge 210 (245)
T COG4555 134 -FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK--NEGRAVIFSSHIMQEVEALCDRVIVLHKGE 210 (245)
T ss_pred -hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh--cCCcEEEEecccHHHHHHhhheEEEEecCc
Confidence 99999999999999999999999999999999999999999999863 335566667899999999999999999999
Q ss_pred EEEEcChhHHHH
Q 001108 403 IVYQGPRELVLE 414 (1156)
Q Consensus 403 iv~~G~~~~~~~ 414 (1156)
+|+.|+.+++..
T Consensus 211 vv~~gs~~~l~~ 222 (245)
T COG4555 211 VVLEGSIEALDA 222 (245)
T ss_pred EEEcCCHHHHHH
Confidence 999999987754
No 81
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=6.7e-39 Score=366.82 Aligned_cols=206 Identities=24% Similarity=0.352 Sum_probs=177.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1156)
..+|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 45999999999999999999999999999999999999998 9999999998876432 46799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||+||+.|+....+... .+...++.++++.+||.+..|...
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~v~e~l~~vgL~~~~~~~~-- 138 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------------------------------DEIKRKVTELLALVGLGDKHDSYP-- 138 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999999765432110 011234677899999988777554
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..|||||||||+|||||+.+|++|+||||||+||+.++..+++.|+++.+..+ .+|+.++|+...+.++||+|++|
T Consensus 139 ---~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g-~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 139 ---SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLG-LTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999875434 44555888899999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
No 82
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-39 Score=352.63 Aligned_cols=214 Identities=24% Similarity=0.355 Sum_probs=181.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 65 (235)
T cd03261 1 IELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDIS 65 (235)
T ss_pred CeEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 35678887773 2469999999999999999999999999999999999876 46899999998754
Q ss_pred h------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
. ..+++.+||++|++.+++.+||+||+.+...... ..+.++.++.+.++++.++|.+..++.+ ..||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (235)
T cd03261 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELS 138 (235)
T ss_pred ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 2 2345679999999999999999999988643321 1233444567889999999987776653 4699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
|||||||+||+||+.+|+||+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.||++++|++ |+++
T Consensus 139 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~ 216 (235)
T cd03261 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIV 216 (235)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEE
Confidence 99999999999999999999999999999999999999999998764 899999999987 47788999999986 6888
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
+.|+.
T Consensus 217 ~~g~~ 221 (235)
T cd03261 217 AEGTP 221 (235)
T ss_pred EecCH
Confidence 88874
No 83
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=7.2e-39 Score=367.38 Aligned_cols=214 Identities=27% Similarity=0.383 Sum_probs=186.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++..++ ++.+|+||||+|++|+++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 41 ~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEEC
Confidence 588999998874 3569999999999999999999999999999999999876 5689999999876
Q ss_pred Ch--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001108 935 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 935 ~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 1012 (1156)
.. ...++.+||++|++.+++.+||+||+.|.+.++. .+..+..+.++++++.++|.+..++.+ .+|||||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHH
Confidence 43 2345679999999999999999999998665542 223344556788999999998877764 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||++||+||+++|++|||||||+|||+.++..++++|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~ 255 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGR 255 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999987 57889999999986 69999998
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 256 ~ 256 (340)
T PRK13536 256 P 256 (340)
T ss_pred H
Confidence 5
No 84
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-39 Score=368.05 Aligned_cols=205 Identities=24% Similarity=0.382 Sum_probs=178.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+|+++||+
T Consensus 20 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~ 96 (351)
T PRK11432 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLG 96 (351)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999999876554 37899999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+.++... .+....++++++.+||.+..+.. ++.|
T Consensus 97 eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gl~~~~~r~-----~~~L 137 (351)
T PRK11432 97 ENVGYGLKMLGVPK----------------------------------EERKQRVKEALELVDLAGFEDRY-----VDQI 137 (351)
T ss_pred HHHHHHHhHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCC-----hhhC
Confidence 99999875432211 01123567789999998776644 4579
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++|||||||++||+.++.++.+.|+++.+. .+++++.++|+..++.+++|+|++|++|+++
T Consensus 138 SgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~e~~~laD~i~vm~~G~i~ 216 (351)
T PRK11432 138 SGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ-FNITSLYVTHDQSEAFAVSDTVIVMNKGKIM 216 (351)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999987653 3455566889999999999999999999999
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
..|+++++.
T Consensus 217 ~~g~~~~~~ 225 (351)
T PRK11432 217 QIGSPQELY 225 (351)
T ss_pred EEcCHHHHH
Confidence 999999874
No 85
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=8.1e-39 Score=368.77 Aligned_cols=206 Identities=28% Similarity=0.407 Sum_probs=178.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ +|.++||+|+..+||++||+
T Consensus 18 ~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (353)
T TIGR03265 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVA 94 (353)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHH
Confidence 4899999999999999999999999999999999999998 9999999998865443 47899999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+.++... .+....++++++.+||++..|.. +..|
T Consensus 95 eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~L~~~~~~~-----~~~L 135 (353)
T TIGR03265 95 DNIAYGLKNRGMGR----------------------------------AEVAERVAELLDLVGLPGSERKY-----PGQL 135 (353)
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCCchhhCC-----hhhC
Confidence 99999875432110 01123567889999999877754 4569
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|+++|||||+++||..++.++.+.|+++.+. .++++|.++|+..++..++|+|++|++|+++
T Consensus 136 SgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~ 214 (353)
T TIGR03265 136 SGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR-LGVTTIMVTHDQEEALSMADRIVVMNHGVIE 214 (353)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999987653 3455566788999999999999999999999
Q ss_pred EEcChhHHHH
Q 001108 405 YQGPRELVLE 414 (1156)
Q Consensus 405 ~~G~~~~~~~ 414 (1156)
+.|+++++.+
T Consensus 215 ~~g~~~~~~~ 224 (353)
T TIGR03265 215 QVGTPQEIYR 224 (353)
T ss_pred EEcCHHHHHh
Confidence 9999998743
No 86
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-39 Score=369.16 Aligned_cols=205 Identities=25% Similarity=0.365 Sum_probs=177.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.+||.++....+ ++.+|||+|++.+++++||+
T Consensus 18 ~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 4999999999999999999999999999999999999998 9999999998876544 47899999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+..+... .+....++++++.+||++..+..+ +.|
T Consensus 95 eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 135 (356)
T PRK11650 95 ENMAYGLKIRGMPK----------------------------------AEIEERVAEAARILELEPLLDRKP-----REL 135 (356)
T ss_pred HHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCCh-----hhC
Confidence 99999875432110 011234677899999988776554 569
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++||||||||+||+.++..+.+.|+++.+. .++++|.++|+..++..++|+|++|++|+++
T Consensus 136 SgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~ 214 (356)
T PRK11650 136 SGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR-LKTTSLYVTHDQVEAMTLADRVVVMNGGVAE 214 (356)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999987653 3455666888999999999999999999999
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
..|+++++.
T Consensus 215 ~~g~~~~~~ 223 (356)
T PRK11650 215 QIGTPVEVY 223 (356)
T ss_pred EECCHHHHH
Confidence 999999874
No 87
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-39 Score=369.99 Aligned_cols=214 Identities=25% Similarity=0.366 Sum_probs=186.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++..++ +++.+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 4 l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 69 (356)
T PRK11650 4 LKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVN 69 (356)
T ss_pred EEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 67889888772 12469999999999999999999999999999999999876 56899999998764
Q ss_pred h-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
. ...++.+|||+|++.++|.+||+||+.|+...+ ..+..+.++.++++++.++|.++.++.+ .+|||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~Q 141 (356)
T PRK11650 70 ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQ 141 (356)
T ss_pred CCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHH
Confidence 3 223467999999999999999999999986543 2344555677899999999998888764 579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||+|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||++||++. ++.+.+|++++|++ |+++..|+.
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~~ 219 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGTP 219 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999999999999999999999999998765 999999999986 68899999999985 799999985
No 88
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.1e-38 Score=368.20 Aligned_cols=206 Identities=23% Similarity=0.347 Sum_probs=178.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCce--eEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS--GTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~--G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ + |+|.++|.++....+ ++.++||+|+..+++.+|
T Consensus 19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~t 95 (362)
T TIGR03258 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLK 95 (362)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCc
Confidence 4999999999999999999999999999999999999998 8 999999998865443 467999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.|+.+..+... .+....++++++.+||++..|..+ +
T Consensus 96 v~enl~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~~-----~ 136 (362)
T TIGR03258 96 VEDNVAFGLRAQKMPK----------------------------------ADIAERVADALKLVGLGDAAAHLP-----A 136 (362)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCCchhhCCh-----h
Confidence 9999999875432110 011234678899999998777655 4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++....++++++.++|+..++..++|+|++|++|+
T Consensus 137 ~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~ 216 (362)
T TIGR03258 137 QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGR 216 (362)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999987653324566668899999999999999999999
Q ss_pred EEEEcChhHHH
Q 001108 403 IVYQGPRELVL 413 (1156)
Q Consensus 403 iv~~G~~~~~~ 413 (1156)
++..|+++++.
T Consensus 217 i~~~g~~~~~~ 227 (362)
T TIGR03258 217 LAAHGEPQALY 227 (362)
T ss_pred EEEEcCHHHHH
Confidence 99999999884
No 89
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=8.4e-39 Score=368.66 Aligned_cols=214 Identities=25% Similarity=0.362 Sum_probs=188.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++ ++.+|+||||++++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 378899988774 3468999999999999999999999999999999999876 5689999999876
Q ss_pred Ch-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
.. ...+|.+|||+|+..++|.+||+||+.|+...+ ..+..+.++.++++++.++|.++.++. +.+||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHH
Confidence 43 224577999999999999999999999986543 234456677899999999999988876 357999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|++|+|||||++||+.++..+++.|+++.++ |.|+|++||+++ ++...+|++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 999999999986 68899999999986 68999997
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 219 ~ 219 (353)
T TIGR03265 219 P 219 (353)
T ss_pred H
Confidence 5
No 90
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-38 Score=367.29 Aligned_cols=214 Identities=24% Similarity=0.376 Sum_probs=188.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.+. ++.+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 578999988873 3468999999999999999999999999999999999876 5689999999876
Q ss_pred Chh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
... ..+|.+|||+|+..++|.+||+||+.|+...+. .+..+.+++++++++.++|.++.++.+ ..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 432 234679999999999999999999999875542 344566778999999999998887763 57999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|+||+|||||+|||+.++..+++.|+++.++ |+|+|++||+++ ++.+.+|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999987 68899999999986 68999987
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 221 ~ 221 (351)
T PRK11432 221 P 221 (351)
T ss_pred H
Confidence 5
No 91
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2e-36 Score=399.78 Aligned_cols=216 Identities=22% Similarity=0.358 Sum_probs=187.1
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++++|+++.++. +++.+|+|||+++++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 46889999888741 23569999999999999999999999999999999999876 568999999988
Q ss_pred CCh--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 934 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 934 ~~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
+.. ...++.+|||+|++.+++.+||+|++.|.+.++. ...++.++.++++++.++|.+..++.+ .+||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 643 2345679999999999999999999999877653 223344567899999999998888764 469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
|||||+||+||+.+|+||||||||+|||+.+++.++++|+++. +|+|||++||+++ ++...+||+++|++ |+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999995 6999999999986 57778999999986 6888888
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 73
No 92
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-39 Score=367.42 Aligned_cols=229 Identities=24% Similarity=0.369 Sum_probs=193.4
Q ss_pred cCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCC
Q 001108 110 VGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSS 189 (1156)
Q Consensus 110 ~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 189 (1156)
..+..+...|+|+||++++.+ +++||+++||+|++|+-+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~~---------------------------------k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYGP---------------------------------KRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeCC---------------------------------CCceecceeEEecCCCEEEEECCCCC
Confidence 567778889999999999842 12499999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHH
Q 001108 190 GKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTEL 266 (1156)
Q Consensus 190 GKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 266 (1156)
||||+|++|.++++ . +|+|.+||+++.+... |+.||||||+. ++++-||.+||.++. +...++.+.++
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~-~LFndTIl~NI~YGn----~sas~eeV~e~ 460 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDS-VLFNDTILYNIKYGN----PSASDEEVVEA 460 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCcc-cccchhHHHHhhcCC----CCcCHHHHHHH
Confidence 99999999999998 5 8999999999877654 57899999954 555679999999985 33445666666
Q ss_pred HHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccce
Q 001108 267 ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346 (1156)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vll 346 (1156)
|++...+ |. +..|+++++|.||+++.. |||||||||++|||++.+|+|++
T Consensus 461 ~k~a~~h--------------------------d~---i~~l~~GY~T~VGerG~~-LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 461 CKRAGLH--------------------------DV---ISRLPDGYQTLVGERGLM-LSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred HHHcCcH--------------------------HH---HHhccccchhhHhhcccc-cccchHHHHHHHHHHhcCCCeEE
Confidence 6654321 11 446899999999998875 99999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHHH
Q 001108 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 347 LDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
+|||||.||+.|..+|++.+... ..++|+|+.+ |. ..+..-||+|++|++|++...|++++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~Iv-H~-l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDV--MSGRTVIMIV-HR-LDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHh--cCCCeEEEEE-ec-chhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999873 2456666655 43 46788999999999999999999999976
No 93
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.5e-38 Score=367.01 Aligned_cols=214 Identities=24% Similarity=0.334 Sum_probs=187.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEE--EEEEEcCc
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISGY 932 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~--G~i~i~g~ 932 (1156)
.++++|+++++. +..+|+|||++|++||+++|+|||||||||||++|+|... +.+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCE
Confidence 578899988874 2469999999999999999999999999999999999876 457 99999998
Q ss_pred cCCh-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 933 PKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 933 ~~~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
++.. ...+|.+|||+|+..++|.+||+||+.|+...+ ..+..+.+++++++++.++|.++.++.+ .+||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 7643 223567999999999999999999999986543 2344556677999999999999888774 579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |.|+|++||+++ ++...+|++++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999876 899999999986 57889999999986 69999
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 220 ~g~~ 223 (362)
T TIGR03258 220 HGEP 223 (362)
T ss_pred EcCH
Confidence 9875
No 94
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-39 Score=345.63 Aligned_cols=214 Identities=23% Similarity=0.334 Sum_probs=188.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
+.+++++|+|+. +..+|+++|++|++|+.++|+|+||||||||+++|+|... +..|.|.++|.+..
T Consensus 4 i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeecc
Confidence 678999999852 2579999999999999999999999999999999999877 45799999998855
Q ss_pred ----hhcccceEEEeccCCCCC-CCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 936 ----QETFARISGYCEQNDIHS-PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 936 ----~~~~~~~~gyv~q~~~~~-~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
...+++.+|||+|++..+ ..-||.|.+.|+..-. ..+.++.+++++++++.+++.+++++. +..|||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSG 141 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLSG 141 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCC
Confidence 345778899999998654 4579999999986543 445567889999999999999998876 457999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
||||||+||.+|+.+|++|+|||||||||+.+++.+++.++++..+ |.|||++|||.+ .+.+++|++++|++ |++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~ 219 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILA 219 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEee
Confidence 9999999999999999999999999999999999999999999877 689999999987 48888999999986 68999
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|++
T Consensus 220 ~g~p 223 (235)
T COG1122 220 DGDP 223 (235)
T ss_pred cCCH
Confidence 9974
No 95
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.2e-38 Score=366.91 Aligned_cols=205 Identities=27% Similarity=0.374 Sum_probs=177.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|++.+||++||+
T Consensus 28 ~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 104 (375)
T PRK09452 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVF 104 (375)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999998865544 47799999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+.++... .+....++++++.+||++..+..+ ..|
T Consensus 105 eNi~~~l~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~p-----~~L 145 (375)
T PRK09452 105 ENVAFGLRMQKTPA----------------------------------AEITPRVMEALRMVQLEEFAQRKP-----HQL 145 (375)
T ss_pred HHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 99999865432110 011234677899999988777554 569
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++||||||+++||..++..+.+.|+++.+.. ++++|.++|+..++..++|+|++|++|+++
T Consensus 146 SgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tiI~vTHd~~ea~~laDri~vl~~G~i~ 224 (375)
T PRK09452 146 SGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGRIE 224 (375)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999887643 455666889999999999999999999999
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
..|+++++.
T Consensus 225 ~~g~~~~i~ 233 (375)
T PRK09452 225 QDGTPREIY 233 (375)
T ss_pred EEcCHHHHH
Confidence 999998874
No 96
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-38 Score=343.71 Aligned_cols=210 Identities=28% Similarity=0.394 Sum_probs=176.7
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 5678887763 2469999999999999999999999999999999999875 568999999987643
Q ss_pred h-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001108 937 E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1156)
Q Consensus 937 ~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 1015 (1156)
. ..++.++|++|++.+++.+|++||+.+...... ......++.++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 1 234579999999988889999999988654321 223344566889999999987776653 4699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1016 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
++||+||+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||+++|+++ ++.+.||++++|++ |++++.|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999999999999999876 4899999999986 47788999999986 5776654
No 97
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.6e-38 Score=359.18 Aligned_cols=205 Identities=27% Similarity=0.406 Sum_probs=177.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1156)
.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+|||+|++.+++.+||
T Consensus 21 ~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv 97 (306)
T PRK13537 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTV 97 (306)
T ss_pred EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcH
Confidence 4999999999999999999999999999999999999998 999999999875432 24679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.|.++..+.... +....++.+++.+||.+.+++.++ +
T Consensus 98 ~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 138 (306)
T PRK13537 98 RENLLVFGRYFGLSAA----------------------------------AARALVPPLLEFAKLENKADAKVG-----E 138 (306)
T ss_pred HHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHcCCchHhcCchh-----h
Confidence 9999986655432100 011245678899999988887765 5
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.. . +++|+.++|...++.++||+|++|++|++
T Consensus 139 LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~till~sH~l~e~~~~~d~i~il~~G~i 216 (306)
T PRK13537 139 LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVIEEGRK 216 (306)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998753 3 45566678899999999999999999999
Q ss_pred EEEcChhHHHH
Q 001108 404 VYQGPRELVLE 414 (1156)
Q Consensus 404 v~~G~~~~~~~ 414 (1156)
++.|+++++..
T Consensus 217 ~~~g~~~~l~~ 227 (306)
T PRK13537 217 IAEGAPHALIE 227 (306)
T ss_pred EEECCHHHHHh
Confidence 99999998764
No 98
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-39 Score=326.67 Aligned_cols=205 Identities=26% Similarity=0.365 Sum_probs=182.4
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhc----ccceEEEeccCCCCCC
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET----FARISGYCEQNDIHSP 954 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~q~~~~~~ 954 (1156)
+++.++++||+.|++||++||+|||||||||.+.++.|... +.+|.|.++|.++.... .+.-+||+||++..|.
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 45789999999999999999999999999999999999877 56899999999876532 2235899999999999
Q ss_pred CCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001108 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034 (1156)
Q Consensus 955 ~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEP 1034 (1156)
.+||+||++.....+.. +....+++++++++|+.+++.++++... ..||||||+|+.|||||+.+|+.|+||||
T Consensus 93 ~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 93 KLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999987766642 2233466677899999999999999863 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1035 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1035 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
++|+||.+...|+++++.+.+.|.-|++|-|... +....|||.+++.+ |+++..|.+
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p 223 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSP 223 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCH
Confidence 9999999999999999999999999999999987 78999999999987 699999985
No 99
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3e-39 Score=400.17 Aligned_cols=258 Identities=23% Similarity=0.391 Sum_probs=210.5
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCC--CcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDL--PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (1156)
...++....+++++++..+. +... +..+... -..+|+|+||+|.|.
T Consensus 951 ~~ka~~Aa~~iF~i~dr~~~-----i~~~-~~~~~~~~~~~G~I~~~~V~F~YP-------------------------- 998 (1228)
T KOG0055|consen 951 ISKAKIAAGSIFEILDRKPT-----IDPD-STSGGKLPNVKGDIEFRNVSFAYP-------------------------- 998 (1228)
T ss_pred HHHHHHHHHHHHHHhcCCCC-----CCCC-CCCCCccccceeEEEEeeeEeeCC--------------------------
Confidence 34577778888888887763 2111 1234223 356799999999983
Q ss_pred hhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEc
Q 001108 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (1156)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~ 232 (1156)
++ +..+||+|+|+++++|+.+||+|||||||||...+|-+.|+|+ +|.|.+||+++++.+. |+++|.|+
T Consensus 999 ----sR-P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVs 1070 (1228)
T KOG0055|consen 999 ----TR-PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVS 1070 (1228)
T ss_pred ----CC-CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceec
Confidence 22 4467999999999999999999999999999999999999998 9999999999998876 58899999
Q ss_pred CCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccc
Q 001108 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1156)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1156)
|+|.+|. .|+||||.|+. .. -..+.+.++++....+++ +.+|++++
T Consensus 1071 QEP~LF~-~TIrENI~YG~--~~--vs~~eIi~Aak~ANaH~F-----------------------------I~sLP~Gy 1116 (1228)
T KOG0055|consen 1071 QEPVLFN-GTIRENIAYGS--EE--VSEEEIIEAAKLANAHNF-----------------------------ISSLPQGY 1116 (1228)
T ss_pred cCchhhc-ccHHHHHhccC--CC--CCHHHHHHHHHHhhhHHH-----------------------------HhcCcCcc
Confidence 9997775 69999999982 11 233444555544433221 56899999
Q ss_pred cccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 001108 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1156)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~ 392 (1156)
||.||+++. +||||||||++||||+++||+||||||.||+||+.+.+-+.+.|.+.. .++|+|+.. |+..+.+.+
T Consensus 1117 DT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIA--HRLSTIqna 1191 (1228)
T KOG0055|consen 1117 DTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIA--HRLSTIQNA 1191 (1228)
T ss_pred cCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEe--cchhhhhcC
Confidence 999999887 599999999999999999999999999999999999999999999864 345555543 467899999
Q ss_pred CeEEEEcCCeEEEEcChhHHHH
Q 001108 393 DDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 393 D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
|.|+|+++|+|+++|++++++.
T Consensus 1192 D~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1192 DVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred CEEEEEECCEEEecccHHHHHh
Confidence 9999999999999999999976
No 100
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.3e-38 Score=362.12 Aligned_cols=202 Identities=27% Similarity=0.379 Sum_probs=176.9
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh--hcccceEEEeccCCCCCCCCC
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVT 957 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~~~T 957 (1156)
++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 4579999999999999999999999999999999999876 568999999987643 234567999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001108 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037 (1156)
Q Consensus 958 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsg 1037 (1156)
|+||+.|.+.++. ......++.++++++.++|.+..++.+ ..|||||||||+||+||+++|++|||||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998766542 233344567889999999988777764 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1038 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1038 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999878999999999987 57789999999986 689998874
No 101
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.8e-38 Score=344.21 Aligned_cols=207 Identities=23% Similarity=0.321 Sum_probs=175.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++. +.+.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 568889888741 12469999999999999999999999999999999999866 46899999998753
Q ss_pred h------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
. ..+++.++|++|++.+++.+||+||+.+....+. ...+..++.++++++.+++.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 2 1245679999999999999999999998755432 223344567889999999988777653 4699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++|
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRG 214 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999777999999999986 467789999999874
No 102
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-40 Score=362.07 Aligned_cols=257 Identities=21% Similarity=0.358 Sum_probs=215.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.|..-.-+|++++++++++| +.+......+..++..|.|+||++.+++
T Consensus 502 iQ~nfiDmEnmfdllkee~e-----Vvd~P~a~pl~~~~G~i~fsnvtF~Y~p--------------------------- 549 (790)
T KOG0056|consen 502 IQKNFIDMENMFDLLKEEPE-----VVDLPGAPPLKVTQGKIEFSNVTFAYDP--------------------------- 549 (790)
T ss_pred HHHhhhhHHHHHHHhhcCch-----hhcCCCCCCccccCCeEEEEEeEEecCC---------------------------
Confidence 45556668899999999998 8887777888889999999999999863
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc---CccceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF---VPQRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~---~~~~~~~yv~Q~ 234 (1156)
.+++|+||||++.||+.+||+||||+||||++++|.++++.+ +|.|++||++++.. ..++.||.||||
T Consensus 550 ------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQD 620 (790)
T KOG0056|consen 550 ------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQD 620 (790)
T ss_pred ------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCc
Confidence 245999999999999999999999999999999999999988 99999999998653 346789999996
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
..+| +.|+..||.|+. ++...|.+.++++... +.| ++++++++++|
T Consensus 621 tvLF-NdTI~yNIryak----~~AsneevyaAAkAA~--------------------------IHd---rIl~fPegY~t 666 (790)
T KOG0056|consen 621 TVLF-NDTILYNIRYAK----PSASNEEVYAAAKAAQ--------------------------IHD---RILQFPEGYNT 666 (790)
T ss_pred ceee-cceeeeheeecC----CCCChHHHHHHHHHhh--------------------------HHH---HHhcCchhhhh
Confidence 6555 569999999874 3333333333332211 112 37899999999
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
+||+++.+ |||||||||+|||+++..|.+++|||.||+||..+.++|..+|.+++. ++|+|+.. |+..+.-.+|.
T Consensus 667 ~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvA--HRLSTivnAD~ 741 (790)
T KOG0056|consen 667 RVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVA--HRLSTIVNADL 741 (790)
T ss_pred hhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEe--eeehheecccE
Confidence 99999997 999999999999999999999999999999999999999999999874 44555433 45667778999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|+++++|+|++.|.++|++.
T Consensus 742 ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 742 ILVISNGRIVERGRHEELLK 761 (790)
T ss_pred EEEEeCCeEeecCcHHHHHh
Confidence 99999999999999999875
No 103
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.9e-38 Score=364.17 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=186.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.+. ++.+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67888887763 2469999999999999999999999999999999999876 56899999998764
Q ss_pred h-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
. ...++.+|||+|++.++|.+||+||+.|+...+.. ...+.++.+++++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 3 22346799999999999999999999998654211 12344556678899999999998887763 57999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|+|++||+++ ++...+|++++|++ |++++.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 58889999999986 69999987
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 221 ~ 221 (353)
T PRK10851 221 P 221 (353)
T ss_pred H
Confidence 5
No 104
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.3e-38 Score=358.88 Aligned_cols=214 Identities=27% Similarity=0.373 Sum_probs=183.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+||||+|++|+++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 477889988774 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Ch--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001108 935 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 935 ~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 1012 (1156)
.. ...++.+||++|++.+++.+||+||+.+.+..+. .+.++..+.++++++.++|.+..++.+ ..|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 2245679999999999999999999987654331 233344456788999999988777664 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||++||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999987 57788999999986 68999887
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 4
No 105
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-38 Score=342.25 Aligned_cols=215 Identities=24% Similarity=0.362 Sum_probs=179.5
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++... ..+.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~~---------~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 70 (220)
T cd03293 2 EVRNVSKTYGGGG---------GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG 70 (220)
T ss_pred eEEEEEEEcCCCC---------cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc
Confidence 5678877764110 11469999999999999999999999999999999999865 468999999987642
Q ss_pred hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 001108 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL 1016 (1156)
Q Consensus 937 ~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl 1016 (1156)
.++.++|++|++.+++.+|++||+.+....+. ...+...+.++++++.++|.+..++.+ ..||||||||+
T Consensus 71 --~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 140 (220)
T cd03293 71 --PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRV 140 (220)
T ss_pred --ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHH
Confidence 34579999999988888999999988754432 223344567889999999987766653 46999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEecCC
Q 001108 1017 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPL 1093 (1156)
Q Consensus 1017 ~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~-Gg~~~~~g~~ 1093 (1156)
+||+||+.+|++|+|||||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++.+.||++++|++ .|+++..++.
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999999999999864 4899999999986 47788999999985 4788877653
No 106
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.7e-39 Score=330.62 Aligned_cols=234 Identities=24% Similarity=0.412 Sum_probs=200.7
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCH
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 958 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv 958 (1156)
+++.+++||||.++||+++|++|+|||||||++++|.|... +.+|.|.++|.++.+.. ..++||.|.+..+++.+||
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~tv 89 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEI-KNRIGYLPEERGLYPKMTV 89 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhhh-hhhcccChhhhccCccCcH
Confidence 56789999999999999999999999999999999999887 56899999999987643 4568999999999999999
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001108 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1156)
Q Consensus 959 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgL 1038 (1156)
.|.|.|.|.++ .++.++.++.+...|+.+++.....+. +..||.|++|++.+-.+++++|++|+||||+|||
T Consensus 90 ~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfisaviHePeLlILDEPFSGL 161 (300)
T COG4152 90 EDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161 (300)
T ss_pred HHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCC
Confidence 99999999987 456777888899999999999988877 4679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC-------C-----cchhHHHHHHh
Q 001108 1039 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG-------R-----HSCHLISYFEA 1106 (1156)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~-------~-----~~~~~~~~f~~ 1106 (1156)
||.+.+.+.+.+.++.+.|.|||+++|+++ .+.++||++++|++ |+.|..|+.. + .+..-.+....
T Consensus 162 DPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v~~ir~~~Gkk~~~ies~~s~eeL~~ 239 (300)
T COG4152 162 DPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVEDIRRSFGKKRLVIESDLSLEELAN 239 (300)
T ss_pred ChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccHHHHHHhcCCceEEEeccCchHHHhc
Confidence 999999999999999999999999999997 58899999999986 6888888752 1 12222344677
Q ss_pred CCCcccCCCCCCCccEEEEE
Q 001108 1107 IPGVQKIKDGYNPATWMLEV 1126 (1156)
Q Consensus 1107 ~~g~~~~~~~~np~~~~l~~ 1126 (1156)
+||+.++..... ..|.+.+
T Consensus 240 ipgi~~~~~~~~-G~~~i~i 258 (300)
T COG4152 240 IPGILKITETKD-GSWRIQI 258 (300)
T ss_pred CCCceeeeeccC-CceEeec
Confidence 888876654222 3344444
No 107
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-38 Score=330.83 Aligned_cols=205 Identities=27% Similarity=0.333 Sum_probs=177.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC----ccceEEEEcCCC--CCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHD--NHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~----~~~~~~yv~Q~d--~~~~ 239 (1156)
++|+|||+++.+||.++|+|+||||||||+++|+|+.+|+ +|+|.++|.+..... ..+.+-+|+||+ .+.|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 6999999999999999999999999999999999999998 999999998765542 357799999996 5789
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
..||++.|.-+.+..+... ...++.++|+.+||+... -++
T Consensus 98 ~~tv~~~l~Epl~~~~~~~------------------------------------~~~~i~~~L~~VgL~~~~----l~R 137 (252)
T COG1124 98 RRTVGRILSEPLRPHGLSK------------------------------------SQQRIAELLDQVGLPPSF----LDR 137 (252)
T ss_pred chhHHHHHhhhhccCCccH------------------------------------HHHHHHHHHHHcCCCHHH----Hhc
Confidence 9999999987765433211 112256789999998643 245
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.+..|||||||||+|||||+.+|++|++|||||+||++.+.+|++.|.++.+ ..+.+++.++|+..-+..+||||+||+
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~-~~~lt~l~IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKK-ERGLTYLFISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHH-hcCceEEEEeCcHHHHHHHhhheeeee
Confidence 6778999999999999999999999999999999999999999999998865 456677779999999999999999999
Q ss_pred CCeEEEEcChhHHHH
Q 001108 400 DGQIVYQGPRELVLE 414 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1156)
+|++++.++.+++..
T Consensus 217 ~G~ivE~~~~~~l~~ 231 (252)
T COG1124 217 NGQIVEIGPTEELLS 231 (252)
T ss_pred CCeEEEeechhhhhc
Confidence 999999999998865
No 108
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-38 Score=339.63 Aligned_cols=210 Identities=25% Similarity=0.422 Sum_probs=177.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (210)
T cd03269 1 LEVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLD 65 (210)
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchh
Confidence 35678887763 2469999999999999999999999999999999999865 46899999998765
Q ss_pred hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001108 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1156)
Q Consensus 936 ~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 1015 (1156)
. ..++.++|++|++.+++.+|++||+.+....+. .......+.+.++++.+++.+..+.. +.+||||||||
T Consensus 66 ~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 136 (210)
T cd03269 66 I-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQK 136 (210)
T ss_pred H-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHH
Confidence 3 345679999999998889999999988655432 22334456788999999998776665 35699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1016 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999998877999999999986 46778999999986 5776653
No 109
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=342.34 Aligned_cols=207 Identities=29% Similarity=0.420 Sum_probs=180.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCC----CcCccceEEEEcCCC-CCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD----EFVPQRTAAYISQHD-NHIG 239 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~----~~~~~~~~~yv~Q~d-~~~~ 239 (1156)
..+|+|+|+.+++|+.++|+||||||||||+++|+|++.|+ +|+|.++|.++. ....++.+|||+|++ ..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 45999999999999999999999999999999999999998 899999999865 233468899999995 5688
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.-||.|.++|+....+... ++...+++.+++.+||.+.++.
T Consensus 94 ~~tV~~evafg~~n~g~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~r----- 134 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPR----------------------------------EEIEERVAEALELVGLEELLDR----- 134 (235)
T ss_pred cCcHHHHHhhchhhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhccC-----
Confidence 8899999999987765421 1123467889999999988764
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.+..|||||||||+||.+|+.+|++|+|||||||||+..+.++++.++++.. .++.+||.++|+...+..++|++++|+
T Consensus 135 ~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~-~~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 135 PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 4457999999999999999999999999999999999999999999999876 444556668899999999999999999
Q ss_pred CCeEEEEcChhHHHH
Q 001108 400 DGQIVYQGPRELVLE 414 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1156)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999887754
No 110
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-38 Score=341.49 Aligned_cols=213 Identities=29% Similarity=0.380 Sum_probs=180.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++++ ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecC
Confidence 35678887763 2469999999999999999999999999999999999865 46899999997653
Q ss_pred h--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
. ...++.++|++|++.+++.+||+||+.+....+. ...++.++.++++++.++|.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 137 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMR 137 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHH
Confidence 2 2234579999999999899999999998755432 223344567889999999987777653 46999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+
T Consensus 138 qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 215 (220)
T cd03265 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGT 215 (220)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 9999999999999999999999999999999999999998876 899999999987 57788999999986 68888776
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 216 ~ 216 (220)
T cd03265 216 P 216 (220)
T ss_pred h
Confidence 3
No 111
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=5.1e-38 Score=363.77 Aligned_cols=214 Identities=22% Similarity=0.323 Sum_probs=187.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.+. ++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488999998874 2468999999999999999999999999999999999876 5689999999876
Q ss_pred Ch-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
.. ...+|.+|||+|++.++|.+||+||+.|+...+. .+..+.++.++++++.++|.++.++.+ ..||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK---TPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 2235679999999999999999999999865432 334455667899999999998888764 57999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |.|||++||++. ++...+|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998764 999999999986 68889999999986 79999987
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 229 ~ 229 (375)
T PRK09452 229 P 229 (375)
T ss_pred H
Confidence 4
No 112
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-38 Score=344.10 Aligned_cols=206 Identities=30% Similarity=0.391 Sum_probs=172.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (235)
T cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFD 90 (235)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccCC
Confidence 4999999999999999999999999999999999999998 999999998875432 2457999999998899
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.++......... .+....++.+++.+||.+..++.+
T Consensus 91 ~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 134 (235)
T cd03261 91 SLTVFENVAFPLREHTRLSE---------------------------------EEIREIVLEKLEAVGLRGAEDLYP--- 134 (235)
T ss_pred CCcHHHHHHHHHhhccCCCH---------------------------------HHHHHHHHHHHHHcCCchhhcCCh---
Confidence 99999999987532110000 001123566788999987666555
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||++|+.+|+++||||||+|||+.++..+++.|++++... +++|+.++|+..++.++||+|++|+
T Consensus 135 --~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~vsH~~~~~~~~~d~v~~l~ 211 (235)
T cd03261 135 --AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKEL-GLTSIMVTHDLDTAFAIADRIAVLY 211 (235)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHHHHhcCEEEEEE
Confidence 4699999999999999999999999999999999999999999999876532 4455567888889999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|++++.|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (235)
T cd03261 212 DGKIVAEGTPEELR 225 (235)
T ss_pred CCeEEEecCHHHHc
Confidence 99999999988753
No 113
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=6.5e-38 Score=361.27 Aligned_cols=209 Identities=28% Similarity=0.392 Sum_probs=177.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|+++|+++....+ ++.++||+|++.+++.+||+
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~ 92 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVF 92 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHH
Confidence 4999999999999999999999999999999999999998 9999999998865443 36799999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+........ ...+....++.+++.+||++..|..+ ..|
T Consensus 93 eni~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 137 (353)
T PRK10851 93 DNIAFGLTVLPRRERP------------------------------NAAAIKAKVTQLLEMVQLAHLADRYP-----AQL 137 (353)
T ss_pred HHHHhhhhhcccccCC------------------------------CHHHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 9999986532100000 00011235678899999987766544 569
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ..+.+++.++|+..++..++|+|++|++|+++
T Consensus 138 SgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~ 216 (353)
T PRK10851 138 SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE-ELKFTSVFVTHDQEEAMEVADRVVVMSQGNIE 216 (353)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998765 33455666889999999999999999999999
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
+.|+++++.
T Consensus 217 ~~g~~~~i~ 225 (353)
T PRK10851 217 QAGTPDQVW 225 (353)
T ss_pred EEcCHHHHH
Confidence 999999874
No 114
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-38 Score=361.69 Aligned_cols=217 Identities=22% Similarity=0.294 Sum_probs=184.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++++.. ..++.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5788998887411 013579999999999999999999999999999999999876 46899999998764
Q ss_pred hh------cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
.. ..++.+||++|++.+++.+||+||+.+....+. .+.++.++.++++++.++|.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 235679999999999999999999998765432 233445567889999999988777653 5799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 899999999987 47788999999986 7899
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T PRK11153 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 98874
No 115
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=5.6e-38 Score=339.54 Aligned_cols=211 Identities=26% Similarity=0.390 Sum_probs=177.7
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~ 65 (213)
T cd03301 1 VELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVT 65 (213)
T ss_pred CEEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 35778887764 2468999999999999999999999999999999999865 46899999998764
Q ss_pred hh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.. ..++.++|++|++.+++..|++||+.+....+. ...++.++.++++++.+++.+..+..+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (213)
T cd03301 66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQ 137 (213)
T ss_pred cCCcccceEEEEecChhhccCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHH
Confidence 31 223579999999988888999999988654331 223344567888999999987777653 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
|++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. ++.+.+|++++|++ |++++.|
T Consensus 138 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 138 RVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999764 899999999986 47788999999986 6777765
No 116
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.5e-38 Score=317.13 Aligned_cols=200 Identities=27% Similarity=0.397 Sum_probs=175.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHI 238 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1156)
..+|+||||.|++||++.|+||||||||||||+|.+...|+ +|+|.+||+++.... .+|+||+|+||.-++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 45999999999999999999999999999999999999999 999999999986543 258999999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+..||.||++|+.+..|... .+.+.++.++|+..||.+.++.
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~~~---- 133 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKHKARA---- 133 (223)
T ss_pred ccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccchhhhc----
Confidence 99999999999988776422 1234567889999999988764
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
.+..|||||||||+||||++.+|++|+.||||-.||+..+.+|++.+.++-+ .+|+|+..+|+..-+..+--+++.|
T Consensus 134 -lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~~rvl~l 210 (223)
T COG2884 134 -LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVLAL 210 (223)
T ss_pred -CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhccCcEEEE
Confidence 4557999999999999999999999999999999999999999999998754 3566666788888888888899999
Q ss_pred cCCeEEEEcC
Q 001108 399 SDGQIVYQGP 408 (1156)
Q Consensus 399 ~~G~iv~~G~ 408 (1156)
++|+++....
T Consensus 211 ~~Grl~~d~~ 220 (223)
T COG2884 211 EDGRLVRDES 220 (223)
T ss_pred eCCEEEeccc
Confidence 9999987643
No 117
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=5.3e-38 Score=361.26 Aligned_cols=207 Identities=21% Similarity=0.310 Sum_probs=178.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1156)
+.+|+|+||+|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 45999999999999999999999999999999999999998 9999999999876543 4689999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++++||+||+.|+.+..+... .+...++.++++.+||+...++.+
T Consensus 83 ~~~~TV~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~vgL~~~~~~~p- 127 (363)
T TIGR01186 83 FPHMTILQNTSLGPELLGWPE----------------------------------QERKEKALELLKLVGLEEYEHRYP- 127 (363)
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCchhhhCCh-
Confidence 999999999999875543211 011234677899999987766554
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +.+|+.++|+..++..++|+|++
T Consensus 128 ----~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~-~~Tii~vTHd~~ea~~~~drI~v 202 (363)
T TIGR01186 128 ----DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL-QKTIVFITHDLDEAIRIGDRIVI 202 (363)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 4699999999999999999999999999999999999999999999875533 44556688999999999999999
Q ss_pred EcCCeEEEEcChhHHHH
Q 001108 398 LSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (1156)
|.+|+++..|+++++..
T Consensus 203 l~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 203 MKAGEIVQVGTPDEILR 219 (363)
T ss_pred EeCCEEEeeCCHHHHHh
Confidence 99999999999998753
No 118
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=6.8e-38 Score=355.74 Aligned_cols=212 Identities=23% Similarity=0.364 Sum_probs=184.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++++ ++.+|+|+||+|++||++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67888888773 3569999999999999999999999999999999999876 56899999998764
Q ss_pred h--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
. ...++.+||++|++.+++.+||.||+.|.+.++. .+.++..+.++++++.++|.+..++.+ +.||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHH
Confidence 3 2345679999999999999999999998776542 223444566889999999998887764 46999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||++||+||+++|++|||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999864 799999999987 58889999999986 799999885
No 119
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=7.4e-38 Score=344.08 Aligned_cols=215 Identities=26% Similarity=0.354 Sum_probs=179.5
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++ ++.+|+|+||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 5678877763 2469999999999999999999999999999999999875 468999999987643
Q ss_pred h---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCC-------CChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001108 937 E---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE-------VDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 937 ~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~-------~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~ 1005 (1156)
. . .++.++|++|++.+++.+||+||+.+......... .......+.++++++.+++.+..+.. +
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----A 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----h
Confidence 1 1 23468999999999999999999988754332110 01234455688999999998776665 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-G 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999999878999999999987 47788999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 220 ~i~~~~~~ 227 (236)
T cd03219 220 RVIAEGTP 227 (236)
T ss_pred EEEeecCH
Confidence 88888764
No 120
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=361.82 Aligned_cols=205 Identities=25% Similarity=0.340 Sum_probs=177.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.+|||+|+..+|+++||+
T Consensus 33 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 109 (377)
T PRK11607 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVE 109 (377)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999998865443 47899999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+.++... .+....++++++.+||.+..+.. +.+|
T Consensus 110 eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~l~L~~~~~~~-----~~~L 150 (377)
T PRK11607 110 QNIAFGLKQDKLPK----------------------------------AEIASRVNEMLGLVHMQEFAKRK-----PHQL 150 (377)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCC-----hhhC
Confidence 99999875432110 01123467789999998766654 4579
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++|||||||++||..++..+.+.|+++.+.. +.+++.++|+..++..++|+|++|++|+++
T Consensus 151 SgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~laDri~vl~~G~i~ 229 (377)
T PRK11607 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV-GVTCVMVTHDQEEAMTMAGRIAIMNRGKFV 229 (377)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999998876544 455666889999999999999999999999
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
..|+++++.
T Consensus 230 ~~g~~~~~~ 238 (377)
T PRK11607 230 QIGEPEEIY 238 (377)
T ss_pred EEcCHHHHH
Confidence 999999874
No 121
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-38 Score=325.61 Aligned_cols=206 Identities=24% Similarity=0.411 Sum_probs=172.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc----ceEEEEcCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIGE 240 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~----~~~~yv~Q~d~~~~~ 240 (1156)
.++|++||+.+++||+++|+||||+||||||++|+|..++. +|+|.++|.+++...+. +-++||||....|+.
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~ 92 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPR 92 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhh
Confidence 56999999999999999999999999999999999999987 99999999999887663 569999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcC-Cccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LDVCADTMVGDE 319 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 319 (1156)
|||+|||..++..... .. . ...+ .|.+.+.|= |.+-.+..-|
T Consensus 93 LTVeENL~~g~~~~~~-~~----------~------~~~~------------------~e~v~~lFP~Lker~~~~aG-- 135 (237)
T COG0410 93 LTVEENLLLGAYARRD-KE----------A------QERD------------------LEEVYELFPRLKERRNQRAG-- 135 (237)
T ss_pred CcHHHHHhhhhhcccc-cc----------c------cccc------------------HHHHHHHChhHHHHhcCccc--
Confidence 9999999987643211 00 0 0000 222333332 3333444444
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.|||||||.++|||||+++|++|+|||||.||-|.-..+|++.++++.+ ..+.+|+.+.|+...+.+++|+.++|.
T Consensus 136 ---~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~-~~g~tIlLVEQn~~~Al~iaDr~yvle 211 (237)
T COG0410 136 ---TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRK-EGGMTILLVEQNARFALEIADRGYVLE 211 (237)
T ss_pred ---CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHH-cCCcEEEEEeccHHHHHHhhCEEEEEe
Confidence 5999999999999999999999999999999999999999999999875 345677779999999999999999999
Q ss_pred CCeEEEEcChhHHHH
Q 001108 400 DGQIVYQGPRELVLE 414 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1156)
+|+|++.|+.+++..
T Consensus 212 ~Griv~~G~~~eL~~ 226 (237)
T COG0410 212 NGRIVLSGTAAELLA 226 (237)
T ss_pred CCEEEEecCHHHHhc
Confidence 999999999998854
No 122
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-38 Score=329.66 Aligned_cols=217 Identities=26% Similarity=0.343 Sum_probs=180.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++.+|++..++.... ...+|+||||+|.+||++||+|+||||||||.++|+|... +..|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~~---------~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGKF---------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCcc---------hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCccc
Confidence 3678888877753321 1259999999999999999999999999999999999887 5689999999775
Q ss_pred Chh----cccceEEEeccCCC--CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-cccccCCCCCCC
Q 001108 935 KQE----TFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSG 1007 (1156)
Q Consensus 935 ~~~----~~~~~~gyv~q~~~--~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~ 1007 (1156)
... .+.+.+.+|+|++. +.|..||++.|.=..... ..++. .+++.++++.+||.+- .++. +.+
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~~--~~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSKS--QQRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccHH--HHHHHHHHHHcCCCHHHHhcC-----chh
Confidence 432 46778999999985 568899999887654431 22222 3338999999999763 3443 357
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
||||||||+||||||+.+|++|+||||||+||+..+..|++++.++.++ |.|+|+++||.+. +...|||+++|++ |+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~-G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDN-GQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeC-Ce
Confidence 9999999999999999999999999999999999999999999999754 8899999999875 7789999999997 69
Q ss_pred EEEecCCC
Q 001108 1087 EIYVGPLG 1094 (1156)
Q Consensus 1087 ~~~~g~~~ 1094 (1156)
++..++.+
T Consensus 220 ivE~~~~~ 227 (252)
T COG1124 220 IVEIGPTE 227 (252)
T ss_pred EEEeechh
Confidence 99999853
No 123
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-38 Score=363.51 Aligned_cols=214 Identities=25% Similarity=0.372 Sum_probs=185.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++++. ++.+|+|+||+|++|++++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 377889988773 2469999999999999999999999999999999999876 5689999999876
Q ss_pred Chh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
... ..++.+||++|+..+++.+||+||+.|+...+. .+.++.++.++++++.++|.+..++.+ .+||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 431 234679999999999999999999998765432 233455667899999999988777764 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++||+++ ++.+.||++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998764 899999999986 57889999999986 78999887
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 218 ~ 218 (369)
T PRK11000 218 P 218 (369)
T ss_pred H
Confidence 4
No 124
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=6.1e-38 Score=340.51 Aligned_cols=215 Identities=27% Similarity=0.409 Sum_probs=179.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++... ....+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~~---------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDVK---------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCCC---------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 56788888774210 11269999999999999999999999999999999999865 46899999998764
Q ss_pred h--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
. ..+++.+||++|++.+++.+||+||+.+....+. ....+..+.++++++.+++.+..++.+ ..||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 2345679999999988898999999988654432 233445567889999999987777653 56999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999777999999999986 57788999999986 5776543
No 125
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=6.8e-38 Score=364.57 Aligned_cols=218 Identities=26% Similarity=0.358 Sum_probs=185.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|+ ++.+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 377889988773 3579999999999999999999999999999999999876 5689999999876
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ..+++.+||++|++.+++.+||+||+.++...+.. .....+..++.++++++.+++.+..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 43 34567799999999998999999999886432110 01112334567899999999998887764 57999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
|||||++|||||+++|+||||||||+|||+.++..++++|++++++|+|||+++|+++ ++.+.||++++|++ |++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999987 57789999999986 689999
Q ss_pred cCCC
Q 001108 1091 GPLG 1094 (1156)
Q Consensus 1091 g~~~ 1094 (1156)
|+..
T Consensus 221 G~~~ 224 (402)
T PRK09536 221 GPPA 224 (402)
T ss_pred cCHH
Confidence 9853
No 126
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-37 Score=343.11 Aligned_cols=216 Identities=27% Similarity=0.393 Sum_probs=180.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (239)
T cd03296 3 IEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDAT 67 (239)
T ss_pred EEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 67889988874 2469999999999999999999999999999999999865 46899999998754
Q ss_pred hh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCC-CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
.. ..++.++|++|++.+++.+||+||+.+....+... ........+.++++++.++|.+..+..+ ..||||||
T Consensus 68 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (239)
T cd03296 68 DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQR 142 (239)
T ss_pred cCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHH
Confidence 32 22456999999999888899999998875432110 0122334456788999999987766653 46999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 220 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGT 220 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecC
Confidence 9999999999999999999999999999999999999999765 899999999986 47788999999986 68888887
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 221 ~ 221 (239)
T cd03296 221 P 221 (239)
T ss_pred H
Confidence 4
No 127
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=8.8e-38 Score=342.57 Aligned_cols=213 Identities=26% Similarity=0.365 Sum_probs=179.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||++++|+++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 65 (232)
T cd03218 1 LRAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDIT 65 (232)
T ss_pred CeEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 35678887763 2469999999999999999999999999999999999876 46899999998753
Q ss_pred hh---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 936 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 936 ~~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
.. . .++.++|++|++.+++.+||+||+.+....+. .......+.++++++.+++.+..+.. +..||||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 137 (232)
T cd03218 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGG 137 (232)
T ss_pred cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHH
Confidence 21 1 23468999999999999999999988654332 22334455678899999998776665 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 138 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 215 (232)
T cd03218 138 ERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEG 215 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEe
Confidence 999999999999999999999999999999999999999999877999999999987 58889999999986 6888888
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
+.
T Consensus 216 ~~ 217 (232)
T cd03218 216 TP 217 (232)
T ss_pred CH
Confidence 74
No 128
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=6.5e-38 Score=360.47 Aligned_cols=203 Identities=25% Similarity=0.302 Sum_probs=178.1
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh---cc----cceEEEeccCCC
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TF----ARISGYCEQNDI 951 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~----~~~~gyv~q~~~ 951 (1156)
+.+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++... .+ ++.+|||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 34679999999999999999999999999999999999876 5689999999876531 22 568999999999
Q ss_pred CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001108 952 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031 (1156)
Q Consensus 952 ~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illL 1031 (1156)
+++.+||+||+.|...+. ..+.++..+++.++++.++|.+..++.+ ..|||||||||+|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986543 2344556778899999999988777764 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1032 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1032 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||||++||+.++..+++.++++.++ |+|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~ 214 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTP 214 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCH
Confidence 9999999999999999999998754 899999999986 57889999999985 699999974
No 129
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=360.88 Aligned_cols=214 Identities=24% Similarity=0.363 Sum_probs=187.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++..+. +..+|+|+||+|++||+++|+|||||||||||++|+|... +..|+|.++|.++
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 588999988763 2468999999999999999999999999999999999876 5689999999876
Q ss_pred Ch-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
.. ...+|.+|||+|++.++|.+||.||+.|+...+ ..+..+.++++.++++.++|.++.++.+ .+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 43 234578999999999999999999999986543 2344556678899999999998887763 57999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+ .|.|+|++||+++ ++...+|++++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 999999999999999999999999999999999999998865 4899999999986 68899999999986 69999998
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 234 ~ 234 (377)
T PRK11607 234 P 234 (377)
T ss_pred H
Confidence 5
No 130
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-37 Score=347.67 Aligned_cols=206 Identities=20% Similarity=0.225 Sum_probs=154.2
Q ss_pred CCCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEc
Q 001108 851 FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 930 (1156)
Q Consensus 851 ~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~ 930 (1156)
+.|..+.+.+|.+.|+.. .-+++.+++.+++.-...+++|+||+||||+++++.|..+ +..|-+.+.
T Consensus 358 ~~~p~l~i~~V~f~y~p~-----------~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~ 424 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPS-----------EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRH 424 (582)
T ss_pred CCCCeeEEEeeeccCCCc-----------chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeec
Confidence 345578888888777521 1258899999999999999999999999999999998654 356766654
Q ss_pred CccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 931 GYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 931 g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
+ +++++|..|...-+-.+.|.+- .+....+ +... ++.+++-+..+||..-.-. .+ +.+|||
T Consensus 425 ~--------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~--pG~~----~ee~r~hl~~~Gl~g~la~---~s-i~~LSG 485 (582)
T KOG0062|consen 425 P--------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF--PGKT----EEEIRRHLGSFGLSGELAL---QS-IASLSG 485 (582)
T ss_pred c--------cceecchhHhhhhHHHHHhHHH-HHHHHhC--CCCC----HHHHHHHHHhcCCCchhhh---cc-ccccCC
Confidence 3 3458898887554434444332 2222222 2222 3346677888898753221 11 467999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
|||-||++|.....+|.+|+|||||+.||..+-..+-+.|++. +..||++||+.++ +-..|+++++.++|...-..
T Consensus 486 GQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ie 561 (582)
T KOG0062|consen 486 GQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEF-ISSLCKELWVVEDGKVTPIE 561 (582)
T ss_pred cchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHH-HhhcCceeEEEcCCcEEeee
Confidence 9999999999999999999999999999999999999999875 4589999999875 77889999999987655555
Q ss_pred cC
Q 001108 1091 GP 1092 (1156)
Q Consensus 1091 g~ 1092 (1156)
|.
T Consensus 562 g~ 563 (582)
T KOG0062|consen 562 GG 563 (582)
T ss_pred cc
Confidence 54
No 131
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=5e-37 Score=376.92 Aligned_cols=217 Identities=28% Similarity=0.433 Sum_probs=180.9
Q ss_pred cCCCCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEE
Q 001108 849 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT 928 (1156)
Q Consensus 849 ~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~ 928 (1156)
.|.-++.++|+||+|.|+.. +..+|+|+|++|+|||.+||+|+||||||||+|+|.|+.. +..|+|.
T Consensus 465 ~~~~~g~I~~~nvsf~y~~~-----------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~ 531 (709)
T COG2274 465 LPKLQGEIEFENVSFRYGPD-----------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRIL 531 (709)
T ss_pred ccccCceEEEEEEEEEeCCC-----------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEE
Confidence 34455689999999999632 2369999999999999999999999999999999999877 5789999
Q ss_pred EcCccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-------ccc
Q 001108 929 ISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQS 998 (1156)
Q Consensus 929 i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~ 998 (1156)
+||+++++ ..+++++|||+|++.++. -|++||+.++. ++.+. +.+.++++..+..+. .++
T Consensus 532 ~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~----e~i~~A~~~ag~~~fI~~lP~gy~t 601 (709)
T COG2274 532 LDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATD----EEIIEAAQLAGAHEFIENLPMGYDT 601 (709)
T ss_pred ECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCH----HHHHHHHHHhCcHHHHHhccccccc
Confidence 99998654 568899999999998864 69999998752 33332 234455555554432 344
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 001108 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 999 ~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
.+|+. ..+||||||||++|||||+++|+||+||||||+||+++.+.|++.|.+.. +|+|+|+++|+++ .++.||++
T Consensus 602 ~v~E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrI 677 (709)
T COG2274 602 PVGEG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRI 677 (709)
T ss_pred ccccC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEE
Confidence 55554 46899999999999999999999999999999999999999999999985 5899999999986 57899999
Q ss_pred EEEecCcEEEEecCC
Q 001108 1079 FLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1079 ~~l~~Gg~~~~~g~~ 1093 (1156)
++|++ |+++..|+.
T Consensus 678 iVl~~-Gkiv~~gs~ 691 (709)
T COG2274 678 IVLDQ-GKIVEQGSH 691 (709)
T ss_pred EEccC-CceeccCCH
Confidence 99986 799999984
No 132
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=6.8e-38 Score=340.13 Aligned_cols=208 Identities=28% Similarity=0.403 Sum_probs=173.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++... ..+.+|+|+||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~---------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGGG---------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCCC---------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehh
Confidence 35778887774110 01469999999999999999999999999999999999875 56899999998754
Q ss_pred hh-------cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001108 936 QE-------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 936 ~~-------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 1008 (1156)
.. ..++.++|++|++.+++.+||+||+.+....+. ......++.++++++.++|.+..++.+ ..|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 21 124579999999999999999999998765432 222334567889999999987776653 469
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
|||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ +|+|||++||+++. + +.||++++|++|
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~v~~l~~G 216 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADRIIELRDG 216 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcEEEEeeCC
Confidence 99999999999999999999999999999999999999999999976 58999999999863 4 489999999875
No 133
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=2.3e-38 Score=391.41 Aligned_cols=255 Identities=27% Similarity=0.423 Sum_probs=204.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.+......||+.+++++.++ +++.... ...+..+++|+|+++.++.
T Consensus 295 ~~~~~~a~~ri~~~l~~~~~-----~~~~~~~--~~~~~~~I~f~~vsf~y~~--------------------------- 340 (567)
T COG1132 295 LQRASAAAERLFELLDEEPE-----VEDPPDP--LKDTIGSIEFENVSFSYPG--------------------------- 340 (567)
T ss_pred HHHHHHHHHHHHHHHcCCcc-----ccCCCCC--CCCCCCeEEEEEEEEEcCC---------------------------
Confidence 56778888999999888655 3332222 3445677999999999842
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
++++|+|+|++++||+.+||+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|+
T Consensus 341 ------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd 411 (567)
T COG1132 341 ------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQD 411 (567)
T ss_pred ------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEccc
Confidence 234999999999999999999999999999999999999998 9999999999887654 5789999997
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+|. .||+|||.++..- ...+.+.++++... .+.. +..|++++||
T Consensus 412 ~~LF~-~TI~~NI~~g~~~----at~eei~~a~k~a~---------------------------~~d~--I~~lp~g~dt 457 (567)
T COG1132 412 PLLFS-GTIRENIALGRPD----ATDEEIEEALKLAN---------------------------AHEF--IANLPDGYDT 457 (567)
T ss_pred ceeec-ccHHHHHhcCCCC----CCHHHHHHHHHHhC---------------------------hHHH--HHhCcccccc
Confidence 66665 8999999998521 12233444433321 1112 2345889999
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.||+++. .||||||||++||||++.+|+||+||||||+||+.+...|.+.++++. .++|+++ +.|.. .+...+|+
T Consensus 458 ~vge~G~-~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~ii-IaHRl-sti~~aD~ 532 (567)
T COG1132 458 IVGERGV-NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLI-IAHRL-STIKNADR 532 (567)
T ss_pred eecCCCc-cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEE-EeccH-hHHHhCCE
Confidence 9997655 599999999999999999999999999999999999999999998764 3457766 55554 45555999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|++++.|++++++.
T Consensus 533 IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 533 IIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999999876
No 134
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=8.5e-38 Score=336.82 Aligned_cols=207 Identities=30% Similarity=0.401 Sum_probs=175.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||++++|++++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 65 (208)
T cd03268 1 LKTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQ 65 (208)
T ss_pred CEEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCccc
Confidence 35678887763 2469999999999999999999999999999999999875 56899999998764
Q ss_pred h-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
. ...++.++|++|++.+++.+||+||+.+....+. . .++.++++++.+++.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 133 (208)
T cd03268 66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQ 133 (208)
T ss_pred chHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHH
Confidence 3 2334579999999988889999999988754331 1 1345788999999988777653 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||+||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||++. ++.+.+|++++|++ |++++.|
T Consensus 134 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998877999999999986 46778999999986 6777654
No 135
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=361.34 Aligned_cols=205 Identities=26% Similarity=0.387 Sum_probs=175.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||+
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~ 93 (369)
T PRK11000 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVA 93 (369)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999998765433 46799999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+..+... .+....++.+++.+||++..+..+ ..|
T Consensus 94 eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~lgL~~~~~~~~-----~~L 134 (369)
T PRK11000 94 ENMSFGLKLAGAKK----------------------------------EEINQRVNQVAEVLQLAHLLDRKP-----KAL 134 (369)
T ss_pred HHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCCh-----hhC
Confidence 99999865432110 001224677899999987776555 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+.. ++++|.++|+..++..++|+|++|++|+++
T Consensus 135 SgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~ 213 (369)
T PRK11000 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVA 213 (369)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999876533 445566788889999999999999999999
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
..|+++++.
T Consensus 214 ~~g~~~~i~ 222 (369)
T PRK11000 214 QVGKPLELY 222 (369)
T ss_pred EEcCHHHHH
Confidence 999998874
No 136
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3e-38 Score=312.04 Aligned_cols=210 Identities=25% Similarity=0.334 Sum_probs=180.2
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
..++|.|+|..- ==..+++|++||++||+||||||||||||+|+|... +.+|.|+|||.+...
T Consensus 3 ~L~~V~~~y~~~---------------~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~ 65 (231)
T COG3840 3 ALDDVRFSYGHL---------------PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTA 65 (231)
T ss_pred cccceEEeeCcc---------------eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCc
Confidence 456777777532 135678899999999999999999999999999887 568999999988654
Q ss_pred h-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001108 937 E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1156)
Q Consensus 937 ~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 1015 (1156)
. ...|=++.++|+.++|..+||.+|+-++..-.+ .. ..+.++.++.++..+||.++.+++. .+||||||||
T Consensus 66 ~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQR 137 (231)
T COG3840 66 SPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQR 137 (231)
T ss_pred CCcccCChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHH
Confidence 3 345668999999999999999999988743211 11 2445677999999999999999884 4699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1016 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
+++||+|+++-+||+||||+|.|||.-+..+..++.++++ ++.|++++||+|+ |.....|+++++++ |++.|.|+.
T Consensus 138 vALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 138 VALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 9999999999999999999999999999999999999975 4899999999998 79999999999997 799999984
No 137
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.5e-38 Score=311.57 Aligned_cols=201 Identities=24% Similarity=0.379 Sum_probs=173.2
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1156)
.+++.|++||++||+||||||||||||+|+|+..|. +|+|.+||++.....| +|-++.++|+.++|.++||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 478899999999999999999999999999999998 9999999999877665 478999999999999999999999
Q ss_pred HHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 001108 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1156)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1156)
++.. ++-+- . . +.+..++.++...||..+.+..- .+|||||
T Consensus 94 LGl~---P~LkL---~-a---------------------------~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGq 134 (231)
T COG3840 94 LGLS---PGLKL---N-A---------------------------EQREKVEAAAAQVGLAGFLKRLP-----GELSGGQ 134 (231)
T ss_pred ccCC---ccccc---C-H---------------------------HHHHHHHHHHHHhChhhHhhhCc-----cccCchH
Confidence 8753 22110 0 0 11234677889999998877554 4699999
Q ss_pred HHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcC
Q 001108 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1156)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~ 408 (1156)
||||++||+|+++-+|++||||+|+|||.-+.++...+.+++...+.|+++ ++|+.+++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~Tllm-VTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLM-VTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEE-EeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999998765555555 6666789999999999999999999999
Q ss_pred hhHHH
Q 001108 409 RELVL 413 (1156)
Q Consensus 409 ~~~~~ 413 (1156)
.+++.
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 98764
No 138
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.9e-38 Score=389.80 Aligned_cols=255 Identities=23% Similarity=0.340 Sum_probs=194.9
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCC-CcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDL-PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1156)
.++.....+|+.++++.+++. ........+. ...+|+|+||++.+..
T Consensus 314 ~~~~~~~~~ri~~~l~~~~~~------~~~~~~~~~~~~~~~i~~~~vsf~~~~-------------------------- 361 (588)
T PRK11174 314 KAQAVGAAESLVTFLETPLAH------PQQGEKELASNDPVTIEAEDLEILSPD-------------------------- 361 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCcc------cCCCccccCCCCCceEEEEeeEEeccC--------------------------
Confidence 467778888888888765431 0000111111 1347999999976421
Q ss_pred hcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcC
Q 001108 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1156)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q 233 (1156)
.+++|+|+|++++||+.++|+||||||||||+++|+|++ |+ +|+|.+||+++++... ++.++||+|
T Consensus 362 -------~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q 430 (588)
T PRK11174 362 -------GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQ 430 (588)
T ss_pred -------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecC
Confidence 124899999999999999999999999999999999999 87 9999999999887654 578999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 001108 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1156)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1156)
++.+| +.||+|||.++.. ....+.+.++++... .+.. +-.|+++.|
T Consensus 431 ~~~LF-~~TI~eNI~~g~~----~~~~eei~~al~~a~---------------------------l~~~--i~~lp~G~d 476 (588)
T PRK11174 431 NPQLP-HGTLRDNVLLGNP----DASDEQLQQALENAW---------------------------VSEF--LPLLPQGLD 476 (588)
T ss_pred CCcCC-CcCHHHHhhcCCC----CCCHHHHHHHHHHhC---------------------------HHHH--HHhcccccc
Confidence 77555 5799999998631 112222233222211 1111 234788899
Q ss_pred ccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 001108 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1156)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1156)
|.||+++. .||||||||++|||||+++|+||+||||||+||+.++..|.+.|+++. .++|+|+.. |.. ++...||
T Consensus 477 T~vge~G~-~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiIt-Hrl-~~i~~aD 551 (588)
T PRK11174 477 TPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVT-HQL-EDLAQWD 551 (588)
T ss_pred cccccCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEe-cCh-HHHHhCC
Confidence 99998765 699999999999999999999999999999999999999999998763 355666544 443 5678899
Q ss_pred eEEEEcCCeEEEEcChhHHHH
Q 001108 394 DIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~ 414 (1156)
+|++|++|++++.|+++++++
T Consensus 552 ~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 552 QIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred EEEEEeCCeEeecCCHHHHHh
Confidence 999999999999999999864
No 139
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.1e-37 Score=337.50 Aligned_cols=206 Identities=25% Similarity=0.341 Sum_probs=174.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ +++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 56788887763 12469999999999999999999999999999999999865 46899999998764
Q ss_pred hh------cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
.. .+++.++|++|++.+++.+|++||+.+....+. ......++.++++++.+++.+..+..+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 245679999999998889999999998754331 223344567889999999987666553 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++|
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999999999999999999999999999998777999999999986 577789999999865
No 140
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.3e-37 Score=340.04 Aligned_cols=214 Identities=23% Similarity=0.285 Sum_probs=177.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCC-----CCCeEEEEEEEc
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYITGNITIS 930 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~-----~~~~~~G~i~i~ 930 (1156)
++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|.. . +.+|+|.++
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~ 65 (227)
T cd03260 1 IELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLD 65 (227)
T ss_pred CEEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEEC
Confidence 35678877763 236999999999999999999999999999999999986 4 568999999
Q ss_pred CccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001108 931 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 931 g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~ 1005 (1156)
|.++.. ..+++.+||++|++.++ .+||+||+.+....+.. ....+.++.++++++.+++.+..+.... +
T Consensus 66 g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~ 139 (227)
T cd03260 66 GKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLH---A 139 (227)
T ss_pred CEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCC---c
Confidence 987532 23456799999998887 79999999887544321 1122245668899999999876555421 2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
.+||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ +|||++||+++ ++.+.||++++|++ |
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G 216 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-G 216 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999999877 99999999986 47788999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 217 ~i~~~g~~ 224 (227)
T cd03260 217 RLVEFGPT 224 (227)
T ss_pred EEEEecCc
Confidence 88888864
No 141
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.4e-38 Score=336.93 Aligned_cols=191 Identities=28% Similarity=0.373 Sum_probs=163.0
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCC-CCCCCHH
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH-SPFVTIY 959 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~-~~~~Tv~ 959 (1156)
+.+|+|+||+|++|++++|+|||||||||||++|+|... +.+|+|.++|.+......++.+||++|++.. +..+|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 468999999999999999999999999999999999876 5689999999876544455679999999742 3467999
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 001108 960 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039 (1156)
Q Consensus 960 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD 1039 (1156)
||+.+...... . ..+.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~~-----~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKELD-----A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhcC-----c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 99987643221 1 1245788999999988777663 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1040 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1040 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i 204 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAI 204 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999777999999999986 46778999999986 454
No 142
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-37 Score=341.13 Aligned_cols=217 Identities=24% Similarity=0.314 Sum_probs=181.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++.. .+...+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5678888776410 001369999999999999999999999999999999999876 46899999998764
Q ss_pred hh------cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
.. ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.++|.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAY-----PAQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCC
Confidence 31 234679999999999999999999988654332 23334456788999999998777665 35799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999986 47788999999986 6888
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
+.|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 88763
No 143
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-37 Score=356.33 Aligned_cols=206 Identities=27% Similarity=0.375 Sum_probs=175.6
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1156)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 45999999999999999999999999999999999999998 9999999998765432 35799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||+||+.|+....+... .+....++.+++.+||++..++.+
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-- 138 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTPK----------------------------------AEIKARVTELLELVGLSDKADRYP-- 138 (343)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999998765432110 001124567889999987776654
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
+.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.++||+|++|
T Consensus 139 ---~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 139 ---AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRE-LGLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999987653 3455666788889999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+++++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998774
No 144
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-37 Score=343.17 Aligned_cols=216 Identities=26% Similarity=0.309 Sum_probs=177.4
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|++++++. ++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYPN------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecCC------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccc
Confidence 56778777631 1469999999999999999999999999999999999865 468999999987542
Q ss_pred ------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhh-----CCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001108 937 ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 937 ------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr-----~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~ 1005 (1156)
...++.++|++|++.+++.+||+||+.+..... ...........+.+.++++.++|.+..+.. +
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 142 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----A 142 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----c
Confidence 224567999999999888999999998753210 000111123345678899999998766655 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
..||||||||++||+||+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.||++++|++
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~- 220 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD- 220 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999987 47779999999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 221 G~i~~~~~~ 229 (241)
T cd03256 221 GRIVFDGPP 229 (241)
T ss_pred CEEEeecCH
Confidence 688888874
No 145
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.5e-37 Score=340.63 Aligned_cols=214 Identities=22% Similarity=0.334 Sum_probs=181.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||++++||++||+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 56788887763 2469999999999999999999999999999999999865 56899999998764
Q ss_pred h-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 936 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 936 ~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
. ...++.++|++|++.+++.+||+||+.+...... .......++.+.++++.++|.+..+.. +..|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCH
Confidence 2 2335679999999988889999999987642111 123344456788999999998777665 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999987 46778999999986 688998
Q ss_pred cCC
Q 001108 1091 GPL 1093 (1156)
Q Consensus 1091 g~~ 1093 (1156)
|+.
T Consensus 218 g~~ 220 (240)
T PRK09493 218 GDP 220 (240)
T ss_pred CCH
Confidence 874
No 146
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-37 Score=349.59 Aligned_cols=218 Identities=22% Similarity=0.307 Sum_probs=180.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.|+... ...+.+|+||||+|++||++||+||||||||||+++|+|... +..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 67899988874210 012469999999999999999999999999999999999876 56899999998764
Q ss_pred h-----hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC--cccccccCCCCCCC
Q 001108 936 Q-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN--PLRQSLVGLPGVSG 1007 (1156)
Q Consensus 936 ~-----~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~~~~~~~~~ 1007 (1156)
. ...++.+|||+|++. .+...||+||+.|..... ..+.++..+.++++++.++|. +..++. +..
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 234567999999874 233579999999865432 234455667789999999996 555554 357
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
||||||||++||+||+.+|++|||||||+|||+.++..++++|++++++ |+|||++||+++ ++.+.||++++|++ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999986 46788999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13637 223 CELQGTP 229 (287)
T ss_pred EEEECCH
Confidence 8888874
No 147
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.5e-37 Score=337.45 Aligned_cols=221 Identities=35% Similarity=0.603 Sum_probs=180.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC-CCeEEEEEEEcCccC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISGYPK 934 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~-~~~~~G~i~i~g~~~ 934 (1156)
+.|+|++|.++... ..+.+|+|+||+|++||+++|+||||||||||+++|+|... +++.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNWN---------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecCc---------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 45788888874210 13579999999999999999999999999999999999764 124689999999877
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHH-HHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~-~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
.....++.++|++|++.+++.+||+||+.|..................+++ .++.+++.+..++. +..||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 544556779999999999999999999998765432221122222334555 88999988776654 357999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|.|||+++|++..++.+.||++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998777999999999984358899999999986 6887764
No 148
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.6e-37 Score=336.15 Aligned_cols=205 Identities=25% Similarity=0.367 Sum_probs=173.5
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
.++|+++.++ +++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 5678887763 12469999999999999999999999999999999999865 468999999987532
Q ss_pred ------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 937 ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 937 ------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
...++.++|++|++.+++.+|++||+.+....+. ...++.++.++++++.+++.+..+..+ .+|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1245679999999999999999999998754432 233444567889999999987766653 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++. .+.+.||++++|++|
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G 212 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERG 212 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999998777999999999986 466789999999864
No 149
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-37 Score=337.61 Aligned_cols=217 Identities=24% Similarity=0.322 Sum_probs=179.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++... ..+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~~~---------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEGS---------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCCC---------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 378899998874210 11469999999999999999999999999999999999875 5689999999876
Q ss_pred Chhc------c-cceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001108 935 KQET------F-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1156)
Q Consensus 935 ~~~~------~-~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~ 1007 (1156)
.... + ++.+||++|++.+++.+|++||+.+....+. ...++.++.++++++.++|.+..+.. +..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK---KKPAEINSRALEMLAAVGLEHRANHR-----PSE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhhCC-----hhh
Confidence 4311 1 2569999999988889999999998654321 22334456788999999998776665 356
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
||||||||++||+||+.+|+||||||||+|||+.++..+++.|+++.+ +|+|||++||+++. + +.+|++++|.+ |+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~-~~~~~~~~l~~-G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-A-KRMSRQLEMRD-GR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhhCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999875 58999999999863 4 45689999975 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
++..|++
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 8888875
No 150
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.3e-37 Score=354.88 Aligned_cols=205 Identities=27% Similarity=0.392 Sum_probs=176.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1156)
.+|+||||+|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+||
T Consensus 55 ~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv 131 (340)
T PRK13536 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTV 131 (340)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcH
Confidence 4999999999999999999999999999999999999998 999999999875432 24679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.|.....+... .+....++.+++.+||++..++.++ .
T Consensus 132 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~~-----~ 172 (340)
T PRK13536 132 RENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADARVS-----D 172 (340)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhCCChh-----h
Confidence 999997654432110 0011234567889999988887765 5
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||+||+.+|++|||||||+|||+.++.++++.|+++.. . +++|+.++|+..++.++||+|++|++|++
T Consensus 173 LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~-g~tilisSH~l~e~~~~~d~i~il~~G~i 250 (340)
T PRK13536 173 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLEAGRK 250 (340)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999864 3 44566678899999999999999999999
Q ss_pred EEEcChhHHHH
Q 001108 404 VYQGPRELVLE 414 (1156)
Q Consensus 404 v~~G~~~~~~~ 414 (1156)
+++|+++++..
T Consensus 251 ~~~g~~~~l~~ 261 (340)
T PRK13536 251 IAEGRPHALID 261 (340)
T ss_pred EEEcCHHHHHh
Confidence 99999998865
No 151
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-37 Score=340.71 Aligned_cols=213 Identities=27% Similarity=0.374 Sum_probs=179.2
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|++++++. .+.+|+|+||+|++|+++||+||||||||||+++|+|... +..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 67 (242)
T cd03295 2 EFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCc
Confidence 56788877641 1458999999999999999999999999999999999876 468999999987542
Q ss_pred ---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc--ccccccCCCCCCCCCHH
Q 001108 937 ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 937 ---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~~~~~~~~~LSgG 1011 (1156)
...++.++|++|++.+++.+||+||+.+...++. .+.+...+.+.++++.+++.+ ..+.. +..||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRY-----PHELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHH
Confidence 2345578999999999999999999988654431 233444567889999999985 55554 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQV 217 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999764 899999999986 47788999999986 688888
Q ss_pred cCC
Q 001108 1091 GPL 1093 (1156)
Q Consensus 1091 g~~ 1093 (1156)
|+.
T Consensus 218 ~~~ 220 (242)
T cd03295 218 GTP 220 (242)
T ss_pred cCH
Confidence 874
No 152
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.5e-37 Score=341.65 Aligned_cols=214 Identities=26% Similarity=0.359 Sum_probs=180.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+||||+|++|+++||+||||||||||+++|+|... +..|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 67889988773 2469999999999999999999999999999999999865 46899999997653
Q ss_pred h-----------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCC
Q 001108 936 Q-----------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 1004 (1156)
Q Consensus 936 ~-----------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~ 1004 (1156)
. ...++.++|++|++.+++.+|++||+.+...... ....+...+.++++++.++|.+..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 1234579999999988888999999987543211 122334456688999999998766654
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
+..||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999999877999999999986 47788999999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 688888874
No 153
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-37 Score=347.05 Aligned_cols=218 Identities=27% Similarity=0.399 Sum_probs=177.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-----ccceEEEEcCCCC-CC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDN-HI 238 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-----~~~~~~yv~Q~d~-~~ 238 (1156)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+|||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 35999999999999999999999999999999999999998 999999999886532 2467999999853 44
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc--ccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD--VCADTMV 316 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~v 316 (1156)
..+||+||+.|+....+.. + ++....++++++.+||+ +..|+
T Consensus 97 ~~~tv~e~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-- 140 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS-E---------------------------------EEIENRVKRAMNIVGLDYEDYKDK-- 140 (287)
T ss_pred ccccHHHHHHhHHHHCCCC-H---------------------------------HHHHHHHHHHHHHcCCCchhhccC--
Confidence 5689999999875432210 0 01123467789999996 44454
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
.++.|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++. .+++|+.++|+..++.++||+|+
T Consensus 141 ---~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 141 ---SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred ---CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 34579999999999999999999999999999999999999999999988653 34556668888899999999999
Q ss_pred EEcCCeEEEEcChhHHHH---HHHhcCCCCCC
Q 001108 397 LLSDGQIVYQGPRELVLE---FFASMGFRCPK 425 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 425 (1156)
+|++|++++.|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988753 23344555443
No 154
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.6e-37 Score=336.05 Aligned_cols=214 Identities=25% Similarity=0.391 Sum_probs=179.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++. +.+.+|+||||++++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 357788877631 11469999999999999999999999999999999999866 46899999998764
Q ss_pred h--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
. ..+++.+||++|++.+++.+|++||+.+....+. .......+.++++++.++|.+..+..+ ..||+|||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 3 2345679999999998889999999988754432 223334456889999999987766653 46999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||++||+||+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ .+.+.||++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999999875 699999999987 47778999999986 688888763
No 155
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-37 Score=333.92 Aligned_cols=199 Identities=29% Similarity=0.442 Sum_probs=166.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 4999999999999999999999999999999999999998 9999999998754332 45799999998888899999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.++....+... + +....++.+++.+||++..++.+ ..|
T Consensus 91 ~~l~~~~~~~~~~~------~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~L 131 (213)
T cd03259 91 ENIAFGLKLRGVPK------A----------------------------EIRARVRELLELVGLEGLLNRYP-----HEL 131 (213)
T ss_pred HHHHhHHHHcCCCH------H----------------------------HHHHHHHHHHHHcCChhhhhcCh-----hhC
Confidence 99988653221100 0 01123566788999987766655 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+||++|+.+|+++||||||+|||+.++..+.+.|++++... +++|+.++|+..++.++||+|++|++|+++
T Consensus 132 SgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 210 (213)
T cd03259 132 SGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQREL-GITTIYVTHDQEEALALADRIAVMNEGRIV 210 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999876533 445556788888999999999999999998
Q ss_pred EEc
Q 001108 405 YQG 407 (1156)
Q Consensus 405 ~~G 407 (1156)
+.|
T Consensus 211 ~~g 213 (213)
T cd03259 211 QVG 213 (213)
T ss_pred ecC
Confidence 765
No 156
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-37 Score=345.91 Aligned_cols=203 Identities=25% Similarity=0.306 Sum_probs=173.1
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh---c----ccceEEEeccCCC
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDI 951 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~q~~~ 951 (1156)
+++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.+.... . .++.+||++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 45679999999999999999999999999999999999876 4689999999875421 1 2356999999999
Q ss_pred CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001108 952 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031 (1156)
Q Consensus 952 ~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illL 1031 (1156)
+++.+||+||+.+...... .......+.++++++.++|.+..+..+ ..||||||||++||+||+.+|+||||
T Consensus 113 ~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9989999999988754321 223344566889999999988777664 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1032 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1032 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999998754 899999999986 47788999999986 688888874
No 157
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-37 Score=340.75 Aligned_cols=212 Identities=27% Similarity=0.368 Sum_probs=179.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 56788887763 2469999999999999999999999999999999999875 46899999998764
Q ss_pred hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001108 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1156)
Q Consensus 936 ~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 1015 (1156)
. ..+.+||++|++.+++.+||+||+.+....+. ....+..+.+.++++.++|.+..+.. +..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 3 22358999999988888999999988654331 22334456788999999998776655 35799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEecCC
Q 001108 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPL 1093 (1156)
Q Consensus 1016 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~-Gg~~~~~g~~ 1093 (1156)
++||+||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||+++ ++.+.||++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999987 57788999999985 5888887764
No 158
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.4e-37 Score=336.76 Aligned_cols=211 Identities=28% Similarity=0.421 Sum_probs=175.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||++++|+++||+||||||||||+++|+|... +..|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcC
Confidence 35678877663 2469999999999999999999999999999999999876 46899999997754
Q ss_pred hh----cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCCH
Q 001108 936 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 936 ~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ..++.++|++|++.+++.+|++||+.+...... ....++.+.++++.+ ++.+..+.. +..|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 135 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSG 135 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCH
Confidence 21 124569999999999999999999988754331 122344567778887 466555554 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |+++..
T Consensus 136 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 213 (222)
T cd03224 136 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLE 213 (222)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 47788999999986 688888
Q ss_pred cCC
Q 001108 1091 GPL 1093 (1156)
Q Consensus 1091 g~~ 1093 (1156)
|+.
T Consensus 214 ~~~ 216 (222)
T cd03224 214 GTA 216 (222)
T ss_pred CCH
Confidence 763
No 159
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-37 Score=345.51 Aligned_cols=215 Identities=24% Similarity=0.328 Sum_probs=180.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. +..+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYKD------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeCC------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 3788999888741 2359999999999999999999999999999999999876 4689999999876
Q ss_pred Ch---hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ...++.+||++|++. .++..||.||+.|..... ..+....++.+.++++.++|.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 43 223467999999863 345689999998864322 2333444567889999999988777663 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
|||||++||+||+.+|++|+|||||+|||+.++..++++|++++++|+|||++||+++ .+.+.||++++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 46788999999986 688998
Q ss_pred cCC
Q 001108 1091 GPL 1093 (1156)
Q Consensus 1091 g~~ 1093 (1156)
|+.
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 874
No 160
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-37 Score=334.40 Aligned_cols=204 Identities=29% Similarity=0.378 Sum_probs=171.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTG 90 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCcH
Confidence 4999999999999999999999999999999999999998 999999998764321 23579999999888999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.+.....+... .+....++.+++.+||++..++.++ .
T Consensus 91 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 131 (220)
T cd03265 91 WENLYIHARLYGVPG----------------------------------AERRERIDELLDFVGLLEAADRLVK-----T 131 (220)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCChh-----h
Confidence 999998754322100 0011245678999999877776554 6
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.... +++|+.++|+..++.+++|+|++|.+|++
T Consensus 132 LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~~G~i 210 (220)
T cd03265 132 YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF-GMTILLTTHYMEEAEQLCDRVAIIDHGRI 210 (220)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999876532 44566688888999999999999999999
Q ss_pred EEEcChhHH
Q 001108 404 VYQGPRELV 412 (1156)
Q Consensus 404 v~~G~~~~~ 412 (1156)
++.|+++++
T Consensus 211 ~~~~~~~~~ 219 (220)
T cd03265 211 IAEGTPEEL 219 (220)
T ss_pred EEeCChHHc
Confidence 999987653
No 161
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-37 Score=347.99 Aligned_cols=218 Identities=26% Similarity=0.300 Sum_probs=180.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|+.... ....+|+||||+|++||++||+|+||||||||+++|+|... +..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~~--------~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKTP--------FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCCc--------ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 678999998852110 11359999999999999999999999999999999999876 46899999998763
Q ss_pred h-------hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001108 936 Q-------ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1156)
Q Consensus 936 ~-------~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~ 1006 (1156)
. ..+++.+|||+|++. .+...||+||+.|+.... ..+.++.++.++++++.++|. +..+.. +.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 1 234567999999863 233479999999875432 233444556789999999996 555654 35
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
.|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++.++ |.|||++||+++ ++.+.||++++|++ |
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-G 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999764 999999999987 57789999999985 7
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (290)
T PRK13634 223 TVFLQGTP 230 (290)
T ss_pred EEEEECCH
Confidence 89999874
No 162
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-37 Score=336.71 Aligned_cols=209 Identities=30% Similarity=0.407 Sum_probs=171.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+||+
T Consensus 16 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 92 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVF 92 (239)
T ss_pred EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCHH
Confidence 4999999999999999999999999999999999999988 9999999988754332 35799999998888899999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+....+...+.. ..+....++.+++.+||.+..++.+ ..|
T Consensus 93 e~l~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 137 (239)
T cd03296 93 DNVAFGLRVKPRSERPP------------------------------EAEIRAKVHELLKLVQLDWLADRYP-----AQL 137 (239)
T ss_pred HHHhhhhhhccccccCC------------------------------HHHHHHHHHHHHHHcCChhhhhcCh-----hhC
Confidence 99998754321100000 0001123567788999987666554 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++...+ ++||.++|+..++.+++|+|++|++|+++
T Consensus 138 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (239)
T cd03296 138 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELH-VTTVFVTHDQEEALEVADRVVVMNKGRIE 216 (239)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999999998765334 44555777888899999999999999999
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
+.|+++++.
T Consensus 217 ~~~~~~~~~ 225 (239)
T cd03296 217 QVGTPDEVY 225 (239)
T ss_pred EecCHHHHh
Confidence 999988763
No 163
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5.9e-37 Score=343.01 Aligned_cols=215 Identities=19% Similarity=0.290 Sum_probs=181.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+||||+|++|++++|+||||||||||+++|+|... +..|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 478999988773 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Chh------cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001108 935 KQE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 935 ~~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 1008 (1156)
... ..++.++|++|++.+++.+||.||+.+...... ..+.+..++.+.++++.+++.+..+..+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 134569999999988889999999988643221 1223334456788999999988777653 569
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
|||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||++. ++.+.||++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999986 47788999999986 689
Q ss_pred EEecCC
Q 001108 1088 IYVGPL 1093 (1156)
Q Consensus 1088 ~~~g~~ 1093 (1156)
++.|+.
T Consensus 223 ~~~g~~ 228 (269)
T PRK11831 223 VAHGSA 228 (269)
T ss_pred EEeCCH
Confidence 998875
No 164
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.9e-38 Score=326.70 Aligned_cols=221 Identities=29% Similarity=0.413 Sum_probs=188.0
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc----ceEEEEcCCCCCC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHI 238 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1156)
....+++|||+++++|++++|+||||||||||+|+|+|.++|+ +|+|.++|.+++...+. .-++--+|...+|
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 4567999999999999999999999999999999999999999 99999999999887764 4578889999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
++|||.||+..++..+.. ..... .. |. ...+..+...++..+|+.+||.+.+|+..|+
T Consensus 92 ~~lTVlENv~va~~~~~~---~~~~l---------~~-~~---------~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~ 149 (250)
T COG0411 92 PGLTVLENVAVGAHARLG---LSGLL---------GR-PR---------ARKEEREARERARELLEFVGLGELADRPAGN 149 (250)
T ss_pred CCCcHHHHHHHHhhhhhh---hhhhh---------cc-cc---------chhhHHHHHHHHHHHHHHcCCchhhcchhhc
Confidence 999999999998764421 00000 00 00 0001123345678899999999999998875
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.|+++.+ .++++|+.|-|++.-++.+||||+||
T Consensus 150 -----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 150 -----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred -----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEEec
Confidence 999999999999999999999999999999999999999999999865 45677777999999999999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001108 399 SDGQIVYQGPRELVLE 414 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1156)
+.|+++.+|+++++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999864
No 165
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.7e-37 Score=351.14 Aligned_cols=206 Identities=28% Similarity=0.393 Sum_probs=176.6
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1156)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.+||++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999998 999999998875421 2457999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.|.+++.+.... +....++++++.+||++..++.++
T Consensus 83 v~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~~~----- 123 (302)
T TIGR01188 83 GRENLEMMGRLYGLPKD----------------------------------EAEERAEELLELFELGEAADRPVG----- 123 (302)
T ss_pred HHHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHcCChhHhCCchh-----
Confidence 99999987654431100 011245678999999987777664
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.. . +++|+.++|+..++.++||+|++|++|+
T Consensus 124 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-E-GVTILLTTHYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999998764 3 4556667888999999999999999999
Q ss_pred EEEEcChhHHHH
Q 001108 403 IVYQGPRELVLE 414 (1156)
Q Consensus 403 iv~~G~~~~~~~ 414 (1156)
+++.|+++++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999988765
No 166
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-37 Score=324.54 Aligned_cols=207 Identities=27% Similarity=0.375 Sum_probs=180.9
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh----cccceEEEeccCCCCCC
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQNDIHSP 954 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~~~~~ 954 (1156)
+...+++||||++++||++||+||||||||||+|+|+|... +..|+|.++|.++... ..+.-++.-+|...+++
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 67889999999999999999999999999999999999877 5689999999986542 23345788899999999
Q ss_pred CCCHHHHHHHHHHhhC--------CCC-CChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001108 955 FVTIYESLLFSAWLRL--------SPE-VDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 1025 (1156)
Q Consensus 955 ~~Tv~e~l~~~~~lr~--------~~~-~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~ 1025 (1156)
.|||.||+..++..+. +.. ...++..+++.++|+.++|.+.++...+ +||+||||||.|||||+.+
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 9999999998755331 111 1235566788899999999999998855 5999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1026 PSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1026 p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
|++|+||||.+||.+.....+.+.|+++.+ .|.||+++-||++. ++.+|||+++|+. |+++..|++.
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~-G~~IAeG~P~ 235 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNY-GEVIAEGTPE 235 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccC-CcCcccCCHH
Confidence 999999999999999999999999999987 47999999999986 8999999999986 6999999863
No 167
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.1e-37 Score=341.97 Aligned_cols=217 Identities=24% Similarity=0.281 Sum_probs=177.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ .++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 46778877763 12458999999999999999999999999999999999876 46899999998753
Q ss_pred h------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhh-----CCCCCChHHHHHHHHHHHHHcCCCcccccccCCCC
Q 001108 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 1004 (1156)
Q Consensus 936 ~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr-----~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~ 1004 (1156)
. ..+++.+||++|++.+++.+||+||+.+..... ..........++++.++++.+++.+..+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 123567999999998888999999997642110 000011223356688899999998776665
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.||++++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 3579999999999999999999999999999999999999999999998754 899999999987 46788999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 222 -G~i~~~~~~ 230 (243)
T TIGR02315 222 -GEIVFDGAP 230 (243)
T ss_pred -CEEEecCCH
Confidence 688888764
No 168
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-37 Score=348.41 Aligned_cols=218 Identities=25% Similarity=0.309 Sum_probs=180.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
+.++|+++.++... .....+|+||||+|++||++||+||||||||||+++|+|... +..|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecc
Confidence 67899999885210 011358999999999999999999999999999999999876 45799999886531
Q ss_pred ---------------------------hhcccceEEEeccCC-CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHH
Q 001108 936 ---------------------------QETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 987 (1156)
Q Consensus 936 ---------------------------~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l 987 (1156)
....++.+|||+|++ ..+...||+||+.|+.... ..+.++.++++.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 123456799999986 2334579999999875432 234455567789999
Q ss_pred HHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 001108 988 ELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1066 (1156)
Q Consensus 988 ~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1066 (1156)
+.++|. +..++. +..||||||||++||++|+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 566655 35799999999999999999999999999999999999999999999998779999999999
Q ss_pred CcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1067 PSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1067 ~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
++ ++.+.||++++|++ |++++.|+.
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 86 47789999999986 689999875
No 169
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-37 Score=331.82 Aligned_cols=209 Identities=33% Similarity=0.481 Sum_probs=175.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ +..+|+|+||++++| ++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 1 i~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccc
Confidence 35778887763 246999999999999 999999999999999999999866 46899999998754
Q ss_pred h--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
. ...++.++|++|++.+++.+||.||+.+....+. ...++..+.++++++.+++.+..+..+ ..||||||
T Consensus 65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 136 (211)
T cd03264 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMR 136 (211)
T ss_pred cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHH
Confidence 3 2345679999999999999999999988765432 222334566889999999987766653 56999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|+++ .+.+.+|++++|++ |++++.|
T Consensus 137 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 137 RRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999976 599999999986 46678999999986 5777654
No 170
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-38 Score=371.11 Aligned_cols=222 Identities=27% Similarity=0.432 Sum_probs=184.6
Q ss_pred CCccC-CCCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEE
Q 001108 846 GMVLP-FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT 924 (1156)
Q Consensus 846 ~~~~~-~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~ 924 (1156)
|...| .-.+.++|+||+|.||..+ +.++|+|+||+|+|||.+|||||||+||||+.++|..... |.+
T Consensus 455 G~~~p~~~~G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--Pts 522 (716)
T KOG0058|consen 455 GTLAPDHLQGVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTS 522 (716)
T ss_pred CccccccccceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCC
Confidence 43344 2456899999999998764 4679999999999999999999999999999999998766 678
Q ss_pred EEEEEcCccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHH-----HHHHHHHcCCCccc
Q 001108 925 GNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF-----IDEVMELVELNPLR 996 (1156)
Q Consensus 925 G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~-----v~~~l~~l~l~~~~ 996 (1156)
|.|.+||+|+++ ..+++++|+|.|+|.++. -||+|||.|+.. ..+.++.... +++.+ .++.+-.
T Consensus 523 G~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI--~~~p~gY 594 (716)
T KOG0058|consen 523 GRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFI--TNFPDGY 594 (716)
T ss_pred CeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHH--HhCcccc
Confidence 999999999764 457789999999999986 599999999753 2333322211 22222 2455567
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 001108 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1076 (1156)
Q Consensus 997 ~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d 1076 (1156)
|+.+|+.| ..||||||||++|||||++||+||||||+||+||+++...|.++|.++.+ ++|||+++|+.| ..+.+|
T Consensus 595 ~T~VGEkG-~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad 670 (716)
T KOG0058|consen 595 NTVVGEKG-SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHAD 670 (716)
T ss_pred ccccCCcc-ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--Hhhhcc
Confidence 88899876 47999999999999999999999999999999999999999999988864 699999999986 578899
Q ss_pred eEEEEecCcEEEEecC
Q 001108 1077 ELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1077 ~v~~l~~Gg~~~~~g~ 1092 (1156)
+|+++++ |+++..|.
T Consensus 671 ~Ivvi~~-G~V~E~G~ 685 (716)
T KOG0058|consen 671 QIVVIDK-GRVVEMGT 685 (716)
T ss_pred EEEEEcC-CeEEeccc
Confidence 9999986 79999985
No 171
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=4.4e-37 Score=332.59 Aligned_cols=205 Identities=24% Similarity=0.343 Sum_probs=173.4
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++ ++.+|+++||++++|+++||+||||||||||+++|+|... +..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 5678887764 2469999999999999999999999999999999999875 468999999987531
Q ss_pred -----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 937 -----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 937 -----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
...++.++|++|++.+++.+|++||+.+...... ....++..+.++++++.+++.+..+.. +..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHH
Confidence 2345679999999999989999999988643111 122334456788899999998776665 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++|
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g 211 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDG 211 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999877999999999986 477889999999864
No 172
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.7e-37 Score=334.22 Aligned_cols=199 Identities=27% Similarity=0.421 Sum_probs=164.4
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCC--CCCCH
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS--PFVTI 958 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~--~~~Tv 958 (1156)
+.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.. ..++.++|++|++.+. ..+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 469999999999999999999999999999999999865 46899999998653 2456799999998764 33799
Q ss_pred HHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001108 959 YESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037 (1156)
Q Consensus 959 ~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsg 1037 (1156)
+||+.+....... .....+..++.++++++.+++.+..++.+ ..||||||||++||+||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875432110 00112234456889999999987666653 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1038 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1038 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999999878999999999987 47788999999975 4 55544
No 173
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=8e-37 Score=347.52 Aligned_cols=205 Identities=29% Similarity=0.411 Sum_probs=173.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 18 ~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 94 (303)
T TIGR01288 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTV 94 (303)
T ss_pred EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcH
Confidence 4999999999999999999999999999999999999998 999999998864321 24679999999888999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.+.....+.... +....++.+++.+||++..++.++ .
T Consensus 95 ~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~ll~~~~l~~~~~~~~~-----~ 135 (303)
T TIGR01288 95 RENLLVFGRYFGMSTR----------------------------------EIEAVIPSLLEFARLESKADVRVA-----L 135 (303)
T ss_pred HHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHCCChhHhcCchh-----h
Confidence 9999875433221000 011234567889999888777664 5
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++. . +++|+.++|+..++.++||+|++|++|++
T Consensus 136 LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~til~~sH~~~~~~~~~d~i~~l~~G~i 213 (303)
T TIGR01288 136 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLESGRK 213 (303)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998764 3 45566678888999999999999999999
Q ss_pred EEEcChhHHHH
Q 001108 404 VYQGPRELVLE 414 (1156)
Q Consensus 404 v~~G~~~~~~~ 414 (1156)
++.|+++++..
T Consensus 214 ~~~g~~~~~~~ 224 (303)
T TIGR01288 214 IAEGRPHALID 224 (303)
T ss_pred EEEcCHHHHHh
Confidence 99999988754
No 174
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-37 Score=345.68 Aligned_cols=217 Identities=25% Similarity=0.347 Sum_probs=180.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.|+... ...+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67899999885210 011358999999999999999999999999999999999876 56899999998763
Q ss_pred h-------hcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 001108 936 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 1005 (1156)
Q Consensus 936 ~-------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~ 1005 (1156)
. ..+++.+|||+|++ .+++ .||.||+.|+.... ..+.++.++++.++++.++|. ++.+.. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 23456799999986 3444 69999999875432 233455667789999999996 455554 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.||++++|++ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999986 47788999999986 7
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 221 ~i~~~g~~ 228 (288)
T PRK13643 221 HIISCGTP 228 (288)
T ss_pred EEEEECCH
Confidence 99999875
No 175
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-37 Score=345.63 Aligned_cols=218 Identities=24% Similarity=0.351 Sum_probs=175.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-------CccceEEEEcCCCC-
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDN- 236 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-------~~~~~~~yv~Q~d~- 236 (1156)
.++|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 34999999999999999999999999999999999999998 99999999987531 12357999999852
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-cccccc
Q 001108 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1156)
.+...||+||+.|+....+... .+....++.+++.+||+ ...++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVSE----------------------------------EDAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCChhhhhCC
Confidence 4446799999998754322110 01112467789999996 445544
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++... .+++|+.++|+..++.++||+|
T Consensus 143 -----~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~-~g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 143 -----PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEE
Confidence 4569999999999999999999999999999999999999999999987653 3455666888899999999999
Q ss_pred EEEcCCeEEEEcChhHHHH---HHHhcCCCCCC
Q 001108 396 ILLSDGQIVYQGPRELVLE---FFASMGFRCPK 425 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 425 (1156)
++|++|++++.|+++++.+ .+...|..+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 9999999999999988742 33444554443
No 176
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.7e-37 Score=332.65 Aligned_cols=193 Identities=26% Similarity=0.380 Sum_probs=163.4
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh---hcccceEEEeccCCC-CCCCC
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDI-HSPFV 956 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~-~~~~~ 956 (1156)
+.+|+|+||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 469999999999999999999999999999999999865 468999999986532 234567999999974 35678
Q ss_pred CHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001108 957 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1156)
Q Consensus 957 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTs 1036 (1156)
|++||+.+....+ .......++.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998865432 1222334456788999999987666653 5699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1037 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1037 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999986 467779999999875
No 177
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-37 Score=319.34 Aligned_cols=212 Identities=26% Similarity=0.401 Sum_probs=177.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++..| ++.++|++|||++++||+++|+|+|||||||||++|+|... +.+|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecC
Confidence 5677777655 45789999999999999999999999999999999999876 45899999999875
Q ss_pred h----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCH
Q 001108 936 Q----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 936 ~----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~~~~~~~~LSg 1010 (1156)
. ...++-++||||....||.+||+|||..++..+.. ++..+..++++.+.+- |.+.++... ..|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~a-----G~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRA-----GTLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcc-----cCCCh
Confidence 4 23456799999999999999999999988765432 1111122566766663 455555553 36999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
||||.|+|||||+.+|++|+|||||.||-|.-.+.|.+.|+++.++ |.||+++-++... ..+.+||.++|.+ |++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~-Al~iaDr~yvle~-Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF-ALEIADRGYVLEN-GRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH-HHHhhCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 7799999998764 7789999999986 79999
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 218 ~G~~ 221 (237)
T COG0410 218 SGTA 221 (237)
T ss_pred ecCH
Confidence 9985
No 178
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-37 Score=344.52 Aligned_cols=215 Identities=27% Similarity=0.393 Sum_probs=181.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ +++.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 588999998874 12459999999999999999999999999999999999876 5689999999876
Q ss_pred C-----hhcccceEEEeccCCCC-CCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001108 935 K-----QETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 935 ~-----~~~~~~~~gyv~q~~~~-~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 1008 (1156)
. ...+++.+||++|++.. +...||+||+.+..... ..+.++..+.++++++.++|.+..+.. +..|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 3 12345679999999742 34579999998864332 223444456789999999998877765 3579
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
|||||||++|||||+.+|+||+|||||+|||+.++..++++|+++.++ |+|||+++|+++ ++.+.||++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999765 899999999986 46678999999986 689
Q ss_pred EEecCC
Q 001108 1088 IYVGPL 1093 (1156)
Q Consensus 1088 ~~~g~~ 1093 (1156)
++.|+.
T Consensus 221 ~~~g~~ 226 (283)
T PRK13636 221 ILQGNP 226 (283)
T ss_pred EEeCCH
Confidence 999985
No 179
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=338.73 Aligned_cols=215 Identities=20% Similarity=0.259 Sum_probs=180.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 478899988874 2469999999999999999999999999999999999876 4689999999765
Q ss_pred Ch----------------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-c
Q 001108 935 KQ----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-Q 997 (1156)
Q Consensus 935 ~~----------------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-~ 997 (1156)
.. ..+++.++|++|++.+++.+||+||+.+...... .......++++.++++.+++.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 2345679999999999999999999987542111 123344556788999999997653 4
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 001108 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077 (1156)
Q Consensus 998 ~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~ 1077 (1156)
.. +..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||+
T Consensus 148 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 43 3579999999999999999999999999999999999999999999999877999999999986 46778999
Q ss_pred EEEEecCcEEEEecCC
Q 001108 1078 LFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1078 v~~l~~Gg~~~~~g~~ 1093 (1156)
+++|++ |++++.|+.
T Consensus 222 i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 222 VIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999986 688888874
No 180
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-37 Score=349.31 Aligned_cols=218 Identities=25% Similarity=0.342 Sum_probs=180.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|+... .....+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 589999999885210 012359999999999999999999999999999999999876 5689999999765
Q ss_pred Ch-------------------hcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC
Q 001108 935 KQ-------------------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 993 (1156)
Q Consensus 935 ~~-------------------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~ 993 (1156)
.. ...++.+|||+|++ .+++ .||+||+.|+.... ..+.++..+++.++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 23456799999987 3444 59999998865322 223444556788999999996
Q ss_pred -cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHH
Q 001108 994 -PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1072 (1156)
Q Consensus 994 -~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~ 1072 (1156)
+..+.. +..||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455544 3579999999999999999999999999999999999999999999998777999999999986 477
Q ss_pred HhcCeEEEEecCcEEEEecCC
Q 001108 1073 EAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1073 ~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
+.||++++|++ |+++..|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 88999999986 689999874
No 181
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=6e-37 Score=335.12 Aligned_cols=217 Identities=24% Similarity=0.279 Sum_probs=172.5
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++... ....+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~~---------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTGG---------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCCC---------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 56788888774110 01369999999999999999999999999999999999865 56899999998764
Q ss_pred h------hcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001108 936 Q------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1156)
Q Consensus 936 ~------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~ 1006 (1156)
. ..+++.+||++|++ .+++.+||+||+.+....... ....+..+..++++++.+++. ...+.. +.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 3 23456799999998 466789999999886543321 111111122235788999985 455554 35
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 69999999999999999999999999999999999999999999999765 899999999986 46678999999986 6
Q ss_pred EEEEec
Q 001108 1086 QEIYVG 1091 (1156)
Q Consensus 1086 ~~~~~g 1091 (1156)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 776543
No 182
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=6.9e-37 Score=333.11 Aligned_cols=208 Identities=24% Similarity=0.307 Sum_probs=174.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ +++.+|+|+||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 56788888773 12368999999999999999999999999999999999875 56899999998653
Q ss_pred hh------cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
.. .+++.++|++|++.+++.+|++||+.+....+. ...++..+.++++++.+++.+..++. +..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG---ASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----chhCC
Confidence 21 135679999999988888999999988754431 23334455678899999998776665 35799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++|.|||++||+++ ++.+.+|++++|++| ++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G-~i 215 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDG-HL 215 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECC-EE
Confidence 99999999999999999999999999999999999999999999777899999999987 477789999999874 53
No 183
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-37 Score=334.78 Aligned_cols=205 Identities=30% Similarity=0.403 Sum_probs=172.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1156)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 5999999999999999999999999999999999999998 999999999876432 1457999999998899
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.++....+... ......++.+++.+||++..+..+
T Consensus 96 ~~t~~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 138 (233)
T cd03258 96 SRTVFENVALPLEIAGVPK----------------------------------AEIEERVLELLELVGLEDKADAYP--- 138 (233)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhcCh---
Confidence 9999999988654322100 001123567788999987766544
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++... +++|+.++|+..++.+++|++++|+
T Consensus 139 --~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 139 --AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL-GLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4699999999999999999999999999999999999999999999876532 4455557778888999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999987653
No 184
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-37 Score=337.20 Aligned_cols=214 Identities=27% Similarity=0.381 Sum_probs=180.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||++++|+++||+||||||||||+++|+|... +..|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67788887763 2469999999999999999999999999999999999875 56899999998754
Q ss_pred h----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 936 Q----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 936 ~----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
. ...++.++|++|++.+++.+||+||+.+...++. ....++.+..++++++.+++.+..+.. +..||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 2 1234579999999988888999999987643321 122334456788999999998766554 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||||++||+||+.+|++|+|||||+|||+.++..+++.++++.++|+|||+++|+++ ++.+.||++++|++ |++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeC
Confidence 999999999999999999999999999999999999999998877999999999986 57789999999986 6888888
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
+.
T Consensus 220 ~~ 221 (241)
T PRK10895 220 TP 221 (241)
T ss_pred CH
Confidence 74
No 185
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=343.54 Aligned_cols=224 Identities=27% Similarity=0.381 Sum_probs=179.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-------CccceEEEEcCCC-CC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHD-NH 237 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-------~~~~~~~yv~Q~d-~~ 237 (1156)
.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|+++|.++... ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 4999999999999999999999999999999999999998 99999999987521 1246799999985 24
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-ccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMV 316 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (1156)
+...||.||+.|+....+... .+...++.++++.+||. ...++
T Consensus 97 l~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~-- 140 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIPK----------------------------------EKAEKIAAEKLEMVGLADEFWEK-- 140 (288)
T ss_pred cccchHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhccC--
Confidence 445799999999864432110 01122456778899995 34443
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
.++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.++||+|+
T Consensus 141 ---~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 141 ---SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-S-GQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred ---CcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEE
Confidence 3457999999999999999999999999999999999999999999998754 3 4456667888899999999999
Q ss_pred EEcCCeEEEEcChhHHH---HHHHhcCCCCCCCCChHHHH
Q 001108 397 LLSDGQIVYQGPRELVL---EFFASMGFRCPKRKGVADFL 433 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~~ad~l 433 (1156)
+|++|+++++|+++++. +++...|+.+|.....++.+
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99999999999999874 34556677776654444333
No 186
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=8.9e-37 Score=335.52 Aligned_cols=214 Identities=27% Similarity=0.389 Sum_probs=172.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 4999999999999999999999999999999999999988 9999999998765432 24699999999999999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.++....+... ..+. .... ...+....++++++.+||++..++.+
T Consensus 91 tv~~~l~~~~~~~~~~~-------~~~~------~~~~-----------~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 91 TVLENVMVAAQARTGSG-------LLLA------RARR-----------EEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CHHHHHHHHHhhccccc-------cccc------cccc-----------cHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 99999998754321000 0000 0000 00011234677889999987666554
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++. .+ .+|+.++|+..++.++||+|++|++|
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~vsH~~~~~~~~~d~i~~l~~G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RG-ITVLLVEHDMDVVMSLADRVTVLDQG 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 46999999999999999999999999999999999999999999998764 44 45556788888999999999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
++++.|+++++.
T Consensus 220 ~i~~~~~~~~~~ 231 (236)
T cd03219 220 RVIAEGTPDEVR 231 (236)
T ss_pred EEEeecCHHHhc
Confidence 999999988763
No 187
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.2e-36 Score=336.70 Aligned_cols=214 Identities=23% Similarity=0.311 Sum_probs=177.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcCc
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISGY 932 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~ 932 (1156)
++++|+++.++ +..+|+|+||+|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56788888774 245899999999999999999999999999999999986521 12899999998
Q ss_pred cCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC----cccccccCCC
Q 001108 933 PKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGLP 1003 (1156)
Q Consensus 933 ~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~~~~ 1003 (1156)
++.. ...++.++|++|++.+++ .|++||+.+....+. .....+..+.++++++.++|. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 234567999999998888 999999998754431 122344456788999999997 444443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999876 489999999986 47788999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 688888874
No 188
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1e-36 Score=329.71 Aligned_cols=199 Identities=30% Similarity=0.424 Sum_probs=167.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 4899999999999999999999999999999999999988 9999999998754332 35799999998888899999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.++.+..+... .+....++.+++.+||.+..+..+ +.|
T Consensus 91 ~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 131 (213)
T cd03301 91 DNIAFGLKLRKVPK----------------------------------DEIDERVREVAELLQIEHLLDRKP-----KQL 131 (213)
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhCCh-----hhC
Confidence 99988754321100 001123567788999987777655 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++...+ ++|+.++|+..++.+++|+|++|++|+++
T Consensus 132 S~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~~sH~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 132 SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLG-TTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998765334 45555778888999999999999999999
Q ss_pred EEc
Q 001108 405 YQG 407 (1156)
Q Consensus 405 ~~G 407 (1156)
+.|
T Consensus 211 ~~g 213 (213)
T cd03301 211 QIG 213 (213)
T ss_pred ecC
Confidence 876
No 189
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-37 Score=344.95 Aligned_cols=217 Identities=22% Similarity=0.326 Sum_probs=179.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.|+.... ..+.+|+||||+|++||++||+||||||||||+++|+|... +..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~ 72 (286)
T PRK13646 3 IRFDNVSYTYQKGTP--------YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEECCCCc--------cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 678999988852110 11359999999999999999999999999999999999876 46899999998763
Q ss_pred h-------hcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 001108 936 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 1005 (1156)
Q Consensus 936 ~-------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~ 1005 (1156)
. ..+++.+|||+|++ .+++ .||.||+.|..... ..+.++..+.+.++++.++|. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----P 143 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 23456799999986 3444 59999999875432 233445566788999999996 566654 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
..||||||||++||+||+.+|+||+|||||+|||+.++..++++|+++.+ .|+|||++||+++ ++.+.+|++++|++
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~- 221 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE- 221 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 57999999999999999999999999999999999999999999999975 4999999999986 47788999999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 222 G~i~~~g~~ 230 (286)
T PRK13646 222 GSIVSQTSP 230 (286)
T ss_pred CEEEEECCH
Confidence 689999874
No 190
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=6.4e-37 Score=331.99 Aligned_cols=194 Identities=25% Similarity=0.384 Sum_probs=163.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 4999999999999999999999999999999999999998 999999999875432 2357999999998899
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.++.+..+... .+....++.+++.+||++..++.+
T Consensus 94 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 136 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIGVPP----------------------------------RDANERVSAALEKVGLEGKAHALP--- 136 (216)
T ss_pred cccHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh---
Confidence 9999999998754322100 001123567889999987766554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.++||+|++|+
T Consensus 137 --~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l~ 212 (216)
T TIGR00960 137 --MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-R-GTTVLVATHDINLVETYRHRTLTLS 212 (216)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 46999999999999999999999999999999999999999999998754 3 4456667888889999999999999
Q ss_pred CCeE
Q 001108 400 DGQI 403 (1156)
Q Consensus 400 ~G~i 403 (1156)
+|++
T Consensus 213 ~G~i 216 (216)
T TIGR00960 213 RGRL 216 (216)
T ss_pred CCcC
Confidence 9974
No 191
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-36 Score=330.26 Aligned_cols=201 Identities=29% Similarity=0.397 Sum_probs=168.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++||+|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 45999999999999999999999999999999999999988 9999999988753 346799999998888889999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.++....+... ......++.+++.+||.+..+..+ ..|
T Consensus 92 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------------------------------AEARERAEELLELVGLSGFENAYP-----HQL 132 (220)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc-----ccC
Confidence 99998754322100 001123567888999987666554 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc--CCe
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~--~G~ 402 (1156)
||||||||+||+||+.+|+++||||||+|||+.++..+++.|+++....+ ++|+.++|+..++.+++|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETG-KTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 99999999999999999999999999999999999999999998754334 455557788888999999999999 799
Q ss_pred EEEEcChh
Q 001108 403 IVYQGPRE 410 (1156)
Q Consensus 403 iv~~G~~~ 410 (1156)
+++.++.+
T Consensus 212 i~~~~~~~ 219 (220)
T cd03293 212 IVAEVEVD 219 (220)
T ss_pred EEEEEEec
Confidence 99988653
No 192
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-37 Score=343.33 Aligned_cols=216 Identities=24% Similarity=0.304 Sum_probs=182.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++.. ..+.+|+|||++|++||++||+|+||||||||+++|+|... +..|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 37889999887421 12358999999999999999999999999999999999876 5689999999876
Q ss_pred Ch---hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ...++.+||++|++. .++..||+||+.|..... ..+.++.++.++++++.++|.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 42 234567999999973 567789999999875432 2344455667899999999988777663 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++||+||+.+|+||+|||||+|||+.++..+++.|++++++ |+|||++||+++. + ..||++++|++ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 9999999999863 4 68999999986 68888
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13650 221 TSTP 224 (279)
T ss_pred ECCH
Confidence 8875
No 193
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.8e-36 Score=332.87 Aligned_cols=212 Identities=26% Similarity=0.381 Sum_probs=177.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++++ ++.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 56788887763 2469999999999999999999999999999999999875 46899999998753
Q ss_pred h--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
. ....+.++|++|++.+++.+|++||+.+.+..+ ....+...+.+.++++.++|.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 2 122356999999998888999999998765443 1223334556788999999987766653 46999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
||++|||||+.+|++|+|||||+|||+.++..+++.|+++++ +|+|||+++|+++. + +.+|++++|++ |++++.|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999874 58999999999863 4 45999999986 68888876
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 4
No 194
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-37 Score=311.54 Aligned_cols=207 Identities=30% Similarity=0.439 Sum_probs=175.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc---ceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~lT 242 (1156)
.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|++++||.+++.+.+. +.-+..+|+..+-+..|
T Consensus 15 ~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 4999999999999999999999999999999999999998 99999999999888763 56789999988877889
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+|-+.+++.-.+.+... .+...+++..|...++.+.+. +..+
T Consensus 92 v~eVV~mGr~p~~~g~~~--------------------------------~e~~~i~~~ala~~d~~~la~-----R~y~ 134 (259)
T COG4559 92 VQEVVQMGRIPHRSGREP--------------------------------EEDERIAAQALAATDLSGLAG-----RDYR 134 (259)
T ss_pred HHHHHHhcccccccCCCc--------------------------------hhhHHHHHHHHHHcChhhhhc-----cchh
Confidence 999999987544222110 011234666777778877665 3445
Q ss_pred CCChhHHHHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 323 GISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~------~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
.|||||||||.+||.|+. ++++||||||||+||......+++..+++++. + ..|+.+.|+..-+..+||+|+
T Consensus 135 ~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g-~~V~~VLHDLNLAA~YaDriv 212 (259)
T COG4559 135 TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-G-GAVLAVLHDLNLAAQYADRIV 212 (259)
T ss_pred hcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-C-CcEEEEEccchHHHHhhheee
Confidence 799999999999999975 45689999999999999999999999999874 3 566678899999999999999
Q ss_pred EEcCCeEEEEcChhHHHH
Q 001108 397 LLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1156)
+|.+||++..|++++++.
T Consensus 213 ll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 213 LLHQGRVIASGSPQDVLT 230 (259)
T ss_pred eeeCCeEeecCCHHHhcC
Confidence 999999999999998763
No 195
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-36 Score=337.51 Aligned_cols=206 Identities=21% Similarity=0.278 Sum_probs=176.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 488999998874 2458999999999999999999999999999999999876 4689999998765
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
. ..++.++|++|++.+++.+||+||+.+... . ..++.+.++++.++|.+..+.. +..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 3 235679999999998888999999987521 0 1234578899999998776665 3579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|++||++|+.+|++|||||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999864 4899999999986 46788999999986 688888764
No 196
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.3e-36 Score=330.73 Aligned_cols=210 Identities=25% Similarity=0.332 Sum_probs=172.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++.. .+.+.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 5678888877421 012469999999999999999999999999999999999876 46899999998753
Q ss_pred hh---c---cc-ceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001108 936 QE---T---FA-RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 936 ~~---~---~~-~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 1008 (1156)
.. . ++ +.++|++|++.+++.+|++||+.+....+. ....+..+.+.++++.+++.+..+..+ ..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 21 1 22 569999999988889999999988654331 122333456788999999987766653 469
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
|||||||++|||+|+.+|+||||||||+|||+.++..+++.|+++++ .|+|||++||+++. + +.+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL-A-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-hhcCEEEEEeC-CEe
Confidence 99999999999999999999999999999999999999999999875 48999999999863 4 56899999986 454
No 197
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=8.4e-37 Score=333.68 Aligned_cols=203 Identities=25% Similarity=0.367 Sum_probs=168.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC-----CCCCCceeEEEEcCccCCCcC-----ccceEEEEcCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL-----DPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHD 235 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~-----~~~~~~~G~V~~nG~~~~~~~-----~~~~~~yv~Q~d 235 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.+ +|. +|+|.++|.++.... .++.++|++|++
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 4999999999999999999999999999999999999 777 999999999875432 245799999998
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 001108 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1156)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1156)
.++ .+||+||+.++....+.... .+....++.+++.+||.+..+..
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHGIKLK---------------------------------EELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred hhc-cccHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCChHHhcc
Confidence 777 89999999987543221000 00112356678899998765554
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
+. +..|||||||||+||++|+.+|+++||||||+|||+.++..+++.|+++++ . ++||.++|+..++.++||+|
T Consensus 137 ~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i 210 (227)
T cd03260 137 LH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADRT 210 (227)
T ss_pred CC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCEE
Confidence 31 357999999999999999999999999999999999999999999998754 3 55666788888999999999
Q ss_pred EEEcCCeEEEEcChhH
Q 001108 396 ILLSDGQIVYQGPREL 411 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~ 411 (1156)
++|++|++++.|++++
T Consensus 211 ~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 211 AFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEeCCEEEEecCccc
Confidence 9999999999998764
No 198
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.6e-36 Score=332.58 Aligned_cols=204 Identities=22% Similarity=0.383 Sum_probs=171.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKL 90 (232)
T ss_pred EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCccccccC
Confidence 4999999999999999999999999999999999999998 9999999988754332 24699999999899999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.+.....+.. . .+....++.+++.+||++..++.+
T Consensus 91 tv~~~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 131 (232)
T cd03218 91 TVEENILAVLEIRGLS-K---------------------------------KEREEKLEELLEEFHITHLRKSKA----- 131 (232)
T ss_pred cHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 9999998864322110 0 001124567888999987666554
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.+++|+|++|++|
T Consensus 132 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~G 209 (232)
T cd03218 132 SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-R-GIGVLITDHNVRETLSITDRAYIIYEG 209 (232)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998764 3 445566778888999999999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
++++.|+.+++.
T Consensus 210 ~i~~~~~~~~~~ 221 (232)
T cd03218 210 KVLAEGTPEEIA 221 (232)
T ss_pred eEEEEeCHHHhh
Confidence 999999987653
No 199
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2e-36 Score=343.64 Aligned_cols=204 Identities=27% Similarity=0.396 Sum_probs=175.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1156)
.+|+|+||++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.+||++|++.+++.+||
T Consensus 16 ~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv 92 (301)
T TIGR03522 16 NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYV 92 (301)
T ss_pred EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcH
Confidence 4999999999999999999999999999999999999998 999999998875422 24679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.|.+++.+... .+....++.+++.+||++..++.++ .
T Consensus 93 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 133 (301)
T TIGR03522 93 REYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKIG-----Q 133 (301)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCchh-----h
Confidence 999998765543110 0011235678999999988876654 6
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||+||+++|++|||||||+|||+.++..+++.|+++. .+ ++|+.++|...++.++||+|++|++|++
T Consensus 134 LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~--~~-~tiii~sH~l~~~~~~~d~i~~l~~G~i 210 (301)
T TIGR03522 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--KD-KTIILSTHIMQEVEAICDRVIIINKGKI 210 (301)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc--CC-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999874 34 5566678889999999999999999999
Q ss_pred EEEcChhHHHH
Q 001108 404 VYQGPRELVLE 414 (1156)
Q Consensus 404 v~~G~~~~~~~ 414 (1156)
++.|+.+++..
T Consensus 211 ~~~g~~~~~~~ 221 (301)
T TIGR03522 211 VADKKLDELSA 221 (301)
T ss_pred EEeCCHHHHHH
Confidence 99999998755
No 200
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-37 Score=335.37 Aligned_cols=212 Identities=22% Similarity=0.335 Sum_probs=177.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 478899988774 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Chh----cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCC
Q 001108 935 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 935 ~~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~~~~~~~~LS 1009 (1156)
... ..++.++|++|++.+++.+||.||+.+..... ..+...+.++++++.+ ++.+..+.. +..||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 431 23457999999999888899999998764221 1122334567777877 466555543 35799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
||||||++||++|+.+|+||+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999999877999999999986 57889999999986 68999
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 218 ~~~~ 221 (237)
T PRK11614 218 EDTG 221 (237)
T ss_pred eCCH
Confidence 9875
No 201
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2e-36 Score=329.65 Aligned_cols=208 Identities=25% Similarity=0.340 Sum_probs=177.4
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccc
Confidence 5677777663 2469999999999999999999999999999999999865 568999999987643
Q ss_pred hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 001108 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL 1016 (1156)
Q Consensus 937 ~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl 1016 (1156)
.. .+.++|++|++.+++.+|++||+.+....+. .. +..+.++++.+++.+..+..+ ..||||||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHH
Confidence 22 2569999999988888999999987654432 11 235778999999988777653 46999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1017 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1017 ~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
+||+||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 9999999999999999999999999999999999999877999999999987 47788999999986 6899988763
No 202
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=341.51 Aligned_cols=213 Identities=23% Similarity=0.320 Sum_probs=179.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ +++.+|+||||+|++||++||+|||||||||||++|+|... +..|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 56788887763 12358999999999999999999999999999999999876 56899999998764
Q ss_pred h----hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 936 Q----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 936 ~----~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
. ...++.+||++|++. .+...|+.||+.|..... ..+..+.++.++++++.++|.+..+..+ ..||+
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 234567999999975 356689999998865432 2234445567889999999988777653 57999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
|||||++||+||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++ +.||++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 35 67999999986 688999
Q ss_pred cCC
Q 001108 1091 GPL 1093 (1156)
Q Consensus 1091 g~~ 1093 (1156)
|+.
T Consensus 217 g~~ 219 (274)
T PRK13644 217 GEP 219 (274)
T ss_pred CCH
Confidence 875
No 203
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=5.2e-37 Score=387.30 Aligned_cols=253 Identities=24% Similarity=0.328 Sum_probs=195.1
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++....++|+.++++.++|. .. +....+.....|+|+||++.+..
T Consensus 418 ~~~~~~~~~ri~~~l~~~~e~-----~~--~~~~~~~~~~~I~~~nvsf~Y~~--------------------------- 463 (686)
T TIGR03797 418 ILAVIPLWERAKPILEALPEV-----DE--AKTDPGKLSGAIEVDRVTFRYRP--------------------------- 463 (686)
T ss_pred HHHHHHHHHHHHHHhcCCccc-----cc--CcCCCCCCCceEEEEEEEEEcCC---------------------------
Confidence 567778888888887765541 00 00001112347999999999842
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
...++|+|+|++++||+.++|+||||||||||+++|+|+++|+ +|+|.+||+++++..+ ++.++||+|+
T Consensus 464 -----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 535 (686)
T TIGR03797 464 -----DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQN 535 (686)
T ss_pred -----CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccC
Confidence 1134899999999999999999999999999999999999998 9999999999887654 5789999997
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+| +.|++|||.++.. ...+.+.++++. .++ +.. ...|+++.||
T Consensus 536 ~~lf-~gTI~eNi~~~~~-----~~~e~i~~al~~---a~l------------------------~~~--i~~lp~G~dt 580 (686)
T TIGR03797 536 GRLM-SGSIFENIAGGAP-----LTLDEAWEAARM---AGL------------------------AED--IRAMPMGMHT 580 (686)
T ss_pred CccC-cccHHHHHhcCCC-----CCHHHHHHHHHH---cCc------------------------HHH--HHhccccccc
Confidence 7655 5799999998632 111222222221 111 111 2246788999
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ .+||||||||++|||||+++|++|+||||||+||+.++.+|.+.|+++ ++|+|+ ++|. .++.+.+|+
T Consensus 581 ~ige~G-~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~Ii-ItHr-~~~i~~~D~ 653 (686)
T TIGR03797 581 VISEGG-GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIV-IAHR-LSTIRNADR 653 (686)
T ss_pred cccCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEE-EecC-hHHHHcCCE
Confidence 999875 479999999999999999999999999999999999999999999863 355555 4554 366788999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++++|+++++++
T Consensus 654 Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 654 IYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999864
No 204
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=342.93 Aligned_cols=218 Identities=24% Similarity=0.295 Sum_probs=179.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++... ...+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13641 3 IKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHIT 72 (287)
T ss_pred EEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67889988874210 001358999999999999999999999999999999999876 56899999998753
Q ss_pred h-------hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001108 936 Q-------ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1156)
Q Consensus 936 ~-------~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~ 1006 (1156)
. ...++.+||++|++. .+..+||.||+.|..... ....++..+.++++++.++|. +..+.. +.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (287)
T PRK13641 73 PETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----PF 144 (287)
T ss_pred cccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----cc
Confidence 2 223457999999973 233589999998865432 123445556788999999997 566665 35
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
.||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++|.|||++||+++ ++.+.||++++|++ |+
T Consensus 145 ~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~ 222 (287)
T PRK13641 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-GK 222 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999777999999999987 47789999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13641 223 LIKHASP 229 (287)
T ss_pred EEEeCCH
Confidence 8888874
No 205
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7e-38 Score=314.33 Aligned_cols=210 Identities=22% Similarity=0.377 Sum_probs=181.3
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc----ceEEEEcCCCCCC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHI 238 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1156)
+++.+++|||+.+++||+++|+|||||||||.+.++.|+..|+ +|+|.+||.+++.+... .-+||+||++..|
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 4567999999999999999999999999999999999999999 99999999999887653 3589999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
-.+||+|||.-....+....+ ..+.+...+.+|+.|.+.++++..-.
T Consensus 92 r~LtV~dNi~~vlE~~~~d~~--------------------------------~~~~~~~l~~LL~ef~i~hlr~~~a~- 138 (243)
T COG1137 92 RKLTVEDNIMAVLEIREKDLK--------------------------------KAERKEELDALLEEFHITHLRDSKAY- 138 (243)
T ss_pred hcCcHHHHHHHHHhhhhcchh--------------------------------HHHHHHHHHHHHHHhchHHHhcCccc-
Confidence 999999999876644321100 01123457889999999999986543
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
.||||||+|+-|||||+.+|+.++||||++|+||-+..+|.+.++.+.. .+.-|+..-|+..|+...|||.+++
T Consensus 139 ----sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREtL~i~dRaYIi 212 (243)
T COG1137 139 ----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRETLDICDRAYII 212 (243)
T ss_pred ----ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHHHhhhheEEEE
Confidence 6999999999999999999999999999999999999999999998864 3444555788999999999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001108 399 SDGQIVYQGPRELVLE 414 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1156)
++|++..+|+++++.+
T Consensus 213 ~~G~vla~G~p~ei~~ 228 (243)
T COG1137 213 SDGKVLAEGSPEEIVN 228 (243)
T ss_pred ecCeEEecCCHHHHhc
Confidence 9999999999998864
No 206
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.8e-36 Score=336.21 Aligned_cols=214 Identities=23% Similarity=0.313 Sum_probs=180.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 35788888774 2469999999999999999999999999999999999876 46899999997653
Q ss_pred h----------------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccc
Q 001108 936 Q----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999 (1156)
Q Consensus 936 ~----------------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ 999 (1156)
. ...++.++|++|++.+++..|+.||+.+...... ........+.++++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 2 1235679999999999999999999987543211 123344456788999999998776665
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeE
Q 001108 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 1000 ~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
+..||||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++...+|++
T Consensus 144 -----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 -----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred -----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 477889999
Q ss_pred EEEecCcEEEEecCC
Q 001108 1079 FLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1079 ~~l~~Gg~~~~~g~~ 1093 (1156)
++|++ |++++.|+.
T Consensus 218 ~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 218 CFFDK-GRIVEQGKP 231 (252)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 688888874
No 207
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2e-36 Score=346.24 Aligned_cols=229 Identities=21% Similarity=0.233 Sum_probs=184.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++.+++............+...+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEEC
Confidence 47899998887532110000000123579999999999999999999999999999999999876 4589999999876
Q ss_pred Chh------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 001108 935 KQE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 1005 (1156)
Q Consensus 935 ~~~------~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~ 1005 (1156)
... .+++.++||+|++ .++|.+||.||+.+...... ...+.++.++.+.++++.++|. ...++. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 431 2356799999997 57889999999988654331 1234455667788999999995 345554 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
..||||||||++|||||+.+|++|||||||+|||+.++..|+++|+++.++ |.|||++|||++ .+.+.+|++++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 999999999986 46778999999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 238 G~ive~g~~ 246 (331)
T PRK15079 238 GHAVELGTY 246 (331)
T ss_pred CEEEEEcCH
Confidence 699999874
No 208
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-36 Score=333.84 Aligned_cols=213 Identities=23% Similarity=0.316 Sum_probs=179.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
+.++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 67888888774 2469999999999999999999999999999999999876 56899999998642
Q ss_pred ---------hhcccceEEEeccCCCCCCCCCHHHHHHHH-HHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001108 936 ---------QETFARISGYCEQNDIHSPFVTIYESLLFS-AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 936 ---------~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~-~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~ 1005 (1156)
....++.++|++|++.+++.+|+.||+.+. .... .....+..+.+.++++.+++.+..+..+
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP----- 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 112345799999999999999999999753 2221 1223334566888999999987777653
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||||||||++|||||+.+|+||+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++.+.+|++++|.+ |
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g 217 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999777999999999986 46778999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (242)
T PRK11124 218 HIVEQGDA 225 (242)
T ss_pred EEEEeCCH
Confidence 88888874
No 209
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.4e-36 Score=330.32 Aligned_cols=203 Identities=31% Similarity=0.437 Sum_probs=170.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc--CccceEEEEcCCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lT 242 (1156)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 35999999999999999999999999999999999999998 99999999987532 12456999999988888999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.+..+..+.... +....++++++.+||++..++.++
T Consensus 92 v~~~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~~~----- 132 (220)
T cd03263 92 VREHLRFYARLKGLPKS----------------------------------EIKEEVELLLRVLGLTDKANKRAR----- 132 (220)
T ss_pred HHHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHcCCHHHHhChhh-----
Confidence 99999886543321100 011235667889999877776554
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.. + .+|+.++|+..++.+.+|++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998753 3 556667788888889999999999999
Q ss_pred EEEEcChhHH
Q 001108 403 IVYQGPRELV 412 (1156)
Q Consensus 403 iv~~G~~~~~ 412 (1156)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988764
No 210
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.7e-36 Score=330.06 Aligned_cols=202 Identities=25% Similarity=0.416 Sum_probs=167.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 4999999999999999999999999999999999999998 9999999988755432 35699999999899999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHc-CCcccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGDEM 320 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~~ 320 (1156)
||+||+.++....+ .. + ....++.+++.+ ++++..++.+
T Consensus 91 t~~~~l~~~~~~~~--~~-----~-----------------------------~~~~~~~~l~~~~~l~~~~~~~~---- 130 (222)
T cd03224 91 TVEENLLLGAYARR--RA-----K-----------------------------RKARLERVYELFPRLKERRKQLA---- 130 (222)
T ss_pred cHHHHHHHHhhhcC--ch-----h-----------------------------HHHHHHHHHHHHHhhhhhhhCch----
Confidence 99999988753321 00 0 011233455666 4665555444
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
+.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.+++|+|++|++
T Consensus 131 -~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~ 207 (222)
T cd03224 131 -GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-E-GVTILLVEQNARFALEIADRAYVLER 207 (222)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhccEEEEeeC
Confidence 46999999999999999999999999999999999999999999998754 3 44555677888899999999999999
Q ss_pred CeEEEEcChhHHH
Q 001108 401 GQIVYQGPRELVL 413 (1156)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1156)
|++++.|+.+++.
T Consensus 208 G~i~~~~~~~~~~ 220 (222)
T cd03224 208 GRVVLEGTAAELL 220 (222)
T ss_pred CeEEEeCCHHHHh
Confidence 9999999987653
No 211
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-36 Score=339.94 Aligned_cols=214 Identities=25% Similarity=0.366 Sum_probs=180.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++++. +..+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 678899888741 2358999999999999999999999999999999999876 56899999998754
Q ss_pred h---hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 936 Q---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
. ...++.+||++|++. .+...||.||+.+..... ..+.+...+.++++++.++|.+..++.+ ..||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567899999974 334579999998765432 2334445567889999999988777663 579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999765 899999999987 57789999999986 688999
Q ss_pred cCC
Q 001108 1091 GPL 1093 (1156)
Q Consensus 1091 g~~ 1093 (1156)
|+.
T Consensus 220 g~~ 222 (277)
T PRK13652 220 GTV 222 (277)
T ss_pred CCH
Confidence 875
No 212
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-36 Score=339.08 Aligned_cols=215 Identities=22% Similarity=0.342 Sum_probs=174.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCC-CCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1156)
.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++ ..++.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccc
Confidence 4999999999999999999999999999999999999998 9999999998764322 35799999986 367789
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+|||.|+....+... .+....++++++.+||++..+..+
T Consensus 98 tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~----- 138 (279)
T PRK13650 98 TVEDDVAFGLENKGIPH----------------------------------EEMKERVNEALELVGMQDFKEREP----- 138 (279)
T ss_pred cHHHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc-----
Confidence 99999998754322110 011224567899999987666554
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++...+ ++|+.++|+..++ ..||+|++|++|
T Consensus 139 ~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tilivtH~~~~~-~~~dri~~l~~G 216 (279)
T PRK13650 139 ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ-MTVISITHDLDEV-ALSDRVLVMKNG 216 (279)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHH-HhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998865334 4455566777777 589999999999
Q ss_pred eEEEEcChhHHHH---HHHhcCCCCC
Q 001108 402 QIVYQGPRELVLE---FFASMGFRCP 424 (1156)
Q Consensus 402 ~iv~~G~~~~~~~---~f~~~G~~~p 424 (1156)
+++..|+++++.. .++..|+.+|
T Consensus 217 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 217 QVESTSTPRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred EEEEECCHHHHHcChHHHHHcCCCCc
Confidence 9999999987653 2334454433
No 213
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-37 Score=354.09 Aligned_cols=255 Identities=26% Similarity=0.369 Sum_probs=195.1
Q ss_pred HhhHHHHHHhhhccccchHHHHHHHHHHHhh-cCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDR-VGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
+...+..|+++...+.+++. ...-.. .-...|.++++.+||+|.++.
T Consensus 285 ~~g~aa~d~i~~~l~~~~~~-----~~~~~~~~~~~~~~~ei~~~~l~~~y~~--------------------------- 332 (559)
T COG4988 285 AAGEAAADKLFTLLESPVAT-----PGSGEKAEVANEPPIEISLENLSFRYPD--------------------------- 332 (559)
T ss_pred hhhhhHHHHHHHHhcCCCCC-----CCCccccccccCCCceeeecceEEecCC---------------------------
Confidence 34456666666666665541 111101 112336889999999999753
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~ 234 (1156)
. +++++|+|+++++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||++.++.. .+++++||+|+
T Consensus 333 -----g-~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~ 403 (559)
T COG4988 333 -----G-KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQN 403 (559)
T ss_pred -----C-CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCC
Confidence 1 14899999999999999999999999999999999999998 999999999987765 36899999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+ +..|+||||.++..- ...+.+.++.++. .+.+.+.-+.+.||
T Consensus 404 p~l-f~gTireNi~l~~~~----~s~e~i~~al~~a------------------------------~l~~~v~~p~GLdt 448 (559)
T COG4988 404 PYL-FAGTIRENILLARPD----ASDEEIIAALDQA------------------------------GLLEFVPKPDGLDT 448 (559)
T ss_pred Ccc-ccccHHHHhhccCCc----CCHHHHHHHHHHh------------------------------cHHHhhcCCCcccc
Confidence 755 457999999987521 1112222221111 11222333668899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ ++|||||+|||++||||+.+++++++||||++||..++..|.+.|.++++ ++|+++ ++| +.+...-+|+
T Consensus 449 ~ige~G-~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~-itH-rl~~~~~~D~ 523 (559)
T COG4988 449 VIGEGG-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLV-ITH-RLEDAADADR 523 (559)
T ss_pred hhccCC-CCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEE-EEc-ChHHHhcCCE
Confidence 999865 57999999999999999999999999999999999999999999998764 355555 444 4567788999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++++|.++++.+
T Consensus 524 I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 524 IVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred EEEecCCceeccCCHHHHhh
Confidence 99999999999999999854
No 214
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-36 Score=336.26 Aligned_cols=213 Identities=25% Similarity=0.353 Sum_probs=178.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+||||+|++|++++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 67888888774 2469999999999999999999999999999999999865 56899999998653
Q ss_pred h---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001108 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 1012 (1156)
. ..+++.++|++|++.+++.+||+||+.+...... ...+..++.++++++.+++.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 2234579999999988888999999988643211 122333456788999999987777653 5799999
Q ss_pred HHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1013 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1013 rqrl~iA~aL~------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
|||++||+||+ .+|++|+|||||+|||+.++..+++.|+++. ++|+|||++||++. ++.+.||++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999987 67999999999986 47779999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (258)
T PRK13548 218 RLVADGTP 225 (258)
T ss_pred EEEeeCCH
Confidence 88888874
No 215
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-36 Score=333.69 Aligned_cols=213 Identities=30% Similarity=0.409 Sum_probs=171.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred EEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 5999999999999999999999999999999999999988 999999999876543 2357999999988899
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.++..... .. .... .+.. .......++.+++.+||.+..++.+
T Consensus 92 ~~tv~~~l~~~~~~~~--~~---~~~~------~~~~---------------~~~~~~~~~~~l~~~~l~~~~~~~~--- 142 (241)
T cd03256 92 RLSVLENVLSGRLGRR--ST---WRSL------FGLF---------------PKEEKQRALAALERVGLLDKAYQRA--- 142 (241)
T ss_pred cCcHHHHHHhhhcccc--hh---hhhh------cccC---------------cHHHHHHHHHHHHHcCChhhhCCCc---
Confidence 9999999987642110 00 0000 0000 0001224567788999987666544
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++...+ ++||.++|+..++.+++|++++|+
T Consensus 143 --~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~tH~~~~~~~~~d~v~~l~ 219 (241)
T cd03256 143 --DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG-ITVIVSLHQVDLAREYADRIVGLK 219 (241)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998765334 455667888889999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|++++.|+++++.
T Consensus 220 ~G~i~~~~~~~~~~ 233 (241)
T cd03256 220 DGRIVFDGPPAELT 233 (241)
T ss_pred CCEEEeecCHHHhh
Confidence 99999999988753
No 216
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3.7e-36 Score=336.58 Aligned_cols=206 Identities=21% Similarity=0.356 Sum_probs=171.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+++
T Consensus 21 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 97 (269)
T PRK11831 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFT 97 (269)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccCC
Confidence 4899999999999999999999999999999999999998 999999998875432 1356999999988899
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.++..... ... + .+....+..+++.+||.+..++.+
T Consensus 98 ~~tv~enl~~~~~~~~-~~~-----~---------------------------~~~~~~~~~~l~~~gl~~~~~~~~--- 141 (269)
T PRK11831 98 DMNVFDNVAYPLREHT-QLP-----A---------------------------PLLHSTVMMKLEAVGLRGAAKLMP--- 141 (269)
T ss_pred CCCHHHHHHHHHHHcc-CCC-----H---------------------------HHHHHHHHHHHHHcCChhhhhCCh---
Confidence 9999999988643210 000 0 001123466788999988777655
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++... .+++||.++|+..++.++||+|++|+
T Consensus 142 --~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~v~~l~ 218 (269)
T PRK11831 142 --SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA-LGVTCVVVSHDVPEVLSIADHAYIVA 218 (269)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhhCEEEEEE
Confidence 469999999999999999999999999999999999999999999987653 24455567888899999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|++++.|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (269)
T PRK11831 219 DKKIVAHGSAQALQ 232 (269)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988764
No 217
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-36 Score=333.45 Aligned_cols=217 Identities=24% Similarity=0.279 Sum_probs=178.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 367888888763 246899999999999999999999999999999999986421 3689999999
Q ss_pred ccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc----cccccCCCC
Q 001108 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL----RQSLVGLPG 1004 (1156)
Q Consensus 932 ~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~----~~~~~~~~~ 1004 (1156)
.++.. ..+++.+||++|++.+++.+||.||+.+....+.. ....++..+.++++++.++|.+. .+..
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 143 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP----- 143 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----
Confidence 87542 23456799999999888899999999986543211 11223445668899999998642 3333
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
+.+||||||||++|||||+.+|+||+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.||++++|++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~- 220 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK- 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999864 899999999987 47788999999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 221 G~i~~~g~~ 229 (250)
T PRK14247 221 GQIVEWGPT 229 (250)
T ss_pred CeEEEECCH
Confidence 688888874
No 218
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-36 Score=336.10 Aligned_cols=217 Identities=22% Similarity=0.269 Sum_probs=179.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 478899988773 2469999999999999999999999999999999999866 5689999999876
Q ss_pred Chh---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC----------CCC--ChHHHHHHHHHHHHHcCCCccccc
Q 001108 935 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLS----------PEV--DSETRKMFIDEVMELVELNPLRQS 998 (1156)
Q Consensus 935 ~~~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~----------~~~--~~~~~~~~v~~~l~~l~l~~~~~~ 998 (1156)
... . .+..++|++|++.+++.+||+||+.+....... ... ...+..+.+.++++.+++.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 233589999999999999999999986431100 000 111233567888999999877666
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCe
Q 001108 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 1077 (1156)
Q Consensus 999 ~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~ 1077 (1156)
.+ ..||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 53 569999999999999999999999999999999999999999999998765 899999999987 57788999
Q ss_pred EEEEecCcEEEEecCC
Q 001108 1078 LFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1078 v~~l~~Gg~~~~~g~~ 1093 (1156)
+++|++ |++++.|+.
T Consensus 224 i~~l~~-g~i~~~~~~ 238 (255)
T PRK11300 224 IYVVNQ-GTPLANGTP 238 (255)
T ss_pred EEEEEC-CeEEecCCH
Confidence 999986 688888875
No 219
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-36 Score=332.43 Aligned_cols=205 Identities=28% Similarity=0.421 Sum_probs=170.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.+||.++..... ++.++|++|++.+++.+|
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 4999999999999999999999999999999999999998 9999999988754322 357999999998999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc--cccccccccc
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV--CADTMVGDEM 320 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~~~ 320 (1156)
|+||+.++.+..+... .+....+.++++.+||+. ..++ .
T Consensus 92 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~l~~~~~~~~-----~ 132 (242)
T cd03295 92 VEENIALVPKLLKWPK----------------------------------EKIRERADELLALVGLDPAEFADR-----Y 132 (242)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcHHHHhc-----C
Confidence 9999988654322100 001123567788999975 4444 3
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++... +++||.++|+..++.+++|+|++|++
T Consensus 133 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tvii~sH~~~~~~~~~d~i~~l~~ 211 (242)
T cd03295 133 PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL-GKTIVFVTHDIDEAFRLADRIAIMKN 211 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999876532 44555677788889999999999999
Q ss_pred CeEEEEcChhHHH
Q 001108 401 GQIVYQGPRELVL 413 (1156)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1156)
|++++.|+++++.
T Consensus 212 G~i~~~~~~~~~~ 224 (242)
T cd03295 212 GEIVQVGTPDEIL 224 (242)
T ss_pred CEEEEecCHHHHH
Confidence 9999999987763
No 220
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-36 Score=337.02 Aligned_cols=203 Identities=26% Similarity=0.337 Sum_probs=169.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCC-CCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN-HIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++. .++.+
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 4999999999999999999999999999999999999998 9999999998764332 357999999853 45678
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.|+....+... .+....++.+++.+||.+..++.+
T Consensus 96 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~----- 136 (274)
T PRK13647 96 TVWDDVAFGPVNMGLDK----------------------------------DEVERRVEEALKAVRMWDFRDKPP----- 136 (274)
T ss_pred cHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCCh-----
Confidence 99999998753221100 001124567889999987776655
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|++++. . +.+|+.++|+..++.++||+|++|++|
T Consensus 137 ~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-Q-GKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998764 3 445566788888999999999999999
Q ss_pred eEEEEcChhHH
Q 001108 402 QIVYQGPRELV 412 (1156)
Q Consensus 402 ~iv~~G~~~~~ 412 (1156)
++++.|+++++
T Consensus 215 ~i~~~g~~~~~ 225 (274)
T PRK13647 215 RVLAEGDKSLL 225 (274)
T ss_pred EEEEECCHHHh
Confidence 99999998654
No 221
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-36 Score=343.98 Aligned_cols=217 Identities=22% Similarity=0.414 Sum_probs=173.5
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-------------------Ccc
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------------------VPQ 225 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-------------------~~~ 225 (1156)
.++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|+++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 34999999999999999999999999999999999999998 99999999886432 124
Q ss_pred ceEEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHH
Q 001108 226 RTAAYISQHDN-HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (1156)
Q Consensus 226 ~~~~yv~Q~d~-~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1156)
+.++||+|++. .+...||+||+.|+....+.. . .+....++.+++
T Consensus 116 ~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~ 161 (320)
T PRK13631 116 RRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVK-K---------------------------------SEAKKLAKFYLN 161 (320)
T ss_pred hcEEEEEECchhccccchHHHHHHhhHHhcCCC-H---------------------------------HHHHHHHHHHHH
Confidence 67999999862 344569999999875322110 0 001124567788
Q ss_pred HcCCc-ccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 001108 305 VLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (1156)
Q Consensus 305 ~lgL~-~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q 383 (1156)
.+||+ ...+. .+..|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++.. . +++|+.++|
T Consensus 162 ~~gL~~~~~~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~-g~TiiivtH 234 (320)
T PRK13631 162 KMGLDDSYLER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-N-NKTVFVITH 234 (320)
T ss_pred HcCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEec
Confidence 99996 34443 3457999999999999999999999999999999999999999999998754 3 445666788
Q ss_pred ChhhHHhhcCeEEEEcCCeEEEEcChhHHHH---HHHhcCCCCCC
Q 001108 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLE---FFASMGFRCPK 425 (1156)
Q Consensus 384 ~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 425 (1156)
+..++.++||+|++|++|++++.|+++++.. .++..|+.+|.
T Consensus 235 d~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 235 TMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 8888999999999999999999999988742 34455555544
No 222
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-36 Score=326.48 Aligned_cols=197 Identities=27% Similarity=0.415 Sum_probs=166.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+|
T Consensus 14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e 89 (210)
T cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVID 89 (210)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHH
Confidence 4999999999999999999999999999999999999988 9999999987754 23567999999988889999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+.+.....+... .+....++++++.+||++..++.+ +.||
T Consensus 90 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 130 (210)
T cd03269 90 QLVYLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKRV-----EELS 130 (210)
T ss_pred HHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCcH-----hhCC
Confidence 9988654322100 001123567888999987776554 4699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1156)
|||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.+++|++++|++|++++
T Consensus 131 ~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 131 KGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-A-GKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 9999999999999999999999999999999999999999998754 3 3456667888889999999999999999987
Q ss_pred Ec
Q 001108 406 QG 407 (1156)
Q Consensus 406 ~G 407 (1156)
.|
T Consensus 209 ~~ 210 (210)
T cd03269 209 YG 210 (210)
T ss_pred cC
Confidence 65
No 223
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-36 Score=342.72 Aligned_cols=205 Identities=26% Similarity=0.374 Sum_probs=169.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC-----------------------
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----------------------- 221 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~----------------------- 221 (1156)
..+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999999998 8999999876421
Q ss_pred ----cCccceEEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhH
Q 001108 222 ----FVPQRTAAYISQHD-NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296 (1156)
Q Consensus 222 ----~~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 296 (1156)
...++.+|||+|++ ..++..||+|||.|+....+... ++..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK----------------------------------EEAK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH----------------------------------HHHH
Confidence 01245799999985 35566899999998764332110 0112
Q ss_pred HHHHHHHHHcCCc-ccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 001108 297 VITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 375 (1156)
Q Consensus 297 ~~~~~~l~~lgL~-~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~ 375 (1156)
.+++.+++.+||+ +..+.. +..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++.. . +
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g 215 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-Q-G 215 (305)
T ss_pred HHHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-C
Confidence 2467788999996 455544 457999999999999999999999999999999999999999999998763 3 4
Q ss_pred eEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHH
Q 001108 376 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 376 t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
.+|+.++|+..++.++||+|++|++|++++.|+++++.
T Consensus 216 ~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 216 KTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred CEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 55666888999999999999999999999999998874
No 224
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-36 Score=333.98 Aligned_cols=217 Identities=24% Similarity=0.265 Sum_probs=178.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478899998874 246999999999999999999999999999999999986532 3589999999
Q ss_pred ccCC-----hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~-----~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++. ...+++.++|++|++.+++.+||.||+.+....+.. ....+..++.++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8763 123456799999999999999999999886543311 1122334456788999998853 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999986 4778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |++++.|+.
T Consensus 223 ~-G~i~~~~~~ 232 (253)
T PRK14267 223 L-GKLIEVGPT 232 (253)
T ss_pred C-CEEEEeCCH
Confidence 6 688888874
No 225
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.6e-36 Score=332.26 Aligned_cols=219 Identities=23% Similarity=0.254 Sum_probs=176.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 35788887773 24699999999999999999999999999999999997411256899999998754
Q ss_pred hh---cc-cceEEEeccCCCCCCCCCHHHHHHHHHHhhCC--C--CCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001108 936 QE---TF-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--P--EVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1156)
Q Consensus 936 ~~---~~-~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~--~--~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~ 1006 (1156)
.. .. +..++|++|++.+++.+|++|++.+....... . ..+.++..+.+.++++.++|. ...+..++ .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 31 22 23489999999999999999999876432211 0 112233345688999999997 35554421 2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecCc
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 1085 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~-~d~v~~l~~Gg 1085 (1156)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ .+... ||++++|++ |
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G 221 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-G 221 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-C
Confidence 49999999999999999999999999999999999999999999999877999999999986 36666 799999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (243)
T TIGR01978 222 RIVKSGDV 229 (243)
T ss_pred EEEEecCH
Confidence 88888874
No 226
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-36 Score=334.35 Aligned_cols=214 Identities=24% Similarity=0.287 Sum_probs=176.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC---CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||++||+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 588999988763 24689999999999999999999999999999999997652 13589999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ..+++.+||++|++.+++ +|++||+.|....+. .+.+..++.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHG---ANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 234567999999988887 899999998754321 233344456788999998843 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++||+++ ++.+.||++++|+
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 899999999986 4678899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |++++.|+.
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 6 689998874
No 227
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.7e-36 Score=329.21 Aligned_cols=195 Identities=29% Similarity=0.404 Sum_probs=161.6
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-------ccceEEEEcCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDNH 237 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-------~~~~~~yv~Q~d~~ 237 (1156)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 45999999999999999999999999999999999999998 999999999876533 13579999999889
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++.+||+||+.++....+... .+....++.+++.+||++..++.+
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 138 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------------------------------KERRERAEELLERVGLGDRLNHYP- 138 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhcCh-
Confidence 999999999998764332100 001123567888999987666554
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
+.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..+ ++|+.++|+..++. .||++++
T Consensus 139 ----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 139 ----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAG-TTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred ----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CeEEEEECCHHHHh-hhcEEEE
Confidence 46999999999999999999999999999999999999999999998765234 44555677777775 9999999
Q ss_pred EcCCeE
Q 001108 398 LSDGQI 403 (1156)
Q Consensus 398 L~~G~i 403 (1156)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
No 228
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-36 Score=333.81 Aligned_cols=215 Identities=21% Similarity=0.237 Sum_probs=176.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+||||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 588999998874 235899999999999999999999999999999999976531 2479999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC----cccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~~~ 1002 (1156)
.++.. ..+++.+||++|++.+++ +||+||+.|...... .......++.+.++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 234567999999988774 899999998754321 112233456678889998874 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..++++|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999996 4799999999987 4778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 6 688888874
No 229
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.6e-36 Score=331.95 Aligned_cols=215 Identities=25% Similarity=0.315 Sum_probs=178.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||+|++||+++|+|+|||||||||++|+|... +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 57788887763 2469999999999999999999999999999999999865 46899999998754
Q ss_pred hh----cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC--C---CCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 936 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--P---EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 936 ~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~--~---~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
.. ..++.++|++|++.+++.+||+||+.+....... . ....+..++.++++++.+++.+..+.. +.
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AG 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hh
Confidence 21 1234699999999999999999999886432100 0 011233456688999999998776665 35
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
.||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 6999999999999999999999999999999999999999999999865 799999999986 47788999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
++..|+.
T Consensus 220 ~~~~~~~ 226 (242)
T TIGR03411 220 VLAEGSL 226 (242)
T ss_pred EEeeCCH
Confidence 8888864
No 230
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-36 Score=336.95 Aligned_cols=208 Identities=25% Similarity=0.345 Sum_probs=174.4
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD 235 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d 235 (1156)
....+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 3456999999999999999999999999999999999999998 9999999988754321 24799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 001108 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1156)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1156)
.+++.+||+||+.++....+... . .....++++++.+||.+..++.
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~~~~------~----------------------------~~~~~~~~~l~~~~l~~~~~~~ 157 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQGVPR------A----------------------------EREERAAEALELVGLEGWEHKY 157 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCH------H----------------------------HHHHHHHHHHHHcCCHhHhhCC
Confidence 88989999999998754322100 0 0112356788999998777766
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
++ .|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++...+ .+|+.++|+..++.+++|++
T Consensus 158 ~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tiii~tH~~~~~~~~~d~v 231 (269)
T cd03294 158 PD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ-KTIVFITHDLDEALRLGDRI 231 (269)
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCEE
Confidence 54 6999999999999999999999999999999999999999999998765334 45556778888999999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001108 396 ILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1156)
++|++|++++.|+++++.
T Consensus 232 ~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 232 AIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
No 231
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-36 Score=326.64 Aligned_cols=207 Identities=24% Similarity=0.330 Sum_probs=171.2
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
.++|+++.++ ++. .|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~ 64 (211)
T cd03298 2 RLDKIRFSYG-------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTA 64 (211)
T ss_pred EEEeEEEEeC-------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCc
Confidence 5678877763 122 39999999999999999999999999999999876 568999999987643
Q ss_pred h-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001108 937 E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1156)
Q Consensus 937 ~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 1015 (1156)
. ..++.+||++|++.+++.+|++||+.+....+. .. .+..++.++++++.+++.+..+..+ ..||||||||
T Consensus 65 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (211)
T cd03298 65 APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQR 136 (211)
T ss_pred CCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHH
Confidence 1 234679999999999989999999987543211 11 1233456889999999987777653 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1016 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
++||+||+.+|++|+|||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.||++++|++ |+++..
T Consensus 137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 210 (211)
T cd03298 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQ 210 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeec
Confidence 9999999999999999999999999999999999999875 4899999999986 47788999999986 576654
No 232
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-36 Score=328.42 Aligned_cols=201 Identities=25% Similarity=0.346 Sum_probs=165.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1156)
..+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|+++|.++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 45999999999999999999999999999999999999988 9999999998765432 2469999999888
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++.+||+||+.++....+... .+....++.+++.+||++..++.+
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~- 143 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------------------------------AEINSRALEMLAAVGLEHRANHRP- 143 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-
Confidence 999999999998654321100 001124567889999987666544
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
..|||||||||+||++++.+|++|||||||+|||+.++..+.+.|+++.... +++||.++|+..++.. +|++++
T Consensus 144 ----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 144 ----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQ-GTAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHh-hCEEEE
Confidence 4699999999999999999999999999999999999999999999876433 4455557777777665 589999
Q ss_pred EcCCeEEEEcCh
Q 001108 398 LSDGQIVYQGPR 409 (1156)
Q Consensus 398 L~~G~iv~~G~~ 409 (1156)
|.+|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999998864
No 233
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.2e-36 Score=350.55 Aligned_cols=208 Identities=26% Similarity=0.441 Sum_probs=175.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+||.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|+..+++.+|
T Consensus 17 ~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~t 93 (402)
T PRK09536 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFD 93 (402)
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCC
Confidence 4999999999999999999999999999999999999998 9999999998765432 467999999988889999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.++..... + ... . ...+....++++++.+||.+..++.+ +
T Consensus 94 v~e~v~~~~~~~~-~-~~~---------------~-------------~~~~~~~~v~~~le~vgl~~~~~~~~-----~ 138 (402)
T PRK09536 94 VRQVVEMGRTPHR-S-RFD---------------T-------------WTETDRAAVERAMERTGVAQFADRPV-----T 138 (402)
T ss_pred HHHHHHhccchhc-c-ccc---------------C-------------CCHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 9999998642110 0 000 0 00011235678899999988777654 4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||.|||||+.+|++|||||||+|||+.++.++++.|+++++ .+ ++|+.++|+..++.++||++++|++|+
T Consensus 139 ~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g-~TIIivsHdl~~~~~~adrii~l~~G~ 216 (402)
T PRK09536 139 SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DG-KTAVAAIHDLDLAARYCDELVLLADGR 216 (402)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999874 34 456667889999999999999999999
Q ss_pred EEEEcChhHHH
Q 001108 403 IVYQGPRELVL 413 (1156)
Q Consensus 403 iv~~G~~~~~~ 413 (1156)
+++.|++++++
T Consensus 217 iv~~G~~~ev~ 227 (402)
T PRK09536 217 VRAAGPPADVL 227 (402)
T ss_pred EEEecCHHHHh
Confidence 99999998864
No 234
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-36 Score=335.09 Aligned_cols=217 Identities=25% Similarity=0.342 Sum_probs=179.7
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++++ ++.+|+||||++++|++++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 67888888763 3469999999999999999999999999999999999865 46899999998653
Q ss_pred h---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
. ..+++.++|++|+..+++.+|+.||+.++...... .....+...+.++++++.+++.+..++. +..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHH
Confidence 2 23345699999999888889999999875311000 0111123345678899999998777765 3569999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEc
Confidence 999999999999999999999999999999999999999998777999999999987 57889999999986 6888888
Q ss_pred CCC
Q 001108 1092 PLG 1094 (1156)
Q Consensus 1092 ~~~ 1094 (1156)
+..
T Consensus 221 ~~~ 223 (255)
T PRK11231 221 TPE 223 (255)
T ss_pred CHH
Confidence 753
No 235
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-37 Score=351.36 Aligned_cols=257 Identities=22% Similarity=0.316 Sum_probs=197.7
Q ss_pred chHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhh
Q 001108 77 GLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1156)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1156)
..++...+..|+-++.+++++. .. +.-..+.+...++++||+|+++.
T Consensus 302 ~lgq~~~Sa~Rl~~i~~q~~e~-----~~--~~~~~~~~~~~l~~~~vsF~y~~-------------------------- 348 (573)
T COG4987 302 HLGQVIASARRLNDILDQKPEV-----TF--PDEQTATTGQALELRNVSFTYPG-------------------------- 348 (573)
T ss_pred HhhHHHHHHHHHhhhccCCccc-----CC--CccccCCccceeeeccceeecCC--------------------------
Confidence 3556777888888888887772 11 11112222226999999999864
Q ss_pred hcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcC
Q 001108 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1156)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q 233 (1156)
++.++|+|+|+++++||.+||+|+||||||||++.|+|-++|+ +|+|++||.++..... ++.+++++|
T Consensus 349 ------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Q 419 (573)
T COG4987 349 ------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQ 419 (573)
T ss_pred ------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhcc
Confidence 1234999999999999999999999999999999999999999 9999999999876655 468999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 001108 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1156)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1156)
..|++..|+|+||.++.. ....+.+.++.++. + .++. ....++..|
T Consensus 420 -r~hlF~~Tlr~NL~lA~~----~AsDEel~~aL~qv---g------------------------L~~l--~~~~p~gl~ 465 (573)
T COG4987 420 -RVHLFSGTLRDNLRLANP----DASDEELWAALQQV---G------------------------LEKL--LESAPDGLN 465 (573)
T ss_pred -chHHHHHHHHHHHhhcCC----CCCHHHHHHHHHHc---C------------------------HHHH--HHhChhhhh
Confidence 567888999999988642 22222222221111 0 0111 123556789
Q ss_pred ccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 001108 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1156)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1156)
|.+|+.+. .||||||||++|||+|+++.++++|||||.|||+.|+.++++.|.+-+ .++|+++ ++|+... .+.||
T Consensus 466 t~lge~G~-~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~-vTHrL~~-le~~d 540 (573)
T COG4987 466 TWLGEGGR-RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLM-VTHRLRG-LERMD 540 (573)
T ss_pred chhccCCC-cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEE-Eeccccc-HhhcC
Confidence 99998654 699999999999999999999999999999999999999999997643 4566655 5555544 57899
Q ss_pred eEEEEcCCeEEEEcChhHHHH
Q 001108 394 DIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~ 414 (1156)
+|++|++|+++++|.+.+++.
T Consensus 541 rIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 541 RIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEEEEECCeeeecCCHHhhhc
Confidence 999999999999999999875
No 236
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-36 Score=339.17 Aligned_cols=215 Identities=26% Similarity=0.299 Sum_probs=181.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. ..+.+|+||||+|++||++||+||||||||||+++|+|... +..|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 3788999888741 12358999999999999999999999999999999999876 4689999999876
Q ss_pred Ch---hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ...++.+||++|++. .++..||.||+.+..... ..+.++.++.+.++++.++|.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 43 234567999999973 566789999998875433 1233445567899999999988777664 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++|||||+.+|+||||||||+|||+.++..++++|+++.++ |+|||++||+++. + +.||++++|.+ |++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~-~~~d~i~~l~~-G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-A-AQADRVIVMNK-GEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 8999999999863 4 46999999986 68899
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13635 221 EGTP 224 (279)
T ss_pred ECCH
Confidence 9875
No 237
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.8e-36 Score=343.14 Aligned_cols=208 Identities=23% Similarity=0.244 Sum_probs=173.9
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCC--C
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--N 236 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d--~ 236 (1156)
..+|+|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.... .++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 56999999999999999999999999999999999999987 999999999886543 235799999986 5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-cccccc
Q 001108 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1156)
+++.+||.||+.+..+....+.. ..+....++.+++.+||. ...+
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~~~--------------------------------~~~~~~~~~~~l~~vgl~~~~~~-- 156 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPKLS--------------------------------RQEVKDRVKAMMLKVGLLPNLIN-- 156 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccCCC--------------------------------HHHHHHHHHHHHHHcCCChHHhc--
Confidence 78899999999987543210000 001123456788999994 3344
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
+.+..|||||||||+||+||+.+|++||+||||+|||..++.+|++.|+++.+. .+++++.++|+...+.+++|+|
T Consensus 157 ---~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 157 ---RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred ---CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 445679999999999999999999999999999999999999999999987653 3456667899999999999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001108 396 ILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1156)
++|++|++++.|+.+++.
T Consensus 233 ~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999998875
No 238
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=303.69 Aligned_cols=200 Identities=27% Similarity=0.400 Sum_probs=177.9
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHH
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 960 (1156)
..+|+|||++|.+||.++++||||||||||||+++|..+ +..|.|.+||.++...... -|.|+|++.++|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPgae--rgvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAE--RGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCcc--ceeEeccCccchhhHHHH
Confidence 358999999999999999999999999999999999887 6789999999987654333 389999999999999999
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 001108 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040 (1156)
Q Consensus 961 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~ 1040 (1156)
|+.|+..++. +++.++.+.+.+.+..++|.+..++. +-+||||||||+.|||||+.+|+.|+||||.+.||.
T Consensus 94 NvafgL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~-----i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLRG---IEKAQRREIAHQMLALVGLEGAEHKY-----IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHhCcccccccc-----eEeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 9999998874 56788899999999999999988776 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC-cEEEEecCC
Q 001108 1041 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGPL 1093 (1156)
Q Consensus 1041 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~G-g~~~~~g~~ 1093 (1156)
-+++.++++|-++.+ +|+.++++||+.+ +..-.++++++|..| |+++..=++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999864 5999999999976 445567999999865 677777665
No 239
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-36 Score=340.04 Aligned_cols=206 Identities=21% Similarity=0.312 Sum_probs=169.5
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-------CccceEEEEcCCC-C
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHD-N 236 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-------~~~~~~~yv~Q~d-~ 236 (1156)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.+|||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 34999999999999999999999999999999999999998 99999999987542 1246799999985 2
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-cccccc
Q 001108 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1156)
.+...||+||+.|+....+... .+....++++++.+||. ...++.
T Consensus 97 ~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (286)
T PRK13646 97 QLFEDTVEREIIFGPKNFKMNL----------------------------------DEVKNYAHRLLMDLGFSRDVMSQS 142 (286)
T ss_pred ccchhhHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 3334699999998753321100 01112456788899996 455544
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
++.|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++... .+++|+.++|+..++.+++|+|
T Consensus 143 -----~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 143 -----PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred -----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEE
Confidence 4569999999999999999999999999999999999999999999987643 3456666888889999999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001108 396 ILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1156)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 217 IVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998764
No 240
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.4e-36 Score=333.56 Aligned_cols=212 Identities=27% Similarity=0.373 Sum_probs=170.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92 (243)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence 4999999999999999999999999999999999999988 999999998875432 2457999999988899
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.++..... .. ..... +. ...+....++.+++.+||.+..+..+
T Consensus 93 ~~tv~~~l~~~~~~~~--~~---~~~~~------~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~~--- 143 (243)
T TIGR02315 93 RLTVLENVLHGRLGYK--PT---WRSLL------GR---------------FSEEDKERALSALERVGLADKAYQRA--- 143 (243)
T ss_pred cccHHHHHhhcccccc--cc---hhhhh------cc---------------ccHHHHHHHHHHHHHcCcHhhhcCCc---
Confidence 9999999987532110 00 00000 00 00011234567888999987666544
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||+||+.+|++|+|||||+|||+.+...+.+.|+++.+.. +++|+.++|+..++.++||++++|+
T Consensus 144 --~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~ 220 (243)
T TIGR02315 144 --DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKED-GITVIINLHQVDLAKKYADRIVGLK 220 (243)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEEE
Confidence 4699999999999999999999999999999999999999999999876533 4455567888888999999999999
Q ss_pred CCeEEEEcChhHH
Q 001108 400 DGQIVYQGPRELV 412 (1156)
Q Consensus 400 ~G~iv~~G~~~~~ 412 (1156)
+|++++.|+++++
T Consensus 221 ~G~i~~~~~~~~~ 233 (243)
T TIGR02315 221 AGEIVFDGAPSEL 233 (243)
T ss_pred CCEEEecCCHHHh
Confidence 9999999998765
No 241
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=7.3e-36 Score=328.13 Aligned_cols=205 Identities=26% Similarity=0.367 Sum_probs=169.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc--cceEEEEcCCCCCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--QRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~lTV 243 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+||
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 15 RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence 4999999999999999999999999999999999999998 9999999988754322 2579999999888889999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.+.....+... .+....++.+++.+||+...++.++ .
T Consensus 92 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 132 (236)
T TIGR03864 92 RQNLRYHAALHGLSR----------------------------------AEARERIAALLARLGLAERADDKVR-----E 132 (236)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCChh-----h
Confidence 999987653321100 0011235667889999877766554 5
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
||||||||++||++|+.+|+++||||||+|||+.+...+.+.|+++++..+.| |+.++|+..++. .+|+|++|++|++
T Consensus 133 LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t-iii~sH~~~~~~-~~d~i~~l~~G~i 210 (236)
T TIGR03864 133 LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLS-VLWATHLVDEIE-ADDRLVVLHRGRV 210 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCE-EEEEecChhhHh-hCCEEEEEeCCeE
Confidence 99999999999999999999999999999999999999999999876433444 555677777775 5999999999999
Q ss_pred EEEcChhHHHH
Q 001108 404 VYQGPRELVLE 414 (1156)
Q Consensus 404 v~~G~~~~~~~ 414 (1156)
++.|+++++..
T Consensus 211 ~~~~~~~~~~~ 221 (236)
T TIGR03864 211 LADGAAAELRG 221 (236)
T ss_pred EEeCCHHHHHH
Confidence 99999887654
No 242
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-36 Score=333.09 Aligned_cols=217 Identities=19% Similarity=0.247 Sum_probs=179.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+||||+|++||++||+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 377899988874 246999999999999999999999999999999999986532 2589999999
Q ss_pred ccCC-----hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~-----~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++. ....++.+||++|++.+++.+||+||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 8753 12345679999999999999999999988754332 1123344567888999998842 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+.+||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 457999999999999999999999999999999999999999999999864 699999999986 4778999999997
Q ss_pred c-----CcEEEEecCC
Q 001108 1083 R-----GGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~-----Gg~~~~~g~~ 1093 (1156)
+ .|++++.|+.
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 3 5799999874
No 243
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-36 Score=337.79 Aligned_cols=213 Identities=25% Similarity=0.372 Sum_probs=177.5
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 56788888773 2358999999999999999999999999999999999876 56899999998753
Q ss_pred h-----hcccceEEEeccCCCC-CCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 Q-----ETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~-----~~~~~~~gyv~q~~~~-~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
. ...++.+||++|++.. ....|+.||+.+....+ ....++..+.++++++.+++.+..+.. +..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCC
Confidence 1 1234679999999753 34568999998864432 123334455678899999998777665 35799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
||||||++||++|+.+|+||||||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 47788999999986 68888
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 217 ~g~~ 220 (271)
T PRK13638 217 HGAP 220 (271)
T ss_pred eCCH
Confidence 8874
No 244
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-36 Score=350.91 Aligned_cols=202 Identities=24% Similarity=0.295 Sum_probs=174.5
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh---c----ccceEEEeccCCCC
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDIH 952 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~q~~~~ 952 (1156)
...+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++... . .++.+||++|++.+
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 3468999999999999999999999999999999999876 5689999999876421 1 23579999999999
Q ss_pred CCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001108 953 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1032 (1156)
Q Consensus 953 ~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLD 1032 (1156)
++.+||+||+.|....+. ...++.++.+.++++.++|.+..++.+ ..||||||||++|||||+.+|+|||||
T Consensus 118 ~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999999999998765432 233445567889999999988777763 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1033 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1033 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999875 5899999999987 57788999999986 688888864
No 245
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-36 Score=336.24 Aligned_cols=217 Identities=21% Similarity=0.277 Sum_probs=181.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.+.++|++++++ ++.+|+||||+|++|++++|+||||||||||+++|+|... +..|+|.++|.++
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEh
Confidence 578899998874 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ..+++.++|++|++.+++.+|++||+.+....... .....+..++.++++++.++|.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCh
Confidence 32 23345799999999988889999999875311100 0001123345678999999998776665 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |.|||+++|++. ++.+.||++++|++ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999987 48889999999986 68889
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 225 ~g~~ 228 (265)
T PRK10253 225 QGAP 228 (265)
T ss_pred eCCH
Confidence 8875
No 246
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=5.9e-36 Score=327.20 Aligned_cols=213 Identities=25% Similarity=0.350 Sum_probs=175.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++... ....+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~~---------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQGE---------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCCC---------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 478999988874210 01358999999999999999999999999999999999876 4689999999875
Q ss_pred Chh-------cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001108 935 KQE-------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1156)
Q Consensus 935 ~~~-------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~ 1007 (1156)
... ..++.++|++|++.+++.+|+.||+.+....+. ....+.++.+.++++.+++.+..+..+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 421 112469999999988899999999988654331 223344567889999999987766653 46
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |.|||+++|+++. + +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-A-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 8999999999863 4 56999999986 56
Q ss_pred EEE
Q 001108 1087 EIY 1089 (1156)
Q Consensus 1087 ~~~ 1089 (1156)
++.
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 653
No 247
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-36 Score=335.36 Aligned_cols=217 Identities=27% Similarity=0.373 Sum_probs=179.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|... +..|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 588999988773 2469999999999999999999999999999999999865 4689999999765
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ..+++.++|++|++.+++.+|+.||+.+....... ........++.++++++.+++.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 23455799999998888889999999875321100 00111233456789999999987666653 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++||+||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |++++
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999998765 899999999987 47789999999986 68888
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 229 ~~~~ 232 (265)
T PRK10575 229 QGTP 232 (265)
T ss_pred ecCH
Confidence 8874
No 248
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.5e-36 Score=324.31 Aligned_cols=194 Identities=26% Similarity=0.397 Sum_probs=164.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-CccceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-VPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|++.+++.+||+
T Consensus 14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAR 90 (208)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcHH
Confidence 4999999999999999999999999999999999999988 99999999876532 1245799999998889999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.+.....+. ....++.+++.+||++..++.+ ..|
T Consensus 91 e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~L 127 (208)
T cd03268 91 ENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKV-----KGF 127 (208)
T ss_pred HHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhH-----hhC
Confidence 999886532210 0113456788899987766554 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.. .+ .+|+.++|+..++.+++|++++|++|+++
T Consensus 128 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 128 SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QG-ITVLISSHLLSEIQKVADRIGIINKGKLI 205 (208)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998764 34 44555778888999999999999999998
Q ss_pred EEc
Q 001108 405 YQG 407 (1156)
Q Consensus 405 ~~G 407 (1156)
+.|
T Consensus 206 ~~g 208 (208)
T cd03268 206 EEG 208 (208)
T ss_pred ecC
Confidence 765
No 249
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-36 Score=306.84 Aligned_cols=216 Identities=27% Similarity=0.393 Sum_probs=183.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
|+.+|++|++. .+.+|++||++++|||++||+|||||||||||++|+|... +..|++.++|.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChh
Confidence 56788999874 4679999999999999999999999999999999999876 46899999999875
Q ss_pred h---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001108 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 1012 (1156)
. ...++..+.+||+..+....||+|-+.++..-... .....+..+.++++|+..++.++..+. ...|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchH
Confidence 4 34566779999999988789999999998543211 111124445678999999999888765 35699999
Q ss_pred HHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1013 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1013 rqrl~iA~aL~~------~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
||||.+||.|+. ++++||||||||.||...+..++++.|+++++|..|+++-||.+. ...+||++++|.+ |+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-Ce
Confidence 999999999975 346999999999999999999999999999999999999999986 6789999999986 79
Q ss_pred EEEecCCC
Q 001108 1087 EIYVGPLG 1094 (1156)
Q Consensus 1087 ~~~~g~~~ 1094 (1156)
++..|++.
T Consensus 219 v~a~g~p~ 226 (259)
T COG4559 219 VIASGSPQ 226 (259)
T ss_pred EeecCCHH
Confidence 99999864
No 250
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-36 Score=321.85 Aligned_cols=195 Identities=41% Similarity=0.730 Sum_probs=166.7
Q ss_pred eEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHH
Q 001108 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLA 197 (1156)
Q Consensus 118 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~ 197 (1156)
.+.|+||++.++.. +..+.+|+|+|+++++|++++|+|||||||||||++
T Consensus 3 ~~~~~~~~~~~~~~------------------------------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~ 52 (202)
T cd03233 3 TLSWRNISFTTGKG------------------------------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKA 52 (202)
T ss_pred eEEEEccEEEeccC------------------------------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHH
Confidence 47899999998541 133469999999999999999999999999999999
Q ss_pred HhcCCC---CCCCceeEEEEcCccCCCc--CccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHh
Q 001108 198 LAGKLD---PTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272 (1156)
Q Consensus 198 L~G~~~---~~~~~~G~V~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (1156)
|+|.++ |+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++++..
T Consensus 53 l~G~~~~~~~~---~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------------ 111 (202)
T cd03233 53 LANRTEGNVSV---EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------ 111 (202)
T ss_pred hcccCCCCCCc---ceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc------------------
Confidence 999998 66 99999999987643 23467999999999999999999998754210
Q ss_pred cCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCC
Q 001108 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352 (1156)
Q Consensus 273 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEpts 352 (1156)
.+..+..||||||||++||++|+.+|+++||||||+
T Consensus 112 --------------------------------------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~ 147 (202)
T cd03233 112 --------------------------------------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTR 147 (202)
T ss_pred --------------------------------------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCc
Confidence 112234699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEc
Q 001108 353 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1156)
Q Consensus 353 gLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G 407 (1156)
|||+.++..+.+.|+++....+.++|+++||+..++.+.+|++++|++|++++.|
T Consensus 148 ~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 148 GLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999998865335677787888888999999999999999998765
No 251
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.2e-36 Score=384.63 Aligned_cols=258 Identities=26% Similarity=0.398 Sum_probs=198.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++.+..++|+.++++.+++. .........+.....++|+||++.++.
T Consensus 428 ~~~~~~~~~ri~~il~~~~e~-----~~~~~~~~~~~~~~~I~~~~vsf~Y~~--------------------------- 475 (694)
T TIGR03375 428 YQQAKTALQSLDELMQLPVER-----PEGTRFLHRPRLQGEIEFRNVSFAYPG--------------------------- 475 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCC-----CCCCCCCCCCCccceEEEEEEEEEeCC---------------------------
Confidence 678888899998888776541 000000011112347999999999842
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
...++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|+
T Consensus 476 -----~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~ 547 (694)
T TIGR03375 476 -----QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQD 547 (694)
T ss_pred -----CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCC
Confidence 1124899999999999999999999999999999999999998 9999999999877654 5789999997
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+| +.|++|||.++.. ....+.+.++++. .+ .+.. +-.|++..||
T Consensus 548 ~~lf-~~TI~eNi~~~~~----~~~~~~i~~a~~~---~~------------------------l~~~--i~~lp~gl~T 593 (694)
T TIGR03375 548 PRLF-YGTLRDNIALGAP----YADDEEILRAAEL---AG------------------------VTEF--VRRHPDGLDM 593 (694)
T ss_pred hhhh-hhhHHHHHhCCCC----CCCHHHHHHHHHH---cC------------------------hHHH--HHhCcccccc
Confidence 7655 5799999987631 1111222222211 10 1111 2247888999
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+. .||||||||++||||++.+|++++||||||+||+.++..|.+.|+++. .++|+|+ ++|.. ++.+.||+
T Consensus 594 ~i~e~G~-~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~ii-ItHrl-~~~~~~D~ 668 (694)
T TIGR03375 594 QIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVL-VTHRT-SLLDLVDR 668 (694)
T ss_pred eecCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEE-EecCH-HHHHhCCE
Confidence 9998764 699999999999999999999999999999999999999999998764 3456655 44443 56789999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++++|+++++++
T Consensus 669 iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 669 IIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred EEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999875
No 252
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=7.8e-37 Score=344.22 Aligned_cols=256 Identities=27% Similarity=0.395 Sum_probs=202.3
Q ss_pred hHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCC
Q 001108 81 RQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPS 160 (1156)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 160 (1156)
++.+-.|+-+.+.+.++ ...++.+|-|+..+..|++++--
T Consensus 305 Ar~s~~Rl~~lL~~~p~--------~~~~m~LP~P~g~L~Ve~l~~~P-------------------------------- 344 (580)
T COG4618 305 ARQSYKRLNELLAELPA--------AAERMPLPAPQGALSVERLTAAP-------------------------------- 344 (580)
T ss_pred HHHHHHHHHHHHHhCcc--------ccCCCCCCCCCceeeEeeeeecC--------------------------------
Confidence 44444555544444433 33467888899999999999831
Q ss_pred CcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc---ceEEEEcCCCCC
Q 001108 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNH 237 (1156)
Q Consensus 161 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~---~~~~yv~Q~d~~ 237 (1156)
...++++|+|+||.+.+|+-++|+||||||||||.++|.|..+|. +|.|.+||.+++++++. +.+||.||+ +-
T Consensus 345 Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQd-Ve 420 (580)
T COG4618 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQD-VE 420 (580)
T ss_pred CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCccc-ce
Confidence 113357999999999999999999999999999999999999998 99999999999888764 789999995 55
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++..||.|||. |+.. ....+.+.++++.... .++ ++.|++++||.||
T Consensus 421 LF~GTIaeNIa---Rf~~-~~d~~kIieAA~lAgv---------------------------Hel--Il~lP~GYdT~iG 467 (580)
T COG4618 421 LFDGTIAENIA---RFGE-EADPEKVIEAARLAGV---------------------------HEL--ILRLPQGYDTRIG 467 (580)
T ss_pred ecCCcHHHHHH---hccc-cCCHHHHHHHHHHcCh---------------------------HHH--HHhCcCCccCccC
Confidence 55679999995 2221 1122333333333211 111 5789999999999
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
+.+. +||||||||+++||||+++|.+++||||-|.||+.....+.+.|.+... .++|+|+. + |++.+...+|+|++
T Consensus 468 ~~G~-~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvvi-a-HRPs~L~~~Dkilv 543 (580)
T COG4618 468 EGGA-TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVI-A-HRPSALASVDKILV 543 (580)
T ss_pred CCCC-CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEE-e-cCHHHHhhcceeee
Confidence 8765 7999999999999999999999999999999999999999999988643 45555553 3 46789999999999
Q ss_pred EcCCeEEEEcChhHHHHHHH
Q 001108 398 LSDGQIVYQGPRELVLEFFA 417 (1156)
Q Consensus 398 L~~G~iv~~G~~~~~~~~f~ 417 (1156)
|++|++-.+|+++|++....
T Consensus 544 l~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 544 LQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred ecCChHHhcCCHHHHHHHhc
Confidence 99999999999999987543
No 253
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.4e-36 Score=375.00 Aligned_cols=256 Identities=24% Similarity=0.372 Sum_probs=193.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++..+..+|+.++++.+++ ..+.. .........+++|+|+++.++.
T Consensus 304 ~~~~~~s~~ri~~ll~~~~~-----~~~~~-~~~~~~~~~~i~~~~v~f~y~~--------------------------- 350 (574)
T PRK11160 304 LGQVIASARRINEITEQKPE-----VTFPT-TSTAAADQVSLTLNNVSFTYPD--------------------------- 350 (574)
T ss_pred HHHHHHHHHHHHHHHhCCCC-----CCCCc-ccCCCCCCCeEEEEEEEEECCC---------------------------
Confidence 45667778888877766544 11000 0011122457999999999732
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
.+.++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|++||.++++... ++.++||+|+
T Consensus 351 -----~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 422 (574)
T PRK11160 351 -----QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQR 422 (574)
T ss_pred -----CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEccc
Confidence 1124899999999999999999999999999999999999998 9999999999877654 4679999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+| +.|++|||.++.. ....+.+.++.+. .+ .++. .-. +++.||
T Consensus 423 ~~lf-~~ti~~Ni~~~~~----~~~~~~i~~al~~---~~------------------------l~~~--i~~-p~GldT 467 (574)
T PRK11160 423 VHLF-SATLRDNLLLAAP----NASDEALIEVLQQ---VG------------------------LEKL--LED-DKGLNA 467 (574)
T ss_pred chhh-cccHHHHhhcCCC----ccCHHHHHHHHHH---cC------------------------CHHH--HcC-ccccCc
Confidence 7655 5799999988641 1111111211111 00 0111 123 678899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.||+.+. .||||||||++|||+++++|++|+||||||+||+.++..|.+.|++.. .++|+|++. |.. +....||+
T Consensus 468 ~vge~g~-~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiit-Hr~-~~~~~~d~ 542 (574)
T PRK11160 468 WLGEGGR-QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMIT-HRL-TGLEQFDR 542 (574)
T ss_pred hhcCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEe-cCh-hHHHhCCE
Confidence 9998654 699999999999999999999999999999999999999999998863 355666644 443 34567999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|++++.|+++++++
T Consensus 543 i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 543 ICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999865
No 254
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-36 Score=338.05 Aligned_cols=217 Identities=24% Similarity=0.327 Sum_probs=176.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++... ...+.+|+||||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67889988874210 001358999999999999999999999999999999999876 56899999998753
Q ss_pred h-------hcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCC
Q 001108 936 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 1005 (1156)
Q Consensus 936 ~-------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~ 1005 (1156)
. ...++.++|++|++ .+++ .||+||+.|..... ....++.++.++++++.++|.+ ..+.. +
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 143 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----P 143 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 23456799999996 3444 69999998865432 1233444556788999999963 44544 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.+|++++|++ |
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G 221 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-G 221 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999777999999999986 47788999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (280)
T PRK13649 222 KLVLSGKP 229 (280)
T ss_pred EEEEeCCH
Confidence 88888874
No 255
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-36 Score=333.11 Aligned_cols=219 Identities=21% Similarity=0.259 Sum_probs=179.3
Q ss_pred CCCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC--C-CeEEEEE
Q 001108 851 FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNI 927 (1156)
Q Consensus 851 ~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i 927 (1156)
..+..++++|+++.++ +..+|+|+||+|++||++||+||||||||||+++|+|... + .+.+|+|
T Consensus 9 ~~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i 75 (260)
T PRK10744 9 TAPSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI 75 (260)
T ss_pred CCCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE
Confidence 3445689999998874 2368999999999999999999999999999999999753 1 1358999
Q ss_pred EEcCccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----cccc
Q 001108 928 TISGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQS 998 (1156)
Q Consensus 928 ~i~g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~ 998 (1156)
.++|.++.. ..+++.++|++|++.+++ .|++||+.+...... ..+.+..++.++++++.+++.+ ..+.
T Consensus 76 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 152 (260)
T PRK10744 76 LLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQ 152 (260)
T ss_pred EECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhc
Confidence 999987531 234567999999988877 899999988654321 1233344567889999999843 2333
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 001108 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 999 ~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
. +..||||||||++||+||+.+|+||+|||||+|||+.++..+++.|+++. ++.|||++||++. ++.+.+|++
T Consensus 153 ~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i 225 (260)
T PRK10744 153 S-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYT 225 (260)
T ss_pred C-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEE
Confidence 2 35799999999999999999999999999999999999999999999986 4789999999986 477889999
Q ss_pred EEEecCcEEEEecCC
Q 001108 1079 FLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1079 ~~l~~Gg~~~~~g~~ 1093 (1156)
++|++ |+++..|+.
T Consensus 226 ~~l~~-G~i~~~g~~ 239 (260)
T PRK10744 226 AFMYL-GELIEFGNT 239 (260)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 688888874
No 256
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=4e-36 Score=326.26 Aligned_cols=198 Identities=31% Similarity=0.454 Sum_probs=166.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc--CccceEEEEcCCCCCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lTV 243 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 5999999999999999999999999999999999999998 99999999887542 124679999999988898999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.+.....+... .+....++++++.+||++..+..+ +.
T Consensus 96 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (218)
T cd03266 96 RENLEYFAGLYGLKG----------------------------------DELTARLEELADRLGMEELLDRRV-----GG 136 (218)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhhhh-----hh
Confidence 999987653322100 001224567889999987766554 46
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. . +.+||.++|+..++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-L-GKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998753 3 44556677888899999999999999999
Q ss_pred EEEc
Q 001108 404 VYQG 407 (1156)
Q Consensus 404 v~~G 407 (1156)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
No 257
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-36 Score=330.76 Aligned_cols=219 Identities=21% Similarity=0.284 Sum_probs=175.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCC---CCCeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~---~~~~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+||||+|++||++||+||||||||||+++|+|.. .+.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 477889988773 246999999999999999999999999999999999962 2112479999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+...+.++++++.+++.+........ .+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKE-SAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhC-Ccc
Confidence 87642 234567999999988876 6999999886543311 11223445678899999986422111111 145
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++ ++.+.||++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 5899999999987 47788999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
+++.|+.
T Consensus 223 ~~~~~~~ 229 (250)
T PRK14245 223 MVEYDDT 229 (250)
T ss_pred EEEECCH
Confidence 9999874
No 258
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-36 Score=336.17 Aligned_cols=214 Identities=28% Similarity=0.356 Sum_probs=178.7
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
+.++|+++.++ +++.+|+||||+|++||++||+||||||||||+++|+|... +..|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 56888888773 12358999999999999999999999999999999999865 46899999998763
Q ss_pred h-----hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 Q-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~-----~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
. ...++.++|++|++. .+...||.||+.+..... ....++..+.+.++++.++|.++.++.+ ..||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 123567999999963 333579999998764321 1233445567889999999988877763 4699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.+.||++++|++ |++++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 47778999999986 68888
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 218 ~g~~ 221 (275)
T PRK13639 218 EGTP 221 (275)
T ss_pred eCCH
Confidence 8874
No 259
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-36 Score=331.29 Aligned_cols=220 Identities=23% Similarity=0.307 Sum_probs=176.6
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC---CCeEEEEEEEc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITIS 930 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~---~~~~~G~i~i~ 930 (1156)
..++++|++++++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... ..+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 3588999998874 2359999999999999999999999999999999999742 11358999999
Q ss_pred CccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001108 931 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 931 g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~ 1005 (1156)
|.++.. ..+++.++|++|++.+++ .||+||+.+....+.. ...+..++.++++++.+++.+........ .+
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLHE-SA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhC-Cc
Confidence 987632 234567999999988887 5999999887543321 12233456678899999985421111111 14
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++. +|+|||+++|+++ ++.+.||++++|++ |
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~v~~l~~-G 224 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDVTAFFYM-G 224 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCEEEEEEC-C
Confidence 5799999999999999999999999999999999999999999999985 4799999999986 47788999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
+++..|+.
T Consensus 225 ~i~~~g~~ 232 (253)
T PRK14242 225 KLIEVGPT 232 (253)
T ss_pred EEEEeCCH
Confidence 88888764
No 260
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=6.5e-36 Score=331.53 Aligned_cols=204 Identities=25% Similarity=0.387 Sum_probs=170.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-----------CccceEEEEcCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----------VPQRTAAYISQH 234 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-----------~~~~~~~yv~Q~ 234 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 4899999999999999999999999999999999999988 99999999887532 123579999999
Q ss_pred CCCCCCCCHHHHHHHHhhh-cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 001108 235 DNHIGEMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1156)
+.+++.+||+||+.++... .+. .. .+....++.+++.+||+...|
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~-~~---------------------------------~~~~~~~~~~l~~~gl~~~~~ 139 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVKGE-PK---------------------------------EEATARARELLAKVGLAGKET 139 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhcCC-CH---------------------------------HHHHHHHHHHHHHcCCcchhh
Confidence 8889899999999885421 110 00 001123566788999987666
Q ss_pred ccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 001108 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1156)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1156)
+.+ +.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.. .+ .+||.++|+..++.+++|
T Consensus 140 ~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~tH~~~~~~~~~d 212 (250)
T PRK11264 140 SYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EK-RTMVIVTHEMSFARDVAD 212 (250)
T ss_pred CCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCCHHHHHHhcC
Confidence 544 46999999999999999999999999999999999999999999998764 34 455567888889999999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001108 394 DIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~ 413 (1156)
+|++|++|++++.|+++++.
T Consensus 213 ~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 213 RAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
No 261
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=6e-36 Score=334.26 Aligned_cols=223 Identities=23% Similarity=0.294 Sum_probs=179.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++...... ..+++.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 67889988874210000 0113579999999999999999999999999999999999876 56899999998754
Q ss_pred hh------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001108 936 QE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1156)
Q Consensus 936 ~~------~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~ 1006 (1156)
.. ..++.++|++|++ .+.+.+||+||+.+...... .......++.+.++++.+++. ...+.. +.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 21 1345799999996 46678999999987543211 122334456688999999996 555554 35
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
.||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||+++|++. .+.+.+|++++|++ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 79999999999999999999999999999999999999999999998764 899999999986 47778999999985 7
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 228 ~i~~~g~~ 235 (265)
T TIGR02769 228 QIVEECDV 235 (265)
T ss_pred EEEEECCH
Confidence 89999875
No 262
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.1e-35 Score=340.35 Aligned_cols=214 Identities=21% Similarity=0.245 Sum_probs=175.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCC--
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD-- 235 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d-- 235 (1156)
..+|+||||+|++||+++|+|+||||||||+++|+|.++|+...+|+|.++|.++..... ++.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 459999999999999999999999999999999999998742238999999998865432 14799999997
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 001108 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1156)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1156)
.+.+.+||.+++.+.....+.... .+....+.++++.+||++..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~~---------------------------------~~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMSK---------------------------------AEAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCH---------------------------------HHHHHHHHHHHHHcCCCChHHH-
Confidence 688999999999876543210000 0112245677889999764322
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
+ ++.+++|||||||||+||+||+.+|++||+||||+|||..++.+|++.|+++.+. .+++++.++|+...+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCCEE
Confidence 2 3567789999999999999999999999999999999999999999999988653 3566777899999999999999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001108 396 ILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1156)
++|++|+|++.|+.+++..
T Consensus 233 ~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998753
No 263
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8e-36 Score=328.70 Aligned_cols=204 Identities=20% Similarity=0.345 Sum_probs=170.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHIGE 240 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~~~ 240 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPH 91 (240)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCCC
Confidence 4999999999999999999999999999999999999988 99999999987542 124579999999888889
Q ss_pred CCHHHHHHHHhhh-cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 241 MTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 241 lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
+||+||+.|+... .+... .+....++++++.+||+...+..+
T Consensus 92 ~tv~~~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~--- 134 (240)
T PRK09493 92 LTALENVMFGPLRVRGASK----------------------------------EEAEKQARELLAKVGLAERAHHYP--- 134 (240)
T ss_pred CcHHHHHHhHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChHHHhcCh---
Confidence 9999999886421 11000 001123567888999987666544
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
+.|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.. .+ ++||.++|+..++.++||++++|+
T Consensus 135 --~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l~ 210 (240)
T PRK09493 135 --SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EG-MTMVIVTHEIGFAEKVASRLIFID 210 (240)
T ss_pred --hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998753 34 455567788889999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~g~~~~~~ 224 (240)
T PRK09493 211 KGRIAEDGDPQVLI 224 (240)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999988764
No 264
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.7e-36 Score=373.78 Aligned_cols=253 Identities=19% Similarity=0.226 Sum_probs=194.4
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++.....+|+.++++.+++. . +....+....+++|+|+++.++.
T Consensus 308 ~~~~~~s~~ri~~~l~~~~~~------~--~~~~~~~~~~~i~~~~v~f~y~~--------------------------- 352 (592)
T PRK10790 308 LQQAVVAGERVFELMDGPRQQ------Y--GNDDRPLQSGRIDIDNVSFAYRD--------------------------- 352 (592)
T ss_pred HHHHHHHHHHHHHHhcCCCcc------C--CCCccCCCCCeEEEEEEEEEeCC---------------------------
Confidence 457778888888877654431 0 00011112346999999998731
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
+ .++|+|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++..+ ++.++||+|+
T Consensus 353 ---~---~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~ 423 (592)
T PRK10790 353 ---D---NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQD 423 (592)
T ss_pred ---C---CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccC
Confidence 1 23999999999999999999999999999999999999998 9999999999877654 5789999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+|+ .|++|||.++.. ...+.+.++++. .+ .++.++ .|+++.||
T Consensus 424 ~~lF~-~Ti~~NI~~~~~-----~~d~~i~~a~~~---~g------------------------l~~~i~--~lp~Gldt 468 (592)
T PRK10790 424 PVVLA-DTFLANVTLGRD-----ISEEQVWQALET---VQ------------------------LAELAR--SLPDGLYT 468 (592)
T ss_pred Ccccc-chHHHHHHhCCC-----CCHHHHHHHHHH---cC------------------------cHHHHH--hccccccc
Confidence 87665 599999998631 111222222211 11 111222 26778899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+. .||||||||++|||||+++|+|++||||||+||+.++..|.+.|+++. .++|+|+..|++ +....||+
T Consensus 469 ~i~e~g~-~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tvIivtHr~--~~l~~~D~ 543 (592)
T PRK10790 469 PLGEQGN-NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTLVVIAHRL--STIVEADT 543 (592)
T ss_pred cccCCCC-CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCE
Confidence 9998654 699999999999999999999999999999999999999999998764 346666644433 66778999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++..|+++++++
T Consensus 544 ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 544 ILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred EEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999864
No 265
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-36 Score=335.41 Aligned_cols=205 Identities=28% Similarity=0.384 Sum_probs=169.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCC-CCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1156)
++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++ ..++.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~ 97 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA 97 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc
Confidence 4899999999999999999999999999999999999998 9999999998765332 45799999986 367778
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+|||.|+....+... .+....++++++.+||.+..++.++
T Consensus 98 tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~---- 139 (279)
T PRK13635 98 TVQDDVAFGLENIGVPR----------------------------------EEMVERVDQALRQVGMEDFLNREPH---- 139 (279)
T ss_pred cHHHHHhhhHhhCCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCcc----
Confidence 99999998754322100 0112246778899999877776554
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
.|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++.. ..+++|+.++|+..++. .+|+|++|++|
T Consensus 140 -~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~~~~tilivsH~~~~~~-~~d~i~~l~~G 216 (279)
T PRK13635 140 -RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE-QKGITVLSITHDLDEAA-QADRVIVMNKG 216 (279)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHH-cCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999998765 32445555667777775 59999999999
Q ss_pred eEEEEcChhHHHH
Q 001108 402 QIVYQGPRELVLE 414 (1156)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1156)
++++.|+.+++..
T Consensus 217 ~i~~~g~~~~~~~ 229 (279)
T PRK13635 217 EILEEGTPEEIFK 229 (279)
T ss_pred EEEEECCHHHHhc
Confidence 9999999987753
No 266
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=5.2e-36 Score=333.32 Aligned_cols=216 Identities=28% Similarity=0.405 Sum_probs=178.5
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... +..|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 46788887763 3469999999999999999999999999999999999865 46899999998754
Q ss_pred h---hcccceEEEeccCCCCCCCCCHHHHHHHHHH-hhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~-lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
. ...++.++|++|++.+++.+||+||+.+... .+........+..+.+.++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 2 2334568999999877788999999987531 110000111233456788999999987777653 469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|.|||+++|+++ ++.+.||++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999877899999999997 47789999999986 6888888
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
+.
T Consensus 220 ~~ 221 (256)
T TIGR03873 220 PP 221 (256)
T ss_pred CH
Confidence 75
No 267
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=5.6e-36 Score=326.81 Aligned_cols=203 Identities=34% Similarity=0.544 Sum_probs=164.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD---PTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~---~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1156)
+++|+|+|+++++|++++|+||||||||||+++|+|.++ |+ +|+|.++|.++.....++.++|++|++.+++.+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL 96 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCC
Confidence 459999999999999999999999999999999999998 77 999999998875434457899999999899999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHH-HHHHcCCcccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDY-YLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~dt~vg~~~ 320 (1156)
||+||+.|+.......... ... .....+. .++.+++.+..++.
T Consensus 97 tv~enl~~~~~~~~~~~~~---~~~----------------------------~~~~~~~~~l~~~~l~~~~~~~----- 140 (226)
T cd03234 97 TVRETLTYTAILRLPRKSS---DAI----------------------------RKKRVEDVLLRDLALTRIGGNL----- 140 (226)
T ss_pred cHHHHHHHHHHhhcccccc---hHH----------------------------HHHHHHHHHHHhhcchhhhccc-----
Confidence 9999999875432211000 000 0011233 67788887655544
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++..++.++||++++|++
T Consensus 141 ~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~ 219 (226)
T cd03234 141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSS 219 (226)
T ss_pred ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeC
Confidence 456999999999999999999999999999999999999999999998754 3556666544444689999999999999
Q ss_pred CeEEEEc
Q 001108 401 GQIVYQG 407 (1156)
Q Consensus 401 G~iv~~G 407 (1156)
|+++++|
T Consensus 220 G~i~~~g 226 (226)
T cd03234 220 GEIVYSG 226 (226)
T ss_pred CEEEecC
Confidence 9999876
No 268
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=4.8e-36 Score=346.38 Aligned_cols=203 Identities=22% Similarity=0.309 Sum_probs=175.4
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc----cCCh---hc----ccceEEEec
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY----PKKQ---ET----FARISGYCE 947 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~----~~~~---~~----~~~~~gyv~ 947 (1156)
+...+|+|+||+|++||+++|+|+||||||||+++|+|... +..|+|.++|. ++.. .. .++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 45679999999999999999999999999999999999876 56899999995 2211 11 125799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001108 948 QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1027 (1156)
Q Consensus 948 q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~ 1027 (1156)
|++.+++.+||+||+.|+...+ ..+..+.++.+.++++.++|.+..+..+ ..||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886543 2334556677899999999988877764 4699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1028 illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~ 249 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTP 249 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999764 999999999987 57889999999986 689999885
No 269
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.3e-36 Score=385.27 Aligned_cols=261 Identities=22% Similarity=0.275 Sum_probs=196.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCC-CCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGI-DLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1156)
.++....++|+.++++.+++.-............. +.....++|+||++.+..
T Consensus 436 ~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~-------------------------- 489 (710)
T TIGR03796 436 LQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSP-------------------------- 489 (710)
T ss_pred HHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCC--------------------------
Confidence 56788888999888877655100000000000000 112357999999999842
Q ss_pred hcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcC
Q 001108 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1156)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q 233 (1156)
..+++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|
T Consensus 490 ------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q 560 (710)
T TIGR03796 490 ------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQ 560 (710)
T ss_pred ------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEec
Confidence 1134899999999999999999999999999999999999998 9999999999876653 578999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 001108 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1156)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1156)
++.+| +.|++|||.++. +....+.+.++++.. + .++. +..|+.+.|
T Consensus 561 ~~~lf-~gTi~eNi~l~~----~~~~~~~i~~al~~~---~------------------------l~~~--i~~lp~gl~ 606 (710)
T TIGR03796 561 DIFLF-EGTVRDNLTLWD----PTIPDADLVRACKDA---A------------------------IHDV--ITSRPGGYD 606 (710)
T ss_pred CChhh-hccHHHHhhCCC----CCCCHHHHHHHHHHh---C------------------------CHHH--HHhCcCccc
Confidence 87655 679999998752 111122222222111 1 0111 224777889
Q ss_pred ccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 001108 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1156)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1156)
|.+|+.+ .+||||||||++|||||+++|++|+||||||+||+.++..|.+.|++ .++|+|+ ++|.. ++...||
T Consensus 607 t~i~e~G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~Ii-itHrl-~~i~~~D 679 (710)
T TIGR03796 607 AELAEGG-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCII-VAHRL-STIRDCD 679 (710)
T ss_pred ceeccCC-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEE-EecCH-HHHHhCC
Confidence 9999876 47999999999999999999999999999999999999999999975 3456555 45543 5667799
Q ss_pred eEEEEcCCeEEEEcChhHHHH
Q 001108 394 DIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~ 414 (1156)
+|++|++|++++.|+++++++
T Consensus 680 ~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 680 EIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEEEEeCCEEEEecCHHHHHH
Confidence 999999999999999999875
No 270
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-36 Score=317.84 Aligned_cols=190 Identities=59% Similarity=0.947 Sum_probs=162.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++.+. .++.+|+|+||+|++|++++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~~---------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCCC---------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 478899998875210 12469999999999999999999999999999999999743224689999999876
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
. ..+++.++|++|++.+++.+|++||+.+...++ .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 5 344567999999998889999999998753110 39999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
|++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++.++.+.||++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999887799999999998644678899999998757888865
No 271
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-36 Score=348.17 Aligned_cols=206 Identities=24% Similarity=0.333 Sum_probs=175.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1156)
..+|+|+||+|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|+..+
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 45899999999999999999999999999999999999998 9999999998765432 2479999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++.+||+||+.|+....+.... +....++++++.+||.+..++.+
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~~----------------------------------~~~~~~~e~L~~~gL~~~~~~~~- 162 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINAE----------------------------------ERREKALDALRQVGLENYAHSYP- 162 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCCChhhhcCc-
Confidence 9999999999998654321100 01124567899999987666544
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
+.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.... +++||.++|+..++.+++|+|++
T Consensus 163 ----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~-g~TIIivTHd~~~~~~~~Dri~v 237 (400)
T PRK10070 163 ----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH-QRTIVFISHDLDEAMRIGDRIAI 237 (400)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHC-CCeEEEEECCHHHHHHhCCEEEE
Confidence 4699999999999999999999999999999999999999999999876533 44555678889999999999999
Q ss_pred EcCCeEEEEcChhHHH
Q 001108 398 LSDGQIVYQGPRELVL 413 (1156)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1156)
|++|++++.|+++++.
T Consensus 238 L~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 238 MQNGEVVQVGTPDEIL 253 (400)
T ss_pred EECCEEEecCCHHHHH
Confidence 9999999999998764
No 272
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5e-36 Score=328.23 Aligned_cols=210 Identities=26% Similarity=0.320 Sum_probs=173.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||++++||++||+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 35778887764 2469999999999999999999999999999999999876 56899999998754
Q ss_pred hh----cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCH
Q 001108 936 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 936 ~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ..++.++|++|++.+++.+|+.||+.+....+. .. ..+.++++++.++ +.+..+.. +..|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 134 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSG 134 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCH
Confidence 21 124569999999999999999999988654321 11 1233567777776 45555554 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |+++.
T Consensus 135 G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~ 212 (230)
T TIGR03410 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVA 212 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 46778999999986 68888
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 213 ~~~~ 216 (230)
T TIGR03410 213 SGAG 216 (230)
T ss_pred ECCH
Confidence 8875
No 273
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.4e-36 Score=384.77 Aligned_cols=257 Identities=24% Similarity=0.307 Sum_probs=196.4
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++.+..++|+.++++.++|. .+.......+....+|+|+||++.++.
T Consensus 438 ~~~~~~~~~ri~~~l~~~~e~-----~~~~~~~~~~~~~~~I~~~~vsf~y~~--------------------------- 485 (708)
T TIGR01193 438 LQAARVANNRLNEVYLVDSEF-----INKKKRTELNNLNGDIVINDVSYSYGY--------------------------- 485 (708)
T ss_pred HHHHHHHHHHHHHHHcCCCcc-----cccccccCCCCCCCcEEEEEEEEEcCC---------------------------
Confidence 567788889998888766551 100000111223457999999999731
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
..++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||.++++... ++.++||+|+
T Consensus 486 ------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 556 (708)
T TIGR01193 486 ------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQE 556 (708)
T ss_pred ------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecC
Confidence 124899999999999999999999999999999999999998 9999999999876654 5789999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+| +.||+|||.++.+. ....+.+.++++.. + .++. +..|+.+.||
T Consensus 557 ~~lf-~gTI~eNi~l~~~~---~~~~~~i~~a~~~a---~------------------------l~~~--i~~lp~gldt 603 (708)
T TIGR01193 557 PYIF-SGSILENLLLGAKE---NVSQDEIWAACEIA---E------------------------IKDD--IENMPLGYQT 603 (708)
T ss_pred ceeh-hHHHHHHHhccCCC---CCCHHHHHHHHHHh---C------------------------CHHH--HHhcccccCc
Confidence 7655 56999999986321 11112222222211 1 1111 2247788899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.||+.+ .+||||||||++||||++++|++|+||||||+||+.++..+++.|+++ .++|+|+ ++|.. ++.+.||+
T Consensus 604 ~i~e~G-~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~Ii-itHr~-~~~~~~D~ 677 (708)
T TIGR01193 604 ELSEEG-SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIF-VAHRL-SVAKQSDK 677 (708)
T ss_pred EecCCC-CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEE-Eecch-HHHHcCCE
Confidence 999865 479999999999999999999999999999999999999999999863 3456555 55543 56788999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|++++.|+++++++
T Consensus 678 i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 678 IIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999865
No 274
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=6.7e-36 Score=333.57 Aligned_cols=220 Identities=26% Similarity=0.343 Sum_probs=180.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC-eEEEEEEEcCcc
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 933 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 933 (1156)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 478889988763 246999999999999999999999999999999999986532 236999999976
Q ss_pred CCh--------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC-----CCCChHHHHHHHHHHHHHcCCCccccccc
Q 001108 934 KKQ--------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-----PEVDSETRKMFIDEVMELVELNPLRQSLV 1000 (1156)
Q Consensus 934 ~~~--------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 1000 (1156)
+.. ...++.++|++|++.+++.+||+||+.+......+ .....++.+..++++++.+++.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 12345689999999999999999999875321000 00112334567889999999987777653
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEE
Q 001108 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELF 1079 (1156)
Q Consensus 1001 ~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~ 1079 (1156)
..||+|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ +|+|||++||+++ .+.+.||+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 46999999999999999999999999999999999999999999999975 4899999999986 4778899999
Q ss_pred EEecCcEEEEecCCC
Q 001108 1080 LMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1080 ~l~~Gg~~~~~g~~~ 1094 (1156)
+|.+ |++++.|+..
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9986 6888988753
No 275
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.2e-36 Score=323.79 Aligned_cols=191 Identities=27% Similarity=0.370 Sum_probs=160.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCC-CCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDN-HIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~-~~~~lTV~ 244 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .++.+||+
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 4999999999999999999999999999999999999998 9999999988754333467999999863 35578999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.++....+ . ....++++++.+||.+..++.+ ..|
T Consensus 91 e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~L 127 (205)
T cd03226 91 EELLLGLKELD--A------------------------------------GNEQAETVLKDLDLYALKERHP-----LSL 127 (205)
T ss_pred HHHhhhhhhcC--c------------------------------------cHHHHHHHHHHcCCchhcCCCc-----hhC
Confidence 99987642210 0 0013466788999987776655 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+||++|+.+|+++||||||+|||+.++..+.+.|++++. .+ .+|+.++|+..++.+++|++++|++|+++
T Consensus 128 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 128 SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QG-KAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999999999999999999998754 34 45555778888899999999999999975
No 276
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=331.39 Aligned_cols=225 Identities=23% Similarity=0.261 Sum_probs=181.6
Q ss_pred cCCCCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC---CeEEE
Q 001108 849 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITG 925 (1156)
Q Consensus 849 ~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G 925 (1156)
+|..+..++++|++++++ .+.+|+||||+|++||++||+|+||||||||+++|+|...+ .+.+|
T Consensus 14 ~~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G 80 (267)
T PRK14237 14 FPEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTG 80 (267)
T ss_pred cCCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcce
Confidence 444555799999998874 24699999999999999999999999999999999997642 14689
Q ss_pred EEEEcCccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccccccc
Q 001108 926 NITISGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000 (1156)
Q Consensus 926 ~i~i~g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 1000 (1156)
+|.++|.+... ...++.++|++|++.+++ .||+||+.+..... .....+..++.+.++++.++|.+..+...
T Consensus 81 ~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~ 157 (267)
T PRK14237 81 QILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL 157 (267)
T ss_pred EEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh
Confidence 99999987632 123567999999988877 69999998864322 11123344566888999999854221112
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 001108 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080 (1156)
Q Consensus 1001 ~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~ 1080 (1156)
..+ +..||||||||++|||||+.+|++|+|||||+|||+.++..+.++|+++. ++.|||++||+++ ++.+.||++++
T Consensus 158 ~~~-~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~ 234 (267)
T PRK14237 158 HKS-ALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAF 234 (267)
T ss_pred cCC-cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEE
Confidence 221 46799999999999999999999999999999999999999999999985 4799999999987 57789999999
Q ss_pred EecCcEEEEecCC
Q 001108 1081 MKRGGQEIYVGPL 1093 (1156)
Q Consensus 1081 l~~Gg~~~~~g~~ 1093 (1156)
|++ |++++.|+.
T Consensus 235 l~~-G~i~~~g~~ 246 (267)
T PRK14237 235 FYL-GDLIEYDKT 246 (267)
T ss_pred EEC-CEEEEeCCH
Confidence 985 689998875
No 277
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=339.88 Aligned_cols=225 Identities=24% Similarity=0.247 Sum_probs=183.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++...... ...+...+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 478999998875321100 00123579999999999999999999999999999999999876 4589999999876
Q ss_pred Ch------hcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCC
Q 001108 935 KQ------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 1005 (1156)
Q Consensus 935 ~~------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~ 1005 (1156)
.. ..+++.+|||+|++ .+.|.+|+.+++.+..... ......+.++.+.++++.++|.+ ..+.. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 42 12456799999998 5788899999998764432 12344556677899999999964 44554 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
..||||||||++|||||+.+|+|||+||||+|||+.++..|+++|+++.++ |.|||++|||++ .+.+.+|++++|.+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 999999999986 36678999999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 231 G~ive~g~~ 239 (327)
T PRK11308 231 GRCVEKGTK 239 (327)
T ss_pred CEEEEECCH
Confidence 799999974
No 278
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=375.02 Aligned_cols=257 Identities=22% Similarity=0.367 Sum_probs=193.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.+..+...+|+.++.+.+++. ..+....+.+..+|+|+||++.++.
T Consensus 308 ~~~~~~~~~ri~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~vsf~y~~--------------------------- 353 (582)
T PRK11176 308 FQRGMAACQTLFAILDLEQEK-------DEGKRVIERAKGDIEFRNVTFTYPG--------------------------- 353 (582)
T ss_pred HHHHHHHHHHHHHHhcCCCcC-------CCCCcCCCCCCCeEEEEEEEEecCC---------------------------
Confidence 345566777777766544330 0011111222346999999998742
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
...++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|+
T Consensus 354 -----~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~ 425 (582)
T PRK11176 354 -----KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQN 425 (582)
T ss_pred -----CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccC
Confidence 1134999999999999999999999999999999999999998 9999999999877653 4789999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+| +.|++|||.++..- ....+.+.++++.. + .+..+ -.|+++.||
T Consensus 426 ~~lf-~~Ti~~Ni~~~~~~---~~~~~~i~~al~~~---~------------------------l~~~i--~~lp~Gldt 472 (582)
T PRK11176 426 VHLF-NDTIANNIAYARTE---QYSREQIEEAARMA---Y------------------------AMDFI--NKMDNGLDT 472 (582)
T ss_pred ceee-cchHHHHHhcCCCC---CCCHHHHHHHHHHh---C------------------------cHHHH--HhcccccCc
Confidence 7666 57999999876310 01112222221110 0 11112 237788999
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ +.||||||||++|||||+++|++++||||||+||+.++..+++.|+++. .++|+|+ ++|.. +..+.||+
T Consensus 473 ~ig~~g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~-VtHr~-~~~~~~D~ 547 (582)
T PRK11176 473 VIGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLV-IAHRL-STIEKADE 547 (582)
T ss_pred eeCCCC-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEE-Eecch-HHHHhCCE
Confidence 999875 4699999999999999999999999999999999999999999998753 3455555 44443 67788999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|++++.|+++++.+
T Consensus 548 Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 548 ILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999998864
No 279
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-36 Score=323.45 Aligned_cols=196 Identities=31% Similarity=0.465 Sum_probs=165.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1156)
.+|+|+|+++++| +++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 4999999999999 99999999999999999999999998 999999998875432 24679999999988999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.+.....+... .+....++.+++.+||++..++.++ .
T Consensus 90 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (211)
T cd03264 90 REFLDYIAWLKGIPS----------------------------------KEVKARVDEVLELVNLGDRAKKKIG-----S 130 (211)
T ss_pred HHHHHHHHHHhCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHhCchh-----h
Confidence 999988654322100 0011235677889999877776554 6
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|++++. + ++|+.++|+..++.+++|++++|++|++
T Consensus 131 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 131 LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGKL 207 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998753 3 5566678888899999999999999999
Q ss_pred EEEc
Q 001108 404 VYQG 407 (1156)
Q Consensus 404 v~~G 407 (1156)
++.|
T Consensus 208 ~~~g 211 (211)
T cd03264 208 VFEG 211 (211)
T ss_pred EecC
Confidence 8765
No 280
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-36 Score=335.61 Aligned_cols=206 Identities=25% Similarity=0.347 Sum_probs=170.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC--c---CccceEEEEcCCCC-CCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--F---VPQRTAAYISQHDN-HIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~--~---~~~~~~~yv~Q~d~-~~~ 239 (1156)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+.
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 96 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhc
Confidence 4999999999999999999999999999999999999998 9999999998741 1 12467999999863 345
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
..||+||+.++....+... .+....++++++.+||.+..++.+
T Consensus 97 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~--- 139 (283)
T PRK13636 97 SASVYQDVSFGAVNLKLPE----------------------------------DEVRKRVDNALKRTGIEHLKDKPT--- 139 (283)
T ss_pred cccHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhCCc---
Confidence 6899999988653321100 001124577889999987666554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+ ++|+.++|+..++.++||+|++|+
T Consensus 140 --~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tillvsH~~~~~~~~~dri~~l~ 216 (283)
T PRK13636 140 --HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG-LTIIIATHDIDIVPLYCDNVFVMK 216 (283)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998865334 455557888889999999999999
Q ss_pred CCeEEEEcChhHHHH
Q 001108 400 DGQIVYQGPRELVLE 414 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1156)
+|++++.|+++++..
T Consensus 217 ~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 217 EGRVILQGNPKEVFA 231 (283)
T ss_pred CCEEEEeCCHHHHhc
Confidence 999999999988753
No 281
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.7e-36 Score=326.20 Aligned_cols=213 Identities=27% Similarity=0.397 Sum_probs=179.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
+.++|+++.++ .+.+|+|+|++|++|++++|+|+||||||||+++|+|... +..|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~ 65 (232)
T cd03300 1 IELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDIT 65 (232)
T ss_pred CEEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcC
Confidence 35778887763 2469999999999999999999999999999999999876 46899999998764
Q ss_pred hh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.. ..++.+||++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..+..+ ..||+||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (232)
T cd03300 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQ 137 (232)
T ss_pred cCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHH
Confidence 31 124579999999998888999999987654331 223344556788999999988777653 579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|++. ++.+.||++++|++ |++++.|+.
T Consensus 138 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999998764 899999999986 47788999999986 688888763
No 282
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-36 Score=324.04 Aligned_cols=222 Identities=26% Similarity=0.357 Sum_probs=191.8
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDN 236 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~ 236 (1156)
...-++|+|+.++.||+..|||-||||||||+++|.++.+|+ +|+|+++|.++..... ++.++.|+|...
T Consensus 40 ~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 40 LVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred cEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 345689999999999999999999999999999999999998 9999999999866543 367999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccc
Q 001108 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1156)
++|+.||.||..|+...+|.... +.+.++.+.|+..||....+.+.
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYADKYP 162 (386)
T ss_pred cccchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcCc
Confidence 99999999999999999886432 12345677899999999887654
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
++||||+||||.|||||+.+|+|||||||+|+|||--+.++.+.|.++-...+ .+|+.++|+..|++++.|||.
T Consensus 163 -----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~-KTIvFitHDLdEAlriG~rIa 236 (386)
T COG4175 163 -----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK-KTIVFITHDLDEALRIGDRIA 236 (386)
T ss_pred -----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhC-CeEEEEecCHHHHHhccceEE
Confidence 57999999999999999999999999999999999999999988877765444 455668999999999999999
Q ss_pred EEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhh
Q 001108 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v 436 (1156)
+|.+|+||..|+++|++. .|...-+++|..++
T Consensus 237 imkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 237 IMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred EecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 999999999999999864 45555556666544
No 283
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-35 Score=339.06 Aligned_cols=220 Identities=18% Similarity=0.236 Sum_probs=180.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC-C-eEEEEEEEcCcc
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YITGNITISGYP 933 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~-~-~~~G~i~i~g~~ 933 (1156)
++++|++..++.+. +...+|+||||+|++||++||+|+||||||||+++|+|...+ + +.+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDES---------APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCCC---------ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 68899988875321 125699999999999999999999999999999999997642 2 368999999987
Q ss_pred CChh---c----ccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc---cccccC
Q 001108 934 KKQE---T----FARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL---RQSLVG 1001 (1156)
Q Consensus 934 ~~~~---~----~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~---~~~~~~ 1001 (1156)
+... . +++.++|++|++ .+.|.+|+.+++........ ....++.++.+.++++.++|.+. .+..
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-- 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY-- 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC--
Confidence 6421 1 123699999998 47888999998876543321 12345556778999999999753 2333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEE
Q 001108 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFL 1080 (1156)
Q Consensus 1002 ~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~ 1080 (1156)
+.+|||||||||+||+||+.+|+|||+||||+|||+.++..++++|+++.+ .|.|||++|||++ .+.+.+|++++
T Consensus 151 ---p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~v 226 (326)
T PRK11022 151 ---PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIV 226 (326)
T ss_pred ---chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 357999999999999999999999999999999999999999999999976 4999999999987 46788999999
Q ss_pred EecCcEEEEecCC
Q 001108 1081 MKRGGQEIYVGPL 1093 (1156)
Q Consensus 1081 l~~Gg~~~~~g~~ 1093 (1156)
|.+ |+++..|+.
T Consensus 227 m~~-G~ive~g~~ 238 (326)
T PRK11022 227 MYA-GQVVETGKA 238 (326)
T ss_pred EEC-CEEEEECCH
Confidence 985 799999974
No 284
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-36 Score=318.89 Aligned_cols=196 Identities=30% Similarity=0.581 Sum_probs=162.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC-eEEEEEEEcCcc
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 933 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 933 (1156)
.++|+|++|.|+.+. +++.+|+|+||+|++||++||+||||||||||+++|+|...+. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~---------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKGR---------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccCC---------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 578999999997531 3457999999999999999999999999999999999986522 568999999987
Q ss_pred CCh--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 934 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 934 ~~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
... ...++.++|++|++.+++.+||+||+.+..... .+.. +..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234567999999999999999999998753211 1222 3469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
||||++||+||+.+|++|||||||+|||+.+++.+++.|+++.++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999998765 677777766543357889999999986 677765
Q ss_pred c
Q 001108 1091 G 1091 (1156)
Q Consensus 1091 g 1091 (1156)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
No 285
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=331.58 Aligned_cols=216 Identities=23% Similarity=0.266 Sum_probs=177.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC---CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++|++++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 588999998874 24699999999999999999999999999999999997642 13689999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc----cccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL----RQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~----~~~~~~~ 1002 (1156)
.++.. ..+++.+||++|++.+++. ||.||+.|....+.. ........+.++++++.+++.+. .+..
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 160 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP--- 160 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87632 2345679999999888774 999999987543321 11223345567889999999642 2222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ .+.+.||++++|+
T Consensus 161 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~ 236 (267)
T PRK14235 161 --GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH 236 (267)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 789999999987 4778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 237 ~-G~i~~~g~~ 246 (267)
T PRK14235 237 L-GNLVEVGDT 246 (267)
T ss_pred C-CEEEEeCCH
Confidence 6 688888864
No 286
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=6.6e-36 Score=321.67 Aligned_cols=189 Identities=23% Similarity=0.370 Sum_probs=161.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC---h----hcccceEEEeccCCCCC
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK---Q----ETFARISGYCEQNDIHS 953 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~gyv~q~~~~~ 953 (1156)
+.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 469999999999999999999999999999999999876 56899999998742 1 12356799999999988
Q ss_pred CCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001108 954 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1033 (1156)
Q Consensus 954 ~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDE 1033 (1156)
+.+|++||+.+....+ ........+.++++++.+++.+..++.+ ..||+|||||++||+||+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 8899999999865432 1223344567889999999987777653 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1034 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1034 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
||+|||+.++..+++.|+++.++|.|||+++|++. +.+.||++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999998777999999999985 34689999875
No 287
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=7.6e-36 Score=344.72 Aligned_cols=209 Identities=25% Similarity=0.300 Sum_probs=176.0
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCc----cCCCcCc-------cceEEEE
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH----DMDEFVP-------QRTAAYI 231 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~----~~~~~~~-------~~~~~yv 231 (1156)
....+|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|+++|. ++..... ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 4567999999999999999999999999999999999999998 999999996 3332211 2479999
Q ss_pred cCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccc
Q 001108 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1156)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1156)
+|+..+++.+||+||+.|+....+... .+....++++++.+||++.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchh
Confidence 999999999999999999865433210 0112345678999999887
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 001108 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1156)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1156)
.|..++ .|||||||||+|||+|+.+|+||||||||+|||+.++.++.+.|+++.... +.+|+.++|+..++.++
T Consensus 158 ~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~-~~TII~iTHdl~e~~~l 231 (382)
T TIGR03415 158 ADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKL-NKTIIFVSHDLDEALKI 231 (382)
T ss_pred hcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh
Confidence 776554 699999999999999999999999999999999999999999999876533 45556688899999999
Q ss_pred cCeEEEEcCCeEEEEcChhHHHH
Q 001108 392 FDDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
+|+|++|++|+++..|+++++..
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999988753
No 288
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-36 Score=333.76 Aligned_cols=215 Identities=24% Similarity=0.309 Sum_probs=179.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 4789999887741 12468999999999999999999999999999999999876 4689999999876
Q ss_pred Ch---hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ..+++.+||++|++. .++.+||+||+.+..... ....++.+..++++++.++|.+..++.+ ..|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 234567999999974 566789999998864322 1233444567889999999988777663 57999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ ++|||+++|+++. + ..||++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998766 5999999999863 4 57999999986 68888
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 8874
No 289
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=8.5e-36 Score=322.38 Aligned_cols=209 Identities=23% Similarity=0.308 Sum_probs=173.6
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++ .+++|+||++++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~---------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 64 (213)
T TIGR01277 2 ALDKVRYEYE---------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTG 64 (213)
T ss_pred eEEeeeEEeC---------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEccc
Confidence 5677777663 13679999999999999999999999999999999876 468999999987643
Q ss_pred -hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001108 937 -ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1156)
Q Consensus 937 -~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 1015 (1156)
...++.++|++|++.+++.+|++||+.+...... .. ....++.++++++.+++.+..++.+ ..||||||||
T Consensus 65 ~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (213)
T TIGR01277 65 LAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--KL-NAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQR 136 (213)
T ss_pred CChhccceEEEeccCccCCCCcHHHHHHhHhhccC--Cc-cHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHH
Confidence 2345679999999999988999999987543211 11 1223456788999999987777653 5799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1016 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|++. ++.+.+|++++|++ |+++..|.
T Consensus 137 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 99999999999999999999999999999999999998764 899999999986 46778999999985 68887764
No 290
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-36 Score=329.87 Aligned_cols=194 Identities=21% Similarity=0.303 Sum_probs=164.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHH
Confidence 4999999999999999999999999999999999999998 9999999987543 2467999999988888899999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+.++... . . ...++.+++.+||.+..+..+ ..||
T Consensus 101 nl~~~~~~-----~------~-----------------------------~~~~~~~l~~~gl~~~~~~~~-----~~LS 135 (257)
T PRK11247 101 NVGLGLKG-----Q------W-----------------------------RDAALQALAAVGLADRANEWP-----AALS 135 (257)
T ss_pred HHHhcccc-----h------H-----------------------------HHHHHHHHHHcCChhHhcCCh-----hhCC
Confidence 99875310 0 0 012456788899987666544 4699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1156)
|||||||+||++|+.+|+++||||||+|||+.+...+.+.|+++....+ .+|+.++|+..++.+++|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~-~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHG-FTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999998765334 455557888888999999999999999999
Q ss_pred EcChh
Q 001108 406 QGPRE 410 (1156)
Q Consensus 406 ~G~~~ 410 (1156)
.|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88754
No 291
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.6e-35 Score=339.14 Aligned_cols=224 Identities=20% Similarity=0.296 Sum_probs=181.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC-eEEEEEEEcCcc
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 933 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 933 (1156)
.++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 47899998877532 12356999999999999999999999999999999999986531 238999999987
Q ss_pred CCh---hc---c-cceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCC
Q 001108 934 KKQ---ET---F-ARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 1004 (1156)
Q Consensus 934 ~~~---~~---~-~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~ 1004 (1156)
+.. .. + .+.++||+|++ .+.|.+|+.+++.+...... ....++..+++.++++.++|.+..+.....
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~-- 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMKMY-- 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhcCC--
Confidence 642 11 2 24799999998 67889999999987654432 234445566788999999997533221111
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+.+||||||||++||+||+.+|+|||+||||+|||+.++..|+++|+++.++ |.|||++|||++ .+.+.+|++++|.+
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 4679999999999999999999999999999999999999999999999765 999999999987 46678999999985
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 238 -G~ive~g~~ 246 (330)
T PRK09473 238 -GRTMEYGNA 246 (330)
T ss_pred -CEEEEECCH
Confidence 799999984
No 292
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-35 Score=328.65 Aligned_cols=200 Identities=26% Similarity=0.380 Sum_probs=167.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ...++|++|++.+++.+||+|
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~e 89 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQD 89 (255)
T ss_pred eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHHH
Confidence 4999999999999999999999999999999999999998 99999999987542 346899999988888999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+.++....+... .+....++.+++.+||.+..++.+ ..||
T Consensus 90 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS 130 (255)
T PRK11248 90 NVAFGLQLAGVEK----------------------------------MQRLEIAHQMLKKVGLEGAEKRYI-----WQLS 130 (255)
T ss_pred HHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCCh-----hhCC
Confidence 9988653221100 001123567888999987666544 4699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc--CCeE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQI 403 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~--~G~i 403 (1156)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++... +++||.++|+..++.++||+|++|+ +|++
T Consensus 131 gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l~~~~G~i 209 (255)
T PRK11248 131 GGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET-GKQVLLITHDIEEAVFMATELVLLSPGPGRV 209 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCCcEE
Confidence 999999999999999999999999999999999999999999875433 4455567888899999999999998 5999
Q ss_pred EEEcChh
Q 001108 404 VYQGPRE 410 (1156)
Q Consensus 404 v~~G~~~ 410 (1156)
+..++.+
T Consensus 210 ~~~~~~~ 216 (255)
T PRK11248 210 VERLPLN 216 (255)
T ss_pred EEEecCC
Confidence 9988654
No 293
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-35 Score=326.84 Aligned_cols=220 Identities=21% Similarity=0.278 Sum_probs=177.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC--CC-eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||++||+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478899988874 2469999999999999999999999999999999999753 21 2479999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
.++.. ..+++.++|++|++.+++.+|++||+.+...... .....+.++.++++++.+++.......... .+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKS-NAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC-CcC
Confidence 87532 2345679999999999999999999987643321 112233445678899999986421111111 145
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|.+ |+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999975 689999999986 47789999999985 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
++..|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14256 225 LVECGET 231 (252)
T ss_pred EEEeCCH
Confidence 8888874
No 294
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=5.4e-36 Score=327.52 Aligned_cols=198 Identities=23% Similarity=0.376 Sum_probs=166.5
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHH
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~ 963 (1156)
|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..... ..+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999876 568999999987643211 2489999999999999999998
Q ss_pred HHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 001108 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043 (1156)
Q Consensus 964 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~ 1043 (1156)
+...... .....++.++.+.++++.+++.+..++.+ ..||||||||++||++|+.+|++|||||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 8632111 12233444566889999999987766653 56999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1044 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1044 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999986 47788999999986 688877753
No 295
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=327.92 Aligned_cols=219 Identities=21% Similarity=0.264 Sum_probs=176.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC-CeEEEEEEEcCccC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPK 934 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~-~~~~G~i~i~g~~~ 934 (1156)
+.++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|...+ .+..|+|.++|.++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56788888774 24699999999999999999999999999999999997532 24689999999876
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
.. ..+++.++|++|++.+++ .|++||+.+....+.... .....++.++++++.+++.+........ .+..||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQ-NALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhcC-CcccCCHH
Confidence 43 234567999999988887 699999988754432111 1223445678899999995422111111 14579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ |+|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999986 47788999999986 6899888
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
+.
T Consensus 224 ~~ 225 (246)
T PRK14269 224 ES 225 (246)
T ss_pred CH
Confidence 74
No 296
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.1e-35 Score=325.67 Aligned_cols=201 Identities=26% Similarity=0.352 Sum_probs=165.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL 90 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCC
Confidence 5999999999999999999999999999999999999998 9999999988754332 35699999999899999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcC-Ccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LDVCADTMVGDEM 320 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~~ 320 (1156)
||+||+.++....+.. . ....+.+++.++ +....++.
T Consensus 91 tv~~~l~~~~~~~~~~-~------------------------------------~~~~~~~l~~~~~l~~~~~~~----- 128 (230)
T TIGR03410 91 TVEENLLTGLAALPRR-S------------------------------------RKIPDEIYELFPVLKEMLGRR----- 128 (230)
T ss_pred cHHHHHHHHHHhcCcc-h------------------------------------HHHHHHHHHHHHhHHHHhhCC-----
Confidence 9999998875432100 0 011234455555 44444443
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
++.|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++++. .+++|+.++|+..++.+++|+|++|.+
T Consensus 129 ~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~ 207 (230)
T TIGR03410 129 GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELADRYYVMER 207 (230)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4569999999999999999999999999999999999999999999987642 344555577888899999999999999
Q ss_pred CeEEEEcChhHH
Q 001108 401 GQIVYQGPRELV 412 (1156)
Q Consensus 401 G~iv~~G~~~~~ 412 (1156)
|++++.|+.+++
T Consensus 208 g~i~~~~~~~~~ 219 (230)
T TIGR03410 208 GRVVASGAGDEL 219 (230)
T ss_pred CEEEEECCHHHc
Confidence 999999998875
No 297
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.4e-35 Score=324.30 Aligned_cols=201 Identities=27% Similarity=0.347 Sum_probs=162.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCC--CC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--NH 237 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d--~~ 237 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 5999999999999999999999999999999999999998 999999999876533 245799999987 46
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-ccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMV 316 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (1156)
++.+||+||+.+.....+.....+ ......+.+++.++|. ...+..+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSKKE--------------------------------ARKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcHHH--------------------------------HHHHHHHHHHHHCCCChhHhhCCc
Confidence 678999999988654321100000 0001124567888885 4445443
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++...+ ++||.++|+..++.+++|+|+
T Consensus 144 -----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 144 -----HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELG-LTLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred -----hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEE
Confidence 46999999999999999999999999999999999999999999998765324 455557788888889999999
Q ss_pred EEcCCeEEEEc
Q 001108 397 LLSDGQIVYQG 407 (1156)
Q Consensus 397 lL~~G~iv~~G 407 (1156)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
No 298
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=332.64 Aligned_cols=215 Identities=24% Similarity=0.288 Sum_probs=179.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. ..+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 5889999988741 11358999999999999999999999999999999999876 4689999999876
Q ss_pred Ch---hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ...++.++|++|++. +++..|+.+|+.|..... ....+...+.++++++.+++.+..+.. +..||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 43 234567999999974 667789999998864332 123344456688999999998777665 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++. +. .+|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 8999999999873 55 4999999986 68999
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 223 ~g~~ 226 (269)
T PRK13648 223 EGTP 226 (269)
T ss_pred ecCH
Confidence 8875
No 299
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-36 Score=336.77 Aligned_cols=219 Identities=21% Similarity=0.301 Sum_probs=177.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++.... ....+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKTP--------FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCCc--------cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 5889999988742100 01258999999999999999999999999999999999876 4689999999765
Q ss_pred C--------hhcccceEEEeccCCCC-CCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCC
Q 001108 935 K--------QETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPG 1004 (1156)
Q Consensus 935 ~--------~~~~~~~~gyv~q~~~~-~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~ 1004 (1156)
. ...+++.++|++|++.. ....|++||+.|..... ....+...+.+.++++.++|. +..+..
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 2 12345679999999742 22469999998864322 123334445678899999994 555554
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+..||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.||++++|++
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999875 4899999999987 57789999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 688888874
No 300
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.4e-35 Score=325.89 Aligned_cols=213 Identities=26% Similarity=0.388 Sum_probs=179.7
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||++.+||++||+||||||||||+++|+|... +..|+|.++|.++.
T Consensus 1 i~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~ 65 (237)
T TIGR00968 1 IEIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDAT 65 (237)
T ss_pred CEEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcC
Confidence 35678877764 2469999999999999999999999999999999999865 46899999998764
Q ss_pred hh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.. ..||+||+|
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (237)
T TIGR00968 66 RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQ 137 (237)
T ss_pred cCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHH
Confidence 32 234579999999998888999999987654331 222334456788999999987777653 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|++||++|+.+|++++|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 138 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 138 RVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 999999999999999999999999999999999999998765 899999999986 47788999999985 688888874
No 301
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-36 Score=335.29 Aligned_cols=219 Identities=22% Similarity=0.295 Sum_probs=180.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++.... ...+.+|+||||+|++||+++|+|+||||||||+++|+|... +..|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~-------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNEE-------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCCC-------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 3788999988852100 012469999999999999999999999999999999999876 5689999999876
Q ss_pred Ch----hcccceEEEeccCCCC-CCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 935 KQ----ETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 935 ~~----~~~~~~~gyv~q~~~~-~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
.. ...++.+||++|++.. +...||.|++.|..... .....+.++.++++++.++|.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 2345679999999742 33469999999875432 2233455667899999999988877764 5799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
||||||++||++|+.+|++|||||||+|||+.++..+++.|+++.++ |+|||+++|+++. +. .||++++|++ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 9999999999873 54 5999999986 6888
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
+.|+.
T Consensus 224 ~~g~~ 228 (280)
T PRK13633 224 MEGTP 228 (280)
T ss_pred EecCH
Confidence 88874
No 302
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.9e-36 Score=402.16 Aligned_cols=263 Identities=21% Similarity=0.287 Sum_probs=199.2
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCC-----CCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHH
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGID-----LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDIL 152 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 152 (1156)
.+.+++..+|+.++++..++ +..+ +.-+.+ ....+|+|+||+|.|..
T Consensus 1126 ~~~a~~a~~ri~~ll~~~~~-----~~~~-~~~~~~~~~~~~~~g~I~f~nVsF~Y~~---------------------- 1177 (1466)
T PTZ00265 1126 SENAKLSFEKYYPLIIRKSN-----IDVR-DNGGIRIKNKNDIKGKIEIMDVNFRYIS---------------------- 1177 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCCc-----CCCC-CCcccccccCCCCCceEEEEEEEEECCC----------------------
Confidence 56778888888888876442 1000 001111 12357999999999842
Q ss_pred hhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC---------------------------
Q 001108 153 NYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--------------------------- 205 (1156)
Q Consensus 153 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--------------------------- 205 (1156)
+ ...+||+|+|++|+||+.+||+||||||||||+++|+|+++|+
T Consensus 1178 --------~-~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 (1466)
T PTZ00265 1178 --------R-PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQ 1248 (1466)
T ss_pred --------C-CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccc
Confidence 1 1235999999999999999999999999999999999999982
Q ss_pred ------------------------CCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc
Q 001108 206 ------------------------LKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 258 (1156)
Q Consensus 206 ------------------------~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 258 (1156)
...+|+|++||+++.+... ++.+|||+|++.+| +.||+|||.|+.. ..
T Consensus 1249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~----~a 1323 (1466)
T PTZ00265 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKE----DA 1323 (1466)
T ss_pred ccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCC----CC
Confidence 0138999999999877654 57899999987655 6899999999742 12
Q ss_pred hhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHH
Q 001108 259 RYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338 (1156)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al 338 (1156)
..+.+.++++.... ++. +..|++++||.||+.+. .||||||||++|||||
T Consensus 1324 t~eeI~~A~k~A~l---------------------------~~f--I~~LP~GydT~VGe~G~-~LSGGQkQRIaIARAL 1373 (1466)
T PTZ00265 1324 TREDVKRACKFAAI---------------------------DEF--IESLPNKYDTNVGPYGK-SLSGGQKQRIAIARAL 1373 (1466)
T ss_pred CHHHHHHHHHHcCC---------------------------HHH--HHhCccccCCccCCCCC-cCCHHHHHHHHHHHHH
Confidence 22333333332211 111 23689999999998765 5999999999999999
Q ss_pred hcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC----CeEE-EEcChhHHH
Q 001108 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD----GQIV-YQGPRELVL 413 (1156)
Q Consensus 339 ~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~----G~iv-~~G~~~~~~ 413 (1156)
+++|+||+||||||+||+.++..|.+.|+++....++|+|+ +.|. .++.+.||+|++|++ |+++ ++|++++++
T Consensus 1374 lr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIi-IaHR-lsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1374 LREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIIT-IAHR-IASIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEE-Eech-HHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 99999999999999999999999999998864223456555 4444 467788999999999 9955 899999986
Q ss_pred H
Q 001108 414 E 414 (1156)
Q Consensus 414 ~ 414 (1156)
+
T Consensus 1452 ~ 1452 (1466)
T PTZ00265 1452 S 1452 (1466)
T ss_pred h
Confidence 4
No 303
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-36 Score=328.67 Aligned_cols=209 Identities=25% Similarity=0.344 Sum_probs=174.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|... +..|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 367889988773 2468999999999999999999999999999999999865 4689999999875
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSg 1010 (1156)
.. ...++.++|++|++.+++ .|++||+.+....+ . .....+.++++.+++. +..++. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 234567999999988776 69999998754322 1 1124577899999996 455554 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 999999999987 47788999999986 68888
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 8764
No 304
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.7e-36 Score=380.57 Aligned_cols=256 Identities=22% Similarity=0.342 Sum_probs=190.9
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++.....+|+.+.++.+++. .+. .....+.....|+|+||++.++.
T Consensus 444 ~~~~~~a~~ri~~~l~~~~~~-----~~~-~~~~~~~~~~~I~~~nVsf~Y~~--------------------------- 490 (711)
T TIGR00958 444 MMQAVGASEKVFEYLDRKPNI-----PLT-GTLAPLNLEGLIEFQDVSFSYPN--------------------------- 490 (711)
T ss_pred HHHHHHHHHHHHHHhCCCCCC-----CCC-CCCCCCCCCCeEEEEEEEEECCC---------------------------
Confidence 556777888888877665431 000 00000112346999999999842
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
+ +++++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|+
T Consensus 491 ---~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 563 (711)
T TIGR00958 491 ---R-PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQE 563 (711)
T ss_pred ---C-CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecC
Confidence 0 1235999999999999999999999999999999999999998 9999999999876653 5789999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+| +.||||||.++..- ...+.+.++++. .++ ++.+ -.|+++.||
T Consensus 564 ~~lF-~gTIreNI~~g~~~----~~~e~i~~al~~---a~l------------------------~~~i--~~lp~GldT 609 (711)
T TIGR00958 564 PVLF-SGSVRENIAYGLTD----TPDEEIMAAAKA---ANA------------------------HDFI--MEFPNGYDT 609 (711)
T ss_pred cccc-ccCHHHHHhcCCCC----CCHHHHHHHHHH---cCC------------------------HHHH--HhCCCccCC
Confidence 7655 57999999986421 111222222111 110 1112 236778899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ ..||||||||++||||++++|+|++||||||+||+.++..|.+ ... ..++|+|+ ++|.. ++.+.+|+
T Consensus 610 ~ige~G-~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~---~~~~TvIi-ItHrl-~~i~~aD~ 682 (711)
T TIGR00958 610 EVGEKG-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS---RASRTVLL-IAHRL-STVERADQ 682 (711)
T ss_pred cccCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc---cCCCeEEE-EeccH-HHHHhCCE
Confidence 999865 4699999999999999999999999999999999999999888 221 23455555 55554 46678999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++++|+++++++
T Consensus 683 IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 683 ILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EEEEECCEEEEeeCHHHHHh
Confidence 99999999999999999865
No 305
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-36 Score=363.36 Aligned_cols=220 Identities=21% Similarity=0.307 Sum_probs=184.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++ ++.+|+||||+|++||++||+||||||||||+++|+|...+++.+|+|.++|.++
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 378899988873 2469999999999999999999999999999999999876433689999999876
Q ss_pred Chh----cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
... ..++.+||++|++.+++.+||+||+.|....+.....+.+...+.++++++.+++.+..+..+ .+|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 431 124569999999988899999999988754321111123344566889999999987777664 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
|||||++||+||+.+|+||||||||+|||+.++..+++.|+++.++|.|||++||+++ ++.+.||++++|++ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999878999999999986 47788999999986 688998
Q ss_pred cCCC
Q 001108 1091 GPLG 1094 (1156)
Q Consensus 1091 g~~~ 1094 (1156)
|+..
T Consensus 225 ~~~~ 228 (506)
T PRK13549 225 RPAA 228 (506)
T ss_pred cccc
Confidence 8864
No 306
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.6e-34 Score=364.80 Aligned_cols=209 Identities=28% Similarity=0.379 Sum_probs=177.8
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++|+||+|+|+. .++.+|+|+|++|+|||++||+|+||||||||+++|+|... +.+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEE
Confidence 46999999999852 12468999999999999999999999999999999999876 568999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 1003 (1156)
+++ ..+++.+|||+|++.+++ -|++||+.++. + .+ ++.++++++.+++.+.. |+.+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~-----~-~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA-----P-LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC-----C-CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 653 457788999999999876 59999998752 1 22 34577888888887643 4445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|++||+++ ..+.+|++++|++
T Consensus 586 -G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~ 659 (686)
T TIGR03797 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA 659 (686)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC
Confidence 3679999999999999999999999999999999999999999999876 589999999985 4678999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 660 -G~iv~~G~~ 668 (686)
T TIGR03797 660 -GRVVQQGTY 668 (686)
T ss_pred -CEEEEECCH
Confidence 799999984
No 307
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-36 Score=335.21 Aligned_cols=217 Identities=24% Similarity=0.283 Sum_probs=179.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCe-EEEEEEEcCcc
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYP 933 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~-~~G~i~i~g~~ 933 (1156)
.++++|+++.++. ..+.+|+||||+|++||++||+||||||||||+++|+|...+.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4788999888741 12358999999999999999999999999999999999865211 13899999987
Q ss_pred CCh---hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 934 KKQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
... ...++.+||++|++. .++..||+||+.|....+ ..+.++.++.+.++++.++|.+..+.. +..||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCC
Confidence 643 234567999999974 566789999998764322 233445566788999999998877766 35799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++. + +.||++++|++ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 8999999999863 4 67999999986 6899
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
+.|+.
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 98875
No 308
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=331.20 Aligned_cols=215 Identities=22% Similarity=0.256 Sum_probs=175.9
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC---CeEEEEEEEc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 930 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~ 930 (1156)
..+.++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|.... .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3588999998874 24699999999999999999999999999999999997542 1368999999
Q ss_pred CccCC-----hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccC
Q 001108 931 GYPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVG 1001 (1156)
Q Consensus 931 g~~~~-----~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~ 1001 (1156)
|.++. ....++.++|++|++.+++ .||+||+.+.+..+. .. ...++.+.++++.+++.. ..+..
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 98753 1234557999999998887 499999998764432 11 123455677888887742 23332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1002 ~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
+..||||||||++|||||+.+|++|||||||+|||+.++..++++|+++++ ++|||++||+++ ++.+.||++++|
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 457999999999999999999999999999999999999999999999854 799999999987 578899999999
Q ss_pred ec----------CcEEEEecCC
Q 001108 1082 KR----------GGQEIYVGPL 1093 (1156)
Q Consensus 1082 ~~----------Gg~~~~~g~~ 1093 (1156)
++ +|++++.|+.
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred eccccccccccccceEEEeCCH
Confidence 86 3678888875
No 309
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=331.84 Aligned_cols=218 Identities=26% Similarity=0.356 Sum_probs=177.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC------eEEEEEEE
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YITGNITI 929 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~------~~~G~i~i 929 (1156)
++++|++++++ ++.+|+||||+|++|+++||+||||||||||+++|+|...+. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 56788887763 346999999999999999999999999999999999986521 12799999
Q ss_pred cCccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001108 930 SGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 930 ~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~ 1005 (1156)
+|.+... ..+++.++|++|++..++.+|++||+.+....... .....++.++.++++++.+++.+..++. +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9987532 23455689999998766679999999875321110 0111123345688999999998776654 3
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhc
Q 001108 1006 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 1075 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~ 1075 (1156)
..||||||||++||++|+ .+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.|
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 579999999999999999 599999999999999999999999999998765 899999999986 477789
Q ss_pred CeEEEEecCcEEEEecCC
Q 001108 1076 DELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1076 d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|++++|++ |++++.|+.
T Consensus 223 d~i~~l~~-G~i~~~g~~ 239 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAP 239 (272)
T ss_pred CEEEEEEC-CeEEEecCH
Confidence 99999986 689988875
No 310
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-35 Score=337.16 Aligned_cols=208 Identities=20% Similarity=0.233 Sum_probs=174.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCC--C
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--N 236 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d--~ 236 (1156)
..+|+|||++|++|++++|+|+||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 46999999999999999999999999999999999999987 999999999876543 245799999987 5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-ccccc
Q 001108 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTM 315 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (1156)
+.+.+||.+++.+..+......+ .+....+.++++.+||+. .+++
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~gL~~~~~~~- 150 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSLSA---------------------------------AERREKALAMMAKVGLRPEHYDR- 150 (327)
T ss_pred cCCccCHHHHHHHHHHHccCCCH---------------------------------HHHHHHHHHHHHHCCCChHHhcC-
Confidence 88999999999876543210000 011234677899999963 4454
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
.++.|||||||||+||+||+.+|++||+||||+|||..++.+|++.|+++... .+++|+.++|+...+.+++|+|
T Consensus 151 ----~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 151 ----YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE-LGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred ----CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 44579999999999999999999999999999999999999999999987653 3556677899999999999999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001108 396 ILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1156)
++|++|++++.|+.+++.+
T Consensus 226 ~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 9999999999999988753
No 311
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=326.75 Aligned_cols=205 Identities=19% Similarity=0.335 Sum_probs=169.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 17 ~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRL 93 (241)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccC
Confidence 4999999999999999999999999999999999999998 9999999988754332 35799999998889999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.+..+....... .+....++.+++.+||++..+.. .
T Consensus 94 tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~ 135 (241)
T PRK10895 94 SVYDNLMAVLQIRDDLSA---------------------------------EQREDRANELMEEFHIEHLRDSM-----G 135 (241)
T ss_pred cHHHHHhhhhhcccccCH---------------------------------HHHHHHHHHHHHHcCCHHHhhcc-----h
Confidence 999999876432110000 00112456778899998655544 4
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+.+.. .+. +|+.++|+..++.+++|++++|++|
T Consensus 136 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~-tiii~sH~~~~~~~~~d~v~~l~~G 213 (241)
T PRK10895 136 QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGL-GVLITDHNVRETLAVCERAYIVSQG 213 (241)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCC-EEEEEEcCHHHHHHhcCEEEEEeCC
Confidence 56999999999999999999999999999999999999999999988753 344 4555777888999999999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
++++.|+++++.
T Consensus 214 ~i~~~~~~~~~~ 225 (241)
T PRK10895 214 HLIAHGTPTEIL 225 (241)
T ss_pred eEEeeCCHHHHh
Confidence 999999988764
No 312
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.7e-35 Score=328.55 Aligned_cols=205 Identities=22% Similarity=0.322 Sum_probs=170.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC----------------ccceEE
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----------------PQRTAA 229 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~----------------~~~~~~ 229 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 4999999999999999999999999999999999999998 999999998875321 246799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhh-cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCC
Q 001108 230 YISQHDNHIGEMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1156)
Q Consensus 230 yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (1156)
|++|++.+++.+||+||+.++... .+.. . .+....++.+++.+|+
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gl 136 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLVLGMA-R---------------------------------AEAEKRAMELLDMVGL 136 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHHHcCC
Confidence 999998889999999999885321 1100 0 0011235667889999
Q ss_pred cccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 001108 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1156)
Q Consensus 309 ~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~ 388 (1156)
++..+.. +..||||||||++||++|+.+|+++||||||+|||+.+...+.+.|+++... .+++|+.++|+..++
T Consensus 137 ~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~ 210 (252)
T TIGR03005 137 ADKADHM-----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVTHEMGFA 210 (252)
T ss_pred hhHhhcC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHH
Confidence 8766644 3569999999999999999999999999999999999999999999987653 345566678888899
Q ss_pred HhhcCeEEEEcCCeEEEEcChhHHH
Q 001108 389 YDLFDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 389 ~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
.+++|++++|++|++++.|+.+++.
T Consensus 211 ~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 211 REFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999988763
No 313
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-35 Score=326.11 Aligned_cols=202 Identities=25% Similarity=0.387 Sum_probs=165.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (237)
T PRK11614 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM 95 (237)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCC
Confidence 4999999999999999999999999999999999999998 9999999998765432 35699999998889989
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHc-CCcccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGDEM 320 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~~ 320 (1156)
||+||+.++..... . + +. ...++.+++.+ ++.+..++.
T Consensus 96 tv~~~l~~~~~~~~---~-~---~~-----------------------------~~~~~~~l~~~~~l~~~~~~~----- 134 (237)
T PRK11614 96 TVEENLAMGGFFAE---R-D---QF-----------------------------QERIKWVYELFPRLHERRIQR----- 134 (237)
T ss_pred cHHHHHHHhhhccC---h-h---HH-----------------------------HHHHHHHHHHHHHHHHHHhCc-----
Confidence 99999988642110 0 0 00 01123345555 355444433
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+.| ||.++|+..++.+++|++++|++
T Consensus 135 ~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~t-iii~sH~~~~~~~~~d~i~~l~~ 212 (237)
T PRK11614 135 AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMT-IFLVEQNANQALKLADRGYVLEN 212 (237)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCE-EEEEeCcHHHHHhhCCEEEEEeC
Confidence 346999999999999999999999999999999999999999999998754 3444 55577888899999999999999
Q ss_pred CeEEEEcChhHHH
Q 001108 401 GQIVYQGPRELVL 413 (1156)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1156)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (237)
T PRK11614 213 GHVVLEDTGDALL 225 (237)
T ss_pred CEEEeeCCHHHHh
Confidence 9999999998764
No 314
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2.4e-35 Score=326.34 Aligned_cols=206 Identities=24% Similarity=0.390 Sum_probs=168.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 4899999999999999999999999999999999999863 22379999999987542 1246799999998888
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc----ccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1156)
+ +||+||+.++....+.... .+....++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKDK---------------------------------KELDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCcchhhHhhC
Confidence 8 9999999987543221000 00112356678889997 44444
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
. ++.|||||||||+||++|+.+|+++||||||+|||+.+...+.+.|+++.. + .+|+.++|+..++.+++|+
T Consensus 141 ~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 141 S-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDR 212 (247)
T ss_pred C-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCE
Confidence 3 456999999999999999999999999999999999999999999998754 3 4556678888899999999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001108 395 IILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1156)
|++|++|++++.|+++++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988763
No 315
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.4e-35 Score=325.60 Aligned_cols=201 Identities=29% Similarity=0.401 Sum_probs=168.4
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh--hcccceEEEec-cCCCCCCC
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCE-QNDIHSPF 955 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~-q~~~~~~~ 955 (1156)
+.+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+... ...++.++|++ |.+.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 34679999999999999999999999999999999999876 568999999976432 23456789997 55677788
Q ss_pred CCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001108 956 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035 (1156)
Q Consensus 956 ~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPT 1035 (1156)
+|++|++.+...++. ...++..+.+.++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999999988654432 223344556788999999987777653 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1036 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1036 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999998764 899999999986 47788999999986 6777654
No 316
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=338.59 Aligned_cols=223 Identities=16% Similarity=0.208 Sum_probs=178.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC--CeEEEEEEEcCc
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGY 932 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~~~~G~i~i~g~ 932 (1156)
.+.++|++..|+.. .+...+|+||||+|++||++||+|+||||||||+++|+|.... .+..|+|.++|.
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 36789998887532 1235799999999999999999999999999999999998642 246799999998
Q ss_pred cCCh---hc----ccceEEEeccCCC--CCCCCCHHHHHHHHHHhhCCCC---CChHHHHHHHHHHHHHcCCCccc---c
Q 001108 933 PKKQ---ET----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPLR---Q 997 (1156)
Q Consensus 933 ~~~~---~~----~~~~~gyv~q~~~--~~~~~Tv~e~l~~~~~lr~~~~---~~~~~~~~~v~~~l~~l~l~~~~---~ 997 (1156)
++.. .. +++.++||+|++. +.|.+||.+++.+......... ....+.++.+.++++.++|.+.. +
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~ 153 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMR 153 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHh
Confidence 7532 11 2346999999986 5688999999976432111000 11123456788999999997532 3
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcC
Q 001108 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFD 1076 (1156)
Q Consensus 998 ~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d 1076 (1156)
.. +.+|||||||||+||+||+.+|+||||||||+|||+.++..|+++|+++.++ |.|||++|||++ .+.+.+|
T Consensus 154 ~~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~d 227 (330)
T PRK15093 154 SF-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWAD 227 (330)
T ss_pred CC-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCC
Confidence 33 3579999999999999999999999999999999999999999999999864 999999999987 4778899
Q ss_pred eEEEEecCcEEEEecCC
Q 001108 1077 ELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1077 ~v~~l~~Gg~~~~~g~~ 1093 (1156)
++++|.+ |++++.|+.
T Consensus 228 ri~vm~~-G~ive~g~~ 243 (330)
T PRK15093 228 KINVLYC-GQTVETAPS 243 (330)
T ss_pred EEEEEEC-CEEEEECCH
Confidence 9999986 799999974
No 317
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-35 Score=336.69 Aligned_cols=214 Identities=21% Similarity=0.236 Sum_probs=172.9
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CceeEEEEcCccCCCcCc-------cceEEEEcCCC-
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEFVP-------QRTAAYISQHD- 235 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d- 235 (1156)
..+|+||||+|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|.++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 469999999999999999999999999999999999987421 128999999998765432 13699999987
Q ss_pred -CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 236 -NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
.+.+.+||.+++....+...... ..+....++++|+.+||++..+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~---------------------------------~~~~~~~~~~~L~~~gL~~~~~- 145 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGN---------------------------------KKTRRQRAIDLLNQVGIPDPAS- 145 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCC---------------------------------HHHHHHHHHHHHHHCCCCChHH-
Confidence 47899999999876553321000 0011234677899999974211
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
+-+..+..|||||||||+||+||+.+|++||+||||+|||+.++.++++.|+++... .+.+++.++|+...+.+++|+
T Consensus 146 -~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~-~g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 146 -RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK-ENMALVLITHDLALVAEAAHK 223 (326)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCE
Confidence 112455679999999999999999999999999999999999999999999998653 345666688999999999999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|++++.|+.+++.+
T Consensus 224 i~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred EEEEECCEEEEECCHHHHhh
Confidence 99999999999999988753
No 318
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-35 Score=321.97 Aligned_cols=215 Identities=26% Similarity=0.337 Sum_probs=180.2
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-C-CCCceeEEEEcCccCCCcCc-------cceEEEEcCC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-P-TLKVSGTVTYNGHDMDEFVP-------QRTAAYISQH 234 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~-~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~ 234 (1156)
...+++||||.+++||+++|+|.|||||||+.++|+|+++ + ....+|+|.|+|.++-.+.. .+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4569999999999999999999999999999999999998 4 33568999999998655432 2579999998
Q ss_pred C--CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccc
Q 001108 235 D--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1156)
Q Consensus 235 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1156)
+ .+.|.+||.+.+.-..+.+.... ..++...++.++|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHH
Confidence 5 67899999998876654321100 0112234567789999998642
Q ss_pred cccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 001108 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1156)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~ 392 (1156)
.+-+.++.+|||||||||.||.||+.+|++||.|||||+||..++.+|++.|+++.+ ..++.++.|+|+..-+.++|
T Consensus 145 --~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 --RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIA 221 (316)
T ss_pred --HHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhc
Confidence 234567889999999999999999999999999999999999999999999999876 56778888999999999999
Q ss_pred CeEEEEcCCeEEEEcChhHHH
Q 001108 393 DDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 393 D~iilL~~G~iv~~G~~~~~~ 413 (1156)
|+|+||..|+||+.|+.+++.
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999874
No 319
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.6e-35 Score=322.23 Aligned_cols=196 Identities=24% Similarity=0.356 Sum_probs=160.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1156)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 45999999999999999999999999999999999999998 9999999998755332 1569999999888
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++.+||+||+.++........ .+....+..+++.+||++..+..+
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 139 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKSV----------------------------------KEAKERAYEMLEKVGLEHRINHRP- 139 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh-
Confidence 889999999988653221100 001123456788999987666544
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++...+.| |+.++|+..++. .+|+|++
T Consensus 140 ----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~tH~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 140 ----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTS-FLVVTHDLELAK-KLDRVLE 213 (221)
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHh-hcCEEEE
Confidence 4699999999999999999999999999999999999999999999876533444 555667777764 5899999
Q ss_pred EcCCeEE
Q 001108 398 LSDGQIV 404 (1156)
Q Consensus 398 L~~G~iv 404 (1156)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
No 320
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.2e-35 Score=321.72 Aligned_cols=194 Identities=27% Similarity=0.395 Sum_probs=162.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 4999999999999999999999999999999999999998 999999999875432 2357999999998999
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.++....+.. . .+....++++++.+||++..++.+
T Consensus 92 ~~t~~~~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 134 (214)
T cd03292 92 DRNVYENVAFALEVTGVP-P---------------------------------REIRKRVPAALELVGLSHKHRALP--- 134 (214)
T ss_pred CCcHHHHHHHHHHHcCCC-H---------------------------------HHHHHHHHHHHHHcCCHHHhhCCh---
Confidence 999999999875432210 0 001123567788899987666554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+ ++|+.++|+..++.+++|++++|+
T Consensus 135 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~-~tiiivtH~~~~~~~~~d~i~~l~ 210 (214)
T cd03292 135 --AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AG-TTVVVATHAKELVDTTRHRVIALE 210 (214)
T ss_pred --hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEEe
Confidence 46999999999999999999999999999999999999999999998754 34 455667788889999999999999
Q ss_pred CCeE
Q 001108 400 DGQI 403 (1156)
Q Consensus 400 ~G~i 403 (1156)
+|++
T Consensus 211 ~G~~ 214 (214)
T cd03292 211 RGKL 214 (214)
T ss_pred CCcC
Confidence 9974
No 321
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-35 Score=331.98 Aligned_cols=204 Identities=26% Similarity=0.366 Sum_probs=167.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCC-CCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.+
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (271)
T PRK13632 23 NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGA 99 (271)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcc
Confidence 4899999999999999999999999999999999999998 999999999875432 2467999999863 67789
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.++....+... .+....++++++.+||.+..++.+
T Consensus 100 tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 140 (271)
T PRK13632 100 TVEDDIAFGLENKKVPP----------------------------------KKMKDIIDDLAKKVGMEDYLDKEP----- 140 (271)
T ss_pred cHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCCc-----
Confidence 99999988653221100 001124567889999987777655
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++....+.|+|+ ++|+..++. .+|++++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii-~sH~~~~~~-~~d~v~~l~~G 218 (271)
T PRK13632 141 QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLIS-ITHDMDEAI-LADKVIVFSEG 218 (271)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE-EEechhHHh-hCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999876532345444 566666664 79999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
++++.|+.+++.
T Consensus 219 ~i~~~g~~~~~~ 230 (271)
T PRK13632 219 KLIAQGKPKEIL 230 (271)
T ss_pred EEEEecCHHHHh
Confidence 999999988764
No 322
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-35 Score=324.03 Aligned_cols=211 Identities=26% Similarity=0.373 Sum_probs=177.6
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.+. . ++|+|+||+|++||++||+|+||||||||+++|+|... +..|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~ 65 (235)
T cd03299 2 KVENLSKDWK-------------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITN 65 (235)
T ss_pred eeEeEEEEeC-------------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCc
Confidence 4677776653 1 27999999999999999999999999999999999866 568999999987643
Q ss_pred h-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001108 937 E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1156)
Q Consensus 937 ~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 1015 (1156)
. ..++.++|++|++.+++.+|+.||+.+..... .....+..+.+.++++.++|.+..+..+ ..||||||||
T Consensus 66 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 137 (235)
T cd03299 66 LPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQR 137 (235)
T ss_pred CChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHH
Confidence 1 23457999999999998999999998764332 1223344556788999999988777663 5699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1016 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
++||+||+.+|++|+|||||+|||+.++..+++.|+++..+ |+|||++||++. ++.+.||++++|++ |++++.|+.
T Consensus 138 l~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 138 VAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999999998764 999999999986 47788999999986 688888874
No 323
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-35 Score=334.21 Aligned_cols=205 Identities=24% Similarity=0.357 Sum_probs=169.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-------CccceEEEEcCCCC-
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDN- 236 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-------~~~~~~~yv~Q~d~- 236 (1156)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 35999999999999999999999999999999999999998 99999999987532 12357999999862
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-cccccc
Q 001108 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1156)
.+..+||+||+.|+....+... .+....++++++.+||. ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFSE----------------------------------DEAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhHhhCC
Confidence 3446899999998654321100 00112456788999996 455554
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
+ +.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.++||+|
T Consensus 143 ~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 143 P-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-A-GHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEE
Confidence 4 46999999999999999999999999999999999999999999998753 3 555666888999999999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001108 396 ILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1156)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
No 324
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.2e-35 Score=323.96 Aligned_cols=233 Identities=25% Similarity=0.320 Sum_probs=181.9
Q ss_pred EEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHH
Q 001108 119 VRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL 198 (1156)
Q Consensus 119 v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L 198 (1156)
|+.+|++.++....+ -+++.|...+.+ ..+...+++|+|+|+++++|++++|+|||||||||||++|
T Consensus 1 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~----------~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i 67 (236)
T cd03267 1 IEVSNLSKSYRVYSK---EPGLIGSLKSLF----------KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKIL 67 (236)
T ss_pred CceecchhhccCcCC---ccccchhHHHHH----------hcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 356788888865322 233444444332 1233446799999999999999999999999999999999
Q ss_pred hcCCCCCCCceeEEEEcCccCCCc--CccceEEEEc-CCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCC
Q 001108 199 AGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYIS-QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275 (1156)
Q Consensus 199 ~G~~~~~~~~~G~V~~nG~~~~~~--~~~~~~~yv~-Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1156)
+|.++|+ +|+|.++|.++... ..++.++|++ |++.+++.+||+||+.+.....+...
T Consensus 68 ~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~----------------- 127 (236)
T cd03267 68 SGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP----------------- 127 (236)
T ss_pred hCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCH-----------------
Confidence 9999998 99999999875332 2245799997 55667789999999988654322110
Q ss_pred CCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCC
Q 001108 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 355 (1156)
Q Consensus 276 ~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD 355 (1156)
++....++.+++.+||++..|+.++ .||||||||++||++|+.+|++++|||||+|||
T Consensus 128 -----------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 128 -----------------ARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred -----------------HHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 0011234667888999988887664 599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEc
Q 001108 356 SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1156)
Q Consensus 356 ~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G 407 (1156)
+.++..+.+.|+++++.. +.+|+.++|+..++.+++|++++|.+|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRER-GTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999876533 445555778888899999999999999998765
No 325
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-35 Score=320.32 Aligned_cols=191 Identities=25% Similarity=0.385 Sum_probs=162.5
Q ss_pred eeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-------hcccceEEEeccCCCCCCCCCH
Q 001108 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 958 (1156)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~~~~Tv 958 (1156)
||||+|++ |+++|+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999875 468999999976531 1234579999999998889999
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001108 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1156)
Q Consensus 959 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgL 1038 (1156)
+||+.+..... .....++.+.++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 1223445678899999998766655 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1039 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
|+.+++.+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999765 899999999986 46788999999986 6777654
No 326
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.6e-35 Score=320.66 Aligned_cols=193 Identities=29% Similarity=0.415 Sum_probs=161.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLP 92 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhcc
Confidence 4999999999999999999999999999999999999988 999999999876532 2357999999988888
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.++....+... ......++++++.+||++..++.+
T Consensus 93 ~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 135 (214)
T TIGR02673 93 DRTVYENVALPLEVRGKKE----------------------------------REIQRRVGAALRQVGLEHKADAFP--- 135 (214)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh---
Confidence 9999999998754322100 001123567888999987666554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+ .+|+.++|+..++.++||++++|+
T Consensus 136 --~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~i~~l~ 211 (214)
T TIGR02673 136 --EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RG-TTVIVATHDLSLVDRVAHRVIILD 211 (214)
T ss_pred --hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhcCEEEEec
Confidence 46999999999999999999999999999999999999999999998754 34 455567788889999999999999
Q ss_pred CCe
Q 001108 400 DGQ 402 (1156)
Q Consensus 400 ~G~ 402 (1156)
+|+
T Consensus 212 ~G~ 214 (214)
T TIGR02673 212 DGR 214 (214)
T ss_pred CCC
Confidence 985
No 327
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-35 Score=325.12 Aligned_cols=211 Identities=21% Similarity=0.289 Sum_probs=176.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++. + ..||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 568889888741 1 238999999999999999999999999999999876 56899999998754
Q ss_pred hh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.. ...+.++|++|++.+++.+|+.||+.+..... ... .+..++.++++++.+++.+..++.+ ..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 31 12456999999999999999999998753211 111 1234566889999999988777764 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 899999999987 47788999999986 688898874
No 328
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.7e-35 Score=330.85 Aligned_cols=224 Identities=21% Similarity=0.253 Sum_probs=179.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++.+.. +...+.+.+|+|+||+|++||++||+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 3788999988742110 000012469999999999999999999999999999999999876 5689999999876
Q ss_pred Ch---hcccceEEEeccCCC--CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCC
Q 001108 935 KQ---ETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~--~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~L 1008 (1156)
.. ...++.++|++|++. +++.+|+.+++.+...... ........+.++++++.++|. ...+.. +..|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhc
Confidence 42 123356999999975 5677899999988654431 223334455688999999994 455544 3579
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
|||||||++||+||+.+|+||||||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.||++++|++ |++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i 228 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEV 228 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998764 899999999987 57778999999985 688
Q ss_pred EEecCC
Q 001108 1088 IYVGPL 1093 (1156)
Q Consensus 1088 ~~~g~~ 1093 (1156)
++.|+.
T Consensus 229 ~~~~~~ 234 (267)
T PRK15112 229 VERGST 234 (267)
T ss_pred EecCCH
Confidence 888764
No 329
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-35 Score=331.96 Aligned_cols=206 Identities=26% Similarity=0.353 Sum_probs=169.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC----ccceEEEEcCCCC-CCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHDN-HIG 239 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~----~~~~~~yv~Q~d~-~~~ 239 (1156)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 45999999999999999999999999999999999999998 999999999875421 2467999999863 344
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
..||.||+.|+....+... .+....++++++.+||+...++.+
T Consensus 100 ~~~v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~--- 142 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPP----------------------------------EEIRERVDESLKKVGMYEYRRHAP--- 142 (280)
T ss_pred cccHHHHHHhhHhhcCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc---
Confidence 5799999998754322100 001224677899999988777665
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++....+.| |+.++|+..++.. +|++++|+
T Consensus 143 --~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~t-illvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 143 --HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGIT-IILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecChHHHhc-CCEEEEEE
Confidence 4699999999999999999999999999999999999999999999876533444 5556777777765 99999999
Q ss_pred CCeEEEEcChhHHHH
Q 001108 400 DGQIVYQGPRELVLE 414 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1156)
+|++++.|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 219 SGKVVMEGTPKEIFK 233 (280)
T ss_pred CCEEEEecCHHHHhc
Confidence 999999999988753
No 330
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-35 Score=326.72 Aligned_cols=206 Identities=21% Similarity=0.301 Sum_probs=164.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 48999999999999999999999999999999999998620 1289999999886421 1246799999987777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc----ccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1156)
.+||+||+.|+....+.... .+....++..++.+|+. +..++
T Consensus 101 -~~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 -LMSIYDNISYGPKIHGTKDK---------------------------------KKLDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred -cCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHhCCchhhHHHHhC
Confidence 49999999987543211000 00112345566777763 33444
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
. ++.|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++. .+ ++||.++|+..++.+++|+
T Consensus 147 ~-----~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 147 N-----ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK--ES-YTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhCCE
Confidence 3 45799999999999999999999999999999999999999999999874 24 4555678888899999999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001108 395 IILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1156)
|++|++|+++..|+++++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
No 331
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.6e-36 Score=292.24 Aligned_cols=197 Identities=26% Similarity=0.381 Sum_probs=170.6
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-------hcccceEEEeccCCC
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDI 951 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~ 951 (1156)
+...+|++|++.|++||.+||+|||||||||||-+|+|+.. +.+|+|.+.|.+... ..+.+.+|+|+|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 56789999999999999999999999999999999999887 568999999998643 123468999999999
Q ss_pred CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001108 952 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031 (1156)
Q Consensus 952 ~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illL 1031 (1156)
+.|++|..||+.....++.... .+......+.++.+||.+-.+.+. .+|||||+|||+||||++..|+|||-
T Consensus 99 Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~vGLg~Rl~HyP-----~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGESS---ADSRAGAKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHhCcccccccCc-----cccCchHHHHHHHHHHhcCCCCEEec
Confidence 9999999999999998876322 223445678899999987666553 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1032 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1032 DEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
||||.+||..+...|.+++-.+.+ .|.|.|++||||. ....|||.+-|.. |+++
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~ 225 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLV 225 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceec
Confidence 999999999999999999988764 5999999999986 5788999999986 5654
No 332
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-35 Score=330.76 Aligned_cols=205 Identities=25% Similarity=0.362 Sum_probs=170.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCC-CCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (1156)
.+|+|||+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 3899999999999999999999999999999999999998 999999999875432 2356999999863 35568
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.++....+... .+....++.+++.+||.+..++.+
T Consensus 95 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 135 (277)
T PRK13652 95 TVEQDIAFGPINLGLDE----------------------------------ETVAHRVSSALHMLGLEELRDRVP----- 135 (277)
T ss_pred cHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCCc-----
Confidence 99999988654321100 011124567889999987777655
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.||||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++... .+++|+.++|+..++.+.||+|++|++|
T Consensus 136 ~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 136 HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET-YGMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999987653 2455566788888999999999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998875
No 333
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-35 Score=327.11 Aligned_cols=205 Identities=33% Similarity=0.511 Sum_probs=170.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (258)
T PRK13548 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFT 92 (258)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCC
Confidence 4999999999999999999999999999999999999988 9999999988754322 356999999988878899
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.++....+. .. + +....++.+++.+||.+..++.+ .
T Consensus 93 v~e~l~~~~~~~~~-~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 133 (258)
T PRK13548 93 VEEVVAMGRAPHGL-SR-A--------------------------------EDDALVAAALAQVDLAHLAGRDY-----P 133 (258)
T ss_pred HHHHHHhhhcccCC-Cc-H--------------------------------HHHHHHHHHHHHcCCHhHhcCCc-----c
Confidence 99999886422110 00 0 01123566788999987666655 4
Q ss_pred CCChhHHHHHHHHHHHh------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 323 GISGGQKKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~------~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
.|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|+++.+..+ .+||.++|+..++.+++|+|+
T Consensus 134 ~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~ 212 (258)
T PRK13548 134 QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERG-LAVIVVLHDLNLAARYADRIV 212 (258)
T ss_pred cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhcCEEE
Confidence 69999999999999999 59999999999999999999999999998763334 455567788889999999999
Q ss_pred EEcCCeEEEEcChhHHH
Q 001108 397 LLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1156)
+|++|++++.|+++++.
T Consensus 213 ~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 213 LLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEECCEEEeeCCHHHHh
Confidence 99999999999987764
No 334
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.9e-35 Score=342.56 Aligned_cols=194 Identities=23% Similarity=0.376 Sum_probs=168.4
Q ss_pred eeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-------hcccceEEEeccCCCCCCCCCH
Q 001108 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 958 (1156)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~~~~Tv 958 (1156)
|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.+... ...++.+||++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 9999999999999999999999999999999876 468999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001108 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1156)
Q Consensus 959 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgL 1038 (1156)
+||+.|+.... ...+.++.++++++.++|.+..++.+ ..|||||||||+|||||+.+|++|||||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999865321 12234456889999999988777763 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1039 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|+.++..+++.|+++.++ |+|||++||+++ ++...+|++++|++ |++++.|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999998765 899999999987 57788999999986 688888874
No 335
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-35 Score=326.76 Aligned_cols=220 Identities=22% Similarity=0.295 Sum_probs=172.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.+++.+
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (255)
T PRK11300 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREM 95 (255)
T ss_pred EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCC
Confidence 4999999999999999999999999999999999999998 9999999998765332 23589999999999999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.++....... +...... +. +... ....+....++.+++.+||.+..+..+
T Consensus 96 tv~enl~~~~~~~~~~---~~~~~~~------~~-~~~~---------~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 151 (255)
T PRK11300 96 TVIENLLVAQHQQLKT---GLFSGLL------KT-PAFR---------RAESEALDRAATWLERVGLLEHANRQA----- 151 (255)
T ss_pred cHHHHHHHhhhccccc---hhhhhhc------cc-cccc---------cchhHHHHHHHHHHHhCChhhhhhCCh-----
Confidence 9999999864311000 0000000 00 0000 000011234567888999987666554
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+ ..+++||.++|+..++.++||++++|++|
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN-EHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHh-hcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998765 32455666788889999999999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
++++.|+++++.
T Consensus 231 ~i~~~~~~~~~~ 242 (255)
T PRK11300 231 TPLANGTPEEIR 242 (255)
T ss_pred eEEecCCHHHHh
Confidence 999999988763
No 336
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-35 Score=326.06 Aligned_cols=215 Identities=26% Similarity=0.300 Sum_probs=174.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC--C-CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478899998874 2469999999999999999999999999999999999632 1 12479999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ..+++.++|++|++.+++ .||+||+.+....+. ....+..++.+.++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87532 234567999999988877 899999988654321 1122233456788899988753 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++||+||+.+|++|||||||+|||+.++..++++|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 699999999986 5778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |++++.|+.
T Consensus 222 ~-G~i~~~g~~ 231 (252)
T PRK14239 222 D-GDLIEYNDT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 688888874
No 337
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-35 Score=325.67 Aligned_cols=215 Identities=21% Similarity=0.237 Sum_probs=176.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 467899988773 246899999999999999999999999999999999975421 2579999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ...++.+||++|++.+++ .|++||+.|....... ......++.++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87632 233567999999998887 8999999987543311 122344556788999998753 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||+|||||++||++|+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 457999999999999999999999999999999999999999999999876 689999999986 5778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |++++.|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14270 221 M-GDLIEFNKT 230 (251)
T ss_pred C-CeEEEeCCH
Confidence 6 688888874
No 338
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.7e-35 Score=323.90 Aligned_cols=210 Identities=23% Similarity=0.346 Sum_probs=170.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 16 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (242)
T TIGR03411 16 KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL 92 (242)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCC
Confidence 4999999999999999999999999999999999999998 9999999988754332 24699999999999999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.++..... ..+...... ...+....++++++.+|+++..++.+
T Consensus 93 tv~~nl~~~~~~~~--~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (242)
T TIGR03411 93 TVFENLELALPRDK--SVFASLFFR------------------------LSAEEKDRIEEVLETIGLADEADRLA----- 141 (242)
T ss_pred CHHHHHHHhhhccc--ccccccccc------------------------cHHHHHHHHHHHHHHcCCchhhcCCh-----
Confidence 99999988643110 000000000 00011234677889999987666554
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++.. + .+||.++|+..++.++||+|++|++|
T Consensus 142 ~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g 218 (242)
T TIGR03411 142 GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--K-HSVVVVEHDMEFVRSIADKVTVLHQG 218 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--C-CEEEEEECCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998753 3 45556788888999999999999999
Q ss_pred eEEEEcChhHH
Q 001108 402 QIVYQGPRELV 412 (1156)
Q Consensus 402 ~iv~~G~~~~~ 412 (1156)
++++.|+.+++
T Consensus 219 ~~~~~~~~~~~ 229 (242)
T TIGR03411 219 SVLAEGSLDQV 229 (242)
T ss_pred eEEeeCCHHHH
Confidence 99999998775
No 339
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=341.58 Aligned_cols=190 Identities=23% Similarity=0.379 Sum_probs=166.6
Q ss_pred eeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-------hcccceEEEeccCCCCCCCCCH
Q 001108 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 958 (1156)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~~~~Tv 958 (1156)
|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.+... ...++.+||++|+..+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999876 568999999977532 1235679999999999999999
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001108 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1156)
Q Consensus 959 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgL 1038 (1156)
+||+.|+.. ...++.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988632 112356789999999988777763 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1039 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|+.++..+++.|+++.++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 213 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPL 213 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCH
Confidence 999999999999998765 899999999986 57889999999986 688888874
No 340
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-35 Score=328.85 Aligned_cols=215 Identities=23% Similarity=0.319 Sum_probs=172.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCC-CCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 4899999999999999999999999999999999999998 999999999875432 2457999999864 67888
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
|+++|+.|.....+... .+....++.+++.+||.+..++.+
T Consensus 100 ~v~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 140 (269)
T PRK13648 100 IVKYDVAFGLENHAVPY----------------------------------DEMHRRVSEALKQVDMLERADYEP----- 140 (269)
T ss_pred cHHHHHHhhHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCc-----
Confidence 99999988754321100 001123566788999987666544
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.|||||||||+||+|++.+|+++||||||+|||+.++..+.+.|+++....+.|+ +.++|+..++.. +|+|++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~ti-iivtH~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITI-ISITHDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE-EEEecCchHHhc-CCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998754334454 446666677765 9999999999
Q ss_pred eEEEEcChhHHHH---HHHhcCCCCC
Q 001108 402 QIVYQGPRELVLE---FFASMGFRCP 424 (1156)
Q Consensus 402 ~iv~~G~~~~~~~---~f~~~G~~~p 424 (1156)
++++.|+++++.+ .+...|+++|
T Consensus 219 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 219 TVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred EEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 9999999987643 3334444443
No 341
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-35 Score=325.31 Aligned_cols=215 Identities=21% Similarity=0.290 Sum_probs=175.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|..... +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 477899988874 235899999999999999999999999999999999964321 2579999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.++++++.+++.+ ..+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87642 234567999999988877 8999999987543311 122334566788888888753 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. +++|||++||+++ ++.+.+|++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999985 4899999999986 4778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 220 ~-G~i~~~~~~ 229 (250)
T PRK14240 220 N-GEIVEFGDT 229 (250)
T ss_pred C-CEEEEeCCH
Confidence 6 688888763
No 342
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-35 Score=326.72 Aligned_cols=219 Identities=19% Similarity=0.247 Sum_probs=175.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC--C-eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g 931 (1156)
.+.++|+++.++ ++.+|+|+||+|++||++||+|+||||||||+++|+|...+ . +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 478999998774 24699999999999999999999999999999999997541 1 1479999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
.++.. ...++.+||++|++.+++. ||+||+.|....+. ....++..+.++++++.+++.+........ .+.
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHT-QAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhC-Ccc
Confidence 87531 2345679999999888875 99999988654321 112233445678889999885421111111 145
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
+||||||||++||++|+.+|+||||||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.||++++|++ |+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 231 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GE 231 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999864 799999999987 47789999999986 78
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
++..|+.
T Consensus 232 i~~~g~~ 238 (259)
T PRK14274 232 LVECNDT 238 (259)
T ss_pred EEEECCH
Confidence 8888874
No 343
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-35 Score=330.50 Aligned_cols=203 Identities=27% Similarity=0.395 Sum_probs=168.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC----ccceEEEEcCCCC-CCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHDN-HIGE 240 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~----~~~~~~yv~Q~d~-~~~~ 240 (1156)
.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 3999999999999999999999999999999999999998 999999999875432 2357999999864 4677
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1156)
.||+||+.|+....+... .+....++++++.+||.+..++.+
T Consensus 93 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~---- 134 (274)
T PRK13644 93 RTVEEDLAFGPENLCLPP----------------------------------IEIRKRVDRALAEIGLEKYRHRSP---- 134 (274)
T ss_pred chHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCCc----
Confidence 899999998754321100 001124567788999987777655
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
+.|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++.. . +++|+.++|+..++ ..+|+|++|++
T Consensus 135 -~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~~tH~~~~~-~~~d~v~~l~~ 210 (274)
T PRK13644 135 -KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-K-GKTIVYITHNLEEL-HDADRIIVMDR 210 (274)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHH-hhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998754 3 44555567777777 56999999999
Q ss_pred CeEEEEcChhHHH
Q 001108 401 GQIVYQGPRELVL 413 (1156)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1156)
|++++.|+.+++.
T Consensus 211 G~i~~~g~~~~~~ 223 (274)
T PRK13644 211 GKIVLEGEPENVL 223 (274)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988764
No 344
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-35 Score=330.31 Aligned_cols=204 Identities=23% Similarity=0.349 Sum_probs=166.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-------ccceEEEEcCCCC-C
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDN-H 237 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-------~~~~~~yv~Q~d~-~ 237 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQ 97 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhhh
Confidence 4999999999999999999999999999999999999998 999999999875421 2356999999852 3
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-cccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMV 316 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~v 316 (1156)
+...||+||+.|.....+... .+....++.+++.+||.. ..+..
T Consensus 98 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (280)
T PRK13649 98 LFEETVLKDVAFGPQNFGVSQ----------------------------------EEAEALAREKLALVGISESLFEKN- 142 (280)
T ss_pred hccccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhCC-
Confidence 345799999988653321100 001123566788899963 44444
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
++.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.. . +++||.++|+..++.+++|+++
T Consensus 143 ----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~~~~~~~~d~i~ 216 (280)
T PRK13649 143 ----PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-S-GMTIVLVTHLMDDVANYADFVY 216 (280)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhCCEEE
Confidence 456999999999999999999999999999999999999999999998754 3 4455557788888999999999
Q ss_pred EEcCCeEEEEcChhHHH
Q 001108 397 LLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1156)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 217 VLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999988764
No 345
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-35 Score=326.14 Aligned_cols=205 Identities=20% Similarity=0.307 Sum_probs=165.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|.. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 105 (258)
T PRK14268 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF 105 (258)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccC
Confidence 48999999999999999999999999999999999987510 1289999999886432 1245799999988777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc----ccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1156)
+ +||+||+.|+.+..+... + +....++.+++.+|+. +..++
T Consensus 106 ~-~tv~enl~~~~~~~~~~~--~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 150 (258)
T PRK14268 106 P-MSIYDNVAYGPRIHGANK--K--------------------------------DLDGVVENALRSAALWDETSDRLKS 150 (258)
T ss_pred c-ccHHHHHHHHHHHcCCCH--H--------------------------------HHHHHHHHHHHHcCCCcchhhhhcC
Confidence 7 899999998754322100 0 0012345677888874 22333
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+..|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++. .+ ++|+.++|+..++.+++|+
T Consensus 151 -----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~--~~-~tiiivsH~~~~~~~~~d~ 222 (258)
T PRK14268 151 -----PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK--KD-YTIVIVTHNMQQAARISDY 222 (258)
T ss_pred -----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--hC-CEEEEEECCHHHHHHhCCE
Confidence 345799999999999999999999999999999999999999999999874 24 5556678888899999999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001108 395 IILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1156)
|++|++|++++.|+++++.
T Consensus 223 i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 223 TGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999988763
No 346
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3.8e-35 Score=326.51 Aligned_cols=204 Identities=25% Similarity=0.355 Sum_probs=168.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc----------------CccceEE
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----------------VPQRTAA 229 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~----------------~~~~~~~ 229 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (257)
T PRK10619 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLT 95 (257)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhceE
Confidence 4999999999999999999999999999999999999988 99999999876421 1135799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCC
Q 001108 230 YISQHDNHIGEMTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1156)
Q Consensus 230 yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (1156)
||+|++.+++.+||+||+.++.. ..+.. . .+....+.++++.+||
T Consensus 96 ~v~q~~~l~~~~sv~enl~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gl 141 (257)
T PRK10619 96 MVFQHFNLWSHMTVLENVMEAPIQVLGLS-K---------------------------------QEARERAVKYLAKVGI 141 (257)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhCCCC-H---------------------------------HHHHHHHHHHHHHcCC
Confidence 99999988999999999987542 11100 0 0011235677889999
Q ss_pred cccc-cccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 001108 309 DVCA-DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1156)
Q Consensus 309 ~~~~-dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~ 387 (1156)
.+.. +. ....|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.. . +.+|+.++|+..+
T Consensus 142 ~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsH~~~~ 214 (257)
T PRK10619 142 DERAQGK-----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMGF 214 (257)
T ss_pred ChhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHH
Confidence 7643 43 3457999999999999999999999999999999999999999999998754 3 4555667888889
Q ss_pred HHhhcCeEEEEcCCeEEEEcChhHHH
Q 001108 388 TYDLFDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 388 ~~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
+..+||+|++|++|++++.|+++++.
T Consensus 215 ~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 215 ARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 99999999999999999999988764
No 347
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-35 Score=325.51 Aligned_cols=218 Identities=18% Similarity=0.243 Sum_probs=173.7
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC--C-eEEEEEEEcCcc
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISGYP 933 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g~~ 933 (1156)
+++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|.... . +..|+|.++|.+
T Consensus 7 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 73 (251)
T PRK14244 7 SVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGID 73 (251)
T ss_pred EeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEe
Confidence 5678877763 24699999999999999999999999999999999997541 1 358999999987
Q ss_pred CCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001108 934 KKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 934 ~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 1008 (1156)
+.. ...++.++|++|++.+++. |++||+.+....+. .....+..++.++++++.+++.+........ .+..|
T Consensus 74 i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~L 150 (251)
T PRK14244 74 VYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFEL 150 (251)
T ss_pred hHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-ChhhC
Confidence 532 1245679999999888775 99999988643331 1112233445678899999986521111111 13579
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
|||||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.||++++|++ |+++
T Consensus 151 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~ 227 (251)
T PRK14244 151 SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIV 227 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999985 4899999999987 47788999999986 6888
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
+.|+.
T Consensus 228 ~~~~~ 232 (251)
T PRK14244 228 EYNTT 232 (251)
T ss_pred EeCCH
Confidence 88764
No 348
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=100.00 E-value=5.2e-34 Score=359.03 Aligned_cols=122 Identities=24% Similarity=0.302 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCC---CEEEE
Q 001108 956 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIFM 1031 (1156)
Q Consensus 956 ~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p---~illL 1031 (1156)
+||.|++.|...+.. .....+.++.++|... .+.. +..||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~~---------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIPK---------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhchh---------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 789999988654321 1123578999999753 3443 3579999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 001108 1032 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1093 (1156)
Q Consensus 1032 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~-----~Gg~~~~~g~~ 1093 (1156)
||||+|||+.....+++.|+++.++|.|||+++|+++ ..+.+|+++.|. +||++++.|+.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 9999999999999999999999888999999999985 346899999995 57899999974
No 349
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-35 Score=323.72 Aligned_cols=200 Identities=25% Similarity=0.398 Sum_probs=165.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++ .|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 4899999999999999999999999999999999999998 999999998875432 2467999999877775 69
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-cccccccccccc
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMI 321 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 321 (1156)
|+||+.++....+ . ....++.+++.+||+ +..++ .+
T Consensus 93 v~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~ 129 (241)
T PRK14250 93 VKDNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYATR-----DV 129 (241)
T ss_pred HHHHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhhC-----Cc
Confidence 9999987532210 0 001245678889996 34443 34
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
..|||||||||+||+|++.+|+++||||||+|||+.++..+.+.|+++....+ ++|+.++|+..++.+++|+|++|++|
T Consensus 130 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMN-LTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 57999999999999999999999999999999999999999999998764334 45556788888999999999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
+++..|++.++.
T Consensus 209 ~i~~~~~~~~~~ 220 (241)
T PRK14250 209 ILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCHHHHh
Confidence 999999988763
No 350
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=3.1e-35 Score=312.89 Aligned_cols=190 Identities=49% Similarity=0.849 Sum_probs=162.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCC--CCCeEEEEEEEcCc
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGNITISGY 932 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~--~~~~~~G~i~i~g~ 932 (1156)
.++++|+++.++.... ...+.+|+|+||+|++|++++|+||||||||||+++|+|.. . +..|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~~-------~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSPS-------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCCC-------cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 4788999988852100 01246999999999999999999999999999999999986 5 56899999998
Q ss_pred cCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001108 933 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 933 ~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 1012 (1156)
+......++.++|++|++.+++.+|++||+.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8765445677999999998888999999997643110 399999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++.++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999998777999999999986457788999999986 6777654
No 351
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-35 Score=324.72 Aligned_cols=219 Identities=23% Similarity=0.313 Sum_probs=175.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g 69 (250)
T PRK14262 3 IIEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG 69 (250)
T ss_pred eEEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 367899988773 246899999999999999999999999999999999975421 2589999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
.++.. ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.+..+..... .+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 145 (250)
T PRK14262 70 QDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNK-PGT 145 (250)
T ss_pred EEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhC-Chh
Confidence 87532 123567999999998887 899999988654321 112233445678889998886421111111 145
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
+||||||||++||+||+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~ 222 (250)
T PRK14262 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GE 222 (250)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 799999999986 47788999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
++..|+.
T Consensus 223 i~~~g~~ 229 (250)
T PRK14262 223 LIEYGPT 229 (250)
T ss_pred EEEecCH
Confidence 8888864
No 352
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-35 Score=335.13 Aligned_cols=210 Identities=20% Similarity=0.290 Sum_probs=168.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|++|++|++++|+|||||||||||++|+|..++. ...+|+|.++|+++... ..++.++||+|++.++
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~ 175 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF 175 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence 4899999999999999999999999999999999998631 01289999999998532 2356799999988766
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
..||+|||.|+....+... .+ .....+...++.++|.+..++.++.
T Consensus 176 -~~ti~eNi~~~~~~~~~~~-~~--------------------------------~~~~~~~~~l~~~~L~~~l~~~~~~ 221 (329)
T PRK14257 176 -EMSIFDNVAYGPRNNGIND-RK--------------------------------ILEKIVEKSLKSAALWDEVKDDLDK 221 (329)
T ss_pred -CCcHHHHHHhHHHhcCCCh-HH--------------------------------HHHHHHHHHHHHcCCcchhhhhhhC
Confidence 5899999998753321100 00 0111244566777776555566654
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
....|||||||||+||||++.+|+||+|||||+|||+.+...+.++|+++.. + .+|+.++|....+.+.+|+|++|
T Consensus 222 -~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~-~Tii~iTH~l~~i~~~~Driivl 297 (329)
T PRK14257 222 -AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--K-YSIIIVTHSMAQAQRISDETVFF 297 (329)
T ss_pred -CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 4557999999999999999999999999999999999999999999998643 3 45666788888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+++++.
T Consensus 298 ~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 298 YQGWIEEAGETKTIF 312 (329)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999999874
No 353
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-35 Score=334.43 Aligned_cols=222 Identities=18% Similarity=0.215 Sum_probs=179.2
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC---CeEEEEEEEc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 930 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~ 930 (1156)
..++++|+++.++. +...+|+||||+|++||++||+||||||||||+++|+|.... .+..|+|.++
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 46899999988852 124689999999999999999999999999999999997531 2458999999
Q ss_pred CccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001108 931 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 931 g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~ 1005 (1156)
|.++.. ...++.++||||++.+++ .|++||+.|+..... ....+..++.+.++++.++|.+-.+..++.. +
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~-~ 223 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNG--INDRKILEKIVEKSLKSAALWDEVKDDLDKA-G 223 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcC--CChHHHHHHHHHHHHHHcCCcchhhhhhhCC-c
Confidence 998742 234567999999998875 799999998643221 1112223445678889988754322333333 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||||||||++|||||+.+|+||+|||||+|||+.+...+++.|+++.+ ++|||++||++. .+.+.||++++|++ |
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G 300 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-G 300 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 67999999999999999999999999999999999999999999999875 799999999986 46778999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
+++..|+.
T Consensus 301 ~i~e~g~~ 308 (329)
T PRK14257 301 WIEEAGET 308 (329)
T ss_pred EEEEeCCH
Confidence 99999885
No 354
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.6e-35 Score=319.66 Aligned_cols=195 Identities=24% Similarity=0.335 Sum_probs=163.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCccccc
Confidence 4999999999999999999999999999999999999988 999999999875432 2357999999988889
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.+.....+... ++....++.+++.+||.+..++.+
T Consensus 93 ~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 135 (222)
T PRK10908 93 DRTVYDNVAIPLIIAGASG----------------------------------DDIRRRVSAALDKVGLLDKAKNFP--- 135 (222)
T ss_pred cccHHHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc---
Confidence 9999999988754322100 001123456788899987666544
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++...+|+|++|+
T Consensus 136 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~ 211 (222)
T PRK10908 136 --IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-V-GVTVLMATHDIGLISRRSYRMLTLS 211 (222)
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998754 3 4556668888899999999999999
Q ss_pred CCeEE
Q 001108 400 DGQIV 404 (1156)
Q Consensus 400 ~G~iv 404 (1156)
+|+++
T Consensus 212 ~G~i~ 216 (222)
T PRK10908 212 DGHLH 216 (222)
T ss_pred CCEEc
Confidence 99985
No 355
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-35 Score=330.56 Aligned_cols=216 Identities=24% Similarity=0.303 Sum_probs=180.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++.. ....+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 47899999887421 12358999999999999999999999999999999999876 5689999999876
Q ss_pred Ch---hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ...++.+||++|++. .++..||.||+.+..... ....++..+.++++++.++|.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234567999999974 566789999998765432 123344456788999999998877765 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++. + ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 9999999999864 4 46999999986 68888
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 221 ~g~~ 224 (277)
T PRK13642 221 EAAP 224 (277)
T ss_pred eCCH
Confidence 8874
No 356
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-35 Score=326.20 Aligned_cols=216 Identities=21% Similarity=0.286 Sum_probs=177.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC-e--EEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--ITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~--~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..... + ..|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478899998874 246899999999999999999999999999999999975422 2 479999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ...++.++|++|++.+++ .|++||+.+....+. .......++.+.++++.+++.+ ..+..
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87532 234457999999998887 899999988654332 1122334456788899988843 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 457999999999999999999999999999999999999999999999865 699999999997 5888999999998
Q ss_pred c----CcEEEEecCC
Q 001108 1083 R----GGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~----Gg~~~~~g~~ 1093 (1156)
. .|++++.|+.
T Consensus 224 ~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 224 TDESRIGQMVEFGVT 238 (259)
T ss_pred ccCCCCceEEEeCCH
Confidence 4 4899999875
No 357
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=4.5e-35 Score=327.23 Aligned_cols=206 Identities=26% Similarity=0.337 Sum_probs=169.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCC--C
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--N 236 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d--~ 236 (1156)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 46999999999999999999999999999999999999998 999999999876432 235699999986 4
Q ss_pred CCCCCCHHHHHHHHhhhc-CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-ccccc
Q 001108 237 HIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADT 314 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (1156)
+++.+||+||+.+..... +.. ..+....++.+++.+||. ...+.
T Consensus 101 ~~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLTSLD----------------------------------ESEQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred cCCCCCHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhhhC
Confidence 667899999998754211 000 000112356788899995 45554
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
. ++.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.... +++||.++|+...+.+++|+
T Consensus 147 ~-----~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 147 L-----PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAF-GTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred C-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHHhcE
Confidence 4 34699999999999999999999999999999999999999999999876532 44566678888899999999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001108 395 IILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1156)
+++|++|++++.|+++++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999998764
No 358
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-35 Score=294.65 Aligned_cols=206 Identities=26% Similarity=0.393 Sum_probs=177.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
..+|+|||+.|.+|+.++++||||||||||||+++|+.+|. .|+|.+||.+++.- ...-|.|+|++.++|-+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC--CccceeEeccCccchhhHHH
Confidence 45899999999999999999999999999999999999998 99999999987653 34568999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
+|++|+.++.|.++. .+ ..++...+...||.+..+.. +-.|
T Consensus 93 dNvafgL~l~Gi~k~-------~R---------------------------~~~a~q~l~~VgL~~~~~~~-----i~qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA-------QR---------------------------REIAHQMLALVGLEGAEHKY-----IWQL 133 (259)
T ss_pred HHHHHHHHhcCCCHH-------HH---------------------------HHHHHHHHHHhCcccccccc-----eEee
Confidence 999999999886432 11 23466788899999776544 4579
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc--CCe
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~--~G~ 402 (1156)
||||||||.|||||..+|++|+||||+.+||.-++.++.+.|-++.+..++ -++.++|+..|+.-++++++||+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk-~~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGK-QVLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCC-eEEEEeccHHHHHhhhheeEEecCCCce
Confidence 999999999999999999999999999999999999999999888875554 45558999999999999999998 589
Q ss_pred EEEEcChhHHHHH
Q 001108 403 IVYQGPRELVLEF 415 (1156)
Q Consensus 403 iv~~G~~~~~~~~ 415 (1156)
|+..=+++--..|
T Consensus 213 vv~~~~~df~rR~ 225 (259)
T COG4525 213 VVERLPLDFARRY 225 (259)
T ss_pred eeEecCCCHHHHh
Confidence 9988777644433
No 359
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=3.5e-35 Score=319.22 Aligned_cols=209 Identities=23% Similarity=0.341 Sum_probs=174.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.+... .+.+.+|+|+||++++|+++||+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5788888876310 012579999999999999999999999999999999999865 56899999998753
Q ss_pred h------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
. ...++.++|++|++.+++.+|+.||+.+...... ....++..+.+.++++.++|.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCC
Confidence 2 1245679999999999888999999998754321 123344556788999999998777665 35799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
+|||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.+ +|+|||+++|+++ +.+.||++++|++|
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g 217 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDG 217 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999876 5899999999985 45889999999864
No 360
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-35 Score=325.46 Aligned_cols=221 Identities=20% Similarity=0.261 Sum_probs=178.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.++++|+++.++ +..+|+|+||++++|+++||+|+||||||||+++|+|...+. ...|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 488999998874 235899999999999999999999999999999999986531 1369999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
.++.. ...++.++|++|++.+++ .|++||+.+....... ....+..+.+.++++.+++.+..+...+.+ +.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHKS-AL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcCC-cc
Confidence 77521 234567999999988887 8999999876433211 122333456788999998854222122211 45
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC-
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG- 1084 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~G- 1084 (1156)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++. +|+|||++||+++ ++.+.||++++|++|
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999864 4899999999987 578899999999874
Q ss_pred ---cEEEEecCC
Q 001108 1085 ---GQEIYVGPL 1093 (1156)
Q Consensus 1085 ---g~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 799999875
No 361
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-35 Score=323.62 Aligned_cols=203 Identities=26% Similarity=0.341 Sum_probs=167.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC------c---CccceEEEEcCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE------F---VPQRTAAYISQHDN 236 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~------~---~~~~~~~yv~Q~d~ 236 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 4999999999999999999999999999999999999988 9999999987631 1 12357999999998
Q ss_pred CCCCCCHHHHHHHH-hhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 001108 237 HIGEMTVRETLAFS-ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1156)
+++.+||+||+.+. ....+... .+....++.+++.+||+...+..
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~ 138 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLSK----------------------------------DQALARAEKLLERLRLKPYADRF 138 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCC
Confidence 99999999999753 22111100 00112356778899998766655
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
+ +.|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.. .+ ++++.++|+..++.+++|++
T Consensus 139 ~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~sh~~~~~~~~~d~i 211 (242)
T PRK11124 139 P-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TG-ITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhcCEE
Confidence 4 46999999999999999999999999999999999999999999998753 34 45566788888999999999
Q ss_pred EEEcCCeEEEEcChhHH
Q 001108 396 ILLSDGQIVYQGPRELV 412 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~ 412 (1156)
++|.+|++++.|+++++
T Consensus 212 ~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 212 VYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999988764
No 362
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=4.5e-35 Score=325.25 Aligned_cols=214 Identities=21% Similarity=0.274 Sum_probs=174.9
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC--CeEEEEEEEcC
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISG 931 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~~~~G~i~i~g 931 (1156)
..++++|+++.++ +.+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+..|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 3588999998762 2489999999999999999999999999999999998653 11689999999
Q ss_pred ccCChhcc-cceEEEeccCCC--CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc---ccccccCCCCC
Q 001108 932 YPKKQETF-ARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP---LRQSLVGLPGV 1005 (1156)
Q Consensus 932 ~~~~~~~~-~~~~gyv~q~~~--~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~---~~~~~~~~~~~ 1005 (1156)
.++..... ++.++|++|++. +.+..|+.+++.+.+..... .. ..+.++++++.+++.+ ..+.. +
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGK---PA--DDATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcCC---Ch--HHHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 87643222 356999999974 44668999998765432211 11 2356788999999976 23443 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
..||||||||++|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~- 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH- 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999986 47788999999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 217 G~i~~~~~~ 225 (254)
T PRK10418 217 GRIVEQGDV 225 (254)
T ss_pred CEEEEecCH
Confidence 688988874
No 363
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7e-35 Score=319.40 Aligned_cols=205 Identities=28% Similarity=0.343 Sum_probs=171.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-ccceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
++|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|+++|+++.... .++.++|++|++..++.+||+
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 4999999999999999999999999999999999999998 999999999876533 246799999998888899999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.++....+... . .....++.+++.+||++..++.+ ..|
T Consensus 91 ~nl~~~~~~~~~~~--~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~l 131 (232)
T cd03300 91 ENIAFGLRLKKLPK--A--------------------------------EIKERVAEALDLVQLEGYANRKP-----SQL 131 (232)
T ss_pred HHHHHHHHhcCCCH--H--------------------------------HHHHHHHHHHHHcCCchhhcCCh-----hhC
Confidence 99988754322100 0 01123567888999987776554 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++....+.| |+.++|+..++.+++|++++|++|+++
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~t-iii~sh~~~~~~~~~d~i~~l~~G~~~ 210 (232)
T cd03300 132 SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGIT-FVFVTHDQEEALTMSDRIAVMNKGKIQ 210 (232)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999876533445 445677778899999999999999999
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
+.|+.+++.
T Consensus 211 ~~~~~~~~~ 219 (232)
T cd03300 211 QIGTPEEIY 219 (232)
T ss_pred ecCCHHHHH
Confidence 999887663
No 364
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-35 Score=326.64 Aligned_cols=204 Identities=28% Similarity=0.397 Sum_probs=169.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc--C---ccceEEEEcCCCC-CCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--V---PQRTAAYISQHDN-HIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~--~---~~~~~~yv~Q~d~-~~~ 239 (1156)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... . .++.++|++|++. .+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 4899999999999999999999999999999999999998 99999999987421 1 2467999999853 345
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.|+....+. .+ .+....+..+++.+||.+..++.++
T Consensus 93 ~~tv~e~i~~~~~~~~~-~~---------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~-- 136 (275)
T PRK13639 93 APTVEEDVAFGPLNLGL-SK---------------------------------EEVEKRVKEALKAVGMEGFENKPPH-- 136 (275)
T ss_pred cccHHHHHHHHHHHcCC-CH---------------------------------HHHHHHHHHHHHHCCCchhhcCChh--
Confidence 67999999876422111 00 0011235678899999877776554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++.++||+|++|+
T Consensus 137 ---~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~-~~til~vtH~~~~~~~~~d~i~~l~ 211 (275)
T PRK13639 137 ---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-E-GITIIISTHDVDLVPVYADKVYVMS 211 (275)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 6999999999999999999999999999999999999999999998764 3 4556667888889999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|++++.|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (275)
T PRK13639 212 DGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999998874
No 365
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-35 Score=327.24 Aligned_cols=204 Identities=27% Similarity=0.373 Sum_probs=168.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC--c---CccceEEEEcCCCC-CCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--F---VPQRTAAYISQHDN-HIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~--~---~~~~~~~yv~Q~d~-~~~ 239 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++||+|++. .++
T Consensus 15 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 3899999999999999999999999999999999999998 9999999998742 1 12357999999864 345
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
..|+.||+.+.....+... .+....++.+++.+||.+..++.+
T Consensus 92 ~~~~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 134 (271)
T PRK13638 92 YTDIDSDIAFSLRNLGVPE----------------------------------AEITRRVDEALTLVDAQHFRHQPI--- 134 (271)
T ss_pred cccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhcCCc---
Confidence 6789999988643321100 001123566788899987766554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.. .+ ++|+.++|+..++.+++|++++|+
T Consensus 135 --~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tii~vtH~~~~~~~~~d~i~~l~ 210 (271)
T PRK13638 135 --QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QG-NHVIISSHDIDLIYEISDAVYVLR 210 (271)
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998764 34 456667888899999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|++++.|+++++.
T Consensus 211 ~G~i~~~g~~~~~~ 224 (271)
T PRK13638 211 QGQILTHGAPGEVF 224 (271)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988764
No 366
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=5.4e-35 Score=319.61 Aligned_cols=197 Identities=27% Similarity=0.332 Sum_probs=162.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 5999999999999999999999999999999999999998 9999999998765432 24699999998888
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||+||+.+.....+.. . .+....++.+++.+||.+..+..+
T Consensus 101 ~~~tv~~~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 144 (228)
T PRK10584 101 PTLNALENVELPALLRGES-S---------------------------------RQSRNGAKALLEQLGLGKRLDHLP-- 144 (228)
T ss_pred CCcCHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHHHcCCHhHhhCCh--
Confidence 9999999998865332110 0 001124567888999987666554
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..||||||||++||++|+.+|++|||||||+|||+.+...+.+.|++++...+.| |+.++|+..++ +.+|++++|
T Consensus 145 ---~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH~~~~~-~~~d~i~~l 219 (228)
T PRK10584 145 ---AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTT-LILVTHDLQLA-ARCDRRLRL 219 (228)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCHHHH-HhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999876533444 45566776776 559999999
Q ss_pred cCCeEEEE
Q 001108 399 SDGQIVYQ 406 (1156)
Q Consensus 399 ~~G~iv~~ 406 (1156)
++|+++++
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99999753
No 367
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-34 Score=316.80 Aligned_cols=202 Identities=19% Similarity=0.282 Sum_probs=154.4
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcC
Q 001108 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1156)
.|..+-.+||+|.|+ +.++++++++|-|.--..+||+||||.||||||++|.|... +..|+..-+.
T Consensus 583 ~PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~RKnh 648 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELRKNH 648 (807)
T ss_pred CCCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhhccc
Confidence 344677889998885 45679999999999999999999999999999999999776 4456554221
Q ss_pred ccCChhcccceEEEeccCCC--CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 932 YPKKQETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 932 ~~~~~~~~~~~~gyv~q~~~--~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
+-.+|+.-|... +...-|.-|.|.-.. + .+. +.....|-.+||...+++.- +..||
T Consensus 649 --------rL~iG~FdQh~~E~L~~Eetp~EyLqr~F----N--lpy----q~ARK~LG~fGL~sHAHTik----ikdLS 706 (807)
T KOG0066|consen 649 --------RLRIGWFDQHANEALNGEETPVEYLQRKF----N--LPY----QEARKQLGTFGLASHAHTIK----IKDLS 706 (807)
T ss_pred --------eeeeechhhhhHHhhccccCHHHHHHHhc----C--CCh----HHHHHHhhhhhhhhccceEe----eeecC
Confidence 224788777543 334557667664221 1 122 22456778888888777653 56799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
||||-||++|-.-++.|+||||||||++||.++...+-+.|+++ ...||+++||-.+ |.+--+.++++.+.|.--.
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEI 782 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhc
Confidence 99999999999999999999999999999999999999999877 4589999999775 6676788899887664444
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|.+
T Consensus 783 dGdF 786 (807)
T KOG0066|consen 783 DGDF 786 (807)
T ss_pred cccH
Confidence 4544
No 368
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-35 Score=329.40 Aligned_cols=208 Identities=26% Similarity=0.342 Sum_probs=168.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCC-CCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (1156)
.+|+|||++|++|++++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++||+|++. .++.+
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 4899999999999999999999999999999999999987212399999999876432 2357999999864 67789
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.|..+..+.. .++....++.+++.+||....++.+
T Consensus 101 tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~----- 141 (282)
T PRK13640 101 TVGDDVAFGLENRAVP----------------------------------RPEMIKIVRDVLADVGMLDYIDSEP----- 141 (282)
T ss_pred CHHHHHHhhHHhCCCC----------------------------------HHHHHHHHHHHHHHCCChhHhcCCc-----
Confidence 9999998865332110 0011224567889999987666544
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++....+.| |+.++|+..++ ..||++++|++|
T Consensus 142 ~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~t-vli~tH~~~~~-~~~d~i~~l~~G 219 (282)
T PRK13640 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLT-VISITHDIDEA-NMADQVLVLDDG 219 (282)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCHHHH-HhCCEEEEEECC
Confidence 5799999999999999999999999999999999999999999999876533444 55566777777 579999999999
Q ss_pred eEEEEcChhHHHH
Q 001108 402 QIVYQGPRELVLE 414 (1156)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1156)
++++.|+++++..
T Consensus 220 ~i~~~g~~~~~~~ 232 (282)
T PRK13640 220 KLLAQGSPVEIFS 232 (282)
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988753
No 369
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=100.00 E-value=1.2e-33 Score=367.98 Aligned_cols=134 Identities=22% Similarity=0.267 Sum_probs=108.2
Q ss_pred CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHh---cCCC
Q 001108 952 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS 1027 (1156)
Q Consensus 952 ~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~iA~aL~---~~p~ 1027 (1156)
.+...||.|+|.++..-......+.++..+.+ ++++.++|..+ .+.. +..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45568999999887653221112223444555 58888999775 4554 3579999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 001108 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1093 (1156)
Q Consensus 1028 illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~-----~Gg~~~~~g~~ 1093 (1156)
+|+|||||+|||+.+...+++.|+++.++|.|||+++|+++. + +.+|++++|. .||+++..|+.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 999999999999999999999999998889999999999863 4 8999999996 36899999975
No 370
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-36 Score=319.10 Aligned_cols=202 Identities=25% Similarity=0.310 Sum_probs=182.3
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-------hcccceEEEeccCCCCC
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHS 953 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~ 953 (1156)
..-++|+||+|+.||++.|||-||||||||+++|.++.. +..|+|.++|.++.. ..+++.++.|+|+..++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 456899999999999999999999999999999999887 578999999987542 12345799999999999
Q ss_pred CCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001108 954 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1033 (1156)
Q Consensus 954 ~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDE 1033 (1156)
|+.||.||..|+..++ .++++++++++.++++.+||.++.++++ .+|||||||||.|||||+.+|+||+|||
T Consensus 119 PhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecC
Confidence 9999999999998776 4567889999999999999999999884 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1034 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1034 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
|+|+|||--+..+++-|.++.++ .+|||++|||.+ |.+..-||+.+|+ +|+++..|++.
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~ 250 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPE 250 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHH
Confidence 99999999999999999888654 899999999998 6889999999997 58999999863
No 371
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-35 Score=326.66 Aligned_cols=217 Identities=22% Similarity=0.253 Sum_probs=177.6
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC---CeEEEEEEE
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITI 929 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i 929 (1156)
...++++|+++.+. ++.+|+|+||+|++||+++|+|+||||||||+++|+|.... .+.+|+|.+
T Consensus 23 ~~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i 89 (272)
T PRK14236 23 QTALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRL 89 (272)
T ss_pred CcEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEE
Confidence 34689999998874 24689999999999999999999999999999999998542 136899999
Q ss_pred cCccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----cccccc
Q 001108 930 SGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLV 1000 (1156)
Q Consensus 930 ~g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~ 1000 (1156)
+|.++.. ..+++.++|++|++.+++. |++||+.+...... ....+..++.++++++.+++.+ ..+..
T Consensus 90 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 165 (272)
T PRK14236 90 DGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHEN- 165 (272)
T ss_pred CCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCC-
Confidence 9987642 2345679999999988875 99999988654321 1112233456788899988864 22322
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 001108 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080 (1156)
Q Consensus 1001 ~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~ 1080 (1156)
+..||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ +.|||++||+++ ++.+.||++++
T Consensus 166 ----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~ 239 (272)
T PRK14236 166 ----AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAF 239 (272)
T ss_pred ----cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEE
Confidence 357999999999999999999999999999999999999999999999975 799999999986 47788999999
Q ss_pred EecCcEEEEecCC
Q 001108 1081 MKRGGQEIYVGPL 1093 (1156)
Q Consensus 1081 l~~Gg~~~~~g~~ 1093 (1156)
|++ |++++.|+.
T Consensus 240 l~~-G~i~~~g~~ 251 (272)
T PRK14236 240 MYM-GKLVEYGDT 251 (272)
T ss_pred EEC-CEEEecCCH
Confidence 986 688888874
No 372
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=5.4e-35 Score=325.54 Aligned_cols=215 Identities=24% Similarity=0.261 Sum_probs=175.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc-
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 933 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~- 933 (1156)
.++++|+++.++ ++.+|+|+||+|++|+++||+|+||||||||+++|+|... +..|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 478999998874 2368999999999999999999999999999999999876 468999999986
Q ss_pred ----CCh---hc----ccceEEEeccCCC--CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccc
Q 001108 934 ----KKQ---ET----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSL 999 (1156)
Q Consensus 934 ----~~~---~~----~~~~~gyv~q~~~--~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~ 999 (1156)
+.. .. .++.+||++|++. +.+.+|+.||+.+...... .....+.+..+.++++.+++.+ ..+..
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 432 11 2346999999974 5677899999976432211 1122234556788999999963 44544
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeE
Q 001108 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 1000 ~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
+..||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |.|||++||+++ .+.+.+|++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 466789999
Q ss_pred EEEecCcEEEEecCC
Q 001108 1079 FLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1079 ~~l~~Gg~~~~~g~~ 1093 (1156)
++|++ |++++.|+.
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 689998874
No 373
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=6.3e-34 Score=360.50 Aligned_cols=212 Identities=25% Similarity=0.365 Sum_probs=177.2
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1156)
...++++||+|+|+. ++.+|+|+|++|++|+.+||+|+||||||||+++|+|... +.+|+|.+||.
T Consensus 471 ~~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~ 536 (708)
T TIGR01193 471 NGDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGF 536 (708)
T ss_pred CCcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCE
Confidence 346999999999851 2358999999999999999999999999999999999876 56899999998
Q ss_pred cCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCC
Q 001108 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGL 1002 (1156)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~ 1002 (1156)
++.+ ..+++.+|||+|++.+++ .|++|||.++.. ++.+ ++.++++++..++.+.. |+.+|.
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e 607 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSE 607 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecC
Confidence 8643 456778999999998876 499999987521 1222 23467777777775433 445555
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
. ..+||||||||++|||||+++|+||+||||||+||+++++.+++.|+++ +|+|+|+++|+++ ..+.+|++++|+
T Consensus 608 ~-G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~ 682 (708)
T TIGR01193 608 E-GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLD 682 (708)
T ss_pred C-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEE
Confidence 3 4679999999999999999999999999999999999999999999985 4899999999986 467899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 683 ~-G~i~~~G~~ 692 (708)
T TIGR01193 683 H-GKIIEQGSH 692 (708)
T ss_pred C-CEEEEECCH
Confidence 6 789998873
No 374
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-35 Score=323.63 Aligned_cols=219 Identities=22% Similarity=0.245 Sum_probs=175.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 467888888774 246999999999999999999999999999999999976521 3589999999
Q ss_pred ccCC----hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001108 932 YPKK----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1156)
Q Consensus 932 ~~~~----~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~ 1007 (1156)
.++. ....++.++|++|++.+++ .||.||+.+...... ....+...+.+.++++.+++.+........ .+..
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKS-HAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhc-Cccc
Confidence 7753 1234567999999998887 899999987643321 111233345677888888875321111111 1357
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++ |++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 699999999987 57888999999986 688
Q ss_pred EEecCC
Q 001108 1088 IYVGPL 1093 (1156)
Q Consensus 1088 ~~~g~~ 1093 (1156)
++.|+.
T Consensus 223 ~~~g~~ 228 (249)
T PRK14253 223 VEHDDT 228 (249)
T ss_pred EEeCCH
Confidence 888874
No 375
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-36 Score=340.59 Aligned_cols=211 Identities=27% Similarity=0.423 Sum_probs=176.5
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcC
Q 001108 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1156)
.+..++|+||.++|. +++++|+||||+|++||.+||+|+|||||||++++|.+... .+|+|.|||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 345799999999985 23469999999999999999999999999999999998654 489999999
Q ss_pred ccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccC
Q 001108 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVG 1001 (1156)
Q Consensus 932 ~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~ 1001 (1156)
.+++. ...|+.+|||||+..++. -||.+|+.|+. +..+. ++|-++.+..++.+.- .+.+|
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASD----EEVVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCH----HHHHHHHHHcCcHHHHHhccccchhhHh
Confidence 98654 567889999999888765 69999999863 33333 3456666776765533 34466
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1002 ~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
+.| ..|||||||||+||||++++|+|+++|||||.||.++.+.+++.+++. ..|+|+|++.|+.+ ..+.||+|++|
T Consensus 483 erG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~l 558 (591)
T KOG0057|consen 483 ERG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIVL 558 (591)
T ss_pred hcc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCEEEEE
Confidence 654 569999999999999999999999999999999999999999999984 35899999999964 67899999999
Q ss_pred ecCcEEEEecC
Q 001108 1082 KRGGQEIYVGP 1092 (1156)
Q Consensus 1082 ~~Gg~~~~~g~ 1092 (1156)
++ |++...|+
T Consensus 559 ~n-G~v~e~gt 568 (591)
T KOG0057|consen 559 DN-GTVKEYGT 568 (591)
T ss_pred EC-CeeEEecc
Confidence 97 56777776
No 376
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-35 Score=322.84 Aligned_cols=212 Identities=24% Similarity=0.288 Sum_probs=168.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGE 240 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~ 240 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|. ...+|+|.++|.++.... .++.++|++|++.+++.
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 96 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPN 96 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCC
Confidence 4899999999999999999999999999999999998741 012899999999875432 24679999999888899
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1156)
+||+||+.++.+..+..... .+....++.+++.+||.+..... -+..
T Consensus 97 ~tv~enl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~-~~~~ 143 (250)
T PRK14247 97 LSIFENVALGLKLNRLVKSK--------------------------------KELQERVRWALEKAQLWDEVKDR-LDAP 143 (250)
T ss_pred CcHHHHHHHHHHhccccCCH--------------------------------HHHHHHHHHHHHHcCCCcchhhh-hcCC
Confidence 99999999875432110000 00112356678888886421111 1233
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. .+ ++|+.++|+..++.+.+|+|++|++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK--KD-MTIVLVTHFPQQAARISDYVAFLYK 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999874 24 4566678888889999999999999
Q ss_pred CeEEEEcChhHHH
Q 001108 401 GQIVYQGPRELVL 413 (1156)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1156)
|++++.|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (250)
T PRK14247 221 GQIVEWGPTREVF 233 (250)
T ss_pred CeEEEECCHHHHH
Confidence 9999999988764
No 377
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.9e-35 Score=317.31 Aligned_cols=201 Identities=23% Similarity=0.294 Sum_probs=172.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++ ++.+|+++||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 478899988763 2359999999999999999999999999999999999876 4689999999876
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.....++.++|++|++.+++.+|++||+.+....+. . ..++.++++++.++|.+..+..+ ..||+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543344568999999988888999999988654321 1 12345678899999987776653 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
|++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.+|+++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999998888999999999987 5888999999886
No 378
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=6.1e-35 Score=318.07 Aligned_cols=196 Identities=26% Similarity=0.341 Sum_probs=166.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .+.++|++|++.+++.+||+|
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 4999999999999999999999999999999999999998 999999998765322 357999999988899999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+.+.....+.. ...+..+++.+||++..|..+ ..||
T Consensus 90 ~~~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS 126 (223)
T TIGR03740 90 NLKVHTTLLGLP--------------------------------------DSRIDEVLNIVDLTNTGKKKA-----KQFS 126 (223)
T ss_pred HHHHHHHHcCCC--------------------------------------HHHHHHHHHHcCCcHHHhhhH-----hhCC
Confidence 998765332100 012456778899987666544 4699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1156)
||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.. .+.+ |+.++|+..++.+.+|+|++|++|++++
T Consensus 127 ~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~t-iii~sH~~~~~~~~~d~i~~l~~g~i~~ 204 (223)
T TIGR03740 127 LGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGIT-VILSSHILSEVQQLADHIGIISEGVLGY 204 (223)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCE-EEEEcCCHHHHHHhcCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999998754 3444 5557777888999999999999999999
Q ss_pred EcChh
Q 001108 406 QGPRE 410 (1156)
Q Consensus 406 ~G~~~ 410 (1156)
.|++.
T Consensus 205 ~~~~~ 209 (223)
T TIGR03740 205 QGKIN 209 (223)
T ss_pred ecChh
Confidence 99865
No 379
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.3e-35 Score=357.55 Aligned_cols=218 Identities=26% Similarity=0.328 Sum_probs=183.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++ ++.+|+||||+|++|+++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 378899988873 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Chh----cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 935 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 935 ~~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
... ..++.+||++|++.+++.+||+||+.|+...+.. ...+.++.++.+.++++.++|.+..++.+ ..||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 143 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELS 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCC
Confidence 321 1245699999999889999999999886432210 11223334566889999999988777664 4699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++|.|||++||+++ ++.+.||++++|++ |+++.
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIA 221 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 47789999999986 68888
Q ss_pred ecCCC
Q 001108 1090 VGPLG 1094 (1156)
Q Consensus 1090 ~g~~~ 1094 (1156)
.|+..
T Consensus 222 ~~~~~ 226 (501)
T PRK10762 222 EREVA 226 (501)
T ss_pred ecCcC
Confidence 88764
No 380
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.2e-33 Score=358.32 Aligned_cols=210 Identities=26% Similarity=0.388 Sum_probs=176.7
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++++||+|+|+. .++.+|+|+|++|++||.+||+|+||||||||+++|+|... +.+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEe
Confidence 46999999999862 12468999999999999999999999999999999999876 568999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 1003 (1156)
+++ ..+++.+|||+|++.+++ .|++|||.++. ++.+ ++.++++++..++.+.. ++.+|..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIP----DADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 653 456788999999998875 69999998641 2222 34467788888876543 3445544
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
..+||||||||++|||||+++|+||+||||||+||+.+++.|++.|++ .++|+|++||+++ ....||++++|++
T Consensus 613 -G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 -GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER 686 (710)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 367999999999999999999999999999999999999999999986 4899999999986 4677999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 687 -G~i~~~G~~ 695 (710)
T TIGR03796 687 -GKVVQRGTH 695 (710)
T ss_pred -CEEEEecCH
Confidence 799999874
No 381
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=6.8e-35 Score=322.07 Aligned_cols=212 Identities=26% Similarity=0.331 Sum_probs=168.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|.++..... +..++|++|++.+++
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEIP 90 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeeccccccC
Confidence 4999999999999999999999999999999999995 576 9999999998755332 234899999999999
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-cccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGD 318 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~ 318 (1156)
.+|++|++.+.......... .... ...+....++.+++.+||+. ..++.++
T Consensus 91 ~~t~~~~~~~~~~~~~~~~~------------------~~~~---------~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 142 (243)
T TIGR01978 91 GVSNLEFLRSALNARRSARG------------------EEPL---------DLLDFLKLLKAKLALLGMDEEFLNRSVN- 142 (243)
T ss_pred CcCHHHHHHHHHHHhhcccc------------------cccc---------cHHHHHHHHHHHHHHcCCchhhcccccc-
Confidence 99999999886532110000 0000 00011234677889999973 4554432
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh-cCeEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDIIL 397 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~-~D~iil 397 (1156)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+ ++||.++|+..++... +|++++
T Consensus 143 ---~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~vsH~~~~~~~~~~d~i~~ 217 (243)
T TIGR01978 143 ---EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PD-RSFLIITHYQRLLNYIKPDYVHV 217 (243)
T ss_pred ---cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CC-cEEEEEEecHHHHHhhcCCeEEE
Confidence 14999999999999999999999999999999999999999999998753 34 4555577888888888 899999
Q ss_pred EcCCeEEEEcChhHHH
Q 001108 398 LSDGQIVYQGPRELVL 413 (1156)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1156)
|++|++++.|+++++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 218 LLDGRIVKSGDVELAK 233 (243)
T ss_pred EeCCEEEEecCHHHhc
Confidence 9999999999987653
No 382
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=3.1e-35 Score=321.79 Aligned_cols=201 Identities=24% Similarity=0.316 Sum_probs=166.3
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC--eEEEEEEEcCccCChhcc-cceEEEeccCCC--CCCCCC
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISGYPKKQETF-ARISGYCEQNDI--HSPFVT 957 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~gyv~q~~~--~~~~~T 957 (1156)
+|+||||+|++|++++|+||||||||||+++|+|...+. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999986520 168999999987654322 357999999984 556789
Q ss_pred HHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC---cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001108 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN---PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034 (1156)
Q Consensus 958 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~---~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEP 1034 (1156)
+.|++.+....... .....++.++++++.+++. +..+.. +..|||||||||+|||||+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGK---LSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCc---cHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999876433211 1233456688999999997 344444 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1035 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1035 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|+|||+.++..+++.|+++.++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999987 57788999999986 688888764
No 383
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-35 Score=322.77 Aligned_cols=216 Identities=23% Similarity=0.277 Sum_probs=174.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCe---EEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~---~~G~i~i~g 931 (1156)
.+.++|+++.++ ++.+|+||||+|++||++||+||||||||||+++|+|...+.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 467888888773 2469999999999999999999999999999999999864322 379999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ..+++.++|++|++.+++.+|++||+.+...... ....+...+.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87532 2345579999999999998999999987643321 1122333455667777776642 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++||++|+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999987 4777899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |++++.|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14272 222 V-GDLVEHGPT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 688888874
No 384
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-35 Score=323.51 Aligned_cols=212 Identities=21% Similarity=0.314 Sum_probs=167.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCC--Cc---CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMD--EF---VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~nG~~~~--~~---~~~~~~~yv~Q~d~~~ 238 (1156)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ ...+|+|+++|+++. .. ..++.++|++|++.++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 4999999999999999999999999999999999998762 013899999999875 21 1245799999999899
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||+||+.++....+.....+ +....++++++.+||........ +
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKSKK--------------------------------ELDERVEWALKKAALWDEVKDRL-N 144 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCCHH--------------------------------HHHHHHHHHHHHcCCccchhhhh-c
Confidence 99999999998754321100000 01123456677888743211111 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
.....|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + .+||.++|+..++.++||+|++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 145 DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSDYVAFL 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999998753 3 45566788888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 222 YLGKLIEVGPTRKVF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
No 385
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-35 Score=330.96 Aligned_cols=205 Identities=20% Similarity=0.295 Sum_probs=166.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC----c----CccceEEEEcCCCC-
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----F----VPQRTAAYISQHDN- 236 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~----~----~~~~~~~yv~Q~d~- 236 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 4999999999999999999999999999999999999998 9999999988642 1 12457999999863
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-cccccc
Q 001108 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1156)
.+...||+||+.|+....+.. . .+....++.+++.++|+ ...++.
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~-~---------------------------------~~~~~~~~~ll~~~~L~~~~~~~~ 147 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGEN-K---------------------------------QEAYKKVPELLKLVQLPEDYVKRS 147 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCC-H---------------------------------HHHHHHHHHHHHHcCCChhHhcCC
Confidence 233569999999865322110 0 00112346678889995 455544
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
+ ..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+.. +++||.++|+..++.++||+|
T Consensus 148 ~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 148 P-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY-KKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred h-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEE
Confidence 3 4699999999999999999999999999999999999999999999876533 445556788888999999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001108 396 ILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1156)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
No 386
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-35 Score=323.63 Aligned_cols=207 Identities=22% Similarity=0.315 Sum_probs=164.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCceeEEEEcCccCCCc-----CccceEEEEcCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|..+ |+ +|+|.++|+++... ..++.++|++|++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 96 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV---EGEILLDGENIYDPHVDVVELRRRVGMVFQKP 96 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCC---ceEEEECCEEccccccCHHHHhhcEEEEecCC
Confidence 49999999999999999999999999999999999864 34 89999999887531 1245799999998
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 001108 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1156)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1156)
.+++ .||+||+.|+....+.... + .....++.+++.+||.+...+.
T Consensus 97 ~~~~-~tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~ 142 (253)
T PRK14242 97 NPFP-KSIFENVAYGLRVNGVKDK-A--------------------------------YLAERVERSLRHAALWDEVKDR 142 (253)
T ss_pred CCCc-CcHHHHHHHHHHHcCCCCH-H--------------------------------HHHHHHHHHHHHcCCchhhhHH
Confidence 7777 5999999987543221100 0 0012345567778875422222
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
. ++.++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .+ .+|+.++|+..++.+++|+|
T Consensus 143 ~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tvii~tH~~~~~~~~~d~v 218 (253)
T PRK14242 143 L-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK--AR-YTIIIVTHNMQQAARVSDVT 218 (253)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cC-CeEEEEEecHHHHHHhCCEE
Confidence 2 23456799999999999999999999999999999999999999999999873 24 45555778888999999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001108 396 ILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1156)
++|++|++++.|+++++.
T Consensus 219 ~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 219 AFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988763
No 387
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-35 Score=316.05 Aligned_cols=195 Identities=24% Similarity=0.366 Sum_probs=162.9
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1156)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999998 9999999998755432 367999999998899999999998
Q ss_pred HHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 001108 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1156)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1156)
++..... ... . +....++++++.+||++..++.+ ..|||||
T Consensus 93 ~~~~~~~-~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 133 (211)
T cd03298 93 LGLSPGL-KLT-----A----------------------------EDRQAIEVALARVGLAGLEKRLP-----GELSGGE 133 (211)
T ss_pred ccccccc-Ccc-----H----------------------------HHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHH
Confidence 7642110 000 0 01123567888999987766654 4699999
Q ss_pred HHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEc
Q 001108 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1156)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G 407 (1156)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++.... +.+|+.++|+..++.++||+|++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAET-KMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999999999876433 445555888889999999999999999998764
No 388
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.5e-35 Score=315.30 Aligned_cols=199 Identities=23% Similarity=0.294 Sum_probs=165.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+||||+|++||++||+||||||||||+++|+|... +..|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 46778887763 2469999999999999999999999999999999999876 46899999998754
Q ss_pred h--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
. ..+++.++|++|++.+++.+|+.||+.+....+.. ..++.++++++.++|.+..++. +..||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGP------GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCc------cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHH
Confidence 2 23456789999999888999999999887543211 1235678899999998776665 357999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
||++||+||+++|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++. +.+.-+|++.+
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 99999999999999999999999999999999999999987779999999999863 54433566554
No 389
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-35 Score=323.34 Aligned_cols=219 Identities=19% Similarity=0.229 Sum_probs=177.4
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC--C-eEEEEEEEc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITIS 930 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~ 930 (1156)
..+..+++++++. ++.+|+|+||+|++||++||+|+||||||||+++|+|...+ + +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFYG-------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEeC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 4567777776653 35799999999999999999999999999999999998642 1 258999999
Q ss_pred CccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001108 931 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 931 g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~ 1005 (1156)
|.++.. ..+++.++|++|++.++ .+|++||+.+....+. . ....++.++++++.+++.+......+. .+
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKV-SG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhC-Cc
Confidence 987532 23456799999998877 5999999998765432 1 123345688899999986432222221 24
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe---
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK--- 1082 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~--- 1082 (1156)
..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++. +++|||+++|+++ ++.+.||++++|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 5799999999999999999999999999999999999999999999985 4799999999987 4778999999997
Q ss_pred ----cCcEEEEecCC
Q 001108 1083 ----RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ----~Gg~~~~~g~~ 1093 (1156)
++|+++..|+.
T Consensus 226 ~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 226 SQGTRTGYLVEMGPT 240 (261)
T ss_pred ccccCCceEEEeCCH
Confidence 46899999874
No 390
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-35 Score=358.50 Aligned_cols=218 Identities=25% Similarity=0.302 Sum_probs=182.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++ ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 378899988873 2469999999999999999999999999999999999875 4689999999876
Q ss_pred Chh----cccceEEEeccCCCCCCCCCHHHHHHHHHHhh----CCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 935 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLR----LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 935 ~~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr----~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
... ..++.+||++|++.+++.+||+||+.++.... .....+.++.++.+.++++.++|.+..++.+ .
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 431 12346999999998899999999998753211 1001122344567889999999988777664 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
+|||||||||+||+||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.||++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 69999999999999999999999999999999999999999999999888999999999986 47788999999986 68
Q ss_pred EEEecCCC
Q 001108 1087 EIYVGPLG 1094 (1156)
Q Consensus 1087 ~~~~g~~~ 1094 (1156)
+++.|+..
T Consensus 223 i~~~g~~~ 230 (510)
T PRK09700 223 SVCSGMVS 230 (510)
T ss_pred Eeeecchh
Confidence 88988754
No 391
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-35 Score=322.84 Aligned_cols=219 Identities=20% Similarity=0.238 Sum_probs=174.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.++++|+++.+. ++.+|+|+||+|++|+++||+||||||||||+++|+|...+. +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 477889988774 245999999999999999999999999999999999976521 2369999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
.++.. ...++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+........ .+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLHK-SGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhhC-Ccc
Confidence 87532 2345679999999988874 999999987543321 11222345567788888875321111111 145
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.++|+++. +|+|||++||+++ ++.+.||++++|++ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 799999999999999999999999999999999999999999999985 5899999999987 47788999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
+++.|+.
T Consensus 224 i~~~~~~ 230 (251)
T PRK14249 224 LVEYGRT 230 (251)
T ss_pred EEEeCCH
Confidence 8888874
No 392
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.5e-35 Score=362.35 Aligned_cols=256 Identities=23% Similarity=0.333 Sum_probs=194.5
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++.....+|+.++++.+.+. . +....+.+...++++|+++.++.
T Consensus 284 ~~~~~~~~~ri~~~l~~~~~~-----~---~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 328 (544)
T TIGR01842 284 FSGARQAYKRLNELLANYPSR-----D---PAMPLPEPEGHLSVENVTIVPPG--------------------------- 328 (544)
T ss_pred HHHHHHHHHHHHHHHhCCccc-----c---CCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 477888889998888765441 0 01112223457999999998742
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
.+.++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 329 -----~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 400 (544)
T TIGR01842 329 -----GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQD 400 (544)
T ss_pred -----CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCC
Confidence 1134899999999999999999999999999999999999998 9999999999876543 4689999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+++ .|++||+.+... ....+.+.+.++.. ..++.++ .|++..||
T Consensus 401 ~~lf~-~ti~~Ni~~~~~----~~~~~~~~~~~~~~---------------------------~~~~~i~--~l~~gl~t 446 (544)
T TIGR01842 401 VELFP-GTVAENIARFGE----NADPEKIIEAAKLA---------------------------GVHELIL--RLPDGYDT 446 (544)
T ss_pred ccccc-ccHHHHHhccCC----CCCHHHHHHHHHHh---------------------------ChHHHHH--hCcccccc
Confidence 87765 599999985421 11111112111110 1122333 35667789
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ ..||||||||++||||++++|++++|||||||||+.++..+.+.|+++.. .++|+|+ ++|... ..+.||+
T Consensus 447 ~~~~~g-~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~-ith~~~-~~~~~d~ 522 (544)
T TIGR01842 447 VIGPGG-ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVV-ITHRPS-LLGCVDK 522 (544)
T ss_pred ccCCCc-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEE-EeCCHH-HHHhCCE
Confidence 998754 56999999999999999999999999999999999999999999987642 3456555 445444 5678999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|++++.|+++++.+
T Consensus 523 i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 523 ILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred EEEEECCEEEeeCCHHHHhh
Confidence 99999999999999988753
No 393
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-35 Score=326.04 Aligned_cols=209 Identities=23% Similarity=0.352 Sum_probs=170.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (1156)
++|+|+||++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+++.+|
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence 4999999999999999999999999999999999999988 999999998865432 2357999999888889999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|.||+.++.... .... .. . . ......++.+++.+||++..++.++
T Consensus 102 v~e~l~~~~~~~-~~~~--------------~~-~-~-------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 146 (265)
T PRK10575 102 VRELVAIGRYPW-HGAL--------------GR-F-G-------------AADREKVEEAISLVGLKPLAHRLVD----- 146 (265)
T ss_pred HHHHHHhCcccc-cccc--------------cC-C-C-------------HHHHHHHHHHHHHcCCHHHhcCCcc-----
Confidence 999998753210 0000 00 0 0 0011235678889999876666554
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++...+ ++|+.++|+..++.+++|+|++|++|+
T Consensus 147 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~-~tiii~sH~~~~i~~~~d~i~~l~~G~ 225 (265)
T PRK10575 147 SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG-LTVIAVLHDINMAARYCDYLVALRGGE 225 (265)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 6999999999999999999999999999999999999999999998765334 455567888889999999999999999
Q ss_pred EEEEcChhHHH
Q 001108 403 IVYQGPRELVL 413 (1156)
Q Consensus 403 iv~~G~~~~~~ 413 (1156)
+++.|+.+++.
T Consensus 226 i~~~~~~~~~~ 236 (265)
T PRK10575 226 MIAQGTPAELM 236 (265)
T ss_pred EEEecCHHHhc
Confidence 99999987653
No 394
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=6.3e-35 Score=317.72 Aligned_cols=193 Identities=26% Similarity=0.347 Sum_probs=160.2
Q ss_pred cCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCC
Q 001108 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 957 (1156)
Q Consensus 878 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~T 957 (1156)
++++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.+... ..+...+.+.+|
T Consensus 32 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~t 100 (224)
T cd03220 32 VGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELT 100 (224)
T ss_pred cCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCc
Confidence 345789999999999999999999999999999999999876 568999999976421 111233456799
Q ss_pred HHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001108 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037 (1156)
Q Consensus 958 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsg 1037 (1156)
|+||+.+....+. ....+.++.++++++.+++.+..++.+ ..||||||||++|||+|+.+|++|+|||||+|
T Consensus 101 v~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~g 172 (224)
T cd03220 101 GRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAV 172 (224)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999988754331 223344556788999999988777653 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1038 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1038 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||+.++..+++.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 173 LD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 173 GDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999998777899999999986 46778999999986 6777654
No 395
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-35 Score=325.75 Aligned_cols=208 Identities=25% Similarity=0.396 Sum_probs=170.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+|
T Consensus 21 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 97 (265)
T PRK10253 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT 97 (265)
T ss_pred EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCc
Confidence 4999999999999999999999999999999999999998 9999999998754322 356999999988888999
Q ss_pred HHHHHHHHhhhc-CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 243 VRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 243 V~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
|+||+.++..-. ...... .+.....++.+++.+||++..++.+
T Consensus 98 v~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (265)
T PRK10253 98 VQELVARGRYPHQPLFTRW-------------------------------RKEDEEAVTKAMQATGITHLADQSV----- 141 (265)
T ss_pred HHHHHHhCcccccccccCC-------------------------------CHHHHHHHHHHHHHcCCHHHhcCCc-----
Confidence 999998753110 000000 0001123567888999987666544
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.... +++||.++|+..++.+++|+|++|++|
T Consensus 142 ~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 142 DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREK-GYTLAAVLHDLNQACRYASHLIALREG 220 (265)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 5699999999999999999999999999999999999999999999876432 455566788888999999999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
++++.|+++++.
T Consensus 221 ~i~~~g~~~~~~ 232 (265)
T PRK10253 221 KIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
No 396
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-35 Score=343.14 Aligned_cols=213 Identities=26% Similarity=0.423 Sum_probs=180.6
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcC
Q 001108 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1156)
.+..+..+|++|.++. ++++++|+|+++++|+.+||+|+||||||||+++|+|..+ +.+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECC
Confidence 4556667799999862 2379999999999999999999999999999999999877 4689999999
Q ss_pred ccCC---hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccccc------ccCC
Q 001108 932 YPKK---QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS------LVGL 1002 (1156)
Q Consensus 932 ~~~~---~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~------~~~~ 1002 (1156)
.+.. ...++++++||+|++.+++ -|++||+.++. ++.+ ++.+.++++..+|.++.+. .+|.
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8754 4568889999999998876 59999998852 1222 3457888888888876654 3333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..+|||||+|||++||||+++++++++||||++||.++.+.|++.|.++++ ++|||++||++. ....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 4578999999999999999999999999999999999999999999999976 599999999975 567899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|..
T Consensus 529 ~-G~l~~~g~~ 538 (559)
T COG4988 529 N-GRLVEQGTH 538 (559)
T ss_pred C-CceeccCCH
Confidence 6 689998874
No 397
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-35 Score=317.13 Aligned_cols=224 Identities=23% Similarity=0.326 Sum_probs=182.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC---CCeEEEEEEEcCc
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGY 932 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~---~~~~~G~i~i~g~ 932 (1156)
++.+|++-++.... +...+++||||++++||++||+|.||||||||.++|.|... ....+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~~---------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTDA---------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecCC---------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 46778876665431 23579999999999999999999999999999999999764 2345689999998
Q ss_pred cCC---hh----cccceEEEeccCCC--CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCC
Q 001108 933 PKK---QE----TFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003 (1156)
Q Consensus 933 ~~~---~~----~~~~~~gyv~q~~~--~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~ 1003 (1156)
++- .. .+.+.++|++|++. +.|.+||.+.+.-......... .+++.++++.++|+.++|.+-....-..
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y- 150 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSY- 150 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhC-
Confidence 642 22 12357999999974 6788999887765554432211 3455677889999999998754333333
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+.+|||||||||.||.||+.+|++||.||||++||...++.|+++|+++.+ .|.|+|++|||+.. +.+.||||.||.
T Consensus 151 -PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMY 228 (316)
T COG0444 151 -PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMY 228 (316)
T ss_pred -CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEE
Confidence 357999999999999999999999999999999999999999999999986 69999999999985 889999999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
. |++|+.|+.
T Consensus 229 a-G~iVE~g~~ 238 (316)
T COG0444 229 A-GRIVEEGPV 238 (316)
T ss_pred C-cEEEEeCCH
Confidence 5 799999985
No 398
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-35 Score=339.94 Aligned_cols=195 Identities=24% Similarity=0.360 Sum_probs=168.7
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-------CccceEEEEcCCCCCCCCCC
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 242 (1156)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|+..+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999998 99999999886431 12467999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.|+.+.. ....++.+++.+||++..+..+ +
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~ 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYP-----G 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCc-----c
Confidence 999998864200 0113567788999987776554 4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI-NIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999876533 4556668888999999999999999999
Q ss_pred EEEEcChhHHH
Q 001108 403 IVYQGPRELVL 413 (1156)
Q Consensus 403 iv~~G~~~~~~ 413 (1156)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999999874
No 399
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=3.4e-35 Score=314.62 Aligned_cols=195 Identities=27% Similarity=0.333 Sum_probs=166.3
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++ ++.+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 5677877663 2468999999999999999999999999999999999876 468999999977532
Q ss_pred --hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 937 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 937 --~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
..+++.++|++|++.+++.+|++||+.+.... . .++.++++++.+++.+..++. +..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHH
Confidence 23456799999999888899999999875311 1 234578899999998776665 3569999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
|++|||||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||++. ++.+.+++++++
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999999999999999999999999999998777999999999986 577888999876
No 400
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=333.17 Aligned_cols=217 Identities=18% Similarity=0.192 Sum_probs=171.1
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CceeEEEEcCccCCCcCc-------cceEEEEcCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEFVP-------QRTAAYISQHDN 236 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~ 236 (1156)
..+|+|||++|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 459999999999999999999999999999999999986311 128999999998765432 246999999864
Q ss_pred --CCCCCCHHHHHHHHhhhcCC-CchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 001108 237 --HIGEMTVRETLAFSARCQGV-GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1156)
Q Consensus 237 --~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1156)
+.+.+||.+++.+....... +.... . ..+....+.++|+.+||.+..+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~---~--------------------------~~~~~~~~~~~L~~~gL~~~~~ 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWWQ---R--------------------------FGWRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccccccc---c--------------------------HHHHHHHHHHHHHHCCCCChHH
Confidence 67889999999764321100 00000 0 0011234577899999975321
Q ss_pred ccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 001108 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1156)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1156)
+-+..+..|||||||||+||+||+.+|++|||||||+|||+.++.++++.|+++.. ..+.+||.++|+...+.+++|
T Consensus 151 --~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 151 --AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQ-NNNTTILLISHDLQMLSQWAD 227 (330)
T ss_pred --HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCC
Confidence 12344567999999999999999999999999999999999999999999999765 335567778999999999999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001108 394 DIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~ 413 (1156)
+|++|++|+|++.|+.+++.
T Consensus 228 ri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 228 KINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999998774
No 401
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-35 Score=318.79 Aligned_cols=204 Identities=27% Similarity=0.419 Sum_probs=171.2
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
+|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999998 9999999998765332 467999999988899999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+.++....+... .+....+.++++.+||.+..++.+ +.||
T Consensus 91 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 131 (235)
T cd03299 91 NIAYGLKKRKVDK----------------------------------KEIERKVLEIAEMLGIDHLLNRKP-----ETLS 131 (235)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHHhcCc-----ccCC
Confidence 9988653221100 001123456788899987777655 4699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1156)
|||||||+||+|++.+|++++|||||+|||+.++.++.+.|++++...+. +|+.++|+..++.+++|+|++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~-tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV-TVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999987653344 45556778888999999999999999999
Q ss_pred EcChhHHH
Q 001108 406 QGPRELVL 413 (1156)
Q Consensus 406 ~G~~~~~~ 413 (1156)
.|+++++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987764
No 402
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-35 Score=318.84 Aligned_cols=201 Identities=23% Similarity=0.400 Sum_probs=168.0
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1156)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999998 9999999998754322 357999999998999999999998
Q ss_pred HHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 001108 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1156)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1156)
++.... .... . .....++.+++.+||++..++.+. .|||||
T Consensus 94 ~~~~~~-~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 134 (232)
T PRK10771 94 LGLNPG-LKLN-----A----------------------------AQREKLHAIARQMGIEDLLARLPG-----QLSGGQ 134 (232)
T ss_pred cccccc-cCCC-----H----------------------------HHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHH
Confidence 753210 0000 0 011235678899999877776554 699999
Q ss_pred HHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcC
Q 001108 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1156)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~ 408 (1156)
||||+||++++.+|+++||||||+|||+.++..+.+.|+++.+..+ ++|+.++|+..++.+++|+|++|.+|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQ-LTLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998765334 445557888889999999999999999999999
Q ss_pred hhHHH
Q 001108 409 RELVL 413 (1156)
Q Consensus 409 ~~~~~ 413 (1156)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 88764
No 403
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=7.2e-35 Score=325.24 Aligned_cols=215 Identities=24% Similarity=0.320 Sum_probs=171.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--------ccceEEEEcCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--------PQRTAAYISQHDNH 237 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--------~~~~~~yv~Q~d~~ 237 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+...+|+|.++|.++.... .++.++|++|++.+
T Consensus 18 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (262)
T PRK09984 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNL 97 (262)
T ss_pred EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccccc
Confidence 4999999999999999999999999999999999999875223699999998864321 13569999999888
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++.+||+||+.++..... . ..... ... ...+....++.+++.+||++..|..+
T Consensus 98 ~~~~tv~e~l~~~~~~~~--~-------~~~~~--~~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~~- 150 (262)
T PRK09984 98 VNRLSVLENVLIGALGST--P-------FWRTC--FSW---------------FTREQKQRALQALTRVGMVHFAHQRV- 150 (262)
T ss_pred ccCCcHHHHHHhhhcccc--c-------chhhh--ccc---------------ccHHHHHHHHHHHHHcCCHHHHhCCc-
Confidence 999999999987642100 0 00000 000 00011234677899999987766654
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
..|||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++++.. +++||.++|+..++.+++|+|++
T Consensus 151 ----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tvii~tH~~~~~~~~~d~i~~ 225 (262)
T PRK09984 151 ----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND-GITVVVTLHQVDYALRYCERIVA 225 (262)
T ss_pred ----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 4699999999999999999999999999999999999999999999876533 45566678888889999999999
Q ss_pred EcCCeEEEEcChhHH
Q 001108 398 LSDGQIVYQGPRELV 412 (1156)
Q Consensus 398 L~~G~iv~~G~~~~~ 412 (1156)
|++|++++.|+++++
T Consensus 226 l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 226 LRQGHVFYDGSSQQF 240 (262)
T ss_pred EECCEEEEeCCHHHh
Confidence 999999999998764
No 404
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-35 Score=325.13 Aligned_cols=215 Identities=20% Similarity=0.253 Sum_probs=174.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC--C-CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 488999998874 2469999999999999999999999999999999999642 1 13689999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ..+++.++|++|++.+++. |++||+.+...... .......++.+.++++.+++.. ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87632 1345679999999988874 99999987643221 1112233455778888888752 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 4778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 6 689998874
No 405
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=327.28 Aligned_cols=215 Identities=20% Similarity=0.270 Sum_probs=174.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC--C-CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 931 (1156)
.+.++++++.++ +..+|+|+||+|++||+++|+||||||||||+++|+|... + .+..|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 588999998874 2358999999999999999999999999999999999642 1 02689999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC----cccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~~~ 1002 (1156)
.++.. ..+++.+||++|++.+++. ||+||+.|....+.. .+....++.+.++++.+++. +..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1245679999999988874 999999986543211 12223345677888888874 223332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.||++++|+
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999987 4778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |++++.|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 6 688888874
No 406
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-35 Score=327.01 Aligned_cols=218 Identities=22% Similarity=0.391 Sum_probs=175.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ +++.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 578999998873 12469999999999999999999999999999999999876 5689999999876
Q ss_pred ChhcccceEEEeccCCCCC--CCCCHHHHHHHHHHhhC-CCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 935 KQETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRL-SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~--~~~Tv~e~l~~~~~lr~-~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
.....++.++|++|++.+. ...++++++.+...... .........++.++++++.++|.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4332334699999997653 23478888865421100 001111233456788999999988777654 469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||||++||+||+.+|+||+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.||+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999986 477889999766 4 7899988
Q ss_pred CCC
Q 001108 1092 PLG 1094 (1156)
Q Consensus 1092 ~~~ 1094 (1156)
+..
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 754
No 407
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.8e-35 Score=316.16 Aligned_cols=194 Identities=31% Similarity=0.459 Sum_probs=159.9
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCC-CCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGE 240 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (1156)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 35999999999999999999999999999999999999998 999999998875432 2357999999864 4678
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1156)
+||+||+.++....+... .+....++.+++.+||++..+..+
T Consensus 91 ~t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 132 (211)
T cd03225 91 PTVEEEVAFGLENLGLPE----------------------------------EEIEERVEEALELVGLEGLRDRSP---- 132 (211)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 999999988653221100 001123566788999987666544
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++. . +++|+.++|+..++..+||+|++|++
T Consensus 133 -~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 133 -FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-E-GKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999998765 3 45566678888899999999999999
Q ss_pred Ce
Q 001108 401 GQ 402 (1156)
Q Consensus 401 G~ 402 (1156)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
No 408
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=323.19 Aligned_cols=208 Identities=22% Similarity=0.310 Sum_probs=166.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC-----CCCceeEEEEcCccCCCc-----CccceEEEEcCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP-----TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~-----~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (1156)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++| + +|+|+++|.++... ..++.++|++|++
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 109 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV---TGKITLDGEDIYDPRLDVVELRARVGMVFQKP 109 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---ceEEEECCEECcccccchHHHhhceEEEecCC
Confidence 499999999999999999999999999999999999874 5 89999999887531 1246799999998
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 001108 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1156)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1156)
.+++ .||+||+.|+....+..... .+....++.+++.+||.+.....
T Consensus 110 ~~~~-~tv~enl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 156 (267)
T PRK14235 110 NPFP-KSIYENVAYGPRIHGLARSK--------------------------------AELDEIVETSLRKAGLWEEVKDR 156 (267)
T ss_pred CCCC-CcHHHHHHHHHHhcccccch--------------------------------HHHHHHHHHHHHHcCCchhhhHH
Confidence 7777 49999999875432210000 00112356678888886422111
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
. +..++.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++.+ + .+|+.++|+..++.+++|++
T Consensus 157 ~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~-~tiiivtH~~~~~~~~~d~v 232 (267)
T PRK14235 157 L-HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--N-YTIVIVTHSMQQAARVSQRT 232 (267)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--C-CeEEEEEcCHHHHHhhCCEE
Confidence 1 233457999999999999999999999999999999999999999999998743 3 45555778888999999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001108 396 ILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1156)
++|++|+++.+|+.+++.
T Consensus 233 ~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 233 AFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988763
No 409
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=321.85 Aligned_cols=215 Identities=25% Similarity=0.264 Sum_probs=175.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.+.++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..... +..|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478899988774 246999999999999999999999999999999999974321 1479999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ...++.++|++|++.+++ .||+||+.|....+.. ......++.+.++++.+++.+ ..+..
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 146 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDS--- 146 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCc-ccHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcC---
Confidence 87642 234567999999998887 4999999987544321 122334456788888888753 22232
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~ 222 (253)
T PRK14261 147 --ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999875 689999999986 4677899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 223 ~-G~i~~~g~~ 232 (253)
T PRK14261 223 L-GKLIEFDKT 232 (253)
T ss_pred C-CEEEEcCCH
Confidence 6 688888874
No 410
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-35 Score=323.87 Aligned_cols=208 Identities=26% Similarity=0.400 Sum_probs=169.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|+..+++.+|
T Consensus 16 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (255)
T PRK11231 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGIT 92 (255)
T ss_pred EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCcc
Confidence 5999999999999999999999999999999999999988 999999998765432 2356999999988888899
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|.||+.|+..... ... ... ..+....++++++.+||++..++.+ .
T Consensus 93 v~~~i~~~~~~~~--~~~----------------~~~------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 137 (255)
T PRK11231 93 VRELVAYGRSPWL--SLW----------------GRL------------SAEDNARVNQAMEQTRINHLADRRL-----T 137 (255)
T ss_pred HHHHHHhccchhh--hhc----------------cCC------------CHHHHHHHHHHHHHcCCHHHHcCCc-----c
Confidence 9999988631000 000 000 0001123567788999987666654 4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+||+|++.+|++|||||||+|||+.+...+.+.|+++.. . +++|+.++|+..++.+++|++++|++|+
T Consensus 138 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~ 215 (255)
T PRK11231 138 DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-Q-GKTVVTVLHDLNQASRYCDHLVVLANGH 215 (255)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHhcCEEEEEECCe
Confidence 6999999999999999999999999999999999999999999998754 3 4455667888889999999999999999
Q ss_pred EEEEcChhHHH
Q 001108 403 IVYQGPRELVL 413 (1156)
Q Consensus 403 iv~~G~~~~~~ 413 (1156)
+++.|+.+++.
T Consensus 216 i~~~~~~~~~~ 226 (255)
T PRK11231 216 VMAQGTPEEVM 226 (255)
T ss_pred EEEEcCHHHhc
Confidence 99999987753
No 411
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=321.97 Aligned_cols=230 Identities=20% Similarity=0.273 Sum_probs=180.0
Q ss_pred CCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcH
Q 001108 112 IDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGK 191 (1156)
Q Consensus 112 ~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGK 191 (1156)
.+.+...++++||++.+. .+++|+|+|+++++|++++|+|||||||
T Consensus 14 ~~~~~~~l~~~nl~~~~~----------------------------------~~~il~~vsl~i~~Ge~~~I~G~nGsGK 59 (267)
T PRK14237 14 FPEEEIALSTKDLHVYYG----------------------------------KKEAIKGIDMQFEKNKITALIGPSGSGK 59 (267)
T ss_pred cCCCCeEEEEeeEEEEEC----------------------------------CeeeEeeeEEEEcCCCEEEEECCCCCCH
Confidence 344556799999998762 1249999999999999999999999999
Q ss_pred HHHHHHHhcCCCCC--CCceeEEEEcCccCCCc-----CccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhH
Q 001108 192 TTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLT 264 (1156)
Q Consensus 192 STLL~~L~G~~~~~--~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 264 (1156)
||||++|+|.++|. ...+|+|.++|.++... ..++.++||+|++.+++ .||+||+.++....+....
T Consensus 60 STLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~----- 133 (267)
T PRK14237 60 STYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDK----- 133 (267)
T ss_pred HHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCH-----
Confidence 99999999998631 01289999999987532 12457999999887776 6999999987532211000
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCcc
Q 001108 265 ELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344 (1156)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~v 344 (1156)
.+....+..+++.++|.++.++.. +..++.||||||||++|||+|+.+|++
T Consensus 134 ----------------------------~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~l 184 (267)
T PRK14237 134 ----------------------------KVLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDI 184 (267)
T ss_pred ----------------------------HHHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 001123456788888864332222 245668999999999999999999999
Q ss_pred ceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHH
Q 001108 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 345 llLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
++|||||+|||+.+...+.+.|+++. .+ ++|+.++|+..++.++||+|++|++|++++.|+++++.
T Consensus 185 llLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 185 LLMDEPASALDPISTMQLEETMFELK--KN-YTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHh--cC-CEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999873 34 45566778888999999999999999999999998763
No 412
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=324.57 Aligned_cols=219 Identities=23% Similarity=0.280 Sum_probs=177.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC---CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1156)
.+.++|++++++ ++.+|+||||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 478999998884 24699999999999999999999999999999999997642 14689999999
Q ss_pred ccCCh----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001108 932 YPKKQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1156)
Q Consensus 932 ~~~~~----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~ 1007 (1156)
.++.. ...++.++|++|++.+++ .|++||+.+...... ..+.++..+.+.++++.+++.+..+..... .+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLSD-SPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhhC-Cccc
Confidence 87532 234567999999988887 899999987643221 123334445567889999986432111111 1457
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
||||||||++|||+|+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999986 47788999999986 689
Q ss_pred EEecCC
Q 001108 1088 IYVGPL 1093 (1156)
Q Consensus 1088 ~~~g~~ 1093 (1156)
++.|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 998874
No 413
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-36 Score=330.72 Aligned_cols=253 Identities=24% Similarity=0.339 Sum_probs=197.8
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHhhcCCC-CCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCC
Q 001108 82 QRLIDKLVKVTDVDNERFLLKLKNRIDRVGID-LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPS 160 (1156)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 160 (1156)
..-+|+.++..+...+ +.++.+...+. .....|.|+|+++.+++
T Consensus 230 ltdme~mfdLl~~~~~-----v~d~pda~~L~~~~~g~v~F~~V~F~y~~------------------------------ 274 (497)
T COG5265 230 LTDMEKMFDLLDVEAE-----VSDAPDAPPLWPVRLGAVAFINVSFAYDP------------------------------ 274 (497)
T ss_pred hhhHHHHHHhhccchh-----hccCCCCccccccccceEEEEEEEeeccc------------------------------
Confidence 3344555555554444 44554444443 34567999999999864
Q ss_pred CcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCC
Q 001108 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNH 237 (1156)
Q Consensus 161 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~ 237 (1156)
.+++|+++|+++++|++++++||+|+||||++++|-++++++ +|.|+++|+++.+.. .++.||.|||+.++
T Consensus 275 ---~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~slR~aIg~VPQDtvL 348 (497)
T COG5265 275 ---RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQSLRRAIGIVPQDTVL 348 (497)
T ss_pred ---cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHHHHHHHhCcCccccee
Confidence 235999999999999999999999999999999999999998 999999999986543 35789999996555
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
| +-|+..|+.|+. +....+....+++..+. ... +..|++++||.||
T Consensus 349 F-NDti~yni~ygr----~~at~eev~aaa~~aqi---------------------------~~f--i~~lP~gy~t~Vg 394 (497)
T COG5265 349 F-NDTIAYNIKYGR----PDATAEEVGAAAEAAQI---------------------------HDF--IQSLPEGYDTGVG 394 (497)
T ss_pred h-hhhHHHHHhccC----ccccHHHHHHHHHHhhh---------------------------hHH--HHhCchhhhcccc
Confidence 5 569999999874 22222322222222111 111 3358999999999
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
+++.+ |||||||||+|||+++.+|+||+|||.||+||+.|...|...|+..+ .++|+++.. |+..+.--+|.|+|
T Consensus 395 erglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlvia--hrlsti~~adeiiv 469 (497)
T COG5265 395 ERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIA--HRLSTIIDADEIIV 469 (497)
T ss_pred hheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEe--ehhhhccCCceEEE
Confidence 99997 99999999999999999999999999999999999999999999876 345555433 45667778999999
Q ss_pred EcCCeEEEEcChhHHHH
Q 001108 398 LSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (1156)
|++|+|++.|++++++.
T Consensus 470 l~~g~i~erg~h~~ll~ 486 (497)
T COG5265 470 LDNGRIVERGTHEELLA 486 (497)
T ss_pred eeCCEEEecCcHHHHHH
Confidence 99999999999999876
No 414
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=323.93 Aligned_cols=216 Identities=19% Similarity=0.231 Sum_probs=175.1
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEE
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITI 929 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i 929 (1156)
+..+.++|+++.++ ++.+|+||||+|++||+++|+||||||||||+++|+|..... +..|+|.+
T Consensus 18 ~~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (274)
T PRK14265 18 HSVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLY 84 (274)
T ss_pred CceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEE
Confidence 34689999998874 246999999999999999999999999999999999975321 24799999
Q ss_pred cCccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----cccccc
Q 001108 930 SGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLV 1000 (1156)
Q Consensus 930 ~g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~ 1000 (1156)
+|.++.. ..+++.++|++|++.+++. ||.||+.+....+. .. ...++.+.++++.+++.. ..+..
T Consensus 85 ~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~- 158 (274)
T PRK14265 85 RDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK- 158 (274)
T ss_pred CCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC-
Confidence 9987531 2345679999999888764 99999988643321 11 122344677788888742 22322
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 001108 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080 (1156)
Q Consensus 1001 ~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~ 1080 (1156)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.||++++
T Consensus 159 ----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~ 232 (274)
T PRK14265 159 ----GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAF 232 (274)
T ss_pred ----cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999987 47889999999
Q ss_pred Ee--------cCcEEEEecCC
Q 001108 1081 MK--------RGGQEIYVGPL 1093 (1156)
Q Consensus 1081 l~--------~Gg~~~~~g~~ 1093 (1156)
|+ +.|++++.|+.
T Consensus 233 l~~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 233 FNTEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred EecccccccccCceEEEeCCH
Confidence 97 25899999985
No 415
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.4e-34 Score=318.05 Aligned_cols=205 Identities=27% Similarity=0.410 Sum_probs=170.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
++|+|+|+++.+|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|++
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 4999999999999999999999999999999999999988 9999999998765333 36799999998888899999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.+.....+... . .....++++++.+++....++.+ +.|
T Consensus 91 enl~~~~~~~~~~~--~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~l 131 (237)
T TIGR00968 91 DNIAFGLEIRKHPK--A--------------------------------KIKARVEELLELVQLEGLGDRYP-----NQL 131 (237)
T ss_pred HHHHhHHHhcCCCH--H--------------------------------HHHHHHHHHHHHcCCHhHhhCCh-----hhC
Confidence 99988654321100 0 00123466788899976666544 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
|||||||++||++|+.+|++++|||||+|||..+...+.+.|+++.. ..+.+|+.++|...++.+++|+|++|++|+++
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~ 210 (237)
T TIGR00968 132 SGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD-EVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE 210 (237)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998754 32344455677778899999999999999999
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
+.|+.+++.
T Consensus 211 ~~~~~~~~~ 219 (237)
T TIGR00968 211 QIGSPDEVY 219 (237)
T ss_pred EecCHHHHH
Confidence 999988764
No 416
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=322.48 Aligned_cols=229 Identities=18% Similarity=0.255 Sum_probs=177.6
Q ss_pred CCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHH
Q 001108 113 DLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKT 192 (1156)
Q Consensus 113 ~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKS 192 (1156)
+.|...++++|+++.+.. ..+|+|+|++|++|++++|+||||||||
T Consensus 8 ~~~~~~l~~~~l~~~~~~----------------------------------~~il~~isl~i~~Ge~~~i~G~nGsGKS 53 (260)
T PRK10744 8 ATAPSKIQVRNLNFYYGK----------------------------------FHALKNINLDIAKNQVTAFIGPSGCGKS 53 (260)
T ss_pred cCCCceEEEEEEEEEeCC----------------------------------eEEeeceeEEEcCCCEEEEECCCCCCHH
Confidence 456777899999987621 2489999999999999999999999999
Q ss_pred HHHHHHhcCCC--CCCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHH
Q 001108 193 TLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTE 265 (1156)
Q Consensus 193 TLL~~L~G~~~--~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 265 (1156)
|||++|+|.++ |....+|+|.++|.++... ..++.++|++|++.+++ .||+||+.++.........
T Consensus 54 TLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~------ 126 (260)
T PRK10744 54 TLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSR------ 126 (260)
T ss_pred HHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCH------
Confidence 99999999986 2101289999999887421 12467999999887776 8999999886532210000
Q ss_pred HHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccc
Q 001108 266 LARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALAL 345 (1156)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vl 345 (1156)
.+....++.+++.+||........ +.....|||||||||+||++|+.+|++|
T Consensus 127 ---------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~ll 178 (260)
T PRK10744 127 ---------------------------AEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQQQRLCIARGIAIRPEVL 178 (260)
T ss_pred ---------------------------HHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 001123566788888743211111 2334579999999999999999999999
Q ss_pred eeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHH
Q 001108 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 346 lLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
||||||+|||+.++..+.+.|+++. .+ ++||.++|+..++.+++|++++|++|+++..|+.+++.
T Consensus 179 lLDEPt~~LD~~~~~~l~~~L~~~~--~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 179 LLDEPCSALDPISTGRIEELITELK--QD-YTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999874 34 45666778888899999999999999999999988764
No 417
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=321.16 Aligned_cols=215 Identities=24% Similarity=0.318 Sum_probs=174.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC--C-eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g 931 (1156)
.+.++|++++++ .+.+|+|+||+|++||++||+|+||||||||+++|+|...+ . +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478899998874 24699999999999999999999999999999999997641 1 3589999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.+... ...++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87532 224567999999988776 799999987643321 1112233456788899988842 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+.+||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++. +++|||++||+++ ++.+.+|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 45799999999999999999999999999999999999999999999985 4799999999986 4778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 6 688888764
No 418
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6.3e-35 Score=355.32 Aligned_cols=211 Identities=21% Similarity=0.308 Sum_probs=180.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++ ++.+|+||||+|++|+++||+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478999998874 2469999999999999999999999999999999999875 4689999999875
Q ss_pred Chh---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
... . .++.+||++|++.+++.+||+||+.|.... ....++.+.++++.++|.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 421 1 224689999999999999999999875311 1233456889999999987777664 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
||||||+||+||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.||++++|++ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999888999999999986 47788999999986 688898
Q ss_pred cCCC
Q 001108 1091 GPLG 1094 (1156)
Q Consensus 1091 g~~~ 1094 (1156)
|+..
T Consensus 222 g~~~ 225 (510)
T PRK15439 222 GKTA 225 (510)
T ss_pred cChH
Confidence 8754
No 419
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=9.9e-35 Score=314.05 Aligned_cols=199 Identities=21% Similarity=0.348 Sum_probs=165.0
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-ccceEEEEcCCCCCCCCCCHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 357999999999999999999999999999999999998 999999999875432 2467999999998999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+.+..... .... . +....++++++.+||++..++.+ +.||
T Consensus 90 n~~~~~~~~-~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 130 (213)
T TIGR01277 90 NIGLGLHPG-LKLN-----A----------------------------EQQEKVVDAAQQVGIADYLDRLP-----EQLS 130 (213)
T ss_pred HHHhHhhcc-CCcc-----H----------------------------HHHHHHHHHHHHcCcHHHhhCCc-----ccCC
Confidence 998754211 0000 0 00123566788999987666544 4699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1156)
||||||++||++++.+|++++|||||+|||..++..+.+.|+++.. ..+++|+.++|+..++.+++|++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCS-ERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 9999999999999999999999999999999999999999998764 334555667888889999999999999999998
Q ss_pred EcC
Q 001108 406 QGP 408 (1156)
Q Consensus 406 ~G~ 408 (1156)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
No 420
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.1e-34 Score=322.71 Aligned_cols=207 Identities=29% Similarity=0.426 Sum_probs=169.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 15 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (256)
T TIGR03873 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLT 91 (256)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCCC
Confidence 4999999999999999999999999999999999999998 9999999998765432 346999999987788899
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.++..... ... . .+ ..+....++.+++.+||.+..++.+ .
T Consensus 92 v~e~l~~~~~~~~---------~~~------~-~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 136 (256)
T TIGR03873 92 VRDVVALGRIPHR---------SLW------A-GD--------------SPHDAAVVDRALARTELSHLADRDM-----S 136 (256)
T ss_pred HHHHHHhcchhhh---------hhc------c-CC--------------CHHHHHHHHHHHHHcCcHhhhcCCc-----c
Confidence 9999988531000 000 0 00 0001124567788999977666554 4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.. . +++|+.++|+..++.+++|+|++|++|+
T Consensus 137 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~ 214 (256)
T TIGR03873 137 TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-T-GVTVVAALHDLNLAASYCDHVVVLDGGR 214 (256)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 6999999999999999999999999999999999999999999998753 3 4456667888889999999999999999
Q ss_pred EEEEcChhHH
Q 001108 403 IVYQGPRELV 412 (1156)
Q Consensus 403 iv~~G~~~~~ 412 (1156)
+++.|+.+++
T Consensus 215 i~~~g~~~~~ 224 (256)
T TIGR03873 215 VVAAGPPREV 224 (256)
T ss_pred EEEecCHHHh
Confidence 9999998775
No 421
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=5.7e-35 Score=316.07 Aligned_cols=194 Identities=23% Similarity=0.385 Sum_probs=161.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHIGE 240 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~~~ 240 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.
T Consensus 14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 4999999999999999999999999999999999999988 99999999887421 124679999999888889
Q ss_pred CCHHHHHHHHhh-hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 241 MTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 241 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
+||+||+.++.. .++... .+....++.+++.+||++..++.+
T Consensus 91 ~t~~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 133 (213)
T cd03262 91 LTVLENITLAPIKVKGMSK----------------------------------AEAEERALELLEKVGLADKADAYP--- 133 (213)
T ss_pred CcHHHHHHhHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhhCc---
Confidence 999999988642 111000 001123566788899987666554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||++|+.+|+++||||||+|||+.+...+.+.|+++.. .+ ++||.++|+..++.+++|+|++|+
T Consensus 134 --~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~sh~~~~~~~~~d~i~~l~ 209 (213)
T cd03262 134 --AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EG-MTMVVVTHEMGFAREVADRVIFMD 209 (213)
T ss_pred --cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEEe
Confidence 46999999999999999999999999999999999999999999998764 34 445557888899999999999999
Q ss_pred CCeE
Q 001108 400 DGQI 403 (1156)
Q Consensus 400 ~G~i 403 (1156)
+|++
T Consensus 210 ~g~i 213 (213)
T cd03262 210 DGRI 213 (213)
T ss_pred CCcC
Confidence 9974
No 422
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-34 Score=324.13 Aligned_cols=204 Identities=23% Similarity=0.286 Sum_probs=168.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCC-CCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGA 97 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccC
Confidence 4999999999999999999999999999999999999998 999999999875432 2467999999863 67789
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||.||+.++....+.. + .+....++.+++.+||....++.+
T Consensus 98 tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 138 (277)
T PRK13642 98 TVEDDVAFGMENQGIP-R---------------------------------EEMIKRVDEALLAVNMLDFKTREP----- 138 (277)
T ss_pred CHHHHHHhhHHHcCCC-H---------------------------------HHHHHHHHHHHHHCCCHhHhhCCc-----
Confidence 9999998865322110 0 001124567788899987666544
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
..|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++....+.| |+.++|+..++. .+|+|++|++|
T Consensus 139 ~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~t-iil~sH~~~~~~-~~d~i~~l~~G 216 (277)
T PRK13642 139 ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLT-VLSITHDLDEAA-SSDRILVMKAG 216 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHH-hCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999876532444 555777878875 69999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
+++..|+++++.
T Consensus 217 ~i~~~g~~~~~~ 228 (277)
T PRK13642 217 EIIKEAAPSELF 228 (277)
T ss_pred EEEEeCCHHHHh
Confidence 999999998875
No 423
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=325.37 Aligned_cols=213 Identities=23% Similarity=0.282 Sum_probs=173.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC---CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1156)
.++++++++.+. ++.+|+|+||+|++||++||+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 588999998874 24699999999999999999999999999999999997542 13589999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ...++.++|++|++.+++. ||+||+.+....+. ... ..++.++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87532 2345679999999888775 99999988654432 111 23456888999998853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE-E
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL-M 1081 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~-l 1081 (1156)
+..||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.+|++++ |
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 457999999999999999999999999999999999999999999999976 489999999986 46778999764 5
Q ss_pred ecCcEEEEecCC
Q 001108 1082 KRGGQEIYVGPL 1093 (1156)
Q Consensus 1082 ~~Gg~~~~~g~~ 1093 (1156)
+ .|+++..|+.
T Consensus 254 ~-~G~i~~~g~~ 264 (285)
T PRK14254 254 T-GGELVEFDDT 264 (285)
T ss_pred e-CCEEEEeCCH
Confidence 6 4788888874
No 424
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=4.8e-35 Score=316.61 Aligned_cols=200 Identities=28% Similarity=0.440 Sum_probs=160.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCC--CCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHI--GEMT 242 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lT 242 (1156)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++. ..++.++|++|++.+. +.+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHH--HHHhheEEeccccccccCCCCc
Confidence 35999999999999999999999999999999999999998 999999998764 2356799999987653 3489
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.++...... ...... .+....++.+++.+||++..++.+ .
T Consensus 87 v~e~l~~~~~~~~~--~~~~~~----------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 131 (213)
T cd03235 87 VRDVVLMGLYGHKG--LFRRLS----------------------------KADKAKVDEALERVGLSELADRQI-----G 131 (213)
T ss_pred HHHHHHhccccccc--cccCCC----------------------------HHHHHHHHHHHHHcCCHHHHhCCc-----c
Confidence 99999886421100 000000 001124567888999987666554 4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ . +++||.++|+..++.+++|+|++|++|
T Consensus 132 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-E-GMTILVVTHDLGLVLEYFDRVLLLNRT- 208 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEcCc-
Confidence 6999999999999999999999999999999999999999999998764 3 445666788888999999999999886
Q ss_pred EEEEc
Q 001108 403 IVYQG 407 (1156)
Q Consensus 403 iv~~G 407 (1156)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66654
No 425
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-34 Score=319.73 Aligned_cols=215 Identities=24% Similarity=0.315 Sum_probs=173.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC--CC-eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 931 (1156)
.+.++|+++.++ ++.+|+|+||+|++||++||+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478899988774 2469999999999999999999999999999999999743 11 2479999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ...++.+||++|++.+++ .|++||+.+....+.. ...+..++.+.+.++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87531 234567999999988887 6999999886543321 112222345677888887642 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|+
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 589999999987 4778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14255 222 T-GNLIEFADT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 688888764
No 426
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=7.8e-35 Score=318.59 Aligned_cols=207 Identities=24% Similarity=0.307 Sum_probs=167.1
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC----CCCceeEEEEcCccCCCcCc-cceEEEEcCCCC--CCC
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP----TLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN--HIG 239 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~----~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~--~~~ 239 (1156)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999988 6 9999999998765433 257999999874 556
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+|+.|++.+.....+... .+....++.+++.+||++.. ...+.
T Consensus 78 ~~t~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~--~~~~~ 121 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLS----------------------------------KQARALILEALEAVGLPDPE--EVLKK 121 (230)
T ss_pred ccCHHHHHHHHHHHcCccH----------------------------------HHHHHHHHHHHHHcCCCchH--HHHhC
Confidence 7899999987643221100 00112456788999997420 11123
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.+..|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++... .+++|+.++|+..++..++|+|++|+
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~ 200 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL-FGTGILLITHDLGVVARIADEVAVMD 200 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 34569999999999999999999999999999999999999999999987653 34455567788889999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|+++..|+++++.
T Consensus 201 ~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 201 DGRIVERGTVKEIF 214 (230)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988764
No 427
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=9.4e-35 Score=353.87 Aligned_cols=219 Identities=22% Similarity=0.342 Sum_probs=180.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+||||+|++|+++||+||||||||||+++|+|...+++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 56788888773 24699999999999999999999999999999999998653235899999998764
Q ss_pred hh----cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCC-CCChHHHHHHHHHHHHHcCCCccc-ccccCCCCCCCCC
Q 001108 936 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~-~~~~~~~~~~~LS 1009 (1156)
.. ..++.+||++|++.+++.+||+||+.+....+... ....+..++.++++++.+++.+.. +.. +..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 31 12356999999998889999999998864332111 122334456788999999997654 333 34799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||||+||+||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999888999999999986 47788999999986 68888
Q ss_pred ecCCC
Q 001108 1090 VGPLG 1094 (1156)
Q Consensus 1090 ~g~~~ 1094 (1156)
.|+..
T Consensus 222 ~~~~~ 226 (500)
T TIGR02633 222 TKDMS 226 (500)
T ss_pred ecCcc
Confidence 88764
No 428
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.4e-34 Score=323.39 Aligned_cols=207 Identities=22% Similarity=0.259 Sum_probs=169.1
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCC--CCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN--HIG 239 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~--~~~ 239 (1156)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 45999999999999999999999999999999999999998 9999999988753221 246999999864 567
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-ccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGD 318 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 318 (1156)
.+||.+++.+..+....... .+....++.+++.+||. ...++.+
T Consensus 103 ~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 147 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLEP---------------------------------EQREKQIIETLRQVGLLPDHASYYP-- 147 (267)
T ss_pred chhHHHHHHHHHHhccCCCH---------------------------------HHHHHHHHHHHHHcCCChHHHhcCc--
Confidence 88999999886543210000 00112356788999994 5555443
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++.+.. +++||.++|+..++..+||++++|
T Consensus 148 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 148 ---HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQ-GISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred ---hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHhcCEEEEE
Confidence 4699999999999999999999999999999999999999999999876533 445556788888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+++++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
No 429
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=7e-35 Score=317.80 Aligned_cols=207 Identities=23% Similarity=0.353 Sum_probs=169.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 478999998773 2469999999999999999999999999999999999865 5689999999765
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSg 1010 (1156)
.. ..+++.++|++|++.+++ .|++||+.+....+.. . ..++.++++++.+++. ...+.. +..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 32 224567899999988876 5999999886443321 1 1234567899999995 345544 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|.|||+++|+++. + +.||++++|++.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHh
Confidence 999999999999999999999999999999999999999999875 48999999999863 4 57999999964443333
No 430
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=8.8e-35 Score=336.99 Aligned_cols=199 Identities=25% Similarity=0.413 Sum_probs=169.4
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-------CccceEEEEcCCCCCCCCCC
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 242 (1156)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 899999999999999999999999999999999998 99999999887432 12467999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.|+.+... . . +....++++++.+||++..+..+ .
T Consensus 92 v~enl~~~~~~~~--~-----~-----------------------------~~~~~~~~~l~~~gL~~~~~~~~-----~ 130 (354)
T TIGR02142 92 VRGNLRYGMKRAR--P-----S-----------------------------ERRISFERVIELLGIGHLLGRLP-----G 130 (354)
T ss_pred HHHHHHHHhhccC--h-----h-----------------------------HHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999998753210 0 0 01123567889999987777554 4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+.. +++|+.++|+..++..++|+|++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-GIPILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999876533 4455667888899999999999999999
Q ss_pred EEEEcChhHHH
Q 001108 403 IVYQGPRELVL 413 (1156)
Q Consensus 403 iv~~G~~~~~~ 413 (1156)
+++.|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999998774
No 431
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-34 Score=319.49 Aligned_cols=209 Identities=19% Similarity=0.275 Sum_probs=165.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC---CCCCCCceeEEEEcCccCCCcC-----ccceEEEEcCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK---LDPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNH 237 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~---~~~~~~~~G~V~~nG~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|. +++. ..+|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 17 HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 499999999999999999999999999999999997 3331 12899999999875421 23579999999877
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++ .||+||+.++.+..+.... + .....++++++.+||.+...+..
T Consensus 96 ~~-~tv~~nl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~- 140 (250)
T PRK14245 96 FP-KSIFENVAYGLRVNGVKDN-A--------------------------------FIRQRVEETLKGAALWDEVKDKL- 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH-H--------------------------------HHHHHHHHHHHHcCCCcchhhhh-
Confidence 76 6999999887543211000 0 01123566788888864322222
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
+..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. .+ ++||.++|+..++.+.||+|++
T Consensus 141 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~d~v~~ 217 (250)
T PRK14245 141 KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK--KD-YTIVIVTHNMQQAARVSDKTAF 217 (250)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHhhCCEEEE
Confidence 23455799999999999999999999999999999999999999999999873 34 4555578888899999999999
Q ss_pred EcCCeEEEEcChhHHH
Q 001108 398 LSDGQIVYQGPRELVL 413 (1156)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1156)
|++|++++.|+++++.
T Consensus 218 l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 218 FYMGEMVEYDDTKKIF 233 (250)
T ss_pred EECCEEEEECCHHHHh
Confidence 9999999999998874
No 432
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.6e-35 Score=370.73 Aligned_cols=257 Identities=24% Similarity=0.393 Sum_probs=196.3
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++.+..++|+.++++.+++. .. .+....+.....++|+||++.+..
T Consensus 421 ~~~~~~~~~ri~~~l~~~~e~-----~~-~~~~~~~~~~~~i~~~~vsf~y~~--------------------------- 467 (694)
T TIGR01846 421 FQQTGIALERLGDILNSPTEP-----RS-AGLAALPELRGAITFENIRFRYAP--------------------------- 467 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCc-----cC-CCCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 567888899998888776551 00 011111222457999999999742
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
..+.+|+|+|++++||+.++|+|+||||||||+++|+|.++|+ +|+|++||+++++... ++.++||+|+
T Consensus 468 -----~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~ 539 (694)
T TIGR01846 468 -----DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQE 539 (694)
T ss_pred -----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccC
Confidence 1124899999999999999999999999999999999999998 9999999999877654 4789999997
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+| +.|++|||.++.. ....+.+.++++.. + .++.+ -.|+.+.||
T Consensus 540 ~~lf-~~ti~eNi~~~~~----~~~~~~i~~a~~~~---~------------------------l~~~i--~~lp~gl~t 585 (694)
T TIGR01846 540 NVLF-SRSIRDNIALCNP----GAPFEHVIHAAKLA---G------------------------AHDFI--SELPQGYNT 585 (694)
T ss_pred Ceeh-hhhHHHHHhcCCC----CCCHHHHHHHHHHc---C------------------------hHHHH--HhCcCccCc
Confidence 6555 5799999987531 11122222222111 0 11122 246778899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ .+||||||||++|||||+.+|++++||||||+||+.++..+.+.|++.. .+.|+|+ ++|.. +....||+
T Consensus 586 ~i~~~g-~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~~-~~~~~~d~ 660 (694)
T TIGR01846 586 EVGEKG-ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVII-IAHRL-STVRACDR 660 (694)
T ss_pred EecCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEE-EeCCh-HHHHhCCE
Confidence 999865 5799999999999999999999999999999999999999999998863 3455555 55554 45567999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++++|+++++++
T Consensus 661 ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 661 IIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred EEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999998865
No 433
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-34 Score=320.96 Aligned_cols=211 Identities=22% Similarity=0.336 Sum_probs=166.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|.. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 48999999999999999999999999999999999986410 1289999999886421 1245799999998889
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||+||+.++....+.... ......++.+++.+||........ +
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRNK---------------------------------KDLDELVEKSLRGANLWNEVKDRL-D 143 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhHh-h
Confidence 999999999887543211000 001123566778888742111111 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..+..|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++ + ++||.++|+..++.+++|+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tviivsH~~~~~~~~~d~i~~l 220 (258)
T PRK14241 144 KPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--D-YTIVIVTHNMQQAARVSDQTAFF 220 (258)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHHHHhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999998742 3 45556788888999999999999
Q ss_pred c------CCeEEEEcChhHHH
Q 001108 399 S------DGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~------~G~iv~~G~~~~~~ 413 (1156)
+ +|++++.|+++++.
T Consensus 221 ~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 221 NLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred ecccCCCCceEEecCCHHHHH
Confidence 7 79999999988764
No 434
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.8e-34 Score=322.55 Aligned_cols=224 Identities=25% Similarity=0.330 Sum_probs=178.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++... ..+. ..++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~---~~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSGK-HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---cccc-cCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 67889988774100 0000 013569999999999999999999999999999999999865 56899999998754
Q ss_pred h------hcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001108 936 Q------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1156)
Q Consensus 936 ~------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~ 1006 (1156)
. ...++.++|++|++ .+.+..|+.|++.+..... ...........++++++.+++. ...+.. +.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 2 12356799999997 3567789999987653211 1123334455788999999996 455554 35
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
.||+|||||++||+||+.+|+||||||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.||++++|++ |
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-G 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998765 899999999986 47778999999985 6
Q ss_pred EEEEecCCC
Q 001108 1086 QEIYVGPLG 1094 (1156)
Q Consensus 1086 ~~~~~g~~~ 1094 (1156)
++++.|+..
T Consensus 229 ~i~~~g~~~ 237 (268)
T PRK10419 229 QIVETQPVG 237 (268)
T ss_pred EEeeeCChh
Confidence 899998753
No 435
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.4e-35 Score=361.53 Aligned_cols=256 Identities=21% Similarity=0.298 Sum_probs=192.6
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.+......+|+.++++.+++. .. .....+....+++|+|+++.+..
T Consensus 280 ~~~~~~a~~ri~~ll~~~~~~-----~~--~~~~~~~~~~~I~~~~v~~~y~~--------------------------- 325 (569)
T PRK10789 280 VERGSAAYSRIRAMLAEAPVV-----KD--GSEPVPEGRGELDVNIRQFTYPQ--------------------------- 325 (569)
T ss_pred HHHHHHHHHHHHHHHcCCCcc-----cC--CCCCCCCCCCcEEEEEEEEECCC---------------------------
Confidence 456677788888777655431 00 00011112346999999998732
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
.+..+|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|+
T Consensus 326 -----~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 397 (569)
T PRK10789 326 -----TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQT 397 (569)
T ss_pred -----CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccC
Confidence 1124899999999999999999999999999999999999998 9999999998876543 4679999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+|. .|++|||.++.. ....+.+.++.+. .++ +. ....|+++.||
T Consensus 398 ~~lf~-~ti~~Ni~~~~~----~~~~~~~~~~~~~---~~l------------------------~~--~i~~lp~gl~t 443 (569)
T PRK10789 398 PFLFS-DTVANNIALGRP----DATQQEIEHVARL---ASV------------------------HD--DILRLPQGYDT 443 (569)
T ss_pred Ceecc-ccHHHHHhcCCC----CCCHHHHHHHHHH---cCC------------------------HH--HHHhCcCcccc
Confidence 76665 699999987631 1111111111111 000 00 12357788899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ ..||||||||++|||+++.+|++++|||||++||+.++..+.+.|+++. .++|+|++. |.. +....+|+
T Consensus 444 ~~~~~g-~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~it-H~~-~~~~~~d~ 518 (569)
T PRK10789 444 EVGERG-VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISA-HRL-SALTEASE 518 (569)
T ss_pred eecCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEe-cch-hHHHcCCE
Confidence 999864 4699999999999999999999999999999999999999999998753 456666644 443 45677999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++.+|+++++++
T Consensus 519 i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 519 ILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred EEEEeCCEEEEecCHHHHHH
Confidence 99999999999999998864
No 436
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-35 Score=353.45 Aligned_cols=216 Identities=27% Similarity=0.337 Sum_probs=180.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+||||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 478899988874 2469999999999999999999999999999999999875 4689999999875
Q ss_pred Ch----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ..+++.+||++|++.+++.+||+||+.+.............+.++.+.++++.++|.+..+.. +.+|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCH
Confidence 32 123567999999998899999999998853211111122334456788999999998766655 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
|||||++||++|+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999878999999999987 47788999999986 577766
Q ss_pred cC
Q 001108 1091 GP 1092 (1156)
Q Consensus 1091 g~ 1092 (1156)
++
T Consensus 222 ~~ 223 (501)
T PRK11288 222 FD 223 (501)
T ss_pred cC
Confidence 54
No 437
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-34 Score=318.60 Aligned_cols=210 Identities=20% Similarity=0.325 Sum_probs=165.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCcC-----ccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~nG~~~~~~~-----~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|..+|. ...+|+|.++|.++.... .++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14270 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPF 97 (251)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcC
Confidence 4899999999999999999999999999999999998751 013899999999875321 245799999998777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+ +||+||+.|.....+.... + +....++.+++.+||........ +
T Consensus 98 ~-~tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 142 (251)
T PRK14270 98 P-MSIYDNVAYGPRIHGIKDK-K--------------------------------ELDKIVEWALKKAALWDEVKDDL-K 142 (251)
T ss_pred C-CcHHHHHHhHHHhcCCCcH-H--------------------------------HHHHHHHHHHHHcCCchhhhhHh-h
Confidence 6 8999999987543221000 0 01123455677887742111111 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
...+.|||||||||+||++++.+|++++|||||+|||+.++.++.+.|+++.. + .+|+.++|+..++.+.||+|++|
T Consensus 143 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d~v~~l 219 (251)
T PRK14270 143 KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNMQQASRVSDYTAFF 219 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCHHHHHHhcCEEEEE
Confidence 34557999999999999999999999999999999999999999999998753 3 44555778888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+.+++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 220 LMGDLIEFNKTEKIF 234 (251)
T ss_pred ECCeEEEeCCHHHHh
Confidence 999999999998864
No 438
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=8.5e-35 Score=318.11 Aligned_cols=202 Identities=27% Similarity=0.325 Sum_probs=165.9
Q ss_pred eeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHH
Q 001108 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETL 247 (1156)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1156)
|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999999998 9999999998765332 358999999889999999999
Q ss_pred HHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChh
Q 001108 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327 (1156)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (1156)
.++......+.. ..+....++.+++.+||++..++.+ ..||||
T Consensus 76 ~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPDLS--------------------------------KSERRAIVEEHIALVGLTEAADKRP-----GQLSGG 118 (230)
T ss_pred HHHHHhcccCCC--------------------------------HHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHH
Confidence 886321000000 0001123567888999987766655 469999
Q ss_pred HHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEc
Q 001108 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1156)
Q Consensus 328 qrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G 407 (1156)
|||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++.. +.+|+.++|+..++.+++|+|++|++|++++.|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH-RVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 9999999999999999999999999999999999999999876533 445566788888999999999999999999998
Q ss_pred ChhHH
Q 001108 408 PRELV 412 (1156)
Q Consensus 408 ~~~~~ 412 (1156)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 66543
No 439
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.2e-33 Score=354.58 Aligned_cols=213 Identities=27% Similarity=0.409 Sum_probs=177.4
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1156)
+..++++||+|+|+. +++.+|+|+|++|+||+++||+|+||||||||+++|+|... +.+|+|.+||.
T Consensus 453 ~~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~ 519 (694)
T TIGR01846 453 RGAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGV 519 (694)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCE
Confidence 357999999999852 22458999999999999999999999999999999999876 56899999999
Q ss_pred cCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCC
Q 001108 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGL 1002 (1156)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~ 1002 (1156)
++++ ..+++.+|||+|++.+++ .|++||+.++. ++.+ ++.+.++++..++.+.. |+.++.
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~ 589 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGE 589 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCC----HHHHHHHHHHcChHHHHHhCcCccCcEecC
Confidence 8654 456778999999988876 69999998641 2222 23466777777765542 444554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
. ..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +|+|+|++||+++ ..+.||++++|+
T Consensus 590 ~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~ 665 (694)
T TIGR01846 590 K-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE 665 (694)
T ss_pred C-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe
Confidence 3 46899999999999999999999999999999999999999999999884 5899999999986 456799999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |++++.|+.
T Consensus 666 ~-G~i~~~g~~ 675 (694)
T TIGR01846 666 K-GQIAESGRH 675 (694)
T ss_pred C-CEEEEeCCH
Confidence 6 799999874
No 440
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3e-35 Score=365.56 Aligned_cols=210 Identities=24% Similarity=0.401 Sum_probs=175.8
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++|+||++.++ +++.+|+|+|++|+||+++||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 4699999987553 1246899999999999999999999999999999999976 3 48999999988
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-------cccccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~ 1003 (1156)
+.+ ..+++.++||+|++.++. -|++|||.++. ++.+ ++.++++++..++.+. .|+.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~----~eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDAS----DEQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCC----HHHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 653 456788999999998876 59999998852 2233 2456777777776653 35556655
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
| ..||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +++|+|++||+++ ..+.+|++++|++
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 3 5799999999999999999999999999999999999999999999885 5899999999985 5678999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 559 -G~i~e~G~~ 567 (588)
T PRK11174 559 -GQIVQQGDY 567 (588)
T ss_pred -CeEeecCCH
Confidence 689988873
No 441
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-34 Score=318.30 Aligned_cols=211 Identities=21% Similarity=0.307 Sum_probs=167.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|++|++|++++|+|||||||||||++|+|.++ |+...+|+|.++|.++... ..++.++|++|+..++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14256 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF 97 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCC
Confidence 49999999999999999999999999999999999986 3111289999999887432 1246799999998889
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||+||+.++.+..+.... + +....++.+++.+|+........ +
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14256 98 PAMSIYDNVIAGYKLNGRVNR-S--------------------------------EADEIVESSLKRVALWDEVKDRL-K 143 (252)
T ss_pred CcCcHHHHHHhHHHhcCCCCH-H--------------------------------HHHHHHHHHHHHcCCchhhhHHh-h
Confidence 999999999876532210000 0 01123566778888754211111 1
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..+..|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++.. + ++||.++|+..++.++||++++|
T Consensus 144 ~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~l 220 (252)
T PRK14256 144 SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSDYTAFF 220 (252)
T ss_pred CCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCCEEEEE
Confidence 23557999999999999999999999999999999999999999999998753 3 45566778888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|+++..|+++++.
T Consensus 221 ~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 221 YMGDLVECGETKKIF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
No 442
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=3.3e-35 Score=323.21 Aligned_cols=210 Identities=25% Similarity=0.395 Sum_probs=162.5
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++. +++.+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehH
Confidence 357788877641 12458999999999999999999999999999999999875 46899999998753
Q ss_pred h---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHH-----HHHHHHHHc--CCCcccccccCCCCC
Q 001108 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM-----FIDEVMELV--ELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~-----~v~~~l~~l--~l~~~~~~~~~~~~~ 1005 (1156)
. ..+++.+||++|++.+++ .||.||+.+... ........+ ..++.++.+ ++....+.. +
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~ 136 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----G 136 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----C
Confidence 2 234567999999987764 699999987421 111111100 112233333 233222222 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++. + +.||++++|++ |
T Consensus 137 ~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~-~-~~~d~v~~l~~-G 212 (237)
T cd03252 137 AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLST-V-KNADRIIVMEK-G 212 (237)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-C
Confidence 6799999999999999999999999999999999999999999999986 48999999999863 4 57999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 213 ~i~~~~~~ 220 (237)
T cd03252 213 RIVEQGSH 220 (237)
T ss_pred EEEEEcCH
Confidence 88888874
No 443
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.7e-34 Score=319.88 Aligned_cols=206 Identities=25% Similarity=0.382 Sum_probs=167.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCcc-----CCCcCc-------cceEEEEcC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD-----MDEFVP-------QRTAAYISQ 233 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~-----~~~~~~-------~~~~~yv~Q 233 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++|
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q 96 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEee
Confidence 4999999999999999999999999999999999999998 9999999987 554322 246999999
Q ss_pred CC--CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-
Q 001108 234 HD--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV- 310 (1156)
Q Consensus 234 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~- 310 (1156)
++ .+++.+|+.||+.+.....+... . .+....++++++.+|+..
T Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-~--------------------------------~~~~~~~~~~l~~~~l~~~ 143 (258)
T PRK11701 97 HPRDGLRMQVSAGGNIGERLMAVGARH-Y--------------------------------GDIRATAGDWLERVEIDAA 143 (258)
T ss_pred CcccccCccccHHHHHHHHHHHhccCc-H--------------------------------HHHHHHHHHHHHHcCCChh
Confidence 86 35777899999976432111000 0 001123567788999963
Q ss_pred cccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 001108 311 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (1156)
Q Consensus 311 ~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1156)
..++. +..|||||||||+|||||+.+|++|||||||+|||+.+...+.+.|+++.. ..+.+||.++|+..++.+
T Consensus 144 ~~~~~-----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~isH~~~~~~~ 217 (258)
T PRK11701 144 RIDDL-----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVR-ELGLAVVIVTHDLAVARL 217 (258)
T ss_pred HHhCC-----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHHH
Confidence 44443 346999999999999999999999999999999999999999999998765 334566668888899999
Q ss_pred hcCeEEEEcCCeEEEEcChhHHH
Q 001108 391 LFDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 391 ~~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
.+|+|++|++|++++.|+++++.
T Consensus 218 ~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 218 LAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred hcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999988763
No 444
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=4.9e-35 Score=362.88 Aligned_cols=257 Identities=23% Similarity=0.366 Sum_probs=194.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++.+...+|+.++++.+++. .. .....+.....++++||++.++.
T Consensus 297 ~~~~~~~~~ri~~~l~~~~~~-----~~--~~~~~~~~~~~i~~~~v~f~y~~--------------------------- 342 (571)
T TIGR02203 297 MQRGLAAAESLFTLLDSPPEK-----DT--GTRAIERARGDVEFRNVTFRYPG--------------------------- 342 (571)
T ss_pred HHHHHHHHHHHHHHHcCCCCC-----CC--CCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 567788888888877655441 00 00011112346999999999742
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
....+|+|+|+++++|+.++|+|+||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|+
T Consensus 343 -----~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~ 414 (571)
T TIGR02203 343 -----RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQD 414 (571)
T ss_pred -----CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccC
Confidence 1124899999999999999999999999999999999999998 9999999998876543 4679999997
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+. +++.|++|||.++..- ....+.+.++++. .+ .++.+ -.|++..||
T Consensus 415 ~~-lf~~Ti~~Ni~~~~~~---~~~~~~i~~~l~~---~~------------------------l~~~i--~~lp~gldt 461 (571)
T TIGR02203 415 VV-LFNDTIANNIAYGRTE---QADRAEIERALAA---AY------------------------AQDFV--DKLPLGLDT 461 (571)
T ss_pred cc-cccccHHHHHhcCCCC---CCCHHHHHHHHHH---cC------------------------hHHHH--HhCcCcccc
Confidence 75 5567999999876310 0111112221111 00 11111 236778899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.||+.+ +.||||||||++|||+++.+|+|++||||||+||+.++..|.+.|++.. .++|+|+. +|+ +...+.||+
T Consensus 462 ~i~~~g-~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIii-tH~-~~~~~~~D~ 536 (571)
T TIGR02203 462 PIGENG-VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVI-AHR-LSTIEKADR 536 (571)
T ss_pred eecCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEE-ehh-hHHHHhCCE
Confidence 999874 4799999999999999999999999999999999999999999998753 34565554 444 366789999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++..|+++++++
T Consensus 537 ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 537 IVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred EEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999998864
No 445
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=8.4e-35 Score=361.16 Aligned_cols=207 Identities=24% Similarity=0.394 Sum_probs=165.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+| +.|
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~T 424 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLF-NRS 424 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCcccc-ccc
Confidence 3899999999999999999999999999999999999998 9999999999877653 46899999987655 579
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
++|||.++.. ....+.+.++.+.. -.+..++ .|++..||.+|+.+ +
T Consensus 425 i~~Ni~~~~~----~~~d~~i~~al~~~---------------------------~l~~~i~--~lp~gldt~i~~~g-~ 470 (588)
T PRK13657 425 IEDNIRVGRP----DATDEEMRAAAERA---------------------------QAHDFIE--RKPDGYDTVVGERG-R 470 (588)
T ss_pred HHHHHhcCCC----CCCHHHHHHHHHHh---------------------------CHHHHHH--hCcccccchhcCCC-C
Confidence 9999988631 11111122211110 0111122 36778899999864 4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.||||||||++|||+|+++|+|++||||||+||+.++..|.+.|++.. .++|+|+ ++|.. +..+.+|+|++|++|+
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIi-itHr~-~~~~~~D~ii~l~~G~ 546 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFI-IAHRL-STVRNADRILVFDNGR 546 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEE-EEecH-HHHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999998753 3456555 44443 5678899999999999
Q ss_pred EEEEcChhHHHH
Q 001108 403 IVYQGPRELVLE 414 (1156)
Q Consensus 403 iv~~G~~~~~~~ 414 (1156)
++..|+++++++
T Consensus 547 i~~~g~~~~l~~ 558 (588)
T PRK13657 547 VVESGSFDELVA 558 (588)
T ss_pred EEEeCCHHHHHH
Confidence 999999998864
No 446
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-34 Score=322.54 Aligned_cols=215 Identities=21% Similarity=0.216 Sum_probs=173.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC--C-CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||++||+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 589999998874 2358999999999999999999999999999999999753 1 13689999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC----cccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~~~ 1002 (1156)
.++.. ..+++.++|++|++.+++ .|++||+.+....+. ....+..++.+.++++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87631 234567999999988877 599999998654321 111222344567777777542 222322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++|||+|+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.||++++|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999986 4778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |++++.|+.
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 6 688888874
No 447
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-34 Score=321.53 Aligned_cols=218 Identities=19% Similarity=0.240 Sum_probs=173.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC--C-eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g 931 (1156)
.+.++|++++++ +..+|+|+||+|++||++||+|+||||||||+++|+|.... . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478999998874 24689999999999999999999999999999999997431 1 2579999999
Q ss_pred ccCC-----hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 932 YPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 932 ~~~~-----~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
.++. ....++.++|++|++.+++ .|++||+.+....+. .. ...++.+.++++.+++.+..+..... .+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQ-SGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcC-Ccc
Confidence 8652 1234567999999988877 599999988654321 11 12334566778888774311111111 145
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec---
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR--- 1083 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~--- 1083 (1156)
.||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.||++++|++
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999875 589999999987 58899999999982
Q ss_pred -----CcEEEEecCC
Q 001108 1084 -----GGQEIYVGPL 1093 (1156)
Q Consensus 1084 -----Gg~~~~~g~~ 1093 (1156)
.|++++.|+.
T Consensus 229 ~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 229 EGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccCceEEEeCCH
Confidence 4799999874
No 448
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=3.7e-34 Score=317.99 Aligned_cols=202 Identities=23% Similarity=0.273 Sum_probs=165.4
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC----CCCceeEEEEcCccCCCcCc-cceEEEEcCCCC--CCC
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP----TLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN--HIG 239 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~----~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~--~~~ 239 (1156)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|.++..... ++.++||+|++. +.+
T Consensus 18 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~---~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~ 94 (254)
T PRK10418 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT---AGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP 94 (254)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCc---CCEEEECCeeccccccccceEEEEecCCccccCc
Confidence 89999999999999999999999999999999999988 6 9999999998754322 257999999864 446
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc---cccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV---CADTMV 316 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~dt~v 316 (1156)
..|+.+++.+.+...+... ....+..+++.+||.+ ..++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-- 136 (254)
T PRK10418 95 LHTMHTHARETCLALGKPA------------------------------------DDATLTAALEAVGLENAARVLKL-- 136 (254)
T ss_pred cccHHHHHHHHHHHcCCCh------------------------------------HHHHHHHHHHHcCCCChhhhhhc--
Confidence 6899999876543221100 0023466788899875 2333
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
....|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++. .+++|+.++|+..++.+.+|+++
T Consensus 137 ---~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~til~~sH~~~~~~~~~d~v~ 212 (254)
T PRK10418 137 ---YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK-RALGMLLVTHDMGVVARLADDVA 212 (254)
T ss_pred ---CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhCCEEE
Confidence 34579999999999999999999999999999999999999999999987653 34556667888888999999999
Q ss_pred EEcCCeEEEEcChhHHH
Q 001108 397 LLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1156)
+|++|++++.|+.+++.
T Consensus 213 ~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 213 VMSHGRIVEQGDVETLF 229 (254)
T ss_pred EEECCEEEEecCHHHHh
Confidence 99999999999988764
No 449
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-34 Score=302.68 Aligned_cols=168 Identities=27% Similarity=0.417 Sum_probs=149.0
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++ ...+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEccc
Confidence 5678877763 2358999999999999999999999999999999999865 468999999987543
Q ss_pred --hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 937 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 937 --~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
..+++.++|++|++.+++.+|+.||+. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567999999998888899999863 8999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|+++ ++.+.+|++++|++|
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999877999999999986 477789999999875
No 450
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-34 Score=319.59 Aligned_cols=210 Identities=20% Similarity=0.315 Sum_probs=164.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|++|++|++++|+|||||||||||++|+|.++ |+...+|+|+++|.++... ..++.++|++|++.++
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 48999999999999999999999999999999999986 3212389999999987431 1245799999998777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+. ||+||+.|+....+..... +....++.+++.+|+.+...... +
T Consensus 106 ~~-tv~enl~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~l~~~~~~~l-~ 150 (259)
T PRK14274 106 PQ-SIFDNVAYGPRIHGTKNKK---------------------------------KLQEIVEKSLKDVALWDEVKDRL-H 150 (259)
T ss_pred cc-CHHHHHHhHHHhcCCCCHH---------------------------------HHHHHHHHHHHHcCCchhhhhhh-h
Confidence 75 9999998865332110000 01123455677788753211111 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
...+.|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++. .+ .+||.++|+..++.+++|+|++|
T Consensus 151 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 151 TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK--EK-YTIVIVTHNMQQAARVSDQTAFF 227 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--cC-CEEEEEEcCHHHHHHhCCEEEEE
Confidence 3455799999999999999999999999999999999999999999999874 24 45555777888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|+++.+|+++++.
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999998764
No 451
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=7.6e-35 Score=309.26 Aligned_cols=179 Identities=26% Similarity=0.332 Sum_probs=150.7
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-----hcccceEEEeccCCC-CC
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-----ETFARISGYCEQNDI-HS 953 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~q~~~-~~ 953 (1156)
++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|++. ..
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3469999999999999999999999999999999999876 468999999987531 123567999999973 23
Q ss_pred CCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001108 954 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1033 (1156)
Q Consensus 954 ~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDE 1033 (1156)
...||+||+.+..... ..+.++..+.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999999865432 1233344556889999999988777653 5699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001108 1034 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068 (1156)
Q Consensus 1034 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1068 (1156)
||+|||+.++..+++.|+++.++|+|||++||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999975
No 452
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7.4e-35 Score=324.90 Aligned_cols=210 Identities=19% Similarity=0.275 Sum_probs=173.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. +...+|+||||+|++||++||+|+||||||||+++|+|... .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 4789999988842 12358999999999999999999999999999999999864 369999999876
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCC------CCC
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL------PGV 1005 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~------~~~ 1005 (1156)
.. ...++.++||+|++.+++ .|++||+.+... .. ++.++++++.++|.+..+..++. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~~------~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYGK------WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhccC------CC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 345567999999999887 599999963211 11 23567888999998766654331 123
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||+|||||++|||||+.+|+||+|||||+|||+.+...+++.|+++. +++|||+++|+++ .+ ..||++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-C
Confidence 5699999999999999999999999999999999999999999999875 5899999999985 34 46999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|++
T Consensus 213 ~i~~~g~~ 220 (275)
T cd03289 213 KVRQYDSI 220 (275)
T ss_pred eEeecCCH
Confidence 99999985
No 453
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-34 Score=317.26 Aligned_cols=208 Identities=19% Similarity=0.275 Sum_probs=166.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD---PTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~---~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++ |+ +|+|+++|+++.... .++.++|++|++.+++
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~ 92 (246)
T PRK14269 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKI---DGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV 92 (246)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCC---ceEEEECCEecccCCHHHHhhhEEEEecCCcccc
Confidence 49999999999999999999999999999999999975 45 899999999876532 2457999999987776
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.||+||+.++...++..... ......++.+++.+||........ ++
T Consensus 93 -~tv~eni~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~ 138 (246)
T PRK14269 93 -KSIYENISYAPKLHGMIKNK--------------------------------DEEEALVVDCLQKVGLFEEVKDKL-KQ 138 (246)
T ss_pred -ccHHHHhhhHHhhcCcccCh--------------------------------HHHHHHHHHHHHHcCCChhhhHHh-cC
Confidence 69999999865332210000 001123456788888853221111 23
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..+.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. .+ ++|+.++|+..++.+++|+|++|+
T Consensus 139 ~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~tH~~~~~~~~~d~i~~l~ 215 (246)
T PRK14269 139 NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS--HN-LSMIMVTHNMQQGKRVADYTAFFH 215 (246)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--CC-CEEEEEecCHHHHHhhCcEEEEEE
Confidence 456799999999999999999999999999999999999999999999864 24 456667888899999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~g~~~~~~ 229 (246)
T PRK14269 216 LGELIEFGESKEFF 229 (246)
T ss_pred CCEEEEECCHHHHH
Confidence 99999999988764
No 454
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=351.79 Aligned_cols=205 Identities=25% Similarity=0.336 Sum_probs=172.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh----hcccceEEEeccCCCCCCCC
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQNDIHSPFV 956 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~~~~~~~ 956 (1156)
+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 569999999999999999999999999999999999876 468999999987542 12345699999999888899
Q ss_pred CHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001108 957 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1156)
Q Consensus 957 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTs 1036 (1156)
||+||+.+..........+.++..+.++++++.+++.+..+..+ ..|||||||||+||+||+.+|++|||||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987532111111123334457889999999987766653 5699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1037 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1037 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+..
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 219 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLA 219 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChh
Confidence 99999999999999999888999999999986 47788999999986 6899988754
No 455
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.3e-34 Score=319.70 Aligned_cols=215 Identities=26% Similarity=0.279 Sum_probs=173.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc-
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 933 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~- 933 (1156)
.+.++|+++.++ +..+|+||||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccc
Confidence 377889988774 2358999999999999999999999999999999999876 468999999876
Q ss_pred ----CCh---hc----ccceEEEeccCCC--CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccc
Q 001108 934 ----KKQ---ET----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSL 999 (1156)
Q Consensus 934 ----~~~---~~----~~~~~gyv~q~~~--~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~ 999 (1156)
+.. .. .++.++|++|++. +.+.+|+.||+.+....... .......+.++++++.+++.+ ..+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGA--RHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 321 11 2346899999975 34567899998754321110 111233466788999999963 55554
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeE
Q 001108 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 1000 ~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |.|||+++|++. .+.+.+|++
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 4579999999999999999999999999999999999999999999998654 899999999986 477789999
Q ss_pred EEEecCcEEEEecCC
Q 001108 1079 FLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1079 ~~l~~Gg~~~~~g~~ 1093 (1156)
++|++ |++++.|+.
T Consensus 220 ~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQQ-GRVVESGLT 233 (253)
T ss_pred EEEEC-CEEEEECCH
Confidence 99986 688888874
No 456
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.8e-35 Score=390.83 Aligned_cols=257 Identities=19% Similarity=0.229 Sum_probs=196.9
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHh-hcCCC-CC-cceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRID-RVGID-LP-KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNY 154 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 154 (1156)
.+....++||+.++++.++|.- ...+ ....+ -| ..+|+|+||++.|..
T Consensus 1199 ~e~~~~sveRi~e~~~~~~E~~-----~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~------------------------ 1249 (1622)
T PLN03130 1199 AENSLNAVERVGTYIDLPSEAP-----LVIENNRPPPGWPSSGSIKFEDVVLRYRP------------------------ 1249 (1622)
T ss_pred HHHHHHHHHHHHHHhCCCCccc-----ccccCCCCCCCCCCCCcEEEEEEEEEeCC------------------------
Confidence 3677788999998887665510 0000 00011 12 357999999999842
Q ss_pred hhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEE
Q 001108 155 LRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYI 231 (1156)
Q Consensus 155 ~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv 231 (1156)
...++|+|+|++|+|||.+||+|++|||||||+++|.|+++|+ +|+|.+||.++.+... |+.++||
T Consensus 1250 --------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~~IsiV 1318 (1622)
T PLN03130 1250 --------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRKVLGII 1318 (1622)
T ss_pred --------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHhccEEE
Confidence 1124999999999999999999999999999999999999998 9999999999987654 5789999
Q ss_pred cCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccc
Q 001108 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1156)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1156)
||++.+|. .||||||.++.. ...+.+.+++++. ++ +.. +-.|+.+
T Consensus 1319 pQdp~LF~-GTIreNLd~~~~-----~tdeei~~Al~~a---~l------------------------~~~--I~~lp~G 1363 (1622)
T PLN03130 1319 PQAPVLFS-GTVRFNLDPFNE-----HNDADLWESLERA---HL------------------------KDV--IRRNSLG 1363 (1622)
T ss_pred CCCCcccc-ccHHHHhCcCCC-----CCHHHHHHHHHHc---Cc------------------------HHH--HHhCccc
Confidence 99887665 699999986421 1122223332221 10 111 2246788
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 001108 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1156)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1156)
.||.||+.+. .||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. .++| +|++.|.. ++...
T Consensus 1364 Ldt~Vge~G~-nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~T-vI~IAHRL-~tI~~ 1438 (1622)
T PLN03130 1364 LDAEVSEAGE-NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCT-MLIIAHRL-NTIID 1438 (1622)
T ss_pred cCccccCCCC-CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCE-EEEEeCCh-HHHHh
Confidence 8999998655 699999999999999999999999999999999999999999999753 3444 45566654 45566
Q ss_pred cCeEEEEcCCeEEEEcChhHHHH
Q 001108 392 FDDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
||+|++|++|+|+++|+++++++
T Consensus 1439 ~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1439 CDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred CCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999874
No 457
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-34 Score=317.85 Aligned_cols=210 Identities=21% Similarity=0.342 Sum_probs=165.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 17 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14262 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF 96 (250)
T ss_pred eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccC
Confidence 4899999999999999999999999999999999998741 01289999999887532 1246799999998777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+ +||+||+.++....+.... + .....+++.++.+|+....+.. .+
T Consensus 97 ~-~tv~e~l~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~-~~ 141 (250)
T PRK14262 97 P-MSIYDNVAFGPRIHGVKSK-H--------------------------------KLDRIVEESLKKAALWDEVKSE-LN 141 (250)
T ss_pred c-ccHHHHHHHHHHHcCCCcH-H--------------------------------HHHHHHHHHHHHcCCCchhHHH-Hh
Confidence 7 8999999987533211000 0 0012245567777775321111 23
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..+..||||||||++||+||+.+|++++|||||+|||+.+...+.+.|+++.. + ++|+.++|+..++.+++|+|++|
T Consensus 142 ~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tili~sH~~~~~~~~~d~i~~l 218 (250)
T PRK14262 142 KPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--N-YTIVIVTHNIGQAIRIADYIAFM 218 (250)
T ss_pred CChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--C-cEEEEEeCCHHHHHHhCCEEEEE
Confidence 44567999999999999999999999999999999999999999999998742 4 45666778888899999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|+++..|+++++.
T Consensus 219 ~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 219 YRGELIEYGPTREIV 233 (250)
T ss_pred ECCEEEEecCHHHHH
Confidence 999999999988764
No 458
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=4e-34 Score=317.59 Aligned_cols=220 Identities=24% Similarity=0.306 Sum_probs=175.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++++++.++ ++.+|+||||+|++||++||+|+||||||||+++|+|.....+..|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 478899988773 2469999999999999999999999999999999999621125689999999875
Q ss_pred Chh---cccc-eEEEeccCCCCCCCCCHHHHHHHHHHhhCC----CCCChHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 001108 935 KQE---TFAR-ISGYCEQNDIHSPFVTIYESLLFSAWLRLS----PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 1005 (1156)
Q Consensus 935 ~~~---~~~~-~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~----~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~ 1005 (1156)
... ...+ .++|++|++.+++.+|+.+++.+....... ......+..+.+.++++.+++. ...+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 2222 478999999999999999998875432110 1111223345678889999986 34454422
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecC
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1084 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~-~d~v~~l~~G 1084 (1156)
..||||||||++||+||+.+|+||+|||||+|||+.++..++++|+++.++|+|||++||+++. +... +|++++|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeC-
Confidence 2499999999999999999999999999999999999999999999988779999999999863 5455 899999975
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 228 G~i~~~~~~ 236 (252)
T CHL00131 228 GKIIKTGDA 236 (252)
T ss_pred CEEEEecCh
Confidence 799999875
No 459
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=5.9e-33 Score=350.92 Aligned_cols=212 Identities=27% Similarity=0.429 Sum_probs=178.6
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++|+||+|+|+. +++.+|+|+|++|+|||++||+|+||||||||+++|+|... +.+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 46999999999952 12468999999999999999999999999999999999876 568999999988
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 1003 (1156)
+++ ..+++.++||+|++.+++ .|++|||.++. ++.+ ++.++++++.+++.+.. |+.+|..
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCC----HHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 654 456788999999998876 59999998751 2222 34467778887776543 4445544
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
...||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +++|+|++||+++ ..+.||++++|++
T Consensus 599 -G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~ 674 (694)
T TIGR03375 599 -GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN 674 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 35799999999999999999999999999999999999999999999886 4899999999986 4678999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 675 -G~i~e~G~~ 683 (694)
T TIGR03375 675 -GRIVADGPK 683 (694)
T ss_pred -CEEEeeCCH
Confidence 799999873
No 460
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.2e-36 Score=298.29 Aligned_cols=206 Identities=25% Similarity=0.384 Sum_probs=179.8
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh---hcccceEEEeccCCCCCCC
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPF 955 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~ 955 (1156)
+.+.+|++||.+|++|.+++|+|||||||||||.+++++.. ..+|+|+++|.++.. ...++.++..-|+......
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~r 89 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSR 89 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhe
Confidence 45789999999999999999999999999999999998765 568999999988643 4466777888898888888
Q ss_pred CCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001108 956 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035 (1156)
Q Consensus 956 ~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPT 1035 (1156)
+||+|-+.|+..-..... ..++.+..++++++.++|.++.|+.. .+||||||||.-||+.|+.+.+.++||||-
T Consensus 90 lTV~dLv~FGRfPYSqGR-lt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEPL 163 (252)
T COG4604 90 LTVRDLVGFGRFPYSQGR-LTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163 (252)
T ss_pred eEHHHHhhcCCCcccCCC-CchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCcc
Confidence 999999999854332222 33556778999999999999999884 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1036 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1036 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
++||...+..+|+.||+++++ |+|||++.||.++ .-.++|+++.|++ |++++.|+..
T Consensus 164 NNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~ 221 (252)
T COG4604 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPD 221 (252)
T ss_pred cccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHH
Confidence 999999999999999999876 9999999999885 5567899999986 7999999964
No 461
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-34 Score=317.33 Aligned_cols=210 Identities=21% Similarity=0.348 Sum_probs=164.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|..+ |+...+|+|.++|+++... ..++.++||+|++.++
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 48999999999999999999999999999999999853 4212389999999887431 1246799999988777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+ +||+||+.++....+.... + .....++.+++.+|+.....+.. +
T Consensus 99 ~-~tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14239 99 P-MSIYENVVYGLRLKGIKDK-Q--------------------------------VLDEAVEKSLKGASIWDEVKDRL-H 143 (252)
T ss_pred c-CcHHHHHHHHHHHcCCCcH-H--------------------------------HHHHHHHHHHHHcCCchhHHHHH-h
Confidence 6 8999999987543221000 0 00123455677777643211111 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..+..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ + .+|+.++|+..++.+.||+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 144 DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQASRISDRTGFF 220 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHHHhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999998743 3 45666788888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+.+++.
T Consensus 221 ~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 221 LDGDLIEYNDTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998764
No 462
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-34 Score=311.44 Aligned_cols=197 Identities=28% Similarity=0.378 Sum_probs=164.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++..++ ++.+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 67788887763 2469999999999999999999999999999999999865 46899999997653
Q ss_pred hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001108 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1156)
Q Consensus 936 ~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 1015 (1156)
....++.++|++|++.+++.+|+.||+.+....+. .. .+.+.++++.++|.+..+..+ ..||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22255678999999888888999999987654321 11 234788999999987665543 4699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1016 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
++||+||+.+|++|+|||||+|||+.+...+++.|+++.++|+|||++||++. ++. . |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~-~-~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLP-G-ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhc-c-CcEEeec
Confidence 99999999999999999999999999999999999998778999999999986 343 3 8887774
No 463
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-34 Score=320.93 Aligned_cols=206 Identities=21% Similarity=0.323 Sum_probs=162.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCceeEEEEcCccCCCc-----CccceEEEEcCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (1156)
.+|+|+|++|++|++++|+|||||||||||++|+|.++ |+ +|+|.++|.++... ..++.++|++|++
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~---~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 103 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL---KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP 103 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCC---ceEEEECCEEcccccCCHHHHhhceEEEccCC
Confidence 49999999999999999999999999999999999987 35 89999999876421 1235699999998
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 001108 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1156)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1156)
.+++ .||+||+.+++...+... + ....++.+++.+++.......
T Consensus 104 ~l~~-~tv~enl~~~~~~~~~~~------~-----------------------------~~~~~~~~l~~~~l~~~l~~~ 147 (269)
T PRK14259 104 NPFP-KSIYENIAFGARINGYTG------D-----------------------------MDELVERSLRKAAVWDECKDK 147 (269)
T ss_pred ccch-hhHHHHHhhhhhhcCCcH------H-----------------------------HHHHHHHHHHHhCCcchhhhh
Confidence 8777 599999998764332100 0 001234456666664211111
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
. +..+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .+ .+||.++|+..++.++||++
T Consensus 148 ~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~d~i 223 (269)
T PRK14259 148 L-NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK--KN-FTIVIVTHNMQQAVRVSDMT 223 (269)
T ss_pred h-CCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhcCEE
Confidence 1 23445799999999999999999999999999999999999999999999874 23 45666788889999999999
Q ss_pred EEEcC-----------CeEEEEcChhHHHH
Q 001108 396 ILLSD-----------GQIVYQGPRELVLE 414 (1156)
Q Consensus 396 ilL~~-----------G~iv~~G~~~~~~~ 414 (1156)
++|++ |++++.|+++++.+
T Consensus 224 ~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 224 AFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EEEeccccccccccccceEEEeCCHHHHHh
Confidence 99996 67899999988753
No 464
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.2e-34 Score=358.13 Aligned_cols=257 Identities=22% Similarity=0.348 Sum_probs=189.7
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++....++|+.++.+.+++ ..+..+....+.+..+++|+||++.++.
T Consensus 299 ~~~~~~~~~ri~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 346 (585)
T TIGR01192 299 IFEARAKLEDFFDLEDSVFQ-----REEPADAPELPNVKGAVEFRHITFEFAN--------------------------- 346 (585)
T ss_pred HHHHHHHHHHHHHHHcCCcc-----ccCCccCCCCCCCCCeEEEEEEEEECCC---------------------------
Confidence 34566677777776655433 1000000011122346999999998731
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
+ .++|+|+|+++++|+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|+
T Consensus 347 ---~---~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 417 (585)
T TIGR01192 347 ---S---SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQD 417 (585)
T ss_pred ---C---CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccC
Confidence 1 13899999999999999999999999999999999999998 9999999998876543 4689999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.++ +.|++|||.++.. ....+.+.++++.. + .+.. ...+++..||
T Consensus 418 ~~lf-~~ti~~Ni~~~~~----~~~~~~~~~a~~~~---~------------------------~~~~--i~~l~~g~~t 463 (585)
T TIGR01192 418 AGLF-NRSIRENIRLGRE----GATDEEVYEAAKAA---A------------------------AHDF--ILKRSNGYDT 463 (585)
T ss_pred CccC-cccHHHHHhcCCC----CCCHHHHHHHHHHh---C------------------------cHHH--HHhccccccc
Confidence 7666 5799999988631 11111111111110 0 0111 2246677789
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ ..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++.. .++|+|+ ++|..+.+ ..||+
T Consensus 464 ~~~~~~-~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~-isH~~~~~-~~~d~ 538 (585)
T TIGR01192 464 LVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFI-IAHRLSTV-RNADL 538 (585)
T ss_pred hhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEE-EEcChHHH-HcCCE
Confidence 998764 4699999999999999999999999999999999999999999998753 3456555 55555444 67999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++..|+++++.+
T Consensus 539 i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 539 VLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred EEEEECCEEEEECCHHHHHH
Confidence 99999999999999998864
No 465
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=8.8e-35 Score=316.18 Aligned_cols=210 Identities=26% Similarity=0.406 Sum_probs=168.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. .++.+|+|+||+|++|++++|+||||||||||+++|+|... +..|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 68 (220)
T cd03245 2 RIEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDI 68 (220)
T ss_pred eEEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEh
Confidence 3678888877631 12458999999999999999999999999999999999865 4689999999865
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccC------CCCC
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG------LPGV 1005 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~------~~~~ 1005 (1156)
.. ...++.++|++|++.+++ .|+.||+.+... ... +..+.++++.+++.+..+..+. ...+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 138 (220)
T cd03245 69 RQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERG 138 (220)
T ss_pred HHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCC
Confidence 32 224557999999998776 699999976421 111 2345678888888776665431 0123
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ +|||++||+++. .+.+|++++|++ |
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~--~~~~d~v~~l~~-g 214 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSL--LDLVDRIIVMDS-G 214 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHH--HHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999998764 899999999863 479999999986 5
Q ss_pred EEEEec
Q 001108 1086 QEIYVG 1091 (1156)
Q Consensus 1086 ~~~~~g 1091 (1156)
++++.|
T Consensus 215 ~i~~~~ 220 (220)
T cd03245 215 RIVADG 220 (220)
T ss_pred eEeecC
Confidence 776543
No 466
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-34 Score=317.44 Aligned_cols=219 Identities=21% Similarity=0.267 Sum_probs=175.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC--C-CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 367888888763 2469999999999999999999999999999999999743 1 12589999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
.++.. ...++.++|++|++.+++. |+.||+.+...... ....+...+.+.++++.+++.+........ .+.
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDK-SAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhC-Ccc
Confidence 87532 2345679999999988874 99999987643221 112233456678889999885422111121 145
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
.||+|||||++|||||+.+|+||+|||||+|||+.++..+.++|+++. +|+|||+++|++. ++.+.+|++++|.+ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 799999999999999999999999999999999999999999999985 4899999999987 58888999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
+++.|+.
T Consensus 223 i~~~g~~ 229 (250)
T PRK14266 223 IIESGLT 229 (250)
T ss_pred EEEeCCH
Confidence 9998874
No 467
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=312.79 Aligned_cols=173 Identities=24% Similarity=0.295 Sum_probs=136.9
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHH
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~ 963 (1156)
|.==.++|..||+++++||||-||||+.++|+|..+ +.+|. ..+ -.++|=||--.--...||++.|.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~~-------~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EED-------LKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Ccc-------ceEeecceeecCCCCCcHHHHHH
Confidence 444456788999999999999999999999999776 44565 111 13678888655556789999775
Q ss_pred HHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 001108 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043 (1156)
Q Consensus 964 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~ 1043 (1156)
-...-+... .-...++++-++|+++.++.+ .+|||||.|||+||.+|.++.++.+||||++.||.+.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 432211111 123467889999999998875 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1044 AIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1044 ~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
-.+-+.||+... .++|.+++-||..+ +--..||+++..
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 999999999875 48899999999864 555678888875
No 468
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=3.3e-34 Score=305.06 Aligned_cols=170 Identities=41% Similarity=0.673 Sum_probs=147.9
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1156)
..+|+|+|+++++|++++|+||||||||||+++|+|.+ +|. +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 45999999999999999999999999999999999999 887 9999999998765334577999999988889999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
++||+.++.++ .
T Consensus 99 ~~~~i~~~~~~--------------------------------------------------------------------~ 110 (194)
T cd03213 99 VRETLMFAAKL--------------------------------------------------------------------R 110 (194)
T ss_pred HHHHHHHHHHh--------------------------------------------------------------------c
Confidence 99999764210 0
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh-hhHHhhcCeEEEEcCC
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA-PETYDLFDDIILLSDG 401 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~-~~~~~~~D~iilL~~G 401 (1156)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+.|+|+ ++|+. .++.+.+|++++|++|
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii-~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIIC-SIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEE-EecCchHHHHHhcCEEEEEeCC
Confidence 4999999999999999999999999999999999999999999998754 3555555 55555 4788999999999999
Q ss_pred eEEEEc
Q 001108 402 QIVYQG 407 (1156)
Q Consensus 402 ~iv~~G 407 (1156)
++++.|
T Consensus 189 ~i~~~~ 194 (194)
T cd03213 189 RVIYFG 194 (194)
T ss_pred EEEecC
Confidence 998765
No 469
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.4e-34 Score=318.04 Aligned_cols=197 Identities=25% Similarity=0.372 Sum_probs=167.4
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCCHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIY 959 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~ 959 (1156)
+|+||||+|++|++++|+|+||||||||+++|+|... .+|+|.++|.++.. ..+++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999863 37999999987542 22345689999998888889999
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc-------CCCEEEEe
Q 001108 960 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1032 (1156)
Q Consensus 960 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~-------~p~illLD 1032 (1156)
||+.+.... ....+...+.++++++.++|.+..++. +..||||||||++||+||+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 112233355688999999998766665 35699999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1033 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 217 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRR 217 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999877999999999986 47889999999986 688888875
No 470
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-34 Score=315.86 Aligned_cols=210 Identities=22% Similarity=0.351 Sum_probs=163.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++||+++|+|||||||||||++|+|.+++ ....+|+|.++|+++... ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 489999999999999999999999999999999998753 111389999999987531 1245799999998777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+ +||+||+.++....+.... + .....++.+++.+++.+...... +
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~l~~~~-~ 141 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK-K--------------------------------KLDEIVEKSLKGAALWDEVKDRL-K 141 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH-H--------------------------------HHHHHHHHHHHHcCCchhhHHHH-h
Confidence 7 8999999987543321000 0 00123445566776642211111 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. .+. +|+.++|+..++.+.+|+|++|
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~-tiii~sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 142 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK--KDY-TIVIVTHNMQQASRISDKTAFF 218 (250)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCC-eEEEEEeCHHHHHhhCCEEEEE
Confidence 3345799999999999999999999999999999999999999999999873 244 4555778888899999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 219 LNGEIVEFGDTVDLF 233 (250)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
No 471
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-34 Score=317.23 Aligned_cols=207 Identities=18% Similarity=0.282 Sum_probs=162.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCceeEEEEcCccCCCc-----CccceEEEEcCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|..+ |+ +|+|.++|.++... ..++.++|++|++
T Consensus 35 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 111 (268)
T PRK14248 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS---EGEILYEGLNILDSNINVVNLRREIGMVFQKP 111 (268)
T ss_pred eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC---ceEEEECCEEcccccccHHHHhccEEEEecCC
Confidence 49999999999999999999999999999999999864 45 89999999987532 1245799999998
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 001108 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1156)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1156)
.+++. ||+||+.++....+.... . ..+..+...++.+++.......
T Consensus 112 ~~~~~-tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~ 157 (268)
T PRK14248 112 NPFPK-SIYNNITHALKYAGERRK-----S----------------------------VLDEIVEESLTKAALWDEVKDR 157 (268)
T ss_pred ccCcc-cHHHHHHHHHHhcCCCcH-----H----------------------------HHHHHHHHHHHHcCCCcchHHH
Confidence 77774 999999886432210000 0 0011234456667764211111
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
. +..+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.. + ++|+.++|+..++.+++|+|
T Consensus 158 ~-~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d~v 233 (268)
T PRK14248 158 L-HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--E-YSIIIVTHNMQQALRVSDRT 233 (268)
T ss_pred H-hcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEEeCHHHHHHhCCEE
Confidence 1 234457999999999999999999999999999999999999999999998743 3 45666778888899999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001108 396 ILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1156)
++|++|++++.|+.+++.
T Consensus 234 ~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 234 AFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
No 472
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2e-34 Score=308.07 Aligned_cols=194 Identities=24% Similarity=0.300 Sum_probs=161.5
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++ ++.+|+|+||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEccc
Confidence 5677777663 3569999999999999999999999999999999999865 468999999987532
Q ss_pred --hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 937 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 937 --~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
..+++.++|++|++.+++.+|+.||+.+....+. . + ++.+.++++.+++.+..+..+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHH
Confidence 2244678999999888888999999987654331 1 1 235788999999987776653 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~ 1080 (1156)
|++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|.|||+++|++. ++ .+++++.
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~--~~~~~~~ 197 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL-GL--VEARELR 197 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc-cc--cceEEee
Confidence 999999999999999999999999999999999999998778999999999975 22 3566654
No 473
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-34 Score=303.32 Aligned_cols=171 Identities=29% Similarity=0.428 Sum_probs=150.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (178)
T cd03229 1 LELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLT 65 (178)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 35678877763 2469999999999999999999999999999999999865 46899999998753
Q ss_pred h-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 936 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 936 ~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
. ..+++.++|++|++.+++..|++||+.+. |||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~ 103 (178)
T cd03229 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSG 103 (178)
T ss_pred ccchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCH
Confidence 2 23456799999999888889999987542 899
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|++|
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999877 899999999986 466789999999875
No 474
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-34 Score=316.97 Aligned_cols=218 Identities=21% Similarity=0.238 Sum_probs=175.8
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC--C-eEEEEEE
Q 001108 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNIT 928 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~ 928 (1156)
++..++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+ + +.+|+|.
T Consensus 13 ~~~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~ 79 (265)
T PRK14252 13 TQQKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEII 79 (265)
T ss_pred CCceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEE
Confidence 344689999998874 24699999999999999999999999999999999997642 1 2689999
Q ss_pred EcCccCC-------hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccc
Q 001108 929 ISGYPKK-------QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQ 997 (1156)
Q Consensus 929 i~g~~~~-------~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~ 997 (1156)
++|.+.. ...+++.+||++|++.+++. |++||+.+....... ......++.+.++++.+++.+ ..+
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 156 (265)
T PRK14252 80 LHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV--KRRSILEERVENALRNAALWDEVKDRLG 156 (265)
T ss_pred EcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCC--ChHHHHHHHHHHHHHHcCCchhhhHHHh
Confidence 9987642 12345679999999988875 999999876533211 111223456778888888742 223
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 001108 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077 (1156)
Q Consensus 998 ~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~ 1077 (1156)
.. +..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||+
T Consensus 157 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~ 229 (265)
T PRK14252 157 DL-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDY 229 (265)
T ss_pred CC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCE
Confidence 32 357999999999999999999999999999999999999999999999865 699999999986 47789999
Q ss_pred EEEEecCcEEEEecCC
Q 001108 1078 LFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1078 v~~l~~Gg~~~~~g~~ 1093 (1156)
+++|++ |+++..|+.
T Consensus 230 i~~l~~-G~i~~~g~~ 244 (265)
T PRK14252 230 TAYMYM-GELIEFGAT 244 (265)
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999985 788888874
No 475
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-34 Score=318.97 Aligned_cols=212 Identities=28% Similarity=0.381 Sum_probs=168.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-----CCceeEEEEcCccCCCcCc---cceEEEEcCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-----LKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNH 237 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-----~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~ 237 (1156)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ ...+|+|.++|.++..... ++.++|++|++..
T Consensus 15 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~ 94 (272)
T PRK13547 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQP 94 (272)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCC
Confidence 4999999999999999999999999999999999999874 1137999999998754322 3468999998776
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++.+||+||+.++......... .. ..+....++.+++.+||+...++.
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~--~~----------------------------~~~~~~~~~~~l~~~~l~~~~~~~-- 142 (272)
T PRK13547 95 AFAFSAREIVLLGRYPHARRAG--AL----------------------------THRDGEIAWQALALAGATALVGRD-- 142 (272)
T ss_pred CCCCcHHHHHhhcccccccccc--cC----------------------------CHHHHHHHHHHHHHcCcHhhhcCC--
Confidence 6779999999885321000000 00 000112456788899998665544
Q ss_pred ccccCCCChhHHHHHHHHHHHh---------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 001108 318 DEMIRGISGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~---------~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~ 388 (1156)
+..|||||||||+||++|+ .+|++|+|||||+|||+.+...+.+.|+++....+ ++|+.++|+..++
T Consensus 143 ---~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tviiisH~~~~~ 218 (272)
T PRK13547 143 ---VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN-LGVLAIVHDPNLA 218 (272)
T ss_pred ---cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHH
Confidence 3469999999999999999 59999999999999999999999999998765324 4555577888889
Q ss_pred HhhcCeEEEEcCCeEEEEcChhHHH
Q 001108 389 YDLFDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 389 ~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
.+++|++++|++|++++.|+++++.
T Consensus 219 ~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 219 ARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHhCCEEEEEECCeEEEecCHHHHc
Confidence 9999999999999999999987763
No 476
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-34 Score=316.49 Aligned_cols=216 Identities=22% Similarity=0.297 Sum_probs=173.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC--Ce--EEEEEEEc
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GY--ITGNITIS 930 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~~--~~G~i~i~ 930 (1156)
.+.+++++++++ ++.+|+||||+|.+||+++|+|+||||||||+++|+|...+ |. +.|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 378889988773 34689999999999999999999999999999999997642 11 22555565
Q ss_pred CccCC---hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCCC
Q 001108 931 GYPKK---QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGLP 1003 (1156)
Q Consensus 931 g~~~~---~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~~ 1003 (1156)
|.+.. ....++.++|++|++.+++.+|++||+.+...... ....++.++.+.++++.+++.+ ..+..
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 65542 22345679999999999889999999998743321 1122344466888999999864 22332
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+..||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.||++++|++
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~ 227 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN 227 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999864 699999999986 46788999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 228 -g~i~~~g~~ 236 (257)
T PRK14246 228 -GELVEWGSS 236 (257)
T ss_pred -CEEEEECCH
Confidence 688888874
No 477
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-35 Score=319.77 Aligned_cols=210 Identities=25% Similarity=0.335 Sum_probs=163.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++. .+..+|+|+||++++|++++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (234)
T cd03251 1 VEFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVR 67 (234)
T ss_pred CEEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhh
Confidence 356778777641 11358999999999999999999999999999999999876 46899999997653
Q ss_pred h---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHH-----HHHHHHHHc--CCCcccccccCCCCC
Q 001108 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM-----FIDEVMELV--ELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~-----~v~~~l~~l--~l~~~~~~~~~~~~~ 1005 (1156)
. ...++.++|++|++.+++ .||+||+.+.... .......+ .+++.++.+ ++....+.. +
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~ 136 (234)
T cd03251 68 DYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----G 136 (234)
T ss_pred hCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----C
Confidence 2 234567999999988776 6999999875321 11111111 133444444 444443332 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||+|||||++||+||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++ ++ +.||++++|++ |
T Consensus 137 ~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~-G 212 (234)
T cd03251 137 VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TI-ENADRIVVLED-G 212 (234)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEecC-C
Confidence 5799999999999999999999999999999999999999999999986 4899999999986 35 45999999987 5
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 213 ~i~~~~~~ 220 (234)
T cd03251 213 KIVERGTH 220 (234)
T ss_pred eEeeeCCH
Confidence 78887763
No 478
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.5e-35 Score=389.66 Aligned_cols=257 Identities=19% Similarity=0.245 Sum_probs=195.8
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhh-cCC-CCC-cceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDR-VGI-DLP-KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNY 154 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~-~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 154 (1156)
.+....++||+.++.+.++|.- ..... ... .-| ..+|+|+||++.|..
T Consensus 1196 ~~~~~~s~eRi~e~~~~~~e~~-----~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~------------------------ 1246 (1495)
T PLN03232 1196 AENSLNSVERVGNYIDLPSEAT-----AIIENNRPVSGWPSRGSIKFEDVHLRYRP------------------------ 1246 (1495)
T ss_pred HHHHHHHHHHHHHHhcCCcccc-----ccccCCCCCCCCCCCCcEEEEEEEEEECC------------------------
Confidence 4566788899999887665510 00000 001 112 357999999999842
Q ss_pred hhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEE
Q 001108 155 LRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYI 231 (1156)
Q Consensus 155 ~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv 231 (1156)
...++|+|+|++|+|||.+||+||+|||||||+++|.|.++|+ +|+|.+||.++.+... ++.++||
T Consensus 1247 --------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~~i~iV 1315 (1495)
T PLN03232 1247 --------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRRVLSII 1315 (1495)
T ss_pred --------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHhhcEEE
Confidence 1124999999999999999999999999999999999999998 9999999999877654 5789999
Q ss_pred cCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccc
Q 001108 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1156)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1156)
||++.+|. .||||||.++.. ...+.+.++.++ .++ +.. +-.+++.
T Consensus 1316 pQdp~LF~-gTIr~NL~~~~~-----~sdeei~~al~~---a~l------------------------~~~--I~~lp~G 1360 (1495)
T PLN03232 1316 PQSPVLFS-GTVRFNIDPFSE-----HNDADLWEALER---AHI------------------------KDV--IDRNPFG 1360 (1495)
T ss_pred CCCCeeeC-ccHHHHcCCCCC-----CCHHHHHHHHHH---cCC------------------------HHH--HHhCcCC
Confidence 99887765 699999976421 111222222221 111 111 1246778
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 001108 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1156)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1156)
.||.||+.+. +||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++| +|++.|.. ++...
T Consensus 1361 Ldt~v~e~G~-~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~T-vI~IAHRl-~ti~~ 1435 (1495)
T PLN03232 1361 LDAEVSEGGE-NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCT-MLVIAHRL-NTIID 1435 (1495)
T ss_pred CCceecCCCC-CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCE-EEEEeCCH-HHHHh
Confidence 8999998655 699999999999999999999999999999999999999999998752 3445 44566655 55666
Q ss_pred cCeEEEEcCCeEEEEcChhHHHH
Q 001108 392 FDDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
||+|++|++|++++.|+++++++
T Consensus 1436 ~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1436 CDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred CCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999874
No 479
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=5.8e-34 Score=315.56 Aligned_cols=219 Identities=26% Similarity=0.302 Sum_probs=170.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||+|++|+++||+|+||||||||+++|+|.....+.+|+|.++|.++.
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56788888774 24699999999999999999999999999999999997421156899999998754
Q ss_pred hh---c-ccceEEEeccCCCCCCCCCHHHHHHHHHH-hhCC-C--CCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001108 936 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAW-LRLS-P--EVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1156)
Q Consensus 936 ~~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~-lr~~-~--~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~ 1006 (1156)
.. . .++.++|++|++.+++.+|+.+++.+... ++.. . ........+.++++++.+++. +..+..+ ..
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 21 1 23468999999988887887776543211 1100 0 011223345678889999884 3444432 12
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecCc
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 1085 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~-~d~v~~l~~Gg 1085 (1156)
.||||||||++|||||+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||++||+++. +... +|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~i~~l~~-g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQ-G 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCEEEEEEC-C
Confidence 699999999999999999999999999999999999999999999998778999999999863 5454 799999975 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (248)
T PRK09580 223 RIVKSGDF 230 (248)
T ss_pred eEEEeCCH
Confidence 88998874
No 480
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-34 Score=315.11 Aligned_cols=207 Identities=24% Similarity=0.345 Sum_probs=163.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14272 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPF 97 (252)
T ss_pred EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccC
Confidence 49999999999999999999999999999999999987631 1379999999887531 1245799999999899
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc----ccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1156)
+.+|++||+.++....+.... +. ....++..++.+++. +..++
T Consensus 98 ~~~t~~enl~~~~~~~~~~~~-~~--------------------------------~~~~~~~~l~~~~l~~~l~~~~~~ 144 (252)
T PRK14272 98 PTMSVFDNVVAGLKLAGIRDR-DH--------------------------------LMEVAERSLRGAALWDEVKDRLKT 144 (252)
T ss_pred cCCCHHHHHHHHHHhcCCCCH-HH--------------------------------HHHHHHHHHHHcCcchhhhhhhcC
Confidence 999999999876532211000 00 011223344455543 22333
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.++.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++. .+ ++|+.++|+..++.+.+|+
T Consensus 145 -----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~sH~~~~~~~~~d~ 216 (252)
T PRK14272 145 -----PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK--KV-TTIIIVTHNMHQAARVSDT 216 (252)
T ss_pred -----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHHhCCE
Confidence 345799999999999999999999999999999999999999999999874 24 5556678888899999999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001108 395 IILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1156)
|++|++|++++.|+++++.
T Consensus 217 i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 217 TSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988774
No 481
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=4.1e-34 Score=311.80 Aligned_cols=210 Identities=23% Similarity=0.274 Sum_probs=166.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEc--Cc-
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS--GY- 932 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~--g~- 932 (1156)
++++|+++.++.... ...++.+|+|+||+|++||+++|+|+||||||||+++|+|... +..|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCc
Confidence 567888887742100 0012469999999999999999999999999999999999865 457999998 42
Q ss_pred -cCCh---hc----ccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-cccccCCC
Q 001108 933 -PKKQ---ET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLP 1003 (1156)
Q Consensus 933 -~~~~---~~----~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~ 1003 (1156)
+... .. .++.+||++|++.+++.+||+|++.+..... ........+.+.++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 3221 11 2346899999999999999999998864332 12233345567889999999753 3433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+.+||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+...||+++.+.
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 4579999999999999999999999999999999999999999999999877999999999975 3556899998763
No 482
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.7e-34 Score=316.06 Aligned_cols=205 Identities=27% Similarity=0.413 Sum_probs=157.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++ ..|
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~t 91 (237)
T cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NRS 91 (237)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cch
Confidence 4899999999999999999999999999999999999998 999999998765432 245799999987665 579
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHc--CCcccccccccccc
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDEM 320 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~~ 320 (1156)
|+||+.+... . ...+...+... . ...+..++.+ +++...+ ..
T Consensus 92 v~~nl~~~~~--~--~~~~~~~~~~~---~------------------------~~~~~~l~~l~~~~~~~~~-----~~ 135 (237)
T cd03252 92 IRDNIALADP--G--MSMERVIEAAK---L------------------------AGAHDFISELPEGYDTIVG-----EQ 135 (237)
T ss_pred HHHHhhccCC--C--CCHHHHHHHHH---H------------------------cCcHHHHHhCcccccchhh-----cC
Confidence 9999987532 1 11111111000 0 0112234444 3433333 34
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
+..|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++. .+.| |+.++|+..++ ..||++++|++
T Consensus 136 ~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~t-iii~sH~~~~~-~~~d~v~~l~~ 211 (237)
T cd03252 136 GAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC--AGRT-VIIIAHRLSTV-KNADRIIVMEK 211 (237)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCE-EEEEeCCHHHH-HhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999874 3445 55566776777 46999999999
Q ss_pred CeEEEEcChhHHHH
Q 001108 401 GQIVYQGPRELVLE 414 (1156)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1156)
|++++.|+++++.+
T Consensus 212 G~i~~~~~~~~~~~ 225 (237)
T cd03252 212 GRIVEQGSHDELLA 225 (237)
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999887653
No 483
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-34 Score=331.66 Aligned_cols=228 Identities=25% Similarity=0.365 Sum_probs=193.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
-++.++++.+++ ..++|+||||++++||++||||.||||||||+|+|+|... +.+|+|.++|.+.
T Consensus 8 ll~~~~i~K~Fg-------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSFG-------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEcC-------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEc
Confidence 467888877663 4679999999999999999999999999999999999876 6789999999876
Q ss_pred Ch----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhC-CCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 935 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL-SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 935 ~~----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~-~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
.. .....-++.|+|+..+.|++||.||+.++...+. ..-++.+...+...++|+.+++....+..+ .+||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCC
Confidence 42 2344568999999999999999999998766544 234566777888999999999863355554 4699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
.||||.|.|||||..+++||+||||||.|+......+.+.++++.++|.+||++||.++ ++++.|||+.+|++ |+.+-
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~ 225 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVG 225 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEee
Confidence 99999999999999999999999999999999999999999999999999999999997 89999999999987 68888
Q ss_pred ecCC-C-CcchhHHHHH
Q 001108 1090 VGPL-G-RHSCHLISYF 1104 (1156)
Q Consensus 1090 ~g~~-~-~~~~~~~~~f 1104 (1156)
.++. + ....+++...
T Consensus 226 ~~~~~~~~~~~~lv~~M 242 (500)
T COG1129 226 TRPTAAETSEDELVRLM 242 (500)
T ss_pred ecccccCCCHHHHHHHh
Confidence 7773 3 3334555554
No 484
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-34 Score=317.55 Aligned_cols=210 Identities=21% Similarity=0.316 Sum_probs=164.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+.+++|++++|+||||||||||+++|+|.+++. ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 118 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence 4899999999999999999999999999999999998740 01289999999987531 1246799999998878
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+. ||+||+.+.....+.... + .....++++++.+++.....+.. +
T Consensus 119 ~~-tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 163 (272)
T PRK14236 119 PK-SIYENVVYGLRLQGINNR-R--------------------------------VLDEAVERSLRGAALWDEVKDRL-H 163 (272)
T ss_pred cc-cHHHHHHHHHHhcCCCcH-H--------------------------------HHHHHHHHHHHHcCCChhHHHHh-h
Confidence 75 999999887543321000 0 00112455677777753211122 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
.....|||||||||+|||+|+.+|+++||||||+|||+.++..+.+.|++++. +. +|+.++|+..++.+.+|+|++|
T Consensus 164 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~-tiiivtH~~~~~~~~~d~i~~l 240 (272)
T PRK14236 164 ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KY-TIVIVTHNMQQAARVSDYTAFM 240 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CC-eEEEEeCCHHHHHhhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999998753 34 4555778888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+++++.
T Consensus 241 ~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 241 YMGKLVEYGDTDTLF 255 (272)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988763
No 485
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-34 Score=317.69 Aligned_cols=210 Identities=25% Similarity=0.337 Sum_probs=167.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCcC----ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFV----PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~nG~~~~~~~----~~~~~~yv~Q~d~~~~ 239 (1156)
++|+|+|++|++|++++|+|||||||||||++|+|.++|. ...+|+|.++|.++.... .++.++|++|++.+++
T Consensus 35 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~ 114 (276)
T PRK14271 35 TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP 114 (276)
T ss_pred EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC
Confidence 4999999999999999999999999999999999998751 012899999998875431 2467999999887777
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
+||+||+.++......... .+....+..+++.+||....++.. +.
T Consensus 115 -~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~l-~~ 159 (276)
T PRK14271 115 -MSIMDNVLAGVRAHKLVPR---------------------------------KEFRGVAQARLTEVGLWDAVKDRL-SD 159 (276)
T ss_pred -ccHHHHHHHHHHhccCCCH---------------------------------HHHHHHHHHHHHHcCCCchhhhHh-hC
Confidence 8999999886432110000 001123455677888865432222 23
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.+..|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++.. . .+||.++|+..++.+++|++++|+
T Consensus 160 ~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~dri~~l~ 236 (276)
T PRK14271 160 SPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAARISDRAALFF 236 (276)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4557999999999999999999999999999999999999999999998753 3 456667888899999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|++++.|+++++.
T Consensus 237 ~G~i~~~g~~~~~~ 250 (276)
T PRK14271 237 DGRLVEEGPTEQLF 250 (276)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999998874
No 486
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-34 Score=314.82 Aligned_cols=210 Identities=20% Similarity=0.330 Sum_probs=163.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
++|+|+|++|++|++++|+||||||||||+++|+|.++ |....+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14251 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPF 97 (251)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccC
Confidence 49999999999999999999999999999999999986 2111289999999886431 1245799999988777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+ .||+||+.++....+.... + .....++.+++.++|........ +
T Consensus 98 ~-~tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 142 (251)
T PRK14251 98 P-FSVYDNVAYGLKIAGVKDK-----E----------------------------LIDQRVEESLKQAAIWKETKDNL-D 142 (251)
T ss_pred C-CcHHHHHHHHHHHcCCCCH-----H----------------------------HHHHHHHHHHHHcCCCcchHHHh-c
Confidence 5 7999999886533211100 0 00123455677778742110111 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
.....||||||||++|||+|+.+|+++||||||+|||+.+...+.+.|+++. .+ ++|+.++|+..++.+++|+|++|
T Consensus 143 ~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiiiisH~~~~~~~~~d~i~~l 219 (251)
T PRK14251 143 RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK--HQ-YTFIMVTHNLQQAGRISDQTAFL 219 (251)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH--cC-CeEEEEECCHHHHHhhcCEEEEE
Confidence 3445799999999999999999999999999999999999999999999874 23 45666788888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|+++..|+.+++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 220 MNGDLIEAGPTEEMF 234 (251)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
No 487
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-34 Score=317.75 Aligned_cols=211 Identities=25% Similarity=0.375 Sum_probs=165.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. .+.+|+|+||+|++|++++|+|||||||||||++|+|... +..|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYDE------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeH
Confidence 4678899887741 2358999999999999999999999999999999999876 4689999999765
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccccccc-C-----CCCC
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-G-----LPGV 1005 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~-~-----~~~~ 1005 (1156)
.. ..+++.++|++|++.+++. |++||+.+... ... ...+.+.++.+++.+..+... | ...+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NAT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 32 2345679999999887775 99999986521 111 122344555555543332221 0 0114
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++. + +.||++++|++ |
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~-g 213 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDD-G 213 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeC-C
Confidence 6799999999999999999999999999999999999999999999985 58999999999863 4 56999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 214 ~~~~~~~~ 221 (229)
T cd03254 214 KIIEEGTH 221 (229)
T ss_pred eEEEeCCH
Confidence 78887763
No 488
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.1e-34 Score=319.44 Aligned_cols=210 Identities=28% Similarity=0.402 Sum_probs=161.8
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++.. +++.+|+|+||+|++|++++|+|+||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~i~~l~~~~~~~----------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPSR----------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCCC----------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhh
Confidence 567787766311 12458999999999999999999999999999999999865 468999999977532
Q ss_pred ---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccc-------cCCCCCC
Q 001108 937 ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-------VGLPGVS 1006 (1156)
Q Consensus 937 ---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~-------~~~~~~~ 1006 (1156)
...++.++|++|++.+++ .||+||+.+....+ ..+ .+++.++..++.+..+.. ... .+.
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~ 138 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDE----EVEEAAKKANIHDFIMSLPDGYDTLVGE-RGS 138 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHH----HHHHHHHHcChHHHHHhhccccceeecc-CCc
Confidence 223456999999988776 69999998753211 111 122333333332221111 111 145
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++ ++ +.||++++|++ |+
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~ 214 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQ 214 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999987 7999999999986 34 48999999987 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
+++.|+.
T Consensus 215 i~~~~~~ 221 (238)
T cd03249 215 VVEQGTH 221 (238)
T ss_pred EEEeCCH
Confidence 8888764
No 489
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7e-35 Score=360.34 Aligned_cols=213 Identities=28% Similarity=0.435 Sum_probs=178.7
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcC
Q 001108 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1156)
....++|+||+|.|+. ++.+|+|+||+++|||++||+||||||||||++.|.|... +.+|+|.+||
T Consensus 325 ~~~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg 390 (567)
T COG1132 325 TIGSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDG 390 (567)
T ss_pred CCCeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECC
Confidence 3456999999999962 3569999999999999999999999999999999999876 4689999999
Q ss_pred ccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-------ccccccC
Q 001108 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVG 1001 (1156)
Q Consensus 932 ~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~~ 1001 (1156)
.++++ ...++.++||+|++.++. -||+||+.++. ++.++ +.++++++..++.+ -.|+.+|
T Consensus 391 ~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~----eei~~a~k~a~~~d~I~~lp~g~dt~vg 460 (567)
T COG1132 391 IDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATD----EEIEEALKLANAHEFIANLPDGYDTIVG 460 (567)
T ss_pred EehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCH----HHHHHHHHHhChHHHHHhCcccccceec
Confidence 88654 456788999999999887 89999999862 22233 34555555554433 3577777
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1002 ~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
.. +..||||||||++|||||+++|+||+||||||+||+++...|++.++++. +|+|+|+++|+++. ...+|++++|
T Consensus 461 e~-G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst--i~~aD~IiVl 536 (567)
T COG1132 461 ER-GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--IKNADRIIVL 536 (567)
T ss_pred CC-CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH--HHhCCEEEEE
Confidence 43 46799999999999999999999999999999999999999999999876 67999999999863 4559999999
Q ss_pred ecCcEEEEecCC
Q 001108 1082 KRGGQEIYVGPL 1093 (1156)
Q Consensus 1082 ~~Gg~~~~~g~~ 1093 (1156)
++ |+++..|+.
T Consensus 537 ~~-G~i~e~G~h 547 (567)
T COG1132 537 DN-GRIVERGTH 547 (567)
T ss_pred EC-CEEEEecCH
Confidence 97 579999974
No 490
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.2e-34 Score=357.93 Aligned_cols=211 Identities=22% Similarity=0.353 Sum_probs=179.0
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1156)
...++++|++|.|+. ++.+|+|+|+++++||++||+|+||||||||+++|+|..+ +.+|+|.+||.
T Consensus 338 ~~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~ 403 (592)
T PRK10790 338 SGRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGR 403 (592)
T ss_pred CCeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCE
Confidence 346999999999851 1358999999999999999999999999999999999876 56899999998
Q ss_pred cCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCC
Q 001108 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGL 1002 (1156)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~ 1002 (1156)
++++ ..+++.++||+|++.+++. |++|||.++. +.+ ++.++++++.+++.+.. |+.+|.
T Consensus 404 ~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e 472 (592)
T PRK10790 404 PLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGE 472 (592)
T ss_pred EhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccC
Confidence 8653 4567889999999999875 9999998852 122 34578888888877543 344554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
. ...||||||||++|||||+++|+||+||||||+||+++++.|++.|+++.+ ++|||++||+++ ....||++++|+
T Consensus 473 ~-g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~ 548 (592)
T PRK10790 473 Q-GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLH 548 (592)
T ss_pred C-CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEE
Confidence 3 357999999999999999999999999999999999999999999998864 699999999985 567799999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 549 ~-G~i~~~G~~ 558 (592)
T PRK10790 549 R-GQAVEQGTH 558 (592)
T ss_pred C-CEEEEEcCH
Confidence 5 799999884
No 491
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=318.81 Aligned_cols=203 Identities=21% Similarity=0.353 Sum_probs=162.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCceeEEEEcCccCCCc-----CccceEEEEcCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (1156)
.+|+|+|++|++|++++|+|||||||||||++|+|..+ |+ +|+|.++|.++... ..++.++||+|++
T Consensus 53 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 129 (286)
T PRK14275 53 EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHT---TGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129 (286)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCC---ceEEEECCEEhhhcccchHHhhhcEEEECCCC
Confidence 38999999999999999999999999999999999854 35 99999999886432 1245799999998
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc----cc
Q 001108 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VC 311 (1156)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~ 311 (1156)
.+++ .||+||+.|+....+.... + .....+..+++.+|+. +.
T Consensus 130 ~l~~-~tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~l~~~ 175 (286)
T PRK14275 130 NPFP-KSIFDNIAYGPRLHGINDK-----K----------------------------QLEEIVEKSLRKAALWDEVSDR 175 (286)
T ss_pred CCCc-cCHHHHHHhHHHhcCCCcH-----H----------------------------HHHHHHHHHHHHhCCccchhhH
Confidence 7777 4999999987543211000 0 0012244556677763 22
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 001108 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1156)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1156)
.+ ..+..|||||||||+||+||+.+|++|||||||+|||+.+...+.+.|+++.. + .+||.++|+..++.++
T Consensus 176 ~~-----~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~-~tvIivsH~~~~~~~~ 247 (286)
T PRK14275 176 LD-----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--S-YTIMIVTHNMQQASRV 247 (286)
T ss_pred hh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHHh
Confidence 23 33457999999999999999999999999999999999999999999998742 3 4566678888999999
Q ss_pred cCeEEEEcCCeEEEEcChhHHH
Q 001108 392 FDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
+|++++|++|++++.|+++++.
T Consensus 248 ~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 248 SDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999988764
No 492
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-34 Score=314.78 Aligned_cols=209 Identities=22% Similarity=0.326 Sum_probs=163.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCC-c---CccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDE-F---VPQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~nG~~~~~-~---~~~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|.++.. . ..++.++|++|++.+++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 96 (249)
T PRK14253 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP 96 (249)
T ss_pred eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc
Confidence 49999999999999999999999999999999999987520 128999999987642 1 12457999999988787
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.||+||+.++....+.... + .....++..++.+|+.+...... +.
T Consensus 97 -~tv~~~l~~~~~~~~~~~~-~--------------------------------~~~~~~~~~~~~~~l~~~~~~~~-~~ 141 (249)
T PRK14253 97 -MSIYENVAYGLRAQGIKDK-K--------------------------------VLDEVVERSLRGAALWDEVKDRL-KS 141 (249)
T ss_pred -ccHHHHHHhHHHhcCCCch-H--------------------------------HHHHHHHHHHHHcCCchhhhHHh-hc
Confidence 8999999887533211000 0 00112344566667643221111 23
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
....|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++.+ + ++|+.++|+..++.+.+|++++|+
T Consensus 142 ~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sh~~~~~~~~~d~i~~l~ 218 (249)
T PRK14253 142 HAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--N-YTIVIVTHSMQQARRISDRTAFFL 218 (249)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEecCHHHHHHhCCEEEEEE
Confidence 3457999999999999999999999999999999999999999999998753 3 455667788889999999999999
Q ss_pred CCeEEEEcChhHH
Q 001108 400 DGQIVYQGPRELV 412 (1156)
Q Consensus 400 ~G~iv~~G~~~~~ 412 (1156)
+|++++.|+.+++
T Consensus 219 ~G~i~~~g~~~~~ 231 (249)
T PRK14253 219 MGELVEHDDTQVI 231 (249)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999998765
No 493
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-34 Score=314.29 Aligned_cols=211 Identities=21% Similarity=0.323 Sum_probs=165.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCcC-----ccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~nG~~~~~~~-----~~~~~~yv~Q~d~~~ 238 (1156)
++|+|+||++++|++++|+||||||||||+++|+|..+ |....+|+|+++|.++.... .++.++|++|++.++
T Consensus 19 ~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 98 (251)
T PRK14244 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPF 98 (251)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccc
Confidence 49999999999999999999999999999999999976 21112899999998764321 246799999998777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+. ||+||+.++....+.....+ +....++.+++.+||.+...+.+ +
T Consensus 99 ~~-tv~~ni~~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (251)
T PRK14244 99 PK-SIYDNVAYGPKLHGLAKNKK--------------------------------KLDEIVEKSLTSVGLWEELGDRL-K 144 (251)
T ss_pred cC-CHHHHHHHHHHhcCCCCCHH--------------------------------HHHHHHHHHHHHcCCCchhhhHh-h
Confidence 75 99999988643221100000 01123456788889865322222 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..+..|||||||||+||++|+.+|+++||||||+|||+.+...+.+.|+++. .+ .+|+.++|+..++.+++|+|++|
T Consensus 145 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiiisH~~~~~~~~~d~i~~l 221 (251)
T PRK14244 145 DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--KN-FTIIVVTHSMKQAKKVSDRVAFF 221 (251)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHhhcCEEEEE
Confidence 3445799999999999999999999999999999999999999999999863 34 45556778888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 222 QSGRIVEYNTTQEIF 236 (251)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988763
No 494
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=314.99 Aligned_cols=212 Identities=22% Similarity=0.291 Sum_probs=167.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+. ..+|+|.++|+++... ..++.++|++|+..++
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~ 100 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF 100 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccC
Confidence 48999999999999999999999999999999999998741 2479999999886321 1245699999988777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+ +||+||+.++....+.... .+....+..+++.+++.+..+... +
T Consensus 101 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 145 (261)
T PRK14258 101 P-MSVYDNVAYGVKIVGWRPK---------------------------------LEIDDIVESALKDADLWDEIKHKI-H 145 (261)
T ss_pred c-ccHHHHHHHHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCcchhhhHh-c
Confidence 7 8999999886432211000 000123456777888754222112 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++++...+ ++||.++|+..++.++||+|++|
T Consensus 146 ~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~-~tiiivsH~~~~i~~~~d~i~~l 224 (261)
T PRK14258 146 KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSE-LTMVIVSHNLHQVSRLSDFTAFF 224 (261)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHhcCEEEEE
Confidence 34557999999999999999999999999999999999999999999998754334 45555788889999999999999
Q ss_pred cC-----CeEEEEcChhHHH
Q 001108 399 SD-----GQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~-----G~iv~~G~~~~~~ 413 (1156)
++ |+++++|+++++.
T Consensus 225 ~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 225 KGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred ccCCCcCceEEEeCCHHHHH
Confidence 99 9999999999874
No 495
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4e-34 Score=318.99 Aligned_cols=198 Identities=23% Similarity=0.228 Sum_probs=159.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++ . +|+|.++|.++.... .++.++||+|++.+++ .|
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~t 92 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GT 92 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-hh
Confidence 38999999999999999999999999999999999997 5 899999999876543 2467999999988876 59
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCC-------ccccccc
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL-------DVCADTM 315 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~dt~ 315 (1156)
|++|+.+... ...+.. ...++.+|| +...+|.
T Consensus 93 v~~nl~~~~~-----~~~~~~------------------------------------~~~l~~~gL~~~~~~~p~~l~~~ 131 (275)
T cd03289 93 FRKNLDPYGK-----WSDEEI------------------------------------WKVAEEVGLKSVIEQFPGQLDFV 131 (275)
T ss_pred HHHHhhhccC-----CCHHHH------------------------------------HHHHHHcCCHHHHHhCcccccce
Confidence 9999963211 011111 112223333 4456777
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
+++ ....||||||||++|||||+.+|+|++|||||++||+.+...+.+.|++.. . +++||.++|....+. .+|+|
T Consensus 132 ~~~-~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~-~~tii~isH~~~~i~-~~dri 206 (275)
T cd03289 132 LVD-GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--A-DCTVILSEHRIEAML-ECQRF 206 (275)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--C-CCEEEEEECCHHHHH-hCCEE
Confidence 766 456799999999999999999999999999999999999999999999752 3 345566777776665 59999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001108 396 ILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1156)
++|++|++++.|++++++.
T Consensus 207 ~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 207 LVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEecCCeEeecCCHHHHhh
Confidence 9999999999999999865
No 496
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=313.94 Aligned_cols=210 Identities=21% Similarity=0.304 Sum_probs=164.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|..++. ...+|+|.++|+++... ..++.++|++|++.++
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 99 (253)
T PRK14261 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPF 99 (253)
T ss_pred eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccC
Confidence 4999999999999999999999999999999999987531 11389999999987543 1245799999998887
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+ .||+||+.|+.+..+.... . .....+..+++.++|.+...+.. +
T Consensus 100 ~-~tv~eni~~~~~~~~~~~~----~-----------------------------~~~~~~~~~l~~~~l~~~l~~~~-~ 144 (253)
T PRK14261 100 P-KSIYENVAYGPRIHGEKNK----K-----------------------------TLDTIVEKSLKGAALWDEVKDRL-H 144 (253)
T ss_pred c-ccHHHHHHhhHHhcCCCCH----H-----------------------------HHHHHHHHHHHHhcCchhhHHHh-h
Confidence 7 4999999987543221000 0 00122445566777643211111 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
...+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.. + .+|+.++|+..++.+.+|++++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~-~tvii~sh~~~~~~~~~d~v~~l 221 (253)
T PRK14261 145 DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--E-YTVIIVTHNMQQAARVSDYTGFM 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--C-ceEEEEEcCHHHHHhhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999998753 3 45555778888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|+++..|+.+++.
T Consensus 222 ~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 222 YLGKLIEFDKTTQIF 236 (253)
T ss_pred ECCEEEEcCCHHHHH
Confidence 999999999988763
No 497
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=5.6e-34 Score=315.07 Aligned_cols=198 Identities=24% Similarity=0.328 Sum_probs=166.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+++||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc--
Confidence 478899988874 2469999999999999999999999999999999999876 46899999872
Q ss_pred ChhcccceEEEeccCCCCCCC--CCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001108 935 KQETFARISGYCEQNDIHSPF--VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~--~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 1012 (1156)
..++|++|++.+++. .|+.+++.+. .... ++.+.++++.+++.+..+.. +..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHH
Confidence 358999999877665 4777776432 1111 23467899999998877765 35699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
|||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|+ + ++++.|
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g 202 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSG 202 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeC
Confidence 99999999999999999999999999999999999999998765 899999999987 4778899999995 4 588888
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
+.
T Consensus 203 ~~ 204 (251)
T PRK09544 203 TP 204 (251)
T ss_pred CH
Confidence 75
No 498
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.9e-34 Score=357.83 Aligned_cols=259 Identities=24% Similarity=0.387 Sum_probs=190.9
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCC-cceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLP-KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1156)
.++.+..++|+.+.++.+.+. ....+....+.+ ...++|+||++.++..
T Consensus 301 ~~~~~~~~~ri~~~l~~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~f~y~~~------------------------- 350 (576)
T TIGR02204 301 LQRAAGAAERLIELLQAEPDI-----KAPAHPKTLPVPLRGEIEFEQVNFAYPAR------------------------- 350 (576)
T ss_pred HHHHHHHHHHHHHHhCCCCcC-----CCCCCCccCCcCCCceEEEEEEEEECCCC-------------------------
Confidence 456777788887777654320 000000011112 2359999999997420
Q ss_pred hcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcC
Q 001108 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1156)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q 233 (1156)
..+.+|+|+|++++|||.++|+||||||||||+++|+|.++|. +|+|.+||.++++... ++.++||+|
T Consensus 351 ------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~~~Q 421 (576)
T TIGR02204 351 ------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQ 421 (576)
T ss_pred ------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHHhceEEcc
Confidence 1135999999999999999999999999999999999999998 9999999999876654 467999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 001108 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1156)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1156)
++. +++.|++|||.++... ...+.+.++.+. .+ ..+.++ .+++..|
T Consensus 422 ~~~-lf~~Ti~~Ni~~~~~~----~~~~~~~~~l~~---~~------------------------l~~~i~--~l~~gl~ 467 (576)
T TIGR02204 422 DPV-LFAASVMENIRYGRPD----ATDEEVEAAARA---AH------------------------AHEFIS--ALPEGYD 467 (576)
T ss_pred CCc-cccccHHHHHhcCCCC----CCHHHHHHHHHH---cC------------------------cHHHHH--hCCCCCC
Confidence 765 5567999999875311 111111111111 00 011222 3566778
Q ss_pred ccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 001108 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1156)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1156)
|.+|+.+ ..||||||||++|||+++++|++++||||||+||+.++..+++.|+++. .++|+|+ ++|.. +....+|
T Consensus 468 t~i~~~g-~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~Ii-itH~~-~~~~~~d 542 (576)
T TIGR02204 468 TYLGERG-VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLI-IAHRL-ATVLKAD 542 (576)
T ss_pred ceeCCCC-CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEE-Eecch-HHHHhCC
Confidence 9999864 4699999999999999999999999999999999999999999998863 3455555 55554 5567899
Q ss_pred eEEEEcCCeEEEEcChhHHHH
Q 001108 394 DIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~ 414 (1156)
+|++|++|+++..|+++++.+
T Consensus 543 ~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 543 RIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred EEEEEECCEEEeeecHHHHHH
Confidence 999999999999999988754
No 499
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=321.33 Aligned_cols=221 Identities=23% Similarity=0.287 Sum_probs=174.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC---CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1156)
.+.++|+++.++ ++.+|+++||+|++||+++|+|+|||||||||++|+|...+ .+..|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588999998874 24699999999999999999999999999999999997541 24689999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCC---------CCC-hHHHHHHHHHHHHHcCCCccc
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP---------EVD-SETRKMFIDEVMELVELNPLR 996 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~---------~~~-~~~~~~~v~~~l~~l~l~~~~ 996 (1156)
.++.. ...++.++|++|++.+++ .||+||+.+....+... ... .+..++.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87532 223467999999988777 59999999865322100 011 122345678899999885322
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 001108 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1076 (1156)
Q Consensus 997 ~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d 1076 (1156)
...... .+..||||||||++||+||+.+|+||||||||+|||+.++..++++|+++++ +.|||+++|+++ .+.+.||
T Consensus 191 ~~~~~~-~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLDD-NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhcC-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 111111 1457999999999999999999999999999999999999999999999876 589999999987 4778899
Q ss_pred eEE-EEecCcEEEEecCC
Q 001108 1077 ELF-LMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1077 ~v~-~l~~Gg~~~~~g~~ 1093 (1156)
+++ +|++ |++++.|+.
T Consensus 268 ~i~~~l~~-G~i~~~g~~ 284 (305)
T PRK14264 268 QTAVFLTG-GELVEYDDT 284 (305)
T ss_pred EEEEEecC-CEEEEeCCH
Confidence 975 5664 799999874
No 500
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.3e-33 Score=313.64 Aligned_cols=206 Identities=26% Similarity=0.370 Sum_probs=164.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCcc-----CCCcCc-------cceEEEEcC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD-----MDEFVP-------QRTAAYISQ 233 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~-----~~~~~~-------~~~~~yv~Q 233 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.+ +..... ++.++|++|
T Consensus 17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q 93 (253)
T TIGR02323 17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ 93 (253)
T ss_pred eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEecccccccccccCCHHHHHHhhhcceEEEEe
Confidence 3899999999999999999999999999999999999998 9999999976 543221 245899999
Q ss_pred CCC--CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-
Q 001108 234 HDN--HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV- 310 (1156)
Q Consensus 234 ~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~- 310 (1156)
++. ..+.+|+.||+.+....... .... +....++.+++.+|+..
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~--------------------------------~~~~~~~~~l~~l~l~~~ 140 (253)
T TIGR02323 94 NPRDGLRMRVSAGANIGERLMAIGA-RHYG--------------------------------NIRAAAHDWLEEVEIDPT 140 (253)
T ss_pred CcccccCccccHHHHHHHHHHHhcc-cchH--------------------------------HHHHHHHHHHHHcCCChh
Confidence 864 45667999999764311100 0000 01123567888999963
Q ss_pred cccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 001108 311 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (1156)
Q Consensus 311 ~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1156)
..++. ++.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++... .+.+||.++|+..++.+
T Consensus 141 ~~~~~-----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~vsH~~~~~~~ 214 (253)
T TIGR02323 141 RIDDL-----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD-LGLAVIIVTHDLGVARL 214 (253)
T ss_pred hhhcC-----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHH
Confidence 44544 4569999999999999999999999999999999999999999999987543 34455557888899999
Q ss_pred hcCeEEEEcCCeEEEEcChhHHH
Q 001108 391 LFDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 391 ~~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
.+|++++|++|++++.|+.+++.
T Consensus 215 ~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 215 LAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred hcCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999988764
Done!