Query 001108
Match_columns 1156
No_of_seqs 780 out of 6088
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 11:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 7.2E-76 2.5E-80 781.0 53.7 216 853-1093 1074-1299(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 7.8E-71 2.7E-75 731.0 55.1 216 853-1093 1028-1253(1284)
3 3bk7_A ABC transporter ATP-bin 100.0 1.2E-57 4.3E-62 559.0 34.8 201 855-1094 357-559 (607)
4 1yqt_A RNAse L inhibitor; ATP- 100.0 1.3E-57 4.5E-62 553.7 33.0 201 855-1094 287-489 (538)
5 2iw3_A Elongation factor 3A; a 100.0 3.1E-56 1.1E-60 561.9 37.5 183 166-413 449-634 (986)
6 3ozx_A RNAse L inhibitor; ATP 100.0 1.8E-56 6.3E-61 541.9 31.8 215 855-1106 269-485 (538)
7 3ux8_A Excinuclease ABC, A sub 100.0 2.1E-55 7.3E-60 551.4 35.0 213 165-412 31-296 (670)
8 3j16_B RLI1P; ribosome recycli 100.0 1.2E-54 4E-59 531.4 29.5 188 882-1094 361-555 (608)
9 3tui_C Methionine import ATP-b 100.0 1.1E-42 3.8E-47 397.6 27.6 218 855-1093 24-248 (366)
10 3tif_A Uncharacterized ABC tra 100.0 3.4E-42 1.2E-46 375.6 27.0 219 856-1093 2-229 (235)
11 3tui_C Methionine import ATP-b 100.0 5E-42 1.7E-46 392.3 29.0 223 118-413 24-252 (366)
12 3gfo_A Cobalt import ATP-bindi 100.0 3.3E-42 1.1E-46 383.0 25.2 215 855-1093 7-228 (275)
13 3rlf_A Maltose/maltodextrin im 100.0 5.9E-42 2E-46 394.2 27.8 214 855-1093 3-218 (381)
14 2pcj_A ABC transporter, lipopr 100.0 8E-42 2.7E-46 370.1 26.8 212 855-1092 4-222 (224)
15 2olj_A Amino acid ABC transpor 100.0 1E-41 3.5E-46 376.9 28.0 214 855-1093 24-243 (263)
16 3fvq_A Fe(3+) IONS import ATP- 100.0 4.4E-42 1.5E-46 392.8 25.1 214 855-1093 4-223 (359)
17 1b0u_A Histidine permease; ABC 100.0 1.2E-41 4E-46 377.3 27.0 214 855-1093 6-237 (262)
18 3rlf_A Maltose/maltodextrin im 100.0 1.9E-41 6.5E-46 390.0 29.5 207 165-414 16-223 (381)
19 3fvq_A Fe(3+) IONS import ATP- 100.0 1.6E-41 5.3E-46 388.2 28.1 207 165-414 17-228 (359)
20 3pih_A Uvrabc system protein A 100.0 4.4E-41 1.5E-45 424.7 34.2 196 883-1093 599-897 (916)
21 1vpl_A ABC transporter, ATP-bi 100.0 2.1E-41 7.1E-46 373.2 26.9 214 855-1093 15-230 (256)
22 1g6h_A High-affinity branched- 100.0 1.6E-41 5.5E-46 375.5 23.7 217 855-1093 7-237 (257)
23 3nh6_A ATP-binding cassette SU 100.0 4.9E-42 1.7E-46 386.3 19.5 257 78-414 18-277 (306)
24 3tif_A Uncharacterized ABC tra 100.0 7.7E-41 2.6E-45 364.9 27.7 207 165-412 18-232 (235)
25 2r6f_A Excinuclease ABC subuni 100.0 2.2E-40 7.6E-45 414.0 34.0 195 883-1093 639-937 (972)
26 1ji0_A ABC transporter; ATP bi 100.0 5.2E-41 1.8E-45 367.6 24.9 213 855-1093 6-223 (240)
27 1z47_A CYSA, putative ABC-tran 100.0 4E-41 1.4E-45 385.3 24.8 215 855-1093 14-230 (355)
28 2it1_A 362AA long hypothetical 100.0 6E-41 2.1E-45 385.2 26.4 213 856-1093 4-218 (362)
29 2yyz_A Sugar ABC transporter, 100.0 5E-41 1.7E-45 385.5 25.3 213 856-1093 4-218 (359)
30 4g1u_C Hemin import ATP-bindin 100.0 4E-41 1.4E-45 373.4 23.7 213 855-1094 11-233 (266)
31 1g29_1 MALK, maltose transport 100.0 9.5E-41 3.3E-45 385.8 27.7 213 856-1093 4-224 (372)
32 2yyz_A Sugar ABC transporter, 100.0 1.6E-40 5.4E-45 381.3 29.3 206 166-414 17-223 (359)
33 4g1u_C Hemin import ATP-bindin 100.0 1.3E-40 4.6E-45 369.1 27.6 204 165-413 24-236 (266)
34 3gfo_A Cobalt import ATP-bindi 100.0 7.4E-41 2.5E-45 372.1 25.5 206 166-414 22-233 (275)
35 2olj_A Amino acid ABC transpor 100.0 3.3E-40 1.1E-44 364.8 29.6 205 166-414 38-248 (263)
36 2it1_A 362AA long hypothetical 100.0 1.9E-40 6.5E-45 381.1 28.3 206 166-414 17-223 (362)
37 2pcj_A ABC transporter, lipopr 100.0 2.4E-40 8.1E-45 358.6 27.1 199 166-409 18-223 (224)
38 1v43_A Sugar-binding transport 100.0 9.4E-41 3.2E-45 385.0 24.9 213 856-1093 12-226 (372)
39 1b0u_A Histidine permease; ABC 100.0 2.6E-40 8.8E-45 366.5 26.6 205 166-414 20-242 (262)
40 1g29_1 MALK, maltose transport 100.0 4E-40 1.4E-44 380.5 29.3 206 166-414 17-229 (372)
41 1oxx_K GLCV, glucose, ABC tran 100.0 5.9E-41 2E-45 385.3 21.9 213 856-1093 4-225 (353)
42 1z47_A CYSA, putative ABC-tran 100.0 2.6E-40 8.8E-45 378.6 26.6 206 166-414 29-235 (355)
43 1v43_A Sugar-binding transport 100.0 3.2E-40 1.1E-44 380.6 27.0 206 166-414 25-231 (372)
44 3d31_A Sulfate/molybdate ABC t 100.0 3.4E-40 1.1E-44 377.5 26.9 201 167-413 15-216 (348)
45 2vf7_A UVRA2, excinuclease ABC 100.0 5.2E-40 1.8E-44 411.7 30.9 106 981-1093 708-822 (842)
46 1vpl_A ABC transporter, ATP-bi 100.0 6E-40 2.1E-44 361.6 27.5 205 166-414 29-235 (256)
47 1oxx_K GLCV, glucose, ABC tran 100.0 3.5E-40 1.2E-44 378.8 25.3 205 167-414 20-230 (353)
48 2d2e_A SUFC protein; ABC-ATPas 100.0 4.1E-40 1.4E-44 362.7 24.8 218 856-1093 4-228 (250)
49 3d31_A Sulfate/molybdate ABC t 100.0 1.9E-40 6.6E-45 379.5 22.7 209 856-1093 2-212 (348)
50 1ji0_A ABC transporter; ATP bi 100.0 9.5E-40 3.2E-44 357.6 26.6 203 166-413 20-227 (240)
51 1g6h_A High-affinity branched- 100.0 4.8E-40 1.7E-44 363.6 24.5 215 166-411 21-239 (257)
52 2yz2_A Putative ABC transporte 100.0 3.3E-40 1.1E-44 366.7 23.2 217 856-1093 3-222 (266)
53 2ihy_A ABC transporter, ATP-bi 100.0 2.6E-40 8.8E-45 369.1 21.0 220 852-1093 18-247 (279)
54 2onk_A Molybdate/tungstate ABC 100.0 5.1E-40 1.7E-44 358.9 22.4 208 856-1093 2-211 (240)
55 2onk_A Molybdate/tungstate ABC 100.0 1.1E-39 3.6E-44 356.4 24.8 202 167-414 14-216 (240)
56 2ygr_A Uvrabc system protein A 100.0 7.6E-39 2.6E-43 401.7 35.2 195 883-1093 657-955 (993)
57 2zu0_C Probable ATP-dependent 100.0 3.2E-39 1.1E-43 358.7 27.3 220 855-1093 20-249 (267)
58 3nh6_A ATP-binding cassette SU 100.0 1.4E-39 4.6E-44 366.4 23.2 213 852-1093 50-272 (306)
59 2nq2_C Hypothetical ABC transp 100.0 5E-39 1.7E-43 354.1 26.5 207 855-1093 4-212 (253)
60 2ff7_A Alpha-hemolysin translo 100.0 5.1E-39 1.8E-43 353.0 22.9 212 854-1093 6-227 (247)
61 2qi9_C Vitamin B12 import ATP- 100.0 3.8E-39 1.3E-43 353.7 21.4 193 883-1093 15-217 (249)
62 2yz2_A Putative ABC transporte 100.0 1E-38 3.5E-43 354.6 24.8 205 165-414 20-227 (266)
63 1sgw_A Putative ABC transporte 100.0 1.2E-39 4.2E-44 349.2 16.2 197 855-1081 10-206 (214)
64 2ixe_A Antigen peptide transpo 100.0 3.1E-39 1.1E-43 359.4 19.6 214 855-1093 16-240 (271)
65 2ihy_A ABC transporter, ATP-bi 100.0 1.1E-38 3.9E-43 355.8 23.0 208 166-412 35-250 (279)
66 2ff7_A Alpha-hemolysin translo 100.0 2.9E-38 9.9E-43 347.0 24.2 200 165-413 22-231 (247)
67 2d2e_A SUFC protein; ABC-ATPas 100.0 3.2E-38 1.1E-42 347.7 22.7 204 166-411 17-230 (250)
68 4a82_A Cystic fibrosis transme 100.0 8.9E-39 3E-43 393.6 19.4 258 78-414 304-564 (578)
69 2ixe_A Antigen peptide transpo 100.0 3.3E-38 1.1E-42 351.1 21.4 209 165-414 32-245 (271)
70 1mv5_A LMRA, multidrug resista 100.0 6.4E-39 2.2E-43 351.9 15.0 210 856-1093 2-221 (243)
71 2nq2_C Hypothetical ABC transp 100.0 2.6E-37 8.8E-42 340.5 27.8 196 166-412 19-215 (253)
72 3qf4_A ABC transporter, ATP-bi 100.0 2.1E-38 7.1E-43 390.4 20.3 258 78-414 306-566 (587)
73 2zu0_C Probable ATP-dependent 100.0 1.6E-37 5.5E-42 345.0 25.4 220 166-422 34-261 (267)
74 2pjz_A Hypothetical protein ST 100.0 2.1E-37 7.1E-42 342.4 22.2 206 856-1093 2-210 (263)
75 2ghi_A Transport protein; mult 100.0 1.4E-37 4.7E-42 344.2 20.4 211 855-1093 17-237 (260)
76 2pjz_A Hypothetical protein ST 100.0 4.3E-37 1.5E-41 339.9 24.0 194 165-413 18-214 (263)
77 1mv5_A LMRA, multidrug resista 100.0 5.7E-38 1.9E-42 344.3 16.8 201 166-414 16-226 (243)
78 2yl4_A ATP-binding cassette SU 100.0 3E-37 1E-41 381.5 23.8 255 78-414 305-570 (595)
79 2qi9_C Vitamin B12 import ATP- 100.0 3.9E-37 1.3E-41 337.7 21.1 196 167-412 15-220 (249)
80 2ghi_A Transport protein; mult 100.0 6.6E-37 2.3E-41 338.8 22.9 200 165-414 33-242 (260)
81 3qf4_B Uncharacterized ABC tra 100.0 6.8E-38 2.3E-42 387.0 15.9 256 78-414 320-578 (598)
82 3b5x_A Lipid A export ATP-bind 100.0 6.7E-37 2.3E-41 377.5 23.7 257 78-414 308-567 (582)
83 3gd7_A Fusion complex of cysti 100.0 2.2E-37 7.7E-42 359.0 17.7 199 165-414 34-242 (390)
84 3gd7_A Fusion complex of cysti 100.0 2.2E-37 7.5E-42 359.1 17.3 211 854-1093 18-237 (390)
85 3b60_A Lipid A export ATP-bind 100.0 7.2E-37 2.5E-41 377.2 22.9 257 78-414 308-567 (582)
86 4f4c_A Multidrug resistance pr 100.0 7.3E-38 2.5E-42 416.5 14.9 261 78-414 1041-1304(1321)
87 2pze_A Cystic fibrosis transme 100.0 8.3E-37 2.9E-41 331.9 20.1 200 855-1093 6-213 (229)
88 1sgw_A Putative ABC transporte 100.0 5.9E-37 2E-41 328.4 17.5 188 166-403 23-210 (214)
89 3b5x_A Lipid A export ATP-bind 100.0 1.3E-34 4.3E-39 357.2 39.9 214 853-1093 339-562 (582)
90 2pze_A Cystic fibrosis transme 100.0 3.1E-36 1.1E-40 327.4 22.2 196 165-413 21-217 (229)
91 2cbz_A Multidrug resistance-as 100.0 2.1E-36 7.1E-41 330.3 19.9 199 856-1093 4-212 (237)
92 3b60_A Lipid A export ATP-bind 100.0 3.3E-34 1.1E-38 353.4 41.7 213 854-1093 340-562 (582)
93 3qf4_B Uncharacterized ABC tra 100.0 2.1E-35 7.2E-40 364.8 30.5 212 853-1093 352-573 (598)
94 2cbz_A Multidrug resistance-as 100.0 2E-36 6.8E-41 330.5 18.8 195 166-414 19-217 (237)
95 3qf4_A ABC transporter, ATP-bi 100.0 5.8E-36 2E-40 368.6 21.9 214 852-1093 338-561 (587)
96 2yl4_A ATP-binding cassette SU 100.0 1.5E-35 5E-40 366.4 25.5 217 854-1094 339-566 (595)
97 4a82_A Cystic fibrosis transme 100.0 5E-36 1.7E-40 369.2 20.5 213 853-1093 337-559 (578)
98 2bbs_A Cystic fibrosis transme 100.0 2E-34 7E-39 322.7 18.7 195 855-1093 40-242 (290)
99 3g5u_A MCG1178, multidrug resi 100.0 1.4E-34 4.7E-39 384.2 18.8 260 78-414 994-1258(1284)
100 2bbs_A Cystic fibrosis transme 100.0 8.9E-34 3E-38 317.6 18.7 195 166-414 52-247 (290)
101 3bk7_A ABC transporter ATP-bin 100.0 7.7E-31 2.6E-35 321.7 21.2 191 167-414 371-563 (607)
102 1yqt_A RNAse L inhibitor; ATP- 100.0 8.5E-31 2.9E-35 318.3 20.3 191 167-414 301-493 (538)
103 3ozx_A RNAse L inhibitor; ATP 100.0 2.9E-30 9.9E-35 312.7 21.3 192 167-413 283-476 (538)
104 3j16_B RLI1P; ribosome recycli 100.0 1.5E-29 5.3E-34 309.5 20.0 192 166-414 361-559 (608)
105 2iw3_A Elongation factor 3A; a 100.0 2.6E-29 9E-34 317.3 22.5 193 855-1093 435-630 (986)
106 3ux8_A Excinuclease ABC, A sub 100.0 2E-29 6.9E-34 316.0 15.8 203 882-1093 32-293 (670)
107 1tf7_A KAIC; homohexamer, hexa 100.0 1.8E-30 6.2E-35 316.4 1.5 154 888-1084 275-443 (525)
108 3pih_A Uvrabc system protein A 99.9 2E-24 6.9E-29 273.1 23.1 110 298-414 784-902 (916)
109 2r6f_A Excinuclease ABC subuni 99.9 8E-25 2.7E-29 274.1 18.0 107 299-413 825-941 (972)
110 2vf7_A UVRA2, excinuclease ABC 99.9 1.7E-24 5.7E-29 271.7 17.3 108 298-413 709-826 (842)
111 2ygr_A Uvrabc system protein A 99.9 2.1E-24 7.3E-29 271.3 17.9 108 299-414 843-960 (993)
112 4aby_A DNA repair protein RECN 99.9 1.5E-24 5E-29 257.1 15.1 203 882-1090 49-380 (415)
113 2npi_A Protein CLP1; CLP1-PCF1 99.9 5.6E-27 1.9E-31 278.4 -7.9 196 885-1106 129-350 (460)
114 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.4E-26 4.9E-31 274.9 -6.1 186 169-413 129-337 (460)
115 4aby_A DNA repair protein RECN 99.9 2.9E-23 1E-27 245.9 17.0 236 165-407 48-381 (415)
116 3b85_A Phosphate starvation-in 99.9 5.7E-26 1.9E-30 242.4 -13.6 143 880-1068 12-159 (208)
117 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 3.2E-22 1.1E-26 232.2 15.9 81 1005-1088 277-363 (365)
118 4gp7_A Metallophosphoesterase; 99.9 2.2E-23 7.5E-28 216.1 2.7 150 886-1077 1-167 (171)
119 1e69_A Chromosome segregation 99.9 1.1E-21 3.9E-26 224.1 14.1 85 1006-1093 218-308 (322)
120 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 6E-21 2.1E-25 221.4 14.4 84 319-405 275-364 (365)
121 3b85_A Phosphate starvation-in 99.8 2.5E-23 8.7E-28 221.9 -7.9 150 163-388 11-161 (208)
122 1tq4_A IIGP1, interferon-induc 99.8 1.5E-23 5.1E-28 244.7 -11.7 170 882-1079 37-248 (413)
123 1e69_A Chromosome segregation 99.8 1.5E-20 5.3E-25 214.8 10.6 88 321-412 217-311 (322)
124 1tq4_A IIGP1, interferon-induc 99.8 1.5E-22 5.2E-27 236.2 -7.2 172 165-396 36-248 (413)
125 1ye8_A Protein THEP1, hypothet 99.8 3.2E-21 1.1E-25 200.8 3.2 148 896-1092 2-162 (178)
126 1znw_A Guanylate kinase, GMP k 99.8 6.1E-24 2.1E-28 227.3 -18.0 183 881-1085 9-205 (207)
127 2v9p_A Replication protein E1; 99.8 2.7E-23 9.3E-28 233.0 -13.8 157 166-419 114-271 (305)
128 4gp7_A Metallophosphoesterase; 99.8 1.1E-20 3.8E-25 195.7 2.2 66 323-390 83-164 (171)
129 1ye8_A Protein THEP1, hypothet 99.8 6.6E-21 2.3E-25 198.4 0.2 149 180-405 2-159 (178)
130 3b9q_A Chloroplast SRP recepto 99.8 1.1E-20 3.9E-25 212.9 -2.1 154 884-1066 90-256 (302)
131 3sop_A Neuronal-specific septi 99.8 9.6E-21 3.3E-25 210.3 -5.3 148 896-1068 4-151 (270)
132 3b9q_A Chloroplast SRP recepto 99.8 6.8E-20 2.3E-24 206.6 0.1 174 168-403 90-284 (302)
133 3sop_A Neuronal-specific septi 99.8 4.7E-20 1.6E-24 204.7 -1.3 145 180-382 4-148 (270)
134 2o5v_A DNA replication and rep 99.7 3.7E-18 1.3E-22 196.2 14.0 86 318-412 259-354 (359)
135 2v9p_A Replication protein E1; 99.7 1E-22 3.6E-27 228.2 -23.5 170 855-1107 101-271 (305)
136 2og2_A Putative signal recogni 99.7 5.7E-20 2E-24 210.8 -2.0 153 885-1066 148-313 (359)
137 3qkt_A DNA double-strand break 99.7 2E-17 6.9E-22 190.2 19.0 77 1005-1083 246-328 (339)
138 2pt7_A CAG-ALFA; ATPase, prote 99.7 1.4E-19 4.7E-24 206.9 0.4 131 883-1085 160-291 (330)
139 1z6g_A Guanylate kinase; struc 99.7 2.4E-22 8.2E-27 216.7 -21.9 177 882-1078 11-204 (218)
140 1z6g_A Guanylate kinase; struc 99.7 2.1E-21 7.1E-26 209.3 -16.9 152 165-370 10-174 (218)
141 1znw_A Guanylate kinase, GMP k 99.7 1.1E-20 3.8E-25 202.0 -12.3 180 165-399 9-202 (207)
142 2og2_A Putative signal recogni 99.7 6.5E-19 2.2E-23 202.1 1.6 173 169-403 148-341 (359)
143 2dpy_A FLII, flagellum-specifi 99.7 8.2E-20 2.8E-24 215.8 -6.9 174 881-1093 145-339 (438)
144 2dpy_A FLII, flagellum-specifi 99.7 1E-19 3.6E-24 214.9 -6.2 179 165-412 145-342 (438)
145 2o5v_A DNA replication and rep 99.7 1.3E-17 4.6E-22 191.6 10.3 78 1007-1093 265-351 (359)
146 1cr0_A DNA primase/helicase; R 99.7 4.3E-18 1.5E-22 192.2 5.2 182 883-1085 24-236 (296)
147 2pt7_A CAG-ALFA; ATPase, prote 99.7 4.6E-18 1.6E-22 194.2 2.2 133 167-403 160-292 (330)
148 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 1.5E-16 5.2E-21 159.8 11.1 76 1005-1082 55-136 (148)
149 4ad8_A DNA repair protein RECN 99.7 2.2E-16 7.5E-21 191.9 13.3 78 320-401 393-473 (517)
150 3qkt_A DNA double-strand break 99.7 9.7E-16 3.3E-20 176.2 17.6 81 319-402 244-332 (339)
151 3aez_A Pantothenate kinase; tr 99.7 2.2E-18 7.7E-23 195.1 -4.5 128 170-356 81-209 (312)
152 1cr0_A DNA primase/helicase; R 99.6 3.1E-17 1.1E-21 185.2 3.6 185 165-403 22-237 (296)
153 2o8b_B DNA mismatch repair pro 99.6 2.1E-17 7E-22 213.0 2.1 152 881-1088 769-930 (1022)
154 2ehv_A Hypothetical protein PH 99.6 1.4E-17 4.8E-22 182.5 -0.3 164 889-1083 25-207 (251)
155 3aez_A Pantothenate kinase; tr 99.6 2.4E-18 8.3E-23 194.8 -8.6 158 891-1083 87-244 (312)
156 3thx_A DNA mismatch repair pro 99.6 4.9E-16 1.7E-20 197.7 11.4 146 881-1091 649-806 (934)
157 2jeo_A Uridine-cytidine kinase 99.6 1.9E-17 6.7E-22 181.6 -1.2 155 879-1066 10-164 (245)
158 2eyu_A Twitching motility prot 99.6 7.9E-17 2.7E-21 177.9 2.2 131 883-1083 16-147 (261)
159 2jeo_A Uridine-cytidine kinase 99.6 3.4E-17 1.2E-21 179.6 -0.9 140 163-357 10-149 (245)
160 2obl_A ESCN; ATPase, hydrolase 99.6 2.6E-17 9E-22 188.8 -2.3 189 855-1093 45-250 (347)
161 4a74_A DNA repair and recombin 99.6 7.9E-17 2.7E-21 174.2 -0.9 152 889-1084 20-200 (231)
162 3thx_B DNA mismatch repair pro 99.6 9.1E-16 3.1E-20 194.7 7.9 144 880-1077 659-804 (918)
163 3thx_A DNA mismatch repair pro 99.6 1.5E-15 5.2E-20 193.2 9.1 89 322-412 720-811 (934)
164 2obl_A ESCN; ATPase, hydrolase 99.6 3E-16 1E-20 180.0 0.1 180 165-412 59-253 (347)
165 1tf7_A KAIC; homohexamer, hexa 99.6 4E-15 1.4E-19 181.1 9.7 155 172-402 275-444 (525)
166 1ewq_A DNA mismatch repair pro 99.6 3.9E-16 1.3E-20 195.4 0.4 133 881-1075 566-704 (765)
167 4a74_A DNA repair and recombin 99.5 6.8E-16 2.3E-20 166.8 2.1 154 173-402 20-201 (231)
168 1rj9_A FTSY, signal recognitio 99.5 3.3E-16 1.1E-20 176.5 -1.9 146 893-1067 101-258 (304)
169 2qnr_A Septin-2, protein NEDD5 99.5 3.1E-16 1.1E-20 177.0 -2.4 156 880-1068 10-168 (301)
170 3asz_A Uridine kinase; cytidin 99.5 2E-17 6.8E-22 176.9 -11.9 145 891-1067 3-161 (211)
171 1f2t_B RAD50 ABC-ATPase; DNA d 99.5 3.6E-14 1.2E-18 142.5 11.6 83 318-403 52-142 (148)
172 2o8b_B DNA mismatch repair pro 99.5 9.7E-16 3.3E-20 197.5 -0.1 160 165-411 769-939 (1022)
173 1wb9_A DNA mismatch repair pro 99.5 2.3E-15 8E-20 189.5 3.3 148 881-1083 595-744 (800)
174 2i3b_A HCR-ntpase, human cance 99.5 6E-17 2E-21 170.0 -9.5 158 178-407 1-169 (189)
175 3asz_A Uridine kinase; cytidin 99.5 2.2E-16 7.6E-21 168.8 -5.4 145 175-383 3-160 (211)
176 1pzn_A RAD51, DNA repair and r 99.5 9.7E-16 3.3E-20 176.5 -2.2 168 167-409 119-310 (349)
177 2qnr_A Septin-2, protein NEDD5 99.5 7.4E-16 2.5E-20 174.0 -3.2 156 164-385 10-167 (301)
178 2eyu_A Twitching motility prot 99.5 4.3E-15 1.5E-19 164.0 2.7 133 166-400 15-147 (261)
179 1pzn_A RAD51, DNA repair and r 99.5 8E-16 2.8E-20 177.2 -3.9 160 884-1088 120-305 (349)
180 1nlf_A Regulatory protein REPA 99.5 4.4E-14 1.5E-18 157.9 10.3 151 890-1068 26-182 (279)
181 2ehv_A Hypothetical protein PH 99.5 2.3E-15 7.9E-20 164.8 -0.4 168 168-399 19-206 (251)
182 1w1w_A Structural maintenance 99.5 9.1E-14 3.1E-18 165.1 12.4 75 322-399 332-410 (430)
183 2w0m_A SSO2452; RECA, SSPF, un 99.5 5.6E-15 1.9E-19 159.7 1.5 166 883-1084 11-192 (235)
184 3thx_B DNA mismatch repair pro 99.5 3.6E-14 1.2E-18 180.1 8.6 154 165-404 660-815 (918)
185 1rj9_A FTSY, signal recognitio 99.5 4.9E-15 1.7E-19 166.9 0.2 148 177-384 101-257 (304)
186 3jvv_A Twitching mobility prot 99.5 5.8E-15 2E-19 169.8 0.7 128 890-1084 119-246 (356)
187 3szr_A Interferon-induced GTP- 99.5 1.2E-15 4.3E-20 188.0 -5.5 165 181-414 48-237 (608)
188 1ewq_A DNA mismatch repair pro 99.5 1.5E-14 5.1E-19 181.1 3.6 132 165-392 566-704 (765)
189 2i3b_A HCR-ntpase, human cance 99.4 2.7E-16 9.1E-21 165.0 -10.7 159 894-1093 1-171 (189)
190 2w0m_A SSO2452; RECA, SSPF, un 99.4 7.8E-15 2.7E-19 158.6 -1.6 78 323-401 103-192 (235)
191 3szr_A Interferon-induced GTP- 99.4 1.1E-14 3.8E-19 179.6 -0.8 136 897-1068 48-197 (608)
192 1pui_A ENGB, probable GTP-bind 99.4 6E-15 2.1E-19 157.0 -3.7 180 856-1059 4-202 (210)
193 2qag_C Septin-7; cell cycle, c 99.4 7E-15 2.4E-19 172.2 -3.7 164 855-1068 11-178 (418)
194 3kta_B Chromosome segregation 99.4 5.9E-13 2E-17 137.2 10.3 84 1006-1092 63-152 (173)
195 1wb9_A DNA mismatch repair pro 99.4 5.6E-14 1.9E-18 177.0 2.2 156 165-407 595-751 (800)
196 4ad8_A DNA repair protein RECN 99.4 4E-13 1.4E-17 163.2 9.6 76 1006-1084 395-473 (517)
197 1nlf_A Regulatory protein REPA 99.4 4.4E-13 1.5E-17 149.8 8.4 153 174-387 26-183 (279)
198 1s96_A Guanylate kinase, GMP k 99.3 2.5E-14 8.6E-19 153.7 -4.8 131 889-1068 11-141 (219)
199 2qag_B Septin-6, protein NEDD5 99.3 1.1E-13 3.7E-18 161.3 0.0 171 884-1066 30-218 (427)
200 2cvh_A DNA repair and recombin 99.3 4.8E-12 1.6E-16 135.5 12.2 153 883-1084 8-185 (220)
201 3kta_B Chromosome segregation 99.3 1.1E-11 3.7E-16 127.7 13.3 90 321-414 62-158 (173)
202 1s96_A Guanylate kinase, GMP k 99.3 1.1E-13 3.7E-18 148.7 -2.0 149 173-417 11-163 (219)
203 2qag_C Septin-7; cell cycle, c 99.3 2.7E-13 9.3E-18 158.7 1.3 149 165-383 24-176 (418)
204 1zp6_A Hypothetical protein AT 99.3 1.1E-14 3.7E-19 152.9 -10.1 154 890-1065 5-159 (191)
205 2bdt_A BH3686; alpha-beta prot 99.3 4.3E-16 1.5E-20 163.5 -21.3 169 894-1093 2-179 (189)
206 3jvv_A Twitching mobility prot 99.3 3.4E-13 1.2E-17 155.1 0.8 128 174-401 119-246 (356)
207 2ewv_A Twitching motility prot 99.3 4E-13 1.4E-17 155.9 1.3 129 883-1081 127-256 (372)
208 1lw7_A Transcriptional regulat 99.3 2E-15 6.7E-20 175.5 -18.3 170 167-399 157-342 (365)
209 1pui_A ENGB, probable GTP-bind 99.3 7.6E-14 2.6E-18 148.5 -5.1 67 301-371 131-198 (210)
210 2bdt_A BH3686; alpha-beta prot 99.3 7.1E-15 2.4E-19 154.3 -13.2 169 178-412 2-182 (189)
211 2gza_A Type IV secretion syste 99.3 1.9E-12 6.5E-17 149.7 4.4 136 167-402 164-303 (361)
212 1htw_A HI0065; nucleotide-bind 99.3 1.9E-13 6.4E-18 139.0 -3.6 78 165-249 20-97 (158)
213 2gza_A Type IV secretion syste 99.2 1.2E-12 4.1E-17 151.5 2.5 137 883-1084 164-302 (361)
214 1zp6_A Hypothetical protein AT 99.2 6.6E-13 2.3E-17 139.2 0.0 141 174-368 5-146 (191)
215 2f1r_A Molybdopterin-guanine d 99.2 7.8E-14 2.7E-18 143.7 -7.6 112 179-345 3-125 (171)
216 2cvh_A DNA repair and recombin 99.2 1.2E-11 4.2E-16 132.3 8.8 77 324-401 85-185 (220)
217 3auy_A DNA double-strand break 99.2 2.8E-11 9.6E-16 140.7 11.7 77 1006-1085 279-362 (371)
218 2bbw_A Adenylate kinase 4, AK4 99.2 1.8E-13 6E-18 150.0 -6.7 157 177-371 26-198 (246)
219 1lw7_A Transcriptional regulat 99.2 3.5E-14 1.2E-18 164.9 -13.1 166 884-1082 158-342 (365)
220 1nij_A Hypothetical protein YJ 99.2 4E-15 1.4E-19 169.4 -20.8 156 895-1068 5-190 (318)
221 2bbw_A Adenylate kinase 4, AK4 99.2 4.2E-14 1.4E-18 155.0 -12.6 147 893-1057 26-200 (246)
222 1n0w_A DNA repair protein RAD5 99.2 1.3E-11 4.5E-16 134.2 6.5 151 889-1084 19-209 (243)
223 2yhs_A FTSY, cell division pro 99.2 1.6E-12 5.6E-17 153.1 -1.9 153 884-1065 283-447 (503)
224 2qag_B Septin-6, protein NEDD5 99.2 2.7E-12 9.1E-17 149.6 -0.1 172 168-380 30-214 (427)
225 2rcn_A Probable GTPase ENGC; Y 99.2 6.5E-12 2.2E-16 143.6 2.7 122 884-1022 206-328 (358)
226 1w1w_A Structural maintenance 99.1 6.1E-11 2.1E-15 140.7 9.7 76 1006-1083 332-411 (430)
227 1n0w_A DNA repair protein RAD5 99.1 2.7E-11 9.3E-16 131.7 5.9 45 173-217 19-67 (243)
228 2ewv_A Twitching motility prot 99.1 8E-12 2.8E-16 145.0 1.8 131 167-399 127-257 (372)
229 1udx_A The GTP-binding protein 99.1 1.7E-12 6E-17 151.8 -4.0 170 884-1079 147-320 (416)
230 2rcn_A Probable GTPase ENGC; Y 99.1 6.6E-12 2.3E-16 143.5 0.4 121 168-338 206-328 (358)
231 1nij_A Hypothetical protein YJ 99.1 1.4E-13 4.8E-18 156.7 -14.1 161 178-392 4-196 (318)
232 1htw_A HI0065; nucleotide-bind 99.1 2.3E-12 7.7E-17 131.0 -4.2 78 881-964 20-97 (158)
233 3e70_C DPA, signal recognition 99.1 5.6E-12 1.9E-16 143.3 -2.0 143 891-1066 126-278 (328)
234 2kjq_A DNAA-related protein; s 99.1 5.4E-11 1.9E-15 119.8 5.5 44 1023-1067 81-125 (149)
235 1odf_A YGR205W, hypothetical 3 99.1 6.9E-12 2.3E-16 140.4 -1.5 132 176-358 29-169 (290)
236 2yhs_A FTSY, cell division pro 99.1 2.2E-11 7.6E-16 143.5 2.3 81 168-251 283-372 (503)
237 3e70_C DPA, signal recognition 99.1 1.3E-11 4.5E-16 140.2 0.2 74 175-251 126-208 (328)
238 2f1r_A Molybdopterin-guanine d 99.1 8.9E-13 3.1E-17 135.8 -8.7 138 895-1057 3-163 (171)
239 2qm8_A GTPase/ATPase; G protei 99.1 4.6E-13 1.6E-17 153.4 -12.7 164 882-1055 43-260 (337)
240 3ec2_A DNA replication protein 99.0 1E-10 3.4E-15 121.5 5.1 46 1023-1068 98-144 (180)
241 2qm8_A GTPase/ATPase; G protei 99.0 1.9E-12 6.3E-17 148.4 -10.1 180 166-370 43-259 (337)
242 2oap_1 GSPE-2, type II secreti 99.0 1.4E-13 4.7E-18 165.6 -21.1 177 882-1075 248-457 (511)
243 3auy_A DNA double-strand break 99.0 8.4E-10 2.9E-14 128.2 11.3 98 298-399 244-359 (371)
244 1odf_A YGR205W, hypothetical 3 99.0 2.3E-11 7.7E-16 136.2 -3.0 131 892-1042 29-169 (290)
245 1p9r_A General secretion pathw 99.0 8E-12 2.7E-16 146.5 -7.1 137 165-346 156-314 (418)
246 3lda_A DNA repair protein RAD5 99.0 2.5E-10 8.6E-15 133.0 5.6 151 889-1084 173-363 (400)
247 2yv5_A YJEQ protein; hydrolase 99.0 1E-10 3.5E-15 131.9 2.0 123 176-336 163-300 (302)
248 2yv5_A YJEQ protein; hydrolase 99.0 3.6E-11 1.2E-15 135.6 -2.2 122 891-1021 162-301 (302)
249 2oap_1 GSPE-2, type II secreti 99.0 2.7E-12 9.1E-17 154.5 -12.3 85 165-252 247-331 (511)
250 3ec2_A DNA replication protein 98.9 6.6E-11 2.3E-15 122.9 -0.5 48 339-387 98-146 (180)
251 1udx_A The GTP-binding protein 98.9 1E-10 3.6E-15 136.8 0.5 170 168-395 147-319 (416)
252 1sxj_E Activator 1 40 kDa subu 98.9 5.2E-10 1.8E-14 128.9 5.6 136 897-1069 39-176 (354)
253 1lvg_A Guanylate kinase, GMP k 98.9 3.7E-13 1.3E-17 142.5 -20.7 57 334-400 116-173 (198)
254 3lda_A DNA repair protein RAD5 98.9 8.2E-10 2.8E-14 128.7 5.3 62 340-402 272-364 (400)
255 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 1.1E-11 3.8E-16 143.6 -10.9 168 174-410 16-209 (392)
256 1p9r_A General secretion pathw 98.9 3.1E-12 1.1E-16 149.9 -16.4 135 882-1030 157-314 (418)
257 3c8u_A Fructokinase; YP_612366 98.8 2.8E-11 9.7E-16 128.9 -8.2 121 175-351 19-140 (208)
258 2x8a_A Nuclear valosin-contain 98.8 8E-12 2.7E-16 139.0 -13.3 142 165-366 33-190 (274)
259 3c8u_A Fructokinase; YP_612366 98.8 3.3E-11 1.1E-15 128.4 -9.2 148 891-1077 19-168 (208)
260 2kjq_A DNAA-related protein; s 98.8 4E-09 1.4E-13 106.1 6.1 34 166-204 29-62 (149)
261 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 1.2E-11 4.2E-16 143.3 -14.7 170 890-1094 16-209 (392)
262 1u0l_A Probable GTPase ENGC; p 98.8 8.4E-10 2.9E-14 124.4 0.3 73 174-250 165-259 (301)
263 1lvg_A Guanylate kinase, GMP k 98.7 3.5E-12 1.2E-16 134.9 -19.9 56 1018-1082 116-172 (198)
264 1sxj_E Activator 1 40 kDa subu 98.7 7.1E-09 2.4E-13 119.4 5.6 135 181-386 39-175 (354)
265 1t9h_A YLOQ, probable GTPase E 98.7 9.1E-10 3.1E-14 123.6 -2.3 118 889-1014 168-302 (307)
266 1in4_A RUVB, holliday junction 98.7 1E-10 3.4E-15 134.1 -11.4 153 166-372 32-195 (334)
267 1sq5_A Pantothenate kinase; P- 98.7 2.9E-10 1E-14 128.7 -8.1 85 883-969 50-156 (308)
268 1t9h_A YLOQ, probable GTPase E 98.7 2.4E-09 8.4E-14 120.1 -0.5 72 173-248 168-248 (307)
269 2r6a_A DNAB helicase, replicat 98.6 2.3E-08 7.8E-13 119.3 7.5 178 883-1085 192-400 (454)
270 2x8a_A Nuclear valosin-contain 98.6 1.9E-11 6.4E-16 136.0 -18.1 141 882-1050 34-190 (274)
271 1sq5_A Pantothenate kinase; P- 98.6 2E-09 6.7E-14 121.8 -2.8 74 176-254 78-156 (308)
272 1in4_A RUVB, holliday junction 98.6 1.9E-10 6.4E-15 131.8 -12.0 149 882-1055 32-194 (334)
273 1u0l_A Probable GTPase ENGC; p 98.6 6.3E-09 2.2E-13 117.2 0.6 101 890-999 165-288 (301)
274 1vma_A Cell division protein F 98.6 1.5E-08 5E-13 114.0 3.5 112 887-1053 97-211 (306)
275 3euj_A Chromosome partition pr 98.6 9.1E-09 3.1E-13 121.9 1.7 52 166-221 18-69 (483)
276 2dr3_A UPF0273 protein PH0284; 98.6 1.3E-07 4.3E-12 102.7 10.4 68 1016-1083 117-196 (247)
277 1vma_A Cell division protein F 98.6 3.1E-08 1.1E-12 111.4 5.1 112 171-369 97-211 (306)
278 1ls1_A Signal recognition part 98.5 1.4E-07 4.8E-12 105.7 9.7 127 885-1063 91-218 (295)
279 2px0_A Flagellar biosynthesis 98.5 1.1E-07 3.7E-12 106.7 7.9 142 176-406 103-247 (296)
280 2zr9_A Protein RECA, recombina 98.5 2.5E-07 8.7E-12 106.1 10.3 78 1014-1092 126-237 (349)
281 3k1j_A LON protease, ATP-depen 98.5 5.6E-09 1.9E-13 129.1 -4.3 174 165-368 47-227 (604)
282 2px0_A Flagellar biosynthesis 98.5 7.3E-08 2.5E-12 108.1 5.0 141 892-1090 103-247 (296)
283 2dr3_A UPF0273 protein PH0284; 98.5 5E-07 1.7E-11 98.0 11.2 60 340-400 127-196 (247)
284 1oix_A RAS-related protein RAB 98.4 2.1E-08 7.2E-13 104.9 -0.5 38 1014-1053 152-189 (191)
285 3tr0_A Guanylate kinase, GMP k 98.4 1.1E-08 3.6E-13 108.2 -3.2 69 172-247 1-72 (205)
286 2ius_A DNA translocase FTSK; n 98.4 2E-08 7E-13 119.8 -2.5 166 886-1068 159-343 (512)
287 2r6a_A DNAB helicase, replicat 98.4 3.3E-07 1.1E-11 109.2 7.8 183 164-403 189-401 (454)
288 1oix_A RAS-related protein RAB 98.4 6.7E-08 2.3E-12 101.1 0.9 43 324-368 146-188 (191)
289 1iy2_A ATP-dependent metallopr 98.4 9.3E-10 3.2E-14 122.6 -14.2 76 166-248 63-142 (278)
290 1ls1_A Signal recognition part 98.4 7.7E-07 2.6E-11 99.7 9.5 117 169-368 91-208 (295)
291 3euj_A Chromosome partition pr 98.3 6.2E-08 2.1E-12 114.8 -0.4 50 882-934 18-67 (483)
292 1iy2_A ATP-dependent metallopr 98.3 5.1E-10 1.8E-14 124.7 -17.4 123 882-1028 63-190 (278)
293 1ixz_A ATP-dependent metallopr 98.3 1.5E-09 5.2E-14 119.1 -13.5 75 166-247 39-117 (254)
294 3tr0_A Guanylate kinase, GMP k 98.3 2.1E-08 7.1E-13 105.9 -4.4 60 888-953 1-63 (205)
295 2ius_A DNA translocase FTSK; n 98.3 8.7E-08 3E-12 114.3 0.1 166 170-386 159-343 (512)
296 1ixz_A ATP-dependent metallopr 98.3 7.3E-10 2.5E-14 121.6 -16.9 128 882-1035 39-171 (254)
297 3k1j_A LON protease, ATP-depen 98.3 1.2E-08 4E-13 126.2 -8.7 160 880-1052 46-227 (604)
298 2zr9_A Protein RECA, recombina 98.2 9.5E-07 3.3E-11 101.3 7.2 31 173-203 56-86 (349)
299 3hr8_A Protein RECA; alpha and 98.2 7E-07 2.4E-11 102.1 5.9 42 173-217 56-98 (356)
300 3lnc_A Guanylate kinase, GMP k 98.2 2.8E-07 9.7E-12 99.4 2.1 40 165-204 14-54 (231)
301 1qhl_A Protein (cell division 98.2 4.3E-08 1.5E-12 105.2 -5.5 59 172-234 22-91 (227)
302 2f9l_A RAB11B, member RAS onco 98.1 3.6E-07 1.2E-11 96.0 0.9 37 1016-1054 130-166 (199)
303 2ce7_A Cell division protein F 98.1 2.9E-06 1E-10 100.8 6.3 59 1010-1068 93-165 (476)
304 3lnc_A Guanylate kinase, GMP k 98.0 1.1E-06 3.6E-11 94.9 2.2 38 882-919 15-53 (231)
305 4eun_A Thermoresistant glucoki 98.0 2E-07 6.9E-12 98.3 -3.5 71 172-249 23-95 (200)
306 2qtf_A Protein HFLX, GTP-bindi 98.0 3.1E-06 1E-10 97.6 5.3 157 180-371 181-353 (364)
307 3hr8_A Protein RECA; alpha and 98.0 1.3E-06 4.5E-11 99.9 1.6 29 889-917 56-84 (356)
308 2qtf_A Protein HFLX, GTP-bindi 98.0 5.5E-07 1.9E-11 103.9 -2.0 147 896-1055 181-353 (364)
309 2f9l_A RAB11B, member RAS onco 97.9 4.5E-06 1.5E-10 87.5 4.2 37 332-370 130-166 (199)
310 2ce7_A Cell division protein F 97.9 1.3E-05 4.3E-10 95.4 8.5 61 326-386 93-165 (476)
311 4eun_A Thermoresistant glucoki 97.9 4.2E-07 1.4E-11 95.8 -4.1 55 889-949 24-80 (200)
312 1qhl_A Protein (cell division 97.9 2.4E-07 8.2E-12 99.5 -6.3 59 888-949 22-91 (227)
313 2e87_A Hypothetical protein PH 97.9 2E-05 6.7E-10 90.9 9.1 61 1006-1068 230-293 (357)
314 3kta_A Chromosome segregation 97.9 4.4E-06 1.5E-10 86.3 2.9 36 169-205 18-53 (182)
315 2xau_A PRE-mRNA-splicing facto 97.9 5.4E-06 1.8E-10 104.9 4.2 75 1006-1081 189-265 (773)
316 1zu4_A FTSY; GTPase, signal re 97.9 2.3E-06 7.9E-11 96.8 0.5 81 167-250 94-187 (320)
317 2j41_A Guanylate kinase; GMP, 97.8 5.5E-06 1.9E-10 87.2 3.1 33 173-205 1-33 (207)
318 4a1f_A DNAB helicase, replicat 97.8 6.9E-06 2.4E-10 93.3 3.6 128 883-1065 35-164 (338)
319 3a00_A Guanylate kinase, GMP k 97.8 5.7E-06 1.9E-10 86.0 1.4 28 178-205 1-28 (186)
320 3vaa_A Shikimate kinase, SK; s 97.7 8E-06 2.7E-10 85.8 2.3 40 163-202 10-49 (199)
321 4a1f_A DNAB helicase, replicat 97.7 2.6E-05 8.8E-10 88.5 6.2 139 164-400 32-170 (338)
322 2dhr_A FTSH; AAA+ protein, hex 97.7 4.5E-07 1.5E-11 108.4 -9.1 48 167-221 55-102 (499)
323 3nwj_A ATSK2; P loop, shikimat 97.6 2.6E-06 9.1E-11 92.8 -3.4 51 855-917 17-71 (250)
324 4e22_A Cytidylate kinase; P-lo 97.6 3.4E-06 1.2E-10 92.3 -2.7 62 167-234 19-95 (252)
325 3uie_A Adenylyl-sulfate kinase 97.6 2.4E-06 8.1E-11 90.0 -4.0 52 165-220 12-65 (200)
326 2dy1_A Elongation factor G; tr 97.6 1.4E-05 4.7E-10 99.6 2.1 133 888-1069 3-138 (665)
327 2xau_A PRE-mRNA-splicing facto 97.6 3.1E-05 1.1E-09 98.0 5.3 73 322-395 189-262 (773)
328 2j41_A Guanylate kinase; GMP, 97.6 1.9E-05 6.7E-10 82.9 2.5 29 890-918 2-30 (207)
329 3nwj_A ATSK2; P loop, shikimat 97.6 5.5E-06 1.9E-10 90.3 -2.2 38 166-203 33-73 (250)
330 1jjv_A Dephospho-COA kinase; P 97.5 1.4E-05 4.9E-10 84.2 0.6 71 1009-1083 61-132 (206)
331 2dhr_A FTSH; AAA+ protein, hex 97.5 5.1E-07 1.8E-11 107.9 -12.4 74 883-962 55-132 (499)
332 1ega_A Protein (GTP-binding pr 97.5 9.2E-05 3.2E-09 83.1 6.6 153 891-1079 6-170 (301)
333 1kgd_A CASK, peripheral plasma 97.5 3.7E-05 1.3E-09 79.3 3.1 38 176-215 3-40 (180)
334 3kta_A Chromosome segregation 97.5 3.6E-05 1.2E-09 79.3 2.8 32 885-917 18-49 (182)
335 1zu4_A FTSY; GTPase, signal re 97.5 1.5E-05 5.1E-10 90.2 -0.2 78 883-962 94-184 (320)
336 3vaa_A Shikimate kinase, SK; s 97.5 4E-05 1.4E-09 80.4 3.1 37 881-917 12-48 (199)
337 1fnn_A CDC6P, cell division co 97.5 0.00038 1.3E-08 80.4 11.6 44 1024-1068 124-170 (389)
338 4e22_A Cytidylate kinase; P-lo 97.4 1.5E-05 5.1E-10 87.1 -0.9 63 883-950 19-96 (252)
339 3t34_A Dynamin-related protein 97.4 0.00017 5.7E-09 83.1 7.4 57 1008-1065 155-212 (360)
340 3a00_A Guanylate kinase, GMP k 97.4 4.3E-05 1.5E-09 79.3 1.8 26 894-919 1-26 (186)
341 2vp4_A Deoxynucleoside kinase; 97.4 4.8E-05 1.7E-09 81.8 2.2 42 171-219 13-54 (230)
342 3tau_A Guanylate kinase, GMP k 97.3 8.7E-05 3E-09 78.5 3.7 29 176-204 6-34 (208)
343 2vp4_A Deoxynucleoside kinase; 97.3 5.8E-05 2E-09 81.2 2.1 41 888-934 14-54 (230)
344 1kgd_A CASK, peripheral plasma 97.3 7.1E-05 2.4E-09 77.2 2.6 38 892-930 3-40 (180)
345 3ney_A 55 kDa erythrocyte memb 97.3 6.6E-05 2.3E-09 78.5 2.2 28 176-203 17-44 (197)
346 1v5w_A DMC1, meiotic recombina 97.3 0.00071 2.4E-08 77.3 11.1 28 889-916 117-144 (343)
347 1jjv_A Dephospho-COA kinase; P 97.3 0.00021 7.3E-09 75.1 6.1 70 324-399 60-131 (206)
348 3bh0_A DNAB-like replicative h 97.3 0.00018 6.2E-09 81.2 5.8 130 883-1065 57-189 (315)
349 1rz3_A Hypothetical protein rb 97.3 5.1E-05 1.7E-09 79.8 1.1 41 175-218 19-59 (201)
350 1svm_A Large T antigen; AAA+ f 97.3 3.8E-05 1.3E-09 88.6 -0.4 44 165-214 156-199 (377)
351 1knq_A Gluconate kinase; ALFA/ 97.2 8.7E-05 3E-09 75.9 2.3 37 176-219 6-42 (175)
352 2e87_A Hypothetical protein PH 97.2 0.00059 2E-08 78.4 9.4 56 323-381 231-287 (357)
353 3b9p_A CG5977-PA, isoform A; A 97.2 0.0014 4.8E-08 72.9 12.3 27 176-202 52-78 (297)
354 2qt1_A Nicotinamide riboside k 97.2 0.00015 5E-09 76.5 3.7 31 173-203 16-46 (207)
355 3t34_A Dynamin-related protein 97.2 0.00021 7.2E-09 82.3 5.3 38 165-205 24-63 (360)
356 3bh0_A DNAB-like replicative h 97.2 0.00043 1.5E-08 78.2 7.6 38 164-201 54-91 (315)
357 3b9p_A CG5977-PA, isoform A; A 97.2 0.0014 4.7E-08 73.0 11.7 72 1009-1080 97-185 (297)
358 2z43_A DNA repair and recombin 97.2 0.00082 2.8E-08 76.1 9.7 28 889-916 102-129 (324)
359 2dy1_A Elongation factor G; tr 97.1 4.7E-05 1.6E-09 94.7 -1.1 49 172-222 3-51 (665)
360 3uie_A Adenylyl-sulfate kinase 97.1 0.00016 5.3E-09 75.9 2.6 50 882-934 13-64 (200)
361 3tau_A Guanylate kinase, GMP k 97.1 0.00018 6.2E-09 76.0 2.6 28 892-919 6-33 (208)
362 1svm_A Large T antigen; AAA+ f 97.0 7.2E-05 2.5E-09 86.3 -0.9 157 882-1061 157-326 (377)
363 3cr8_A Sulfate adenylyltranfer 97.0 0.00011 3.7E-09 89.0 0.6 42 174-218 365-408 (552)
364 2z43_A DNA repair and recombin 97.0 0.0023 7.9E-08 72.4 11.1 34 168-201 96-130 (324)
365 3tqc_A Pantothenate kinase; bi 97.0 8.9E-05 3.1E-09 83.5 -0.8 25 180-204 94-118 (321)
366 1kag_A SKI, shikimate kinase I 97.0 0.00025 8.7E-09 72.1 2.5 27 177-203 3-29 (173)
367 2q6t_A DNAB replication FORK h 97.0 0.0013 4.5E-08 77.8 9.0 168 883-1083 189-397 (444)
368 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00039 1.3E-08 69.4 3.8 30 170-200 16-45 (149)
369 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00035 1.2E-08 69.8 3.3 29 886-915 16-44 (149)
370 1v5w_A DMC1, meiotic recombina 97.0 0.003 1E-07 72.1 11.5 34 168-201 111-145 (343)
371 2z4s_A Chromosomal replication 96.9 0.0004 1.4E-08 82.1 3.9 70 1024-1094 193-264 (440)
372 1fnn_A CDC6P, cell division co 96.9 0.0033 1.1E-07 72.5 11.1 29 177-205 41-71 (389)
373 3kl4_A SRP54, signal recogniti 96.8 0.0013 4.6E-08 76.9 7.5 25 893-917 96-120 (433)
374 2qby_A CDC6 homolog 1, cell di 96.8 0.00047 1.6E-08 79.3 3.1 26 892-917 43-68 (386)
375 3ney_A 55 kDa erythrocyte memb 96.8 0.00042 1.4E-08 72.4 2.4 27 892-918 17-43 (197)
376 1knq_A Gluconate kinase; ALFA/ 96.7 0.0005 1.7E-08 70.1 2.5 36 892-933 6-41 (175)
377 1rz3_A Hypothetical protein rb 96.7 0.00022 7.7E-09 74.8 -0.2 41 891-933 19-59 (201)
378 2www_A Methylmalonic aciduria 96.7 0.00039 1.3E-08 79.7 1.4 40 176-218 72-111 (349)
379 2p67_A LAO/AO transport system 96.7 0.00015 5E-09 83.0 -2.1 48 166-216 44-91 (341)
380 4fcw_A Chaperone protein CLPB; 96.7 0.0024 8.3E-08 71.3 7.8 29 177-205 46-74 (311)
381 2z4s_A Chromosomal replication 96.7 0.00024 8.3E-09 84.0 -0.6 47 340-387 193-240 (440)
382 1ypw_A Transitional endoplasmi 96.6 0.0012 4.1E-08 83.9 5.7 30 889-918 233-262 (806)
383 2pez_A Bifunctional 3'-phospho 96.6 0.0004 1.4E-08 71.2 0.9 40 176-219 3-44 (179)
384 4eaq_A DTMP kinase, thymidylat 96.6 0.00068 2.3E-08 72.8 2.4 38 167-204 12-52 (229)
385 3tqc_A Pantothenate kinase; bi 96.6 0.00016 5.5E-09 81.4 -2.7 38 881-918 73-116 (321)
386 1cke_A CK, MSSA, protein (cyti 96.6 0.00021 7.3E-09 76.1 -1.9 34 178-214 5-41 (227)
387 1ypw_A Transitional endoplasmi 96.5 0.0013 4.3E-08 83.7 4.7 32 173-204 233-264 (806)
388 1kag_A SKI, shikimate kinase I 96.5 0.0007 2.4E-08 68.7 2.0 26 893-918 3-28 (173)
389 2qt1_A Nicotinamide riboside k 96.5 0.0009 3.1E-08 70.3 2.9 30 889-918 16-45 (207)
390 3ice_A Transcription terminati 96.5 0.00045 1.5E-08 78.6 0.4 52 854-917 132-197 (422)
391 1mky_A Probable GTP-binding pr 96.5 0.0019 6.4E-08 76.4 5.8 41 179-219 181-230 (439)
392 3cf0_A Transitional endoplasmi 96.5 0.0025 8.4E-08 71.3 6.0 29 890-918 45-73 (301)
393 3m6a_A ATP-dependent protease 96.5 0.00046 1.6E-08 83.8 -0.1 46 167-216 98-143 (543)
394 2gj8_A MNME, tRNA modification 96.4 0.0027 9.2E-08 64.5 5.6 27 176-202 2-28 (172)
395 2gj8_A MNME, tRNA modification 96.4 0.0026 8.8E-08 64.6 5.4 27 892-918 2-28 (172)
396 3qks_A DNA double-strand break 96.4 0.0014 4.7E-08 69.0 3.3 29 886-915 16-44 (203)
397 1lv7_A FTSH; alpha/beta domain 96.4 0.0075 2.6E-07 65.5 9.2 32 884-917 37-68 (257)
398 3kl4_A SRP54, signal recogniti 96.4 0.0054 1.8E-07 71.8 8.5 36 177-215 96-131 (433)
399 3cr8_A Sulfate adenylyltranfer 96.4 0.00042 1.4E-08 83.8 -1.1 41 890-932 365-407 (552)
400 2qby_A CDC6 homolog 1, cell di 96.4 0.00095 3.2E-08 76.7 1.9 29 176-204 43-71 (386)
401 1m7g_A Adenylylsulfate kinase; 96.3 0.00077 2.6E-08 71.2 0.9 41 175-218 22-64 (211)
402 3qks_A DNA double-strand break 96.3 0.0019 6.5E-08 67.9 3.8 29 170-199 16-44 (203)
403 3llm_A ATP-dependent RNA helic 96.3 0.0056 1.9E-07 65.7 7.4 66 1009-1076 162-228 (235)
404 1m2o_B GTP-binding protein SAR 96.3 0.0026 8.8E-08 65.8 4.6 34 167-201 13-46 (190)
405 1np6_A Molybdopterin-guanine d 96.2 0.0019 6.5E-08 66.1 3.0 40 179-218 7-46 (174)
406 2qor_A Guanylate kinase; phosp 96.2 0.0015 5.3E-08 68.4 2.3 30 174-203 8-37 (204)
407 1m2o_B GTP-binding protein SAR 96.2 0.0034 1.1E-07 64.9 4.7 35 882-917 12-46 (190)
408 1y63_A LMAJ004144AAA protein; 96.2 0.002 6.8E-08 66.4 3.0 32 170-201 2-33 (184)
409 3llm_A ATP-dependent RNA helic 96.1 0.00094 3.2E-08 71.8 0.2 66 326-394 163-229 (235)
410 4eaq_A DTMP kinase, thymidylat 96.1 0.0022 7.5E-08 68.8 3.0 35 884-918 13-50 (229)
411 3bgw_A DNAB-like replicative h 96.1 0.0062 2.1E-07 71.9 6.9 33 884-916 187-219 (444)
412 3lxx_A GTPase IMAP family memb 96.1 0.014 4.9E-07 62.5 9.1 42 1024-1065 111-154 (239)
413 3lxx_A GTPase IMAP family memb 96.0 0.017 5.7E-07 62.0 9.6 25 180-204 31-55 (239)
414 1f6b_A SAR1; gtpases, N-termin 96.0 0.0014 4.7E-08 68.4 0.8 35 166-201 14-48 (198)
415 2p67_A LAO/AO transport system 96.0 0.0009 3.1E-08 76.4 -0.8 36 882-917 44-79 (341)
416 1u94_A RECA protein, recombina 96.0 0.046 1.6E-06 62.4 13.5 30 173-202 58-87 (356)
417 2qag_A Septin-2, protein NEDD5 96.0 0.00073 2.5E-08 77.7 -1.6 76 165-249 30-105 (361)
418 2yvu_A Probable adenylyl-sulfa 96.0 0.0019 6.4E-08 66.6 1.6 30 176-205 11-40 (186)
419 2ffh_A Protein (FFH); SRP54, s 96.0 0.0021 7.3E-08 75.1 2.1 45 169-218 91-135 (425)
420 2i1q_A DNA repair and recombin 95.9 0.026 9E-07 63.5 11.0 28 889-916 93-120 (322)
421 3h4m_A Proteasome-activating n 95.9 0.0088 3E-07 65.9 6.8 27 892-918 49-75 (285)
422 2www_A Methylmalonic aciduria 95.9 0.0014 4.7E-08 75.0 0.1 26 892-917 72-97 (349)
423 1u94_A RECA protein, recombina 95.9 0.011 3.7E-07 67.7 7.4 28 889-916 58-85 (356)
424 3h4m_A Proteasome-activating n 95.9 0.013 4.4E-07 64.6 7.9 28 176-203 49-76 (285)
425 2ohf_A Protein OLA1, GTP-bindi 95.9 0.0034 1.2E-07 72.5 3.2 31 171-201 15-45 (396)
426 3m6a_A ATP-dependent protease 95.8 0.0012 4.3E-08 80.0 -0.5 49 882-933 97-145 (543)
427 2b8t_A Thymidine kinase; deoxy 95.8 0.011 3.8E-07 62.8 7.0 53 1025-1082 89-150 (223)
428 1mky_A Probable GTP-binding pr 95.8 0.0052 1.8E-07 72.5 4.7 39 895-933 181-229 (439)
429 2wji_A Ferrous iron transport 95.8 0.0082 2.8E-07 60.2 5.4 24 180-203 5-28 (165)
430 2pez_A Bifunctional 3'-phospho 95.8 0.0035 1.2E-07 64.1 2.7 26 892-917 3-28 (179)
431 2qag_A Septin-2, protein NEDD5 95.8 0.00039 1.3E-08 80.0 -5.1 31 882-918 31-61 (361)
432 2p5t_B PEZT; postsegregational 95.7 0.0022 7.4E-08 69.8 0.9 41 174-219 28-68 (253)
433 1l8q_A Chromosomal replication 95.7 0.014 4.9E-07 65.7 7.6 105 892-1067 35-141 (324)
434 2qor_A Guanylate kinase; phosp 95.7 0.0037 1.3E-07 65.5 2.6 28 891-918 9-36 (204)
435 1cke_A CK, MSSA, protein (cyti 95.7 0.0037 1.2E-07 66.4 2.5 56 894-949 5-73 (227)
436 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0011 3.6E-08 75.2 -2.2 37 167-203 11-49 (359)
437 1f6b_A SAR1; gtpases, N-termin 95.6 0.0023 8E-08 66.6 0.5 35 882-917 14-48 (198)
438 3ice_A Transcription terminati 95.6 0.0032 1.1E-07 71.7 1.6 33 170-202 166-198 (422)
439 1j8m_F SRP54, signal recogniti 95.6 0.0016 5.6E-08 72.6 -0.9 46 169-218 89-135 (297)
440 2if2_A Dephospho-COA kinase; a 95.6 0.0049 1.7E-07 64.3 2.8 21 180-200 3-23 (204)
441 1y63_A LMAJ004144AAA protein; 95.5 0.0051 1.7E-07 63.3 2.8 32 886-917 2-33 (184)
442 2wjg_A FEOB, ferrous iron tran 95.5 0.0074 2.5E-07 61.6 3.9 22 180-201 9-30 (188)
443 3cm0_A Adenylate kinase; ATP-b 95.5 0.0066 2.2E-07 62.2 3.4 27 176-202 2-28 (186)
444 1ega_A Protein (GTP-binding pr 95.4 0.0051 1.7E-07 68.8 2.6 25 178-202 8-32 (301)
445 3d8b_A Fidgetin-like protein 1 95.4 0.063 2.1E-06 61.4 11.7 27 176-202 115-141 (357)
446 1lv7_A FTSH; alpha/beta domain 95.4 0.0059 2E-07 66.3 2.9 45 167-218 36-80 (257)
447 2wjg_A FEOB, ferrous iron tran 95.4 0.013 4.4E-07 59.8 5.4 22 896-917 9-30 (188)
448 1qhx_A CPT, protein (chloramph 95.4 0.0064 2.2E-07 61.8 2.9 26 178-203 3-28 (178)
449 2v1u_A Cell division control p 95.4 0.02 6.8E-07 65.6 7.4 26 892-917 42-67 (387)
450 2q6t_A DNAB replication FORK h 95.3 0.037 1.3E-06 65.3 9.7 38 165-202 187-224 (444)
451 3t61_A Gluconokinase; PSI-biol 95.3 0.0064 2.2E-07 63.4 2.5 25 178-202 18-42 (202)
452 2wji_A Ferrous iron transport 95.3 0.0079 2.7E-07 60.4 3.1 23 896-918 5-27 (165)
453 2if2_A Dephospho-COA kinase; a 95.3 0.006 2.1E-07 63.6 2.2 21 896-916 3-23 (204)
454 3d8b_A Fidgetin-like protein 1 95.3 0.058 2E-06 61.7 10.6 26 892-917 115-140 (357)
455 3kb2_A SPBC2 prophage-derived 95.2 0.0089 3E-07 60.2 3.2 24 180-203 3-26 (173)
456 2rhm_A Putative kinase; P-loop 95.0 0.0098 3.4E-07 61.2 3.0 27 176-202 3-29 (193)
457 1np6_A Molybdopterin-guanine d 95.0 0.0093 3.2E-07 61.0 2.7 38 895-932 7-45 (174)
458 2ohf_A Protein OLA1, GTP-bindi 95.0 0.0084 2.9E-07 69.2 2.7 43 889-931 17-68 (396)
459 1kht_A Adenylate kinase; phosp 95.0 0.012 4.1E-07 60.3 3.4 26 178-203 3-28 (192)
460 1sxj_C Activator 1 40 kDa subu 94.9 0.0028 9.7E-08 72.1 -1.7 41 165-205 31-73 (340)
461 1gvn_B Zeta; postsegregational 94.9 0.011 3.8E-07 65.5 3.1 36 176-216 31-66 (287)
462 3r20_A Cytidylate kinase; stru 94.9 0.013 4.3E-07 62.8 3.3 24 179-202 10-33 (233)
463 2yvu_A Probable adenylyl-sulfa 94.8 0.011 3.7E-07 60.7 2.5 28 890-917 9-36 (186)
464 3cf0_A Transitional endoplasmi 94.8 0.012 4.1E-07 65.7 3.0 30 174-203 45-74 (301)
465 2ga8_A Hypothetical 39.9 kDa p 94.8 0.0028 9.7E-08 71.7 -2.1 35 883-917 11-47 (359)
466 2zej_A Dardarin, leucine-rich 94.7 0.014 4.6E-07 59.8 3.1 23 180-202 4-26 (184)
467 2v54_A DTMP kinase, thymidylat 94.7 0.015 5.2E-07 60.4 3.5 26 177-202 3-28 (204)
468 3trf_A Shikimate kinase, SK; a 94.7 0.015 5.2E-07 59.4 3.4 26 177-202 4-29 (185)
469 2ze6_A Isopentenyl transferase 94.7 0.014 4.9E-07 63.4 3.3 25 179-203 2-26 (253)
470 1q3t_A Cytidylate kinase; nucl 94.7 0.014 4.8E-07 62.6 3.2 29 174-202 12-40 (236)
471 3lw7_A Adenylate kinase relate 94.7 0.015 5.2E-07 58.4 3.3 19 180-198 3-21 (179)
472 2zej_A Dardarin, leucine-rich 94.7 0.015 5.1E-07 59.5 3.1 22 896-917 4-25 (184)
473 1q57_A DNA primase/helicase; d 94.6 0.16 5.6E-06 60.7 12.8 33 884-916 232-264 (503)
474 3bgw_A DNAB-like replicative h 94.6 0.063 2.1E-06 63.3 8.8 37 165-201 184-220 (444)
475 1xjc_A MOBB protein homolog; s 94.6 0.013 4.3E-07 59.6 2.4 26 179-204 5-30 (169)
476 2plr_A DTMP kinase, probable t 94.6 0.018 6.3E-07 60.0 3.8 28 177-204 3-30 (213)
477 1ex7_A Guanylate kinase; subst 94.6 0.014 4.9E-07 60.2 2.7 24 180-203 3-26 (186)
478 1ly1_A Polynucleotide kinase; 94.6 0.018 6.2E-07 58.3 3.5 22 179-200 3-24 (181)
479 1m7g_A Adenylylsulfate kinase; 94.5 0.014 4.8E-07 61.4 2.7 28 891-918 22-49 (211)
480 3cm0_A Adenylate kinase; ATP-b 94.5 0.015 5.3E-07 59.4 2.9 25 892-916 2-26 (186)
481 2ffh_A Protein (FFH); SRP54, s 94.5 0.0062 2.1E-07 71.1 -0.2 46 885-934 91-136 (425)
482 3t61_A Gluconokinase; PSI-biol 94.5 0.014 4.8E-07 60.8 2.5 24 894-917 18-41 (202)
483 3iij_A Coilin-interacting nucl 94.5 0.016 5.4E-07 59.1 2.9 26 177-202 10-35 (180)
484 1xwi_A SKD1 protein; VPS4B, AA 94.4 0.26 8.8E-06 55.4 13.1 119 892-1081 43-176 (322)
485 1vht_A Dephospho-COA kinase; s 94.3 0.02 6.9E-07 60.3 3.4 24 177-200 3-26 (218)
486 2c95_A Adenylate kinase 1; tra 94.3 0.019 6.4E-07 59.2 3.1 27 176-202 7-33 (196)
487 2wwf_A Thymidilate kinase, put 94.3 0.02 6.9E-07 59.8 3.3 27 176-202 8-34 (212)
488 2jaq_A Deoxyguanosine kinase; 94.3 0.021 7.3E-07 59.1 3.3 24 180-203 2-25 (205)
489 1xp8_A RECA protein, recombina 94.2 0.11 3.6E-06 59.6 9.1 120 891-1065 71-209 (366)
490 1via_A Shikimate kinase; struc 94.2 0.022 7.5E-07 57.8 3.1 23 180-202 6-28 (175)
491 1tev_A UMP-CMP kinase; ploop, 94.2 0.026 8.8E-07 57.9 3.6 26 177-202 2-27 (196)
492 3cmw_A Protein RECA, recombina 94.1 0.05 1.7E-06 73.2 7.1 30 174-203 728-757 (1706)
493 3kb2_A SPBC2 prophage-derived 94.1 0.021 7.2E-07 57.4 2.9 22 896-917 3-24 (173)
494 1aky_A Adenylate kinase; ATP:A 94.1 0.025 8.5E-07 59.8 3.6 27 176-202 2-28 (220)
495 1gtv_A TMK, thymidylate kinase 94.1 0.0083 2.8E-07 62.9 -0.2 25 180-204 2-26 (214)
496 1nn5_A Similar to deoxythymidy 94.1 0.023 7.9E-07 59.4 3.2 29 175-203 6-34 (215)
497 1qhx_A CPT, protein (chloramph 94.1 0.024 8.1E-07 57.5 3.1 25 894-918 3-27 (178)
498 1ex7_A Guanylate kinase; subst 94.1 0.021 7.2E-07 58.9 2.7 21 897-917 4-24 (186)
499 1q3t_A Cytidylate kinase; nucl 94.0 0.024 8.1E-07 60.8 3.1 26 891-916 13-38 (236)
500 2bwj_A Adenylate kinase 5; pho 94.0 0.0097 3.3E-07 61.5 -0.0 27 176-202 10-36 (199)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7.2e-76 Score=780.98 Aligned_cols=216 Identities=26% Similarity=0.377 Sum_probs=182.8
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1156)
.+.++|+||+|+|+.. ++.++|+||||+|+|||++||+||||||||||+++|.|... +.+|+|.|||.
T Consensus 1074 ~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~ 1141 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGS 1141 (1321)
T ss_dssp CCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTE
T ss_pred CCeEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCE
Confidence 4579999999999642 12458999999999999999999999999999999999876 56899999999
Q ss_pred cCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-------cccccCC
Q 001108 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGL 1002 (1156)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~ 1002 (1156)
+++. ..+++.++||||++.++. -|++|||.|+. .+.+.+ ++.++++++..++.+. .|+.+|.
T Consensus 1142 di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge 1213 (1321)
T 4f4c_A 1142 EIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---DPSSVT----MAQVEEAARLANIHNFIAELPEGFETRVGD 1213 (1321)
T ss_dssp ETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---CTTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETT
T ss_pred EhhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccC---CCCCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecC
Confidence 8764 457788999999999886 59999998752 112222 3457888998887654 4556665
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
.| .+||||||||+||||||+++|+||+||||||+||+++.+.|++.|+++. +|+|||+++|+++. ...||+|++|+
T Consensus 1214 ~G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld 1289 (1321)
T 4f4c_A 1214 RG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVS 1289 (1321)
T ss_dssp TS-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEES
T ss_pred CC-cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEE
Confidence 43 5799999999999999999999999999999999999999999999875 58999999999874 57899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 1290 ~-G~IvE~Gth 1299 (1321)
T 4f4c_A 1290 N-GTIIEKGTH 1299 (1321)
T ss_dssp S-SSEEEEECH
T ss_pred C-CEEEEECCH
Confidence 6 799999984
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=7.8e-71 Score=731.01 Aligned_cols=216 Identities=25% Similarity=0.357 Sum_probs=176.1
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1156)
...++++||++.|+..+ +..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 1028 ~g~i~~~~v~~~y~~~~----------~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRP----------SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGK 1095 (1284)
T ss_dssp SCCEEEEEEEBCCSCGG----------GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSS
T ss_pred CCcEEEEEEEEECCCCC----------CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCE
Confidence 35699999999986321 2358999999999999999999999999999999999876 56899999999
Q ss_pred cCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-------cccccCC
Q 001108 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGL 1002 (1156)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~ 1002 (1156)
++.. ...++.+|||||++.+++ .||+||+.++... ...+. +.++++++..++.+. .|+.+|.
T Consensus 1096 ~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge 1167 (1284)
T 3g5u_A 1096 EIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RVVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGD 1167 (1284)
T ss_dssp CTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CCCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred EcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC---CCCCH----HHHHHHHHHhCcHHHHHhCccccccccCC
Confidence 8754 345677999999997764 7999999875321 11222 335556666665443 3445555
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
. +..|||||||||+|||||+++|+||+|||||||||+.+++.|++.|++. .+|+|||+++|+++. + ..||++++|+
T Consensus 1168 ~-G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~ 1243 (1284)
T 3g5u_A 1168 K-GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQ 1243 (1284)
T ss_dssp T-SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEE
T ss_pred C-CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 4 4579999999999999999999999999999999999999999999886 459999999999974 4 6699999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 1244 ~-G~i~~~g~~ 1253 (1284)
T 3g5u_A 1244 N-GKVKEHGTH 1253 (1284)
T ss_dssp T-BEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 6 799999984
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.2e-57 Score=558.98 Aligned_cols=201 Identities=23% Similarity=0.291 Sum_probs=166.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ + ..|+++||+|++||++||+||||||||||+++|+|... +.+|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC-----
T ss_pred EEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE-----
Confidence 477888876653 1 25899999999999999999999999999999999876 45687765
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.+.+||++|+....+.+||.|++.+...... ...+.++++++.+++.+..++.+ ..|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 2358999999887788999998865311110 11345788999999988887764 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEecC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 1092 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~~d~v~~l~~-Gg~~~~~g~ 1092 (1156)
||+||+||+.+|+||||||||+|||+.++..++++|++++ +.|.|||+++||+. .+...||++++|+. .|+++..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCC
Confidence 9999999999999999999999999999999999999986 46999999999986 47788999999973 266777887
Q ss_pred CC
Q 001108 1093 LG 1094 (1156)
Q Consensus 1093 ~~ 1094 (1156)
..
T Consensus 558 p~ 559 (607)
T 3bk7_A 558 PM 559 (607)
T ss_dssp CE
T ss_pred HH
Confidence 63
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.3e-57 Score=553.73 Aligned_cols=201 Identities=24% Similarity=0.290 Sum_probs=165.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ + ..|+++||+|++||++||+||||||||||+++|+|... +..|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC-----
T ss_pred EEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE-----
Confidence 477888876653 1 36899999999999999999999999999999999865 45687764
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
...+||++|+....+.+||.|++......... ..+.++++++.+++.+..++.+ ..|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCCC-------HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHH
Confidence 23589999998877889999987653111110 1245778899999987777664 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEecC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 1092 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~~d~v~~l~~-Gg~~~~~g~ 1092 (1156)
||+||++|+.+|++|||||||+|||+.++..|+++|++++ +.|.|||++|||++ ++...||++++|++ .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 9999999999999999999999999999999999999986 45999999999987 47789999999984 267778888
Q ss_pred CC
Q 001108 1093 LG 1094 (1156)
Q Consensus 1093 ~~ 1094 (1156)
..
T Consensus 488 ~~ 489 (538)
T 1yqt_A 488 PM 489 (538)
T ss_dssp CE
T ss_pred HH
Confidence 63
No 5
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.1e-56 Score=561.87 Aligned_cols=183 Identities=22% Similarity=0.282 Sum_probs=147.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCC-CCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV~ 244 (1156)
.+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+... ...++|++|+. .+++.+||.
T Consensus 449 ~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv~ 514 (986)
T 2iw3_A 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSVL 514 (986)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBHH
T ss_pred EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccCCcHH
Confidence 59999999999999999999999999999999995 222 3333211 12478999974 678899999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-ccccccccccccCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIRG 323 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~~ 323 (1156)
|++.+ ...+ . ...++.+++.+||+ +..+..++ .
T Consensus 515 e~l~~--~~~~--~-------------------------------------~~~v~~~L~~lgL~~~~~~~~~~-----~ 548 (986)
T 2iw3_A 515 DFVFE--SGVG--T-------------------------------------KEAIKDKLIEFGFTDEMIAMPIS-----A 548 (986)
T ss_dssp HHHHT--TCSS--C-------------------------------------HHHHHHHHHHTTCCHHHHHSBGG-----G
T ss_pred HHHHH--hhcC--H-------------------------------------HHHHHHHHHHcCCChhhhcCCcc-----c
Confidence 99975 1111 0 01356678899995 55665554 5
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|++ . +++||.++|+..++.++||+|++|.+|++
T Consensus 549 LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~-g~tvIivSHdl~~l~~~adrii~L~~G~i 623 (986)
T 2iw3_A 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----C-GITSITISHDSVFLDNVCEYIINYEGLKL 623 (986)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----S-CSEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----C-CCEEEEEECCHHHHHHhCCEEEEEECCee
Confidence 999999999999999999999999999999999999999999986 3 44556688999999999999999999999
Q ss_pred E-EEcChhHHH
Q 001108 404 V-YQGPRELVL 413 (1156)
Q Consensus 404 v-~~G~~~~~~ 413 (1156)
+ +.|+++++.
T Consensus 624 v~~~G~~~e~~ 634 (986)
T 2iw3_A 624 RKYKGNFTEFV 634 (986)
T ss_dssp EEEESCHHHHH
T ss_pred ecCCCCHHHHH
Confidence 6 789887653
No 6
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.8e-56 Score=541.95 Aligned_cols=215 Identities=20% Similarity=0.226 Sum_probs=168.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.+++++++..+. + ..|+++|++|++||++||+||||||||||+++|+|... +.+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC--
T ss_pred eEEEcceEEEEC-------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCe--
Confidence 466777776553 1 35788899999999999999999999999999999876 45799987652
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.++|++|+......+||+|++.+..... .. . ....++++++.++|.+..++.+ ..|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASKDA--LS-T---SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCSST--TC-T---TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred -------eeEeechhcccccCCCHHHHHHHhhhhc--cc-h---hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 4799999877777899999998742111 00 1 1234678899999988887764 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC-cEEEEecC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGP 1092 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~G-g~~~~~g~ 1092 (1156)
||+|||||+.+|+||||||||+|||+.++..|+++|+++++ .|.|||++|||++ ++...||++++|+.+ |.....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCC
Confidence 99999999999999999999999999999999999999975 5999999999987 477889999999842 34444554
Q ss_pred CCCcchhHHHHHHh
Q 001108 1093 LGRHSCHLISYFEA 1106 (1156)
Q Consensus 1093 ~~~~~~~~~~~f~~ 1106 (1156)
...-...+..|+..
T Consensus 472 ~~~~~~~~~~~~~~ 485 (538)
T 3ozx_A 472 PVTLKTGMNEFLRE 485 (538)
T ss_dssp CEEHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh
Confidence 42222233444443
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.1e-55 Score=551.38 Aligned_cols=213 Identities=23% Similarity=0.288 Sum_probs=135.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHH---------------------HHHhcCCCCCCC----ceeEEEEcCccC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLL---------------------LALAGKLDPTLK----VSGTVTYNGHDM 219 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL---------------------~~L~G~~~~~~~----~~G~V~~nG~~~ 219 (1156)
.++|+|||++|++|++++|+||||||||||| +++.|...|+.. ..|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 888888777521 256777777654
Q ss_pred CCcCccceEEEEcCCCC-------------------CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCC
Q 001108 220 DEFVPQRTAAYISQHDN-------------------HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280 (1156)
Q Consensus 220 ~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 280 (1156)
... +++.++||+|... .++.+||+||+.+.......... .+..+.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~----~~~~~~----------- 174 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKE----AQIARL----------- 174 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC-------------------------------------
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhh----hHHHHH-----------
Confidence 332 2345566665432 24678999999874322100000 000000
Q ss_pred hHHHHHHHhhhhhhhHHHHHHHHHHcCCccc-ccccccccccCCCChhHHHHHHHHHHHhcCCc--cceeecCCCCCCHH
Q 001108 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSS 357 (1156)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~--vllLDEptsgLD~~ 357 (1156)
...+.... -.+++.+||.+. .|..+ ..|||||||||+|||||+.+|+ +|||||||+|||+.
T Consensus 175 ----------~~~~~~~~-~~~l~~~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 175 ----------ILREIRDR-LGFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp --------------CHHH-HHHHHHTTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred ----------HHHHHHHH-HHHHHHcCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHH
Confidence 00000111 235888999764 45544 4699999999999999999988 99999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE------cCCeEEEEcChhHH
Q 001108 358 TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELV 412 (1156)
Q Consensus 358 ~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL------~~G~iv~~G~~~~~ 412 (1156)
++.++++.|+++.. . +.+||.++|+...+ ..||+|++| ++|++++.|+++++
T Consensus 239 ~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 239 DNDRLIATLKSMRD-L-GNTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp GHHHHHHHHHHHHH-T-TCEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHHH-c-CCEEEEEeCCHHHH-hhCCEEEEecccccccCCEEEEecCHHHH
Confidence 99999999999854 3 45566688887754 569999999 89999999998765
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-54 Score=531.38 Aligned_cols=188 Identities=19% Similarity=0.183 Sum_probs=154.7
Q ss_pred EEeeeeeEEEeCC-----eEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCC
Q 001108 882 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFV 956 (1156)
Q Consensus 882 ~~L~~vs~~i~~G-----e~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~ 956 (1156)
.+++++||++++| |++||+||||||||||+++|+|... +.+|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCcC------cc----CCcEEEecccccccCCc
Confidence 4788999999888 7899999999999999999999876 335541 11 23589999987766678
Q ss_pred CHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001108 957 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1156)
Q Consensus 957 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTs 1036 (1156)
||+|++... .+. ... ....++++++.++|.+..+..+ ..|||||||||+|||||+.+|+||||||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--ccc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987532 221 111 1245678999999998888774 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecC-cEEEEecCCC
Q 001108 1037 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGPLG 1094 (1156)
Q Consensus 1037 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G-g~~~~~g~~~ 1094 (1156)
|||+.++..++++|+++. +.|.|||++|||++ ++...|||+++|+.+ |+++..|++.
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~ 555 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPE 555 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChH
Confidence 999999999999999986 45999999999987 477889999999852 7888888864
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.1e-42 Score=397.63 Aligned_cols=218 Identities=22% Similarity=0.277 Sum_probs=190.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|+.. .+...+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 58999999988632 123579999999999999999999999999999999999876 5689999999886
Q ss_pred Chh------cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001108 935 KQE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 935 ~~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 1008 (1156)
... ..++.+|||+|++.+++.+||+||+.|+...+. .+.++.+++++++++.++|.+..++.+ .+|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCCh-----hhC
Confidence 431 235679999999999999999999999876542 345667788999999999998888764 579
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
||||||||+|||||+.+|+||||||||||||+.++..|+++|+++.+ .|+|||++||+++ .+.+.||++++|++ |++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999975 4999999999987 47788999999986 799
Q ss_pred EEecCC
Q 001108 1088 IYVGPL 1093 (1156)
Q Consensus 1088 ~~~g~~ 1093 (1156)
++.|+.
T Consensus 243 v~~g~~ 248 (366)
T 3tui_C 243 IEQDTV 248 (366)
T ss_dssp EECCBH
T ss_pred EEEcCH
Confidence 999974
No 10
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.4e-42 Score=375.63 Aligned_cols=219 Identities=23% Similarity=0.344 Sum_probs=184.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|+... ....+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~~---------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCCC---------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 57899998885211 12469999999999999999999999999999999999876 56899999998764
Q ss_pred hhc-------ccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-ccccCCCCCCC
Q 001108 936 QET-------FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSG 1007 (1156)
Q Consensus 936 ~~~-------~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-~~~~~~~~~~~ 1007 (1156)
... .++.+||++|++.+++.+||+||+.++...+.......++..+.+.++++.++|.+.. +.. +.+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 311 1345999999999999999999999986654322344556677889999999998743 555 357
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ +.+.||++++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 4588999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
++..++.
T Consensus 223 i~~~~~~ 229 (235)
T 3tif_A 223 VEREEKL 229 (235)
T ss_dssp EEEEEEC
T ss_pred EEEEcCh
Confidence 8888765
No 11
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=5e-42 Score=392.27 Aligned_cols=223 Identities=22% Similarity=0.325 Sum_probs=191.9
Q ss_pred eEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHH
Q 001108 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLA 197 (1156)
Q Consensus 118 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~ 197 (1156)
-++++||++.+.. ++....+|+|||++|++|++++|+|||||||||||++
T Consensus 24 mi~v~~ls~~y~~------------------------------~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~ 73 (366)
T 3tui_C 24 MIKLSNITKVFHQ------------------------------GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRC 73 (366)
T ss_dssp CEEEEEEEEEEEC------------------------------SSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHH
T ss_pred eEEEEeEEEEeCC------------------------------CCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHH
Confidence 4899999998842 1133569999999999999999999999999999999
Q ss_pred HhcCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHH
Q 001108 198 LAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271 (1156)
Q Consensus 198 L~G~~~~~~~~~G~V~~nG~~~~~~~~------~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~ 271 (1156)
|+|+++|+ +|+|.++|.++..... ++.+|||+|++.+++.+||+||+.|+.+..+...
T Consensus 74 i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~------------- 137 (366)
T 3tui_C 74 VNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK------------- 137 (366)
T ss_dssp HHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCH-------------
T ss_pred HhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCH-------------
Confidence 99999998 9999999999876542 3579999999999999999999999876543211
Q ss_pred hcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCC
Q 001108 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIS 351 (1156)
Q Consensus 272 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEpt 351 (1156)
.+...+++++|+.+||.+.++..+ ..|||||||||+|||||+.+|++|||||||
T Consensus 138 ---------------------~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqkQRVaIArAL~~~P~lLLlDEPT 191 (366)
T 3tui_C 138 ---------------------DEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDQAT 191 (366)
T ss_dssp ---------------------HHHHHHHHHHHHHHTCGGGTTCCT-----TTSCHHHHHHHHHHHHTTTCCSEEEEESTT
T ss_pred ---------------------HHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 112235678899999998777655 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHH
Q 001108 352 TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 352 sgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
||||+.++..|++.|+++.+.. +.+|+.++|+..++.++||+|++|++|++++.|+++++.
T Consensus 192 s~LD~~~~~~i~~lL~~l~~~~-g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 192 SALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999986543 455666889999999999999999999999999999875
No 12
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.3e-42 Score=382.95 Aligned_cols=215 Identities=25% Similarity=0.384 Sum_probs=185.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|+ ++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 488999999884 22459999999999999999999999999999999999876 5689999999887
Q ss_pred C--h---hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001108 935 K--Q---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 935 ~--~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 1008 (1156)
. . ..+++.+|||+|++. .+..+||+||+.|+...+ ..+.++.+++++++++.++|.++.+..+ .+|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 3 2 234567999999863 344789999999987543 2345666778999999999998888774 469
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
||||||||+|||||+.+|+||||||||+|||+.++..++++|+++. ++|+|||++||+++ .+.+.||++++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999998 47788999999986 799
Q ss_pred EEecCC
Q 001108 1088 IYVGPL 1093 (1156)
Q Consensus 1088 ~~~g~~ 1093 (1156)
++.|+.
T Consensus 223 ~~~g~~ 228 (275)
T 3gfo_A 223 ILQGNP 228 (275)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999985
No 13
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=5.9e-42 Score=394.18 Aligned_cols=214 Identities=25% Similarity=0.374 Sum_probs=190.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|. +..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 378899998873 3579999999999999999999999999999999999877 5689999999886
Q ss_pred Chh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
... ..++.+|||+|++.++|.+||+||+.|+...+. .+.++.+++++++++.++|.++.++.+ .+||||||
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqr 139 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHH
Confidence 532 234679999999999999999999999876652 355667788999999999999888774 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|+||||||||||||+..+..+++.|+++.++ |.|||++|||++ ++..+||++++|++ |+++..|+
T Consensus 140 QRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~ 217 (381)
T 3rlf_A 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (381)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeC
Confidence 9999999999999999999999999999999999999999755 999999999986 58889999999986 79999997
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 218 ~ 218 (381)
T 3rlf_A 218 P 218 (381)
T ss_dssp H
T ss_pred H
Confidence 5
No 14
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=8e-42 Score=370.13 Aligned_cols=212 Identities=22% Similarity=0.280 Sum_probs=182.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|+ ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 378899998873 3569999999999999999999999999999999999876 5689999999876
Q ss_pred Chh------cc-cceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001108 935 KQE------TF-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1156)
Q Consensus 935 ~~~------~~-~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~ 1007 (1156)
... .+ ++.+||++|++.+++.+||+||+.|+...+. ...++.++.++++++.++|.+..+..+ .+
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 140 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKP-----YE 140 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 421 12 2569999999999999999999998765432 233445567899999999998877764 46
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++. + +.||++++|++ |++
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~-~~~d~v~~l~~-G~i 217 (224)
T 2pcj_A 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL-A-ELTHRTLEMKD-GKV 217 (224)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-H-TTSSEEEEEET-TEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-H-HhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999998779999999999753 4 88999999986 688
Q ss_pred EEecC
Q 001108 1088 IYVGP 1092 (1156)
Q Consensus 1088 ~~~g~ 1092 (1156)
++.|+
T Consensus 218 ~~~g~ 222 (224)
T 2pcj_A 218 VGEIT 222 (224)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 88875
No 15
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1e-41 Score=376.87 Aligned_cols=214 Identities=25% Similarity=0.348 Sum_probs=184.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|. ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEES
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 388999998873 3569999999999999999999999999999999999876 5689999999876
Q ss_pred C--h---hcccceEEEeccCCCCCCCCCHHHHHHHHH-HhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001108 935 K--Q---ETFARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 935 ~--~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 1008 (1156)
. . ..+++.+|||+|++.+++.+||+||+.|+. ..+ ....++.++.++++++.++|.+..++.+ .+|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhC
Confidence 3 1 123567999999999999999999999864 322 1233445667899999999998877764 469
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++ |+++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~ 238 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYII 238 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999986 46778999999986 6888
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
+.|+.
T Consensus 239 ~~g~~ 243 (263)
T 2olj_A 239 EEGKP 243 (263)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88874
No 16
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=4.4e-42 Score=392.80 Aligned_cols=214 Identities=25% Similarity=0.401 Sum_probs=187.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|. +..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 378899998873 3579999999999999999999999999999999999877 5689999999875
Q ss_pred ----Ch-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 935 ----KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 935 ----~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
.. ...++.+|||+|++.++|.+||+||+.|+...+. ...++.+++++++++.++|.++.++.+ .+||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 21 2345679999999999999999999999765432 234556778999999999999888874 4699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
|||||||+|||||+.+|++|||||||||||+..+..+++.|+++. +.|.|||++|||++ ++..+||++++|++ |+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999887764 56999999999986 58889999999986 7999
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
..|+.
T Consensus 219 ~~g~~ 223 (359)
T 3fvq_A 219 QTASP 223 (359)
T ss_dssp EEECH
T ss_pred EEeCH
Confidence 99985
No 17
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-41 Score=377.27 Aligned_cols=214 Identities=20% Similarity=0.254 Sum_probs=184.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|. ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 6 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 378999998873 3569999999999999999999999999999999999876 5689999999876
Q ss_pred Ch----------------hcccceEEEeccCCCCCCCCCHHHHHHHHH-HhhCCCCCChHHHHHHHHHHHHHcCCCcc-c
Q 001108 935 KQ----------------ETFARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPL-R 996 (1156)
Q Consensus 935 ~~----------------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~ 996 (1156)
.. ..+++.+|||+|++.+++.+||+||+.|+. ..+ ..+.++.++.++++++.++|.+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhh
Confidence 41 123457999999999999999999999864 322 22334456678999999999887 7
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 001108 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1076 (1156)
Q Consensus 997 ~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d 1076 (1156)
++.+ .+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||
T Consensus 148 ~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d 221 (262)
T 1b0u_A 148 GKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 221 (262)
T ss_dssp TSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCS
T ss_pred cCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCC
Confidence 7664 469999999999999999999999999999999999999999999999877999999999986 4677899
Q ss_pred eEEEEecCcEEEEecCC
Q 001108 1077 ELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1077 ~v~~l~~Gg~~~~~g~~ 1093 (1156)
++++|++ |+++..|+.
T Consensus 222 ~v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 222 HVIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp EEEEEET-TEEEEEECH
T ss_pred EEEEEEC-CEEEEeCCH
Confidence 9999986 689988874
No 18
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.9e-41 Score=390.01 Aligned_cols=207 Identities=24% Similarity=0.355 Sum_probs=181.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1156)
..+|+|||+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.+|||+|+..++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 35999999999999999999999999999999999999998 9999999999876554 3679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+|||.|+.+..+... .+.+.+++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~p-----~~ 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKP-----KA 133 (381)
T ss_dssp HHHHTHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTCCG-----GG
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hH
Confidence 999999876543211 112235678899999998777554 46
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+|||||+.+|++||||||||+||+..+.++.+.|+++.+..+ +++|.++|+..++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998865434 5556689999999999999999999999
Q ss_pred EEEcChhHHHH
Q 001108 404 VYQGPRELVLE 414 (1156)
Q Consensus 404 v~~G~~~~~~~ 414 (1156)
+..|+++++..
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999998754
No 19
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.6e-41 Score=388.25 Aligned_cols=207 Identities=23% Similarity=0.366 Sum_probs=178.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccC----CCcCc-cceEEEEcCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM----DEFVP-QRTAAYISQHDNHIG 239 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~----~~~~~-~~~~~yv~Q~d~~~~ 239 (1156)
..+|+|||+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++ ....+ ++.+|||+|+..+++
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 35999999999999999999999999999999999999998 99999999987 22222 467999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.|+.+.++... .+...+++++++.+||.+..|..+
T Consensus 94 ~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~--- 136 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELAGRYP--- 136 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGTTSCG---
T ss_pred CCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHhcCCh---
Confidence 9999999999875543211 011235678899999998777655
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. ++++|.++|+..++..+||+|++|+
T Consensus 137 --~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~-g~tvi~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 137 --HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN-GKSAVFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp --GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHCCEEEEEE
Confidence 4699999999999999999999999999999999999999999888776543 5566668999999999999999999
Q ss_pred CCeEEEEcChhHHHH
Q 001108 400 DGQIVYQGPRELVLE 414 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1156)
+|+++..|+++++..
T Consensus 214 ~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 214 QGRILQTASPHELYR 228 (359)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEEeCHHHHHh
Confidence 999999999998753
No 20
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.4e-41 Score=424.65 Aligned_cols=196 Identities=26% Similarity=0.387 Sum_probs=146.0
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHH---------hhhcCCCC--C--CeEE------EEEEEcCccCChhc-----
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT--G--GYIT------GNITISGYPKKQET----- 938 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl---------~~L~g~~~--~--~~~~------G~i~i~g~~~~~~~----- 938 (1156)
.|+|||++|++|+++||+|+||||||||+ +.+.+... + .... +-+.+++.++....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 48999999999999999999999999997 33433211 1 1222 23555554431100
Q ss_pred ---------------------------------------ccceEEEeccCCCCCC-------------------------
Q 001108 939 ---------------------------------------FARISGYCEQNDIHSP------------------------- 954 (1156)
Q Consensus 939 ---------------------------------------~~~~~gyv~q~~~~~~------------------------- 954 (1156)
..+..||+.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012467777666554
Q ss_pred -------CCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC-
Q 001108 955 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP- 1026 (1156)
Q Consensus 955 -------~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p- 1026 (1156)
.+||.|++.|.... .....+.++|+.++|.... .+.+ +..|||||||||+|||||+++|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 36788888775321 1234567889999996532 2222 3579999999999999999876
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 001108 1027 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1093 (1156)
Q Consensus 1027 --~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~-----~Gg~~~~~g~~ 1093 (1156)
+||||||||+|||+.+...|++.|++++++|.|||+++|+++ ....||++++|. +||++++.|+.
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCH
Confidence 799999999999999999999999999988999999999975 457799999994 57899999985
No 21
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-41 Score=373.22 Aligned_cols=214 Identities=23% Similarity=0.320 Sum_probs=185.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|. ++.+|+||||+|++||++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 488999998873 3569999999999999999999999999999999999876 5689999999876
Q ss_pred Ch--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001108 935 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 935 ~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 1012 (1156)
.. ...++.+||++|++.+++.+||+||+.|....+. ...++.++.++++++.++|.+..++.+ ..|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 43 2345679999999999999999999998765442 233344567889999999998887764 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++ |++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999986 36667999999986 68888886
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 230 ~ 230 (256)
T 1vpl_A 230 V 230 (256)
T ss_dssp H
T ss_pred H
Confidence 4
No 22
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.6e-41 Score=375.49 Aligned_cols=217 Identities=25% Similarity=0.286 Sum_probs=184.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|. ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 478999998873 3569999999999999999999999999999999999876 5689999999876
Q ss_pred Chh----cccceEEEeccCCCCCCCCCHHHHHHHHHHh-hCCC---------CCChHHHHHHHHHHHHHcCCCccccccc
Q 001108 935 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWL-RLSP---------EVDSETRKMFIDEVMELVELNPLRQSLV 1000 (1156)
Q Consensus 935 ~~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~l-r~~~---------~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 1000 (1156)
... ..++.+||++|++.+++.+||+||+.|+... +... ....++.++.++++++.++|.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 431 2345699999999888899999999986532 1110 0122344567899999999998887764
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 001108 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080 (1156)
Q Consensus 1001 ~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~ 1080 (1156)
..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 469999999999999999999999999999999999999999999999877999999999997 46778999999
Q ss_pred EecCcEEEEecCC
Q 001108 1081 MKRGGQEIYVGPL 1093 (1156)
Q Consensus 1081 l~~Gg~~~~~g~~ 1093 (1156)
|++ |++++.|+.
T Consensus 226 l~~-G~i~~~g~~ 237 (257)
T 1g6h_A 226 MFN-GQIIAEGRG 237 (257)
T ss_dssp EET-TEEEEEEES
T ss_pred EEC-CEEEEEeCH
Confidence 986 688888875
No 23
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.9e-42 Score=386.28 Aligned_cols=257 Identities=21% Similarity=0.324 Sum_probs=194.5
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.|...+.++|++++++..++ ..+.......+.+...|+|+||++.+..
T Consensus 18 ~~~~~~~~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~~~~vs~~y~~--------------------------- 65 (306)
T 3nh6_A 18 GSHMFIDMENMFDLLKEETE-----VKDLPGAGPLRFQKGRIEFENVHFSYAD--------------------------- 65 (306)
T ss_dssp -CCTTCCHHHHHHHHHHHHS-----CCCCTTCBCCCCSSCCEEEEEEEEESST---------------------------
T ss_pred HHHHHHHHHHHHHHHhCCcc-----ccccccccccCCCCCeEEEEEEEEEcCC---------------------------
Confidence 45566777888877654433 1111111222334567999999988621
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
...+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.+||.++..... ++.++||+|+
T Consensus 66 ------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~ 136 (306)
T 3nh6_A 66 ------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQD 136 (306)
T ss_dssp ------TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSS
T ss_pred ------CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecC
Confidence 134999999999999999999999999999999999999998 9999999999877643 4679999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+| ..||+|||.|+.... ..+...++.+. .+ ....+ ..++...+|
T Consensus 137 ~~lf-~~Tv~eNi~~~~~~~----~~~~~~~~~~~---~~------------------------l~~~i--~~lp~gl~t 182 (306)
T 3nh6_A 137 TVLF-NDTIADNIRYGRVTA----GNDEVEAAAQA---AG------------------------IHDAI--MAFPEGYRT 182 (306)
T ss_dssp CCCC-SEEHHHHHHTTSTTC----CHHHHHHHHHH---HT------------------------CHHHH--HHSTTGGGC
T ss_pred CccC-cccHHHHHHhhcccC----CHHHHHHHHHH---hC------------------------cHHHH--Hhccchhhh
Confidence 8776 569999999875321 11111111111 00 01111 135567789
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ ..|||||||||+|||||+.+|+|||||||||+||+.++..|++.|+++. .++|+| .++|....+.. ||+
T Consensus 183 ~~~~~g-~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~--~~~Tvi-~itH~l~~~~~-aD~ 257 (306)
T 3nh6_A 183 QVGERG-LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC--ANRTTI-VVAHRLSTVVN-ADQ 257 (306)
T ss_dssp EESTTS-BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH--TTSEEE-EECCSHHHHHT-CSE
T ss_pred HhcCCc-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEE-EEEcChHHHHc-CCE
Confidence 998754 4699999999999999999999999999999999999999999999864 345554 57788777765 999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+|++.|+++++++
T Consensus 258 i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 258 ILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999875
No 24
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=7.7e-41 Score=364.89 Aligned_cols=207 Identities=23% Similarity=0.275 Sum_probs=170.1
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1156)
..+|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.+|||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 46999999999999999999999999999999999999998 9999999998876543 2359999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccc-cccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA-DTMV 316 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~v 316 (1156)
++.+||+||+.++......+... ..+....+.++++.+||.+.. +..
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~- 142 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAMS-------------------------------GEERRKRALECLKMAELEERFANHK- 142 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCCC-------------------------------HHHHHHHHHHHHHHTTCCGGGTTCC-
T ss_pred CCCCcHHHHHHHHHHhhhccCCC-------------------------------HHHHHHHHHHHHHHCCCChhhhhCC-
Confidence 99999999999986543111000 001123456788999997643 544
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+..+.|+ |.++|+.. +.++||+|+
T Consensus 143 ----~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tv-i~vtHd~~-~~~~~d~i~ 216 (235)
T 3tif_A 143 ----PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTV-VVVTHDIN-VARFGERII 216 (235)
T ss_dssp ----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE-EEECSCHH-HHTTSSEEE
T ss_pred ----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEE-EEEcCCHH-HHHhCCEEE
Confidence 456999999999999999999999999999999999999999999999865435554 55677776 568999999
Q ss_pred EEcCCeEEEEcChhHH
Q 001108 397 LLSDGQIVYQGPRELV 412 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (1156)
+|++|+++..|+.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999987764
No 25
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=2.2e-40 Score=413.99 Aligned_cols=195 Identities=29% Similarity=0.363 Sum_probs=149.1
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhc-C-C--------CCCC---eEEE------EEEEcCccCChhc-----
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G-R--------KTGG---YITG------NITISGYPKKQET----- 938 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~-g-~--------~~~~---~~~G------~i~i~g~~~~~~~----- 938 (1156)
.|+|||++|++|+++||+|+||||||||+++|. | . ...| ...| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 499999999999999999999999999999864 1 0 0112 2334 5888887753100
Q ss_pred -----------------ccceEEEeccCCCCC----------------------C-------------------------
Q 001108 939 -----------------FARISGYCEQNDIHS----------------------P------------------------- 954 (1156)
Q Consensus 939 -----------------~~~~~gyv~q~~~~~----------------------~------------------------- 954 (1156)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 123457887754321 1
Q ss_pred -------CCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001108 955 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1026 (1156)
Q Consensus 955 -------~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p 1026 (1156)
.+||.|++.|.... .. ...+.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~~-------~~--~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFASI-------PK--IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCSC-------HH--HHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhcc-------hh--HHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 35788887764211 11 223568999999986 44544 3579999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 001108 1027 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1093 (1156)
Q Consensus 1027 ---~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~-----~Gg~~~~~g~~ 1093 (1156)
+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.||++++|. ++|++++.|+.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999975 357899999995 46899998874
No 26
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.2e-41 Score=367.63 Aligned_cols=213 Identities=22% Similarity=0.325 Sum_probs=181.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|+ ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 478999998873 3569999999999999999999999999999999999876 5689999999876
Q ss_pred Chh---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCC
Q 001108 935 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 935 ~~~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~~~~~~~~LS 1009 (1156)
... . .++.+||++|++.+++.+||+||+.|+.... ...++.++.++++++.++ |.+..++. +..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCC
Confidence 431 1 2345999999999999999999999864211 122344566788999995 88777765 35799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999878999999999986 47788999999986 68888
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 220 ~g~~ 223 (240)
T 1ji0_A 220 EGKA 223 (240)
T ss_dssp EEEH
T ss_pred EcCH
Confidence 8764
No 27
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4e-41 Score=385.29 Aligned_cols=215 Identities=24% Similarity=0.367 Sum_probs=187.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|+ +++.+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 588999988772 12348999999999999999999999999999999999876 5689999999876
Q ss_pred Ch-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
.. ...++.+|||+|+..+++.+||+||+.|+...+. .+.++.+++++++++.++|.++.++.+ .+||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKR---VPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHH
Confidence 43 2345679999999999999999999999876542 344556678999999999999888774 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++..+||++++|++ |+++..|+
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 229 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998754 999999999986 57789999999986 79999887
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 230 ~ 230 (355)
T 1z47_A 230 P 230 (355)
T ss_dssp H
T ss_pred H
Confidence 5
No 28
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=6e-41 Score=385.23 Aligned_cols=213 Identities=26% Similarity=0.382 Sum_probs=186.7
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|. ++.+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67889988773 3469999999999999999999999999999999999876 56899999998764
Q ss_pred hh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.. ..++.+|||+|+..+++.+||+||+.|+...+. .+.++.+++++++++.++|.++.++.+ .+|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 32 234679999999999999999999999865542 234556678999999999999888774 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999998654 999999999986 57789999999986 689998875
No 29
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=5e-41 Score=385.49 Aligned_cols=213 Identities=24% Similarity=0.345 Sum_probs=185.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|. ++.+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence 67899988873 3579999999999999999999999999999999999876 56899999998764
Q ss_pred hh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.. ..++.+|||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.++|.++.++.+ .+|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999975433 1223344567899999999999888774 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 999999999986 57789999999986 689999875
No 30
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=4e-41 Score=373.35 Aligned_cols=213 Identities=24% Similarity=0.320 Sum_probs=184.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.+. ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 588999998873 3579999999999999999999999999999999999876 4589999999886
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
.. ...++.+||++|++.+++.+||+||+.|+.... .....++.++++++.++|.+..++.+ .+||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 53 234567999999999888899999999875432 11233567889999999998888764 469999
Q ss_pred HHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1012 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1012 qrqrl~iA~aL~~------~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
|||||+|||||+. +|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999986 47778999999986
Q ss_pred cEEEEecCCC
Q 001108 1085 GQEIYVGPLG 1094 (1156)
Q Consensus 1085 g~~~~~g~~~ 1094 (1156)
|++++.|+..
T Consensus 224 G~i~~~g~~~ 233 (266)
T 4g1u_C 224 GKLVACGTPE 233 (266)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEEcCHH
Confidence 7999999853
No 31
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=9.5e-41 Score=385.80 Aligned_cols=213 Identities=26% Similarity=0.340 Sum_probs=186.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|. ++.+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECc
Confidence 77899988873 3579999999999999999999999999999999999876 56899999998753
Q ss_pred h-------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001108 936 Q-------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 936 ~-------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 1008 (1156)
. ...++.+|||+|+..+++.+||+||+.|+...+. .+.++.+++++++++.++|.++.++.+ .+|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----REL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCc-----ccC
Confidence 2 1234679999999999999999999999876542 344556678999999999999888764 469
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
||||||||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++..+||++++|++ |++
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i 218 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVL 218 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEE
Confidence 999999999999999999999999999999999999999999998754 999999999986 57789999999986 799
Q ss_pred EEecCC
Q 001108 1088 IYVGPL 1093 (1156)
Q Consensus 1088 ~~~g~~ 1093 (1156)
+..|+.
T Consensus 219 ~~~g~~ 224 (372)
T 1g29_1 219 QQVGSP 224 (372)
T ss_dssp EEEECH
T ss_pred EEeCCH
Confidence 999875
No 32
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-40 Score=381.35 Aligned_cols=206 Identities=26% Similarity=0.365 Sum_probs=178.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..+++++||+
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 93 (359)
T 2yyz_A 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVF 93 (359)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHH
T ss_pred EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHH
Confidence 5999999999999999999999999999999999999998 9999999999876544 46799999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+..+.. + .+...+++++++.+||++..+..+ ..|
T Consensus 94 eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 134 (359)
T 2yyz_A 94 ENIAFPLRARRIS----------K------------------------DEVEKRVVEIARKLLIDNLLDRKP-----TQL 134 (359)
T ss_dssp HHHHGGGSSSCSH----------H------------------------HHTTHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred HHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhcCCh-----hhC
Confidence 9999986543210 0 011235678899999998777655 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|+++
T Consensus 135 SgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~~~~~adri~vl~~G~i~ 213 (359)
T 2yyz_A 135 SGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG-ITSVYVTHDQAEAMTMASRIAVFNQGKLV 213 (359)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998865434 45555789999999999999999999999
Q ss_pred EEcChhHHHH
Q 001108 405 YQGPRELVLE 414 (1156)
Q Consensus 405 ~~G~~~~~~~ 414 (1156)
..|+++++..
T Consensus 214 ~~g~~~~l~~ 223 (359)
T 2yyz_A 214 QYGTPDEVYD 223 (359)
T ss_dssp EEECHHHHHH
T ss_pred EeCCHHHHHh
Confidence 9999998753
No 33
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.3e-40 Score=369.11 Aligned_cols=204 Identities=26% Similarity=0.352 Sum_probs=177.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1156)
.++|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 35999999999999999999999999999999999999998 9999999999876543 35699999998888899
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.|+...... .+....++.+++.+||.+..+..++
T Consensus 101 tv~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 140 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLALAQRDYR---- 140 (266)
T ss_dssp BHHHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTTTTSBGG----
T ss_pred CHHHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhHhcCCcc----
Confidence 999999987643210 0012346778999999887776554
Q ss_pred CCCChhHHHHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 322 RGISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~------~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
.|||||||||+|||||+. +|++|||||||+|||+.++..+++.|+++.+ .++.+|+.++|+..++.++||+|
T Consensus 141 -~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~-~~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 141 -VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR-QEPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp -GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHH-HSSEEEEEECSCHHHHHHHCSEE
T ss_pred -cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-cCCCEEEEEEcCHHHHHHhCCEE
Confidence 699999999999999999 9999999999999999999999999999865 45556677899999999999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001108 396 ILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1156)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999998874
No 34
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=7.4e-41 Score=372.13 Aligned_cols=206 Identities=25% Similarity=0.331 Sum_probs=174.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-----CccceEEEEcCCC-CCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD-NHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d-~~~~ 239 (1156)
.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.+|||+|++ ..++
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc
Confidence 4999999999999999999999999999999999999998 99999999987421 1246799999985 3455
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.|+....+... .+...+++++++.+||.+..+..++
T Consensus 99 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~-- 142 (275)
T 3gfo_A 99 SASVYQDVSFGAVNMKLPE----------------------------------DEIRKRVDNALKRTGIEHLKDKPTH-- 142 (275)
T ss_dssp SSBHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSBGG--
T ss_pred cCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCcc--
Confidence 8999999999876543210 0112346778999999987776554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+..+ ++||.++|+..++.++||+|++|+
T Consensus 143 ---~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g-~tvi~vtHdl~~~~~~~drv~~l~ 218 (275)
T 3gfo_A 143 ---CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG-ITIIIATHDIDIVPLYCDNVFVMK 218 (275)
T ss_dssp ---GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHC-CEEEEEESCCSSGGGGCSEEEEEE
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCC-CEEEEEecCHHHHHHhCCEEEEEE
Confidence 6999999999999999999999999999999999999999999999863344 455567889999999999999999
Q ss_pred CCeEEEEcChhHHHH
Q 001108 400 DGQIVYQGPRELVLE 414 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1156)
+|++++.|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 219 EGRVILQGNPKEVFA 233 (275)
T ss_dssp TTEEEEEECHHHHTH
T ss_pred CCEEEEECCHHHHhc
Confidence 999999999998754
No 35
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.3e-40 Score=364.80 Aligned_cols=205 Identities=20% Similarity=0.340 Sum_probs=174.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCC--CcC---ccceEEEEcCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD--EFV---PQRTAAYISQHDNHIGE 240 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~--~~~---~~~~~~yv~Q~d~~~~~ 240 (1156)
++|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++. ... .++.++||+|++.+++.
T Consensus 38 ~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~ 114 (263)
T 2olj_A 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 114 (263)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTT
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCC
Confidence 4999999999999999999999999999999999999998 999999999874 111 13569999999989999
Q ss_pred CCHHHHHHHHh-hhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 241 MTVRETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 241 lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
+||+||+.|+. +..+... .+....++.+++.+||.+..+..++
T Consensus 115 ~tv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~-- 158 (263)
T 2olj_A 115 MTVLNNITLAPMKVRKWPR----------------------------------EKAEAKAMELLDKVGLKDKAHAYPD-- 158 (263)
T ss_dssp SCHHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG--
T ss_pred CCHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCChh--
Confidence 99999999964 3322100 0012346778999999887776554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.. . +++||.++|+..++.++||+|++|+
T Consensus 159 ---~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~d~v~~l~ 233 (263)
T 2olj_A 159 ---SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-E-GMTMVVVTHEMGFAREVGDRVLFMD 233 (263)
T ss_dssp ---GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 6999999999999999999999999999999999999999999998865 3 4556668899999999999999999
Q ss_pred CCeEEEEcChhHHHH
Q 001108 400 DGQIVYQGPRELVLE 414 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1156)
+|++++.|+++++..
T Consensus 234 ~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 234 GGYIIEEGKPEDLFD 248 (263)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
No 36
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.9e-40 Score=381.06 Aligned_cols=206 Identities=27% Similarity=0.394 Sum_probs=178.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
++|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..+++.+||+
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 93 (362)
T 2it1_A 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVY 93 (362)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHH
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHH
Confidence 5999999999999999999999999999999999999998 9999999999866544 46799999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+.++... .+...+++++++.+||.+..+..+ ..|
T Consensus 94 eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 134 (362)
T 2it1_A 94 KNIAFPLELRKAPR----------------------------------EEIDKKVREVAKMLHIDKLLNRYP-----WQL 134 (362)
T ss_dssp HHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCG-----GGS
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhhCCh-----hhC
Confidence 99999875442110 011235678899999988777554 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ +++|.++|+..++..++|+|++|++|+++
T Consensus 135 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i~ 213 (362)
T 2it1_A 135 SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG-ITTVYVTHDQAEALAMADRIAVIREGEIL 213 (362)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCC-CEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998865434 44555789999999999999999999999
Q ss_pred EEcChhHHHH
Q 001108 405 YQGPRELVLE 414 (1156)
Q Consensus 405 ~~G~~~~~~~ 414 (1156)
..|+++++..
T Consensus 214 ~~g~~~~~~~ 223 (362)
T 2it1_A 214 QVGTPDEVYY 223 (362)
T ss_dssp EEECHHHHHH
T ss_pred EEcCHHHHHh
Confidence 9999998753
No 37
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.4e-40 Score=358.59 Aligned_cols=199 Identities=26% Similarity=0.352 Sum_probs=168.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~~~ 238 (1156)
.+|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 18 ~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 94 (224)
T 2pcj_A 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLI 94 (224)
T ss_dssp EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCC
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccC
Confidence 5999999999999999999999999999999999999998 9999999998865432 15699999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||+||+.|+....+... .+....++.+++.+||.+..+..++
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~- 139 (224)
T 2pcj_A 95 PELTALENVIVPMLKMGKPK----------------------------------KEAKERGEYLLSELGLGDKLSRKPY- 139 (224)
T ss_dssp TTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCGG-
T ss_pred CCCCHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCChh-
Confidence 99999999999765432110 0012246778999999887776554
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+. +. +|+.++|+...+ ++||+|++|
T Consensus 140 ----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~-tvi~vtHd~~~~-~~~d~v~~l 212 (224)
T 2pcj_A 140 ----ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GT-SIVMVTHERELA-ELTHRTLEM 212 (224)
T ss_dssp ----GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC-EEEEECSCHHHH-TTSSEEEEE
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CC-EEEEEcCCHHHH-HhCCEEEEE
Confidence 69999999999999999999999999999999999999999999988653 44 455577777776 899999999
Q ss_pred cCCeEEEEcCh
Q 001108 399 SDGQIVYQGPR 409 (1156)
Q Consensus 399 ~~G~iv~~G~~ 409 (1156)
++|++++.|++
T Consensus 213 ~~G~i~~~g~~ 223 (224)
T 2pcj_A 213 KDGKVVGEITR 223 (224)
T ss_dssp ETTEEEEEEEC
T ss_pred ECCEEEEEeee
Confidence 99999999864
No 38
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=9.4e-41 Score=384.99 Aligned_cols=213 Identities=23% Similarity=0.350 Sum_probs=180.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|. ++.+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 12 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence 78999998873 3569999999999999999999999999999999999876 56899999998764
Q ss_pred hh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.. ..+|.+|||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.++|.++.++.+ .+|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 32 23467999999999999999999999975433 2344556678999999999999888764 579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++..+||++++|++ |+++..|+.
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998755 999999999986 57789999999986 689998875
No 39
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.6e-40 Score=366.51 Aligned_cols=205 Identities=23% Similarity=0.325 Sum_probs=173.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC----------cC------ccceEE
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----------FV------PQRTAA 229 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~----------~~------~~~~~~ 229 (1156)
++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .. .++.++
T Consensus 20 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 96 (262)
T 1b0u_A 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT 96 (262)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEE
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcceE
Confidence 4999999999999999999999999999999999999998 9999999998751 11 135699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHh-hhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCC
Q 001108 230 YISQHDNHIGEMTVRETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1156)
Q Consensus 230 yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (1156)
||+|++.+++.+||+||+.|+. ...+... .+....++.+++.+||
T Consensus 97 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L 142 (262)
T 1b0u_A 97 MVFQHFNLWSHMTVLENVMEAPIQVLGLSK----------------------------------HDARERALKYLAKVGI 142 (262)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTTCCCH----------------------------------HHHHHHHHHHHHHTTC
T ss_pred EEecCcccCCCCcHHHHHHhhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCC
Confidence 9999999999999999999864 3222100 0012346778999999
Q ss_pred ccc-ccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 001108 309 DVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1156)
Q Consensus 309 ~~~-~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~ 387 (1156)
.+. .+..++ .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ .+ ++||.++|+..+
T Consensus 143 ~~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~g-~tvi~vtHd~~~ 215 (262)
T 1b0u_A 143 DERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EG-KTMVVVTHEMGF 215 (262)
T ss_dssp CHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TT-CCEEEECSCHHH
T ss_pred CchhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CC-CEEEEEeCCHHH
Confidence 887 776554 6999999999999999999999999999999999999999999998865 34 445557889999
Q ss_pred HHhhcCeEEEEcCCeEEEEcChhHHHH
Q 001108 388 TYDLFDDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 388 ~~~~~D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
+..+||+|++|++|++++.|+++++..
T Consensus 216 ~~~~~d~v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 216 ARHVSSHVIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999988753
No 40
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=4e-40 Score=380.55 Aligned_cols=206 Identities=26% Similarity=0.374 Sum_probs=177.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC------cCc-cceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE------FVP-QRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~------~~~-~~~~~yv~Q~d~~~ 238 (1156)
++|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..+ ++.+|||+|+..++
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~ 93 (372)
T 1g29_1 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93 (372)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCC
T ss_pred EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCccC
Confidence 5999999999999999999999999999999999999998 9999999988754 322 46799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+++||+||+.|+.+..+... .+...+++++++.+||.+..+..+
T Consensus 94 ~~ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~-- 137 (372)
T 1g29_1 94 PHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKP-- 137 (372)
T ss_dssp TTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCG--
T ss_pred CCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCCc--
Confidence 99999999999875543210 011235678899999988777554
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..|||||||||+|||||+.+|++||||||||+||+.++.++.+.|+++.+..+ +++|.++|+..++..++|+|++|
T Consensus 138 ---~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl 213 (372)
T 1g29_1 138 ---RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG-VTTIYVTHDQVEAMTMGDRIAVM 213 (372)
T ss_dssp ---GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEE
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999998765434 45555789999999999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001108 399 SDGQIVYQGPRELVLE 414 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1156)
++|+++..|+++++..
T Consensus 214 ~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 214 NRGVLQQVGSPDEVYD 229 (372)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred eCCEEEEeCCHHHHHh
Confidence 9999999999998753
No 41
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=5.9e-41 Score=385.26 Aligned_cols=213 Identities=27% Similarity=0.375 Sum_probs=185.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceE--EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLV--LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~--~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
++++|++++|. ++. +|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.+
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 67899998874 123 8999999999999999999999999999999999876 568999999987
Q ss_pred CCh------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001108 934 KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1156)
Q Consensus 934 ~~~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~ 1007 (1156)
+.. ...++.+|||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.++|.++.++.+ .+
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 532 234567999999999999999999999976443 2344556678999999999999888774 46
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
|||||||||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998654 999999999986 57889999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
++..|+.
T Consensus 219 i~~~g~~ 225 (353)
T 1oxx_K 219 LVQVGKP 225 (353)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9998875
No 42
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.6e-40 Score=378.56 Aligned_cols=206 Identities=26% Similarity=0.393 Sum_probs=178.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
++|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.+|||+|+..+++.+||+
T Consensus 29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 105 (355)
T 1z47_A 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVY 105 (355)
T ss_dssp TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999999865443 46799999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+..+... .+...+++++++.+||.+..+..+ ..|
T Consensus 106 eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~-----~~L 146 (355)
T 1z47_A 106 DNVSFGLREKRVPK----------------------------------DEMDARVRELLRFMRLESYANRFP-----HEL 146 (355)
T ss_dssp HHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCc-----ccC
Confidence 99999875542210 011235678899999998777554 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ +++|.++|+..++..++|+|++|++|+++
T Consensus 147 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i~ 225 (355)
T 1z47_A 147 SGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG-VTSVFVTHDQEEALEVADRVLVLHEGNVE 225 (355)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998865434 45555889999999999999999999999
Q ss_pred EEcChhHHHH
Q 001108 405 YQGPRELVLE 414 (1156)
Q Consensus 405 ~~G~~~~~~~ 414 (1156)
..|+++++..
T Consensus 226 ~~g~~~~l~~ 235 (355)
T 1z47_A 226 QFGTPEEVYE 235 (355)
T ss_dssp EEECHHHHHH
T ss_pred EEcCHHHHHh
Confidence 9999998753
No 43
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3.2e-40 Score=380.55 Aligned_cols=206 Identities=25% Similarity=0.353 Sum_probs=171.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..+++++||+
T Consensus 25 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 101 (372)
T 1v43_A 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVY 101 (372)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHH
Confidence 4999999999999999999999999999999999999998 9999999999876544 46799999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+..+... .+...+++++++.+||.+..+..+ ..|
T Consensus 102 eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 142 (372)
T 1v43_A 102 ENIAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLNRYP-----AQL 142 (372)
T ss_dssp HHHHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCT-----TTC
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCh-----hhC
Confidence 99999864432110 011235678899999998777554 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++||||||||+||+.++.++.+.|+++.+..+ +++|.++|+..++..++|+|++|++|+++
T Consensus 143 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i~ 221 (372)
T 1v43_A 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK-VTTIYVTHDQVEAMTMGDRIAVMNRGQLL 221 (372)
T ss_dssp CSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998865434 45555789999999999999999999999
Q ss_pred EEcChhHHHH
Q 001108 405 YQGPRELVLE 414 (1156)
Q Consensus 405 ~~G~~~~~~~ 414 (1156)
..|+++++..
T Consensus 222 ~~g~~~~l~~ 231 (372)
T 1v43_A 222 QIGSPTEVYL 231 (372)
T ss_dssp EEECHHHHHH
T ss_pred EeCCHHHHHh
Confidence 9999998743
No 44
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.4e-40 Score=377.49 Aligned_cols=201 Identities=24% Similarity=0.362 Sum_probs=176.2
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..+++.+||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 899999999999999999999999999999999999998 9999999998865433 467999999999999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+.|+.+..+... . .+++++++.+||++..|..+ ..||
T Consensus 92 nl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~~~-----~~LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDRNP-----LTLS 129 (348)
T ss_dssp HHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTSCG-----GGSC
T ss_pred HHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 9999865432110 0 23567899999998777655 4699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1156)
|||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.+.. ++++|.++|+..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999886543 4455568899999999999999999999999
Q ss_pred EcChhHHH
Q 001108 406 QGPRELVL 413 (1156)
Q Consensus 406 ~G~~~~~~ 413 (1156)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99999874
No 45
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=5.2e-40 Score=411.70 Aligned_cols=106 Identities=25% Similarity=0.360 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 001108 981 MFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056 (1156)
Q Consensus 981 ~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~---p~illLDEPTsgLD~~~~~~i~~~l~~~~~~ 1056 (1156)
+.+.++++.++|... .+.. +..|||||||||+||++|+.+ |+||||||||+|||+.+...|+++|++++++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 457889999999864 3443 357999999999999999996 6999999999999999999999999999888
Q ss_pred CCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 001108 1057 GRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1093 (1156)
Q Consensus 1057 g~tvi~~~H~~~~~i~~~~d~v~~l~-----~Gg~~~~~g~~ 1093 (1156)
|.|||+++|+++. + +.||++++|. ++|++++.|+.
T Consensus 783 G~tVIvisHdl~~-i-~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 783 GNTVIAVEHKMQV-V-AASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp TCEEEEECCCHHH-H-TTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred CCEEEEEcCCHHH-H-HhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 9999999999753 4 8899999995 46899998874
No 46
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6e-40 Score=361.55 Aligned_cols=205 Identities=25% Similarity=0.322 Sum_probs=174.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1156)
.+|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+||
T Consensus 29 ~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv 105 (256)
T 1vpl_A 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQG 105 (256)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBH
T ss_pred EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcH
Confidence 4999999999999999999999999999999999999998 999999999875421 23579999999989999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.|+....+... .+....++.+++.+||.+..+..++ .
T Consensus 106 ~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 146 (256)
T 1vpl_A 106 IEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS-----T 146 (256)
T ss_dssp HHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG-----G
T ss_pred HHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHCCCchHhcCChh-----h
Confidence 999998754332110 0011245678999999987776554 6
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.. . +++|+.++|+..++..+||+|++|++|++
T Consensus 147 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tiiivtHd~~~~~~~~d~v~~l~~G~i 224 (256)
T 1vpl_A 147 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-E-GLTILVSSHNMLEVEFLCDRIALIHNGTI 224 (256)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEEECCHHHHTTTCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-C-CCEEEEEcCCHHHHHHHCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 3 45555678888999999999999999999
Q ss_pred EEEcChhHHHH
Q 001108 404 VYQGPRELVLE 414 (1156)
Q Consensus 404 v~~G~~~~~~~ 414 (1156)
++.|+++++.+
T Consensus 225 ~~~g~~~~~~~ 235 (256)
T 1vpl_A 225 VETGTVEELKE 235 (256)
T ss_dssp EEEEEHHHHHH
T ss_pred EEecCHHHHHH
Confidence 99999988754
No 47
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=3.5e-40 Score=378.82 Aligned_cols=205 Identities=20% Similarity=0.288 Sum_probs=177.1
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC-----cC-ccceEEEEcCCCCCCCC
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE-----FV-PQRTAAYISQHDNHIGE 240 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~-----~~-~~~~~~yv~Q~d~~~~~ 240 (1156)
+|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .. .++.+|||+|+..+++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 899999999999999999999999999999999999998 9999999988754 22 24689999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1156)
+||+||+.|+.+..+... .+...+++++++.+||++..+..+
T Consensus 97 ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~~~~---- 138 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFP---- 138 (353)
T ss_dssp SCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCG----
T ss_pred CCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCCh----
Confidence 999999999875432110 011235678899999998777655
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
..|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ +++|.++|+..++..++|+|++|++
T Consensus 139 -~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 139 -RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG-VTLLVVSHDPADIFAIADRVGVLVK 216 (353)
T ss_dssp -GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEET
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998865434 4455578999999999999999999
Q ss_pred CeEEEEcChhHHHH
Q 001108 401 GQIVYQGPRELVLE 414 (1156)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1156)
|+++..|+++++..
T Consensus 217 G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 217 GKLVQVGKPEDLYD 230 (353)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999998753
No 48
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4.1e-40 Score=362.71 Aligned_cols=218 Identities=26% Similarity=0.286 Sum_probs=175.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|+ ++.+|+||||+|++||++||+||||||||||+++|+|.....+.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 78899998873 35699999999999999999999999999999999997211267899999998764
Q ss_pred hh---cc-cceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCC-CcccccccCCCCCCC-CC
Q 001108 936 QE---TF-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQSLVGLPGVSG-LS 1009 (1156)
Q Consensus 936 ~~---~~-~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l-~~~~~~~~~~~~~~~-LS 1009 (1156)
.. .. ++.++|++|++.+++.+||+||+.+.............+..+.++++++.++| .+..++.+ .. ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCC
Confidence 31 12 33589999999999999999999986532111112233445678899999999 47777663 45 99
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecCcEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGGQEI 1088 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~-~d~v~~l~~Gg~~~ 1088 (1156)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++. +... ||++++|++ |+++
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~~d~v~~l~~-G~i~ 223 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYIQPDKVHVMMD-GRVV 223 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTSCCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999997679999999999873 5555 599999986 6899
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
+.|+.
T Consensus 224 ~~g~~ 228 (250)
T 2d2e_A 224 ATGGP 228 (250)
T ss_dssp EEESH
T ss_pred EEeCH
Confidence 88874
No 49
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.9e-40 Score=379.48 Aligned_cols=209 Identities=21% Similarity=0.287 Sum_probs=182.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|. ++ +|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~-------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWK-------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECS-------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 56788887763 34 8999999999999999999999999999999999876 56899999998764
Q ss_pred h-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
. ...++.+|||+|+..+++.+||+||+.|+...+.. ... ++++++++.++|.++.++.+ .+|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 22356799999999999999999999998765432 111 56889999999999888774 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||+|||||+.+|++|||||||||||+.++..+++.|+++.+ .|.|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999865 4999999999986 57789999999986 688888874
No 50
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9.5e-40 Score=357.62 Aligned_cols=203 Identities=23% Similarity=0.336 Sum_probs=170.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.+
T Consensus 20 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~l 96 (240)
T 1ji0_A 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96 (240)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTS
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCC
Confidence 4999999999999999999999999999999999999998 9999999998865432 24599999999899999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcC-Ccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LDVCADTMVGDEM 320 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~~ 320 (1156)
||+||+.|+.... .. . + +....++.+++.++ |.+..+..+
T Consensus 97 tv~enl~~~~~~~-~~-~-~--------------------------------~~~~~~~~~l~~~~~l~~~~~~~~---- 137 (240)
T 1ji0_A 97 TVYENLMMGAYNR-KD-K-E--------------------------------GIKRDLEWIFSLFPRLKERLKQLG---- 137 (240)
T ss_dssp BHHHHHHGGGTTC-CC-S-S--------------------------------HHHHHHHHHHHHCHHHHTTTTSBS----
T ss_pred cHHHHHHHhhhcC-CC-H-H--------------------------------HHHHHHHHHHHHcccHhhHhcCCh----
Confidence 9999999864211 00 0 0 01123456788884 876666544
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ .+.| |+.++|+..++.++||+|++|++
T Consensus 138 -~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t-vi~vtHd~~~~~~~~d~v~~l~~ 214 (240)
T 1ji0_A 138 -GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTT-ILLVEQNALGALKVAHYGYVLET 214 (240)
T ss_dssp -SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCC-EEEEESCHHHHHHHCSEEEEEET
T ss_pred -hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCE-EEEEecCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998764 4444 55578888899999999999999
Q ss_pred CeEEEEcChhHHH
Q 001108 401 GQIVYQGPRELVL 413 (1156)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1156)
|++++.|+++++.
T Consensus 215 G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 215 GQIVLEGKASELL 227 (240)
T ss_dssp TEEEEEEEHHHHH
T ss_pred CEEEEEcCHHHHh
Confidence 9999999988764
No 51
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.8e-40 Score=363.65 Aligned_cols=215 Identities=27% Similarity=0.365 Sum_probs=173.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 97 (257)
T 1g6h_A 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97 (257)
T ss_dssp EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGS
T ss_pred eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCC
Confidence 4999999999999999999999999999999999999998 9999999998865432 34699999998889999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.|+......+. ...... ..... ...+....++++++.+||++..+..++
T Consensus 98 tv~enl~~~~~~~~~~~----~~~~~~----~~~~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 152 (257)
T 1g6h_A 98 TVLENLLIGEICPGESP----LNSLFY----KKWIP-------------KEEEMVEKAFKILEFLKLSHLYDRKAG---- 152 (257)
T ss_dssp BHHHHHHGGGTSTTSCH----HHHHHH----CSSCC-------------CCHHHHHHHHHHHHHTTCGGGTTSBGG----
T ss_pred cHHHHHHHHHhhhccCc----cccccc----ccccC-------------CHHHHHHHHHHHHHHcCCchhhCCCch----
Confidence 99999998753200000 000000 00000 000112346778999999887776654
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ . +++||.++|+..++.++||+|++|++|
T Consensus 153 -~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~d~v~~l~~G 229 (257)
T 1g6h_A 153 -ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K-GITFLIIEHRLDIVLNYIDHLYVMFNG 229 (257)
T ss_dssp -GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCSTTGGGCSEEEEEETT
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 5999999999999999999999999999999999999999999998864 3 445556788888999999999999999
Q ss_pred eEEEEcChhH
Q 001108 402 QIVYQGPREL 411 (1156)
Q Consensus 402 ~iv~~G~~~~ 411 (1156)
++++.|++++
T Consensus 230 ~i~~~g~~~~ 239 (257)
T 1g6h_A 230 QIIAEGRGEE 239 (257)
T ss_dssp EEEEEEESHH
T ss_pred EEEEEeCHHH
Confidence 9999999888
No 52
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.3e-40 Score=366.66 Aligned_cols=217 Identities=22% Similarity=0.325 Sum_probs=180.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|+... ...+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECc
Confidence 67889998874100 001579999999999999999999999999999999999876 56899999998875
Q ss_pred hhcccceEEEeccCC-CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC--cccccccCCCCCCCCCHHH
Q 001108 936 QETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN--PLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 936 ~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~~~~~~~~~LSgGq 1012 (1156)
...+++.+||++|++ ..++.+||+||+.|+.... ...++.+++++++++.++|. +..++.+ .+|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHH
Confidence 434456799999995 4566799999999864322 11112245678999999998 8777764 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+...||++++|++ |++++.|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 221 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999777999999999987 36678999999986 68888876
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 222 ~ 222 (266)
T 2yz2_A 222 R 222 (266)
T ss_dssp H
T ss_pred H
Confidence 3
No 53
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.6e-40 Score=369.11 Aligned_cols=220 Identities=22% Similarity=0.349 Sum_probs=180.3
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcC
Q 001108 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1156)
....++++|+++.|+ ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 18 ~~~~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g 82 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFG 82 (279)
T ss_dssp -CEEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETT
T ss_pred CCceEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECC
Confidence 334589999998873 3569999999999999999999999999999999999876 5689999999
Q ss_pred ccCC--h---hcccceEEEeccCCCCC--CCCCHHHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCC
Q 001108 932 YPKK--Q---ETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003 (1156)
Q Consensus 932 ~~~~--~---~~~~~~~gyv~q~~~~~--~~~Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~ 1003 (1156)
.++. . ..+++.+||++|++.+. +.+||+||+.|+...... .....++.++.++++++.++|.+..++.+
T Consensus 83 ~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--- 159 (279)
T 2ihy_A 83 KMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI--- 159 (279)
T ss_dssp BCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG---
T ss_pred EEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh---
Confidence 8764 2 23456799999987543 356999999875321100 00112334567889999999988887764
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCCcHHHHHhcCeEEEE
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tv--i~~~H~~~~~i~~~~d~v~~l 1081 (1156)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|| |++||+++ ++.+.||++++|
T Consensus 160 --~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l 236 (279)
T 2ihy_A 160 --GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLL 236 (279)
T ss_dssp --GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999997669999 99999987 466789999999
Q ss_pred ecCcEEEEecCC
Q 001108 1082 KRGGQEIYVGPL 1093 (1156)
Q Consensus 1082 ~~Gg~~~~~g~~ 1093 (1156)
++ |++++.|+.
T Consensus 237 ~~-G~i~~~g~~ 247 (279)
T 2ihy_A 237 KD-GQSIQQGAV 247 (279)
T ss_dssp ET-TEEEEEEEH
T ss_pred EC-CEEEEECCH
Confidence 86 689988874
No 54
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.1e-40 Score=358.92 Aligned_cols=208 Identities=20% Similarity=0.303 Sum_probs=177.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.|+ + +|+||||+|++ |++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 56788888873 1 49999999999 9999999999999999999999876 56899999998764
Q ss_pred h-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
. ...++.+||++|++.+++.+||+||+.|+...+ .....++.++++++.++|.+..++.+ .+|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 3 223467999999999999999999999864322 11222567889999999998877764 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999998754 999999999986 47788999999986 688888874
No 55
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-39 Score=356.42 Aligned_cols=202 Identities=22% Similarity=0.309 Sum_probs=172.3
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-ccceEEEEcCCCCCCCCCCHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
+|+|||+++++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999998 999999999875432 2467999999999999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+.|+....+. .. ....++.+++.+||.+..+..++ .||
T Consensus 90 nl~~~~~~~~~-------~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER-------VE-----------------------------RDRRVREMAEKLGIAHLLDRKPA-----RLS 128 (240)
T ss_dssp HHHTTCTTSCH-------HH-----------------------------HHHHHHHHHHTTTCTTTTTCCGG-----GSC
T ss_pred HHHHHHHHcCC-------ch-----------------------------HHHHHHHHHHHcCCHHHhcCChh-----hCC
Confidence 99987533210 00 01245678899999887776554 699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1156)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+..+.|+ +.++|+..++..+||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tv-i~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI-LHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCE-EEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE-EEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998765334554 447888889999999999999999999
Q ss_pred EcChhHHHH
Q 001108 406 QGPRELVLE 414 (1156)
Q Consensus 406 ~G~~~~~~~ 414 (1156)
.|+++++.+
T Consensus 208 ~g~~~~~~~ 216 (240)
T 2onk_A 208 KGKLKELFS 216 (240)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999988753
No 56
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=7.6e-39 Score=401.73 Aligned_cols=195 Identities=27% Similarity=0.355 Sum_probs=146.3
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhc-C----CC-----CCCe---EEE------EEEEcCccCChh------
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----RK-----TGGY---ITG------NITISGYPKKQE------ 937 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~-g----~~-----~~~~---~~G------~i~i~g~~~~~~------ 937 (1156)
+|+||||+|++|+++||+|+||||||||+++|. | .. ..|. ..| .|.+++.++...
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 489999999999999999999999999999963 2 11 1121 123 366676654210
Q ss_pred -----------c-----ccceEEEeccCCCCC----------------------C-------------------------
Q 001108 938 -----------T-----FARISGYCEQNDIHS----------------------P------------------------- 954 (1156)
Q Consensus 938 -----------~-----~~~~~gyv~q~~~~~----------------------~------------------------- 954 (1156)
. ..+..||++|...+. +
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 0 123457777753321 1
Q ss_pred -------CCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001108 955 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1026 (1156)
Q Consensus 955 -------~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p 1026 (1156)
.+||.|++.|...+ .. ...+.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~~-------~~--~~~~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEPI-------AG--VHRYLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTTC-------HH--HHHHHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhcc-------hH--HHHHHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCC
Confidence 35777777764321 11 223568899999976 34444 3579999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 001108 1027 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1093 (1156)
Q Consensus 1027 ---~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~-----~Gg~~~~~g~~ 1093 (1156)
+||||||||+|||+.+...|+++|++++++|.|||+++|+++ ..+.||++++|. ++|++++.|+.
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gg~~~G~Iv~~G~~ 955 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD--VIKTSDWIIDLGPEGGAGGGTVVAQGTP 955 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSTTSCSEEEEEECH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCcCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999975 357899999995 57899999875
No 57
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.2e-39 Score=358.74 Aligned_cols=220 Identities=25% Similarity=0.303 Sum_probs=180.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|. ++.+|+||||+|++||++||+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 589999998873 3579999999999999999999999999999999999742226789999999876
Q ss_pred Ch---hcc-cceEEEeccCCCCCCCCCHHHHHHHHHH-hh---CCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 001108 935 KQ---ETF-ARISGYCEQNDIHSPFVTIYESLLFSAW-LR---LSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 1005 (1156)
Q Consensus 935 ~~---~~~-~~~~gyv~q~~~~~~~~Tv~e~l~~~~~-lr---~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~ 1005 (1156)
.. ... ++.+||++|++.+++.+||.|++.+... ++ .....+.++.++.++++++.++|. ...+..++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 42 112 2348999999999999999999987542 21 111223344456789999999996 46665532
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecC
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1084 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~-~d~v~~l~~G 1084 (1156)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++. +... ||++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEEC-
Confidence 2499999999999999999999999999999999999999999999987679999999999863 4444 899999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 241 G~i~~~g~~ 249 (267)
T 2zu0_C 241 GRIVKSGDF 249 (267)
T ss_dssp TEEEEEECT
T ss_pred CEEEEEcCH
Confidence 689998875
No 58
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.4e-39 Score=366.45 Aligned_cols=213 Identities=24% Similarity=0.331 Sum_probs=177.0
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcC
Q 001108 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1156)
.+..++++||+++|+ +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 50 ~~~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G 115 (306)
T 3nh6_A 50 QKGRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDG 115 (306)
T ss_dssp SSCCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETT
T ss_pred CCCeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECC
Confidence 345799999999984 13469999999999999999999999999999999999876 5689999999
Q ss_pred ccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccc-------cccC
Q 001108 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-------SLVG 1001 (1156)
Q Consensus 932 ~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-------~~~~ 1001 (1156)
.++.. ..+++.+|||+|++.+++ .||+|||.|+... .. .+.++++++.+++.+..+ ..++
T Consensus 116 ~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~ 185 (306)
T 3nh6_A 116 QDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVG 185 (306)
T ss_dssp EETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CC----HHHHHHHHHHHTCHHHHHHSTTGGGCEES
T ss_pred EEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CC----HHHHHHHHHHhCcHHHHHhccchhhhHhc
Confidence 98754 345677999999998875 6999999986321 11 234667777777765433 3344
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1002 ~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
.. +..|||||||||+|||||+.+|+||||||||||||+.++..|++.|+++. +++|||+++|+++. + ..||++++|
T Consensus 186 ~~-g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~-~-~~aD~i~vl 261 (306)
T 3nh6_A 186 ER-GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLST-V-VNADQILVI 261 (306)
T ss_dssp TT-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHH-H-HTCSEEEEE
T ss_pred CC-cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHH-H-HcCCEEEEE
Confidence 43 35799999999999999999999999999999999999999999999986 47999999999863 4 559999999
Q ss_pred ecCcEEEEecCC
Q 001108 1082 KRGGQEIYVGPL 1093 (1156)
Q Consensus 1082 ~~Gg~~~~~g~~ 1093 (1156)
++ |+++..|+.
T Consensus 262 ~~-G~iv~~G~~ 272 (306)
T 3nh6_A 262 KD-GCIVERGRH 272 (306)
T ss_dssp ET-TEEEEEECH
T ss_pred EC-CEEEEECCH
Confidence 86 799999984
No 59
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=5e-39 Score=354.10 Aligned_cols=207 Identities=22% Similarity=0.346 Sum_probs=174.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.
T Consensus 4 ~l~i~~l~~~y~~------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~------ 63 (253)
T 2nq2_C 4 ALSVENLGFYYQA------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE------ 63 (253)
T ss_dssp EEEEEEEEEEETT------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE------
T ss_pred eEEEeeEEEEeCC------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE------
Confidence 3788999988730 2469999999999999999999999999999999999876 4689997
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCC-CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
.++.+||++|++.+++.+||+||+.|+....... .......++.++++++.++|.+..++.+ .+||||||
T Consensus 64 ----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~ 134 (253)
T 2nq2_C 64 ----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQR 134 (253)
T ss_dssp ----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHH
T ss_pred ----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHH
Confidence 2356999999999988999999999864322110 0112334567899999999998877764 46999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ .+...||++++|++ |+ ++.|+
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~ 211 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGE 211 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCC
Confidence 9999999999999999999999999999999999999999776 999999999986 46688999999987 56 88876
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 212 ~ 212 (253)
T 2nq2_C 212 T 212 (253)
T ss_dssp H
T ss_pred H
Confidence 4
No 60
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=5.1e-39 Score=352.96 Aligned_cols=212 Identities=26% Similarity=0.421 Sum_probs=175.4
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++++|++++|+. +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 6 ~~~~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CceeEEEEEEEeCC-----------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 46899999988731 13469999999999999999999999999999999999876 468999999987
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccccccc-------CCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-------GLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~-------~~~ 1003 (1156)
+.. ..+++.+||++|++.+++ .||+||+.|+. .... ++.++++++.+++.+..+... +.+
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~-----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~ 142 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC-----TTCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTT
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC-----CCCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCC
Confidence 643 234567999999998876 69999998752 1111 234677888888876655432 222
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++. +|+|||++||+++. + +.||++++|++
T Consensus 143 -~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~ 218 (247)
T 2ff7_A 143 -GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK 218 (247)
T ss_dssp -TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC
Confidence 46799999999999999999999999999999999999999999999995 69999999999863 4 56999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 219 -G~i~~~g~~ 227 (247)
T 2ff7_A 219 -GKIVEQGKH 227 (247)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 688888874
No 61
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.8e-39 Score=353.72 Aligned_cols=193 Identities=21% Similarity=0.349 Sum_probs=168.2
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCCHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIY 959 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~ 959 (1156)
+|+||||+|++||+++|+||||||||||+++|+|... +. |+|.++|.+... ..+++.+||++|++.+++.+||+
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 6999999999999999999999999999999999876 56 999999987632 23456799999999988899999
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC-------EEEEe
Q 001108 960 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS-------IIFMD 1032 (1156)
Q Consensus 960 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~-------illLD 1032 (1156)
||+.|+.. . ... ++.++++++.++|.+..++.+ ..||||||||++|||||+.+|+ +||||
T Consensus 92 e~l~~~~~-~---~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 92 HYLTLHQH-D---KTR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp HHHHTTCS-S---TTC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHhhc-c---CCc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE
Confidence 99987521 1 111 456789999999998877764 4699999999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1033 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|||+|||+.++..+++.|+++.++|+|||++||+++ .+...||++++|++ |++++.|+.
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 217 (249)
T 2qi9_C 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 217 (249)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999777999999999986 46688999999986 688888864
No 62
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1e-38 Score=354.63 Aligned_cols=205 Identities=27% Similarity=0.396 Sum_probs=172.5
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCC-CCCCCCCH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMTV 243 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (1156)
+.+|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 45999999999999999999999999999999999999998 999999998875332346799999985 56778999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc--cccccccccccc
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD--VCADTMVGDEMI 321 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~vg~~~~ 321 (1156)
+||+.|+.... ... .+....++.+++.+||. +..+..+
T Consensus 97 ~enl~~~~~~~-~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~----- 136 (266)
T 2yz2_A 97 FDEVAFAVKNF-YPD----------------------------------RDPVPLVKKAMEFVGLDFDSFKDRVP----- 136 (266)
T ss_dssp HHHHHHTTTTT-CTT----------------------------------SCSHHHHHHHHHHTTCCHHHHTTCCG-----
T ss_pred HHHHHHHHHhc-CCH----------------------------------HHHHHHHHHHHHHcCcCCcccccCCh-----
Confidence 99999864321 000 00112456789999998 7777655
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ . +.+||.++|+..++..+||+|++|++|
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT-L-GKTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998765 3 445555788888888999999999999
Q ss_pred eEEEEcChhHHHH
Q 001108 402 QIVYQGPRELVLE 414 (1156)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1156)
++++.|+++++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988764
No 63
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-39 Score=349.22 Aligned_cols=197 Identities=20% Similarity=0.272 Sum_probs=169.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|+ + .+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEh
Confidence 588999998873 3 69999999999999999999999999999999999876 5689999999876
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
. ..++.+||++|++.+++.+||+||+.|+...+.. . . + ++.++++++.++|.+. +.. +..|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~--~-~-~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K--V-N-KNEIMDALESVEVLDL-KKK-----LGELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C--C-C-HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c--h-H-HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHH
Confidence 5 3466799999999999999999999987654321 1 1 1 3557889999999877 655 3579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
||+||+||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...+|+++++
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~ 206 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY 206 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe
Confidence 999999999999999999999999999999999999999766899999999997 466677887755
No 64
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3.1e-39 Score=359.40 Aligned_cols=214 Identities=21% Similarity=0.287 Sum_probs=172.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|+.. +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 58999999887420 01358999999999999999999999999999999999876 5689999999876
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHH-----HHHHHHHHHHHc--CCCcccccccCCCC
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET-----RKMFIDEVMELV--ELNPLRQSLVGLPG 1004 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~-----~~~~v~~~l~~l--~l~~~~~~~~~~~~ 1004 (1156)
.. ..+++.+|||+|++.+++ .||+||+.|+.... ...+. ....++++++.+ ++....+..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~----- 153 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGET----- 153 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----
Confidence 43 234567999999998887 59999998853211 11011 122345667777 666665555
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+..|||||||||+|||||+.+|+||||||||+|||+.++..|++.|+++.+ +|+|||++||+++ ..+.||++++|++
T Consensus 154 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~ 231 (271)
T 2ixe_A 154 GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE 231 (271)
T ss_dssp GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 346999999999999999999999999999999999999999999999864 4999999999975 3456999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 232 -G~i~~~g~~ 240 (271)
T 2ixe_A 232 -GSVCEQGTH 240 (271)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 688888874
No 65
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.1e-38 Score=355.81 Aligned_cols=208 Identities=28% Similarity=0.313 Sum_probs=168.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCC--CcC---ccceEEEEcCCCCCC--
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD--EFV---PQRTAAYISQHDNHI-- 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~--~~~---~~~~~~yv~Q~d~~~-- 238 (1156)
.+|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.++
T Consensus 35 ~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (279)
T 2ihy_A 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQ 111 (279)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSC
T ss_pred EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccC
Confidence 4999999999999999999999999999999999999998 999999999875 322 245799999986432
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||+||+.|+..... + .+.. + ..+....++.+++.+||.+..+..++
T Consensus 112 ~~ltv~enl~~~~~~~~-~-~~~~--------------~--------------~~~~~~~~~~~l~~~gl~~~~~~~~~- 160 (279)
T 2ihy_A 112 EGERVIDVVISGAFKSI-G-VYQD--------------I--------------DDEIRNEAHQLLKLVGMSAKAQQYIG- 160 (279)
T ss_dssp TTSBHHHHHHTTC-------------------------C--------------CHHHHHHHHHHHHHTTCGGGTTSBGG-
T ss_pred CCCCHHHHHHhhhhhcc-c-cccC--------------C--------------cHHHHHHHHHHHHHcCChhHhcCChh-
Confidence 35699999998632100 0 0000 0 00112346778999999887776654
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEE-EEEecChhhHHhhcCeEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV-ISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~i-i~i~q~~~~~~~~~D~iil 397 (1156)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++... +.|+. |.++|+..++.++||+|++
T Consensus 161 ----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~ 235 (279)
T 2ihy_A 161 ----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILL 235 (279)
T ss_dssp ----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEE
T ss_pred ----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEE
Confidence 59999999999999999999999999999999999999999999988654 55551 5578888899999999999
Q ss_pred EcCCeEEEEcChhHH
Q 001108 398 LSDGQIVYQGPRELV 412 (1156)
Q Consensus 398 L~~G~iv~~G~~~~~ 412 (1156)
|++|++++.|+++++
T Consensus 236 l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 236 LKDGQSIQQGAVEDI 250 (279)
T ss_dssp EETTEEEEEEEHHHH
T ss_pred EECCEEEEECCHHHH
Confidence 999999999998876
No 66
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.9e-38 Score=346.98 Aligned_cols=200 Identities=27% Similarity=0.403 Sum_probs=160.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1156)
..+|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 35999999999999999999999999999999999999998 9999999998865432 357999999987775 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-------cccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-------CADT 314 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-------~~dt 314 (1156)
||+||+.|+.. . ...+ .++.+++.+|+.+ ..++
T Consensus 98 tv~enl~~~~~--~--~~~~------------------------------------~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANP--G--MSVE------------------------------------KVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCT--T--CCHH------------------------------------HHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCC--C--CCHH------------------------------------HHHHHHHHhChHHHHHhCcchhhh
Confidence 99999987531 0 0000 1122334444433 2344
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.++. ....|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. .+.| ||.++|+...+ ..||+
T Consensus 138 ~~~~-~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~t-viivtH~~~~~-~~~d~ 212 (247)
T 2ff7_A 138 IVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRT-VIIIAHRLSTV-KNADR 212 (247)
T ss_dssp BCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSE-EEEECSSGGGG-TTSSE
T ss_pred hhhC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCE-EEEEeCCHHHH-HhCCE
Confidence 4443 356799999999999999999999999999999999999999999999873 3445 45567776666 45999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001108 395 IILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1156)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
No 67
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.2e-38 Score=347.65 Aligned_cols=204 Identities=23% Similarity=0.292 Sum_probs=162.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK--LDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~--~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|||+++++|++++|+|||||||||||++|+|. ++|+ +|+|.++|.++..... ++.++||+|++.+++
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 93 (250)
T 2d2e_A 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEVP 93 (250)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CC
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCcccc
Confidence 599999999999999999999999999999999998 6776 9999999998865432 234899999999999
Q ss_pred CCCHHHHHHHHhhh-cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCC-ccccccccc
Q 001108 240 EMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL-DVCADTMVG 317 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~vg 317 (1156)
.+||+||+.|+... .+.... ..+....++.+++.+|| .+..++.+
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~gl~~~~~~~~~- 140 (250)
T 2d2e_A 94 GVTIANFLRLALQAKLGREVG--------------------------------VAEFWTKVKKALELLDWDESYLSRYL- 140 (250)
T ss_dssp SCBHHHHHHHHHHHHHTSCCC--------------------------------HHHHHHHHHHHHHHHTCCGGGGGSBT-
T ss_pred CCCHHHHHHHHHHhhccccCC--------------------------------HHHHHHHHHHHHHHcCCChhHhcCCc-
Confidence 99999999986521 110000 00112345678999999 46666554
Q ss_pred ccccCC-CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh-cCeE
Q 001108 318 DEMIRG-ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDI 395 (1156)
Q Consensus 318 ~~~~~~-LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~-~D~i 395 (1156)
.. |||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.. . +++||.++|+..++..+ ||+|
T Consensus 141 ----~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~~d~v 214 (250)
T 2d2e_A 141 ----NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-P-NFGALVITHYQRILNYIQPDKV 214 (250)
T ss_dssp ----TCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-T-TCEEEEECSSSGGGGTSCCSEE
T ss_pred ----ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCCEE
Confidence 35 999999999999999999999999999999999999999999998743 3 45556678888888887 5999
Q ss_pred EEEcCCeEEEEcChhH
Q 001108 396 ILLSDGQIVYQGPREL 411 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~ 411 (1156)
++|++|++++.|+++.
T Consensus 215 ~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 215 HVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEETTEEEEEESHHH
T ss_pred EEEECCEEEEEeCHHH
Confidence 9999999999999873
No 68
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=8.9e-39 Score=393.61 Aligned_cols=258 Identities=23% Similarity=0.401 Sum_probs=197.6
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++....++|+.++++.+++ ..+..+....+....+++++||++.+..
T Consensus 304 ~~~~~~s~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 351 (578)
T 4a82_A 304 LTQSFASMDRVFQLIDEDYD-----IKNGVGAQPIEIKQGRIDIDHVSFQYND--------------------------- 351 (578)
T ss_dssp HHHHHHHHHHHHHHHTCCCS-----SCCCTTCCCCCCCSCCEEEEEEEECSCS---------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCc-----ccCCCCccccCCCCCeEEEEEEEEEcCC---------------------------
Confidence 56778888999988876654 1111111112233467999999988631
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
...++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 352 -----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~ 423 (578)
T 4a82_A 352 -----NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQD 423 (578)
T ss_dssp -----SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSS
T ss_pred -----CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCC
Confidence 1234899999999999999999999999999999999999998 9999999999876543 4679999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+++. ||+||+.|+... ...+...++++. .++ +.. ...+++..||
T Consensus 424 ~~l~~~-tv~eni~~~~~~----~~~~~~~~~~~~---~~~------------------------~~~--~~~lp~g~~t 469 (578)
T 4a82_A 424 NILFSD-TVKENILLGRPT----ATDEEVVEAAKM---ANA------------------------HDF--IMNLPQGYDT 469 (578)
T ss_dssp CCCCSS-BHHHHHGGGCSS----CCHHHHHHHHHH---TTC------------------------HHH--HHTSTTGGGC
T ss_pred CccCcc-cHHHHHhcCCCC----CCHHHHHHHHHH---hCc------------------------HHH--HHhCcchhhh
Confidence 877754 999999886421 111112222111 100 011 2357778899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+. .|||||||||+|||||+.+|++++|||||||||+.++..+.+.|+++. .++|+|+ ++|+...+ +.||+
T Consensus 470 ~~~~~g~-~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~~~-~~~d~ 544 (578)
T 4a82_A 470 EVGERGV-KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLI-VAHRLSTI-THADK 544 (578)
T ss_dssp BCCGGGT-TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEE-ECSSGGGT-TTCSE
T ss_pred hhccCCC-cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHH-HcCCE
Confidence 9997654 699999999999999999999999999999999999999999998763 3455544 67776665 56999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++++|+++++.+
T Consensus 545 i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 545 IVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999865
No 69
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3.3e-38 Score=351.13 Aligned_cols=209 Identities=22% Similarity=0.370 Sum_probs=164.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1156)
..+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 35899999999999999999999999999999999999998 9999999998754332 357999999987776 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHc--CCccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDE 319 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 319 (1156)
||+|||.|+.... .. .+...+... ...++.+++.+ ||....+.
T Consensus 108 tv~enl~~~~~~~--~~-~~~~~~~~~---------------------------~~~~~~~l~~l~~gl~~~~~~----- 152 (271)
T 2ixe_A 108 SFRENIAYGLTRT--PT-MEEITAVAM---------------------------ESGAHDFISGFPQGYDTEVGE----- 152 (271)
T ss_dssp BHHHHHHTTCSSC--CC-HHHHHHHHH---------------------------HHTCHHHHHHSTTGGGSBCCG-----
T ss_pred cHHHHHhhhcccC--Ch-HHHHHHHHH---------------------------HHhHHHHHHhhhcchhhhhcC-----
Confidence 9999999864211 10 010111000 01234566777 66554443
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.... +++||.++|+...+. .||+|++|+
T Consensus 153 ~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-g~tviivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA-SRTVLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp GGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTT-TSEEEEECSCHHHHT-TCSEEEEEE
T ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 345799999999999999999999999999999999999999999999864322 445555788877765 599999999
Q ss_pred CCeEEEEcChhHHHH
Q 001108 400 DGQIVYQGPRELVLE 414 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1156)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988754
No 70
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=6.4e-39 Score=351.88 Aligned_cols=210 Identities=27% Similarity=0.403 Sum_probs=173.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|+ +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence 57888888773 12358999999999999999999999999999999999876 45899999998764
Q ss_pred h---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccccccc-------CCCCC
Q 001108 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-------GLPGV 1005 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~-------~~~~~ 1005 (1156)
. ..+++.+||++|++.+++ .||+||+.|+.. .... ++.++++++.+++.+..+... +.+ +
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~-~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE----GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT----SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc----CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccC-c
Confidence 3 234567999999998877 599999987521 1112 234678899999987765542 222 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..|||||||||+|||||+.+|+||+|||||+|||+.++..+++.|+++. +|+|||++||+++ ..+.||++++|++ |
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEEC-C
Confidence 5799999999999999999999999999999999999999999999987 6999999999975 3456999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 214 ~i~~~g~~ 221 (243)
T 1mv5_A 214 QITGSGKH 221 (243)
T ss_dssp EECCCSCH
T ss_pred EEEEeCCH
Confidence 88887764
No 71
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.6e-37 Score=340.46 Aligned_cols=196 Identities=16% Similarity=0.227 Sum_probs=164.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.+ ++.++||+|++.+++.+||+|
T Consensus 19 ~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~e 85 (253)
T 2nq2_C 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVLD 85 (253)
T ss_dssp EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHHH
T ss_pred eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHHH
Confidence 5999999999999999999999999999999999999998 999982 356999999998888999999
Q ss_pred HHHHHhhhc-CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 246 TLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 246 ~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
|+.|+.... +...... .+....++.+++.+||.+..+..+ ..|
T Consensus 86 nl~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 129 (253)
T 2nq2_C 86 IVLMGRSTHINTFAKPK-------------------------------SHDYQVAMQALDYLNLTHLAKREF-----TSL 129 (253)
T ss_dssp HHHGGGGGGSCTTCCCC-------------------------------HHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred HHHHhhhhhcccccCCC-------------------------------HHHHHHHHHHHHHcCChHHhcCCh-----hhC
Confidence 999874321 1000000 001124577899999988777654 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ ..+++||.++|+..++.++||+|++|++|+ +
T Consensus 130 SgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~ 207 (253)
T 2nq2_C 130 SGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ-SQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F 207 (253)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHH-TSCCEEEEEESCHHHHHHHCSEEEEEETTE-E
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E
Confidence 99999999999999999999999999999999999999999998765 324455667889899999999999999999 9
Q ss_pred EEcChhHH
Q 001108 405 YQGPRELV 412 (1156)
Q Consensus 405 ~~G~~~~~ 412 (1156)
+.|+++++
T Consensus 208 ~~g~~~~~ 215 (253)
T 2nq2_C 208 KFGETRNI 215 (253)
T ss_dssp EEEEHHHH
T ss_pred ecCCHHHH
Confidence 99998876
No 72
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.1e-38 Score=390.43 Aligned_cols=258 Identities=22% Similarity=0.329 Sum_probs=195.5
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++....++|+.++++..++ ..+.......+.+...++++||++.+..
T Consensus 306 ~~~~~~s~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 353 (587)
T 3qf4_A 306 IVRASASAKRVLEVLNEKPA-----IEEADNALALPNVEGSVSFENVEFRYFE--------------------------- 353 (587)
T ss_dssp HHHHHHHHHHHHHHHHCCCS-----CCCCTTCBCCSCCCCCEEEEEEEECSSS---------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCc-----cCCCCCccccCCCCCcEEEEEEEEEcCC---------------------------
Confidence 45677788888887765543 1111111112233457999999988631
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
...++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 354 -----~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~ 425 (587)
T 3qf4_A 354 -----NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQE 425 (587)
T ss_dssp -----SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSS
T ss_pred -----CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCC
Confidence 1234899999999999999999999999999999999999998 9999999999876543 4679999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+++ .||+||+.|+... ...+...+..+ ..++ +.. ...|++..||
T Consensus 426 ~~lf~-~tv~eni~~~~~~----~~~~~~~~~~~---~~~~------------------------~~~--i~~l~~g~~~ 471 (587)
T 3qf4_A 426 TVLFS-GTIKENLKWGRED----ATDDEIVEAAK---IAQI------------------------HDF--IISLPEGYDS 471 (587)
T ss_dssp CCCCS-EEHHHHHTTTCSS----CCHHHHHHHHH---HTTC------------------------HHH--HHTSSSGGGC
T ss_pred CcCcC-ccHHHHHhccCCC----CCHHHHHHHHH---HhCc------------------------HHH--HHhcccchhh
Confidence 87775 5999999886421 11111111111 1110 111 2357778899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+. .|||||||||+|||||+.+|++|+||||||+||+.++..|.+.|+++. .++|+ +.++|+...+ ..||+
T Consensus 472 ~~~~~~~-~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tv-i~itH~l~~~-~~~d~ 546 (587)
T 3qf4_A 472 RVERGGR-NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTT-FIITQKIPTA-LLADK 546 (587)
T ss_dssp EECSSSC-SSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEE-EEEESCHHHH-TTSSE
T ss_pred HhcCCCC-CcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEE-EEEecChHHH-HhCCE
Confidence 9987654 699999999999999999999999999999999999999999998863 34454 4467776654 68999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++++|+++++.+
T Consensus 547 i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 547 ILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999875
No 73
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.6e-37 Score=345.02 Aligned_cols=220 Identities=24% Similarity=0.286 Sum_probs=171.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (1156)
++|+|||++|++|++++|+|||||||||||++|+|.. +|+ +|+|.++|.++..... ++.++||+|++.+++
T Consensus 34 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~ 110 (267)
T 2zu0_C 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIP 110 (267)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCT
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCccccc
Confidence 4999999999999999999999999999999999984 566 9999999998754432 234999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-ccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGD 318 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 318 (1156)
.+||+|++.+...... . ..+. +... ..+....++++++.+||+ ...+..++
T Consensus 111 ~~tv~e~~~~~~~~~~-------------~--~~~~-~~~~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~~- 162 (267)
T 2zu0_C 111 GVSNQFFLQTALNAVR-------------S--YRGQ-ETLD-----------RFDFQDLMEEKIALLKMPEDLLTRSVN- 162 (267)
T ss_dssp TCBHHHHHHHHHHHHH-------------H--GGGC-CCCC-----------HHHHHHHHHHHHHHTTCCTTTTTSBTT-
T ss_pred cccHHHHHHHHHHhhh-------------h--hhcc-ccCC-----------HHHHHHHHHHHHHHcCCChhHhcCCcc-
Confidence 9999999987541100 0 0000 0000 001123467789999996 45554432
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh-cCeEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDIIL 397 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~-~D~iil 397 (1156)
..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.. . +++||.++|+..++..+ ||+|++
T Consensus 163 ---~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~~~~~~d~v~~ 237 (267)
T 2zu0_C 163 ---VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-G-KRSFIIVTHYQRILDYIKPDYVHV 237 (267)
T ss_dssp ---TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-S-SCEEEEECSSGGGGGTSCCSEEEE
T ss_pred ---cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c-CCEEEEEeeCHHHHHhhcCCEEEE
Confidence 14999999999999999999999999999999999999999999988642 3 45566678888887776 899999
Q ss_pred EcCCeEEEEcChhHHHHHHHhcCCC
Q 001108 398 LSDGQIVYQGPRELVLEFFASMGFR 422 (1156)
Q Consensus 398 L~~G~iv~~G~~~~~~~~f~~~G~~ 422 (1156)
|++|++++.|+++++.. ++..||.
T Consensus 238 l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 238 LYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EETTEEEEEECTTHHHH-HHTTTCT
T ss_pred EECCEEEEEcCHHHHhh-hhhcchh
Confidence 99999999999988753 4455543
No 74
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.1e-37 Score=342.41 Aligned_cols=206 Identities=17% Similarity=0.206 Sum_probs=172.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|+.. ...+.+|+||||+|+ |+++||+||||||||||+++|+|.. + .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECc
Confidence 5788898887410 011569999999999 9999999999999999999999986 4 5899999998754
Q ss_pred hhcccceEE-EeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHH
Q 001108 936 QETFARISG-YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~~~~~~~~g-yv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqr 1013 (1156)
....++.+| |++|++.+ .+||+||+.+...++ ... ++.++++++.++|. +..++.+ .+||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKL-----YKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCCh-----hhCCHHHH
Confidence 211145689 99999877 899999999876443 111 34578899999998 8777664 46999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC-eEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d-~v~~l~~Gg~~~~~g~ 1092 (1156)
||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ |||++||+++ .+.+.|| ++++|++ |++++.|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecC
Confidence 999999999999999999999999999999999999998853 9999999986 3667899 9999986 68888887
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 210 ~ 210 (263)
T 2pjz_A 210 V 210 (263)
T ss_dssp H
T ss_pred H
Confidence 4
No 75
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.4e-37 Score=344.25 Aligned_cols=211 Identities=24% Similarity=0.369 Sum_probs=170.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|+.. ..+.+|+||||+|++|+++||+||||||||||+++|+|... + +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 48899999887421 01358999999999999999999999999999999999875 4 79999999876
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPG 1004 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~~ 1004 (1156)
.. ..+++.+||++|++.+++ .||+||+.|+.. ... ++.+.++++.+++.+.. ++..+..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~- 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNK- 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSS-
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCC-
Confidence 43 234567999999998876 699999987421 111 23456777777775543 2222222
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++||+++. + +.||++++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~- 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK- 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999864 8999999999873 3 56999999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 229 G~i~~~g~~ 237 (260)
T 2ghi_A 229 GKIVEKGTH 237 (260)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 688888874
No 76
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.3e-37 Score=339.93 Aligned_cols=194 Identities=20% Similarity=0.204 Sum_probs=165.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEE-EEcCCCCCCCCCCH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAA-YISQHDNHIGEMTV 243 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 243 (1156)
+.+|+|+|++++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|.++.....++.++ ||+|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 359999999999 9999999999999999999999999 98 999999998864321246799 99998766 8999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-ccccccccccccC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIR 322 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 322 (1156)
+||+.|+..... . ....++.+++.+||. +..+..+ .
T Consensus 91 ~enl~~~~~~~~--~------------------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~ 127 (263)
T 2pjz_A 91 NDIVYLYEELKG--L------------------------------------DRDLFLEMLKALKLGEEILRRKL-----Y 127 (263)
T ss_dssp HHHHHHHHHHTC--C------------------------------------CHHHHHHHHHHTTCCGGGGGSBG-----G
T ss_pred HHHHHHhhhhcc--h------------------------------------HHHHHHHHHHHcCCChhHhcCCh-----h
Confidence 999998653210 0 012356778899998 7766554 4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC-eEEEEcCC
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD-DIILLSDG 401 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D-~iilL~~G 401 (1156)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++. . +|+.++|+..++.++|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~--tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K--EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S--EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C--cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 699999999999999999999999999999999999999999998742 2 55667888888899999 99999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
No 77
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-38 Score=344.33 Aligned_cols=201 Identities=23% Similarity=0.343 Sum_probs=163.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (1156)
++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++ .|
T Consensus 16 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~t 91 (243)
T 1mv5_A 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GT 91 (243)
T ss_dssp CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EE
T ss_pred ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-cc
Confidence 4899999999999999999999999999999999999998 999999999876533 2467999999987776 59
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc-------cc
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD-------TM 315 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d-------t~ 315 (1156)
|+||+.|+.... .. ...++.+++.+|+.+..+ +.
T Consensus 92 v~enl~~~~~~~---~~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~~ 132 (243)
T 1mv5_A 92 IRENLTYGLEGD---YT------------------------------------DEDLWQVLDLAFARSFVENMPDQLNTE 132 (243)
T ss_dssp HHHHTTSCTTSC---SC------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGGCE
T ss_pred HHHHHhhhccCC---CC------------------------------------HHHHHHHHHHhChHHHHHhCccchhch
Confidence 999998753110 00 011344566677765443 33
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
++. ....|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. .+.| ||.++|+...+ ..||+|
T Consensus 133 ~~~-~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~t-vi~vtH~~~~~-~~~d~v 207 (243)
T 1mv5_A 133 VGE-RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRT-TLVIAHRLSTI-VDADKI 207 (243)
T ss_dssp EST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSE-EEEECCSHHHH-HHCSEE
T ss_pred hcc-CcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCE-EEEEeCChHHH-HhCCEE
Confidence 433 356799999999999999999999999999999999999999999999874 3445 45567776665 569999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001108 396 ILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1156)
++|++|++++.|+++++..
T Consensus 208 ~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 208 YFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEETTEECCCSCHHHHHH
T ss_pred EEEECCEEEEeCCHHHHHh
Confidence 9999999999999988754
No 78
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3e-37 Score=381.51 Aligned_cols=255 Identities=22% Similarity=0.339 Sum_probs=192.3
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcce-EEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE-VRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1156)
.++....++|+.++++.+++ ..+.......+.+..+ ++++||++.+..
T Consensus 305 ~~~~~~s~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~~i~~~~v~~~y~~-------------------------- 353 (595)
T 2yl4_A 305 LMKGLGAGGRLWELLEREPK-----LPFNEGVILNEKSFQGALEFKNVHFAYPA-------------------------- 353 (595)
T ss_dssp HHHHHHHHHHHHHHHTCCCS-----SCSSCSBCCCTTTCCCCEEEEEEEEECSS--------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCc-----cCCCCCCCCCcCCCCCeEEEEEEEEEeCC--------------------------
Confidence 45677788888888765543 1000000000112356 999999998721
Q ss_pred hcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcC
Q 001108 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1156)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q 233 (1156)
+ ...++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|
T Consensus 354 ----~-~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q 425 (595)
T 2yl4_A 354 ----R-PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQ 425 (595)
T ss_dssp ----C-TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECS
T ss_pred ----C-CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEcc
Confidence 1 1235999999999999999999999999999999999999998 9999999999876543 467999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHc-------
Q 001108 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL------- 306 (1156)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l------- 306 (1156)
++.+++ .||+||+.|+..... ....+ .++++++.+
T Consensus 426 ~~~l~~-~tv~eni~~~~~~~~-~~~~~------------------------------------~~~~~~~~~~l~~~~~ 467 (595)
T 2yl4_A 426 EPILFS-CSIAENIAYGADDPS-SVTAE------------------------------------EIQRVAEVANAVAFIR 467 (595)
T ss_dssp SCCCCS-SBHHHHHHTTSSSTT-TSCHH------------------------------------HHHHHHHHTTCHHHHH
T ss_pred CCcccC-CCHHHHHhhcCCCcc-ccCHH------------------------------------HHHHHHHHcCCHHHHH
Confidence 987776 699999998642100 00111 112223333
Q ss_pred CCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 001108 307 GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (1156)
Q Consensus 307 gL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~ 386 (1156)
.+++..||.+|+.+ ..|||||||||+|||||+.+|++++||||||+||+.++..+.+.|+++.+ ++|+| .++|+..
T Consensus 468 ~l~~g~~~~~~~~~-~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi-~itH~~~ 543 (595)
T 2yl4_A 468 NFPQGFNTVVGEKG-VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVL-VIAHRLS 543 (595)
T ss_dssp TSSSGGGCBCSSSS-CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEE-EECCCHH
T ss_pred hCcccccccccCCC-CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEE-EEecCHH
Confidence 45677899998764 46999999999999999999999999999999999999999999998643 45544 4677766
Q ss_pred hHHhhcCeEEEEcCCeEEEEcChhHHHH
Q 001108 387 ETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 387 ~~~~~~D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
.+ +.||+|++|++|++++.|+++++.+
T Consensus 544 ~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 544 TI-KNANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp HH-HHSSEEEEEETTEEEEEECSCC---
T ss_pred HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 55 5699999999999999999998753
No 79
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.9e-37 Score=337.71 Aligned_cols=196 Identities=23% Similarity=0.335 Sum_probs=167.9
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCCH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 243 (1156)
+|+|+|+.+++|++++|+|||||||||||++|+|.++| .|+|.++|.++..... ++.++||+|++.+++.+||
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC----CeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 89999999999999999999999999999999999987 2999999998754332 3569999999888999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.|+.. ... . ...++.+++.+||.+..+..+ ..
T Consensus 91 ~e~l~~~~~-~~~----~----------------------------------~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (249)
T 2qi9_C 91 WHYLTLHQH-DKT----R----------------------------------TELLNDVAGALALDDKLGRST-----NQ 126 (249)
T ss_dssp HHHHHTTCS-STT----C----------------------------------HHHHHHHHHHTTCGGGTTSBG-----GG
T ss_pred HHHHHHhhc-cCC----c----------------------------------HHHHHHHHHHcCChhHhcCCh-----hh
Confidence 999987521 100 0 123566788999988777554 46
Q ss_pred CChhHHHHHHHHHHHhcCCc-------cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 324 ISGGQKKRVTTGEMMVGPAL-------ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~-------vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
|||||||||+||+||+.+|+ +|||||||+|||+.++..+++.|+++.+ . +++||.++|+...+.+++|+++
T Consensus 127 LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~~~~~d~v~ 204 (249)
T 2qi9_C 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ-Q-GLAIVMSSHDLNHTLRHAHRAW 204 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHHHHHCSEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999999 9999999999999999999999998764 3 4455668889899999999999
Q ss_pred EEcCCeEEEEcChhHH
Q 001108 397 LLSDGQIVYQGPRELV 412 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (1156)
+|++|++++.|+++++
T Consensus 205 ~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 205 LLKGGKMLASGRREEV 220 (249)
T ss_dssp EEETTEEEEEEEHHHH
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999998876
No 80
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=6.6e-37 Score=338.76 Aligned_cols=200 Identities=22% Similarity=0.320 Sum_probs=160.6
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1156)
.++|+|||+++++|++++|+|||||||||||++|+|.+++ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 3589999999999999999999999999999999999874 7999999998754332 367999999987775 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHc-------CCcccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-------GLDVCADT 314 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 314 (1156)
||+||+.|+.. . ...+. +...++.+ ++++..||
T Consensus 108 tv~enl~~~~~-~---~~~~~------------------------------------~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL-D---ATDEE------------------------------------VIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT-T---CCHHH------------------------------------HHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC-C---CCHHH------------------------------------HHHHHHHhCCHHHHHhccccccc
Confidence 99999988531 0 00000 11122222 45666777
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.++. .+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. .+.| ||.++|+...+ ..||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~--~~~t-viivtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR--KNRT-LIIIAHRLSTI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT--TTSE-EEEECSSGGGS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCE-EEEEcCCHHHH-HhCCE
Confidence 7764 356799999999999999999999999999999999999999999999874 3444 55567776665 46999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|++++.|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988754
No 81
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.8e-38 Score=386.97 Aligned_cols=256 Identities=23% Similarity=0.352 Sum_probs=195.4
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++....++|+.++++.+++. +.......+.+..+++++||++.+..
T Consensus 320 ~~~~~~s~~ri~~~l~~~~~~------~~~~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 366 (598)
T 3qf4_B 320 IQMALASAERIFEILDLEEEK------DDPDAVELREVRGEIEFKNVWFSYDK--------------------------- 366 (598)
T ss_dssp HHHHHHHHHHHHHHTTSCCCC------CCSSCCCCCSCCCCEEEEEEECCSSS---------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCCC------CCCCCCCCCCCCCeEEEEEEEEECCC---------------------------
Confidence 567788899999988766541 10111112223457999999987621
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
..++|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 367 ------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~ 437 (598)
T 3qf4_B 367 ------KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQD 437 (598)
T ss_dssp ------SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTT
T ss_pred ------CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCC
Confidence 124899999999999999999999999999999999999998 9999999999876543 4679999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.++ +.||+||+.++... ...+...++.+ ..+ .+.. .-.+++..||
T Consensus 438 ~~lf-~~tv~eni~~~~~~----~~~~~~~~~~~---~~~------------------------~~~~--~~~~~~g~~t 483 (598)
T 3qf4_B 438 TILF-STTVKENLKYGNPG----ATDEEIKEAAK---LTH------------------------SDHF--IKHLPEGYET 483 (598)
T ss_dssp CCCC-SSBHHHHHHSSSTT----CCTTHHHHHTT---TTT------------------------CHHH--HHTSTTGGGC
T ss_pred Cccc-cccHHHHHhcCCCC----CCHHHHHHHHH---HhC------------------------CHHH--HHhccccccc
Confidence 8766 46999999986321 11111111110 000 0111 2246778899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+. .|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++. .++|+|+ ++|+...+ ..||+
T Consensus 484 ~~~~~g~-~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~~~-~~~d~ 558 (598)
T 3qf4_B 484 VLTDNGE-DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSII-IAHRLNTI-KNADL 558 (598)
T ss_dssp BCHHHHT-TSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEE-ESCCTTHH-HHCSE
T ss_pred hhcCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHH-HcCCE
Confidence 9997654 699999999999999999999999999999999999999999999863 3455554 66666655 55999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++++|+++++.+
T Consensus 559 i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 559 IIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp EEEECSSSEEECSCHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999865
No 82
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=6.7e-37 Score=377.48 Aligned_cols=257 Identities=23% Similarity=0.378 Sum_probs=193.8
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++....++|+.++++.+++. .+ .....+.....++++||++.+..
T Consensus 308 ~~~~~~a~~ri~~~l~~~~~~-----~~--~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 353 (582)
T 3b5x_A 308 FQRGMAACQTLFGLMDLETER-----DN--GKYEAERVNGEVDVKDVTFTYQG--------------------------- 353 (582)
T ss_pred HHHHHHHHHHHHHHHcCCCcC-----CC--CCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 567888899999888766541 10 01111112356999999998731
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
...++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 354 -----~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~ 425 (582)
T 3b5x_A 354 -----KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQN 425 (582)
T ss_pred -----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCC
Confidence 0134899999999999999999999999999999999999998 9999999998865432 4679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+++ .||+||+.|+.. . ....+...++.+. .+ .+..++ .+++..||
T Consensus 426 ~~l~~-~tv~eni~~~~~-~--~~~~~~~~~~~~~---~~------------------------l~~~~~--~~p~g~~t 472 (582)
T 3b5x_A 426 VHLFN-DTIANNIAYAAE-G--EYTREQIEQAARQ---AH------------------------AMEFIE--NMPQGLDT 472 (582)
T ss_pred Ccccc-ccHHHHHhccCC-C--CCCHHHHHHHHHH---CC------------------------CHHHHH--hCcccccc
Confidence 87776 599999998641 0 1111111111110 00 011111 34567789
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ ..|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++. .++|+|+ ++|+...+ +.||+
T Consensus 473 ~~~~~~-~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~-itH~~~~~-~~~d~ 547 (582)
T 3b5x_A 473 VIGENG-TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ--KNKTVLV-IAHRLSTI-EQADE 547 (582)
T ss_pred hhcCCC-CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHH-HhCCE
Confidence 998764 5799999999999999999999999999999999999999999999864 3455555 56665554 57999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998854
No 83
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=359.01 Aligned_cols=199 Identities=24% Similarity=0.243 Sum_probs=161.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1156)
..+|+|||++|++||+++|+|||||||||||++|+|+++ + +|+|.++|+++....+ ++.++||+|++.+|+ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 348999999999999999999999999999999999987 6 8999999999877654 368999999988876 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc-------
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT------- 314 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------- 314 (1156)
||+||+.+... .. ...++.+++.+||.+..+.
T Consensus 109 tv~enl~~~~~-----~~------------------------------------~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAA-----HS------------------------------------DQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCC-----SC------------------------------------HHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhccc-----cC------------------------------------HHHHHHHHHHhCCHHHHhhccccccc
Confidence 99999964211 00 0123445667777654443
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+++. ...|||||||||+|||||+.+|++||||||||+||+.++.++.+.|+++. .+ +++|.++|+. +....||+
T Consensus 148 ~i~~~-g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~-~tvi~vtHd~-e~~~~aDr 222 (390)
T 3gd7_A 148 VLVDG-GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--AD-CTVILCEARI-EAMLECDQ 222 (390)
T ss_dssp EECTT-TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TT-SCEEEECSSS-GGGTTCSE
T ss_pred ccccc-cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CC-CEEEEEEcCH-HHHHhCCE
Confidence 33332 23599999999999999999999999999999999999999999998742 33 4455567775 56678999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+|++.|+++++..
T Consensus 223 i~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 223 FLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEEETTEEEEESSHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998854
No 84
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=359.11 Aligned_cols=211 Identities=20% Similarity=0.282 Sum_probs=176.7
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++++|++++|+. ++..+|+||||+|++||+++|+|||||||||||++|+|... .+|+|.++|.+
T Consensus 18 ~~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~ 83 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVS 83 (390)
T ss_dssp CCEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCB
T ss_pred CeEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEE
Confidence 46899999998842 23468999999999999999999999999999999999864 57999999988
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCC------CC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL------PG 1004 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~------~~ 1004 (1156)
+.. ..+++.+|||+|++.+++ +||+||+.+.. .. .++.++++++.++|.++.++.+.. ..
T Consensus 84 i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~ 152 (390)
T 3gd7_A 84 WDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152 (390)
T ss_dssp TTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTT
T ss_pred CCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------cc----CHHHHHHHHHHhCCHHHHhhcccccccccccc
Confidence 653 234577999999999987 69999996421 11 134578899999998877766431 11
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
...|||||||||+|||||+.+|+||||||||||||+.++..+++.|+++. .|+|||+++|+++ ....||++++|++
T Consensus 153 g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~- 228 (390)
T 3gd7_A 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE- 228 (390)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-
Confidence 23499999999999999999999999999999999999999999999864 5899999999975 4567999999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 229 G~i~~~g~~ 237 (390)
T 3gd7_A 229 NKVRQYDSI 237 (390)
T ss_dssp TEEEEESSH
T ss_pred CEEEEECCH
Confidence 799999975
No 85
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=7.2e-37 Score=377.19 Aligned_cols=257 Identities=22% Similarity=0.377 Sum_probs=192.1
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++....++|+.++++.+++. .+ .....+.....++++||++.+..
T Consensus 308 ~~~~~~a~~ri~~~l~~~~~~-----~~--~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 353 (582)
T 3b60_A 308 FQRGMAACQTLFAILDSEQEK-----DE--GKRVIDRATGDLEFRNVTFTYPG--------------------------- 353 (582)
T ss_dssp HHHHHHHHHHHHHHHHSCCSC-----CC--CCBCCSCCCCCEEEEEEEECSSS---------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCCc-----cC--CCCCCCCCCCcEEEEEEEEEcCC---------------------------
Confidence 456777888888777655430 00 01111112346999999987621
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
+ .+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 354 ---~--~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~ 425 (582)
T 3b60_A 354 ---R--EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQN 425 (582)
T ss_dssp ---S--SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSS
T ss_pred ---C--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccC
Confidence 1 134899999999999999999999999999999999999998 9999999999876543 4679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+++ .||+||+.|+.. . ....+...++.+ ..+ .+..++ .+++..||
T Consensus 426 ~~l~~-~tv~eni~~~~~-~--~~~~~~~~~~l~---~~~------------------------l~~~~~--~~p~g~~~ 472 (582)
T 3b60_A 426 VHLFN-DTVANNIAYART-E--EYSREQIEEAAR---MAY------------------------AMDFIN--KMDNGLDT 472 (582)
T ss_dssp CCCCS-SBHHHHHHTTTT-S--CCCHHHHHHHHH---TTT------------------------CHHHHH--HSTTGGGS
T ss_pred CcCCC-CCHHHHHhccCC-C--CCCHHHHHHHHH---HcC------------------------CHHHHH--hccccccc
Confidence 88776 599999998641 0 111111111111 000 011111 24567889
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ ..|||||||||+|||||+.+|++++||||||+||+.++..+.+.|+++. .++|+|+ ++|+...+ +.||+
T Consensus 473 ~~~~~~-~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~-itH~~~~~-~~~d~ 547 (582)
T 3b60_A 473 IIGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLV-IAHRLSTI-EQADE 547 (582)
T ss_dssp BCCTTS-CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH--TTSEEEE-ECSCGGGT-TTCSE
T ss_pred cccCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEE-EeccHHHH-HhCCE
Confidence 998764 5799999999999999999999999999999999999999999999874 3455544 66666554 57999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999998864
No 86
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7.3e-38 Score=416.53 Aligned_cols=261 Identities=20% Similarity=0.298 Sum_probs=201.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.+......+|+.++++..++ ..+............+|+|+||++.|..
T Consensus 1041 ~~~~~~a~~ri~~~l~~~~~-----~~~~~~~~~~~~~~g~I~f~nVsf~Y~~--------------------------- 1088 (1321)
T 4f4c_A 1041 YAKATFAGGIIFGMLRKISK-----IDSLSLAGEKKKLYGKVIFKNVRFAYPE--------------------------- 1088 (1321)
T ss_dssp HHHHHHHHHHHHHHHHCCCS-----SCTTCCCSBCCCCCCCEEEEEEEECCTT---------------------------
T ss_pred HHHHHHHHHHHHHHhhCccc-----CCCccCCCCCCCCCCeEEEEEEEEeCCC---------------------------
Confidence 45677788888887766554 1111111112223458999999998731
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
+...++|+|||++|+|||.+||+||||||||||+++|.|+++|+ +|+|++||+++.+... |+.++||||+
T Consensus 1089 ----~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qd 1161 (1321)
T 4f4c_A 1089 ----RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQE 1161 (1321)
T ss_dssp ----SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSS
T ss_pred ----CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCC
Confidence 12345999999999999999999999999999999999999998 9999999999988764 5789999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+| +.||||||.|+..-. ....+.+.++++.. ++ +.. +-.|+++.||
T Consensus 1162 p~LF-~gTIreNI~~gld~~--~~sd~ei~~Al~~a---~l------------------------~~~--I~~Lp~GldT 1209 (1321)
T 4f4c_A 1162 PTLF-DCSIAENIIYGLDPS--SVTMAQVEEAARLA---NI------------------------HNF--IAELPEGFET 1209 (1321)
T ss_dssp CCCC-SEEHHHHHSSSSCTT--TSCHHHHHHHHHHT---TC------------------------HHH--HHTSTTTTCS
T ss_pred CEee-CccHHHHHhccCCCC--CCCHHHHHHHHHHh---CC------------------------hHH--HHcCcCCCCC
Confidence 7666 569999998874211 11222233332221 11 011 2368899999
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.||+++. +||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. .++|+|+ +.| +..+...||+
T Consensus 1210 ~vge~G~-~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~-IAH-RLsTi~~aD~ 1284 (1321)
T 4f4c_A 1210 RVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIV-IAH-RLNTVMNADC 1284 (1321)
T ss_dssp EETTTSC-SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEE-ECS-SSSTTTTCSE
T ss_pred EecCCCc-ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEE-ecc-CHHHHHhCCE
Confidence 9998765 599999999999999999999999999999999999999999998743 3445444 555 4567788999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|+||++|+|+++|+|+++++
T Consensus 1285 I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1285 IAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp EEEESSSSEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999986
No 87
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=8.3e-37 Score=331.88 Aligned_cols=200 Identities=22% Similarity=0.331 Sum_probs=160.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. +++.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---
Confidence 4789999988741 12458999999999999999999999999999999999876 5689999998
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccccc-------ccCCCCCCC
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS-------LVGLPGVSG 1007 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~~~~~~~~ 1007 (1156)
.+||++|++.+++. ||+||+.|+.. ... ..++++++.+++.+..+. .++.+ +..
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 38999999988875 99999987521 111 123345555555433222 22222 468
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
||||||||++|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++||+++. .+.||++++|++ |+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~--~~~~d~v~~l~~-G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH--LKKADKILILHE-GS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH--HHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHH--HHhCCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999997 45554 48999999999753 356999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
+++.|+.
T Consensus 207 i~~~g~~ 213 (229)
T 2pze_A 207 SYFYGTF 213 (229)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 8888874
No 88
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.9e-37 Score=328.43 Aligned_cols=188 Identities=19% Similarity=0.265 Sum_probs=155.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++||+|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 5999999999999999999999999999999999999998 999999998875 34577999999998999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+.|+....+. .. + ...++.+++.+||++. +.. +..||
T Consensus 98 nl~~~~~~~~~-~~----------------------------------~-~~~~~~~l~~~gl~~~-~~~-----~~~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV-KV----------------------------------N-KNEIMDALESVEVLDL-KKK-----LGELS 135 (214)
T ss_dssp HHHHHHHHTTC-CC----------------------------------C-HHHHHHHHHHTTCCCT-TSB-----GGGSC
T ss_pred HHHHHHHhcCC-ch----------------------------------H-HHHHHHHHHHcCCCcC-CCC-----hhhCC
Confidence 99987543211 00 0 1235667889999865 543 45699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.. .+.| |+.++|+..++..++|+|+++ .|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t-iiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EKGI-VIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HHSE-EEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-CCCE-EEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999999999999998764 3444 455677888888888887644 4444
No 89
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.3e-34 Score=357.19 Aligned_cols=214 Identities=23% Similarity=0.314 Sum_probs=178.3
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1156)
...++++|++++|+. +++.+|+|+|++|++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 339 ~~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 405 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGH 405 (582)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCE
Confidence 346999999999852 11458999999999999999999999999999999999876 56899999998
Q ss_pred cCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccc-------cCC
Q 001108 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-------VGL 1002 (1156)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~-------~~~ 1002 (1156)
++.. ..+++.+|||+|++.+++ .||+||+.++.. +..+ ++.++++++.+++.+..+.. +|.
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~ 476 (582)
T 3b5x_A 406 DVRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE----GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE 476 (582)
T ss_pred EhhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC----CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC
Confidence 7643 345678999999998887 499999998531 1112 34578889998887655443 343
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
. +.+||||||||++|||||+++|+||+|||||||||+.+++.+++.|+++.+ |+|||+++|+++ ..+.||++++|+
T Consensus 477 ~-~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~ 552 (582)
T 3b5x_A 477 N-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVD 552 (582)
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEE
Confidence 3 467999999999999999999999999999999999999999999999864 999999999986 346799999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 553 ~-G~i~~~g~~ 562 (582)
T 3b5x_A 553 E-GEIIERGRH 562 (582)
T ss_pred C-CEEEEECCH
Confidence 6 689998874
No 90
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.1e-36 Score=327.40 Aligned_cols=196 Identities=21% Similarity=0.312 Sum_probs=151.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
.++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 35899999999999999999999999999999999999998 99999998 39999999887774 999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.... . ....+.. +..+ .+..++. ++...++.++. ....|
T Consensus 87 enl~~~~~~~----~-~~~~~~~---~~~~------------------------l~~~~~~--~~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----E-YRYRSVI---KACQ------------------------LEEDISK--FAEKDNIVLGE-GGITL 131 (229)
T ss_dssp HHHHTTSCCC----H-HHHHHHH---HHTT------------------------CHHHHTT--STTGGGSCBCT-TCTTS
T ss_pred HHhhccCCcC----h-HHHHHHH---HHhC------------------------cHHHHHh--CcccccccccC-CCCcC
Confidence 9999863210 0 0000000 0000 0111222 23334555654 35679
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L-~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
||||||||+|||||+.+|+++||||||+|||+.++..+++.+ +++. .+. +|+.++|+...+ ..||+|++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~-tvi~vtH~~~~~-~~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANK-TRILVTSKMEHL-KKADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTS-EEEEECCCHHHH-HHCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCC-EEEEEcCChHHH-HhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999864 4432 234 455567777666 46999999999999
Q ss_pred EEEcChhHHH
Q 001108 404 VYQGPRELVL 413 (1156)
Q Consensus 404 v~~G~~~~~~ 413 (1156)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998874
No 91
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=330.34 Aligned_cols=199 Identities=23% Similarity=0.395 Sum_probs=157.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.|+. +++.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 788999988741 12458999999999999999999999999999999999876 6789999998
Q ss_pred hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC------ccc-ccccCCCCCCCC
Q 001108 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN------PLR-QSLVGLPGVSGL 1008 (1156)
Q Consensus 936 ~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~------~~~-~~~~~~~~~~~L 1008 (1156)
.+||++|++.+ +.+||+||+.|+... ..+ ..+++++.+++. +.. +...+.+ +..|
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL------EEP----YYRSVIQACALLPDLEILPSGDRTEIGEK-GVNL 128 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTT----HHHHHHHHTTCHHHHTTSTTGGGSEESTT-SBCC
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHH----HHHHHHHHHhhHHHHHhccccccccccCC-CCCC
Confidence 28999999864 578999999875321 111 123344444432 211 1112222 4579
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~---~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+ ++. +|+|||++||+++. + +.||++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999995 343 58999999999874 3 57999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
+++..|+.
T Consensus 205 ~i~~~g~~ 212 (237)
T 2cbz_A 205 KISEMGSY 212 (237)
T ss_dssp EEEEEECH
T ss_pred EEEEeCCH
Confidence 88888874
No 92
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=3.3e-34 Score=353.42 Aligned_cols=213 Identities=22% Similarity=0.305 Sum_probs=177.8
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++++|++++|+. +++.+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b60_A 340 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 406 (582)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred CcEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEE
Confidence 46999999998841 11358999999999999999999999999999999999876 568999999988
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccc-------cccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-------SLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-------~~~~~~ 1003 (1156)
+.. ..+++.+|||+|++.+++ .||+||+.++.. ...+ ++.++++++.+++.+..+ +.+|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~ 477 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART----EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN 477 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT----SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred ccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC----CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCC
Confidence 653 335567999999999887 499999998531 1122 245788888888876543 334443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+.+||||||||++|||||+++|+||+|||||||||+.+++.+++.|+++.+ |+|||+++|+++. .+.||++++|++
T Consensus 478 -~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~ 553 (582)
T 3b60_A 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVED 553 (582)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999864 9999999999873 467999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 554 -G~i~~~g~~ 562 (582)
T 3b60_A 554 -GIIVERGTH 562 (582)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEecCH
Confidence 689998874
No 93
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.1e-35 Score=364.75 Aligned_cols=212 Identities=25% Similarity=0.388 Sum_probs=174.2
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1156)
...++++|++++|+. ++.+|+|||+++++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 352 ~~~i~~~~v~~~y~~------------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 417 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDK------------KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGI 417 (598)
T ss_dssp CCCEEEEEEECCSSS------------SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEECCC------------CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCE
Confidence 347999999998851 2358999999999999999999999999999999999876 56899999998
Q ss_pred cCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccc-------cCC
Q 001108 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-------VGL 1002 (1156)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~-------~~~ 1002 (1156)
++.. ..+++.+|||+|++.+++ .||+||+.++. +..+. +.++++++.+++.+..+.. +|.
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~ 487 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGN-----PGATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTD 487 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSS-----TTCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHH
T ss_pred EhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCC-----CCCCH----HHHHHHHHHhCCHHHHHhccccccchhcC
Confidence 8653 345678999999998875 59999998752 11222 2356667766665544333 222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
. +.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|+++|+++. + +.||++++|+
T Consensus 488 ~-g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~ 563 (598)
T 3qf4_B 488 N-GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLR 563 (598)
T ss_dssp H-HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEEC
T ss_pred C-CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 1 24799999999999999999999999999999999999999999999985 59999999999974 4 5699999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 564 ~-G~i~~~g~~ 573 (598)
T 3qf4_B 564 D-GEIVEMGKH 573 (598)
T ss_dssp S-SSEEECSCH
T ss_pred C-CEEEEECCH
Confidence 6 689999874
No 94
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=330.46 Aligned_cols=195 Identities=25% Similarity=0.340 Sum_probs=151.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++. ++.+||+|
T Consensus 19 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~e 84 (237)
T 2cbz_A 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLRE 84 (237)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHHH
T ss_pred ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHHH
Confidence 4899999999999999999999999999999999999998 99999998 3999999875 56899999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCC-cccccccccccccCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL-DVCADTMVGDEMIRGI 324 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~vg~~~~~~L 324 (1156)
|+.|+.... . +...++. +. ..+++.+++ +...+|.++ +.+..|
T Consensus 85 nl~~~~~~~---~--~~~~~~~---~~---------------------------~~l~~~~~~~~~~~~~~~~-~~~~~L 128 (237)
T 2cbz_A 85 NILFGCQLE---E--PYYRSVI---QA---------------------------CALLPDLEILPSGDRTEIG-EKGVNL 128 (237)
T ss_dssp HHHTTSCCC---T--THHHHHH---HH---------------------------TTCHHHHTTSTTGGGSEES-TTSBCC
T ss_pred HhhCccccC---H--HHHHHHH---HH---------------------------HhhHHHHHhcccccccccc-CCCCCC
Confidence 999864211 0 0000000 00 001222332 223344554 345689
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHH---HHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLR---QNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~---~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|+ .+. .+ ++||.++|+...+ ..||+|++|++|
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~-~tviivtH~~~~~-~~~d~v~~l~~G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KN-KTRILVTHSMSYL-PQVDVIIVMSGG 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TT-SEEEEECSCSTTG-GGSSEEEEEETT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CC-CEEEEEecChHHH-HhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999884 321 23 4455567776665 579999999999
Q ss_pred eEEEEcChhHHHH
Q 001108 402 QIVYQGPRELVLE 414 (1156)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1156)
++++.|+++++..
T Consensus 205 ~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 205 KISEMGSYQELLA 217 (237)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEeCCHHHHhh
Confidence 9999999988754
No 95
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.8e-36 Score=368.65 Aligned_cols=214 Identities=21% Similarity=0.301 Sum_probs=176.0
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcC
Q 001108 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1156)
.+..++++|++++|+. +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 338 ~~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g 404 (587)
T 3qf4_A 338 VEGSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDE 404 (587)
T ss_dssp CCCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESS
T ss_pred CCCcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECC
Confidence 3457999999999852 23458999999999999999999999999999999999876 5689999999
Q ss_pred ccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-------cccccC
Q 001108 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVG 1001 (1156)
Q Consensus 932 ~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~ 1001 (1156)
.++.. ..+++.+|||+|++.+++. ||+||+.++. +..+. +.++++++..++.+. .++.++
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~-----~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~ 474 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGR-----EDATD----DEIVEAAKIAQIHDFIISLPEGYDSRVE 474 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTC-----SSCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEEC
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccC-----CCCCH----HHHHHHHHHhCcHHHHHhcccchhhHhc
Confidence 98754 3456779999999988864 9999998752 11222 234556666665443 234444
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1002 ~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
.. +.+||||||||++|||||+++|+||+||||||+||+.+++.|++.|+++. +|+|||+++|+++ ....||++++|
T Consensus 475 ~~-~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl 550 (587)
T 3qf4_A 475 RG-GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVL 550 (587)
T ss_dssp SS-SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEE
T ss_pred CC-CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEE
Confidence 43 45799999999999999999999999999999999999999999999974 5899999999986 35689999999
Q ss_pred ecCcEEEEecCC
Q 001108 1082 KRGGQEIYVGPL 1093 (1156)
Q Consensus 1082 ~~Gg~~~~~g~~ 1093 (1156)
++ |+++..|+.
T Consensus 551 ~~-G~i~~~g~~ 561 (587)
T 3qf4_A 551 HE-GKVAGFGTH 561 (587)
T ss_dssp ET-TEEEEEECH
T ss_pred EC-CEEEEECCH
Confidence 86 799999985
No 96
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.5e-35 Score=366.42 Aligned_cols=217 Identities=27% Similarity=0.362 Sum_probs=179.3
Q ss_pred ce-eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc
Q 001108 854 HS-LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1156)
Q Consensus 854 ~~-l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1156)
.. ++++|++++|+.. .++.+|+||||++++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 339 ~~~i~~~~v~~~y~~~----------~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~ 406 (595)
T 2yl4_A 339 QGALEFKNVHFAYPAR----------PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGH 406 (595)
T ss_dssp CCCEEEEEEEEECSSC----------TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCE
Confidence 45 9999999998521 12469999999999999999999999999999999999876 56899999998
Q ss_pred cCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCC
Q 001108 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGL 1002 (1156)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~ 1002 (1156)
++.. ..+++.+|||+|++.+++ .||+||+.|+.... ...+ ++.++++++.+++.+.. ++.+|.
T Consensus 407 ~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~ 479 (595)
T 2yl4_A 407 DIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGE 479 (595)
T ss_dssp ETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSS
T ss_pred EhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccC
Confidence 8653 335567999999998886 59999999853210 0111 34578889998876543 444554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
. +.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++.+ |+|||+++|+++ ..+.||++++|+
T Consensus 480 ~-~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~ 555 (595)
T 2yl4_A 480 K-GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS--TIKNANMVAVLD 555 (595)
T ss_dssp S-SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHcCCEEEEEE
Confidence 4 367999999999999999999999999999999999999999999999875 899999999986 346799999998
Q ss_pred cCcEEEEecCCC
Q 001108 1083 RGGQEIYVGPLG 1094 (1156)
Q Consensus 1083 ~Gg~~~~~g~~~ 1094 (1156)
+ |+++..|+..
T Consensus 556 ~-G~i~~~g~~~ 566 (595)
T 2yl4_A 556 Q-GKITEYGKHE 566 (595)
T ss_dssp T-TEEEEEECSC
T ss_pred C-CEEEEECCHH
Confidence 6 6899998753
No 97
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=5e-36 Score=369.16 Aligned_cols=213 Identities=24% Similarity=0.377 Sum_probs=176.4
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1156)
+..++++|++++|+. ++..+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 337 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCE
Confidence 457999999998852 12458999999999999999999999999999999999876 56899999998
Q ss_pred cCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCC
Q 001108 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGL 1002 (1156)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~ 1002 (1156)
++.. ...++.+|||+|++.+++. ||+||+.++. +... ++.+.++++.+++.+.. ++.+|.
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR-----PTAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC-----SSCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC-----CCCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhcc
Confidence 8653 3456679999999988875 9999998752 1122 23466777777765433 333443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
. +.+||||||||++|||||+++|+||+|||||||||+.++..+++.++++. +|+|+|+++|+++. .+.||++++|+
T Consensus 474 ~-g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~ 549 (578)
T 4a82_A 474 R-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIE 549 (578)
T ss_dssp G-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEE
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEE
Confidence 3 35799999999999999999999999999999999999999999999885 58999999999874 46799999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 550 ~-G~i~~~g~~ 559 (578)
T 4a82_A 550 N-GHIVETGTH 559 (578)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 6 799999984
No 98
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2e-34 Score=322.75 Aligned_cols=195 Identities=23% Similarity=0.351 Sum_probs=148.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.. +.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 40 ~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp ----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 57888887641 248999999999999999999999999999999999876 6789999988
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccccc-------ccCCCCCCC
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS-------LVGLPGVSG 1007 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~~~~~~~~ 1007 (1156)
.+||++|++.+++. ||+||+. +. . ... ..+.++++.+++.+..+. ..+.. +..
T Consensus 100 -------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 159 (290)
T ss_dssp -------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcCc-cCc
Confidence 38999999988874 9999997 31 1 111 123445566666443222 12221 357
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
||||||||++|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||+++ ..+.||++++|++ |+
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G~ 235 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GS 235 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-Ce
Confidence 9999999999999999999999999999999999999999974 4554 5899999999975 3457999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
+++.|+.
T Consensus 236 i~~~g~~ 242 (290)
T 2bbs_A 236 SYFYGTF 242 (290)
T ss_dssp EEEEECH
T ss_pred EEEeCCH
Confidence 8888874
No 99
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.4e-34 Score=384.17 Aligned_cols=260 Identities=19% Similarity=0.353 Sum_probs=195.7
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCC--CCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGI--DLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (1156)
.++.....+|+.++++..++ .... ...+. +....+++|+||++.+..
T Consensus 994 ~~~~~~a~~ri~~~l~~~~~-----~~~~-~~~~~~~~~~~g~i~~~~v~~~y~~------------------------- 1042 (1284)
T 3g5u_A 994 YAKATVSASHIIRIIEKTPE-----IDSY-STQGLKPNMLEGNVQFSGVVFNYPT------------------------- 1042 (1284)
T ss_dssp STHHHHHHHHHHHHHHSCCS-----SSSC-CSSCCCTTTTSCCEEEEEEEBCCSC-------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCc-----cccc-ccccccccCCCCcEEEEEEEEECCC-------------------------
Confidence 45667777888777665443 1000 00111 122457999999988732
Q ss_pred hhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEc
Q 001108 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (1156)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~ 232 (1156)
+...++|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+
T Consensus 1043 ------~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~ 1113 (1284)
T 3g5u_A 1043 ------RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVS 1113 (1284)
T ss_dssp ------GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEE
T ss_pred ------CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEEC
Confidence 11235899999999999999999999999999999999999998 9999999999876543 46799999
Q ss_pred CCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccc
Q 001108 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1156)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1156)
|++.++ +.||+|||.++..... ...+.+.+..+.. + .+.. .-.+++.+
T Consensus 1114 Q~~~l~-~~ti~eNi~~~~~~~~--~~~~~i~~~~~~~---~------------------------~~~~--i~~l~~gl 1161 (1284)
T 3g5u_A 1114 QEPILF-DCSIAENIAYGDNSRV--VSYEEIVRAAKEA---N------------------------IHQF--IDSLPDKY 1161 (1284)
T ss_dssp SSCCCC-SSBHHHHHTCCCSSCC--CCHHHHHHHHHHH---T------------------------CHHH--HSSTTTGG
T ss_pred CCCccc-cccHHHHHhccCCCCC--CCHHHHHHHHHHh---C------------------------cHHH--HHhCcccc
Confidence 988655 6799999988642211 1111122211111 0 0111 23578889
Q ss_pred cccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 001108 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1156)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~ 392 (1156)
||.||+.+. .|||||||||+|||||+.+|+||+|||||+|||+.+...|.+.|++.. .++| ++.++|+...+ ..|
T Consensus 1162 dt~vge~G~-~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~t-vi~isH~l~~i-~~~ 1236 (1284)
T 3g5u_A 1162 NTRVGDKGT-QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRT-CIVIAHRLSTI-QNA 1236 (1284)
T ss_dssp GCBCSTTSC-SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSC-EEEECSCTTGG-GSC
T ss_pred ccccCCCCC-ccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCE-EEEEecCHHHH-HcC
Confidence 999997654 699999999999999999999999999999999999999999998742 3444 55577887776 569
Q ss_pred CeEEEEcCCeEEEEcChhHHHH
Q 001108 393 DDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 393 D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
|+|++|++|+++++|+++++++
T Consensus 1237 dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1237 DLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp SEEEEEETBEEEEEECHHHHHH
T ss_pred CEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999875
No 100
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=8.9e-34 Score=317.58 Aligned_cols=195 Identities=21% Similarity=0.300 Sum_probs=147.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++.+++ .||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMP-GTIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCS-SBHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCc-ccHHH
Confidence 3899999999999999999999999999999999999998 99999998 3999999987777 59999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+. +... .. ....+. .+..+ .+..++. ++...++.++. ....||
T Consensus 118 nl~-~~~~----~~-~~~~~~---~~~~~------------------------l~~~l~~--~~~~~~~~~~~-~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSY----DE-YRYRSV---IKACQ------------------------LEEDISK--FAEKDNIVLGE-GGITLS 161 (290)
T ss_dssp HHH-TTCC----CH-HHHHHH---HHHTT------------------------CHHHHHT--STTGGGCBC-----CCCC
T ss_pred Hhh-Cccc----ch-HHHHHH---HHHhC------------------------hHHHHHh--ccccccchhcC-ccCcCC
Confidence 997 4211 00 000000 00000 0111222 23334555553 356799
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L-~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
|||||||+|||||+.+|++|||||||+|||+.++..+++.+ +++. .+ .+||.++|+...+ ..||+|++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~-~tviivtHd~~~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--AN-KTRILVTSKMEHL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TT-SEEEEECCCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CC-CEEEEEecCHHHH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999864 4432 23 4555577777665 569999999999999
Q ss_pred EEcChhHHHH
Q 001108 405 YQGPRELVLE 414 (1156)
Q Consensus 405 ~~G~~~~~~~ 414 (1156)
+.|+++++..
T Consensus 238 ~~g~~~~l~~ 247 (290)
T 2bbs_A 238 FYGTFSELQN 247 (290)
T ss_dssp EEECHHHHHH
T ss_pred EeCCHHHHhh
Confidence 9999988753
No 101
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=7.7e-31 Score=321.75 Aligned_cols=191 Identities=27% Similarity=0.303 Sum_probs=161.3
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1156)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 688999999999999999999999999999999999998 899976 2369999999877788999998
Q ss_pred HHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCCh
Q 001108 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (1156)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1156)
+.+..... .. ....++.+++.+||.+..+..++ .|||
T Consensus 438 ~~~~~~~~-----------~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 474 (607)
T 3bk7_A 438 LSKIDSSK-----------LN---------------------------SNFYKTELLKPLGIIDLYDRNVE-----DLSG 474 (607)
T ss_dssp HHHHHHHH-----------HH---------------------------CHHHHHHTHHHHTCTTTTTSBGG-----GCCH
T ss_pred HHhhhccC-----------CC---------------------------HHHHHHHHHHHcCCchHhcCChh-----hCCH
Confidence 86531000 00 01235667899999877776554 5999
Q ss_pred hHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC--CeEE
Q 001108 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (1156)
Q Consensus 327 GqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~--G~iv 404 (1156)
||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++..+ .+|+.++|+..++..+||+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 999999999999999999999999999999999999999999865334 4556688999999999999999986 8889
Q ss_pred EEcChhHHHH
Q 001108 405 YQGPRELVLE 414 (1156)
Q Consensus 405 ~~G~~~~~~~ 414 (1156)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 102
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=8.5e-31 Score=318.34 Aligned_cols=191 Identities=27% Similarity=0.301 Sum_probs=159.9
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1156)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+ ...++||+|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 688999999999999999999999999999999999998 899975 2369999998877788999988
Q ss_pred HHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCCh
Q 001108 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (1156)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1156)
+....... .. ....++.+++.+||.+..+..++ .|||
T Consensus 368 ~~~~~~~~-----------~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----------LN---------------------------SNFYKTELLKPLGIIDLYDREVN-----ELSG 404 (538)
T ss_dssp HHHHHHHH-----------HT---------------------------CHHHHHHTTTTTTCGGGTTSBGG-----GCCH
T ss_pred HHhhhccC-----------CC---------------------------HHHHHHHHHHHcCChhhhcCChh-----hCCH
Confidence 76431100 00 01234567888999876666554 6999
Q ss_pred hHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC--CeEE
Q 001108 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (1156)
Q Consensus 327 GqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~--G~iv 404 (1156)
||||||+||++|+.+|++|||||||+|||..++..|++.|++++...+ .+|+.++|+..++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 999999999999999999999999999999999999999998764334 4555688999999999999999986 7899
Q ss_pred EEcChhHHHH
Q 001108 405 YQGPRELVLE 414 (1156)
Q Consensus 405 ~~G~~~~~~~ 414 (1156)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 103
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=2.9e-30 Score=312.73 Aligned_cols=192 Identities=19% Similarity=0.197 Sum_probs=158.6
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1156)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|. .++|++|+....+.+||+||
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSCC---------CEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCe---------eeEeechhcccccCCCHHHH
Confidence 577788999999999999999999999999999999998 999997653 58999998766778999999
Q ss_pred HHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCCh
Q 001108 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (1156)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1156)
+.+.... .... ....++.+++.+||.+..+..++ .|||
T Consensus 351 l~~~~~~--~~~~-----------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 388 (538)
T 3ozx_A 351 LENASKD--ALST-----------------------------------SSWFFEEVTKRLNLHRLLESNVN-----DLSG 388 (538)
T ss_dssp HHHHCSS--TTCT-----------------------------------TSHHHHHTTTTTTGGGCTTSBGG-----GCCH
T ss_pred HHHhhhh--ccch-----------------------------------hHHHHHHHHHHcCCHHHhcCChh-----hCCH
Confidence 9874210 0000 01134567788899877776554 6999
Q ss_pred hHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC--CeEE
Q 001108 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (1156)
Q Consensus 327 GqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~--G~iv 404 (1156)
||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++++. .+++|+.++|+..++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~-~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE-RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 9999999999999999999999999999999999999999998764 355566689999999999999999986 6667
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
..|++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777765543
No 104
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-29 Score=309.52 Aligned_cols=192 Identities=24% Similarity=0.240 Sum_probs=158.7
Q ss_pred eEeeceeEEEeCC-----eEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCC
Q 001108 166 TILKDVSGVIKPG-----RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGE 240 (1156)
Q Consensus 166 ~iL~~vs~~i~~G-----~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1156)
.+++|+|+++.+| |+++|+|||||||||||++|+|+++|+ +|+. + .+..++|++|+......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCCC
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccCC
Confidence 4789999999999 779999999999999999999999998 7752 1 13469999998776777
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1156)
.||+|++.... .+... ....++.+++.+||.+.++..+
T Consensus 428 ~tv~e~~~~~~--~~~~~------------------------------------~~~~~~~~l~~l~l~~~~~~~~---- 465 (608)
T 3j16_B 428 GTVRQLFFKKI--RGQFL------------------------------------NPQFQTDVVKPLRIDDIIDQEV---- 465 (608)
T ss_dssp SBHHHHHHHHC--SSTTT------------------------------------SHHHHHHTHHHHTSTTTSSSBS----
T ss_pred ccHHHHHHHHh--hcccc------------------------------------cHHHHHHHHHHcCChhhhcCCh----
Confidence 89999875422 11000 0113456788999988777655
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++....+ .+|+.++|+..++..++|+|++|++
T Consensus 466 -~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g-~tviivtHdl~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 466 -QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK-KTAFIVEHDFIMATYLADKVIVFEG 543 (608)
T ss_dssp -SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEECEE
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999998765444 4555689999999999999999986
Q ss_pred --CeEEEEcChhHHHH
Q 001108 401 --GQIVYQGPRELVLE 414 (1156)
Q Consensus 401 --G~iv~~G~~~~~~~ 414 (1156)
|+++..|++++++.
T Consensus 544 ~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 544 IPSKNAHARAPESLLT 559 (608)
T ss_dssp ETTTEEECCCCEEHHH
T ss_pred CCCeEEecCChHHHhh
Confidence 99999999998875
No 105
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=2.6e-29 Score=317.29 Aligned_cols=193 Identities=21% Similarity=0.268 Sum_probs=157.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.+...|+++.|+ ++.+|+||||+|++|+++||+|||||||||||++|+| |.| +|.+.
T Consensus 435 ~L~~~~ls~~yg-------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAYG-------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEEC-------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 466678887773 3579999999999999999999999999999999994 111 34433
Q ss_pred ChhcccceEEEeccCC-CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHH
Q 001108 935 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGq 1012 (1156)
... ..++|++|+. .+++.+||.|++.+ ... .. +++++++++.+++. +..++.+ ..|||||
T Consensus 492 ~~~---~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGq 553 (986)
T 2iw3_A 492 QEE---CRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGW 553 (986)
T ss_dssp TTT---SCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHH
T ss_pred ccc---eeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHH
Confidence 211 2368999874 66788999999975 111 11 45688999999995 5666664 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-Eec
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 1091 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~-~~g 1091 (1156)
|||++||++|+.+|+||||||||+|||+.++..+++.|++ .|+|||++||++. .+.+.||++++|++ |+++ |.|
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G 628 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKG 628 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCC
Confidence 9999999999999999999999999999999999999997 5899999999986 47788999999986 5665 778
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
+.
T Consensus 629 ~~ 630 (986)
T 2iw3_A 629 NF 630 (986)
T ss_dssp CH
T ss_pred CH
Confidence 74
No 106
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=2e-29 Score=315.99 Aligned_cols=203 Identities=22% Similarity=0.295 Sum_probs=132.9
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHH---------------------hhhcCCCCC--CeE---EEEEEEcCccCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTG--GYI---TGNITISGYPKK 935 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl---------------------~~L~g~~~~--~~~---~G~i~i~g~~~~ 935 (1156)
.+|+||||+|++||++||+||||||||||+ +++.|...+ +.+ .+.|.++|.+..
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 479999999999999999999999999997 566654332 112 356777776543
Q ss_pred hhcccceEEEeccCCCC-------------------CCCCCHHHHHHHHHHhhCCCCCChHHHHH------HHHHHHHHc
Q 001108 936 QETFARISGYCEQNDIH-------------------SPFVTIYESLLFSAWLRLSPEVDSETRKM------FIDEVMELV 990 (1156)
Q Consensus 936 ~~~~~~~~gyv~q~~~~-------------------~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~------~v~~~l~~l 990 (1156)
.. .++.+||++|...+ ++.+||+||+.+...+..... .....+. ...++++.+
T Consensus 112 ~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 112 RN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHHT
T ss_pred cc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHHc
Confidence 21 22335555554332 356799999987533221110 0000000 112358888
Q ss_pred CCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 001108 991 ELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1067 (1156)
Q Consensus 991 ~l~~~-~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~--illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1067 (1156)
+|.+. .++.+ ..|||||||||+|||||+.+|+ ||||||||+|||+.++..++++|+++.++|.|||+|+||+
T Consensus 190 gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 190 GLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp TCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 88764 45553 4699999999999999999998 9999999999999999999999999988899999999997
Q ss_pred cHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 001108 1068 SIDIFEAFDELFLMK-----RGGQEIYVGPL 1093 (1156)
Q Consensus 1068 ~~~i~~~~d~v~~l~-----~Gg~~~~~g~~ 1093 (1156)
+ ....||++++|. ++|++++.|+.
T Consensus 265 ~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~ 293 (670)
T 3ux8_A 265 D--TMLAADYLIDIGPGAGIHGGEVVAAGTP 293 (670)
T ss_dssp H--HHHHCSEEEEECSSSGGGCCSEEEEECH
T ss_pred H--HHhhCCEEEEecccccccCCEEEEecCH
Confidence 5 456799999993 35799999985
No 107
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.96 E-value=1.8e-30 Score=316.40 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=114.2
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHH
Q 001108 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW 967 (1156)
Q Consensus 888 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~ 967 (1156)
++.+++|++++|+|+||||||||+++++|.... .|+ +.+.|++|++. ..+.++.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~----- 328 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNA----- 328 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHH-----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHH-----
Confidence 348999999999999999999999999985321 121 12455666531 1222221
Q ss_pred hhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----H
Q 001108 968 LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 1042 (1156)
Q Consensus 968 lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~-----~ 1042 (1156)
.+.. .+ +++ +...++..+.+.. +..||+||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 329 ~~~g--~~-------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 329 YSWG--MD-------FEE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp HTTS--CC-------HHH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred HHcC--CC-------HHH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 1111 11 112 2234555555443 3469999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCC----------cHHHHHhcCeEEEEecC
Q 001108 1043 AAIVMRTVRNTVDTGRTVVCTIHQP----------SIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1043 ~~~i~~~l~~~~~~g~tvi~~~H~~----------~~~i~~~~d~v~~l~~G 1084 (1156)
+..+.++++.+++.|.|||+++|+. . .+...+|++++|.+|
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~-~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS-HISTITDTIILLQYV 443 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS-CCTTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc-ccceeeeEEEEEEEE
Confidence 9999999999988899999999997 3 355689999999874
No 108
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=2e-24 Score=273.05 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=90.7
Q ss_pred HHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCC---ccceeecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 001108 298 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHINS 374 (1156)
Q Consensus 298 ~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p---~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~ 374 (1156)
.+..+|+.+||... .+| .....|||||||||.||++|+.+| ++|||||||+|||+.+...|++.|+++.. .+
T Consensus 784 ~~~~~L~~vGL~~~---~lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G 858 (916)
T 3pih_A 784 RTLQVLHDVGLGYV---KLG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RG 858 (916)
T ss_dssp HHHHHHHHTTGGGS---BTT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHcCCchh---hcc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cC
Confidence 35667889999642 223 344579999999999999999865 79999999999999999999999998864 34
Q ss_pred CeEEEEEecChhhHHhhcCeEEEE------cCCeEEEEcChhHHHH
Q 001108 375 GTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVLE 414 (1156)
Q Consensus 375 ~t~ii~i~q~~~~~~~~~D~iilL------~~G~iv~~G~~~~~~~ 414 (1156)
.| ||.++|+...+ ..||+|++| ++|+|+++|+++++.+
T Consensus 859 ~T-VIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 859 NT-VIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp CE-EEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CE-EEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 44 55578888665 569999999 8999999999999853
No 109
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.92 E-value=8e-25 Score=274.08 Aligned_cols=107 Identities=25% Similarity=0.275 Sum_probs=90.2
Q ss_pred HHHHHHHcCCcc-cccccccccccCCCChhHHHHHHHHHHHhcCC---ccceeecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 001108 299 TDYYLKVLGLDV-CADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHINS 374 (1156)
Q Consensus 299 ~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p---~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~ 374 (1156)
...+|+.+||.. ..+.. +..|||||||||+||++|+.+| ++|||||||+|||+.+...|++.|+++.. .+
T Consensus 825 ~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G 898 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NG 898 (972)
T ss_dssp HHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 356789999976 44444 4469999999999999999764 99999999999999999999999998864 34
Q ss_pred CeEEEEEecChhhHHhhcCeEEEE------cCCeEEEEcChhHHH
Q 001108 375 GTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (1156)
Q Consensus 375 ~t~ii~i~q~~~~~~~~~D~iilL------~~G~iv~~G~~~~~~ 413 (1156)
.+||.++|+..++ ..||+|++| .+|++++.|+++++.
T Consensus 899 -~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 899 -DTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp -CEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred -CEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 4555678888775 689999999 789999999999875
No 110
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.91 E-value=1.7e-24 Score=271.68 Aligned_cols=108 Identities=20% Similarity=0.259 Sum_probs=92.3
Q ss_pred HHHHHHHHcCCccc-ccccccccccCCCChhHHHHHHHHHHHhcC---CccceeecCCCCCCHHHHHHHHHHHHHHHHhc
Q 001108 298 ITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGP---ALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 373 (1156)
Q Consensus 298 ~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~al~~~---p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~ 373 (1156)
.+..+|+.+||... .+. .+..|||||||||.||++|+.+ |++|||||||+|||+.+...|++.|++++. .
T Consensus 709 ~~~~~L~~~gL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCcccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 45778999999763 333 3457999999999999999996 799999999999999999999999998864 3
Q ss_pred CCeEEEEEecChhhHHhhcCeEEEE------cCCeEEEEcChhHHH
Q 001108 374 SGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (1156)
Q Consensus 374 ~~t~ii~i~q~~~~~~~~~D~iilL------~~G~iv~~G~~~~~~ 413 (1156)
+.+||.++|+..++ ..||+|++| ++|++++.|+++++.
T Consensus 783 -G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 -GNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp -TCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred -CCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 45556688898888 889999999 799999999999874
No 111
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.91 E-value=2.1e-24 Score=271.30 Aligned_cols=108 Identities=25% Similarity=0.261 Sum_probs=90.6
Q ss_pred HHHHHHHcCCcc-cccccccccccCCCChhHHHHHHHHHHHhcC---CccceeecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 001108 299 TDYYLKVLGLDV-CADTMVGDEMIRGISGGQKKRVTTGEMMVGP---ALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 374 (1156)
Q Consensus 299 ~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqrqRvsia~al~~~---p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~ 374 (1156)
...+|+.+||.. ..+.. +..|||||||||+||++|+.+ |++|||||||+|||+.+...|++.|++++. .
T Consensus 843 ~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~- 915 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-K- 915 (993)
T ss_dssp HHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-
T ss_pred HHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-
Confidence 356789999975 34433 446999999999999999986 499999999999999999999999998864 3
Q ss_pred CeEEEEEecChhhHHhhcCeEEEE------cCCeEEEEcChhHHHH
Q 001108 375 GTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVLE 414 (1156)
Q Consensus 375 ~t~ii~i~q~~~~~~~~~D~iilL------~~G~iv~~G~~~~~~~ 414 (1156)
+.+||.++|+..++ ..||+|++| .+|++++.|+++++..
T Consensus 916 G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 916 GNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 44555678888775 789999999 7899999999998754
No 112
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=1.5e-24 Score=257.12 Aligned_cols=203 Identities=17% Similarity=0.148 Sum_probs=140.0
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC------------------------------------CeEEE
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG------------------------------------GYITG 925 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~------------------------------------~~~~G 925 (1156)
.+|++++++|.+| +++|+|||||||||||++|.+...+ ....|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3689999999999 9999999999999999999553211 01157
Q ss_pred EEEEcCccCChhc----ccceEEEeccCCCCCCCCCHHHHHHHHHHhhC-----------------------CCCCC---
Q 001108 926 NITISGYPKKQET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRL-----------------------SPEVD--- 975 (1156)
Q Consensus 926 ~i~i~g~~~~~~~----~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~-----------------------~~~~~--- 975 (1156)
.+.+||.+..... ....+++++|++.+... +..+...|.-+... .....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8999998876422 22348999998776532 44444333211100 00000
Q ss_pred -------------------------------hHHHHHHHHHHHHHcCCCccc----------------cc---ccCCC--
Q 001108 976 -------------------------------SETRKMFIDEVMELVELNPLR----------------QS---LVGLP-- 1003 (1156)
Q Consensus 976 -------------------------------~~~~~~~v~~~l~~l~l~~~~----------------~~---~~~~~-- 1003 (1156)
.+.....+.+.++.+++.... +. .....
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 001123345556666654310 00 01000
Q ss_pred ----CCCC-CCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 001108 1004 ----GVSG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1076 (1156)
Q Consensus 1004 ----~~~~-LSgGqrqrl~iA~aL~~~p--~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d 1076 (1156)
.+.. ||||||||++||++|+.+| ++|||||||+|||+.++..|.+.|+++. +|+|||+|||++. +.+.||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcC
Confidence 0112 6999999999999999999 9999999999999999999999999997 6999999999974 568899
Q ss_pred eEEEE----ecCcEEEEe
Q 001108 1077 ELFLM----KRGGQEIYV 1090 (1156)
Q Consensus 1077 ~v~~l----~~Gg~~~~~ 1090 (1156)
++++| .+ |+++..
T Consensus 364 ~i~~l~k~~~~-G~~~~~ 380 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVSH 380 (415)
T ss_dssp EEEEEEEEEET-TEEEEE
T ss_pred eEEEEEEeccC-CceEEE
Confidence 99999 65 455443
No 113
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.6e-27 Score=278.44 Aligned_cols=196 Identities=14% Similarity=0.062 Sum_probs=148.3
Q ss_pred eeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEE-E-EEEcCccCChhcccceEEEeccCCC---CCCCCCHH
Q 001108 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-N-ITISGYPKKQETFARISGYCEQNDI---HSPFVTIY 959 (1156)
Q Consensus 885 ~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gyv~q~~~---~~~~~Tv~ 959 (1156)
.++|+++++|++++|+||||||||||+++|+|... +..| + |.++|. .++.++|++|+.. +.+.+|++
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 37999999999999999999999999999999875 4578 8 999982 2456899999874 44567999
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH--HhcCCCE----EEEeC
Q 001108 960 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE--LVANPSI----IFMDE 1033 (1156)
Q Consensus 960 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~a--L~~~p~i----llLDE 1033 (1156)
||+ |+....... .. ++.+.++++.+++.+..+ ...|||||||||+|||+ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~~--~~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGA--TL---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSC--CS---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCc--ch---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 654321111 00 122455677778876654 24699999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc--H---HHHHhcCe-----EEEEecCcEEEEecCCCC----cch
Q 001108 1034 -PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS--I---DIFEAFDE-----LFLMKRGGQEIYVGPLGR----HSC 1098 (1156)
Q Consensus 1034 -PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~--~---~i~~~~d~-----v~~l~~Gg~~~~~g~~~~----~~~ 1098 (1156)
||++||+. ...+.++++++ |.|+|+++|+.+ . .+..++|+ +++|++.|+++ .|+... ...
T Consensus 268 pPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~ 342 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRT 342 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHH
T ss_pred CcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHH
Confidence 99999999 66666666543 789999999987 3 34578899 99998345666 776431 123
Q ss_pred hHHHHHHh
Q 001108 1099 HLISYFEA 1106 (1156)
Q Consensus 1099 ~~~~~f~~ 1106 (1156)
.+.+||..
T Consensus 343 ~i~~~f~g 350 (460)
T 2npi_A 343 SIREYFYG 350 (460)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhCC
Confidence 45567754
No 114
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.4e-26 Score=274.91 Aligned_cols=186 Identities=10% Similarity=0.043 Sum_probs=142.9
Q ss_pred eceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcee-E-EEEcCccCCCcCccceEEEEcCCCC---CCCCCCH
Q 001108 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG-T-VTYNGHDMDEFVPQRTAAYISQHDN---HIGEMTV 243 (1156)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~-V~~nG~~~~~~~~~~~~~yv~Q~d~---~~~~lTV 243 (1156)
.++|+.+++|++++|+||||||||||+++|+|.+.|+ +| + |.+||. +++.++|++|+.. +...+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 3799999999999999999999999999999999887 99 9 999982 3567999999873 4566899
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+ |+..... +.. .. ..+..+++.+||.+..+ ...
T Consensus 200 ~eni-~~~~~~~-~~~-----------~~------------------------~~~~~ll~~~gl~~~~~-------~~~ 235 (460)
T 2npi_A 200 QLPT-WGQSLTS-GAT-----------LL------------------------HNKQPMVKNFGLERINE-------NKD 235 (460)
T ss_dssp TCTT-CSCBCBS-SCC-----------SS------------------------CCBCCEECCCCSSSGGG-------CHH
T ss_pred hhhh-ccccccc-Ccc-----------hH------------------------HHHHHHHHHhCCCcccc-------hhh
Confidence 9998 7643210 000 00 00122355678876554 346
Q ss_pred CChhHHHHHHHHHH--HhcCCcc----ceeec-CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh-----hHHhh
Q 001108 324 ISGGQKKRVTTGEM--MVGPALA----LFMDE-ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP-----ETYDL 391 (1156)
Q Consensus 324 LSGGqrqRvsia~a--l~~~p~v----llLDE-ptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~-----~~~~~ 391 (1156)
|||||||||+||++ |+.+|++ ||||| ||++||+. ...|.+.+++ .+.++|+++|++.+ ++.++
T Consensus 236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~ 310 (460)
T 2npi_A 236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTF 310 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHh
Confidence 99999999999999 9999999 99999 99999999 4455555543 35566665555441 66689
Q ss_pred cCe-----EEEEc-CCeEEEEcChhHHH
Q 001108 392 FDD-----IILLS-DGQIVYQGPRELVL 413 (1156)
Q Consensus 392 ~D~-----iilL~-~G~iv~~G~~~~~~ 413 (1156)
+|+ |++|. +|+++ .|+++++.
T Consensus 311 ~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 311 GPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred cccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 999 99999 99999 99987663
No 115
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.89 E-value=2.9e-23 Score=245.93 Aligned_cols=236 Identities=15% Similarity=0.136 Sum_probs=147.5
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-----------------------------------CCce
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-----------------------------------LKVS 209 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-----------------------------------~~~~ 209 (1156)
..+|+++++.+.+| +++|+|||||||||||++|.+...+. ..-+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 34799999999999 99999999999999999997665420 0116
Q ss_pred eEEEEcCccCCCcCc----cceEEEEcCCCCCCCCCCHHHHHHHHhhhcCC-----CchhhHhHHHHHHHHhcCCCCCC-
Q 001108 210 GTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEMTVRETLAFSARCQGV-----GTRYEMLTELARREKAAGIKPDP- 279 (1156)
Q Consensus 210 G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~- 279 (1156)
|++.+||.+++.... ...+++++|++.++. .+..+...|--..... ...+....+..+..... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l-~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERL-QASESS 204 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Confidence 889999998764222 234899999875543 3666555542211100 00000011111100000 00000
Q ss_pred ----------ChHHHHHHHhh-----------hhhhhHHHHHHHHHHcCCcccc----------------cc---cccc-
Q 001108 280 ----------DIDVYMKAIAT-----------EGQEANVITDYYLKVLGLDVCA----------------DT---MVGD- 318 (1156)
Q Consensus 280 ----------d~~~~~~~~~~-----------~~~~~~~~~~~~l~~lgL~~~~----------------dt---~vg~- 318 (1156)
.++.+.+.... ........+...++.++++... +. .+..
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 01111111000 1112233456667777765411 00 1111
Q ss_pred -----cccCC-CChhHHHHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 001108 319 -----EMIRG-ISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (1156)
Q Consensus 319 -----~~~~~-LSGGqrqRvsia~al~~~p--~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1156)
..++. |||||||||+||++|+.+| ++|||||||+|||+.+...|.+.|+++. .+.++ |.++|.. ++.+
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~v-i~itH~~-~~~~ 360 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQV-LVVTHLA-QIAA 360 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEE-EEECSCH-HHHT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEE-EEEeCcH-HHHh
Confidence 11222 6999999999999999999 9999999999999999999999999875 24454 4467775 6678
Q ss_pred hcCeEEEE----cCCeEEEEc
Q 001108 391 LFDDIILL----SDGQIVYQG 407 (1156)
Q Consensus 391 ~~D~iilL----~~G~iv~~G 407 (1156)
.||++++| .+|+++...
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEEE
T ss_pred hcCeEEEEEEeccCCceEEEE
Confidence 99999999 999987653
No 116
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.88 E-value=5.7e-26 Score=242.42 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=98.0
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHH
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 959 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~ 959 (1156)
++.+|+|| ++|++++|+||||||||||+++|+|. . +.+|+|............++.+||++|++ +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------H
Confidence 34578886 89999999999999999999999998 5 33454421101111112356799999975 4
Q ss_pred HHH-HHHH----HhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001108 960 ESL-LFSA----WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034 (1156)
Q Consensus 960 e~l-~~~~----~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEP 1034 (1156)
||+ .+.. .+... .. .+.++++++. + | |||||++|||||+.+|+|||||||
T Consensus 77 enl~~~~~~~~~~~~~~--~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEP 131 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDM--VE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEA 131 (208)
T ss_dssp ---CTTTHHHHHHHTTT--SC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSG
T ss_pred HHHHHHHHHHHHHHHHh--cc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCC
Confidence 554 2311 11110 01 1234455543 2 2 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001108 1035 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068 (1156)
Q Consensus 1035 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1068 (1156)
|+| ++..+++.|+++ ++|+||| +||+++
T Consensus 132 ts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 132 QNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred ccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 999 888999999988 6799999 999975
No 117
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.87 E-value=3.2e-22 Score=232.19 Aligned_cols=81 Identities=22% Similarity=0.367 Sum_probs=74.1
Q ss_pred CCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 001108 1005 VSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|+|||+++|+++ ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 3579999999999999999 799999999999999999999999999999888999999999975 46789999
Q ss_pred EEEecCcEEE
Q 001108 1079 FLMKRGGQEI 1088 (1156)
Q Consensus 1079 ~~l~~Gg~~~ 1088 (1156)
++|++ |+++
T Consensus 355 ~~l~~-G~i~ 363 (365)
T 3qf7_A 355 LRITG-GVVV 363 (365)
T ss_dssp EEEET-TEEC
T ss_pred EEEEC-CEEE
Confidence 99986 5664
No 118
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.87 E-value=2.2e-23 Score=216.07 Aligned_cols=150 Identities=13% Similarity=0.178 Sum_probs=104.2
Q ss_pred eeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCC-CCCHHHHHHH
Q 001108 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP-FVTIYESLLF 964 (1156)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~-~~Tv~e~l~~ 964 (1156)
||||++++||+++|+||||||||||++++.+-.. . +++ .. ..|+++|++.... .-++++.+..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--~------~~~-----d~---~~g~~~~~~~~~~~~~~~~~~~~~ 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--V------ISS-----DF---CRGLMSDDENDQTVTGAAFDVLHY 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--E------EEH-----HH---HHHHHCSSTTCGGGHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--E------Ecc-----HH---HHHHhcCcccchhhHHHHHHHHHH
Confidence 6899999999999999999999999999764211 1 111 11 1266777643210 0011121111
Q ss_pred HHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH---
Q 001108 965 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 1041 (1156)
Q Consensus 965 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~--- 1041 (1156)
.. +.....+.....+.. ...|+|||||++||++|+.+|++|+|||||++||+.
T Consensus 65 -----------------~~-~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 65 -----------------IV-SKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp -----------------HH-HHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred -----------------HH-HHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 11 122233444444432 246999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 001108 1042 -------------AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077 (1156)
Q Consensus 1042 -------------~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~ 1077 (1156)
....+++.|+++.++|.|||+++|+++ ..+.+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~--~~~~~~~ 167 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE--EVEEVVF 167 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH--HHHHEEE
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH--Hhhhhhh
Confidence 668899999888777999999999974 3444444
No 119
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.86 E-value=1.1e-21 Score=224.14 Aligned_cols=85 Identities=22% Similarity=0.227 Sum_probs=74.8
Q ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE--E
Q 001108 1006 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL--F 1079 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~----~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v--~ 1079 (1156)
..||+|||||++||++|+ .+|++|+|||||++||+.....+++.|+++. +|.|||+|||++. +.+.+|++ +
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v 294 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGV 294 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEE
Confidence 579999999999999997 6889999999999999999999999999984 5899999999964 57889986 7
Q ss_pred EEecCcEEEEecCC
Q 001108 1080 LMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1080 ~l~~Gg~~~~~g~~ 1093 (1156)
+|.+|...+.....
T Consensus 295 ~~~~g~s~~~~~~~ 308 (322)
T 1e69_A 295 TMVNGVSAIVPVEV 308 (322)
T ss_dssp EESSSCEEEEECCC
T ss_pred EEeCCEEEEEEEEc
Confidence 88887777766654
No 120
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.84 E-value=6e-21 Score=221.43 Aligned_cols=84 Identities=23% Similarity=0.351 Sum_probs=72.1
Q ss_pred cccCCCChhHHHHHHHHHHHh------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 001108 319 EMIRGISGGQKKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~------~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~ 392 (1156)
+.+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.. .+.| |+.++|+... .+.+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~t-vi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKV-IVFITHDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSE-EEEEESCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCE-EEEEecchHH-HHhC
Confidence 456679999999999999999 79999999999999999999999999998753 3444 5557777765 7889
Q ss_pred CeEEEEcCCeEEE
Q 001108 393 DDIILLSDGQIVY 405 (1156)
Q Consensus 393 D~iilL~~G~iv~ 405 (1156)
|+|++|.+|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999974
No 121
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.83 E-value=2.5e-23 Score=221.91 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=95.9
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1156)
..+.+|+|+ ++|++++|+|||||||||||++|+|. +|+ +|+|............++.++||+|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH-------
Confidence 345689996 89999999999999999999999999 886 777732101111112346799999965
Q ss_pred HHHHH-HHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 243 VRETL-AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 243 V~E~l-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
+||+ .|..... ... . ... + ...++.+++. |
T Consensus 76 -~enl~~~~~~~~---------~~~---~---~~~-~-----------------~~~~~~~l~~-g-------------- 106 (208)
T 3b85_A 76 -NEKIDPYLRPLH---------DAL---R---DMV-E-----------------PEVIPKLMEA-G-------------- 106 (208)
T ss_dssp -----CTTTHHHH---------HHH---T---TTS-C-----------------TTHHHHHHHT-T--------------
T ss_pred -HHHHHHHHHHHH---------HHH---H---Hhc-c-----------------HHHHHHHHHh-C--------------
Confidence 6666 3321000 000 0 000 0 0122333332 2
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~ 388 (1156)
| ||||||+|||||+.+|++|||||||+| ++..+++.|+++ . . +++|+ ++|+..++
T Consensus 107 --l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~-g~tii-vtHd~~~~ 161 (208)
T 3b85_A 107 --I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-F-GSKMV-VTGDITQV 161 (208)
T ss_dssp --S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-T-TCEEE-EEEC----
T ss_pred --C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-C-CCEEE-EECCHHHH
Confidence 2 999999999999999999999999999 888899999875 2 3 45566 77776544
No 122
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.83 E-value=1.5e-23 Score=244.65 Aligned_cols=170 Identities=15% Similarity=0.163 Sum_probs=135.5
Q ss_pred EEeeeeeEEEeCCe--------------------EEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccc
Q 001108 882 VLLNGVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR 941 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge--------------------~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~ 941 (1156)
.+|++||+++++|+ ++||+||||||||||+|+|+|... +.+|.|.++|.+.. +
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t-----~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT-----M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC---------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc-----e
Confidence 47999999999999 999999999999999999999865 35788888886542 1
Q ss_pred eEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH--HHHHHHHH
Q 001108 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTIA 1019 (1156)
Q Consensus 942 ~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG--qrqrl~iA 1019 (1156)
.+|++|++ .++.+|+.|++.++. . +..++++++.+++.+..... .||+| ||||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHHH
Confidence 27899985 567889888775531 0 12367889999987653322 28999 99999999
Q ss_pred HHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hC----CCEEEEEecCCcH-HHHHhcCeEE
Q 001108 1020 VELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DT----GRTVVCTIHQPSI-DIFEAFDELF 1079 (1156)
Q Consensus 1020 ~aL~~----------~p~illLDEPTsgLD~~~~~~i~~~l~~~~-----~~----g~tvi~~~H~~~~-~i~~~~d~v~ 1079 (1156)
++|+. +|++++|||||+|||+.++..+++.|+++. +. ..+|++++|+.+- ++.+++|++.
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999 999999999999999999999999999884 32 3678899998762 3677788875
No 123
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.82 E-value=1.5e-20 Score=214.75 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=69.2
Q ss_pred cCCCChhHHHHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE-
Q 001108 321 IRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI- 395 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~----~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i- 395 (1156)
+..|||||||||+||++|+ .+|++++|||||++||+.....+.+.|+++. .+.+ |+.++|. .++.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~-vi~~tH~-~~~~~~~d~~~ 292 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQ-FIVITHN-KIVMEAADLLH 292 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSE-EEEECCC-TTGGGGCSEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCe-EEEEECC-HHHHhhCceEE
Confidence 4579999999999999997 6899999999999999999999999999863 3444 4546666 5788999987
Q ss_pred -EEEcCCeE-EEEcChhHH
Q 001108 396 -ILLSDGQI-VYQGPRELV 412 (1156)
Q Consensus 396 -ilL~~G~i-v~~G~~~~~ 412 (1156)
++|.+|.. +.....++.
T Consensus 293 ~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp EEEESSSCEEEEECCC---
T ss_pred EEEEeCCEEEEEEEEcchh
Confidence 88888855 444555443
No 124
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.81 E-value=1.5e-22 Score=236.16 Aligned_cols=172 Identities=15% Similarity=0.144 Sum_probs=131.8
Q ss_pred ceEeeceeEEEeCCe--------------------EEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc
Q 001108 165 LTILKDVSGVIKPGR--------------------LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~--------------------~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~ 224 (1156)
..+|+|||+.+++|+ +++|+||||||||||+|+|+|+++|+ +|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 468999999999999 99999999999999999999999998 999999997643
Q ss_pred cceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHH
Q 001108 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (1156)
Q Consensus 225 ~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1156)
+ .+|++|++ .++.+|+.||+.++.. + ..++.+++
T Consensus 109 -~-~~~v~q~~-~~~~ltv~D~~g~~~~------~-------------------------------------~~~~~~L~ 142 (413)
T 1tq4_A 109 -M-ERHPYKHP-NIPNVVFWDLPGIGST------N-------------------------------------FPPDTYLE 142 (413)
T ss_dssp -C-CCEEEECS-SCTTEEEEECCCGGGS------S-------------------------------------CCHHHHHH
T ss_pred -e-eEEecccc-ccCCeeehHhhcccch------H-------------------------------------HHHHHHHH
Confidence 1 27899974 5778899988754310 0 01355677
Q ss_pred HcCCcccccccccccccCCCChh--HHHHHHHHHHHhc----------CCccceeecCCCCCCHHHHHHHHHHHHHHHH-
Q 001108 305 VLGLDVCADTMVGDEMIRGISGG--QKKRVTTGEMMVG----------PALALFMDEISTGLDSSTTFQIVNCLRQNIH- 371 (1156)
Q Consensus 305 ~lgL~~~~dt~vg~~~~~~LSGG--qrqRvsia~al~~----------~p~vllLDEptsgLD~~~~~~i~~~L~~~~~- 371 (1156)
.++|.+.. .. .. |||| ||||+.||++|.. +|++++|||||+|||+.++.++++.|+++..
T Consensus 143 ~~~L~~~~-~~-----~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYD-FF-----II-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCS-EE-----EE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccC-Ce-----EE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 88887542 21 22 9999 9999999999999 9999999999999999999999999988752
Q ss_pred ---hc---CCeEEEEEecChhh--HHhhcCeEE
Q 001108 372 ---IN---SGTAVISLLQPAPE--TYDLFDDII 396 (1156)
Q Consensus 372 ---~~---~~t~ii~i~q~~~~--~~~~~D~ii 396 (1156)
.. ..++|+..+|...+ +.+++|+|.
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 22 23555444554544 666666663
No 125
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.81 E-value=3.2e-21 Score=200.82 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=99.7
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 972 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~ 972 (1156)
.++|+||||||||||+++|+|... |.++|++... ...++.+||++|+. ++.+++ + +.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-HhhcC--
Confidence 689999999999999999999653 2223322111 02345689999975 222222 1 11100
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHH
Q 001108 973 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAI 1045 (1156)
Q Consensus 973 ~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~a-----L~~~p~illLDE--PTsgLD~~~~~~ 1045 (1156)
. -.+..+.. +..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 65 --~----------------~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 --T----------------SKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp --C----------------CSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred --C----------------cccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 0 00122222 24699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEec---CCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1046 VMRTVRNTVDTGRTVVCTIH---QPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1046 i~~~l~~~~~~g~tvi~~~H---~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
+.+.+++ .+.|+|+++| +.. .+...+|+ .+|+++...+
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~ 162 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTP 162 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCT
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecC
Confidence 9988875 4777888886 544 35667776 4566666544
No 126
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.81 E-value=6.1e-24 Score=227.33 Aligned_cols=183 Identities=12% Similarity=0.049 Sum_probs=118.0
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHH
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 960 (1156)
..+++| .+|++|++++|+||||||||||+++|+|... .+.+.+.+.+.+... ..++.++|++|++..++.+|+.+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhcC
Confidence 457888 6899999999999999999999999999753 233333333332221 12356899999887777777777
Q ss_pred HHHHHHHhhCC---CCCChHHHHHHHHHH------HHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001108 961 SLLFSAWLRLS---PEVDSETRKMFIDEV------MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031 (1156)
Q Consensus 961 ~l~~~~~lr~~---~~~~~~~~~~~v~~~------l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illL 1031 (1156)
++.+......+ ...+.++.++.+++. ++.+++...++... ..|| +|+.+|++++|
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~L 147 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQDL 147 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHHH
Confidence 65322111100 011233344445554 44445544444442 3466 88999999999
Q ss_pred eCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1032 DEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1032 DEPTsgL----D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
||||+|+ |+..+..+++.++++.+ .|.|||+++|+++ ++...||++++|.+.|
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 9999998 78899999999999874 5899999999987 5888999999986544
No 127
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.81 E-value=2.7e-23 Score=232.95 Aligned_cols=157 Identities=17% Similarity=0.204 Sum_probs=116.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.+|+|+|+.|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.++. .|++|
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~~ 171 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLAD 171 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGTT
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHHH
Confidence 4899999999999999999999999999999999997 4887 356778665554 58886
Q ss_pred -HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 246 -TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 246 -~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||.|.... . + .+...++.+ |++..| | ..|
T Consensus 172 ~ni~~~~~~-----~-~------------------------------------~~~~~i~~~-L~~gld---g----~~L 201 (305)
T 2v9p_A 172 TRAALVDDA-----T-H------------------------------------ACWRYFDTY-LRNALD---G----YPV 201 (305)
T ss_dssp CSCEEEEEE-----C-H------------------------------------HHHHHHHHT-TTGGGG---T----CCE
T ss_pred HhhccCccc-----c-H------------------------------------HHHHHHHHH-hHccCC---c----cCc
Confidence 77653110 0 0 011223333 454444 2 369
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||| |||++.+|+||| ||+||+.+...|.. + + |..++...+|+| +|++|+++
T Consensus 202 SgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------t-H~~~~~~~aD~i-vl~~G~iv 256 (305)
T 2v9p_A 202 SIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------H-SRVQTFRFEQPC-TDESGEQP 256 (305)
T ss_dssp ECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------T-TTEEEEECCCCC-CCC---CC
T ss_pred CHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------h-CCHHHHHhCCEE-EEeCCEEE
Confidence 9999999 999999999999 99999999887752 1 2 234456789999 99999999
Q ss_pred EEcChhHHHHHHHhc
Q 001108 405 YQGPRELVLEFFASM 419 (1156)
Q Consensus 405 ~~G~~~~~~~~f~~~ 419 (1156)
+.|+++++..+|.++
T Consensus 257 ~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 257 FNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCHHHHHHHHHHS
T ss_pred EeCCHHHHHHHHHHH
Confidence 999999996666553
No 128
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.79 E-value=1.1e-20 Score=195.70 Aligned_cols=66 Identities=11% Similarity=0.017 Sum_probs=54.4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHH----------------HHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS----------------TTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~----------------~~~~i~~~L~~~~~~~~~t~ii~i~q~~~ 386 (1156)
..||||||||+||++++.+|++++|||||++||+. ....+.+.|+++.. .+.|+| .++|+..
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~-~g~tvi-~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQR-EGFRYV-YILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHH-HTCSEE-EEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHh-cCCcEE-EEeCCHH
Confidence 36999999999999999999999999999999999 55888888887755 355544 4677777
Q ss_pred hHHh
Q 001108 387 ETYD 390 (1156)
Q Consensus 387 ~~~~ 390 (1156)
++.+
T Consensus 161 ~~~~ 164 (171)
T 4gp7_A 161 EVEE 164 (171)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 6643
No 129
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.79 E-value=6.6e-21 Score=198.44 Aligned_cols=149 Identities=13% Similarity=0.137 Sum_probs=101.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 259 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 259 (1156)
.++|+||||||||||+++|+|.+. ..+.|... .+......++.++|++|+. |+.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 589999999999999999999985 22334321 1111102246789999964 222222 00 00
Q ss_pred hhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHH--
Q 001108 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM-- 337 (1156)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~a-- 337 (1156)
+... +..++ +.+..||||||||++||++
T Consensus 63 -----------------------------------------------~~~~--~~~~~-~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 -----------------------------------------------FFTS--KKLVG-SYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp -----------------------------------------------TCCC--SSEET-TEEECHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cCCc--ccccc-ccccCcCHHHHHHHHHHhhcc
Confidence 0000 01122 2344699999999999996
Q ss_pred ---HhcCCccceeec--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe--cChhhHHhhcCeEEEEcCCeEEE
Q 001108 338 ---MVGPALALFMDE--ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL--QPAPETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 338 ---l~~~p~vllLDE--ptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~--q~~~~~~~~~D~iilL~~G~iv~ 405 (1156)
++.+|++++||| ||++||+.....+.+.+++ .+.++|+++| |+.+.+..++|+ .+|+++.
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999998888864 3455777775 788888889998 5566654
No 130
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.77 E-value=1.1e-20 Score=212.92 Aligned_cols=154 Identities=16% Similarity=0.122 Sum_probs=118.8
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh-------cc--cceEEEeccCCC-CC
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HS 953 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~-~~ 953 (1156)
++.+|+++++|++++|+||||||||||+++|+|... +..|+|.++|.+.... .+ ++.++|++|++. +.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 457889999999999999999999999999999754 3468999999876431 12 235899999988 88
Q ss_pred CCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEE
Q 001108 954 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFM 1031 (1156)
Q Consensus 954 ~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~--illL 1031 (1156)
+.+|++|++.+... +. .+ ..+++.+++.+..+..+ .+|| |||++||++|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~~---~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-EG---YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-TT---CS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-cC---Cc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 88999999987532 11 10 13456677766665553 3589 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 001108 1032 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1066 (1156)
Q Consensus 1032 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1066 (1156)
| ||+|||+.... +++. ..|.|+|++||.
T Consensus 228 D-ptsglD~~~~~------~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 228 D-GNTGLNMLPQA------REFNEVVGITGLILTKL 256 (302)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEECC
T ss_pred e-CCCCcCHHHHH------HHHHHhcCCCEEEEeCC
Confidence 9 99999988652 3443 358999999994
No 131
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.76 E-value=9.6e-21 Score=210.33 Aligned_cols=148 Identities=13% Similarity=0.112 Sum_probs=97.0
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 975 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~ 975 (1156)
.+||+||||||||||+|+|+|... +..|+|.++|.+......++.+||++|++.+++.+||.|++.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 489999999999999999999765 4689999999877555556789999999999999999999988754321 111
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001108 976 SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055 (1156)
Q Consensus 976 ~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1055 (1156)
. +.+.+.++ ....+... ..||||||||++|||+++. ++||||||.|||+.. .+.++.+.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 12233332 22333332 3699999999999999875 999999999999987 344555555
Q ss_pred CCCEEEEEecCCc
Q 001108 1056 TGRTVVCTIHQPS 1068 (1156)
Q Consensus 1056 ~g~tvi~~~H~~~ 1068 (1156)
. .+||+++|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999999754
No 132
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.75 E-value=6.8e-20 Score=206.56 Aligned_cols=174 Identities=16% Similarity=0.140 Sum_probs=127.1
Q ss_pred eeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-------c--cceEEEEcCCCC-C
Q 001108 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------P--QRTAAYISQHDN-H 237 (1156)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-------~--~~~~~yv~Q~d~-~ 237 (1156)
++++|+.+++|++++|+||||||||||++.|+|.+.|+ +|+|.++|.++.... . ++.++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 45789999999999999999999999999999999887 899999998865431 1 236899999988 8
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++.+||+|++.++... +. + ..+++.+|+.+..+..+
T Consensus 167 ~~~~~v~e~l~~~~~~-~~-----------------------d-------------------~~lldt~gl~~~~~~~~- 202 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-GY-----------------------D-------------------VVLCDTSGRLHTNYSLM- 202 (302)
T ss_dssp CHHHHHHHHHHHHHHT-TC-----------------------S-------------------EEEECCCCCSSCCHHHH-
T ss_pred CHHHHHHHHHHHHHHc-CC-----------------------c-------------------chHHhcCCCCcchhHHH-
Confidence 8899999999876421 00 0 00233456665555444
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCc--cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC---------hh
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP---------AP 386 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~--vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~---------~~ 386 (1156)
..|| |||++||++++.+|+ +|+|| ||+|||+.... +++.+..+.++|+ ++|- ..
T Consensus 203 ----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 203 ----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVS 267 (302)
T ss_dssp ----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EECCSSCSCTHHHHH
T ss_pred ----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEE-EeCCCCCCccChhee
Confidence 3589 999999999999999 99999 99999987542 3333223455555 4552 23
Q ss_pred hHHhhcCeEEEEcCCeE
Q 001108 387 ETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 387 ~~~~~~D~iilL~~G~i 403 (1156)
.+....+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 34456678888888864
No 133
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.75 E-value=4.7e-20 Score=204.74 Aligned_cols=145 Identities=12% Similarity=0.175 Sum_probs=88.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 259 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 259 (1156)
.++|+||||||||||+|+|+|...|+ +|+|.++|.++.....++.++|++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH-
Confidence 47999999999999999999999998 99999999987655556789999999999999999999998754321100
Q ss_pred hhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHh
Q 001108 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339 (1156)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~ 339 (1156)
.+.+. ..+. ....+.. ...|||||||||++||+++
T Consensus 80 ~~~i~------------------------------------~~~~----~~~~~~~-----~~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 WEPIE------------------------------------KYIN----EQYEKFL-----KEEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp SHHHH------------------------------------HHHH----HHHHHHH-----HHHSCTTCCSSCCCCSCCE
T ss_pred HHHHH------------------------------------HHHH----HHHHhhh-----HHhcCcccchhhhhheeee
Confidence 00000 0000 1111222 2359999999999999987
Q ss_pred cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe
Q 001108 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 382 (1156)
Q Consensus 340 ~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~ 382 (1156)
. ++|||||+.|||+.. .+ .++.+.. . .++|++++
T Consensus 115 ~---lllldep~~gL~~lD-~~---~l~~L~~-~-~~vI~Vi~ 148 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD-LE---FMKHLSK-V-VNIIPVIA 148 (270)
T ss_dssp E---EEEECCCSSSCCHHH-HH---HHHHHHT-T-SEEEEEET
T ss_pred e---eEEEecCCCcCCHHH-HH---HHHHHHh-c-CcEEEEEe
Confidence 5 999999999999987 33 3444332 2 55555443
No 134
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.75 E-value=3.7e-18 Score=196.21 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=74.6
Q ss_pred ccccC-CCChhHHHHHHHHHHHh---------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 001108 318 DEMIR-GISGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1156)
Q Consensus 318 ~~~~~-~LSGGqrqRvsia~al~---------~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~ 387 (1156)
+..++ .+|||||||++||++|+ ++|+||||||||++||+..+..+++.|+++ . .++|+++|. ..
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~-qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----P-QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----S-EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----C-cEEEEEEec-cc
Confidence 44566 79999999999999999 899999999999999999999999999763 2 566667774 33
Q ss_pred HHhhcCeEEEEcCCeEEEEcChhHH
Q 001108 388 TYDLFDDIILLSDGQIVYQGPRELV 412 (1156)
Q Consensus 388 ~~~~~D~iilL~~G~iv~~G~~~~~ 412 (1156)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998765
No 135
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.75 E-value=1e-22 Score=228.24 Aligned_cols=170 Identities=12% Similarity=0.129 Sum_probs=122.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++||++.|+ ..+|++||++|++|+++||+||||||||||+++|+|.. .|.|
T Consensus 101 ~i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I------- 154 (305)
T 2v9p_A 101 FFNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV------- 154 (305)
T ss_dssp HHHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE-------
T ss_pred eEEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE-------
Confidence 367788887763 13799999999999999999999999999999999965 3555
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHH-HHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYE-SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e-~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
++|++|++.++. .|++| |+.|.. +.+. .+++.++.+ |.+..+ +..||||||
T Consensus 155 --------~~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqk 206 (305)
T 2v9p_A 155 --------LSFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRK 206 (305)
T ss_dssp --------ECGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCS
T ss_pred --------EEEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHH
Confidence 345677766554 36665 665521 1111 244555553 333223 246999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|| ||||+++|+||| ||+||+.++..|+. .+|+++ .++.+|++ +|++ |++++.|+.
T Consensus 207 QR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~-G~iv~~g~~ 261 (305)
T 2v9p_A 207 HK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDES-GEQPFNITD 261 (305)
T ss_dssp SC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH
T ss_pred HH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeC-CEEEEeCCH
Confidence 99 999999999999 99999999988762 189876 45789999 8875 788888874
Q ss_pred CCcchhHHHHHHhC
Q 001108 1094 GRHSCHLISYFEAI 1107 (1156)
Q Consensus 1094 ~~~~~~~~~~f~~~ 1107 (1156)
.++..+|..+
T Consensus 262 ----~el~~~y~~l 271 (305)
T 2v9p_A 262 ----ADWKSFFVRL 271 (305)
T ss_dssp ----HHHHHHHHHS
T ss_pred ----HHHHHHHHHH
Confidence 3444555554
No 136
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.74 E-value=5.7e-20 Score=210.84 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=119.6
Q ss_pred eeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh-------cc--cceEEEeccCCC-CCC
Q 001108 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HSP 954 (1156)
Q Consensus 885 ~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~-~~~ 954 (1156)
..+|+++++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. +.|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46788899999999999999999999999999754 2368999999876431 12 245899999988 888
Q ss_pred CCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEe
Q 001108 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMD 1032 (1156)
Q Consensus 955 ~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~--illLD 1032 (1156)
..|++|++.+... + . .+ ..+++.+++.+..+..+ .+|| |||++||++|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~-~-~--~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKE-E-G--YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHH-T-T--CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHh-C-C--CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 8999999987642 1 1 11 12456677776665553 3588 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 001108 1033 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1066 (1156)
Q Consensus 1033 EPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1066 (1156)
||+|||+.+.. +++. ..|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999988653 3343 348999999994
No 137
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.74 E-value=2e-17 Score=190.24 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=69.3
Q ss_pred CCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 001108 1005 VSGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 1005 ~~~LSgGqrq------rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
+..||||||| |+++|++|+.+|++|||||||+|||+.++..+++.|+++.++|.|||++||++. +.+.||++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEE
Confidence 3579999999 677888888999999999999999999999999999998777899999999964 67899999
Q ss_pred EEEec
Q 001108 1079 FLMKR 1083 (1156)
Q Consensus 1079 ~~l~~ 1083 (1156)
+.|..
T Consensus 324 ~~l~~ 328 (339)
T 3qkt_A 324 IRISL 328 (339)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99863
No 138
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.74 E-value=1.4e-19 Score=206.86 Aligned_cols=131 Identities=18% Similarity=0.120 Sum_probs=103.7
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh-cccceEEEeccCCCCCCCCCHHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYES 961 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~~Tv~e~ 961 (1156)
+++++|+.+++|++++|+||||||||||+++|+|... +.+|.|.++|.+.-.. ..++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~--~~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP--KEERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC--TTSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCcEEEECCeeccccccchhEEEEEe--------------
Confidence 6899999999999999999999999999999999865 3479999998642110 0112222221
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001108 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1156)
Q Consensus 962 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1041 (1156)
+ |||+||++||+||..+|++|+|||||+.
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~---- 252 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS---- 252 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH----
Confidence 1 8999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1042 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1042 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
.+++.|+.+...+.|+|+|+|+++ ..+.+||+++|.+|.
T Consensus 253 ---e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 253 ---EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 356677776543458999999987 577899999998763
No 139
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.74 E-value=2.4e-22 Score=216.68 Aligned_cols=177 Identities=10% Similarity=-0.019 Sum_probs=108.4
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh----hcccceEEEeccCCCCCCCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQNDIHSPFVT 957 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~~~~~~~T 957 (1156)
.-|+||||+|++|++++|+||||||||||+++|+|.. + |.|.+ |.+... ...++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 3599999999999999999999999999999999965 2 66777 654321 112356789999765443322
Q ss_pred H-HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH-----HHHHhcCCCEEEE
Q 001108 958 I-YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI-----AVELVANPSIIFM 1031 (1156)
Q Consensus 958 v-~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~i-----A~aL~~~p~illL 1031 (1156)
. .+++.+ ..+..+ .... .+..++++++...+. +.+ ..||||||||++| +++|+.+|++++|
T Consensus 85 ~~~~~l~~-~~~~~~-~~g~--~~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 85 KNEDFLEY-DNYANN-FYGT--LKSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp HTTCEEEE-EEETTE-EEEE--EHHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred hccchhhh-hhcccc-cCCC--cHHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 1 111110 001100 0000 123466677664432 111 2589999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-------CCCEEEEEecCCcHHHHHhcCeE
Q 001108 1032 DEPTSGLDARAAAIVMRTVRNTVD-------TGRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 1032 DEPTsgLD~~~~~~i~~~l~~~~~-------~g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
||||+++|..+...|.+.+++... .+.+.|++.|+++ +.+..++++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~i 204 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNY 204 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHH
Confidence 999999999999999888877643 3455566666554 344444444
No 140
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.72 E-value=2.1e-21 Score=209.31 Aligned_cols=152 Identities=14% Similarity=0.098 Sum_probs=95.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1156)
..-|+|||+.+++|++++|+||||||||||+++|+|.+ | |+|.+ |.++....+ ++.++|++|++..++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34799999999999999999999999999999999987 4 78888 776543222 3568899997644433
Q ss_pred CCH-HHHHHH---HhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccc
Q 001108 241 MTV-RETLAF---SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (1156)
Q Consensus 241 lTV-~E~l~f---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1156)
++. .+++.+ ...+.+ .. ...++.+++...+ ..+
T Consensus 83 ~~~~~~~l~~~~~~~~~~g--~~------------------------------------~~~i~~~l~~~~~-----~il 119 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFYG--TL------------------------------------KSEYDKAKEQNKI-----CLF 119 (218)
T ss_dssp HHHTTCEEEEEEETTEEEE--EE------------------------------------HHHHHHHHHTTCE-----EEE
T ss_pred hhhccchhhhhhcccccCC--Cc------------------------------------HHHHHHHHhCCCc-----EEE
Confidence 220 111110 000000 00 0112333332221 122
Q ss_pred cccccCCCChhHHHHHHH-----HHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHH
Q 001108 317 GDEMIRGISGGQKKRVTT-----GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 370 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsi-----a~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~ 370 (1156)
. ..||||||||+++ +++++.+|++++|||||+++|..+...|.+.|....
T Consensus 120 ~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~ 174 (218)
T 1z6g_A 120 E----MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLN 174 (218)
T ss_dssp E----ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred E----ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 1 3599999999999 899999999999999999999999999998887654
No 141
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.72 E-value=1.1e-20 Score=201.96 Aligned_cols=180 Identities=12% Similarity=0.098 Sum_probs=110.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
..+++| ..+++|++++|+||||||||||+++|+|.++. +.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 457888 69999999999999999999999999999852 23333333322211 1235689999987777778887
Q ss_pred HHHHHHhhhcC----CCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHH------HHHcCCcccccc
Q 001108 245 ETLAFSARCQG----VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY------LKVLGLDVCADT 314 (1156)
Q Consensus 245 E~l~f~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~dt 314 (1156)
+++.+.....+ .+...+ +.. ..++.. ++.+|+...++.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~---~~~-----------------------------~~~~~~~~~~~~l~~~gl~~~~~~ 130 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQ---PVR-----------------------------AAAATGVPVLIEVDLAGARAIKKT 130 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHH---HHH-----------------------------HHHHHTCCEEEECCHHHHHHHHHH
T ss_pred CCceeehhhcCchhhcCCcHH---HHH-----------------------------HHHHcCCeEEEEeCHHHHHHHHHh
Confidence 77643211110 000000 000 011111 222333332332
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCC----CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGL----DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgL----D~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1156)
. .+.|| +|+.+|++++|||||+|| |+..+..+.+.++++.+..+.|+ +.++|+..++..
T Consensus 131 ~-----~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tv-i~vtHdl~~~~~ 193 (207)
T 1znw_A 131 M-----PEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDK-VVVNRRLESACA 193 (207)
T ss_dssp C-----TTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSE-EEECSSHHHHHH
T ss_pred c-----CCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcE-EEECCCHHHHHH
Confidence 2 23466 899999999999999998 78899999999998765444454 557899999999
Q ss_pred hcCeEEEEc
Q 001108 391 LFDDIILLS 399 (1156)
Q Consensus 391 ~~D~iilL~ 399 (1156)
+||+|++|.
T Consensus 194 ~~d~i~~l~ 202 (207)
T 1znw_A 194 ELVSLLVGT 202 (207)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhc
Confidence 999999985
No 142
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.72 E-value=6.5e-19 Score=202.09 Aligned_cols=173 Identities=16% Similarity=0.154 Sum_probs=127.4
Q ss_pred eceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---------ccceEEEEcCCCC-CC
Q 001108 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---------PQRTAAYISQHDN-HI 238 (1156)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---------~~~~~~yv~Q~d~-~~ 238 (1156)
+.+|+.+++|++++|+||||||||||++.|+|.+.++ +|+|.++|.++.... .++.++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688999999999999999999999999999999887 899999998865421 1246899999987 88
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||+|++.++... +. + ..+++.+|+.+..+..+
T Consensus 225 p~~tv~e~l~~~~~~-~~-----------------------d-------------------~~lldt~Gl~~~~~~~~-- 259 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-GY-----------------------D-------------------VVLCDTSGRLHTNYSLM-- 259 (359)
T ss_dssp HHHHHHHHHHHHHHT-TC-----------------------S-------------------EEEEECCCCSSCCHHHH--
T ss_pred hhhhHHHHHHHHHhC-CC-----------------------H-------------------HHHHHhcCCChhhhhHH--
Confidence 899999999876421 00 0 00233456665544443
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCc--cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC---------hhh
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP---------APE 387 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~--vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~---------~~~ 387 (1156)
..|| |||++||++++.+|+ +|+|| ||+|||+.... +.+....+.|+|+ ++|. ...
T Consensus 260 ---~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~gG~~lsi 325 (359)
T 2og2_A 260 ---EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVSV 325 (359)
T ss_dssp ---HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EESCTTCSCTHHHHHH
T ss_pred ---HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE-EecCcccccccHHHHH
Confidence 3588 999999999999999 99999 99999987653 2232223455555 5552 223
Q ss_pred HHhhcCeEEEEcCCeE
Q 001108 388 TYDLFDDIILLSDGQI 403 (1156)
Q Consensus 388 ~~~~~D~iilL~~G~i 403 (1156)
+....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 4455678888888763
No 143
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.71 E-value=8.2e-20 Score=215.82 Aligned_cols=174 Identities=17% Similarity=0.096 Sum_probs=135.4
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc---cCCh--------hcccceEEEeccC
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQ--------ETFARISGYCEQN 949 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~---~~~~--------~~~~~~~gyv~q~ 949 (1156)
..+|+++ +.|.+|++++|+||||||||||+++|+|... +..|.|.++|. +... ...++.++|++|+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 4589999 9999999999999999999999999999766 45799999997 3322 2355779999995
Q ss_pred -CCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001108 950 -DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028 (1156)
Q Consensus 950 -~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~i 1028 (1156)
+..++.+|+.+|+.+.+....... .+++ .+.+. ...||+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~~----------~~v~------~~ld~------l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDRG----------QHVL------LIMDS------LTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTT----------CEEE------EEEEC------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCC----------CCHH------HHHHh------HHHHHHHH-HHHHHH---hCCCcc
Confidence 455677899999988664321100 0011 11122 24699999 999999 888988
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1029 IFMDEPTSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1029 llLDEPTsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|+|||+.+...+.++++++.+ + |. ||++++||++ ...+|++++|.+ |+++..|+.
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 999999999999999999865 3 64 9999999987 356899999975 788888753
No 144
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.71 E-value=1e-19 Score=214.93 Aligned_cols=179 Identities=15% Similarity=0.136 Sum_probs=138.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCc---cCCCc--------CccceEEEEcC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH---DMDEF--------VPQRTAAYISQ 233 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~---~~~~~--------~~~~~~~yv~Q 233 (1156)
..+|+++ +.+.+|++++|+|||||||||||++|+|..+++ +|.|.++|. ++.++ ..++.++||+|
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 4589999 999999999999999999999999999999998 999999998 44332 13478999999
Q ss_pred C-CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccc
Q 001108 234 H-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1156)
Q Consensus 234 ~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1156)
+ +..++.+||.+|+.+.++... .+. .+ .....
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~--------------~~~------~~---------------------------v~~~l 253 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFR--------------DRG------QH---------------------------VLLIM 253 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH--------------TTT------CE---------------------------EEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH--------------hCC------CC---------------------------HHHHH
Confidence 5 556778899999988653210 000 00 00001
Q ss_pred cccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHh--cCCe-----EEEEEecCh
Q 001108 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI--NSGT-----AVISLLQPA 385 (1156)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~--~~~t-----~ii~i~q~~ 385 (1156)
| .+..+|||| |||+|| +.+|++ |+|||+.+...+.+.+.++.+. .++. +|+.++|+.
T Consensus 254 d------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl 317 (438)
T 2dpy_A 254 D------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQ 317 (438)
T ss_dssp E------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCS
T ss_pred H------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCc
Confidence 1 123599999 999999 788887 9999999999999999876431 1242 566566776
Q ss_pred hhHHhhcCeEEEEcCCeEEEEcChhHH
Q 001108 386 PETYDLFDDIILLSDGQIVYQGPRELV 412 (1156)
Q Consensus 386 ~~~~~~~D~iilL~~G~iv~~G~~~~~ 412 (1156)
. ...+|++++|.+|+++..|++.++
T Consensus 318 ~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 318 Q--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp C--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred c--chhhceEEEEeCcEEEEeCCHHHc
Confidence 6 678999999999999999988765
No 145
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.71 E-value=1.3e-17 Score=191.59 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 001108 1007 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~ 1077 (1156)
.||+|||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|+++|. + + .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998873 799999994 3 2 7899
Q ss_pred EEEEecCcEEEEecCC
Q 001108 1078 LFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1078 v~~l~~Gg~~~~~g~~ 1093 (1156)
+++|++ |+++..|+.
T Consensus 337 i~~l~~-G~i~~~g~~ 351 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADE 351 (359)
T ss_dssp EEEEET-TEEEECCCT
T ss_pred EEEEEC-CEEEecCCH
Confidence 999986 688888875
No 146
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.70 E-value=4.3e-18 Score=192.17 Aligned_cols=182 Identities=16% Similarity=0.148 Sum_probs=115.3
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEE-EEEEcCccCChhcccceEEEeccCCCCCCCCCHHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~ 961 (1156)
+|+++++.+++|++++|+||||||||||++.|+|... +..| .|.+.+.........+.+.++.+... +++.++
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~~ 97 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSDS 97 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhccc
Confidence 6999999999999999999999999999999999643 1124 45443333332222222233333221 122344
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH-HHHHHHHHHHhcCCCEEEEeCCCC---C
Q 001108 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS---G 1037 (1156)
Q Consensus 962 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq-rqrl~iA~aL~~~p~illLDEPTs---g 1037 (1156)
+.... + +.++..+.++++++...+. +.+. ...+|.+| +||+. |+++..+|++|||||||+ +
T Consensus 98 l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~ 162 (296)
T 1cr0_A 98 LKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSA 162 (296)
T ss_dssp HHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----
T ss_pred cccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCC
Confidence 43321 1 1122233344444322221 1111 13589998 66666 999999999999999999 5
Q ss_pred ---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCC--cH-------------------HHHHhcCeEEEEecCc
Q 001108 1038 ---LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQP--SI-------------------DIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1038 ---LD~-~~~~~i~~~l~~~~~~-g~tvi~~~H~~--~~-------------------~i~~~~d~v~~l~~Gg 1085 (1156)
+|. .....+++.|++++++ |+|||+++|+. .. .+...||++++|.+|.
T Consensus 163 ~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 163 SGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCc
Confidence 565 6678899999998754 99999999995 21 4667899999998763
No 147
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.68 E-value=4.6e-18 Score=194.24 Aligned_cols=133 Identities=13% Similarity=0.160 Sum_probs=100.1
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1156)
+++++|+.+++|++++|+|||||||||||++|+|.++|+ +|.|+++|.+ +... ++ + .
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~~-------~~---~-~------- 216 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIVF-------KH---H-K------- 216 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCCC-------SS---C-S-------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--cccc-------cc---c-h-------
Confidence 789999999999999999999999999999999999998 9999999864 1100 00 0 0
Q ss_pred HHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCCh
Q 001108 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (1156)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1156)
+. .+ .+ .+ |
T Consensus 217 -------~~--------------------------------------------------i~-------~~-----~g--g 225 (330)
T 2pt7_A 217 -------NY--------------------------------------------------TQ-------LF-----FG--G 225 (330)
T ss_dssp -------SE--------------------------------------------------EE-------EE-----CB--T
T ss_pred -------hE--------------------------------------------------EE-------EE-----eC--C
Confidence 00 00 00 01 8
Q ss_pred hHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 327 GqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
||+||++||++|..+|++++|||||+. ++.+.|+.+. ..+.++++++|. .. +.+.+|++++|.+|+.
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~-~g~~tvi~t~H~-~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC-SGHKGTLTTLHA-GS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH-TTCCCEEEEEEC-SS-HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh-cCCCEEEEEEcc-cH-HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 3456666543 233355555544 33 8889999999998853
No 148
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.67 E-value=1.5e-16 Score=159.79 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=69.6
Q ss_pred CCCCCHHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 001108 1005 VSGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA------~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
+..||||||||++|| ++|+.+|++|||||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.||++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 457999999999886 899999999999999999999999999999999877799999999997 356889999
Q ss_pred EEEe
Q 001108 1079 FLMK 1082 (1156)
Q Consensus 1079 ~~l~ 1082 (1156)
++|+
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9995
No 149
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.66 E-value=2.2e-16 Score=191.87 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=66.4
Q ss_pred ccCCC-ChhHHHHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 320 MIRGI-SGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 320 ~~~~L-SGGqrqRvsia~al~~~p--~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
.+..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|++++. +.+ ||.++|.. ++...||+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~-vi~itH~~-~~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQ-VLVVTHLA-QIAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSE-EEEECCCH-HHHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCE-EEEEecCH-HHHHhCCEEE
Confidence 35567 999999999999999999 99999999999999999999999999864 344 55567774 4667899999
Q ss_pred EEcCC
Q 001108 397 LLSDG 401 (1156)
Q Consensus 397 lL~~G 401 (1156)
+|.+|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99654
No 150
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.66 E-value=9.7e-16 Score=176.19 Aligned_cols=81 Identities=21% Similarity=0.328 Sum_probs=66.9
Q ss_pred cccCCCChhHHH------HHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 001108 319 EMIRGISGGQKK------RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1156)
Q Consensus 319 ~~~~~LSGGqrq------Rvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~ 392 (1156)
..+..||||||| |+++|++++.+|++|||||||+|||+..+..+++.|+++.. .+.++ +.++|+ .++.+.|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~v-i~~sH~-~~~~~~~ 320 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQV-ILVSHD-EELKDAA 320 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEE-EEEESC-GGGGGGC
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEE-EEEECh-HHHHHhC
Confidence 345679999999 67788888999999999999999999999999999998754 34454 446676 5788999
Q ss_pred CeEEEEc--CCe
Q 001108 393 DDIILLS--DGQ 402 (1156)
Q Consensus 393 D~iilL~--~G~ 402 (1156)
|+|++|. +|.
T Consensus 321 d~~~~l~~~~g~ 332 (339)
T 3qkt_A 321 DHVIRISLENGS 332 (339)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEecCCc
Confidence 9999985 454
No 151
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.65 E-value=2.2e-18 Score=195.06 Aligned_cols=128 Identities=9% Similarity=-0.013 Sum_probs=95.6
Q ss_pred ceeE-EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHH
Q 001108 170 DVSG-VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248 (1156)
Q Consensus 170 ~vs~-~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1156)
|++. .+++|++++|+||||||||||+++|+|.++|. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 4444 37899999999999999999999999999874 332 358999999888888 9999985
Q ss_pred HHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 001108 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1156)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1156)
+... .+.... .+ ...+...|+.++ ....+..+ ..+||||
T Consensus 143 ~~~~-~g~~~~-------------------~d---------------~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPES-------------------YN---------------RRALMRFVTSVK-SGSDYACA-----PVYSHLH 181 (312)
T ss_dssp CTTC-TTSGGG-------------------BC---------------HHHHHHHHHHHH-TTCSCEEE-----EEEETTT
T ss_pred HHHh-cCCChH-------------------HH---------------HHHHHHHHHHhC-CCcccCCc-----ccCChhh
Confidence 4211 111000 00 112345566666 33333333 4699999
Q ss_pred HHHHHHHHHHhcCCccceeecCCCCCCH
Q 001108 329 KKRVTTGEMMVGPALALFMDEISTGLDS 356 (1156)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLD~ 356 (1156)
+||+++|++++.+|+|||||||+..+|+
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
No 152
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.65 E-value=3.1e-17 Score=185.15 Aligned_cols=185 Identities=14% Similarity=0.061 Sum_probs=112.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcee-EEEEcCccCCCcCccceEEEEcCCCCCCCCCCH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG-TVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1156)
..+|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.|.+.+.......+.+.++.|... +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 45899999999999999999999999999999999998775 57 66554432211000111111111110 111
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
.+++..+. + ...+....++.+++..++. +.+ ....
T Consensus 95 ~~~l~~~~--------------~------------------------~~~~~~~~~~~~l~~~~l~------i~~-~~~~ 129 (296)
T 1cr0_A 95 SDSLKREI--------------I------------------------ENGKFDQWFDELFGNDTFH------LYD-SFAE 129 (296)
T ss_dssp CHHHHHHH--------------H------------------------HHTHHHHHHHHHHSSSCEE------EEC-CCCS
T ss_pred ccccccCC--------------C------------------------CHHHHHHHHHHHhccCCEE------EEC-CCCC
Confidence 12221110 0 0011112233333322221 111 1235
Q ss_pred CChhH-HHHHHHHHHHhcCCccceeecCCC---C---CCH-HHHHHHHHHHHHHHHhcCCeEEEEEecCh--h-------
Q 001108 324 ISGGQ-KKRVTTGEMMVGPALALFMDEIST---G---LDS-STTFQIVNCLRQNIHINSGTAVISLLQPA--P------- 386 (1156)
Q Consensus 324 LSGGq-rqRvsia~al~~~p~vllLDEpts---g---LD~-~~~~~i~~~L~~~~~~~~~t~ii~i~q~~--~------- 386 (1156)
+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|+++++..+.++|+ ++|.. .
T Consensus 130 ~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~-vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 130 AETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV-ICHLKNPDKGKAHEE 207 (296)
T ss_dssp CCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEE-EEECC----------
T ss_pred CCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EEecCcccccccccc
Confidence 88888 67777 999999999999999999 5 455 66678999999988755555555 55553 3
Q ss_pred -------------hHHhhcCeEEEEcCCeE
Q 001108 387 -------------ETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 387 -------------~~~~~~D~iilL~~G~i 403 (1156)
.+.+.||+|++|.+|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 68889999999998874
No 153
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.64 E-value=2.1e-17 Score=213.01 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=112.8
Q ss_pred eEEeeeeeEEEeC-------CeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEE-EeccCCCC
Q 001108 881 LVLLNGVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISG-YCEQNDIH 952 (1156)
Q Consensus 881 ~~~L~~vs~~i~~-------Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g-yv~q~~~~ 952 (1156)
..+++||++.+++ |++++|+|||||||||||++| |... . .+ ++| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~--~----------------~a-qiG~~Vpq~~~- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA--V----------------MA-QMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--H----------------HH-TTTCCEESSEE-
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--H----------------Hh-heeEEeccCcC-
Confidence 4589999999987 999999999999999999999 8643 1 12 245 8999753
Q ss_pred CCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001108 953 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1032 (1156)
Q Consensus 953 ~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLD 1032 (1156)
.+||.|++.. + +++.+.... +.+.+|+|+++ +++|++++.+|+++|||
T Consensus 828 --~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 828 --RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVD 875 (1022)
T ss_dssp --EECCCSBEEE----E--------------------CC--------------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred --CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 3555554421 1 111111111 12457887775 99999999999999999
Q ss_pred CCCCCCCHHH-HHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1033 EPTSGLDARA-AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1033 EPTsgLD~~~-~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
|||+|+|+.. ...++.+|+.+.++ |+++|++||+++. +...+|++.++. |++.
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el-~~~~~d~~~v~~--g~~~ 930 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSL-VEDYSQNVAVRL--GHMA 930 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH-HHHTSSCSSEEE--EEEE
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-HHHhCCcceeec--CeEE
Confidence 9999999987 46688999999876 9999999999763 556688888764 5666
No 154
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.64 E-value=1.4e-17 Score=182.53 Aligned_cols=164 Identities=16% Similarity=0.170 Sum_probs=102.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhc--CCCCCCeEEEEEEEcCccCChh--cccceEEEeccCCCCCCCCCHHHHHHH
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYITGNITISGYPKKQE--TFARISGYCEQNDIHSPFVTIYESLLF 964 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~--g~~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~q~~~~~~~~Tv~e~l~~ 964 (1156)
+.|++|++++|+||||||||||+++|+ |... +..|.+.+++...... ...+.+||.+|+....+.+++.++...
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccc
Confidence 378999999999999999999999999 5412 1245667776543221 122345666665433333333332211
Q ss_pred HHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC-----
Q 001108 965 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----- 1039 (1156)
Q Consensus 965 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD----- 1039 (1156)
..... ..+. ... ....+.++......+..-..+|++|+|||||++||
T Consensus 103 ~~~~~-------------~~~~----------~~~-----~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~ 154 (251)
T 2ehv_A 103 VVGLP-------------SEEK----------FVL-----EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEE 154 (251)
T ss_dssp -------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSG
T ss_pred ccccc-------------cccc----------eec-----cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCH
Confidence 10000 0000 000 01234455555555555568999999999999998
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHH---------HHhc-CeEEEEec
Q 001108 1040 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI---------FEAF-DELFLMKR 1083 (1156)
Q Consensus 1040 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i---------~~~~-d~v~~l~~ 1083 (1156)
+..+..++++++.+.+.|+|||+++|+++. . ...| |++++|+.
T Consensus 155 ~~~~~~l~~l~~~l~~~g~tii~vtH~~~~-~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 155 RKIREVLLKLNTILLEMGVTTILTTEAPDP-QHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp GGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECCCCC-CcccccccChhhEeeeEEEEEee
Confidence 677777999999988889999999999863 4 4678 99999963
No 155
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.62 E-value=2.4e-18 Score=194.78 Aligned_cols=158 Identities=9% Similarity=-0.000 Sum_probs=110.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhC
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~ 970 (1156)
+++|+++||+||||||||||+++|+|...+ . +|. +.++|++|++.+++. |++||+.+... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--W------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR-K- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--S------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC-T-
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--c------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh-c-
Confidence 899999999999999999999999996542 1 121 348999999988887 99999864211 1
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 001108 971 SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050 (1156)
Q Consensus 971 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l 1050 (1156)
..+.....+.+.++++.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||++.+|+.. ..+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 1122222345677888877 44443332 3699999999999999999999999999999998521 122
Q ss_pred HHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1051 ~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+++. + .+|++.|+.+.......+|.+.+.+
T Consensus 215 ~~~~--D-~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 215 SDLF--D-FSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp GGGC--S-EEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred HHhc--C-cEEEEECCHHHHHHHHHHHHHHHHh
Confidence 3332 3 4566677655433345566555543
No 156
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.62 E-value=4.9e-16 Score=197.72 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=102.9
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhc--------CCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCC
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--------GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH 952 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~--------g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~ 952 (1156)
..+++||++.+.+|++++|+|||||||||||++++ |..- +..+. . ++.+ +
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~v--pa~~~-~--------------~~~~---d-- 706 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV--PCESA-E--------------VSIV---D-- 706 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCB--SEEEE-E--------------EECC---S--
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcc--ccccc-c--------------chHH---H--
Confidence 46899999999999999999999999999999993 3221 11110 0 1110 0
Q ss_pred CCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCEEE
Q 001108 953 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIF 1030 (1156)
Q Consensus 953 ~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL--~~~p~ill 1030 (1156)
+++..+++.+ .. ..++|++++++..+|++| +.+|++||
T Consensus 707 --------------------------------~i~~~ig~~d---~l-----~~~lStf~~e~~~~a~il~~a~~~sLlL 746 (934)
T 3thx_A 707 --------------------------------CILARVGAGD---SQ-----LKGVSTFMAEMLETASILRSATKDSLII 746 (934)
T ss_dssp --------------------------------EEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred --------------------------------HHHHhcCchh---hH-----HHhHhhhHHHHHHHHHHHHhccCCcEEE
Confidence 0011111111 11 135788888888888888 89999999
Q ss_pred EeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1031 MDEPTSGLDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1031 LDEPTsgLD~~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
|||||+|+|+.....+ +.+++.+.+ .|+|||++||+. ++.+.+|++..+.+ |++...+
T Consensus 747 LDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~ 806 (934)
T 3thx_A 747 IDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALT 806 (934)
T ss_dssp EESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEe
Confidence 9999999999888777 777787776 499999999996 45688999888875 5665544
No 157
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.62 E-value=1.9e-17 Score=181.55 Aligned_cols=155 Identities=9% Similarity=0.001 Sum_probs=97.6
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCH
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 958 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv 958 (1156)
+++.+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 3467999999999999999999999999999999999853 111222 2355689999985 6778999
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001108 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1156)
Q Consensus 959 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgL 1038 (1156)
.|++.+......... ......+.+.+.++.+ .+..+.. +..||+||+||+.+ ++++.+|+++|||||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999876532211111 1111122234444433 2222333 24699999999988 5788899999999998888
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 001108 1039 DARAAAIVMRTVRNTVDTGRTVVCTIHQ 1066 (1156)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1066 (1156)
|.. ++++ .+.||++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 764 2233 37899999996
No 158
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.61 E-value=7.9e-17 Score=177.90 Aligned_cols=131 Identities=18% Similarity=0.250 Sum_probs=96.0
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeE-EEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~ 961 (1156)
+|+++| +++|++++|+||||||||||+++|+|... +. .|.|.++|.++. |++|....+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~---------~~~~~~~~~-------- 74 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE---------YVFKHKKSI-------- 74 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC---------SCCCCSSSE--------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce---------eecCCccee--------
Confidence 689999 89999999999999999999999999754 33 689999887642 233321100
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001108 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1156)
Q Consensus 962 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1041 (1156)
.. . +.+++.. ..| |++||++|..+|++|+||||| |+.
T Consensus 75 ------v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 75 ------VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ------EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ------ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 00 0 0122211 123 899999999999999999999 998
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1042 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1042 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+...+ ++. +..|.+|++++|+.+ ..+.+|+++.|..
T Consensus 112 ~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 86544 333 356999999999976 4677888877754
No 159
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.61 E-value=3.4e-17 Score=179.58 Aligned_cols=140 Identities=15% Similarity=0.012 Sum_probs=86.6
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1156)
..+.+|+|+||++++|++++|+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 3456999999999999999999999999999999999975 222232 1356799999975 777899
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
+.|++.+............ .+. ..+...++.+ .+..+.. ..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~-----------------~~~---------------~~~~~~L~~l--~~~~~~~-----~~ 115 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHPDA-----------------FDN---------------DLMHRTLKNI--VEGKTVE-----VP 115 (245)
T ss_dssp HHHHHHHHTTCCCTTSGGG-----------------BCH---------------HHHHHHHHHH--HTTCCEE-----EC
T ss_pred HhHhhhhhccCCCCCCccc-----------------ccH---------------HHHHHHHHHH--HCCCCee-----cc
Confidence 9999877543221110000 000 0111222222 2333333 34
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHH
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 357 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~ 357 (1156)
.+|+||+||+.+ ++++.+|++++||||...+|..
T Consensus 116 ~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 116 TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred cccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 699999999988 5788899999999998888763
No 160
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.61 E-value=2.6e-17 Score=188.75 Aligned_cols=189 Identities=14% Similarity=0.147 Sum_probs=129.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++.++++..+.. +..+|+++ +.|.+|+++||+||||||||||+++|+|... +..|.|.+.|.+.
T Consensus 45 ~i~~~~l~~~~~t------------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~ 109 (347)
T 2obl_A 45 PLLRQVIDQPFIL------------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERG 109 (347)
T ss_dssp STTCCCCCSEECC------------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCH
T ss_pred CeeecccceecCC------------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccH
Confidence 3556666655531 23589999 9999999999999999999999999999766 3478898888642
Q ss_pred Ch----------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCC
Q 001108 935 KQ----------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 1004 (1156)
Q Consensus 935 ~~----------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~ 1004 (1156)
.. ..+.+.+.++.|.+. ...+.+.-.... ..+.+.....+ .+... .. ..
T Consensus 110 ~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~------------~~~ae~~~~~~-~~vl~-~l--d~ 168 (347)
T 2obl_A 110 REVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA------------TTIAEYFRDQG-KNVLL-MM--DS 168 (347)
T ss_dssp HHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH------------HHHHHHHHTTT-CEEEE-EE--ET
T ss_pred HHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH------------HHHHHHHHhcc-ccHHH-HH--hh
Confidence 11 123456788887542 222222110000 00011111101 01000 00 01
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCcHHHHHhcCe
Q 001108 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPSIDIFEAFDE 1077 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~~~H~~~~~i~~~~d~ 1077 (1156)
+..||+|| ||+++| +.+|++ |+|||+.....+.++++++.+ .|. ||++++||++ ...||+
T Consensus 169 ~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~ 235 (347)
T 2obl_A 169 VTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDE 235 (347)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHH
T ss_pred HHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhh
Confidence 34699999 899999 688887 999999999999999999864 477 9999999987 356899
Q ss_pred EEEEecCcEEEEecCC
Q 001108 1078 LFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1078 v~~l~~Gg~~~~~g~~ 1093 (1156)
+++|.+ |+++..|++
T Consensus 236 v~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 236 VRSILD-GHIVLTREL 250 (347)
T ss_dssp HHHHCS-EEEEBCHHH
T ss_pred eEEeeC-cEEEEeCCH
Confidence 999985 799988763
No 161
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.59 E-value=7.9e-17 Score=174.23 Aligned_cols=152 Identities=17% Similarity=0.154 Sum_probs=93.7
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC-----CeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHH
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-----GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~-----~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~ 963 (1156)
+-|++|++++|+||||||||||+++|+|.... +...+.+++++..... .+.+++++|...+.+. |+.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 47999999999999999999999999983221 1123567777653210 0112233333222211 2222221
Q ss_pred HHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH-HHHHHHHHHHHhc-------CCCEEEEeCCC
Q 001108 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 1035 (1156)
Q Consensus 964 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG-qrqrl~iA~aL~~-------~p~illLDEPT 1035 (1156)
+. ...+.+ +++.+..+.+++. +|++|+|||||
T Consensus 96 ----------------------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 ----------------------------VA------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp ----------------------------EE------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred ----------------------------EE------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 10 012333 3444566666665 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCcH---HHHHhcCeEEEEecC
Q 001108 1036 SGLDAR-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSI---DIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1036 sgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~---~i~~~~d~v~~l~~G 1084 (1156)
+++|+. . ...+++.|+++++ .|+|||+++|..+. .+...+|+++.|++|
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999984 2 2367777777754 49999999994331 256678999999875
No 162
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.58 E-value=9.1e-16 Score=194.66 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=96.7
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHH
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 959 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~ 959 (1156)
+..+++||++++++|++++|+|||||||||||+++++..... . .|...... ...++++ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q------~g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-Q------IGSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-H------HTCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-h------cCccccch--hhhhhHH---HHHHHhCChH
Confidence 356899999999999999999999999999999997531100 0 01000000 0011111 1111111111
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 001108 960 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039 (1156)
Q Consensus 960 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD 1039 (1156)
+++ .. +.+.+|+|++|++.|+++ +.+|++|||||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 11 134689999999999998 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCEEEEEecCCcHHHHHhcCe
Q 001108 1040 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDE 1077 (1156)
Q Consensus 1040 ~~~~~~i~-~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~ 1077 (1156)
+.....+. .+++.+.+ .|+|||++||+++ +.+++|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~ 804 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence 99888886 77777765 5999999999975 4455554
No 163
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.57 E-value=1.5e-15 Score=193.21 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=69.7
Q ss_pred CCCChhHHHHHHHHHHH--hcCCccceeecCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 322 RGISGGQKKRVTTGEMM--VGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al--~~~p~vllLDEptsgLD~~~~~~i-~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
+++|+|+++++.+|+++ +.+|+++||||||+|||+.....+ +..++.+....+.+++ .++|+ .++..++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl-~aTH~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCM-FATHF-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEE-EEESC-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEE-EEcCc-HHHHHHhccccee
Confidence 36899998888888888 999999999999999999998888 4556665542344544 46666 5777899999999
Q ss_pred cCCeEEEEcChhHH
Q 001108 399 SDGQIVYQGPRELV 412 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (1156)
.+|++.+.++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988876654
No 164
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.56 E-value=3e-16 Score=179.98 Aligned_cols=180 Identities=14% Similarity=0.153 Sum_probs=124.5
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc----------CccceEEEEcCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----------VPQRTAAYISQH 234 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~----------~~~~~~~yv~Q~ 234 (1156)
..+|+++ +.+.+|++++|+||||||||||+++|+|...|+ .|.|.+.|++..+. ..++.+.+++|.
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 4589999 999999999999999999999999999999998 89999998652110 123567888875
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+. ...+.+.-.... ..+ .+ .....| .+.
T Consensus 135 ~~-----~~~~r~~~~~~~----------~~~--------------------------------ae-~~~~~~----~~v 162 (347)
T 2obl_A 135 DR-----PALERMKAAFTA----------TTI--------------------------------AE-YFRDQG----KNV 162 (347)
T ss_dssp TS-----CHHHHHHHHHHH----------HHH--------------------------------HH-HHHTTT----CEE
T ss_pred CC-----CHHHHHHHHHHH----------HHH--------------------------------HH-HHHhcc----ccH
Confidence 42 222222111000 000 00 000011 111
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCe-----EEEEEecChhhHH
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT-----AVISLLQPAPETY 389 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t-----~ii~i~q~~~~~~ 389 (1156)
.+--+.+..+|+|| |||++| +++|++ |+|||+.....+.+.++++....+++ +|+..+|+.. .
T Consensus 163 l~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~ 230 (347)
T 2obl_A 163 LLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--D 230 (347)
T ss_dssp EEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--C
T ss_pred HHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--C
Confidence 10001234699999 899999 577776 99999999999999998754212344 5666677766 6
Q ss_pred hhcCeEEEEcCCeEEEEcChhHH
Q 001108 390 DLFDDIILLSDGQIVYQGPRELV 412 (1156)
Q Consensus 390 ~~~D~iilL~~G~iv~~G~~~~~ 412 (1156)
.+||++++|.+|+++..|+..++
T Consensus 231 ~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 231 PIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHHHHHHCSEEEEBCHHHHTT
T ss_pred hhhhheEEeeCcEEEEeCCHHHc
Confidence 78999999999999999987765
No 165
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.55 E-value=4e-15 Score=181.15 Aligned_cols=155 Identities=13% Similarity=0.095 Sum_probs=110.7
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHh
Q 001108 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSA 251 (1156)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 251 (1156)
++.+++|++++|+||||||||||++.++|...+. |+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 5699999999999999999999999999987653 32 12455666531 01221110
Q ss_pred hhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHH
Q 001108 252 RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331 (1156)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqR 331 (1156)
+ .++ +. +. +...|+....+. .+..|||||+||
T Consensus 330 ~--------------------~g~----~~------------------~~-~~~~g~~~~~~~-----~p~~LS~g~~q~ 361 (525)
T 1tf7_A 330 S--------------------WGM----DF------------------EE-MERQNLLKIVCA-----YPESAGLEDHLQ 361 (525)
T ss_dssp T--------------------TSC----CH------------------HH-HHHTTSEEECCC-----CGGGSCHHHHHH
T ss_pred H--------------------cCC----CH------------------HH-HHhCCCEEEEEe-----ccccCCHHHHHH
Confidence 0 000 00 01 123455444433 345699999999
Q ss_pred HHHHHHHhcCCccceeecCCCCCCHH-----HHHHHHHHHHHHHHhcCCeEEEEEecCh----------hhHHhhcCeEE
Q 001108 332 VTTGEMMVGPALALFMDEISTGLDSS-----TTFQIVNCLRQNIHINSGTAVISLLQPA----------PETYDLFDDII 396 (1156)
Q Consensus 332 vsia~al~~~p~vllLDEptsgLD~~-----~~~~i~~~L~~~~~~~~~t~ii~i~q~~----------~~~~~~~D~ii 396 (1156)
+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+.. .+.|+|+ ++|.. ..+..++|+|+
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvil-vsh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLF-TNTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEE-EEECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEE-EECcccccCcccccCcccceeeeEEE
Confidence 99999999999999999 99999999 88888898887653 4555555 45554 66778999999
Q ss_pred EEcCCe
Q 001108 397 LLSDGQ 402 (1156)
Q Consensus 397 lL~~G~ 402 (1156)
+|.+|+
T Consensus 439 ~L~~ge 444 (525)
T 1tf7_A 439 LLQYVE 444 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999886
No 166
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.55 E-value=3.9e-16 Score=195.43 Aligned_cols=133 Identities=20% Similarity=0.138 Sum_probs=97.2
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHH
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 960 (1156)
..+++|||++ |++++|+|||||||||||++|+|.... ...|.+. + . .+..+|+++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v----p--a--~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV----P--A--EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB----S--S--SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee----e--h--hccceeeHHH---hhccCCHHH
Confidence 4689999998 999999999999999999999985310 0112211 1 1 1234677766 334455554
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---C
Q 001108 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEP---T 1035 (1156)
Q Consensus 961 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL--~~~p~illLDEP---T 1035 (1156)
++. .++|+|+++++.+|++| +.+|+++||||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 432 13799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCcHHHHHhc
Q 001108 1036 SGLDARAA-AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1075 (1156)
Q Consensus 1036 sgLD~~~~-~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~ 1075 (1156)
++||+.+. ..+++.|++ .|+|||++||+.+ ..+.+
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~ 704 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG 704 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh
Confidence 99999875 567787776 4899999999864 44443
No 167
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.55 E-value=6.8e-16 Score=166.84 Aligned_cols=154 Identities=17% Similarity=0.116 Sum_probs=91.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC---C-CceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHH
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT---L-KVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~---~-~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1156)
+-+++|++++|+||||||||||+++|+|...+. . .-.|.|.+++.+.. ..+.++++.|...+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 579999999999999999999999999955441 0 01346666654310 01223333333222222 3333322
Q ss_pred HHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 001108 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1156)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1156)
+. ...++++
T Consensus 96 ~~-----------------------------------------------------------------------~~~~~~~ 104 (231)
T 4a74_A 96 VA-----------------------------------------------------------------------RAFNSNH 104 (231)
T ss_dssp EE-----------------------------------------------------------------------ECCSHHH
T ss_pred EE-----------------------------------------------------------------------ecCChHH
Confidence 11 1123332
Q ss_pred -HHHHHHHHHHhc-------CCccceeecCCCCCCHHH------------HHHHHHHHHHHHHhcCCeEEEEEecChh--
Q 001108 329 -KKRVTTGEMMVG-------PALALFMDEISTGLDSST------------TFQIVNCLRQNIHINSGTAVISLLQPAP-- 386 (1156)
Q Consensus 329 -rqRvsia~al~~-------~p~vllLDEptsgLD~~~------------~~~i~~~L~~~~~~~~~t~ii~i~q~~~-- 386 (1156)
++.+..++.++. +|+++++||||++||+.. ..++++.|+++++..+.| |+.++|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~t-vi~vtH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIA-VFVTNQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEEECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCe-EEEEeecccCc
Confidence 223444444444 899999999999999842 236778888777654444 555677444
Q ss_pred --hHHhhcCeEEEEcCCe
Q 001108 387 --ETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 387 --~~~~~~D~iilL~~G~ 402 (1156)
.+...+|.++.|++|+
T Consensus 184 g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 184 GHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ------CCSEEEEEEECT
T ss_pred chhhHhhceEEEEEEecC
Confidence 4888999999998753
No 168
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.54 E-value=3.3e-16 Score=176.51 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=102.1
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh-------cc--cceEEEeccCCCCCCCCCHHHHHH
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDIHSPFVTIYESLL 963 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~~~~~~Tv~e~l~ 963 (1156)
+|++++|+||||||||||+++|+|... +..|+|.+.|.+.... .+ ++.++|++|++...|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 789999999999999999999999755 2368999999875321 11 245899999998888889999997
Q ss_pred HHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHH
Q 001108 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDAR 1041 (1156)
Q Consensus 964 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~--illLDEPTsgLD~~ 1041 (1156)
+... +. .+ ..+++..|+.+..+.. ++..++||++|||+|+.+|+ +|.|| |+++
T Consensus 179 ~~~~-~~-~d----------~~llDt~G~~~~~~~~--------~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~---- 233 (304)
T 1rj9_A 179 AMKA-RG-YD----------LLFVDTAGRLHTKHNL--------MEELKKVKRAIAKADPEEPKEVWLVLD-AVTG---- 233 (304)
T ss_dssp HHHH-HT-CS----------EEEECCCCCCTTCHHH--------HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC----
T ss_pred HHHh-CC-CC----------EEEecCCCCCCchHHH--------HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH----
Confidence 6522 10 00 0122333333222221 45566899999999999999 44555 4444
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCC
Q 001108 1042 AAAIVMRTVRNTVDT-GRTVVCTIHQP 1067 (1156)
Q Consensus 1042 ~~~~i~~~l~~~~~~-g~tvi~~~H~~ 1067 (1156)
..+++.++++.+. |.|+|++||+.
T Consensus 234 --~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 234 --QNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp --THHHHHHHHHHHHHCCSEEEEECTT
T ss_pred --HHHHHHHHHHHHHcCCcEEEEECCc
Confidence 4555666666543 89999999974
No 169
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.53 E-value=3.1e-16 Score=177.03 Aligned_cols=156 Identities=13% Similarity=0.047 Sum_probs=84.8
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC-CCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCH
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 958 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv 958 (1156)
++.++++++|.| +|+|+||||||||+++|+|. .. +..| +.++|.+.......+.++|++|.+.....+|+
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv 80 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence 457999999998 99999999999999999996 33 3466 77777665332223457899998887778899
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC-
Q 001108 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG- 1037 (1156)
Q Consensus 959 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsg- 1037 (1156)
.|+.-++..... .+..+..++.+.+. .+.. ..++|||||||+.+||+++ +|++||||++
T Consensus 81 ~Dt~g~~~~~~~-----~e~~~~l~~~l~~~------~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~~~ 140 (301)
T 2qnr_A 81 VDTPGYGDAINC-----RDCFKTIISYIDEQ------FERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFGHG 140 (301)
T ss_dssp EEEC----------------CTTHHHHHHHH------HHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred hhhhhhhhhcCc-----HHHHHHHHHHHHHH------HHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence 888877543210 00001111222111 2222 2358999999999988875 9999999984
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q 001108 1038 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 1068 (1156)
Q Consensus 1038 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 1068 (1156)
||+... +.++++... +.++|++.||..
T Consensus 141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 141 LKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 555665443 789999999964
No 170
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.53 E-value=2e-17 Score=176.95 Aligned_cols=145 Identities=14% Similarity=0.121 Sum_probs=111.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCC--CCCCHHHHHHHHHHh
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS--PFVTIYESLLFSAWL 968 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~--~~~Tv~e~l~~~~~l 968 (1156)
.++|+++||+||||||||||+++|+|...+ .++|++|++.+. ..+|+.+++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 478999999999999999999999986431 378999988766 5679988865431
Q ss_pred hCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH----HHHHHHHHHHhcCCCEEEEeCCCCC-------
Q 001108 969 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 1037 (1156)
Q Consensus 969 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq----rqrl~iA~aL~~~p~illLDEPTsg------- 1037 (1156)
..+ .....+.+.++++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~----~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHP----DAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSG----GGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CCh----hhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111 111124466777888776655443 34689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEecCC
Q 001108 1038 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQP 1067 (1156)
Q Consensus 1038 LD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~ 1067 (1156)
||+.....+.+.+++. .++|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 45699999999974
No 171
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.52 E-value=3.6e-14 Score=142.52 Aligned_cols=83 Identities=18% Similarity=0.287 Sum_probs=68.9
Q ss_pred ccccCCCChhHHHHHHHH------HHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 001108 318 DEMIRGISGGQKKRVTTG------EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia------~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1156)
++.+..|||||||||+|| ++|+.+|+++||||||+|||+.+...+.+.|+++.. .+.++ +.++|+. ++.+.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~ti-iivsH~~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQV-ILVSHDE-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEE-EEEESCG-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEE-EEEEChH-HHHHh
Confidence 455678999999999876 899999999999999999999999999999998654 34454 4466666 67899
Q ss_pred cCeEEEE--cCCeE
Q 001108 392 FDDIILL--SDGQI 403 (1156)
Q Consensus 392 ~D~iilL--~~G~i 403 (1156)
+|++++| .+|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 46643
No 172
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.52 E-value=9.7e-16 Score=197.49 Aligned_cols=160 Identities=14% Similarity=0.070 Sum_probs=110.2
Q ss_pred ceEeeceeEEEeC-------CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEE-EEcCCCC
Q 001108 165 LTILKDVSGVIKP-------GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAA-YISQHDN 236 (1156)
Q Consensus 165 ~~iL~~vs~~i~~-------G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~-yv~Q~d~ 236 (1156)
..+++|+++.+++ |++++|+|||||||||||++| |.+.+ ..++| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC
Confidence 3589999999987 999999999999999999999 88753 12344 8999652
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccc
Q 001108 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1156)
.+||.++|.. + +|+.+...
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~--- 846 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIM--- 846 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHh---
Confidence 4566555421 0 01110000
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHH-HHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ-IVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~-i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
.+...+|++++ ++++|++++.+|+++|||||++|+|+..... ++..|+.+.... +..++.++|+...+..++|++
T Consensus 847 --~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~-g~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 847 --SGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETI-KCRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTS-CCEEEEECCCHHHHHHTSSCS
T ss_pred --hchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHHhCCcc
Confidence 01124666665 4999999999999999999999999988544 667888775432 445555788888888899999
Q ss_pred EEEcCCeEE--EEcChhH
Q 001108 396 ILLSDGQIV--YQGPREL 411 (1156)
Q Consensus 396 ilL~~G~iv--~~G~~~~ 411 (1156)
.++ +|++. +.|++++
T Consensus 923 ~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECED 939 (1022)
T ss_dssp SEE-EEEEEEC-------
T ss_pred eee-cCeEEEEEecCccc
Confidence 887 58887 5565543
No 173
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.52 E-value=2.3e-15 Score=189.47 Aligned_cols=148 Identities=14% Similarity=0.045 Sum_probs=98.7
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHH
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 960 (1156)
..+++|++++ ++|++++|+|||||||||||++|+|....+ . .|..+... ...++++.| ++..+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q------~G~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-Y------IGSYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-T------TTCCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-h------cCcccchh--cccceeHHH---HHhhCCHHH
Confidence 4689999999 999999999999999999999999852100 0 11111111 123555554 334445555
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 001108 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040 (1156)
Q Consensus 961 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~ 1040 (1156)
++..+ .+.+|+|+++ +..+..++.+|++|||||||+|+|+
T Consensus 662 ~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 44211 1236777764 4445557899999999999999998
Q ss_pred HHHHHH-HHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1041 RAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1041 ~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
.....+ +.+++.+.+ .|+|||++||+++ +.+.+|++..+.+
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n 744 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN 744 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE
Confidence 766654 788888877 4999999999975 4567776554543
No 174
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.51 E-value=6e-17 Score=170.00 Aligned_cols=158 Identities=20% Similarity=0.235 Sum_probs=105.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-ccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 256 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 256 (1156)
|++++|+||||||||||+++|+|.++ + +| |.++|....+.. .++.++|++|+. ... ++++ ++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~-- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVG-- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hccc--
Confidence 78999999999999999999999987 6 78 999887764432 257799999963 111 1111 0000
Q ss_pred CchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-cccccccccccCCCChhHHHHHH-H
Q 001108 257 GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEMIRGISGGQKKRVT-T 334 (1156)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqrqRvs-i 334 (1156)
+ +.+. ..+..+|.. ...+|||||+++. +
T Consensus 66 ------------------~-------------------------------~~~~~~~~~~v~~~-~~~ls~~er~~~~~l 95 (189)
T 2i3b_A 66 ------------------L-------------------------------EPPPGKRECRVGQY-VVDLTSFEQLALPVL 95 (189)
T ss_dssp ------------------C-------------------------------CCCSSSCCEESSSS-EECHHHHHTTTTTTT
T ss_pred ------------------c-------------------------------cCCccccccccceE-EEcchHHHHHHHHHH
Confidence 0 0000 011244433 3359999999984 4
Q ss_pred HH---HHhcCCccceeec--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEE---EEecChhhHHhhcCeEEEEcCCeEEEE
Q 001108 335 GE---MMVGPALALFMDE--ISTGLDSSTTFQIVNCLRQNIHINSGTAVI---SLLQPAPETYDLFDDIILLSDGQIVYQ 406 (1156)
Q Consensus 335 a~---al~~~p~vllLDE--ptsgLD~~~~~~i~~~L~~~~~~~~~t~ii---~i~q~~~~~~~~~D~iilL~~G~iv~~ 406 (1156)
++ |+..+|+++|||| |+..+|......|.+.++ ...++|+ +++|..+ ..+.|+|..+.+|+|+.-
T Consensus 96 ~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~-----~~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 96 RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS-----TPGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH-----CSSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred hhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh-----CCCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 44 5789999999999 898899876555555553 2344553 3336553 356788888888888764
Q ss_pred c
Q 001108 407 G 407 (1156)
Q Consensus 407 G 407 (1156)
.
T Consensus 169 ~ 169 (189)
T 2i3b_A 169 T 169 (189)
T ss_dssp C
T ss_pred C
Confidence 3
No 175
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.51 E-value=2.2e-16 Score=168.75 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=103.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCC--CCCCHHHHHHHHhh
Q 001108 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHI--GEMTVRETLAFSAR 252 (1156)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 252 (1156)
.++|++++|+||||||||||+++|+|.+.| .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998753 489999987765 56899888765321
Q ss_pred hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH----
Q 001108 253 CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ---- 328 (1156)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq---- 328 (1156)
.. +. .+ ...+...++.+++.+..+.. ...+|+||
T Consensus 61 ~~--~~--------------------~~---------------~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HP--DA--------------------FD---------------LALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPR 98 (211)
T ss_dssp SG--GG--------------------BC---------------HHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSS
T ss_pred Ch--hh--------------------hh---------------HHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCC
Confidence 00 00 00 11233445666666544432 33589986
Q ss_pred HHHHHHHHHHhcCCccceeecCCCC-------CCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 001108 329 KKRVTTGEMMVGPALALFMDEISTG-------LDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (1156)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsg-------LD~~~~~~i~~~L~~~~~~~~~t~ii~i~q 383 (1156)
+||+++|++++.+|.++++||||++ ||+.....+.+.+++.....+.+++.+.|+
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4788999999999999999999999 999999999998876543345555544443
No 176
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.50 E-value=9.7e-16 Score=176.47 Aligned_cols=168 Identities=20% Similarity=0.197 Sum_probs=99.5
Q ss_pred Eeece-eEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCC-CCceeE-EEEcCccCCCcCccceEEEEcCCCCCCCCC
Q 001108 167 ILKDV-SGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPT-LKVSGT-VTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 167 iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~-~~~~G~-V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1156)
.|+++ .+.+++|++++|+||||||||||++.|++.. +|+ +...|+ |.+++.+. + .++.+++++|...+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~-~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F-RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C-CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C-CHHHHHHHHHHcCCCHH-
Confidence 45555 6899999999999999999999999999987 443 011367 78887653 1 12446666665443332
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
++.+|+.+...
T Consensus 195 ~v~~ni~~~~~--------------------------------------------------------------------- 205 (349)
T 1pzn_A 195 EVLKHIYVARA--------------------------------------------------------------------- 205 (349)
T ss_dssp HHGGGEEEEEC---------------------------------------------------------------------
T ss_pred HHhhCEEEEec---------------------------------------------------------------------
Confidence 44444433210
Q ss_pred CCCChhHHHHHHHHHHHh-------cCCccceeecCCCCCCHHH------------HHHHHHHHHHHHHhcCCeEEEEEe
Q 001108 322 RGISGGQKKRVTTGEMMV-------GPALALFMDEISTGLDSST------------TFQIVNCLRQNIHINSGTAVISLL 382 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~-------~~p~vllLDEptsgLD~~~------------~~~i~~~L~~~~~~~~~t~ii~i~ 382 (1156)
--|++|++++.++++++ .+|+++++||||++||+.. ..++++.|+++++..+ ++|+.++
T Consensus 206 -~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~-~tvii~~ 283 (349)
T 1pzn_A 206 -FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVTN 283 (349)
T ss_dssp -CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred -CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcC-cEEEEEc
Confidence 01334444555554444 7899999999999999852 3566677777766444 4455566
Q ss_pred cChhhHHhhcCeEEEEcCCeEEEEcCh
Q 001108 383 QPAPETYDLFDDIILLSDGQIVYQGPR 409 (1156)
Q Consensus 383 q~~~~~~~~~D~iilL~~G~iv~~G~~ 409 (1156)
|........|++...+..|+++.++..
T Consensus 284 h~~~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 284 QVQARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp ECC---------------CCCCCTTCS
T ss_pred ccccccccccCCccccCCcceEeecCc
Confidence 666665556667777778887766543
No 177
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.50 E-value=7.4e-16 Score=173.99 Aligned_cols=156 Identities=12% Similarity=0.152 Sum_probs=80.1
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC-CCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK-LDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~-~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1156)
++.+++++++.| +|+||||||||||++.|+|. ..|. +| |.++|.++......+.++|++|.+.....+|
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 456999999998 99999999999999999997 6666 78 8888876643222356799999888888899
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|.||..|+..... .+. . ...++++.+. .+ ...+
T Consensus 80 v~Dt~g~~~~~~~-------------~e~---~--------------------~~l~~~l~~~------~~-----~~~~ 112 (301)
T 2qnr_A 80 VVDTPGYGDAINC-------------RDC---F--------------------KTIISYIDEQ------FE-----RYLH 112 (301)
T ss_dssp EEEEC---------------------------C--------------------TTHHHHHHHH------HH-----HHHH
T ss_pred hhhhhhhhhhcCc-------------HHH---H--------------------HHHHHHHHHH------HH-----HHHH
Confidence 9999877542110 000 0 0011111111 11 2345
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCC-CCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 385 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsg-LD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~ 385 (1156)
++|||||||+.+||+++ ++++||||++ ||+... +.++++.. ....+++...|+.
T Consensus 113 ~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~-~~~iilV~~K~Dl 167 (301)
T 2qnr_A 113 DESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHN-KVNIVPVIAKADT 167 (301)
T ss_dssp HHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTT-TSCEEEEECCGGG
T ss_pred HhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHh-cCCEEEEEEeCCC
Confidence 69999999999988875 9999999985 999873 44554432 2245555555554
No 178
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.49 E-value=4.3e-15 Score=164.04 Aligned_cols=133 Identities=15% Similarity=0.198 Sum_probs=93.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.+|+|+| +++|++++|+|||||||||||++|+|.++|+ .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 3899999 8999999999999999999999999998762 169999998764311 11111122110
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
.+|++. ..+
T Consensus 79 -----------------------------------------------------------~~gl~~-----------~~l- 87 (261)
T 2eyu_A 79 -----------------------------------------------------------EVGEDT-----------KSF- 87 (261)
T ss_dssp -----------------------------------------------------------EBTTTB-----------SCH-
T ss_pred -----------------------------------------------------------HhCCCH-----------HHH-
Confidence 012210 112
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
|++||++|..+|+++++|||| |+.+...+++ . +. .+.++ ++++|... +...+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~g~~v-l~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-TGHLV-FGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-TTCEE-EEEECCSS-HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-cCCEE-EEEeCcch-HHHHHHHHhhhcC
Confidence 899999999999999999999 9888665443 2 22 34554 44555544 7788999988864
No 179
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.49 E-value=8e-16 Score=177.16 Aligned_cols=160 Identities=19% Similarity=0.158 Sum_probs=97.0
Q ss_pred eeee-eEEEeCCeEEEEEcCCCCcHHHHHhhhcCCC--CC--CeEEEE-EEEcCccCChhcccceEEEeccCCCCCCCCC
Q 001108 884 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TG--GYITGN-ITISGYPKKQETFARISGYCEQNDIHSPFVT 957 (1156)
Q Consensus 884 L~~v-s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~--~~--~~~~G~-i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~T 957 (1156)
|+.+ .+.|++|++++|+||||||||||++.|++.. .+ |...|. |+|++.+.. ..+.+++++|...+.+. +
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-H
Confidence 5555 5889999999999999999999999999854 21 111356 888886531 11234455554433221 2
Q ss_pred HHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-------cCCCEEE
Q 001108 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-------ANPSIIF 1030 (1156)
Q Consensus 958 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~-------~~p~ill 1030 (1156)
+.||+.+. .. .-|.+|+|++.++++++ .+|++|+
T Consensus 196 v~~ni~~~-------------------------------~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVA-------------------------------RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEE-------------------------------EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEE-------------------------------ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 22222110 00 02567788888888887 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1031 MDEPTSGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1031 LDEPTsgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
+||||+++|+.. ...+++.|+++++ .|+|||+++|... .....++...... ||+++
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l 305 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHIL 305 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceE
Confidence 999999999852 3556666777654 5999999999865 3333334444443 34433
No 180
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.49 E-value=4.4e-14 Score=157.89 Aligned_cols=151 Identities=21% Similarity=0.186 Sum_probs=101.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhh
Q 001108 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (1156)
Q Consensus 890 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr 969 (1156)
.+++|++++|+||||||||||++.|++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 488999999999999999999999997432 2333 23433211 2346677655421 01111111 111
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHH---HH
Q 001108 970 LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARA---AA 1044 (1156)
Q Consensus 970 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTs--gLD~~~---~~ 1044 (1156)
. .... ...+++++.+.+.+..+.. +..||+||++++ ++++.+|++|++||||+ ++|... ..
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1121 2345678888877765543 346999998765 68889999999999999 999754 47
Q ss_pred HHHHHHHHHH-hCCCEEEEEecCCc
Q 001108 1045 IVMRTVRNTV-DTGRTVVCTIHQPS 1068 (1156)
Q Consensus 1045 ~i~~~l~~~~-~~g~tvi~~~H~~~ 1068 (1156)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888898886 45999999999864
No 181
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.48 E-value=2.3e-15 Score=164.83 Aligned_cols=168 Identities=12% Similarity=0.072 Sum_probs=93.8
Q ss_pred eece-eEEEeCCeEEEEEcCCCCcHHHHHHHHh--cCCCCCCCceeEEEEcCccCCCcCc--cceEEEEcCCCCCCCCCC
Q 001108 168 LKDV-SGVIKPGRLTLLLGPPSSGKTTLLLALA--GKLDPTLKVSGTVTYNGHDMDEFVP--QRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 168 L~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~--G~~~~~~~~~G~V~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~lT 242 (1156)
|+++ .+-+++|++++|+||||||||||+++|+ |...+. .|.+.+++........ .+.++|++|+....+.++
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA 95 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE
Confidence 4443 2489999999999999999999999999 663444 5667776643211000 122344444322222222
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
+.++........ .. .. .. ...
T Consensus 96 ~~~~~~~~~~~~-------------~~----------------------------~~-------------~~-----~~~ 116 (251)
T 2ehv_A 96 IVDGVSSVVGLP-------------SE----------------------------EK-------------FV-----LED 116 (251)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred EEEccccccccc-------------cc----------------------------cc-------------ee-----ccC
Confidence 222211100000 00 00 00 000
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCC-----HHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH---------
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLD-----SSTTFQIVNCLRQNIHINSGTAVISLLQPAPET--------- 388 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD-----~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~--------- 388 (1156)
..+-++..+...+..-..+|+++++||||++|| ...+..+.+.++.+.. .+.|+| .++|...++
T Consensus 117 ~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii-~vtH~~~~~~~~~~~~~i 194 (251)
T 2ehv_A 117 RFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTI-LTTEAPDPQHGKLSRYGI 194 (251)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEE-EEECCC----CCSSSSSC
T ss_pred cccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEE-EEECCCCCCcccccccCh
Confidence 123344444344444457999999999999997 5666667788877643 455554 467777776
Q ss_pred Hhhc-CeEEEEc
Q 001108 389 YDLF-DDIILLS 399 (1156)
Q Consensus 389 ~~~~-D~iilL~ 399 (1156)
..+| |+|++|+
T Consensus 195 ~~~~aD~vi~l~ 206 (251)
T 2ehv_A 195 EEFIARGVIVLD 206 (251)
T ss_dssp GGGGCSEEEEEE
T ss_pred hhEeeeEEEEEe
Confidence 6788 9999995
No 182
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.47 E-value=9.1e-14 Score=165.06 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=63.3
Q ss_pred CCCChhHHHHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 322 RGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~----~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
..||||||||++||++|+ .+|+++||||||++||+.....+.+.|+++.. .++.++.++|+ ..+...||+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEEE
Confidence 359999999999999998 68999999999999999999999999987532 23445556666 567889999999
Q ss_pred Ec
Q 001108 398 LS 399 (1156)
Q Consensus 398 L~ 399 (1156)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 183
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.47 E-value=5.6e-15 Score=159.70 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=104.7
Q ss_pred EeeeeeE-EEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccc---eEEEeccCCCCCCCCCH
Q 001108 883 LLNGVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR---ISGYCEQNDIHSPFVTI 958 (1156)
Q Consensus 883 ~L~~vs~-~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~---~~gyv~q~~~~~~~~Tv 958 (1156)
.|+++.+ .+++|++++|+||||||||||++.|++... ...|.+.+.+.+.......+ ..|+.+|..... .+.+
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 87 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLII 87 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEE
Confidence 5788885 899999999999999999999999997532 11234444333222111000 011111110000 0000
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCC
Q 001108 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTS 1036 (1156)
Q Consensus 959 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~--illLDEPTs 1036 (1156)
++.....++ .... ....|.++.++...+.....+|+ +|++||||+
T Consensus 88 ------------------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 88 ------------------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp ------------------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred ------------------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 000000000 0000 12359999998888888888999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCc-------HHHHHhcCeEEEEecC
Q 001108 1037 GL--DARAAAIVMRTVRNTVD-TGRTVVCTIHQPS-------IDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1037 gL--D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~-------~~i~~~~d~v~~l~~G 1084 (1156)
++ |+.....+++.|+++++ .|+|||+++|+.. ..+...||++++|.+.
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88 99999999999999864 5999999999972 2367789999999864
No 184
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.47 E-value=3.6e-14 Score=180.13 Aligned_cols=154 Identities=13% Similarity=0.121 Sum_probs=97.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
..|++|||+.+++|++++|+|||||||||||+++++..-.. + .|. +.+... +.++.-+..+..+.+.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-----q---~g~----~vpa~~-~~i~~~d~i~~~ig~~ 726 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-----Q---IGS----YVPAEE-ATIGIVDGIFTRMGAA 726 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-----H---HTC----CBSSSE-EEEECCSEEEEEC---
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-----h---cCc----cccchh-hhhhHHHHHHHhCChH
Confidence 56899999999999999999999999999999998642110 0 010 011110 1111111122222222
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
+++. .....+
T Consensus 727 d~l~----------------------------------------------------------------------~~~stf 736 (918)
T 3thx_B 727 DNIY----------------------------------------------------------------------KGRSTF 736 (918)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred HHHH----------------------------------------------------------------------HhHHHh
Confidence 2111 112358
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE-EcCCe
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL-LSDGQ 402 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~-~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil-L~~G~ 402 (1156)
|+|++|++.|+++ +.+|+++||||||+|||+.....+. ..++.+....+.+ ++.++|+. ++.+++|+.-- +.+++
T Consensus 737 s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~t-vl~vTH~~-el~~l~~~~~~~v~n~~ 813 (918)
T 3thx_B 737 MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSL-TLFVTHYP-PVCELEKNYSHQVGNYH 813 (918)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCE-EEEECSCG-GGGGHHHHTTTTEEEEE
T ss_pred hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCe-EEEEeCcH-HHHHHHhhcccceEEEE
Confidence 9999999999998 8999999999999999999999987 5666665433444 44566664 55566665421 33444
Q ss_pred EE
Q 001108 403 IV 404 (1156)
Q Consensus 403 iv 404 (1156)
+.
T Consensus 814 ~~ 815 (918)
T 3thx_B 814 MG 815 (918)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 185
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.46 E-value=4.9e-15 Score=166.94 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=100.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---------cceEEEEcCCCCCCCCCCHHHHH
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---------QRTAAYISQHDNHIGEMTVRETL 247 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 247 (1156)
+|++++|+||||||||||++.|+|.+.|+ +|+|.++|.++..... ++.++|++|+....|.+||++++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999987 8999999998654321 24589999998888889999999
Q ss_pred HHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChh
Q 001108 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327 (1156)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (1156)
.++.. .+. +. .+++..|+.+..+ +-++..
T Consensus 178 ~~~~~-~~~---------------d~---------------------------~llDt~G~~~~~~--------~~~~eL 206 (304)
T 1rj9_A 178 QAMKA-RGY---------------DL---------------------------LFVDTAGRLHTKH--------NLMEEL 206 (304)
T ss_dssp HHHHH-HTC---------------SE---------------------------EEECCCCCCTTCH--------HHHHHH
T ss_pred HHHHh-CCC---------------CE---------------------------EEecCCCCCCchH--------HHHHHH
Confidence 76531 100 00 0011122222111 114455
Q ss_pred HHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC
Q 001108 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384 (1156)
Q Consensus 328 qrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~ 384 (1156)
+|||++|||+++.+|+.++| .||+.+..++++.++.+....+.|+|+ ++|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~ii-vTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVI-VTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEE-EECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEE-EECC
Confidence 68999999999999994444 455555555666666654434556555 4554
No 186
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.46 E-value=5.8e-15 Score=169.77 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=85.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhh
Q 001108 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (1156)
Q Consensus 890 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr 969 (1156)
.+.+|++++|+|||||||||||++|+|...+. ..|.|...+.+... ......++++|.....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~---------------- 180 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHR---------------- 180 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTT----------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeecc----------------
Confidence 57899999999999999999999999965311 12444333322211 1111122333321110
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 001108 970 LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049 (1156)
Q Consensus 970 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~ 1049 (1156)
..++..+ +||++|..+|++|++|||| |.++...+
T Consensus 181 ------------------------------------~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~--- 214 (356)
T 3jvv_A 181 ------------------------------------DTLGFSE----ALRSALREDPDIILVGEMR---DLETIRLA--- 214 (356)
T ss_dssp ------------------------------------TBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHH---
T ss_pred ------------------------------------ccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHH---
Confidence 0123222 9999999999999999999 76664443
Q ss_pred HHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1050 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1050 l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
.+.+.+|+|||+|+|+.+. .+.+||++.|..|
T Consensus 215 -~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~~ 246 (356)
T 3jvv_A 215 -LTAAETGHLVFGTLHTTSA--AKTIDRVVDVFPA 246 (356)
T ss_dssp -HHHHHTTCEEEEEESCSSH--HHHHHHHHHTSCH
T ss_pred -HHHHhcCCEEEEEEccChH--HHHHHHHhhhcCc
Confidence 3445679999999999874 4789999888543
No 187
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.46 E-value=1.2e-15 Score=187.99 Aligned_cols=165 Identities=18% Similarity=0.161 Sum_probs=110.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC-CCCceeEEEEcCccCCC------cCccceEEEEcCCCCCCCCCCHHHHHHHHhhh
Q 001108 181 TLLLGPPSSGKTTLLLALAGKLDP-TLKVSGTVTYNGHDMDE------FVPQRTAAYISQHDNHIGEMTVRETLAFSARC 253 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~~-~~~~~G~V~~nG~~~~~------~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (1156)
++|+|||||||||||++|+|...| + +|.|+++|.++.. ...++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999877 6 8999999988521 12356799999999999999999999876432
Q ss_pred cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHH
Q 001108 254 QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333 (1156)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvs 333 (1156)
.+.. . .++| ++++.
T Consensus 125 ~~~~---------------------------------------------------~------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGE---------------------------------------------------G------------MGIS---HELIT 138 (608)
T ss_dssp HHCS---------------------------------------------------S------------SCCC---SCCEE
T ss_pred hcCC---------------------------------------------------c------------cccc---hHHHH
Confidence 1100 0 0011 11122
Q ss_pred HHHHHhcCCccceeecC------CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh----h---HHhhc-----CeE
Q 001108 334 TGEMMVGPALALFMDEI------STGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP----E---TYDLF-----DDI 395 (1156)
Q Consensus 334 ia~al~~~p~vllLDEp------tsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~----~---~~~~~-----D~i 395 (1156)
++......|+++|+||| |+|||+....++.+.++.+.....+.+++.++|+.. + +.+.. ..|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 22222357999999999 999999999999999998765455666666776654 2 22222 457
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001108 396 ILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1156)
+|+.++.++..|+.+++.+
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEEECGGGSSSSSTTCCCC
T ss_pred EEecchhhcCcccHHHHHH
Confidence 8889988888887665544
No 188
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.45 E-value=1.5e-14 Score=181.12 Aligned_cols=132 Identities=17% Similarity=0.169 Sum_probs=95.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1156)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. + ..+..++|++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p----a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P----AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S----SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e----hhccceeeHHH---hhccCCH
Confidence 4688999999 99999999999999999999999863 33 45431 1 11245777776 4555666
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
.|++. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 65542 14
Q ss_pred CChhHHHHHHHHHHH--hcCCccceeecC---CCCCCHHHH-HHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 001108 324 ISGGQKKRVTTGEMM--VGPALALFMDEI---STGLDSSTT-FQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1156)
Q Consensus 324 LSGGqrqRvsia~al--~~~p~vllLDEp---tsgLD~~~~-~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~ 392 (1156)
+|+|+++++.+++++ +.+|+++||||| |++||..+. ..+++.|++ .+.++|+ ++|+. +..+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~-~TH~~-~l~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLF-ATHYF-ELTALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEE-ECCCH-HHHTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEE-EeCCH-HHHHhh
Confidence 899999999999999 999999999999 999998875 568887765 3445554 56664 444454
No 189
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.45 E-value=2.7e-16 Score=165.03 Aligned_cols=159 Identities=20% Similarity=0.186 Sum_probs=100.5
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 972 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~ 972 (1156)
|++++|+||||||||||+++|+|... ..| |.++|++..+ ...++.+||++|+. .... +++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc--
Confidence 78999999999999999999999653 246 7777766533 23456789999975 1111 111 01100
Q ss_pred CCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHHH
Q 001108 973 EVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAI 1045 (1156)
Q Consensus 973 ~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl-~iA~---aL~~~p~illLDE--PTsgLD~~~~~~ 1045 (1156)
...+ ..+..++.. ...+|+|||+++ ++++ |+..+|+|||||| ||..+|......
T Consensus 67 ------------------~~~~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 ------------------EPPPGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp ------------------CCCSSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred ------------------cCCccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 0000 011133332 235899999888 4454 5789999999999 899999876655
Q ss_pred HHHHHHHHHhCCCEEEE----EecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1046 VMRTVRNTVDTGRTVVC----TIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1046 i~~~l~~~~~~g~tvi~----~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
+.++++ ...++|+ ++|+.+. .+.|++..+. +|+++...+-
T Consensus 128 l~~~l~----~~~~~ilgti~vsh~~~~---~~vd~i~~~~-~~~i~~~~~~ 171 (189)
T 2i3b_A 128 VRQTLS----TPGTIILGTIPVPKGKPL---ALVEEIRNRK-DVKVFNVTKE 171 (189)
T ss_dssp HHHHHH----CSSCCEEEECCCCCSSCC---TTHHHHHTTC-CSEEEECCSS
T ss_pred HHHHHh----CCCcEEEEEeecCCCCch---HHHHHHeecC-CcEEEEeChH
Confidence 555554 4445553 3398642 2456665554 4677776653
No 190
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.42 E-value=7.8e-15 Score=158.55 Aligned_cols=78 Identities=13% Similarity=0.015 Sum_probs=62.3
Q ss_pred CCChhHHHHHHHHHHHhcCCc--cceeecCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEecCh--------hhHHh
Q 001108 323 GISGGQKKRVTTGEMMVGPAL--ALFMDEISTGL--DSSTTFQIVNCLRQNIHINSGTAVISLLQPA--------PETYD 390 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~--vllLDEptsgL--D~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~--------~~~~~ 390 (1156)
..|.+|.++...+.+...+|+ ++++||||+++ |+.....+++.|+++++.. +.+|+.++|.. +.+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~-~~~vi~~~h~~~~~~~~~~~~~~~ 181 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW-NFTIYATSQYAITTSQAFGFGVEH 181 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT-TEEEEEEEC-----------CHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC-CCeEEEEeccCcccccccccchhe
Confidence 358999988888777778999 99999999888 9999999999999887644 45555567776 56889
Q ss_pred hcCeEEEEcCC
Q 001108 391 LFDDIILLSDG 401 (1156)
Q Consensus 391 ~~D~iilL~~G 401 (1156)
+||+|++|...
T Consensus 182 ~~d~vi~l~~~ 192 (235)
T 2w0m_A 182 VADGIIRFRRM 192 (235)
T ss_dssp HCSEEEEEEEE
T ss_pred eeeEEEEEEEE
Confidence 99999999864
No 191
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.42 E-value=1.1e-14 Score=179.57 Aligned_cols=136 Identities=14% Similarity=0.178 Sum_probs=93.6
Q ss_pred EEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC------hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhC
Q 001108 897 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK------QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~ 970 (1156)
+||+|||||||||||++|+|...+ ..+|.|.++|.++. ...+++.+||++|+..+++.+||+|++.+......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999998642 14899999997631 12456789999999999999999999987543211
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC------CCCCCHHHHH
Q 001108 971 SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP------TSGLDARAAA 1044 (1156)
Q Consensus 971 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEP------TsgLD~~~~~ 1044 (1156)
... .++| ++++.++++...+|+++|+||| |+|||+..+.
T Consensus 127 ~~~--------------------------------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 GEG--------------------------------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp CSS--------------------------------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred CCc--------------------------------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 000 0011 1122222333458999999999 9999999999
Q ss_pred HHHHHHHHHHhC--CCEEEEEecCCc
Q 001108 1045 IVMRTVRNTVDT--GRTVVCTIHQPS 1068 (1156)
Q Consensus 1045 ~i~~~l~~~~~~--g~tvi~~~H~~~ 1068 (1156)
.+.++++++..+ +.++++++|+.+
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccch
Confidence 999999997543 678888999876
No 192
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.41 E-value=6e-15 Score=157.00 Aligned_cols=180 Identities=14% Similarity=0.090 Sum_probs=93.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC---CCeEEEEEEEcCc
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGY 932 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~---~~~~~G~i~i~g~ 932 (1156)
++++|+++.+.. .+|++ +.+.+|..++|+|+||||||||++.|+|... ..+..|.+.+.+.
T Consensus 4 l~~~~~~~~~~~--------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMSA--------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEEE--------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheeec--------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 567888877741 25667 7889999999999999999999999999651 0123344332110
Q ss_pred c-C-ChhcccceEEEeccCCCCCCCCC---HHHHHHHHHHh-hC--------CCCCChHHHHHHHHHHHHHcCCCccc-c
Q 001108 933 P-K-KQETFARISGYCEQNDIHSPFVT---IYESLLFSAWL-RL--------SPEVDSETRKMFIDEVMELVELNPLR-Q 997 (1156)
Q Consensus 933 ~-~-~~~~~~~~~gyv~q~~~~~~~~T---v~e~l~~~~~l-r~--------~~~~~~~~~~~~v~~~l~~l~l~~~~-~ 997 (1156)
- . ....+....|+.... .+... .+..+...... +. +........+..+.+.++..++..+. .
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 144 (210)
T 1pui_A 68 FEVADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 144 (210)
T ss_dssp EEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 0 0 000000001111000 00000 11111111100 00 00000111223344555666654321 2
Q ss_pred cccCCCCCCCCCHHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 001108 998 SLVGLPGVSGLSTEQRKR-LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059 (1156)
Q Consensus 998 ~~~~~~~~~~LSgGqrqr-l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~t 1059 (1156)
.. ...+|+||||| +.++++++.+|.++++|||||++|......+++.|.++..+|.|
T Consensus 145 nK-----~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 145 TK-----ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EC-----GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ec-----ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 22 23589999999 89999999999999999999999999999999999988766644
No 193
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.41 E-value=7e-15 Score=172.23 Aligned_cols=164 Identities=13% Similarity=0.101 Sum_probs=94.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.+.++++++++. ++.+++|++|+| +|+|+||||||||+++|+|........|++.+++.+
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~- 70 (418)
T 2qag_C 11 YVGFANLPNQVY-------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK- 70 (418)
T ss_dssp ----CCCCCCTT-------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------
T ss_pred cEEEEecceeEC-------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-
Confidence 366777776552 235899999998 999999999999999999975411112222222211
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
....+.++|++|++.+.+.+||.|++.|...... ... ...+.+.+ +. .++.+++|
T Consensus 71 --t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~------~~~---~~~i~~~i------~~--------~~~~~l~q 125 (418)
T 2qag_C 71 --TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN------SNC---WQPVIDYI------DS--------KFEDYLNA 125 (418)
T ss_dssp --CCEEEEEECC------CEEEEEEECC--------------------CHHHHHHH------HH--------HHHHHTTT
T ss_pred --ceeeeeEEEEEecCCcccceeeeechhhhhhccc------hhh---HHHHHHHH------HH--------HHHHHHHH
Confidence 1123468999999888888999999877643210 000 11121111 11 25667788
Q ss_pred HHHHHHHHhcCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001108 1015 RLTIAVELVANPS---IIFMDEPT-SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068 (1156)
Q Consensus 1015 rl~iA~aL~~~p~---illLDEPT-sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1068 (1156)
|++|||+++.+|+ +|++|||| .|||+... ++++.+. .+.+||+++|..+
T Consensus 126 r~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 126 ESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp SCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred HHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 9999999999999 99999999 69998774 3344454 3788888888654
No 194
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.40 E-value=5.9e-13 Score=137.16 Aligned_cols=84 Identities=11% Similarity=0.158 Sum_probs=69.5
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1006 SGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
..||||||||++||++|+. +|++++|||||+|||+.+...+++.|+++.+ +.++|+++|+. .+.+.+|+++.+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~v 139 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIGV 139 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEEE
Confidence 5699999999999999974 4699999999999999999999999999864 57899999985 467899999865
Q ss_pred e--cCcEEEEecC
Q 001108 1082 K--RGGQEIYVGP 1092 (1156)
Q Consensus 1082 ~--~Gg~~~~~g~ 1092 (1156)
. +|...++...
T Consensus 140 ~~~~g~s~~~~~~ 152 (173)
T 3kta_B 140 SMRDGVSKVVSLS 152 (173)
T ss_dssp EEETTEEEEEECC
T ss_pred EecCCEEEEEEEE
Confidence 4 4433444433
No 195
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.39 E-value=5.6e-14 Score=176.96 Aligned_cols=156 Identities=13% Similarity=0.055 Sum_probs=100.5
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
..+++|+++. ++|++++|+|||||||||||++|+|..... + .|..+.. ....++++.| ++..+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-----q---~G~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-----Y---IGSYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-----T---TTCCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-----h---cCcccch--hcccceeHHH---HHhhCCHH
Confidence 4589999999 999999999999999999999999974221 0 1211111 1134566655 45556666
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
+++..+. ..+
T Consensus 661 d~l~~~~----------------------------------------------------------------------stf 670 (800)
T 1wb9_A 661 DDLASGR----------------------------------------------------------------------STF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhhh----------------------------------------------------------------------hhh
Confidence 6553211 135
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i-~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|+|+++ ++.+...+.+|+++|||||++|+|+.....+ +..++.+....+.++ +.++|+. +...++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~v-l~~TH~~-el~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALT-LFATHYF-ELTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEE-EEECSCG-GGGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeE-EEEeCCH-HHHHHhhhhhceEEEEE
Confidence 666654 4444456899999999999999998777765 566776654234444 4456665 45578998877778877
Q ss_pred EEEc
Q 001108 404 VYQG 407 (1156)
Q Consensus 404 v~~G 407 (1156)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 196
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.38 E-value=4e-13 Score=163.15 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=70.3
Q ss_pred CCC-CHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1006 SGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1006 ~~L-SgGqrqrl~iA~aL~~~p--~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||++||++. +...||++++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 357 999999999999999999 99999999999999999999999999987 899999999975 556799999997
Q ss_pred cC
Q 001108 1083 RG 1084 (1156)
Q Consensus 1083 ~G 1084 (1156)
++
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 197
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.37 E-value=4.4e-13 Score=149.77 Aligned_cols=153 Identities=12% Similarity=0.120 Sum_probs=98.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhh
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARC 253 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (1156)
-+++|++++|+||||||||||++.|++.+. .|.+ +.|.+.. ....+.|+..++. . +.+. .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~------~-~~~~--~r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDP------P-TAIH--HRL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSC------H-HHHH--HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCC------H-HHHH--HHH
Confidence 489999999999999999999999998654 4555 3344321 1346788877542 1 1111 000
Q ss_pred cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHH
Q 001108 254 QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333 (1156)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvs 333 (1156)
. ... ..+ .....+.+++.+++.+..+. .+..||+||++++
T Consensus 88 ~-------------~~g--~~~-------------------~~~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i- 127 (279)
T 1nlf_A 88 H-------------ALG--AHL-------------------SAEERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL- 127 (279)
T ss_dssp H-------------HHH--TTS-------------------CHHHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH-
T ss_pred H-------------HHH--hhc-------------------ChhhhhhccCceEEeecCCC-----CcccCCHHHHHHH-
Confidence 0 000 000 00123445677777665443 3456999998876
Q ss_pred HHHHHhcCCccceeecCCC--CCCHHHH---HHHHHHHHHHHHhcCCeEEEEEecChhh
Q 001108 334 TGEMMVGPALALFMDEIST--GLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1156)
Q Consensus 334 ia~al~~~p~vllLDEpts--gLD~~~~---~~i~~~L~~~~~~~~~t~ii~i~q~~~~ 387 (1156)
++++.+|+++++||||+ ++|.... .++++.|+++++..+.|+ +.++|....
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv-i~i~H~~~~ 183 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI-VFLHHASKG 183 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE-EEEEEC---
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE-EEEecCCCc
Confidence 57888999999999999 9997544 788888988876555554 446666544
No 198
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.33 E-value=2.5e-14 Score=153.66 Aligned_cols=131 Identities=16% Similarity=0.159 Sum_probs=84.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHh
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~l 968 (1156)
-..++|++++|+||||||||||+++|+|...+....|.|.+.+.+.... .++.++|++|++..++.+++..
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~-------- 81 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRD-------- 81 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTT--------
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcC--------
Confidence 4578999999999999999999999999764213678999988765432 2345789988643322222100
Q ss_pred hCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 001108 969 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048 (1156)
Q Consensus 969 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~ 1048 (1156)
+.++.+.. .+ .+.|-.+++ +.+++..++++||| ||+.++..+++
T Consensus 82 ----------------~f~E~~~~-------~~-----~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~ 125 (219)
T 1s96_A 82 ----------------AFLEHAEV-------FG-----NYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQ 125 (219)
T ss_dssp ----------------CEEEEEEE-------TT-----EEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHH
T ss_pred ----------------HHHHHHHH-------Hh-----ccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHH
Confidence 00000000 00 011111222 34566678999999 99999999998
Q ss_pred HHHHHHhCCCEEEEEecCCc
Q 001108 1049 TVRNTVDTGRTVVCTIHQPS 1068 (1156)
Q Consensus 1049 ~l~~~~~~g~tvi~~~H~~~ 1068 (1156)
.+. +|.||++++|+++
T Consensus 126 ~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 126 KMP----HARSIFILPPSKI 141 (219)
T ss_dssp HCT----TCEEEEEECSSHH
T ss_pred Hcc----CCEEEEEECCCHH
Confidence 876 5899999999875
No 199
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.33 E-value=1.1e-13 Score=161.29 Aligned_cols=171 Identities=17% Similarity=0.129 Sum_probs=110.2
Q ss_pred eeeeeEEEeCCeE--EEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHH
Q 001108 884 LNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (1156)
Q Consensus 884 L~~vs~~i~~Ge~--~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~ 961 (1156)
|++||+++++|++ +||+||||||||||+++|+|..- .|.. +.... ....++.++|++|++.+++.+||.|+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~-~~~~~--~~~~~~~i~~v~Q~~~l~~~ltv~D~ 102 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEP-ATHTQ--PGVQLQSNTYDLQESNVRLKLTIVST 102 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CC--SSCEEEEEEEEEEC--CEEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCc-CCCCC--ccceEeeEEEEeecCccccccchhhh
Confidence 9999999999999 99999999999999999999742 1211 11111 11224578999999988888999998
Q ss_pred HHHHHHhhCCCCCCh----HHHHHHHHHHHHHc-CCC----cccccc----cC--CCCCCCCCHHHHHHHHHHHHHhcCC
Q 001108 962 LLFSAWLRLSPEVDS----ETRKMFIDEVMELV-ELN----PLRQSL----VG--LPGVSGLSTEQRKRLTIAVELVANP 1026 (1156)
Q Consensus 962 l~~~~~lr~~~~~~~----~~~~~~v~~~l~~l-~l~----~~~~~~----~~--~~~~~~LSgGqrqrl~iA~aL~~~p 1026 (1156)
+.|+.... ..... +..+...++.++.. ++. ...+.. +. .|...+|+-.+ +.|+++|..++
T Consensus 103 ~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~ 177 (427)
T 2qag_B 103 VGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKV 177 (427)
T ss_dssp ECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCS
T ss_pred hhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCC
Confidence 87653210 00000 01223344455544 332 112221 11 12223567666 78999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 001108 1027 SIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1066 (1156)
Q Consensus 1027 ~illLDEPTsgLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~ 1066 (1156)
+||++||||..|.+.....+.+.|++ +...|.+|+.++.+
T Consensus 178 ~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 178 NIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 99999999999999999999999986 77789999988764
No 200
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.32 E-value=4.8e-12 Score=135.49 Aligned_cols=153 Identities=18% Similarity=0.145 Sum_probs=98.1
Q ss_pred Eeeeee-EEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHH
Q 001108 883 LLNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (1156)
Q Consensus 883 ~L~~vs-~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~ 961 (1156)
.|+++. +.+++|++++|+||||||||||++.|++ ..+ .+.++++... . .+. +.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~~-----------------~----~~~-~~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTEG-----------------G----FSP-ER 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESSC-----------------C----CCH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECCC-----------------C----CCH-HH
Confidence 466666 4799999999999999999999999998 221 2233443321 1 111 11
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH--HHHHHHHHHHHhcC-CCEEEEeCCCCCC
Q 001108 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGL 1038 (1156)
Q Consensus 962 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG--qrqrl~iA~aL~~~-p~illLDEPTsgL 1038 (1156)
+.- .... ...+. +++++.+.+ ...|++ +++++..+++++.+ |++|++||||+.+
T Consensus 62 ~~~--~~~~-~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQ--MAET-RGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHH--HHHT-TTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHH--HHHh-cCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 110 0010 01111 122222211 123444 46788899999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhC-CCEEEEEecCCcH------------HHHHhcCeEEEEecC
Q 001108 1039 DARA--------AAIVMRTVRNTVDT-GRTVVCTIHQPSI------------DIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1039 D~~~--------~~~i~~~l~~~~~~-g~tvi~~~H~~~~------------~i~~~~d~v~~l~~G 1084 (1156)
|+.. ...+++.|++++++ |+|||+++|.... .+...+|.+++|.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9733 24566667777654 8999999997641 356789999999864
No 201
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.31 E-value=1.1e-11 Score=127.69 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=69.4
Q ss_pred cCCCChhHHHHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 321 IRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~----~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
+..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.. +++ +|.++|+ ..+.+.+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~-~ivith~-~~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQ-FIVITLR-DVMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSC-HHHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCE-EEEEEec-HHHHHhCCEEE
Confidence 4579999999999999996 56799999999999999999999999988642 344 4445555 46789999998
Q ss_pred EE--cCCeE-EEEcChhHHHH
Q 001108 397 LL--SDGQI-VYQGPRELVLE 414 (1156)
Q Consensus 397 lL--~~G~i-v~~G~~~~~~~ 414 (1156)
.+ .+|.. +.....++..+
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEEETTEEEEEECCHHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHHH
Confidence 66 46754 44455554443
No 202
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.30 E-value=1.1e-13 Score=148.74 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=96.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCH----HHHHH
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV----RETLA 248 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~ 248 (1156)
-..++|++++|+||||||||||+++|+|.++|+ ..+|.|.+++.+.... .++.++|++|++..|+.+|+ .|++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 467899999999999999999999999998863 3589999998765432 23568899996433332222 11111
Q ss_pred HHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 001108 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1156)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1156)
+ .|+. .+.|
T Consensus 89 ~------------------------------------------------------------------~~~~--yg~~--- 97 (219)
T 1s96_A 89 V------------------------------------------------------------------FGNY--YGTS--- 97 (219)
T ss_dssp E------------------------------------------------------------------TTEE--EEEE---
T ss_pred H------------------------------------------------------------------Hhcc--CCCC---
Confidence 0 0110 0111
Q ss_pred HHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcC
Q 001108 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1156)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~ 408 (1156)
+++ .+.++..++++||| ||+.++.++.+.+. .+.+|+.++|+..++.+ ++ +..| .++
T Consensus 98 ~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~ 154 (219)
T 1s96_A 98 REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDS 154 (219)
T ss_dssp HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSC
T ss_pred HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCC
Confidence 222 34445567999999 99999999988775 24556657777666655 43 7777 678
Q ss_pred hhHHHHHHH
Q 001108 409 RELVLEFFA 417 (1156)
Q Consensus 409 ~~~~~~~f~ 417 (1156)
.+++...+.
T Consensus 155 ~e~i~~rl~ 163 (219)
T 1s96_A 155 EEVIAKRMA 163 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888766543
No 203
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.30 E-value=2.7e-13 Score=158.74 Aligned_cols=149 Identities=11% Similarity=0.067 Sum_probs=85.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ ....+.++|+.|++..++.+||.
T Consensus 24 ~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv~ 93 (418)
T 2qag_C 24 KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTIV 93 (418)
T ss_dssp TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC------CEEEEEE
T ss_pred EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecCCcccceeee
Confidence 45899999998 99999999999999999999865311 2222222111 11124689999988888899999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
+|+.|+...... .. .....+++ + ..+
T Consensus 94 Dt~g~~~~~~~~-~~-----------------------------------~~~i~~~i-~-----------------~~~ 119 (418)
T 2qag_C 94 DTPGFGDAVDNS-NC-----------------------------------WQPVIDYI-D-----------------SKF 119 (418)
T ss_dssp ECC-----------------------------------------------CHHHHHHH-H-----------------HHH
T ss_pred echhhhhhccch-hh-----------------------------------HHHHHHHH-H-----------------HHH
Confidence 998876421100 00 00011111 0 135
Q ss_pred ChhHHHHHHHHHHHhcCCc---cceeecCC-CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 001108 325 SGGQKKRVTTGEMMVGPAL---ALFMDEIS-TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~---vllLDEpt-sgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q 383 (1156)
+.++++|+.||++++.+|+ +|++|||| .|||+... .+++ .+. .+.++|+++++
T Consensus 120 ~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~lk---~L~--~~v~iIlVinK 176 (418)
T 2qag_C 120 EDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFMK---RLH--EKVNIIPLIAK 176 (418)
T ss_dssp HHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHHH---HHT--TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHHH---HHh--ccCcEEEEEEc
Confidence 6677889999999999999 99999999 69998873 3333 332 24555555544
No 204
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.30 E-value=1.1e-14 Score=152.87 Aligned_cols=154 Identities=15% Similarity=0.032 Sum_probs=94.3
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh-cccceEEEeccCCCCCCCCCHHHHHHHHHHh
Q 001108 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWL 968 (1156)
Q Consensus 890 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~l 968 (1156)
.+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ...+.++|++|+.. +..|+.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 378999999999999999999999999732 57889998653221 11234577777543 356888888765432
Q ss_pred hCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 001108 969 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048 (1156)
Q Consensus 969 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~ 1048 (1156)
....... ..++.+++..++..+... +.+ +..+|+|++|+++++|++.++|+++ +|+.....+++
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~--~~~-~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTAL--ARP-LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTT--CSC-EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhc--CCC-eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1100000 000001111111111100 111 2359999999999999999999876 68888888877
Q ss_pred HHHHHHhCCCEEEEEec
Q 001108 1049 TVRNTVDTGRTVVCTIH 1065 (1156)
Q Consensus 1049 ~l~~~~~~g~tvi~~~H 1065 (1156)
.++.+...+..+|.++|
T Consensus 143 ~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HTTCCGGGGGGEEECTT
T ss_pred HHhccCcccccEEECCC
Confidence 77665433334444443
No 205
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.29 E-value=4.3e-16 Score=163.54 Aligned_cols=169 Identities=15% Similarity=0.190 Sum_probs=108.1
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE 973 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~ 973 (1156)
|++++|+||||||||||+++|++. ..|.+.++|.+.... ...|+++|.....+..++++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999862 246788887543211 234667776544445678888776543221000
Q ss_pred CChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC--CHHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHH
Q 001108 974 VDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARAAAI 1045 (1156)
Q Consensus 974 ~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L--SgGqrqrl~iA~------aL~~~p~illLDEPTsgLD~~~~~~ 1045 (1156)
. ..+++.+......+. ...+ |+|++|++.++. +|+.+|+...+|+ +||+.....
T Consensus 74 ~---------~~ild~~~~~~~~~~------~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 N---------DVVLDYIAFPDEAEA------LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp C---------EEEEESCCCHHHHHH------HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred C---------cEEEeeccCHHHHHH------HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0 000110000000000 0124 788888888888 8999999888884 899988888
Q ss_pred HHHHHHHHHhCCCEEEEEecC-CcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1046 VMRTVRNTVDTGRTVVCTIHQ-PSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1046 i~~~l~~~~~~g~tvi~~~H~-~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
++.++.+...+.+||.++|. ++ ++.+.||+++ +.|+++..|+.
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~ 179 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAG 179 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC---
T ss_pred -HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecC
Confidence 88888876668899999998 76 5788899998 56788888764
No 206
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.29 E-value=3.4e-13 Score=155.06 Aligned_cols=128 Identities=19% Similarity=0.237 Sum_probs=83.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhh
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARC 253 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (1156)
...+|++++|+|||||||||||++|+|.++++ ..|.|...+.++ ++..+...+++.|....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~-e~~~~~~~~~v~q~~~~---------------- 179 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPI-EFVHESKKCLVNQREVH---------------- 179 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSC-CSCCCCSSSEEEEEEBT----------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcH-Hhhhhccccceeeeeec----------------
Confidence 67899999999999999999999999998864 135665444332 22222223344442110
Q ss_pred cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHH
Q 001108 254 QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333 (1156)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvs 333 (1156)
. ..++-.+ +
T Consensus 180 ----------------------------------------------------------------~---~~~~~~~----~ 188 (356)
T 3jvv_A 180 ----------------------------------------------------------------R---DTLGFSE----A 188 (356)
T ss_dssp ----------------------------------------------------------------T---TBSCHHH----H
T ss_pred ----------------------------------------------------------------c---ccCCHHH----H
Confidence 0 0122221 8
Q ss_pred HHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 334 ia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
||++|..+|+++++|||| |..+...+.+. +. .+.+ |++++|....+ +.+||++.|..|
T Consensus 189 La~aL~~~PdvillDEp~---d~e~~~~~~~~----~~-~G~~-vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 189 LRSALREDPDIILVGEMR---DLETIRLALTA----AE-TGHL-VFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHTTSCCSEEEESCCC---SHHHHHHHHHH----HH-TTCE-EEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHhhhCcCEEecCCCC---CHHHHHHHHHH----Hh-cCCE-EEEEEccChHH-HHHHHHhhhcCc
Confidence 999999999999999999 66664444433 32 4555 55556665555 889999998665
No 207
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.29 E-value=4e-13 Score=155.89 Aligned_cols=129 Identities=19% Similarity=0.284 Sum_probs=93.1
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeE-EEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~ 961 (1156)
+|++++ +++|++++|+||||||||||+++|+|... +. .|.|.+.+.+... ..++.++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~-~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEY-VFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCS-CCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhh-hhccCceEEEeee-----------
Confidence 567766 78999999999999999999999999654 23 5888776655432 2334567777731
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001108 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1156)
Q Consensus 962 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1041 (1156)
+++. ...+ +.+|+.+|..+|++|++|||| |++
T Consensus 191 ----------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 1111 0124 469999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1042 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1042 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
+.. .+++. +..|.+|++|+|..+ +.+.+||++.|
T Consensus 223 ~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l 256 (372)
T 2ewv_A 223 TVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDI 256 (372)
T ss_dssp HHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHT
T ss_pred HHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHh
Confidence 643 34443 356999999999965 56677776544
No 208
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.28 E-value=2e-15 Score=175.54 Aligned_cols=170 Identities=15% Similarity=0.030 Sum_probs=97.3
Q ss_pred EeeceeEEEeC--CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCce----eEEEEcCccCCCcCccceEEEEcCCCCCCCC
Q 001108 167 ILKDVSGVIKP--GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS----GTVTYNGHDMDEFVPQRTAAYISQHDNHIGE 240 (1156)
Q Consensus 167 iL~~vs~~i~~--G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~----G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1156)
+.+.|++.+++ |+.++|+||||||||||+++|+|.++|+ + |+|.+++..- ..+..+..
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~-------------~~~~~~~~ 220 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLG-------------GDEQAMQY 220 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSS-------------SCTTSSCT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcC-------------CCcccCCh
Confidence 45689999999 9999999999999999999999999987 7 7766542100 00001111
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1156)
... +++.+...- . .........++ .++.....++ .
T Consensus 221 ~~~-~~I~~~~q~------~----~~~~~t~~~nl-----------------------------~~~~~~~~~~-----~ 255 (365)
T 1lw7_A 221 SDY-PQMALGHQR------Y----IDYAVRHSHKI-----------------------------AFIDTDFITT-----Q 255 (365)
T ss_dssp TTH-HHHHHHHHH------H----HHHHHHHCSSE-----------------------------EEESSCHHHH-----H
T ss_pred hHH-HHHHHHHHH------H----HHHHHhccCCE-----------------------------EEEeCCchHH-----H
Confidence 122 334332100 0 00000000000 0000000011 1
Q ss_pred cCCCChhHHHHHHHHHHHh-cCCccceeec---CC------CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 001108 321 IRGISGGQKKRVTTGEMMV-GPALALFMDE---IS------TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~-~~p~vllLDE---pt------sgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1156)
...+|+|+++|..+++++. .+|+++|||| |+ .++|...+..+.+.|+++.+..+.++++ +.++ .+..+
T Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ili-lde~-~~~~r 333 (365)
T 1lw7_A 256 AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIE-IESP-SYLDR 333 (365)
T ss_dssp HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEE-EECS-SHHHH
T ss_pred HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEE-eCCC-CHHHH
Confidence 1236677788888887775 5899999999 65 5899999999999998765533445554 4555 35556
Q ss_pred hcCeEEEEc
Q 001108 391 LFDDIILLS 399 (1156)
Q Consensus 391 ~~D~iilL~ 399 (1156)
++|.+.+++
T Consensus 334 ~~~~i~~i~ 342 (365)
T 1lw7_A 334 YNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
No 209
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.28 E-value=7.6e-14 Score=148.47 Aligned_cols=67 Identities=10% Similarity=-0.010 Sum_probs=52.8
Q ss_pred HHHHHcCCcccccccccccccCCCChhHHHH-HHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHH
Q 001108 301 YYLKVLGLDVCADTMVGDEMIRGISGGQKKR-VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371 (1156)
Q Consensus 301 ~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqR-vsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~ 371 (1156)
..++..+++.. .++++ ...+|+||||| +..+++++.+|.++++|||||++|.....++++.|.+...
T Consensus 131 ~~~~~~~~~~~---~v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 131 EWAVDSNIAVL---VLLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHTTCCEE---EEEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHcCCCeE---EEEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 34555666532 22332 33599999999 8899999999999999999999999999999999987653
No 210
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.27 E-value=7.1e-15 Score=154.26 Aligned_cols=169 Identities=11% Similarity=0.053 Sum_probs=106.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 257 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 257 (1156)
|++++|+||||||||||+++|++ +. +|.+.++|.++... ...++++|.....+.+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 68999999999999999999997 33 68999998765332 234677776544455678888776532110
Q ss_pred chhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc---cccCCC--ChhHHHHH
Q 001108 258 TRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD---EMIRGI--SGGQKKRV 332 (1156)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~---~~~~~L--SGGqrqRv 332 (1156)
. . +-....+...+. +..+.+ |+|+++++
T Consensus 71 ----------~-~------------------------------------~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 71 ----------L-A------------------------------------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp ----------H-T------------------------------------TCEEEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred ----------h-c------------------------------------CCcEEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 0 0 000000100000 001224 88998888
Q ss_pred HHHH------HHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC-hhhHHhhcCeEEEEcCCeEEE
Q 001108 333 TTGE------MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP-APETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 333 sia~------al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~-~~~~~~~~D~iilL~~G~iv~ 405 (1156)
.++. +++.+++...+|+ +||+..... ++.++.+.. .+.++ +..+|. ..++.+.+|+|+ .+|+++.
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~i-i~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERYF-YNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTSE-EECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccEE-EeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 8877 8899999888884 899988777 777776532 33444 445555 678999999999 9999999
Q ss_pred EcChhHH
Q 001108 406 QGPRELV 412 (1156)
Q Consensus 406 ~G~~~~~ 412 (1156)
.|+++-+
T Consensus 176 ~~~~~~~ 182 (189)
T 2bdt_A 176 CMAGDPL 182 (189)
T ss_dssp C------
T ss_pred eecCCch
Confidence 9988654
No 211
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.25 E-value=1.9e-12 Score=149.75 Aligned_cols=136 Identities=13% Similarity=0.101 Sum_probs=93.9
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-ccceEEEEc-CCCCC--CCCCC
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYIS-QHDNH--IGEMT 242 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 242 (1156)
+++++|+.+++|++++|+||||||||||+++|+|.++|+ +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 459999999999999999999999999999999999997 999999985311111 346788998 65432 23444
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
++++
T Consensus 241 ~~~~---------------------------------------------------------------------------- 244 (361)
T 2gza_A 241 AATL---------------------------------------------------------------------------- 244 (361)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 4444
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
|+.++..+|+.+++||+.. ..+.+.|+.+. ....+.+.++|.. .....+||++.|..|.
T Consensus 245 -----------i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~-~g~~~~l~t~H~~--~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 245 -----------LRSCLRMKPTRILLAELRG-------GEAYDFINVAA-SGHGGSITSCHAG--SCELTFERLALMVLQN 303 (361)
T ss_dssp -----------HHHHTTSCCSEEEESCCCS-------THHHHHHHHHH-TTCCSCEEEEECS--SHHHHHHHHHHHHTTS
T ss_pred -----------HHHHHhcCCCEEEEcCchH-------HHHHHHHHHHh-cCCCeEEEEECCC--CHHHHHHHHHHHHhcc
Confidence 4444555778999999985 23444555432 2344556655543 4778899999988764
No 212
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.25 E-value=1.9e-13 Score=139.02 Aligned_cols=78 Identities=18% Similarity=0.077 Sum_probs=66.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
..+++++|+.+++|++++|+||||||||||+++|+|.+ |. +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 34899999999999999999999999999999999999 77 899999998764211111 2899987777 89999
Q ss_pred HHHHH
Q 001108 245 ETLAF 249 (1156)
Q Consensus 245 E~l~f 249 (1156)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
No 213
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.25 E-value=1.2e-12 Score=151.45 Aligned_cols=137 Identities=18% Similarity=0.146 Sum_probs=99.4
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-hcccceEEEec-cCCCCCCCCCHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCE-QNDIHSPFVTIYE 960 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~-q~~~~~~~~Tv~e 960 (1156)
+++++|+.+++|++++|+||||||||||+++|+|... +..|.|.++|...-. ...++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~--~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP--FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC--TTSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC--CCceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 4599999999999999999999999999999999876 347999999853211 12456688887 54321
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 001108 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040 (1156)
Q Consensus 961 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~ 1040 (1156)
+++++..++-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 011222356667777778999999999986
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1041 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1041 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
..+.+.|+.+.....|++.++|..+ ....+||+..+..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2355667666544458899999975 56789999988875
No 214
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.24 E-value=6.6e-13 Score=139.19 Aligned_cols=141 Identities=18% Similarity=0.149 Sum_probs=88.5
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-ccceEEEEcCCCCCCCCCCHHHHHHHHhh
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRETLAFSAR 252 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~ 252 (1156)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... .++.++|++|+.. +.+||.+++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999998 44 799999997653221 1234677877543 45788888876542
Q ss_pred hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHH
Q 001108 253 CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332 (1156)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRv 332 (1156)
.. ....... + ++.++..+++..... . +..+..+|+|++||+
T Consensus 78 ~~------------~~~~~~~-~-----------------------~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 RY------------AKEGYFV-I-----------------------LDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAE 118 (191)
T ss_dssp HH------------HHTSCEE-E-----------------------ECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHH
T ss_pred HH------------hccCCeE-E-----------------------EeccCcHHHHHHHHh--c-CCCeEEEEecCCHHH
Confidence 11 0000000 0 000000011111110 0 111235999999999
Q ss_pred HHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 001108 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368 (1156)
Q Consensus 333 sia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~ 368 (1156)
.++|++.++|+++ +|+.....+.+.++.
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 9999999999876 588776666665543
No 215
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.23 E-value=7.8e-14 Score=143.70 Aligned_cols=112 Identities=19% Similarity=0.116 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------cc-ceEE----EEcCCCCCCCCCCHHHHH
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQ-RTAA----YISQHDNHIGEMTVRETL 247 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~-~~~~----yv~Q~d~~~~~lTV~E~l 247 (1156)
++++|+|+||||||||+++|+|.+++.....|.|.++|+++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999999875444799999998854432 12 2455 788865544 100
Q ss_pred HHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChh
Q 001108 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327 (1156)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (1156)
+.. +. .. ..+.+++. .|+ .+||.|++ +||||
T Consensus 77 ---------~~~-----~~-----~a------------------------~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 ---------VSE-----EE-----GN------------------------DLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp ---------CCH-----HH-----HT------------------------CHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred ---------CCh-----hh-----hh------------------------CHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 000 00 00 01223333 134 57999997 59999
Q ss_pred HHHHHHHHHHHhcCCccc
Q 001108 328 QKKRVTTGEMMVGPALAL 345 (1156)
Q Consensus 328 qrqRvsia~al~~~p~vl 345 (1156)
||||++|||+++++|++.
T Consensus 108 q~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp CCCEEEECSSGGGGGGGC
T ss_pred CCcEEEEEecccCCCccC
Confidence 999999999999999874
No 216
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.22 E-value=1.2e-11 Score=132.27 Aligned_cols=77 Identities=12% Similarity=0.012 Sum_probs=57.0
Q ss_pred CChhH--HHHHHHHHHHhcC-CccceeecCCCCCCHHH--------HHHHHHHHHHHHHhcCCeEEEEEecChh------
Q 001108 324 ISGGQ--KKRVTTGEMMVGP-ALALFMDEISTGLDSST--------TFQIVNCLRQNIHINSGTAVISLLQPAP------ 386 (1156)
Q Consensus 324 LSGGq--rqRvsia~al~~~-p~vllLDEptsgLD~~~--------~~~i~~~L~~~~~~~~~t~ii~i~q~~~------ 386 (1156)
.|+++ ++++..+++++.. |+++++||||+++|... ...+++.|+++++..+.++|+ ++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~-~~h~~~~~~~~~ 163 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIV-INQVHFDSRTEM 163 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEE-EECSSSSCTTSS
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EeeEEEcCCCCc
Confidence 45554 5678888899985 99999999999999743 245666788877655666555 555543
Q ss_pred -------hHHhhcCeEEEEcCC
Q 001108 387 -------ETYDLFDDIILLSDG 401 (1156)
Q Consensus 387 -------~~~~~~D~iilL~~G 401 (1156)
.+...+|.|++|...
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 567899999999754
No 217
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.21 E-value=2.8e-11 Score=140.70 Aligned_cols=77 Identities=25% Similarity=0.336 Sum_probs=67.8
Q ss_pred CCCCHHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 001108 1006 SGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 1006 ~~LSgGqrqrl------~iA~aL~~~-p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||+|||++. +...+|++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEE
Confidence 57999999988 567889999 99999999999999999999999999874 4579999999975 56789999
Q ss_pred EEEecCc
Q 001108 1079 FLMKRGG 1085 (1156)
Q Consensus 1079 ~~l~~Gg 1085 (1156)
++|.+.|
T Consensus 356 ~~l~k~~ 362 (371)
T 3auy_A 356 INVKKDG 362 (371)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 9998544
No 218
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.21 E-value=1.8e-13 Score=150.03 Aligned_cols=157 Identities=18% Similarity=0.160 Sum_probs=96.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---cCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhh-
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALA---GKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSAR- 252 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~- 252 (1156)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+... ...+.+.++.|+..+++..|+.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 998876 8999888754321 112335566777778888899999987542
Q ss_pred -------hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 253 -------CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 253 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
+.+.....+ +....... ..++.-+ +. +. -.+..+ . .+.++.+..||
T Consensus 102 ~~~~~~il~g~~~~~~---~~~~l~~~--~~~~~vi--~L--------~~--~~~~~l-----~-----r~~~r~~~~lS 154 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLG---QAEALDKI--CEVDLVI--SL--------NI--PFETLK-----D-----RLSRRWIHPPS 154 (246)
T ss_dssp CTTSCEEEESCCCSHH---HHHHHHTT--CCCCEEE--EE--------EC--CHHHHH-----H-----HHHTEEEETTT
T ss_pred cCCCeEEEECCCCCHH---HHHHHHhh--cCCCEEE--EE--------EC--CHHHHH-----H-----HHHcCCCcCCC
Confidence 111111100 00000000 0000000 00 00 000000 0 11123344699
Q ss_pred hhHHHHHHHHHHH-hcCCccceee----cCCCCCCHHHHHHHHHHHHHHHH
Q 001108 326 GGQKKRVTTGEMM-VGPALALFMD----EISTGLDSSTTFQIVNCLRQNIH 371 (1156)
Q Consensus 326 GGqrqRvsia~al-~~~p~vllLD----EptsgLD~~~~~~i~~~L~~~~~ 371 (1156)
| |+ +++ +.+|++++|| |||++||..+...+.+.|+.+..
T Consensus 155 g----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 155 G----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp T----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred C----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 8 55 677 9999999999 99999999999999998887643
No 219
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.21 E-value=3.5e-14 Score=164.93 Aligned_cols=166 Identities=8% Similarity=0.013 Sum_probs=95.6
Q ss_pred eeeeeEEEeC--CeEEEEEcCCCCcHHHHHhhhcCCCCCCeEE----EEEEEcCccCChhcccceEEEeccCCCCCCCCC
Q 001108 884 LNGVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIT----GNITISGYPKKQETFARISGYCEQNDIHSPFVT 957 (1156)
Q Consensus 884 L~~vs~~i~~--Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~----G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~T 957 (1156)
.+.|++.|++ |++++|+||||||||||+++|+|... +.. |.+.+++... ..+.......
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~-------------~~~~~~~~~~ 222 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLG-------------GDEQAMQYSD 222 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSS-------------SCTTSSCTTT
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcC-------------CCcccCChhH
Confidence 4578899999 99999999999999999999999765 345 5555431100 0000001111
Q ss_pred HHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCC--CcccccccCCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeC-
Q 001108 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL--NPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPSIIFMDE- 1033 (1156)
Q Consensus 958 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l--~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~-~~p~illLDE- 1033 (1156)
. +++.+...- .......+.+.+.+ .+..+.. ...+|+|++|+..+++++. .+|+++||||
T Consensus 223 ~-~~I~~~~q~----------~~~~~~t~~~nl~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 223 Y-PQMALGHQR----------YIDYAVRHSHKIAFIDTDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp H-HHHHHHHHH----------HHHHHHHHCSSEEEESSCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred H-HHHHHHHHH----------HHHHHHhccCCEEEEeCCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 1 223221100 00000000000000 0000111 1135667778888888775 5999999999
Q ss_pred --CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1034 --PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1034 --PT------sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
|+ +++|+..+..+.+.|+++.+ .|.+||+++|. + +....++++.+++
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 65 68999999999999988754 48999999975 3 3455666655553
No 220
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.21 E-value=4e-15 Score=169.43 Aligned_cols=156 Identities=14% Similarity=0.103 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHhhhcCCCCC------CeEEEEEEEcCccCChh------------------cccceEEEe---c
Q 001108 895 VLTALMGVSGAGKTTLMDVLAGRKTG------GYITGNITISGYPKKQE------------------TFARISGYC---E 947 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g~~~~------~~~~G~i~i~g~~~~~~------------------~~~~~~gyv---~ 947 (1156)
++++|+|+||||||||++.|.|...+ .+..|+|.++|.++... .+.+.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999986421 13468888888765321 123345666 5
Q ss_pred cCCCCCCCCCHHHHHHHHH--Hh-hCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 001108 948 QNDIHSPFVTIYESLLFSA--WL-RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 1024 (1156)
Q Consensus 948 q~~~~~~~~Tv~e~l~~~~--~l-r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~ 1024 (1156)
|+..+.+..++.|+..++. .+ +.............++.++..+++.+..+... ++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 6555555666666654320 00 00000000000011122333344444443332 589999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001108 1025 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068 (1156)
Q Consensus 1025 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1068 (1156)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 999 67888888874 6899999999753
No 221
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.20 E-value=4.2e-14 Score=155.03 Aligned_cols=147 Identities=16% Similarity=0.204 Sum_probs=96.8
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhc---CCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHh-
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWL- 968 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~l- 968 (1156)
++++++|+||||||||||+++|+ |... +..|++.++|.+... .....+++++|+..+.+..++.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999 9765 556777777654321 1223345567777777888999998764321
Q ss_pred h-----CCCCCChHHHHHHHHHHHHH--cC------------CCcccccccCCCCCCCCCHHHHHHHHHHHHH-hcCCCE
Q 001108 969 R-----LSPEVDSETRKMFIDEVMEL--VE------------LNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL-VANPSI 1028 (1156)
Q Consensus 969 r-----~~~~~~~~~~~~~v~~~l~~--l~------------l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL-~~~p~i 1028 (1156)
. .. ...... ..++.+.+. ++ +..+.++. +..||| |+ ++| +.+|++
T Consensus 103 ~~~~~il~-g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~ 167 (246)
T 2bbw_A 103 RGQHWLLD-GFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHV 167 (246)
T ss_dssp TTSCEEEE-SCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSS
T ss_pred CCCeEEEE-CCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCcc
Confidence 0 00 011111 112222211 12 11122222 235888 55 677 899999
Q ss_pred EEEe----CCCCCCCHHHHHHHHHHHHHHHhCC
Q 001108 1029 IFMD----EPTSGLDARAAAIVMRTVRNTVDTG 1057 (1156)
Q Consensus 1029 llLD----EPTsgLD~~~~~~i~~~l~~~~~~g 1057 (1156)
++|| |||+|||..+...+++.++++.+++
T Consensus 168 lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 168 HGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999 9999999999999999999886553
No 222
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.18 E-value=1.3e-11 Score=134.20 Aligned_cols=151 Identities=19% Similarity=0.222 Sum_probs=84.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcCC--CCC---CeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHH
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTG---GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~ 963 (1156)
+-+++|++++|+||||||||||++.|++. ... +...|.+++++.... .......
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~---------------------~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF---------------------RPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------CHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---------------------CHHHHHH
Confidence 46899999999999999999999999983 221 112466777765420 0000000
Q ss_pred HHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH-HHHHHHHh--cCCCEEEEeCCCCCCCH
Q 001108 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR-LTIAVELV--ANPSIIFMDEPTSGLDA 1040 (1156)
Q Consensus 964 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr-l~iA~aL~--~~p~illLDEPTsgLD~ 1040 (1156)
....+ .... +++++.+.+ ....+..+... +.-+.+++ .+|++|++||||+.+|+
T Consensus 78 ~~~~~----g~~~-------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERY----GLSG-------SDVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHT----TCCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHc----CCCH-------HHHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 00000 0111 112221111 01245444332 33333444 58999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCcHHHH-------------------HhcCeEEEEecC
Q 001108 1041 R-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIF-------------------EAFDELFLMKRG 1084 (1156)
Q Consensus 1041 ~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~-------------------~~~d~v~~l~~G 1084 (1156)
. + ...+++.|+++++ .|+|||+++|.... .. ..+|.+++|.++
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~-~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ-VDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeec-CCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 3455566666654 49999999996542 21 168999999864
No 223
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.16 E-value=1.6e-12 Score=153.07 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=101.6
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh-------c--ccceEEEeccCCCCCC
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------T--FARISGYCEQNDIHSP 954 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~--~~~~~gyv~q~~~~~~ 954 (1156)
-++|||++++|++++|+|+||||||||+++|+|... +..|.|.++|.+.... . .++.++|++|+..+.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 368899999999999999999999999999999754 2358899987665321 1 2456899999988888
Q ss_pred CCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-cCCC-EEEEe
Q 001108 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPS-IIFMD 1032 (1156)
Q Consensus 955 ~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~-~~p~-illLD 1032 (1156)
.+|+++++.+... +. .++ -+++..|+.+... .+-..-+|++.+++++. ..|. +||..
T Consensus 361 ~~tV~e~l~~a~~-~~-~Dv----------VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKA-RN-IDV----------LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHH-TT-CSE----------EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHh-cC-CCE----------EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 8899999988642 11 000 0122222211111 12223457888888764 4574 55555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Q 001108 1033 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIH 1065 (1156)
Q Consensus 1033 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H 1065 (1156)
.||+|.|... .++.+.+ -|.|.|++||
T Consensus 420 DattGq~al~------~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAVS------QAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHHH------HHHHHHHHTCCSEEEEEC
T ss_pred cCcccHHHHH------HHHHHHhhcCCCEEEEEc
Confidence 5888866542 2333332 4889999999
No 224
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.16 E-value=2.7e-12 Score=149.60 Aligned_cols=172 Identities=13% Similarity=0.128 Sum_probs=102.7
Q ss_pred eeceeEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 168 LKDVSGVIKPGRL--TLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 168 L~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
|++||+.+++|++ ++|+||||||||||+++|+|..- .|...... .....++.++|++|++.+++.+||.|
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~~---~~~~~~~~i~~v~Q~~~l~~~ltv~D 101 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATHT---QPGVQLQSNTYDLQESNVRLKLTIVS 101 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C---CSSCEEEEEEEEEEC--CEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCCC---CccceEeeEEEEeecCccccccchhh
Confidence 9999999999999 99999999999999999999841 23211100 01112357899999988888999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHc-CCc----cccccccc---
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLD----VCADTMVG--- 317 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~----~~~dt~vg--- 317 (1156)
|+.|+.... .......+. .+ .....+.+|... ++. ...|+.|.
T Consensus 102 ~~~~g~~~~----~~~~~~~i~---------------~~----------i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v 152 (427)
T 2qag_B 102 TVGFGDQIN----KEDSYKPIV---------------EF----------IDAQFEAYLQEELKIRRVLHTYHDSRIHVCL 152 (427)
T ss_dssp EECCCC-CC----HHHHSHHHH---------------HH----------HHHHHHHHHHHC--CCCCCCCSCC--CCEEE
T ss_pred hhhhhhccc----cchhhhHHH---------------HH----------HHHHHHHHHHHHHhhhhhhcccccccccEEE
Confidence 997764211 000000000 00 111223333333 433 22233211
Q ss_pred ---ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 001108 318 ---DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 380 (1156)
Q Consensus 318 ---~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~ 380 (1156)
.....+|+-.+ +.|+++|..+++|+++|+|+..|.+.....+.+.+++-... .+..|+.
T Consensus 153 ~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~-~gi~I~~ 214 (427)
T 2qag_B 153 YFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS-NGVQIYQ 214 (427)
T ss_dssp EEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT-TBCCCCC
T ss_pred EEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHH-cCCcEEe
Confidence 01113566665 78999999999999999999999998888888888763332 3444443
No 225
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.16 E-value=6.5e-12 Score=143.57 Aligned_cols=122 Identities=17% Similarity=0.119 Sum_probs=84.5
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEc-CccCChhcccceEEEeccCCCCCCCCCHHHHH
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GYPKKQETFARISGYCEQNDIHSPFVTIYESL 962 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~-g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l 962 (1156)
++++++. .+|++++|+||||||||||+|+|+|.... +..|+|.++ |.+.. .+..+.++|++|+..+++..||+|+.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhh
Confidence 3444443 37999999999999999999999997541 357888887 65542 23456789999998888888888841
Q ss_pred HHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 001108 963 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 1022 (1156)
Q Consensus 963 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL 1022 (1156)
+ ...+.++..+.+.++++.+++.++.+... .+|| ||+||++||+++
T Consensus 283 -----l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 -----L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp -----C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred -----h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 1 12344555667788999999988887764 4699 999999999864
No 226
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.14 E-value=6.1e-11 Score=140.72 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=69.0
Q ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1006 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~----~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++..+|.++|+|||++ ...+.||+++.|
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 359999999999999999 58999999999999999999999999999866688999999995 467889999998
Q ss_pred ec
Q 001108 1082 KR 1083 (1156)
Q Consensus 1082 ~~ 1083 (1156)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 227
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.13 E-value=2.7e-11 Score=131.71 Aligned_cols=45 Identities=24% Similarity=0.272 Sum_probs=33.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhc--CCCCC--CCceeEEEEcCc
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAG--KLDPT--LKVSGTVTYNGH 217 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G--~~~~~--~~~~G~V~~nG~ 217 (1156)
+-+++|++++|+||||||||||++.|++ .+++. ..-.|.+.+++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 5689999999999999999999999999 44431 001455665553
No 228
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.13 E-value=8e-12 Score=144.95 Aligned_cols=131 Identities=18% Similarity=0.267 Sum_probs=92.6
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1156)
+|++++ +++|++++|+|||||||||||++|+|.++++ .+|+|.+.|.++. ...+..++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 677776 7999999999999999999999999998762 1699988776653 33345677787731
Q ss_pred HHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCCh
Q 001108 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (1156)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1156)
+|++ ...+
T Consensus 191 -----------------------------------------------------------~g~~-----------~~~~-- 198 (372)
T 2ewv_A 191 -----------------------------------------------------------VGED-----------TKSF-- 198 (372)
T ss_dssp -----------------------------------------------------------BTTT-----------BSCS--
T ss_pred -----------------------------------------------------------cCCC-----------HHHH--
Confidence 0010 0123
Q ss_pred hHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 327 GqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
+.+|+++|..+|+++++|||+ |..+... .++. +. .+.+ |++++|. .++.+.+|+++.|.
T Consensus 199 ----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~-~g~~-vi~t~H~-~~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ----ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AE-TGHL-VFGTLHT-NTAIDTIHRIVDIF 257 (372)
T ss_dssp ----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HT-TTCE-EEECCCC-CSHHHHHHHHHHTS
T ss_pred ----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-Hh-cCCE-EEEEECc-chHHHHHHHHHHhc
Confidence 468999999999999999999 7766443 3433 22 3444 4555555 44788888887664
No 229
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.13 E-value=1.7e-12 Score=151.82 Aligned_cols=170 Identities=13% Similarity=0.127 Sum_probs=97.0
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHH
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~ 963 (1156)
-++|+++++.|+.++|+|+|||||||||++|+|... .+.+++... ....+|++.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT--l~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT--LSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS--SCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccce--ecceeeEEEecCc--ceEEEEeccc
Confidence 379999999999999999999999999999998642 234443221 2223555555431 0011111000
Q ss_pred HHHHhhCCCCCChHHHH--HHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001108 964 FSAWLRLSPEVDSETRK--MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1156)
Q Consensus 964 ~~~~lr~~~~~~~~~~~--~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1041 (1156)
+...............+ +.++.++..+++. +.. ...||+|++|++.+|++|+.+|.||+| +++|+.
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 00000000001111000 0111223333332 111 246999999999999999999999999 999997
Q ss_pred HHHHHHHHHHH-HHhCCCEEEEEe-cCCcHHHHHhcCeEE
Q 001108 1042 AAAIVMRTVRN-TVDTGRTVVCTI-HQPSIDIFEAFDELF 1079 (1156)
Q Consensus 1042 ~~~~i~~~l~~-~~~~g~tvi~~~-H~~~~~i~~~~d~v~ 1079 (1156)
.+. .++.+++ +.+.|.+++.+| |... .+.++++.+.
T Consensus 283 ~~~-~~~~l~~~l~~~g~~vi~iSA~~g~-gi~eL~~~i~ 320 (416)
T 1udx_A 283 EEE-AVKALADALAREGLAVLPVSALTGA-GLPALKEALH 320 (416)
T ss_dssp CHH-HHHHHHHHHHTTTSCEEECCTTTCT-THHHHHHHHH
T ss_pred hHH-HHHHHHHHHHhcCCeEEEEECCCcc-CHHHHHHHHH
Confidence 763 4444444 444577776555 4433 4666665543
No 230
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.12 E-value=6.6e-12 Score=143.52 Aligned_cols=121 Identities=19% Similarity=0.152 Sum_probs=79.2
Q ss_pred eeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCceeEEEEc-CccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYN-GHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~n-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.++|++|+..++++.||+|
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHH
Confidence 4555554 4799999999999999999999999998 87 8999987 765432 23467999999988888889988
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
+ +. .+.. . .+ ....+.++++.+|+....|.. ..++|
T Consensus 281 ~---~l--~~l~-~----~e-----------------------------~~~~~~e~l~~~gl~~f~~~~-----~~~lS 316 (358)
T 2rcn_A 281 F---GL--WHLE-P----EQ-----------------------------ITQGFVEFHDYLGHCKYRDCK-----HDADP 316 (358)
T ss_dssp C---CC--CCCC-H----HH-----------------------------HHHTSGGGGGGTTCSSSTTCC-----SSSCT
T ss_pred h---hh--cCCC-H----HH-----------------------------HHHHHHHHHHHcCCchhcCCC-----cccCC
Confidence 4 21 1100 0 00 011233456677887666544 34699
Q ss_pred hhHHHHHHHHHHH
Q 001108 326 GGQKKRVTTGEMM 338 (1156)
Q Consensus 326 GGqrqRvsia~al 338 (1156)
||+||++||+++
T Consensus 317 -G~~~r~ala~gl 328 (358)
T 2rcn_A 317 -GCAIREAVENGA 328 (358)
T ss_dssp -TCHHHHHHHHTS
T ss_pred -HHHHHHHHHhcC
Confidence 999999999865
No 231
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.11 E-value=1.4e-13 Score=156.68 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=96.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC--------CCCCCceeEEEEcCccCCCcCc------------------cceEEEE
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKL--------DPTLKVSGTVTYNGHDMDEFVP------------------QRTAAYI 231 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~--------~~~~~~~G~V~~nG~~~~~~~~------------------~~~~~yv 231 (1156)
=++++|+|+|||||||||+.|+|.. .++ .|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l 80 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 80 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHH
Confidence 3689999999999999999999986 455 8999999988754321 1335555
Q ss_pred ---cCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHH---HHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHH
Q 001108 232 ---SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTEL---ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKV 305 (1156)
Q Consensus 232 ---~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~ 305 (1156)
+|+..+++..+|.||+.++... ...... ...... ..++.++..
T Consensus 81 ~~~~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~~~~~~------------------------~~l~~~l~~ 129 (318)
T 1nij_A 81 LDNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHEVLCQR------------------------YLLDGVIAL 129 (318)
T ss_dssp HHHHHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSHHHHHH------------------------EEEEEEEEE
T ss_pred HhHHhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCccccCe------------------------EEECCEEEE
Confidence 4655555667777776543100 000000 000000 000111222
Q ss_pred cCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh
Q 001108 306 LGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 385 (1156)
Q Consensus 306 lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~ 385 (1156)
+++.+..+... .+|||||||+..+++++..|+++ ||| ..+.+.|+++. .+.+ |+.++|..
T Consensus 130 vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~-ii~~sh~~ 189 (318)
T 1nij_A 130 VDAVHADEQMN------QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAP-VYTVTHGD 189 (318)
T ss_dssp EETTTHHHHHH------HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSC-EEECCSSC
T ss_pred EEHHHHHHHHh------hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCe-EEEecccC
Confidence 33333322221 48999999999889999999987 998 67777777652 3344 44455544
Q ss_pred hhHHhhc
Q 001108 386 PETYDLF 392 (1156)
Q Consensus 386 ~~~~~~~ 392 (1156)
.++..++
T Consensus 190 ~~~~~l~ 196 (318)
T 1nij_A 190 IDLGLLF 196 (318)
T ss_dssp CCGGGGS
T ss_pred CCHHHHh
Confidence 4444444
No 232
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.10 E-value=2.3e-12 Score=131.04 Aligned_cols=78 Identities=23% Similarity=0.092 Sum_probs=64.6
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHH
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 960 (1156)
+.++++|||++++|++++|+||||||||||+++|+|.. + ..|+|.++|.++......+ .|++|+..++ .+||.|
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHH
Confidence 45899999999999999999999999999999999976 3 4799999998764321111 3789988888 899999
Q ss_pred HHHH
Q 001108 961 SLLF 964 (1156)
Q Consensus 961 ~l~~ 964 (1156)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.09 E-value=5.6e-12 Score=143.32 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=94.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh-------cccce--EEEeccCCCCCCCCCHHHH
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TFARI--SGYCEQNDIHSPFVTIYES 961 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~--~gyv~q~~~~~~~~Tv~e~ 961 (1156)
.++|++++|+||||||||||+++|+|... +..|+|.+.|.+.... .+++. +.|++|...+.|.+||+|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 36899999999999999999999999654 3468899998875421 11223 4599999988899999999
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001108 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1156)
Q Consensus 962 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1041 (1156)
+.+...... +. -+++..++.+..+. =.++.-.|++++..++.+++||.+|. .
T Consensus 204 l~~~~~~~~--d~----------vliDtaG~~~~~~~------------l~~eL~~i~ral~~de~llvLDa~t~-~--- 255 (328)
T 3e70_C 204 IQHAKARGI--DV----------VLIDTAGRSETNRN------------LMDEMKKIARVTKPNLVIFVGDALAG-N--- 255 (328)
T ss_dssp HHHHHHHTC--SE----------EEEEECCSCCTTTC------------HHHHHHHHHHHHCCSEEEEEEEGGGT-T---
T ss_pred HHHHHhccc--hh----------hHHhhccchhHHHH------------HHHHHHHHHHHhcCCCCEEEEecHHH-H---
Confidence 987532110 00 01122222221111 12233348899988888888995554 3
Q ss_pred HHHHHHHHHHHHH-hCCCEEEEEecC
Q 001108 1042 AAAIVMRTVRNTV-DTGRTVVCTIHQ 1066 (1156)
Q Consensus 1042 ~~~~i~~~l~~~~-~~g~tvi~~~H~ 1066 (1156)
.+++.++.+. ..|.|+|++||.
T Consensus 256 ---~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 256 ---AIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp ---HHHHHHHHHHHHSCCCEEEEECG
T ss_pred ---HHHHHHHHHHHhcCCCEEEEeCc
Confidence 4445555554 348999999995
No 234
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.09 E-value=5.4e-11 Score=119.75 Aligned_cols=44 Identities=9% Similarity=0.179 Sum_probs=37.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCC
Q 001108 1023 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQP 1067 (1156)
Q Consensus 1023 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~t-vi~~~H~~ 1067 (1156)
+.+|++|+||||++ +|...+..+.+++..+.++|++ ||+++|.+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 45799999999998 6665588899999988877888 88899864
No 235
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.08 E-value=6.9e-12 Score=140.37 Aligned_cols=132 Identities=16% Similarity=0.184 Sum_probs=83.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQG 255 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 255 (1156)
+++.+++|.||+|||||||.+.|++.+.+. | .. .+.+.+|+|++.+++ .++++|+.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~----g------~~------~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK----Y------GG------EKSIGYASIDDFYLT-HEDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH----H------GG------GSCEEEEEGGGGBCC-HHHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc----C------CC------CceEEEeccccccCC-hHHHHHHhccccccc
Confidence 367899999999999999999999998652 2 10 234666799887775 588999987631000
Q ss_pred CCchhhHhHHHHHHHHhcCCCCC-CChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc------cccccccCCCChhH
Q 001108 256 VGTRYEMLTELARREKAAGIKPD-PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT------MVGDEMIRGISGGQ 328 (1156)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------~vg~~~~~~LSGGq 328 (1156)
.-. ..+ .|+ .|.+ .....++.+.. ..+| .+. .+...+||||
T Consensus 92 l~~-------------~~g-~p~a~d~~---------------~l~~~l~~l~~--g~~t~~~~~v~~p-~y~~~~sgGq 139 (290)
T 1odf_A 92 LLQ-------------GRG-LPGTHDMK---------------LLQEVLNTIFN--NNEHPDQDTVVLP-KYDKSQFKGE 139 (290)
T ss_dssp GGS-------------SSC-STTSBCHH---------------HHHHHHHHHTC--------CCEEEEC-CEETTHHHHT
T ss_pred hhh-------------hcc-CcchhHHH---------------HHHHHHHHhhc--cCccccCcceeec-cCccccCCcc
Confidence 000 000 011 1111 11223444422 2122 122 2335799999
Q ss_pred HHHHHHH--HHHhcCCccceeecCCCCCCHHH
Q 001108 329 KKRVTTG--EMMVGPALALFMDEISTGLDSST 358 (1156)
Q Consensus 329 rqRvsia--~al~~~p~vllLDEptsgLD~~~ 358 (1156)
+||+.+| +++ +|+|+|+|||++++|+..
T Consensus 140 ~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 140 GDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccccccceEc--CCCEEEEeCccccCCccc
Confidence 9999997 555 899999999999999864
No 236
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.08 E-value=2.2e-11 Score=143.48 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=69.3
Q ss_pred eeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc------C---ccceEEEEcCCCCCC
Q 001108 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF------V---PQRTAAYISQHDNHI 238 (1156)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~------~---~~~~~~yv~Q~d~~~ 238 (1156)
-+++|+.+++|++++|+||||||||||+++|+|++.++ +|+|.++|.+.... . .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999999877 89999987765332 1 135689999998888
Q ss_pred CCCCHHHHHHHHh
Q 001108 239 GEMTVRETLAFSA 251 (1156)
Q Consensus 239 ~~lTV~E~l~f~~ 251 (1156)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999998864
No 237
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.07 E-value=1.3e-11 Score=140.23 Aligned_cols=74 Identities=16% Similarity=0.098 Sum_probs=62.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---------cceEEEEcCCCCCCCCCCHHH
Q 001108 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---------QRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.++|++++|+||||||||||++.|+|.+.|+ +|+|.++|.++..... +..+.|++|.....|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 3789999999999999999999999999887 8999999988654321 123569999988899999999
Q ss_pred HHHHHh
Q 001108 246 TLAFSA 251 (1156)
Q Consensus 246 ~l~f~~ 251 (1156)
|+.++.
T Consensus 203 ~l~~~~ 208 (328)
T 3e70_C 203 AIQHAK 208 (328)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 238
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.07 E-value=8.9e-13 Score=135.77 Aligned_cols=138 Identities=15% Similarity=0.208 Sum_probs=82.2
Q ss_pred eEEEEEcCCCCcHHHHHhhhcCCCCC-CeEEEEEEEcCccCC------hhccc-ceEE----EeccCCCCCCCCCHHHHH
Q 001108 895 VLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKK------QETFA-RISG----YCEQNDIHSPFVTIYESL 962 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g~~~~-~~~~G~i~i~g~~~~------~~~~~-~~~g----yv~q~~~~~~~~Tv~e~l 962 (1156)
++++|+|+||||||||+++|+|...+ |...|.|.++|.++. ...++ +.+| +++|+..++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--------- 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--------- 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---------
Confidence 58999999999999999999996431 233799999997732 12333 3456 788876543
Q ss_pred HHHHHhhCCCCCChHHHHHHHHHHHHH-cCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE-------EEeCC
Q 001108 963 LFSAWLRLSPEVDSETRKMFIDEVMEL-VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII-------FMDEP 1034 (1156)
Q Consensus 963 ~~~~~lr~~~~~~~~~~~~~v~~~l~~-l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~il-------lLDEP 1034 (1156)
++. ... +....++++++. +. + .|..++. +||||||||++|||+++.+|+|. .=|.|
T Consensus 74 -----i~~---~~~-~~~a~l~~~i~~~l~--g-~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 74 -----IRR---VSE-EEGNDLDWIYERYLS--D-YDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp -----EEE---CCH-HHHTCHHHHHHHHTT--T-CSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred -----Eec---CCh-hhhhCHHHHHHhhCC--C-CCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 110 001 111124455554 43 2 3555553 59999999999999999999762 23554
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCC
Q 001108 1035 TSG---LDARAAAIVMRTVRNTVDTG 1057 (1156)
Q Consensus 1035 Tsg---LD~~~~~~i~~~l~~~~~~g 1057 (1156)
..+ +|......+.+.|.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 23344456666665555554
No 239
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.06 E-value=4.6e-13 Score=153.37 Aligned_cols=164 Identities=12% Similarity=0.118 Sum_probs=103.7
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh-------cccceEEEeccCCCCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TFARISGYCEQNDIHSP 954 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~q~~~~~~ 954 (1156)
.+|+++|+++++|++++|+|+||||||||+++|+|... +..|+|.+.|.+.... ..++.++|++|++..++
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence 47999999999999999999999999999999998654 2357788888665321 13456899999887764
Q ss_pred CC------------CHHHHHHHHH-------------------HhhCCC-------CCC-hHHHHHHHHHHHHHcCCC--
Q 001108 955 FV------------TIYESLLFSA-------------------WLRLSP-------EVD-SETRKMFIDEVMELVELN-- 993 (1156)
Q Consensus 955 ~~------------Tv~e~l~~~~-------------------~lr~~~-------~~~-~~~~~~~v~~~l~~l~l~-- 993 (1156)
.. +++|.+...- .+.... +.. ..+.......+++...+.
T Consensus 121 ~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvl 200 (337)
T 2qm8_A 121 RPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAV 200 (337)
T ss_dssp ECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEE
T ss_pred ccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEE
Confidence 32 2333331100 000000 000 000000000111221111
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001108 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055 (1156)
Q Consensus 994 ~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~------~p~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1055 (1156)
+..|.. ....+|+|++|++..|++++. +|++++ ||++|......+++.|.++..
T Consensus 201 NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 201 NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 111210 013579999999999999987 688887 999999999999999988654
No 240
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.04 E-value=1e-10 Score=121.48 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=41.8
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001108 1023 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068 (1156)
Q Consensus 1023 ~~~p~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1068 (1156)
+.+|++|+||||++ ++|+..+..+.+++....++|+++|++||.+.
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 45999999999995 99999999999999988778999999999875
No 241
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.01 E-value=1.9e-12 Score=148.36 Aligned_cols=180 Identities=14% Similarity=0.060 Sum_probs=108.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-------CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-------~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+++|+.+++|++++|+||||||||||+++|+|.+.|+ +|+|.+.|.++... ..++.++|++|++..+
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 4899999999999999999999999999999999999887 89999999876432 1245689999987776
Q ss_pred CCC------------CHHHHHHHHhhhc--------CCCchhhHhHHHHHHHHhcCC---CCCCC-hHHHHHHHhhhhhh
Q 001108 239 GEM------------TVRETLAFSARCQ--------GVGTRYEMLTELARREKAAGI---KPDPD-IDVYMKAIATEGQE 294 (1156)
Q Consensus 239 ~~l------------TV~E~l~f~~~~~--------~~~~~~~~~~~~~~~~~~~~~---~~~~d-~~~~~~~~~~~~~~ 294 (1156)
... +++|.+... ... .+|-.... .. .+...++ .-+.. -+. .+.
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~-~~~~~~~iliDT~Gi~~~~-~~---v~~~~d~vl~v~d~~~~~~-~~~------- 186 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLC-EAAGFDVILVETVGVGQSE-TA---VADLTDFFLVLMLPGAGDE-LQG------- 186 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHH-HHTTCCEEEEEECSSSSCH-HH---HHTTSSEEEEEECSCC--------------
T ss_pred cccCcccccccchHHHHHHHHHHH-hcCCCCEEEEECCCCCcch-hh---HHhhCCEEEEEEcCCCccc-HHH-------
Confidence 532 233333110 000 01111000 00 0111110 00000 000 000
Q ss_pred hHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHHH
Q 001108 295 ANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLRQ 368 (1156)
Q Consensus 295 ~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~------~p~vllLDEptsgLD~~~~~~i~~~L~~ 368 (1156)
.......+...+.+ +..|.. ..+.+|+|++|++..+.+++. .|++++ +|++|......+++.|.+
T Consensus 187 i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 187 IKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred HHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 00001111122222 122210 113479999999999998887 577776 999999999999999876
Q ss_pred HH
Q 001108 369 NI 370 (1156)
Q Consensus 369 ~~ 370 (1156)
..
T Consensus 258 ~~ 259 (337)
T 2qm8_A 258 HR 259 (337)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 242
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.00 E-value=1.4e-13 Score=165.63 Aligned_cols=177 Identities=15% Similarity=0.135 Sum_probs=106.0
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHH
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~ 961 (1156)
.+++++++.+++|+.++|+|||||||||||++|+|... +..|.|.+.|.+.-.....+.+++..|........|..+.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~ 325 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDL 325 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHH
Confidence 47899999999999999999999999999999999775 3478899988652111112345555554332222344444
Q ss_pred HHHHHHhhCCC------CCChHHHHH------------------HHHHHHHHcCCCc--ccccccC-CC----CCCCCCH
Q 001108 962 LLFSAWLRLSP------EVDSETRKM------------------FIDEVMELVELNP--LRQSLVG-LP----GVSGLST 1010 (1156)
Q Consensus 962 l~~~~~lr~~~------~~~~~~~~~------------------~v~~~l~~l~l~~--~~~~~~~-~~----~~~~LSg 1010 (1156)
+... +|..+ ++...+... .+.++++.+...+ ....... .. ....+|+
T Consensus 326 l~~~--LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 326 LRAA--LRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHTT--GGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHh--hccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 3321 22111 111111100 1223333333211 0000000 00 0124799
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCcHHHHHhc
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPSIDIFEAF 1075 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~--~~H~~~~~i~~~~ 1075 (1156)
|||||+++|. + | |+|||+.+...+++.|.++...|+|+++ ++|+++ ++...+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 9999987752 2 7 9999999888888888777667899985 899875 455555
No 243
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.00 E-value=8.4e-10 Score=128.25 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=73.3
Q ss_pred HHHHHHHHcCCcc-------cccccccc----cccCCCChhHHHHH------HHHHHHhcC-CccceeecCCCCCCHHHH
Q 001108 298 ITDYYLKVLGLDV-------CADTMVGD----EMIRGISGGQKKRV------TTGEMMVGP-ALALFMDEISTGLDSSTT 359 (1156)
Q Consensus 298 ~~~~~l~~lgL~~-------~~dt~vg~----~~~~~LSGGqrqRv------sia~al~~~-p~vllLDEptsgLD~~~~ 359 (1156)
.++..++.++++. ..+..+.+ ..+..||||||||+ ++|++++.+ |++|||||||+|||+..+
T Consensus 244 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~ 323 (371)
T 3auy_A 244 YLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRR 323 (371)
T ss_dssp HHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHH
Confidence 3455677777765 12222222 34567999999988 557888999 999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 360 FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 360 ~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..+.+.|+++. .+++++ .++|+. ++...+|++++|+
T Consensus 324 ~~l~~~l~~~~--~~~~vi-~~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 324 AKLAEIFRKVK--SIPQMI-IITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHCC--SCSEEE-EEESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHHhc--cCCeEE-EEEChH-HHHhhCCEEEEEE
Confidence 99999998742 234544 455664 5789999999997
No 244
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.98 E-value=2.3e-11 Score=136.17 Aligned_cols=131 Identities=12% Similarity=0.038 Sum_probs=82.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHH----H
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA----W 967 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~----~ 967 (1156)
+++.++||+|++|||||||.+.|.+.... .| . -.+.+.+|+|++.+++ .++++++.+.. .
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~------~~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G------GEKSIGYASIDDFYLT-HEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G------GGSCEEEEEGGGGBCC-HHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C------CCceEEEeccccccCC-hHHHHHHhccccccch
Confidence 46789999999999999999999985431 11 0 0234556699988775 47888888752 1
Q ss_pred hhCCCCCChHHHHHHHHHHHHHcCCCc--c--cccccCCCCCCCCCHHHHHHHHHH--HHHhcCCCEEEEeCCCCCCCHH
Q 001108 968 LRLSPEVDSETRKMFIDEVMELVELNP--L--RQSLVGLPGVSGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGLDAR 1041 (1156)
Q Consensus 968 lr~~~~~~~~~~~~~v~~~l~~l~l~~--~--~~~~~~~~~~~~LSgGqrqrl~iA--~aL~~~p~illLDEPTsgLD~~ 1041 (1156)
+.. ...+.....+...+.++.+.... . ....+.. ....+||||+||+.+| +++ +|+|||+||||+++|+.
T Consensus 93 ~~~-~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~-y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 93 LQG-RGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPK-YDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GSS-SCSTTSBCHHHHHHHHHHHTC------CCEEEECC-EETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred hhh-ccCcchhHHHHHHHHHHHhhccCccccCcceeecc-CccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 111 01111111233455566553320 0 0000110 1246899999999997 555 89999999999999985
Q ss_pred H
Q 001108 1042 A 1042 (1156)
Q Consensus 1042 ~ 1042 (1156)
.
T Consensus 169 ~ 169 (290)
T 1odf_A 169 L 169 (290)
T ss_dssp C
T ss_pred c
Confidence 3
No 245
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.97 E-value=8e-12 Score=146.49 Aligned_cols=137 Identities=16% Similarity=0.163 Sum_probs=90.1
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-------ccceEEEEc-----
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYIS----- 232 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-------~~~~~~yv~----- 232 (1156)
..+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.+.|.++.... ..+.++|.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 3477887 4 3899999999999999999999999999887 899999998764211 122344443
Q ss_pred ----CCCCC--CCC----CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHH
Q 001108 233 ----QHDNH--IGE----MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302 (1156)
Q Consensus 233 ----Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 302 (1156)
|++.. +++ .|+.+++.++..-..+-.. + ...+ ....++ .
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t---------------l-h~~~--------------~~~~i~-r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST---------------L-HTNT--------------AVGAVT-R 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE---------------E-CCSS--------------SHHHHH-H
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc---------------c-chhh--------------HHHHHH-H
Confidence 87654 344 5888888765321100000 0 0000 001112 3
Q ss_pred HHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccce
Q 001108 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346 (1156)
Q Consensus 303 l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vll 346 (1156)
|..+|++... ....|||||+|| ||++|+.+|++..
T Consensus 280 L~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 5567776432 223699999999 9999999999865
No 246
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.97 E-value=2.5e-10 Score=133.00 Aligned_cols=151 Identities=21% Similarity=0.250 Sum_probs=87.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhh--cCCCC---CCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHH
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVL--AGRKT---GGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L--~g~~~---~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~ 963 (1156)
+-|++|++++|+||||||||||+..| .+... ++...+.+++++..... . +.+.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~---------------------~-~rl~ 230 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR---------------------P-VRLV 230 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC---------------------H-HHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC---------------------H-HHHH
Confidence 57899999999999999999999954 45432 11223567777654210 0 0010
Q ss_pred -HHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH-HHHHHHHHHHHHh--cCCCEEEEeCCCCCCC
Q 001108 964 -FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST-EQRKRLTIAVELV--ANPSIIFMDEPTSGLD 1039 (1156)
Q Consensus 964 -~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg-Gqrqrl~iA~aL~--~~p~illLDEPTsgLD 1039 (1156)
....+. ... +.+++.+-+ . ...+. .+.+.+..+.+++ .+|++|++||||+.+|
T Consensus 231 ~~a~~~g----l~~-------~~vleni~~--------~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 231 SIAQRFG----LDP-------DDALNNVAY--------A----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHTT----CCH-------HHHHHTEEE--------E----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred HHHHHcC----CCh-------HhHhhcEEE--------e----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 000000 010 112221111 0 01222 2334444444443 4699999999999999
Q ss_pred HHHH------------HHHHHHHHHHHhC-CCEEEEEecCCc------------------HHHHHhcCeEEEEecC
Q 001108 1040 ARAA------------AIVMRTVRNTVDT-GRTVVCTIHQPS------------------IDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1040 ~~~~------------~~i~~~l~~~~~~-g~tvi~~~H~~~------------------~~i~~~~d~v~~l~~G 1084 (1156)
+... ..+++.|++++++ |+|||+|+|..+ ..+...+|.++.|.++
T Consensus 288 ~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 288 TDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 6533 5678888888754 999999999821 1234567999999864
No 247
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.97 E-value=1e-10 Score=131.88 Aligned_cols=123 Identities=12% Similarity=0.116 Sum_probs=79.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEE---cCccCCCcCc--c-ceEEEEcCCCCCC-----CCCCHH
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY---NGHDMDEFVP--Q-RTAAYISQHDNHI-----GEMTVR 244 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---nG~~~~~~~~--~-~~~~yv~Q~d~~~-----~~lTV~ 244 (1156)
.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|.+++.... + +.+|||+|++.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 458999999999999999999999 88887 999999 8987654321 1 2589999987543 78999
Q ss_pred HHH--HHHhhhcCCCchhhHhHHH-HHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-cccccccccc
Q 001108 245 ETL--AFSARCQGVGTRYEMLTEL-ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEM 320 (1156)
Q Consensus 245 E~l--~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~ 320 (1156)
|++ .|+. . .+. |+. .+..+. .+....++++++.++|+. .++..
T Consensus 238 e~l~~~f~~-~----------~~~~c~~---~~~~~~--------------~e~~~~v~~~l~~~~L~~~~~~~~----- 284 (302)
T 2yv5_A 238 REVRNYFRE-F----------LRYQCKY---PDCTHT--------------NEPGCAVKEAVKNGEISCERYKSY----- 284 (302)
T ss_dssp GGGGGGCGG-G----------HHHHHHS---TTCCSS--------------SCTTCHHHHHHHTTSSCHHHHHHH-----
T ss_pred HHHHHHHHH-H----------HHccCCC---CCCCCC--------------CCCCCHHHHHHHcCCCCHHHHHHH-----
Confidence 888 4431 0 000 100 000000 011224677888999975 55544
Q ss_pred cCCCChhHHHHHHHHH
Q 001108 321 IRGISGGQKKRVTTGE 336 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~ 336 (1156)
.+.|||.++|++.|||
T Consensus 285 ~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 285 LKIIKVYLEEIKELCR 300 (302)
T ss_dssp HHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3469998899999886
No 248
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.96 E-value=3.6e-11 Score=135.61 Aligned_cols=122 Identities=15% Similarity=0.186 Sum_probs=81.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEE---cCccCChh--ccc-ceEEEeccCCCCC-----CCCCHH
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQE--TFA-RISGYCEQNDIHS-----PFVTIY 959 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gyv~q~~~~~-----~~~Tv~ 959 (1156)
+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|.+.... ... +.+||++|.+.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 4579999999999999999999999 765 45799999 88765432 112 2479999998664 67899
Q ss_pred HHH--HHHH----HhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHH
Q 001108 960 ESL--LFSA----WLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVE 1021 (1156)
Q Consensus 960 e~l--~~~~----~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~iA~a 1021 (1156)
|++ .|.. ..+.......++....+.++++.++|.+ ..+... ..|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 888 4531 0111111111223356889999999986 555553 3599999999999873
No 249
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.96 E-value=2.7e-12 Score=154.46 Aligned_cols=85 Identities=20% Similarity=0.188 Sum_probs=66.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
..+++++++.+++|+.++|+|||||||||||++|+|.++|+ +|.|+++|.+--.......++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 34789999999999999999999999999999999999988 899999986522221234577777765433456888
Q ss_pred HHHHHHhh
Q 001108 245 ETLAFSAR 252 (1156)
Q Consensus 245 E~l~f~~~ 252 (1156)
+.+..+.+
T Consensus 324 ~~l~~~LR 331 (511)
T 2oap_1 324 DLLRAALR 331 (511)
T ss_dssp HHHHTTGG
T ss_pred HHHHHhhc
Confidence 88776554
No 250
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.95 E-value=6.6e-11 Score=122.86 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=36.6
Q ss_pred hcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 001108 339 VGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1156)
Q Consensus 339 ~~~p~vllLDEpts-gLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~ 387 (1156)
+.+|++|+||||++ ++|+.....+.+.+..... .+.++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 44899999999985 9999999988888876543 456777766555443
No 251
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.94 E-value=1e-10 Score=136.79 Aligned_cols=170 Identities=14% Similarity=0.138 Sum_probs=98.1
Q ss_pred eeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHH
Q 001108 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETL 247 (1156)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1156)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+.+.. ...+++|.+++. ..+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl--~p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTL--SPNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSS--CCEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCccccee--cceeeEEEecCc--ceEEEEecc
Confidence 479999999999999999999999999999999843 2334333322 224566665430 111221111
Q ss_pred HH---HhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 248 AF---SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 248 ~f---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
-+ +....+.+. ...+.. ..++.++..+++. +.....+
T Consensus 214 Gli~~a~~~~~L~~------~fl~~~--------------------------era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------EFLRHI--------------------------ARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCH------HHHHHH--------------------------TSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhH------HHHHHH--------------------------HHHHhhhEEeCCc--------cCCHHHH
Confidence 10 000000000 000000 0011122223332 2334469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
|+||+||+.+|++|+..|.++++ +++|...+ ..++.+++.....+.+++.+..+....+.++++.|
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999999999999999999999 99999876 55555555444334455554444444455555443
No 252
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.92 E-value=5.2e-10 Score=128.91 Aligned_cols=136 Identities=15% Similarity=0.014 Sum_probs=72.5
Q ss_pred EEEEcCCCCcHHHHHhhhcC-CCCCCeEEEEEEEcCccCChh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCC
Q 001108 897 TALMGVSGAGKTTLMDVLAG-RKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 974 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g-~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~ 974 (1156)
+.|.||||+|||||+++|++ ... +..|.+.++|.+.... .....+++++|.+.+....+ + . ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~--~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------M--GNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--h--------c--CCc
Confidence 89999999999999999998 333 2357888887654321 12345678887654311110 0 0 000
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001108 975 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054 (1156)
Q Consensus 975 ~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~ 1054 (1156)
... .+.+.++.+......+... .||| +..+|+++|+|||++ ||+.++..+.+.+.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1233333321111001110 2565 778999999999999 99999999999998864
Q ss_pred hCCCEEEEEecCCcH
Q 001108 1055 DTGRTVVCTIHQPSI 1069 (1156)
Q Consensus 1055 ~~g~tvi~~~H~~~~ 1069 (1156)
.++++|+++|+++.
T Consensus 163 -~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSP 176 (354)
T ss_dssp -TTEEEEEEESCSCS
T ss_pred -CCCEEEEEeCCHHH
Confidence 47899999999863
No 253
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.89 E-value=3.7e-13 Score=142.47 Aligned_cols=57 Identities=18% Similarity=0.129 Sum_probs=43.1
Q ss_pred HHH-HHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 334 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 334 ia~-al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
.++ +++.+|++++|||+|+++|..+...|.+.|....+.. .+.| .. ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~---~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK---EP-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG---ST-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh---cc-CCceEEEECCC
Confidence 455 7889999999999999999999999999887754421 1122 12 67899988875
No 254
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.88 E-value=8.2e-10 Score=128.69 Aligned_cols=62 Identities=8% Similarity=-0.014 Sum_probs=42.8
Q ss_pred cCCccceeecCCCCCCHHHH------------HHHHHHHHHHHHhcCCeEEEEEecCh-------------------hhH
Q 001108 340 GPALALFMDEISTGLDSSTT------------FQIVNCLRQNIHINSGTAVISLLQPA-------------------PET 388 (1156)
Q Consensus 340 ~~p~vllLDEptsgLD~~~~------------~~i~~~L~~~~~~~~~t~ii~i~q~~-------------------~~~ 388 (1156)
.+|+++++|||++.+|+... .++++.|+++++..+.++|+ ++|.. ..+
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIl-v~Hv~~~~~g~~~~~g~~~~p~gg~~l 350 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVV-TNQVVAQVDGGMAFNPDPKKPIGGNIM 350 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEEC--------------------CHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EEeecccCCccccccCCCccCCchhHH
Confidence 47999999999999997543 56788888888765656555 45541 224
Q ss_pred HhhcCeEEEEcCCe
Q 001108 389 YDLFDDIILLSDGQ 402 (1156)
Q Consensus 389 ~~~~D~iilL~~G~ 402 (1156)
...+|.++.|..|+
T Consensus 351 ~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 AYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHCSEEEEEEECS
T ss_pred HHhcceEEEEEecC
Confidence 56789999998653
No 255
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.87 E-value=1.1e-11 Score=143.61 Aligned_cols=168 Identities=17% Similarity=0.197 Sum_probs=114.6
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhc------------CCCCCCCceeEEEEcCccCCC----cCccceE---EEEcCC
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAG------------KLDPTLKVSGTVTYNGHDMDE----FVPQRTA---AYISQH 234 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G------------~~~~~~~~~G~V~~nG~~~~~----~~~~~~~---~yv~Q~ 234 (1156)
.+++|..++|+|+||||||||+++|+| ..+|+ +|.|.++|..++. +.+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~---~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE---EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT---EEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce---eeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 567899999999999999999999999 33455 8999999854311 2233333 467777
Q ss_pred CCCCCCCCHHHHH--HHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccc
Q 001108 235 DNHIGEMTVRETL--AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1156)
Q Consensus 235 d~~~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1156)
+.+...++..|++ .|-..++.. +.++..+...
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~--- 126 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAF--- 126 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECC---
T ss_pred cccccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhcc---
Confidence 7777777766655 332222110 0001111111
Q ss_pred cccccccccCCCChhHHHHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHH-HHhcCCeEEEEEecChhhHH
Q 001108 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQN-IHINSGTAVISLLQPAPETY 389 (1156)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~al~~~p--~vllLDEptsgLD~~~~~~i~~~L~~~-~~~~~~t~ii~i~q~~~~~~ 389 (1156)
++..+..+||+. +| +++++|||+.++|.......++.++.. .. .+.| |+ .|...++.
T Consensus 127 ----~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~t-i~--sh~~~~~~ 186 (392)
T 1ni3_A 127 ----DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANT-LE--MKAKKEEQ 186 (392)
T ss_dssp ----CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCS-SS--HHHHHHHH
T ss_pred ----ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCc-cc--cccHHHHH
Confidence 112233366653 88 999999999999999999999888875 32 3444 33 77888999
Q ss_pred hhcCeEE-EEcCC-eEEEEcChh
Q 001108 390 DLFDDII-LLSDG-QIVYQGPRE 410 (1156)
Q Consensus 390 ~~~D~ii-lL~~G-~iv~~G~~~ 410 (1156)
++||++. +|.+| ++++.|+.+
T Consensus 187 ~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 187 AIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHHhccCCceeecCCCC
Confidence 9999999 99999 988877654
No 256
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.85 E-value=3.1e-12 Score=149.90 Aligned_cols=135 Identities=15% Similarity=0.040 Sum_probs=89.0
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-------hcccceEEEec-------
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCE------- 947 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~------- 947 (1156)
.+|+++ + .++|++++|+|||||||||||++|+|... +..|.|.+.+.++.. ....+.+|+.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~ 232 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAI 232 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHH
Confidence 467887 4 38999999999999999999999999654 236888888876532 11223345544
Q ss_pred --cCCCC--CCC----CCHHHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 001108 948 --QNDIH--SPF----VTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI 1018 (1156)
Q Consensus 948 --q~~~~--~~~----~Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~i 1018 (1156)
|++.. .+. .|+.+++.+...-... ...........+ +.+..+++.+.. . ...|||||+|| |
T Consensus 233 Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~--~-----~~~LSgg~~QR--L 302 (418)
T 1p9r_A 233 LRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL--I-----SSSLLGVLAQR--L 302 (418)
T ss_dssp GGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH--H-----HHHEEEEEEEE--E
T ss_pred hccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH--H-----HHHHHHHHHHH--h
Confidence 87655 233 5889998875421100 000000111222 346677887653 2 24699999999 9
Q ss_pred HHHHhcCCCEEE
Q 001108 1019 AVELVANPSIIF 1030 (1156)
Q Consensus 1019 A~aL~~~p~ill 1030 (1156)
|++|+.+|+++.
T Consensus 303 araL~~~p~~~~ 314 (418)
T 1p9r_A 303 VRTLCPDCKEPY 314 (418)
T ss_dssp EEEECTTTCEEE
T ss_pred hhhhcCCCCccC
Confidence 999999999876
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.84 E-value=2.8e-11 Score=128.92 Aligned_cols=121 Identities=20% Similarity=0.155 Sum_probs=70.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 001108 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQ 254 (1156)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~ 254 (1156)
.++|++++|+||||||||||+++|+|.+++. | ..+++|+|++.++.. +..+++.... .+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g---------------~~~g~v~~d~~~~~~-~~~~~~~~~~-~~ 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G---------------LPAEVVPMDGFHLDN-RLLEPRGLLP-RK 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T---------------CCEEEEESGGGBCCH-HHHGGGTCGG-GT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C---------------CceEEEecCCCcCCH-HHHHHhcccc-cC
Confidence 4789999999999999999999999998753 2 135556655443321 1222210000 00
Q ss_pred CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHH
Q 001108 255 GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334 (1156)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsi 334 (1156)
+.... .+.+. ....+..+...+..++.+.+... ++||||+||+++
T Consensus 78 ~~~~~-------------------~~~~~---------------~~~~l~~l~~~~~i~~p~~d~~~-~~~~g~~~~v~~ 122 (208)
T 3c8u_A 78 GAPET-------------------FDFEG---------------FQRLCHALKHQERVIYPLFDRAR-DIAIAGAAEVGP 122 (208)
T ss_dssp TSGGG-------------------BCHHH---------------HHHHHHHHHHCSCEEEEEEETTT-TEEEEEEEEECT
T ss_pred CCCch-------------------hhHHH---------------HHHHHHHHhcCCceecccCCccc-cCCCCCceEEcC
Confidence 00000 00000 01111111111223344555444 489999999999
Q ss_pred H-HHHhcCCccceeecCC
Q 001108 335 G-EMMVGPALALFMDEIS 351 (1156)
Q Consensus 335 a-~al~~~p~vllLDEpt 351 (1156)
+ ++++.++.++++|||.
T Consensus 123 ~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 123 ECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TCCEEEEEESSTTBCSTT
T ss_pred CCcEEEECCceeccCCch
Confidence 8 8888898888899984
No 258
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.83 E-value=8e-12 Score=139.03 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=92.9
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCC-CCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGE 240 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~ 240 (1156)
..+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|.. ...+.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 34899999999999 999999999999999999998763 789999987643221 23456666642 33444
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1156)
+++.|++.+....++ .... + .+.... +..
T Consensus 106 i~~~Deid~~~~~r~--------------~~~~--------------------------~------~~~~~~-----~~~ 134 (274)
T 2x8a_A 106 VIFFDEVDALCPRRS--------------DRET--------------------------G------ASVRVV-----NQL 134 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHH-----HHH
T ss_pred eEeeehhhhhhcccC--------------CCcc--------------------------h------HHHHHH-----HHH
Confidence 555555543211000 0000 0 000111 122
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCC------------CCCHHHHHHHHHHH
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEIST------------GLDSSTTFQIVNCL 366 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEpts------------gLD~~~~~~i~~~L 366 (1156)
...|||||+||+.+++++..+|++| ||++. -.|...+.+|++.+
T Consensus 135 l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 135 LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 3359999999999999999999975 98864 23667777776644
No 259
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.80 E-value=3.3e-11 Score=128.38 Aligned_cols=148 Identities=13% Similarity=0.102 Sum_probs=78.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCCCC-CeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhh
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr 969 (1156)
.++|+++||+||||||||||+++|+|...+ |...|.|.++|+......... .+..... .
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~-~~~~~~~-------------------~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEP-RGLLPRK-------------------G 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGG-GTCGGGT-------------------T
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHH-hcccccC-------------------C
Confidence 478999999999999999999999996531 233566776665543211110 0000000 0
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH-HHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 001108 970 LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA-VELVANPSIIFMDEPTSGLDARAAAIVMR 1048 (1156)
Q Consensus 970 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA-~aL~~~p~illLDEPTsgLD~~~~~~i~~ 1048 (1156)
.+...+... ..+.+..+...+..+...... ...+|+||+||+++| ++++.++.++++|||.. .
T Consensus 79 ~~~~~~~~~----~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~ 142 (208)
T 3c8u_A 79 APETFDFEG----FQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------R 142 (208)
T ss_dssp SGGGBCHHH----HHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------G
T ss_pred CCchhhHHH----HHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCchh-----------H
Confidence 000001111 122222221111111111111 235799999999988 77788888877888741 1
Q ss_pred HHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 001108 1049 TVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077 (1156)
Q Consensus 1049 ~l~~~~~~g~tvi~~~H~~~~~i~~~~d~ 1077 (1156)
.++..+ -.+|++.+..+..+...+.|
T Consensus 143 ~l~~~~---d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 143 DLTAIW---DVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp GGGGTC---SEEEEECCCHHHHHHHHHHH
T ss_pred HHHHhc---CEEEEEeCCHHHHHHHHHHH
Confidence 122222 36677777654334444444
No 260
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.79 E-value=4e-09 Score=106.08 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=29.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
.+|+++ +|+.++|+||||||||||+++|++.+.+
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356666 8999999999999999999999998865
No 261
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.78 E-value=1.2e-11 Score=143.30 Aligned_cols=170 Identities=11% Similarity=0.083 Sum_probs=115.5
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHhhhcCCC----------CCCeEEEEEEEcCccCChh----cccce---EEEeccCCCC
Q 001108 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYITGNITISGYPKKQE----TFARI---SGYCEQNDIH 952 (1156)
Q Consensus 890 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~----------~~~~~~G~i~i~g~~~~~~----~~~~~---~gyv~q~~~~ 952 (1156)
.+++|..+||+|+||||||||+|+|+|.. +-.+..|.+.++|...... ..++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 56789999999999999999999999932 1235679999987432110 01122 2467777777
Q ss_pred CCCCCHHHHH--HHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC--CE
Q 001108 953 SPFVTIYESL--LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP--SI 1028 (1156)
Q Consensus 953 ~~~~Tv~e~l--~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p--~i 1028 (1156)
.+..+..|++ .|.+.++.. +.++..++..+ +. .+..+|++. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--cc-----eeeeecccc------------Ccchhh
Confidence 7777766655 444444321 11222222221 11 122355542 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCcHHHHHhcCeEE-EEecCc-EEEEecCCC
Q 001108 1029 IFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELF-LMKRGG-QEIYVGPLG 1094 (1156)
Q Consensus 1029 llLDEPTsgLD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~i~~~~d~v~-~l~~Gg-~~~~~g~~~ 1094 (1156)
+++|||+.++|+......++.++.. ...|.||+ +|... ++.+.||++. +|.+ | +.++.|...
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCC
Confidence 9999999999999999999999988 66688865 99875 5788999998 7775 5 667766654
No 262
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.77 E-value=8.4e-10 Score=124.41 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=51.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEE---cCccCCCcCc---cceEEEEcCCCC-----------
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY---NGHDMDEFVP---QRTAAYISQHDN----------- 236 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---nG~~~~~~~~---~~~~~yv~Q~d~----------- 236 (1156)
.+.+|++++|+|||||||||||++|+|...|+ +|+|.+ +|.+++.... .+.++||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999999998 999999 8987754321 135899999874
Q ss_pred -----CCCCCCHHHHHHHH
Q 001108 237 -----HIGEMTVRETLAFS 250 (1156)
Q Consensus 237 -----~~~~lTV~E~l~f~ 250 (1156)
+++++|+ ||+.|+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5888899 888875
No 263
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.72 E-value=3.5e-12 Score=134.91 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=42.0
Q ss_pred HHH-HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1018 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1018 iA~-aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+++ +++.+|++++|||||+++|..+.+.|.+.|.+.... +..+|.+ ..+|.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 677888888899999999999999999988876542 2334621 4689987765
No 264
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.71 E-value=7.1e-09 Score=119.39 Aligned_cols=135 Identities=15% Similarity=0.132 Sum_probs=67.0
Q ss_pred EEEEcCCCCcHHHHHHHHhc-CCCCCCCceeEEEEcCccCCCcC-ccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc
Q 001108 181 TLLLGPPSSGKTTLLLALAG-KLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 258 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G-~~~~~~~~~G~V~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 258 (1156)
++|.||||+|||||+++|+| .+.++ .|.+.++|.+..... .+..++|++|.+.+....+- .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD----------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHhh----------cCCcc
Confidence 89999999999999999999 56776 899999987654221 13567888886532111000 00000
Q ss_pred hhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHH
Q 001108 259 RYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338 (1156)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al 338 (1156)
. . .+...++.+......+..+ .+|| +
T Consensus 106 ~-~------------------------------------~~~~~i~~~~~~~~~~~~~------~ls~-----------l 131 (354)
T 1sxj_E 106 R-I------------------------------------VIQELLKEVAQMEQVDFQD------SKDG-----------L 131 (354)
T ss_dssp H-H------------------------------------HHHHHHHHHTTTTC---------------------------
T ss_pred h-H------------------------------------HHHHHHHHHHHhccccccc------cccc-----------c
Confidence 0 0 0011111111100001110 3566 7
Q ss_pred hcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 001108 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (1156)
Q Consensus 339 ~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~ 386 (1156)
.++|+++++|||++ ||..+...+.+.|.+. ..++++|.++|...
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~---~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKY---SKNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHS---TTTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhh---cCCCEEEEEeCCHH
Confidence 78999999999999 9999999999999864 23455555555543
No 265
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.70 E-value=9.1e-10 Score=123.55 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=67.0
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEE---cCccCChh-cccce-EEEeccCCCCCC----CCCHH
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQE-TFARI-SGYCEQNDIHSP----FVTIY 959 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~-~~~~~-~gyv~q~~~~~~----~~Tv~ 959 (1156)
+++.+|++++|+||||||||||+|+|+|... +..|+|.+ +|...... ...+. .||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5677999999999999999999999999765 46799988 77654321 12222 799999987765 6789
Q ss_pred HHHH--HHHH--h----hCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 960 ESLL--FSAW--L----RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 960 e~l~--~~~~--l----r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
|++. |... + +........+....+.++++.++|.+.+.... ..++.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 3311 1 11111111122345889999999986443321 246677766
No 266
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.67 E-value=1e-10 Score=134.09 Aligned_cols=153 Identities=21% Similarity=0.239 Sum_probs=92.4
Q ss_pred eEeeceeEEEeCC-------eEEEEEcCCCCcHHHHHHHHhcCCCCCC-CceeEEEEcCccCCCc---CccceEEEEcCC
Q 001108 166 TILKDVSGVIKPG-------RLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEF---VPQRTAAYISQH 234 (1156)
Q Consensus 166 ~iL~~vs~~i~~G-------~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~nG~~~~~~---~~~~~~~yv~Q~ 234 (1156)
.+++++++.+++| +.++|+||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.|+.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 4667777777665 7899999999999999999999873211 1266666655543221 113568999997
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+.+ ++.|++.......+.. ... ... .....++..+..++|.. +++
T Consensus 112 ~~l~~--~~~e~L~~~~~~~~~~----i~~--~~~------------------------~~~~~i~~~l~~~~li~-at~ 158 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIEDFQID----IMI--GKG------------------------PSAKSIRIDIQPFTLVG-ATT 158 (334)
T ss_dssp GGCCH--HHHHHHHHHHHTSCCC----C-----------------------------------------CCCEEEE-EES
T ss_pred hhcCH--HHHHHHHHHHHhcccc----eee--ccC------------------------cccccccccCCCeEEEE-ecC
Confidence 66554 7888885433211100 000 000 00011222333444533 444
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHh
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 372 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~ 372 (1156)
..+ .||+|+|||+.++ .+||+.+..++.+.|++.+..
T Consensus 159 ~~~-----~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 159 RSG-----LLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASL 195 (334)
T ss_dssp CGG-----GSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHH
T ss_pred Ccc-----cCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHH
Confidence 443 5999999998544 778888888999999877653
No 267
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.65 E-value=2.9e-10 Score=128.66 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=65.8
Q ss_pred EeeeeeEEE-------------------eCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEE---cCccCChhccc
Q 001108 883 LLNGVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQETFA 940 (1156)
Q Consensus 883 ~L~~vs~~i-------------------~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~~~ 940 (1156)
++++|++.+ ++|+++||+||||||||||+++|+|.....+..|.|.+ +|...... .+
T Consensus 50 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~~ 128 (308)
T 1sq5_A 50 LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-VL 128 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-HH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-HH
Confidence 577888877 89999999999999999999999995321023688888 88775432 23
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHHHHHhh
Q 001108 941 RISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (1156)
Q Consensus 941 ~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr 969 (1156)
+.+|++ |...+++.+|+.+++.+...++
T Consensus 129 ~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 129 KERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 447888 7777778899999998876554
No 268
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.65 E-value=2.4e-09 Score=120.07 Aligned_cols=72 Identities=18% Similarity=0.264 Sum_probs=44.0
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEE---cCccCCCcCc-cce-EEEEcCCCCCCC----CCCH
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY---NGHDMDEFVP-QRT-AAYISQHDNHIG----EMTV 243 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---nG~~~~~~~~-~~~-~~yv~Q~d~~~~----~lTV 243 (1156)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|...+.... .+. .+|+.|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 345689999999999999999999999999887 899998 8876654321 122 799999986654 6899
Q ss_pred HHHHH
Q 001108 244 RETLA 248 (1156)
Q Consensus 244 ~E~l~ 248 (1156)
|+|.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 9883
No 269
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.64 E-value=2.3e-08 Score=119.30 Aligned_cols=178 Identities=13% Similarity=0.137 Sum_probs=107.0
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEE-EEEEcCccCChhc-ccceEEEeccCCCCCCCCCHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQET-FARISGYCEQNDIHSPFVTIYE 960 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~-~~~~~gyv~q~~~~~~~~Tv~e 960 (1156)
.|+++++-+++|+++.|.|++|+|||||+..+++.... ..| .+.+.+....... ..|..+.... ... +
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~-~ 261 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA-Q 261 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-H
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-H
Confidence 57888888999999999999999999999999874320 012 2222222221111 1110000000 000 0
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCC
Q 001108 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGL 1038 (1156)
Q Consensus 961 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~--~~p~illLDEPTsgL 1038 (1156)
. ++. .....++ ...+.++++.++..++.-.. ..++|.+|.+ ..++.++ .+|+++++|+++.-.
T Consensus 262 ~------l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 262 N------LRT-GKLTPED-WGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp H------HHT-SCCCHHH-HHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred H------Hhc-CCCCHHH-HHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 0 111 1122222 33455566666544432211 1358999886 5667776 689999999999877
Q ss_pred CH--------HHHHHHHHHHHHHHhC-CCEEEEEec---------C--CcH-------HHHHhcCeEEEEecCc
Q 001108 1039 DA--------RAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PSI-------DIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1039 D~--------~~~~~i~~~l~~~~~~-g~tvi~~~H---------~--~~~-------~i~~~~d~v~~l~~Gg 1085 (1156)
++ .....+.+.|+.++++ |++||+++| + |.. .+...+|.+++|.++.
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 42 3346777888888754 999999999 2 431 3566799999998753
No 270
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.64 E-value=1.9e-11 Score=136.03 Aligned_cols=141 Identities=16% Similarity=0.148 Sum_probs=91.9
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh---cccceEEEeccCC-CCCCCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQND-IHSPFVT 957 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~-~~~~~~T 957 (1156)
.+++++++.+++| ++|+||||+|||||+++|+|... .+.+.++|.++... ...+.+++++|.. ...|.++
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~ 107 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVI 107 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeE
Confidence 4789999999999 99999999999999999999654 26789998765321 1223456677653 3445555
Q ss_pred HHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-
Q 001108 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS- 1036 (1156)
Q Consensus 958 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTs- 1036 (1156)
+.|++.+.+..+.. . ... .+....+... ..|||||+||+.|++++..+|++| |||+.
T Consensus 108 ~~Deid~~~~~r~~-----~----~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r 165 (274)
T 2x8a_A 108 FFDEVDALCPRRSD-----R----ETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAILR 165 (274)
T ss_dssp EEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHHS
T ss_pred eeehhhhhhcccCC-----C----cch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhcC
Confidence 55555432211100 0 000 0112222221 359999999999999999999975 99864
Q ss_pred -----------CCCHHHHHHHHHHH
Q 001108 1037 -----------GLDARAAAIVMRTV 1050 (1156)
Q Consensus 1037 -----------gLD~~~~~~i~~~l 1050 (1156)
-.|...+..|++.+
T Consensus 166 ~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 166 PGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp TTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred cccCCeEEEeCCcCHHHHHHHHHHH
Confidence 23666666666544
No 271
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.61 E-value=2e-09 Score=121.82 Aligned_cols=74 Identities=14% Similarity=0.190 Sum_probs=60.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEE---cCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHH
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTY---NGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFS 250 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~---nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 250 (1156)
++|++++|+||||||||||+++|+|.+. |+ +|+|.+ +|..... ...+.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 7899999999999999999999999987 77 899999 8876432 123457888 777778899999999887
Q ss_pred hhhc
Q 001108 251 ARCQ 254 (1156)
Q Consensus 251 ~~~~ 254 (1156)
..+.
T Consensus 153 ~~l~ 156 (308)
T 1sq5_A 153 SDLK 156 (308)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6543
No 272
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.60 E-value=1.9e-10 Score=131.84 Aligned_cols=149 Identities=15% Similarity=0.076 Sum_probs=90.1
Q ss_pred EEeeeeeEEEeCC-------eEEEEEcCCCCcHHHHHhhhcCCCCC--CeEEEEEEEcCccCCh---hcccceEEEeccC
Q 001108 882 VLLNGVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGYPKKQ---ETFARISGYCEQN 949 (1156)
Q Consensus 882 ~~L~~vs~~i~~G-------e~~al~G~nGaGKTTLl~~L~g~~~~--~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~ 949 (1156)
.+++++++.+++| +.++|+||||+|||||+++|+|.... .+.+|.+..++.+... ....+.++|+.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 4678888888876 78999999999999999999985411 1334544444333211 1123468999998
Q ss_pred CCCCCCCCHHHHHHHHHHhhCCCCC--ChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001108 950 DIHSPFVTIYESLLFSAWLRLSPEV--DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1027 (1156)
Q Consensus 950 ~~~~~~~Tv~e~l~~~~~lr~~~~~--~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~ 1027 (1156)
+.+.+ ++.|++....... ..+. ......+.+.+.++.+++.. ..+. +..||+|+|||+.++
T Consensus 112 ~~l~~--~~~e~L~~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~-------- 174 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII-------- 174 (334)
T ss_dssp GGCCH--HHHHHHHHHHHTS-CCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE--------
T ss_pred hhcCH--HHHHHHHHHHHhc-ccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce--------
Confidence 77665 7888875332211 1110 01111223444444455543 3333 246999999998655
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001108 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVD 1055 (1156)
Q Consensus 1028 illLDEPTsgLD~~~~~~i~~~l~~~~~ 1055 (1156)
.+||+.+...+.++|++.++
T Consensus 175 --------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 --------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp --------EECCCCCHHHHHHHHHHHHH
T ss_pred --------eeCCCCCHHHHHHHHHHHHH
Confidence 77888888889999888764
No 273
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.59 E-value=6.3e-09 Score=117.25 Aligned_cols=101 Identities=15% Similarity=0.221 Sum_probs=64.7
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEE---cCccCChhc--c-cceEEEeccCCC------------
Q 001108 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQET--F-ARISGYCEQNDI------------ 951 (1156)
Q Consensus 890 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~--~-~~~~gyv~q~~~------------ 951 (1156)
.+.+|++++|+||||||||||+|+|+|... +..|+|.+ +|.+..... + .+.+||++|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 345799999999999999999999999876 46899999 887654311 1 134799999975
Q ss_pred ----CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccc
Q 001108 952 ----HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSL 999 (1156)
Q Consensus 952 ----~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~ 999 (1156)
++|.+|+ ||+.|.. .... .+....+.++++.++|. +..+..
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~~~-----~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CNHV-----DEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CCSS-----SCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCC-CcCC-----CCCCcHHHHHHHcCCCCHHHHHHH
Confidence 4678888 8888752 1111 12234588999999995 554544
No 274
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.59 E-value=1.5e-08 Score=114.03 Aligned_cols=112 Identities=18% Similarity=0.199 Sum_probs=73.2
Q ss_pred eeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHH
Q 001108 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (1156)
Q Consensus 887 vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~ 966 (1156)
+++..++|++++|+|+||+||||++..|++... ...|.|.+.+.+.... ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~-------------------~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA-------------------AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH-------------------HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccccH-------------------HHHHH-----
Confidence 455567899999999999999999999998643 1234566554432110 00111
Q ss_pred HhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH---HHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 001108 967 WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 1043 (1156)
Q Consensus 967 ~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl---~iA~aL~~~p~illLDEPTsgLD~~~~ 1043 (1156)
+....+.+++.- ....|+|+.+++ +|++++..+|+++|+|||.. ....
T Consensus 151 ----------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 151 ----------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ----------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ----------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 122334445432 124689999999 89999999999999999974 2334
Q ss_pred HHHHHHHHHH
Q 001108 1044 AIVMRTVRNT 1053 (1156)
Q Consensus 1044 ~~i~~~l~~~ 1053 (1156)
..+++.++++
T Consensus 202 ~~l~~eL~~l 211 (306)
T 1vma_A 202 KNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455544443
No 275
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.59 E-value=9.1e-09 Score=121.91 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=48.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~ 221 (1156)
.+|+|+|+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++..
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 479999999999 999999999999999999999999998 9999999988754
No 276
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.58 E-value=1.3e-07 Score=102.69 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=46.6
Q ss_pred HHHHHHHh--cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHH-HhCCCEEEEEecCCcHH-------HHHhcCeEEEEec
Q 001108 1016 LTIAVELV--ANPSIIFMDEPTSGL--DARAAAIVMRTVRNT-VDTGRTVVCTIHQPSID-------IFEAFDELFLMKR 1083 (1156)
Q Consensus 1016 l~iA~aL~--~~p~illLDEPTsgL--D~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~-------i~~~~d~v~~l~~ 1083 (1156)
+..++.++ .+|+++++|+|++.+ |+.....++..+.++ .+.|+|||+++|..... +...+|.++.|.+
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344444 579999999999988 554444444555554 46699999999986521 3567899999975
No 277
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.56 E-value=3.1e-08 Score=111.40 Aligned_cols=112 Identities=20% Similarity=0.210 Sum_probs=78.1
Q ss_pred eeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHH
Q 001108 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFS 250 (1156)
Q Consensus 171 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 250 (1156)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. +. ...|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r~--------------~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----RA--------------AAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----CH--------------HHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----cH--------------HHHHHH---
Confidence 45556899999999999999999999999998765 677877654321 00 000111
Q ss_pred hhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHH
Q 001108 251 ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330 (1156)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrq 330 (1156)
..+++.+|++. ....|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~----------~~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV----------ISHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE----------ECCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE----------EecCCccCHH
Confidence 11233445542 1247899999
Q ss_pred HH---HHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHH
Q 001108 331 RV---TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 369 (1156)
Q Consensus 331 Rv---sia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~ 369 (1156)
++ ++++++..+|+++|+|+|.. ......+++.|+.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l 211 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence 99 89999999999999999974 34455666666554
No 278
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.54 E-value=1.4e-07 Score=105.75 Aligned_cols=127 Identities=18% Similarity=0.072 Sum_probs=84.1
Q ss_pred eeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHH
Q 001108 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLF 964 (1156)
Q Consensus 885 ~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~ 964 (1156)
++++++ +|++++|+|+||+||||++..|++... ...|.|.+.+.+...... + +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~~------------------~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPAA------------------R-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHHH------------------H-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHhH------------------H-HHH--
Confidence 678887 899999999999999999999998643 123567776655321100 0 000
Q ss_pred HHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHH
Q 001108 965 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 1043 (1156)
Q Consensus 965 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEP-TsgLD~~~~ 1043 (1156)
..+.+..++.-+.. + ....-.+.+|.+|+.+...+++++|+||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01123334432211 0 11244456788999988899999999999 999999888
Q ss_pred HHHHHHHHHHHhCCCEEEEE
Q 001108 1044 AIVMRTVRNTVDTGRTVVCT 1063 (1156)
Q Consensus 1044 ~~i~~~l~~~~~~g~tvi~~ 1063 (1156)
..+.+..+.+. ...+++++
T Consensus 200 ~~l~~~~~~~~-~~~~~lv~ 218 (295)
T 1ls1_A 200 GELARLKEVLG-PDEVLLVL 218 (295)
T ss_dssp HHHHHHHHHHC-CSEEEEEE
T ss_pred HHHHHHhhhcC-CCEEEEEE
Confidence 88888777653 34455444
No 279
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.52 E-value=1.1e-07 Score=106.66 Aligned_cols=142 Identities=15% Similarity=0.161 Sum_probs=86.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQG 255 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 255 (1156)
++|++++|+|||||||||++..|++.+.+. +| +.+.++.++.. ..+..|.+...++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 479999999999999999999999998754 45 23566666431 3455555543211
Q ss_pred CCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHH
Q 001108 256 VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335 (1156)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia 335 (1156)
.+|++.. . ..+ ++.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~----~------~~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLE----V------CYT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCC----B------CSS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeE----e------cCC-HHHHHHHHH
Confidence 1222210 0 012 233355555
Q ss_pred HHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHh--cCCeEEEE-EecChhhHHhhcCeEEEEcCCeEEEE
Q 001108 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI--NSGTAVIS-LLQPAPETYDLFDDIILLSDGQIVYQ 406 (1156)
Q Consensus 336 ~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~--~~~t~ii~-i~q~~~~~~~~~D~iilL~~G~iv~~ 406 (1156)
+ +.+++++|+| |+|+|+.....+.+.. ++... ...++++. .+|...++.+.+|++..+..+.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~-~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELK-ETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHH-HHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHH-HHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 9999987665444433 33210 11222222 36666778888887766777777764
No 280
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.49 E-value=2.5e-07 Score=106.06 Aligned_cols=78 Identities=19% Similarity=0.186 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCcH-----
Q 001108 1014 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVRNT----VDTGRTVVCTIHQPSI----- 1069 (1156)
Q Consensus 1014 qrl~iA~aL~~~--p~illLDEPTsgL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~~H~~~~----- 1069 (1156)
+-+.++++++.+ |++|++|||++.+ |+ ..++.+.+.++++ .+.|+|||+++|..+.
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 346678888765 9999999999998 33 1222344444444 3559999999996431
Q ss_pred ----------HHHHhcCeEEEEecCcEEEEecC
Q 001108 1070 ----------DIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1070 ----------~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
.+...+|.++.+.++ +.+..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~-~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRI-ETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEE-EEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEe-eeeecCc
Confidence 134578888888763 4433343
No 281
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.48 E-value=5.6e-09 Score=129.06 Aligned_cols=174 Identities=20% Similarity=0.204 Sum_probs=99.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
..+++++++.+++|+.++|+||||+|||||+++|++.+++. .-|.+.+++.+.+... ..++|++|... -.+.
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~----~~~~ 118 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQG----RRIV 118 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHH----HHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchH----HHHH
Confidence 34789999999999999999999999999999999999875 2388999888766543 45889887420 0011
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHh-------cCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKA-------AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
|.....+... ...+ +........... ....+.+-+. ... ...-+.+|.-....
T Consensus 119 e~~~~~~~~~-~~~r-~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-------~~~-------~~~~~L~G~~~~~~---- 178 (604)
T 3k1j_A 119 EKYREKAKSQ-ESVK-SSNMRLKSTVLVPKLLVDNCGRTKAPFID-------ATG-------AHAGALLGDVRHDP---- 178 (604)
T ss_dssp HHHHHHHHHH-TCC------------CCCEEEECCTTCSSCCEEE-------CTT-------CCHHHHHCEECCCC----
T ss_pred HHHHHhhccc-hhhh-hhcccccccccccceeeccccCCCCCEEE-------cCC-------CCHHhcCceEEech----
Confidence 1111100000 0000 000000000000 0000000000 000 00011222111111
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~ 368 (1156)
....++|+|++|++..+.....++.+|||||+.. |++.....+.+.|.+
T Consensus 179 -~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 179 -FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp -C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred -hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 1124699999999999999999999999999998 898887777777753
No 282
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.47 E-value=7.3e-08 Score=108.05 Aligned_cols=141 Identities=16% Similarity=0.128 Sum_probs=82.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~ 971 (1156)
++|++++|+|+||+||||++..|++.... ..| +.+.++.++.. ..++.|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~---- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYAE---- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHHT----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHHH----
Confidence 47899999999999999999999985421 112 12455555542 2345555543221
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001108 972 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051 (1156)
Q Consensus 972 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~ 1051 (1156)
..++... ...+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 159 -----------------~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 159 -----------------LLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp -----------------TTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred -----------------hcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 1122110 01222 23344555 45999999999 99999877665555444
Q ss_pred HHH---hCCCEEEE-EecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1052 NTV---DTGRTVVC-TIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1052 ~~~---~~g~tvi~-~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
-+. ..+.++|+ ++|... ++.+.++++..+..+| ++..
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~g-iVlt 247 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQ-YIFT 247 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCE-EEEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCE-EEEe
Confidence 332 12334444 378754 5666677665555544 4444
No 283
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.46 E-value=5e-07 Score=97.97 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=42.4
Q ss_pred cCCccceeecCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh--------HHhhcCeEEEEcC
Q 001108 340 GPALALFMDEISTGL--DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE--------TYDLFDDIILLSD 400 (1156)
Q Consensus 340 ~~p~vllLDEptsgL--D~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~--------~~~~~D~iilL~~ 400 (1156)
.+|+++++|+|++.+ |.....+++..|.+.++..+.++++ ++|...+ +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~-~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIF-VSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEE-EEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEE-EecCCCCcccccccccceeEEEEEEEEE
Confidence 479999999999988 6655566777777766655555555 5555444 5678899999964
No 284
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.44 E-value=2.1e-08 Score=104.88 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~ 1053 (1156)
+...+|++|+.+|+++++| ||++|......+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4577899999999999999 9999999999999888753
No 285
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.42 E-value=1.1e-08 Score=108.17 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=46.3
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCCCCCHHHHH
Q 001108 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMTVRETL 247 (1156)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1156)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++....... ....++|++|++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56788999999999999999999999999863 2445554433221 134578999976555555554443
No 286
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.38 E-value=2e-08 Score=119.76 Aligned_cols=166 Identities=11% Similarity=0.057 Sum_probs=92.3
Q ss_pred eeeEEEeCCeEEEEEcCCCCcHHHHHhhhcC--CCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCC-CCC-CHHHH
Q 001108 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS-PFV-TIYES 961 (1156)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~-~~~-Tv~e~ 961 (1156)
.+++++..+..+.|.|++||||||+++.|.. .... ..+++.+.+.+.+...+... ..-+.+. +-. .+.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~el~~~----~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLELSVY----EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSGGGGG----TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhhhhhh----ccCCcccceeecCHHHH
Confidence 3667788899999999999999999999865 1211 12344444444332111110 0001111 001 12222
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH----------HHHHHHhcCCC-EEE
Q 001108 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL----------TIAVELVANPS-IIF 1030 (1156)
Q Consensus 962 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl----------~iA~aL~~~p~-ill 1030 (1156)
...-.++. ++.+++ .+.++..++.++.+..-.. ...+|+||+|+. ++|+++...|. +++
T Consensus 233 ~~~L~~~~-------~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 233 ANALRWCV-------NEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHHH-------HHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHHH-------HHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 22111111 233333 3678888877654321000 013678877652 35566677898 789
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEecCCc
Q 001108 1031 MDEPTSGLDARAAAIVMRTVRNTVD----TGRTVVCTIHQPS 1068 (1156)
Q Consensus 1031 LDEPTsgLD~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~ 1068 (1156)
+||++.-+|.. ...+.+.+.++++ .|.++|++||+|+
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999988843 3445555555543 3779999999998
No 287
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.38 E-value=3.3e-07 Score=109.25 Aligned_cols=183 Identities=15% Similarity=0.131 Sum_probs=106.8
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCH
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1156)
....|+++.+-+++|+++.|.|+||+|||||+..+++...+. .| ..+.|++-+ ++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CCH
Confidence 345789999899999999999999999999999999876432 22 124454432 333
Q ss_pred HHHHHHH-hhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 244 RETLAFS-ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 244 ~E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
.+...-. +...+... ..+ . .+... .+ +. ..+...++.++.... .+-+ ..
T Consensus 245 ~~l~~r~~~~~~~~~~-----~~l----~-~g~l~---~~-----------~~-~~~~~a~~~l~~~~l---~i~d--~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNINA-----QNL----R-TGKLT---PE-----------DW-GKLTMAMGSLSNAGI---YIDD--TP 294 (454)
T ss_dssp HHHHHHHHHHHHTCCH-----HHH----H-TSCCC---HH-----------HH-HHHHHHHHHHHSSCE---EEEC--CT
T ss_pred HHHHHHHHHHHcCCCH-----HHH----h-cCCCC---HH-----------HH-HHHHHHHHHHhcCCE---EEEC--CC
Confidence 3322110 00001100 000 0 00000 00 00 112223333332221 1111 23
Q ss_pred CCChhHHHHHHHHHHHh--cCCccceeecCCCCCCH--------HHHHHHHHHHHHHHHhcCCeEEEEEec---------
Q 001108 323 GISGGQKKRVTTGEMMV--GPALALFMDEISTGLDS--------STTFQIVNCLRQNIHINSGTAVISLLQ--------- 383 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~--~~p~vllLDEptsgLD~--------~~~~~i~~~L~~~~~~~~~t~ii~i~q--------- 383 (1156)
++|++|.+ +.++.++ .+|+++++|+++...++ .....+.+.|+.+++..+.++| .++|
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi-~~sql~r~~e~~~ 371 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVI-ALSQLSRSVEQRQ 371 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEE-EEECCCTTSTTC-
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEE-EEecCCcccccCC
Confidence 68999886 5566665 67999999999997742 2346677888888876555554 4666
Q ss_pred ---Ch-------hhHHhhcCeEEEEcCCeE
Q 001108 384 ---PA-------PETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 384 ---~~-------~~~~~~~D~iilL~~G~i 403 (1156)
|. ..+.+.+|.|++|..++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 21 157788999999987654
No 288
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.36 E-value=6.7e-08 Score=101.06 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=35.6
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~ 368 (1156)
|..-..+.+.+|++++.+|+++++| ||++|.....++++.|.+
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3333344578899999999999999 999999999999988865
No 289
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.35 E-value=9.3e-10 Score=122.61 Aligned_cols=76 Identities=25% Similarity=0.381 Sum_probs=54.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCC-CCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1156)
.+++++++.+++| ++|+||||+|||||+++|++.+. .|.|.++|.++..... .+.+++++|.. ...+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 4789999999999 99999999999999999999875 6899998876432111 12345555542 234455
Q ss_pred CHHHHHH
Q 001108 242 TVRETLA 248 (1156)
Q Consensus 242 TV~E~l~ 248 (1156)
++.|++.
T Consensus 136 ~~iDeid 142 (278)
T 1iy2_A 136 VFIDEID 142 (278)
T ss_dssp EEEETHH
T ss_pred EehhhhH
Confidence 6666653
No 290
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.35 E-value=7.7e-07 Score=99.72 Aligned_cols=117 Identities=18% Similarity=0.080 Sum_probs=80.1
Q ss_pred eceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHH
Q 001108 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248 (1156)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1156)
+++++. +|++++++|+||+||||++..|++.+.+. .|+|.+.+.+.... .++ +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~------------------~~~-~ql~ 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRP------------------AAR-EQLR 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCH------------------HHH-HHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccH------------------hHH-HHHH
Confidence 678888 99999999999999999999999998765 68888876543110 000 0000
Q ss_pred HHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 001108 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1156)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1156)
.+.+..|++.... +. +-.-.+
T Consensus 147 ----------------------------------------------------~~~~~~~l~~~~~---~~----~~~p~~ 167 (295)
T 1ls1_A 147 ----------------------------------------------------LLGEKVGVPVLEV---MD----GESPES 167 (295)
T ss_dssp ----------------------------------------------------HHHHHHTCCEEEC---CT----TCCHHH
T ss_pred ----------------------------------------------------HhcccCCeEEEEc---CC----CCCHHH
Confidence 0112234432210 00 123335
Q ss_pred HHHHHHHHHHhcCCccceeecC-CCCCCHHHHHHHHHHHHH
Q 001108 329 KKRVTTGEMMVGPALALFMDEI-STGLDSSTTFQIVNCLRQ 368 (1156)
Q Consensus 329 rqRvsia~al~~~p~vllLDEp-tsgLD~~~~~~i~~~L~~ 368 (1156)
-+|.+++++...+++++|+||| ++++|......+.+..+.
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhh
Confidence 5688899988899999999999 999998887777776654
No 291
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.32 E-value=6.2e-08 Score=114.79 Aligned_cols=50 Identities=20% Similarity=0.122 Sum_probs=44.6
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.+|++||++|++ +++||+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 67 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTE 67 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 369999999999 9999999999999999999999765 4578899998765
No 292
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.32 E-value=5.1e-10 Score=124.70 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=78.9
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh---cccceEEEeccCCC-CCCCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI-HSPFVT 957 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~-~~~~~T 957 (1156)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+.... ...+.+++++|... ..+.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 4689999999999 89999999999999999998653 46788887543211 11223556666543 455677
Q ss_pred HHHHHHHHHHhhCCC-CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001108 958 IYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028 (1156)
Q Consensus 958 v~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~i 1028 (1156)
+.|++......+... ....++..+.+.+++. .|||||+||+.|++++..+|++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHHH------------------HHTTCCTTCCEEEEEEESCTTS
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEecCCchh
Confidence 777774332211100 0011122222333321 3799999999999999999986
No 293
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.31 E-value=1.5e-09 Score=119.07 Aligned_cols=75 Identities=25% Similarity=0.387 Sum_probs=53.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCC-CCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1156)
.+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++..... .+.+++++|.. ...+.+
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 4789999999999 99999999999999999999875 6889998866422111 12344555542 234455
Q ss_pred CHHHHH
Q 001108 242 TVRETL 247 (1156)
Q Consensus 242 TV~E~l 247 (1156)
++.+++
T Consensus 112 ~~~Dei 117 (254)
T 1ixz_A 112 VFIDEI 117 (254)
T ss_dssp EEEETH
T ss_pred EEehhh
Confidence 555555
No 294
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.31 E-value=2.1e-08 Score=105.90 Aligned_cols=60 Identities=25% Similarity=0.193 Sum_probs=39.1
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh---hcccceEEEeccCCCCC
Q 001108 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHS 953 (1156)
Q Consensus 888 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~ 953 (1156)
|+++++|++++|+||||||||||+++|+|... .+.+++..... ....+.++|++|++..+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRF 63 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHH
Confidence 56788999999999999999999999999642 23444433221 11234568888865433
No 295
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.30 E-value=8.7e-08 Score=114.34 Aligned_cols=166 Identities=11% Similarity=0.035 Sum_probs=88.3
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhc--CCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCC--CHHH
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAG--KLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM--TVRE 245 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G--~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E 245 (1156)
.+++.+..+..++|.|++||||||+|++|.. .+..+ .|+|.+.+.+.+.... +.-..+|++ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~el--------~~~~~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLEL--------SVYEGIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSGG--------GGGTTCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhhh--------hhhccCCcccceeec
Confidence 3677888899999999999999999999875 23332 4666665544332111 000111221 2222
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc--cccccccCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT--MVGDEMIRG 323 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt--~vg~~~~~~ 323 (1156)
+...+.+.. .....++. .+ ..+++..|+.+..+- .+. ..
T Consensus 228 d~~~a~~~L-----~~~~~Eme-----------------------------rR-~~ll~~~Gv~~i~~yn~~~~----~~ 268 (512)
T 2ius_A 228 DMKDAANAL-----RWCVNEME-----------------------------RR-YKLMSALGVRNLAGYNEKIA----EA 268 (512)
T ss_dssp SHHHHHHHH-----HHHHHHHH-----------------------------HH-HHHHHHTTCSSHHHHHHHHH----HH
T ss_pred CHHHHHHHH-----HHHHHHHH-----------------------------HH-HHHHHHcCCccHHHHHHHHH----HH
Confidence 222221110 00011111 11 245666676543221 111 24
Q ss_pred CChhHHHHH----------HHHHHHhcCCc-cceeecCCCCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEecChh
Q 001108 324 ISGGQKKRV----------TTGEMMVGPAL-ALFMDEISTGLDSSTTFQIVNCLRQNIHINS--GTAVISLLQPAP 386 (1156)
Q Consensus 324 LSGGqrqRv----------sia~al~~~p~-vllLDEptsgLD~~~~~~i~~~L~~~~~~~~--~t~ii~i~q~~~ 386 (1156)
+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.|.++++..+ +..+|..+|...
T Consensus 269 ~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 269 DRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 789998763 24555667787 78999999988843 3445555655544332 334444455433
No 296
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.28 E-value=7.3e-10 Score=121.62 Aligned_cols=128 Identities=18% Similarity=0.215 Sum_probs=81.1
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh---cccceEEEeccCCC-CCCCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI-HSPFVT 957 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~-~~~~~T 957 (1156)
.+++++++.+++| +.|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|... ..+.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 4688999999999 89999999999999999998653 46778887543211 11223456666542 445667
Q ss_pred HHHHHHHHHHhhCCC-CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001108 958 IYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035 (1156)
Q Consensus 958 v~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPT 1035 (1156)
+.|++......+... ....++..+.+.+++. .|||||+||+.|++++..+|++ ||++.
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 777774332221110 0011222233333332 3789999999999999999986 56654
No 297
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.26 E-value=1.2e-08 Score=126.20 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=97.3
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCC--------
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI-------- 951 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~-------- 951 (1156)
...+++++++.+++|+.+.|+||||+|||||+++|++.... ...|.+.+.+.+... ....++||++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT-ETLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC-SSCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc-ccCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHH
Confidence 34578999999999999999999999999999999997643 223788888866542 3345788876421
Q ss_pred --------------CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 001108 952 --------------HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLT 1017 (1156)
Q Consensus 952 --------------~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ 1017 (1156)
.+..+++.+|+.....-...... .... .....+.++..+..... ..++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~-v~~~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPF-IDAT---GAHAGALLGDVRHDPFQ-----SGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCE-EECT---TCCHHHHHCEECCCCC---------CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCE-EEcC---CCCHHhcCceEEechhh-----cCCcccccccccc
Confidence 01111111111100000000000 0000 00011112211111111 1369999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001108 1018 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052 (1156)
Q Consensus 1018 iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~ 1052 (1156)
.++...+++.+|||||... |++.....+.+.|.+
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 899999988888875
No 298
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.24 E-value=9.5e-07 Score=101.28 Aligned_cols=31 Identities=39% Similarity=0.578 Sum_probs=27.1
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+-+++|+++.|.||||||||||+..++....
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999888886543
No 299
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.24 E-value=7e-07 Score=102.11 Aligned_cols=42 Identities=31% Similarity=0.428 Sum_probs=33.7
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEE-EEcCc
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV-TYNGH 217 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V-~~nG~ 217 (1156)
+-+++|+++.|.||||||||||+..+++...+. .|.| .+++.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E 98 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAE 98 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecc
Confidence 468999999999999999999999999886543 4554 44443
No 300
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.22 E-value=2.8e-07 Score=99.40 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=23.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHh-cCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALA-GKLDP 204 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~-G~~~~ 204 (1156)
.+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 34789999999999999999999999999999999 99753
No 301
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.18 E-value=4.3e-08 Score=105.24 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=40.7
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-----------ccceEEEEcCC
Q 001108 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-----------PQRTAAYISQH 234 (1156)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-----------~~~~~~yv~Q~ 234 (1156)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .+..++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 899999999999999999999999998 899999998763211 13568888883
No 302
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.15 E-value=3.6e-07 Score=95.97 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001108 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054 (1156)
Q Consensus 1016 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~ 1054 (1156)
...|++|+.+|+++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999988887654
No 303
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.05 E-value=2.9e-06 Score=100.81 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCc
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPS 1068 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEP----------TsgLD~~~~~~i~~~l~~~~----~~g~tvi~~~H~~~ 1068 (1156)
+++++|-.++.|....|.|||+||+ ++|.|......+.+++..+- ..+..||++||+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888899999999999999999 44777777777777776653 34778999999985
No 304
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.05 E-value=1.1e-06 Score=94.87 Aligned_cols=38 Identities=32% Similarity=0.253 Sum_probs=22.9
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhc-CCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKT 919 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~-g~~~ 919 (1156)
+..+++||++++|++++|+||||||||||+++|+ |...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4689999999999999999999999999999999 8753
No 305
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.05 E-value=2e-07 Score=98.28 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=48.5
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCHHHHHHH
Q 001108 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTVRETLAF 249 (1156)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f 249 (1156)
.+..++|++++|+||||||||||+++|++.+ |.+.++|.++.... .+...++++|+....+.+++.+++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 3566799999999999999999999999975 78889987764321 11245788886554555556555543
No 306
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.01 E-value=3.1e-06 Score=97.63 Aligned_cols=157 Identities=15% Similarity=0.055 Sum_probs=86.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC--------CCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH---HHH
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLDPT--------LKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE---TLA 248 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~--------~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E---~l~ 248 (1156)
.++|+|+||||||||++.|+|..... -..+|.|.++|.++. .-.+.|++.|.+ ...|.. ++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHHHHHHHHH
Confidence 49999999999999999999986421 023799999886531 123455555422 111211 111
Q ss_pred HHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 001108 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1156)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1156)
........-. ..+. .+++ .. ..+....+..+++.+++.+..--.|+++ ..-+|+|+
T Consensus 254 ~~~~aD~il~-------------VvD~-s~~~-~~--------~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~ 309 (364)
T 2qtf_A 254 EAKYSDALIL-------------VIDS-TFSE-NL--------LIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDL 309 (364)
T ss_dssp GGGGSSEEEE-------------EEET-TSCH-HH--------HHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCH
T ss_pred HHHhCCEEEE-------------EEEC-CCCc-ch--------HHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchH
Confidence 0000000000 0000 0000 00 0011123456677777765543445554 33478888
Q ss_pred HHHHHHH----HHH-hcCCccceeecCCCCCCHHHHHHHHHHHHHHHH
Q 001108 329 KKRVTTG----EMM-VGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371 (1156)
Q Consensus 329 rqRvsia----~al-~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~ 371 (1156)
++|+.++ +.+ ..+|++ +|+|++|......+++.|.+...
T Consensus 310 ~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 310 YKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 8988877 554 333443 89999999999999998877554
No 307
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.99 E-value=1.3e-06 Score=99.89 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=26.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+-+++|+++.|.||+|+|||||+..+++.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999999999864
No 308
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.97 E-value=5.5e-07 Score=103.90 Aligned_cols=147 Identities=13% Similarity=0.137 Sum_probs=84.0
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCCCC---------CeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHH-
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRKTG---------GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFS- 965 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~- 965 (1156)
.++|+|++|||||||++.|+|.... ++..|.+.++|.+. .+....|++.+.+. ..| |...-.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~~lp~----~lv-e~f~~tl 252 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIRGIPP----QIV-DAFFVTL 252 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCSSCCG----GGH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchhcCCH----HHH-HHHHHHH
Confidence 4999999999999999999996421 13568888888542 12223455443221 111 111000
Q ss_pred HHhhC---------CCCCC--hHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH----HHH-hcCCCEE
Q 001108 966 AWLRL---------SPEVD--SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA----VEL-VANPSII 1029 (1156)
Q Consensus 966 ~~lr~---------~~~~~--~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA----~aL-~~~p~il 1029 (1156)
..++. ..+.. ..+..+.+.++++.+++.+..--.+... +..+|+++++|+.++ +++ ..+|++
T Consensus 253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 00110 01111 1222334567777777654331111111 234688888888877 555 434454
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001108 1030 FMDEPTSGLDARAAAIVMRTVRNTVD 1055 (1156)
Q Consensus 1030 lLDEPTsgLD~~~~~~i~~~l~~~~~ 1055 (1156)
+|||++|......+++.|.+...
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999887653
No 309
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.93 E-value=4.5e-06 Score=87.47 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHH
Q 001108 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 370 (1156)
Q Consensus 332 vsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~ 370 (1156)
...|++++..|.++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998876543
No 310
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.93 E-value=1.3e-05 Score=95.36 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCC----------CCCCHHHHHHHHHHHHHHHH--hcCCeEEEEEecChh
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEIS----------TGLDSSTTFQIVNCLRQNIH--INSGTAVISLLQPAP 386 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEpt----------sgLD~~~~~~i~~~L~~~~~--~~~~t~ii~i~q~~~ 386 (1156)
|+++.|..++++....|.|||+||+- .|.|......+.+.|..+-. ...+.+||..++...
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 56788888899988999999999993 46666555445555544321 123566676666643
No 311
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.91 E-value=4.2e-07 Score=95.76 Aligned_cols=55 Identities=24% Similarity=0.178 Sum_probs=37.1
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh--cccceEEEeccC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE--TFARISGYCEQN 949 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~q~ 949 (1156)
...++|++++|+||||||||||+++|++.. |.+.++|.+.... ..+...|+++|+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 456789999999999999999999999743 6678887654321 111234666664
No 312
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.90 E-value=2.4e-07 Score=99.46 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=38.8
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-----------hcccceEEEeccC
Q 001108 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-----------ETFARISGYCEQN 949 (1156)
Q Consensus 888 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~q~ 949 (1156)
+++|.+ ++++|+|||||||||||++|+|... +..|.|.++|.+... ...+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456667 8999999999999999999999754 346788888866411 1124568899874
No 313
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.89 E-value=2e-05 Score=90.86 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQPS 1068 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLD-EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~--H~~~ 1068 (1156)
..+|++++|++. +.+...++-++++| +|++|+|......+++.++.... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 358999998876 55555677788999 99999999998888888777643 77888888 7753
No 314
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.88 E-value=4.4e-06 Score=86.29 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=33.0
Q ss_pred eceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 001108 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (1156)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1156)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6889999999 99999999999999999999987654
No 315
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.87 E-value=5.4e-06 Score=104.90 Aligned_cols=75 Identities=12% Similarity=0.121 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCcHHHHHhcCeEEEE
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~-~H~~~~~i~~~~d~v~~l 1081 (1156)
.-+|.|+.+|..++..++.++++|++|||.. +||......+++.+.......++|+++ ||++. .+.+.+++..++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi 265 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLL 265 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEE
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcc
Confidence 3479999999999999999999999999996 999887776666666554456778886 88765 466677643333
No 316
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.86 E-value=2.3e-06 Score=96.82 Aligned_cols=81 Identities=15% Similarity=0.018 Sum_probs=61.4
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-------c-----cceEEEE-cC
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------P-----QRTAAYI-SQ 233 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-------~-----~~~~~yv-~Q 233 (1156)
+++++++.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998776 789999877653211 1 3458889 77
Q ss_pred CCCCCCCCCHHHHHHHH
Q 001108 234 HDNHIGEMTVRETLAFS 250 (1156)
Q Consensus 234 ~d~~~~~lTV~E~l~f~ 250 (1156)
.....+..++.+++...
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65555555666666543
No 317
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.84 E-value=5.5e-06 Score=87.15 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=28.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1156)
+++++|++++|+||||||||||+++|++.+.|+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 357899999999999999999999999998654
No 318
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.82 E-value=6.9e-06 Score=93.25 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=80.7
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 962 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l 962 (1156)
-|+.+.+-+++|+++.|.|++|+|||||+.-++.... . .| ..+.|+.- .++..+-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a--~-------~g---------~~Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL--N-------DD---------RGVAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH--H-------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--H-------cC---------CeEEEEeC------CCCHHHHH
Confidence 3666667799999999999999999999988875321 0 11 11333221 23332221
Q ss_pred HHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 001108 963 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042 (1156)
Q Consensus 963 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~ 1042 (1156)
.++......+.+..+++ ..||.++.+|+..|...+.++++.+.|+|...+|
T Consensus 91 ------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~--- 141 (338)
T 4a1f_A 91 ------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE--- 141 (338)
T ss_dssp ------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH---
T ss_pred ------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH---
Confidence 11111222222222222 1499999999999999999999999999865433
Q ss_pred HHHHHHHHHHHHh-C-CCEEEEEec
Q 001108 1043 AAIVMRTVRNTVD-T-GRTVVCTIH 1065 (1156)
Q Consensus 1043 ~~~i~~~l~~~~~-~-g~tvi~~~H 1065 (1156)
.|...++++.+ . |..+|++-|
T Consensus 142 --~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 --QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHhcCCCCEEEEec
Confidence 55555666543 3 677877744
No 319
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.76 E-value=5.7e-06 Score=86.00 Aligned_cols=28 Identities=32% Similarity=0.525 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1156)
|++++|+||||||||||+++|+|.+++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 5789999999999999999999998743
No 320
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.74 E-value=8e-06 Score=85.83 Aligned_cols=40 Identities=28% Similarity=0.053 Sum_probs=25.1
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
....+++|||+.+++|++++|+|||||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3456999999999999999999999999999999999876
No 321
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.72 E-value=2.6e-05 Score=88.54 Aligned_cols=139 Identities=17% Similarity=0.158 Sum_probs=86.4
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCH
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1156)
...-|+.+.+-++||+++.|.|+||+|||||+.-++..... .| ..+.|++= +++.
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g---------~~Vl~fSl------Ems~ 86 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD---------RGVAVFSL------EMSA 86 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT---------CEEEEEES------SSCH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC---------CeEEEEeC------CCCH
Confidence 35568888888999999999999999999999988865431 11 13555443 3444
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
.+-..- +.... .+ +.+....+ ..
T Consensus 87 ~ql~~R----------------lls~~--~~-------------------------------v~~~~l~~--------g~ 109 (338)
T 4a1f_A 87 EQLALR----------------ALSDL--TS-------------------------------INMHDLES--------GR 109 (338)
T ss_dssp HHHHHH----------------HHHHH--HC-------------------------------CCHHHHHH--------TC
T ss_pred HHHHHH----------------HHHHh--hC-------------------------------CCHHHHhc--------CC
Confidence 433220 00000 00 00000000 14
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
||+++.+|++.|...+.++++++.|+|... ..+|...++++.+..++.-+|.+ |.+-+|..
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI-----------DyLqlm~~ 170 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI-----------DYLQLMSG 170 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE-----------EEEECCCT
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE-----------echHHhcC
Confidence 999999999999888889999999998643 33555666665544423434433 66666654
No 322
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.70 E-value=4.5e-07 Score=108.42 Aligned_cols=48 Identities=38% Similarity=0.571 Sum_probs=42.4
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~ 221 (1156)
+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++.+
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 688999999999 99999999999999999999874 6889999877543
No 323
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.64 E-value=2.6e-06 Score=92.84 Aligned_cols=51 Identities=25% Similarity=0.392 Sum_probs=34.6
Q ss_pred eeEEece-eeEEeccchhhhcccccCceEEeeeeeEEEeC---CeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 855 SLTFDEV-VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 855 ~l~~~~v-~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~---Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.+.++|+ +++++ +...+|+|+|++|++ |++++|+|++||||||+.++|++.
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4778888 77662 123589999999999 999999999999999999999974
No 324
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.63 E-value=3.4e-06 Score=92.31 Aligned_cols=62 Identities=19% Similarity=0.071 Sum_probs=46.5
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHh---cCCCCCCCceeEEE--------EcCccCCCcC----ccceEEEE
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALA---GKLDPTLKVSGTVT--------YNGHDMDEFV----PQRTAAYI 231 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~--------~nG~~~~~~~----~~~~~~yv 231 (1156)
++++.+ ++|++++|+|||||||||++++|+ |...++ +|.|. .+|.++.... ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 988777 89998 8888764321 12567888
Q ss_pred cCC
Q 001108 232 SQH 234 (1156)
Q Consensus 232 ~Q~ 234 (1156)
+|.
T Consensus 93 ~~~ 95 (252)
T 4e22_A 93 FVS 95 (252)
T ss_dssp EEE
T ss_pred Eec
Confidence 874
No 325
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.62 E-value=2.4e-06 Score=90.00 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=42.9
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEE--EEcCccCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV--TYNGHDMD 220 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V--~~nG~~~~ 220 (1156)
.+..+++++..++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 345566777778999999999999999999999999986 3 5777 88887653
No 326
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.62 E-value=1.4e-05 Score=99.55 Aligned_cols=133 Identities=15% Similarity=0.094 Sum_probs=72.2
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCCHHHHHHH
Q 001108 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLF 964 (1156)
Q Consensus 888 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~ 964 (1156)
|+.+++|..++|+|++|+|||||++.|++....-...|+| .+|..... ....+.+++..|...+...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~--------- 72 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--------- 72 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET---------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC---------
Confidence 3467889999999999999999999999643211123555 44433221 1112223333332111100
Q ss_pred HHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 001108 965 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044 (1156)
Q Consensus 965 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~ 1044 (1156)
.....++..||-..++ .......-..+..++++| |+.|+++.+..
T Consensus 73 -----------------------------~~~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 73 -----------------------------GHRVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp -----------------------------TEEEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred -----------------------------CEEEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 0111111122222222 112222335678899999 99999988874
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCcH
Q 001108 1045 IVMRTVRNTVDTGRTVVCTIHQPSI 1069 (1156)
Q Consensus 1045 ~i~~~l~~~~~~g~tvi~~~H~~~~ 1069 (1156)
.+ +.+ ...|.++|++.|..+.
T Consensus 118 ~~-~~~---~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 118 AW-TVA---ERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HH-HHH---HHTTCCEEEEEECGGG
T ss_pred HH-HHH---HHccCCEEEEecCCch
Confidence 43 333 3358899999998764
No 327
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.61 E-value=3.1e-05 Score=97.98 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=57.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEpts-gLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.... ....+++++.+++...+.+++++.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHHHHHHHhcCC
Confidence 3479999999999999999999999999996 999887777776665432 234566676788877787888753
No 328
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.59 E-value=1.9e-05 Score=82.92 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=25.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 890 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
+|++|++++|+|||||||||++++|++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999999999875
No 329
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.57 E-value=5.5e-06 Score=90.33 Aligned_cols=38 Identities=42% Similarity=0.517 Sum_probs=35.6
Q ss_pred eEeeceeEEEeC---CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 166 TILKDVSGVIKP---GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 166 ~iL~~vs~~i~~---G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.+|+|+|+.+++ |+.++|+|++||||||+.++|++.+.
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999 99999999999999999999999754
No 330
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.53 E-value=1.4e-05 Score=84.16 Aligned_cols=71 Identities=6% Similarity=0.033 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHH-HHHhcCeEEEEec
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID-IFEAFDELFLMKR 1083 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~-i~~~~d~v~~l~~ 1083 (1156)
+.|+.+|..++..+..+|..+..+ ++.++|.....+.+.++.. .+.+||+.+|..... ....||.+++|.-
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 678888999998888888644322 3455666666665555432 356888888875321 2456899888863
No 331
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.50 E-value=5.1e-07 Score=107.94 Aligned_cols=74 Identities=23% Similarity=0.267 Sum_probs=49.8
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh---cccceEEEeccCCC-CCCCCCH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI-HSPFVTI 958 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~-~~~~~Tv 958 (1156)
+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.+.... ...+.+++++|... ..|.+.+
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 578899999999 89999999999999999998643 35678887654221 11122445555543 3344455
Q ss_pred HHHH
Q 001108 959 YESL 962 (1156)
Q Consensus 959 ~e~l 962 (1156)
.|++
T Consensus 129 IDEI 132 (499)
T 2dhr_A 129 IDEI 132 (499)
T ss_dssp EECG
T ss_pred EehH
Confidence 5555
No 332
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.50 E-value=9.2e-05 Score=83.08 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=83.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCC-CCCHHHHHHHHHHhh
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP-FVTIYESLLFSAWLR 969 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~-~~Tv~e~l~~~~~lr 969 (1156)
+++| +++|+|++|+|||||++.|.|... . + ..+.+ ..+..+..|++.+++.... .-|.
T Consensus 6 ~r~~-~VaIvG~~nvGKSTLln~L~g~~~--~----i-~s~~~--~tTr~~~~gi~~~~~~~i~~iDTp----------- 64 (301)
T 1ega_A 6 SYCG-FIAIVGRPNVGKSTLLNKLLGQKI--S----I-TSRKA--QTTRHRIVGIHTEGAYQAIYVDTP----------- 64 (301)
T ss_dssp CEEE-EEEEECSSSSSHHHHHHHHHTCSE--E----E-CCCCS--SCCSSCEEEEEEETTEEEEEESSS-----------
T ss_pred ccCC-EEEEECCCCCCHHHHHHHHHCCCc--c----c-cCCCC--CcceeeEEEEEEECCeeEEEEECc-----------
Confidence 3444 899999999999999999998642 0 0 12222 1223455677776542110 0010
Q ss_pred CCCCCChHHHHHHHHHHH-----HHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH
Q 001108 970 LSPEVDSETRKMFIDEVM-----ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA 1042 (1156)
Q Consensus 970 ~~~~~~~~~~~~~v~~~l-----~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~--~~p~illLDEPTsgLD~~~ 1042 (1156)
....+. .....+.+ ..+.-.+..-..+. ... +|.|++ .++..+. ..|.||++ +.+|...
T Consensus 65 ---G~~~~~-~~~l~~~~~~~~~~~l~~~D~vl~Vvd--~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~ 130 (301)
T 1ega_A 65 ---GLHMEE-KRAINRLMNKAASSSIGDVELVIFVVE--GTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQ 130 (301)
T ss_dssp ---SCCHHH-HHHHHHHHTCCTTSCCCCEEEEEEEEE--TTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCC
T ss_pred ---CCCccc-hhhHHHHHHHHHHHHHhcCCEEEEEEe--CCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCc
Confidence 000000 00011111 11111111111111 123 898886 4566666 67999998 8899876
Q ss_pred -HHHHHHHHHHHHhC-CC--EEEEEecCCcHHHHHhcCeEE
Q 001108 1043 -AAIVMRTVRNTVDT-GR--TVVCTIHQPSIDIFEAFDELF 1079 (1156)
Q Consensus 1043 -~~~i~~~l~~~~~~-g~--tvi~~~H~~~~~i~~~~d~v~ 1079 (1156)
...+.+.++++.+. |. ++.+++|+.. .+.+++|.+.
T Consensus 131 ~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 131 EKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 66777888877653 43 6677788765 4666777654
No 333
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.49 E-value=3.7e-05 Score=79.33 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=30.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEc
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYN 215 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~n 215 (1156)
.+|++++|+||||||||||+++|++.+++. ..|.|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 368999999999999999999999987642 25666543
No 334
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.49 E-value=3.6e-05 Score=79.29 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=29.5
Q ss_pred eeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 885 ~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+++++.+.+| +++|+||||||||||+++|.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 6788999999 9999999999999999999864
No 335
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.48 E-value=1.5e-05 Score=90.18 Aligned_cols=78 Identities=14% Similarity=0.140 Sum_probs=52.1
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh-------cc-----cceEEEe-ccC
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF-----ARISGYC-EQN 949 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~-----~~~~gyv-~q~ 949 (1156)
++++++|.+++|++++|+|+||+||||++..|++... ...|.|.+.+.+.... .+ +..++++ +|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 3478999999999999999999999999999998543 1246677776665321 12 3457788 565
Q ss_pred CCCCCCCCHHHHH
Q 001108 950 DIHSPFVTIYESL 962 (1156)
Q Consensus 950 ~~~~~~~Tv~e~l 962 (1156)
....|..++++++
T Consensus 172 ~~~~p~~~~~~~l 184 (320)
T 1zu4_A 172 LNADPASVVFDAI 184 (320)
T ss_dssp TTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4333333334443
No 336
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.48 E-value=4e-05 Score=80.40 Aligned_cols=37 Identities=30% Similarity=0.173 Sum_probs=23.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
..+++||||.+++|++++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999999999999999964
No 337
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.47 E-value=0.00038 Score=80.44 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=35.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCc
Q 001108 1024 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPS 1068 (1156)
Q Consensus 1024 ~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~---~g~tvi~~~H~~~ 1068 (1156)
.+|.+|++||+..- |......+.+.+.+... .+.+||+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888766554 5789999999874
No 338
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.43 E-value=1.5e-05 Score=87.15 Aligned_cols=63 Identities=21% Similarity=0.104 Sum_probs=45.2
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhc---CCCCCCeEEEEEE--------EcCccCCh----hcccceEEEec
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNIT--------ISGYPKKQ----ETFARISGYCE 947 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gyv~ 947 (1156)
++++.+ ++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ..+++.+++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 444443 789999999999999999999999 8654 5678887 78876532 23445678888
Q ss_pred cCC
Q 001108 948 QND 950 (1156)
Q Consensus 948 q~~ 950 (1156)
|.+
T Consensus 94 ~~~ 96 (252)
T 4e22_A 94 VSQ 96 (252)
T ss_dssp EEE
T ss_pred ecC
Confidence 753
No 339
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.41 E-value=0.00017 Score=83.13 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 1065 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H 1065 (1156)
.+..++++..+++..+.+|++++|.-..+..|... ...+++++.+...| +||++.++
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999777764333445433 34456667665555 56666665
No 340
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.38 E-value=4.3e-05 Score=79.27 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcCCCC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAGRKT 919 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g~~~ 919 (1156)
|++++|+||||||||||+++|+|...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999653
No 341
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.38 E-value=4.8e-05 Score=81.81 Aligned_cols=42 Identities=19% Similarity=0.067 Sum_probs=35.5
Q ss_pred eeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccC
Q 001108 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (1156)
Q Consensus 171 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~ 219 (1156)
-++..++|++++|.|++|||||||+++|+|. .|+|.+++.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 3445579999999999999999999999997 47788888664
No 342
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.34 E-value=8.7e-05 Score=78.48 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=27.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999875
No 343
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.32 E-value=5.8e-05 Score=81.18 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=33.9
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 888 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
++..++|++++|.|+||||||||+++|+|. .|.|.+.+.|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 345579999999999999999999999986 25577777664
No 344
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.32 E-value=7.1e-05 Score=77.21 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=29.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEc
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 930 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~ 930 (1156)
.+|++++|+||||||||||+++|++.... ...|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeecc
Confidence 36899999999999999999999986431 134555443
No 345
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.31 E-value=6.6e-05 Score=78.50 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=26.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.+|++++|+||||||||||++.|++.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999999875
No 346
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.31 E-value=0.00071 Score=77.26 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=25.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
+-+++|+++.|.||+|+|||||+..++.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999999998876
No 347
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.30 E-value=0.00021 Score=75.07 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=37.7
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH--HhhcCeEEEEc
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET--YDLFDDIILLS 399 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~--~~~~D~iilL~ 399 (1156)
.+.|+.+|..+++.+..+|..+.++ .+.+++.....+.+.++. ..++++|+. .+...+. ...||.+++|.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~---~~~~~vv~~-~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAE---QTAPYTLFV-VPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHT---CCSSEEEEE-CTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHh---cCCCEEEEE-echhhhcCcHhhCCEEEEEE
Confidence 3678999999999999888765544 234556555555544432 123444443 3433333 56788877764
No 348
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.30 E-value=0.00018 Score=81.24 Aligned_cols=130 Identities=12% Similarity=0.142 Sum_probs=78.5
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 962 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l 962 (1156)
-|+++.+-+++|+++.|.|++|+|||||+..++..... .| ..+.|+.- .++..+-.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g---------~~vl~~sl------E~s~~~l~ 112 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---------ND---------DVVNLHSL------EMGKKENI 112 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEEC------CCCHHHHH
Confidence 46777777999999999999999999998888742110 01 11333321 13332221
Q ss_pred HHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 001108 963 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042 (1156)
Q Consensus 963 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~ 1042 (1156)
. ++......+++..+.+.. ..||.++++|+..|...+.++++.+.|+|...+
T Consensus 113 ~------------------R~~~~~~~i~~~~l~~~~------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~---- 164 (315)
T 3bh0_A 113 K------------------RLIVTAGSINAQKIKAAR------RDFASEDWGKLSMAIGEISNSNINIFDKAGQSV---- 164 (315)
T ss_dssp H------------------HHHHHHTTCCHHHHHSCH------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH----
T ss_pred H------------------HHHHHHcCCCHHHHhcCC------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH----
Confidence 1 111111111221121100 128999999999999999999999999986432
Q ss_pred HHHHHHHHHHHHhC-CCE--EEEEec
Q 001108 1043 AAIVMRTVRNTVDT-GRT--VVCTIH 1065 (1156)
Q Consensus 1043 ~~~i~~~l~~~~~~-g~t--vi~~~H 1065 (1156)
..+...++++.++ |.. +|++-|
T Consensus 165 -~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 165 -NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp -HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred -HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 3455556665443 666 777755
No 349
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.29 E-value=5.1e-05 Score=79.83 Aligned_cols=41 Identities=27% Similarity=0.130 Sum_probs=34.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCcc
Q 001108 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (1156)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~ 218 (1156)
.++|++++|+|+||||||||+++|++.+.+. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 4688999999999999999999999998765 6777776544
No 350
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.25 E-value=3.8e-05 Score=88.58 Aligned_cols=44 Identities=36% Similarity=0.321 Sum_probs=39.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEE
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY 214 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 214 (1156)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 45899999999999999999999999999999999864 577655
No 351
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.25 E-value=8.7e-05 Score=75.88 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=31.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~ 219 (1156)
.+|++++|+|||||||||++++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCccc
Confidence 468999999999999999999999874 6677776543
No 352
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.24 E-value=0.00059 Score=78.42 Aligned_cols=56 Identities=7% Similarity=0.131 Sum_probs=41.6
Q ss_pred CCChhHHHHHHHHHHHhcCCccceee-cCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMD-EISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLD-EptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i 381 (1156)
.+|+||+|++. +.+...++-++++| ++.+++|......+++.+..... +..++++.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 58999998876 55556777888999 99999999988888877765431 44555444
No 353
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.24 E-value=0.0014 Score=72.91 Aligned_cols=27 Identities=44% Similarity=0.674 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++.-++|.||||+|||||+++|++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999875
No 354
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.22 E-value=0.00015 Score=76.48 Aligned_cols=31 Identities=29% Similarity=0.168 Sum_probs=27.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
-.+++|.+++|+|+||||||||++.|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567899999999999999999999999863
No 355
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.21 E-value=0.00021 Score=82.26 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=29.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC--CCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK--LDPT 205 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~--~~~~ 205 (1156)
..+|+++++.++ .++|+|++||||||||++|.|. ++..
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~ 63 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCC
Confidence 358999999998 9999999999999999999994 4544
No 356
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.21 E-value=0.00043 Score=78.15 Aligned_cols=38 Identities=29% Similarity=0.306 Sum_probs=33.2
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
...-|+++.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34568888888999999999999999999999888754
No 357
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.20 E-value=0.0014 Score=72.99 Aligned_cols=72 Identities=24% Similarity=0.267 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCc---HHH
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDI 1071 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~----------~~~~i~~~l~~~~~----~g~tvi~~~H~~~---~~i 1071 (1156)
+++++.|..++.+...+|.+||+||+.+-++.. ....++..+..... .+..||+++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 466777777888888899999999998766532 22234444443321 2356788898753 234
Q ss_pred HHhcCeEEE
Q 001108 1072 FEAFDELFL 1080 (1156)
Q Consensus 1072 ~~~~d~v~~ 1080 (1156)
...|++.+.
T Consensus 177 ~~R~~~~i~ 185 (297)
T 3b9p_A 177 LRRFTKRVY 185 (297)
T ss_dssp HHHCCEEEE
T ss_pred HhhCCeEEE
Confidence 445655443
No 358
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.18 E-value=0.00082 Score=76.12 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=25.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
+-+++|+++.|.||+|+|||||...++.
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 5689999999999999999999988875
No 359
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.15 E-value=4.7e-05 Score=94.74 Aligned_cols=49 Identities=31% Similarity=0.279 Sum_probs=35.3
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc
Q 001108 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF 222 (1156)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~ 222 (1156)
|+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|..+.+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~ 51 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDY 51 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccccC
Confidence 3457789999999999999999999999765431 226777 566555443
No 360
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.11 E-value=0.00016 Score=75.92 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=38.2
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEE--EEcCccC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI--TISGYPK 934 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i--~i~g~~~ 934 (1156)
.+.+++++..++|++++|+|||||||||+.++|++... ..|.+ .++|.+.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 34566677778999999999999999999999998542 12444 7776543
No 361
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.07 E-value=0.00018 Score=75.99 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=25.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRKT 919 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~ 919 (1156)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999998754
No 362
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.04 E-value=7.2e-05 Score=86.28 Aligned_cols=157 Identities=12% Similarity=0.061 Sum_probs=85.8
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCC-CCCCCHHH
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH-SPFVTIYE 960 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~-~~~~Tv~e 960 (1156)
.+|+++++.+++|++++|+||||||||||+++|+|.. .|.+.....+.. .....+|+++|...+ ++..+...
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~~--~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPLD--RLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCTT--THHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccch--hHHHHHHHhcchhHHHHHHHHHHH
Confidence 4799999999999999999999999999999999843 344443121111 111235666766532 22222211
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHHH---cCCCc-cc---cccc--C--CCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001108 961 SLLFSAWLRLSPEVDSETRKMFIDEVMEL---VELNP-LR---QSLV--G--LPGVSGLSTEQRKRLTIAVELVANPSII 1029 (1156)
Q Consensus 961 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~---l~l~~-~~---~~~~--~--~~~~~~LSgGqrqrl~iA~aL~~~p~il 1029 (1156)
.+ .+.............+...++- +-+.. .. +.+. + ......+++|+++|+..+++++..|+++
T Consensus 230 ~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 230 GE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp TT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 10 0100000000001122333320 00110 00 1000 0 0012458899999999988888999987
Q ss_pred E-EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 001108 1030 F-MDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061 (1156)
Q Consensus 1030 l-LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi 1061 (1156)
+ ||+|+. .+++++.++|++++
T Consensus 305 iyLd~~~~-----------~l~~RL~~Rg~t~~ 326 (377)
T 1svm_A 305 HCLERSEF-----------LLEKRIIQSGIALL 326 (377)
T ss_dssp HHHHTCTH-----------HHHTTCTTCHHHHH
T ss_pred EEEeCCHH-----------HHHHHHHHcCccHH
Confidence 6 999987 23555555565443
No 363
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.04 E-value=0.00011 Score=88.99 Aligned_cols=42 Identities=33% Similarity=0.421 Sum_probs=36.6
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcee-EEE-EcCcc
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG-TVT-YNGHD 218 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~-~nG~~ 218 (1156)
.+++|++++|+|+||||||||+++|+|.+.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 57899999999999999999999999999876 65 674 78754
No 364
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.00 E-value=0.0023 Score=72.38 Aligned_cols=34 Identities=32% Similarity=0.378 Sum_probs=28.8
Q ss_pred eecee-EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 168 LKDVS-GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 168 L~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 44432 57999999999999999999999998865
No 365
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.98 E-value=8.9e-05 Score=83.55 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
+++|+||||||||||+++|.+.+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999863
No 366
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.97 E-value=0.00025 Score=72.09 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999864
No 367
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.96 E-value=0.0013 Score=77.84 Aligned_cols=168 Identities=17% Similarity=0.191 Sum_probs=91.8
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC--CCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 960 (1156)
-|+.+.+-+++|+++.|.|++|+|||||...++.... .|. ..++++.. ++..+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~--~vl~~slE-----------------------~~~~~ 243 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV--GVGIYSLE-----------------------MPAAQ 243 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC--CEEEEESS-----------------------SCHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC--eEEEEECC-----------------------CCHHH
Confidence 3666666799999999999999999999888875321 110 11222221 12111
Q ss_pred HHH--HHHHhhCC------CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCEEE
Q 001108 961 SLL--FSAWLRLS------PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIF 1030 (1156)
Q Consensus 961 ~l~--~~~~lr~~------~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~--~~p~ill 1030 (1156)
-.. .+.....+ ...+.++ ...+.+.++.+.-.++.-. . ..++|..+- .+.++.+. .+|++++
T Consensus 244 l~~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l~i~---d--~~~~s~~~l--~~~~~~l~~~~~~~lIv 315 (444)
T 2q6t_A 244 LTLRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPIYID---D--TPDLTLMEV--RARARRLVSQNQVGLII 315 (444)
T ss_dssp HHHHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCEEEE---C--CTTCBHHHH--HHHHHHHHHHSCCCEEE
T ss_pred HHHHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCEEEE---C--CCCCCHHHH--HHHHHHHHHHcCCCEEE
Confidence 110 00000000 0112222 2233344444332222111 1 124677664 44556665 4799999
Q ss_pred EeCCCCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEecC-----------CcH-------HHHHhcCeEEEE
Q 001108 1031 MDEPTSGLDA----------RAAAIVMRTVRNTVDT-GRTVVCTIHQ-----------PSI-------DIFEAFDELFLM 1081 (1156)
Q Consensus 1031 LDEPTsgLD~----------~~~~~i~~~l~~~~~~-g~tvi~~~H~-----------~~~-------~i~~~~d~v~~l 1081 (1156)
+|..+.=.+. .....+.+.|+.++++ |++||+++|- |.. .+...+|.++.|
T Consensus 316 ID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L 395 (444)
T 2q6t_A 316 IDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFI 395 (444)
T ss_dssp EECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEE
T ss_pred EcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEE
Confidence 9998754322 1234677778887754 9999999983 211 234567888888
Q ss_pred ec
Q 001108 1082 KR 1083 (1156)
Q Consensus 1082 ~~ 1083 (1156)
.+
T Consensus 396 ~r 397 (444)
T 2q6t_A 396 YR 397 (444)
T ss_dssp EE
T ss_pred ec
Confidence 65
No 368
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.96 E-value=0.00039 Score=69.40 Aligned_cols=30 Identities=37% Similarity=0.526 Sum_probs=24.5
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 200 (1156)
+.++.+.+| +++|+|||||||||+|.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344555555 999999999999999999873
No 369
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.95 E-value=0.00035 Score=69.79 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=24.1
Q ss_pred eeeEEEeCCeEEEEEcCCCCcHHHHHhhhc
Q 001108 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (1156)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~ 915 (1156)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344556665 89999999999999999986
No 370
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.95 E-value=0.003 Score=72.11 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=28.9
Q ss_pred eecee-EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 168 LKDVS-GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 168 L~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44433 57899999999999999999999998875
No 371
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.91 E-value=0.0004 Score=82.15 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=47.8
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE-EecCcEEEEecCCC
Q 001108 1024 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL-MKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1024 ~~p~illLDEPTsgLD~-~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~-l~~Gg~~~~~g~~~ 1094 (1156)
.+|++||+||+..-.+. .++..+..++..+.+.|+.||+++|.+..++....+++.- +. .|.++..+++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCC
Confidence 38999999999887664 6778888999888888999999999864322111122211 22 35666666654
No 372
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.87 E-value=0.0033 Score=72.45 Aligned_cols=29 Identities=31% Similarity=0.320 Sum_probs=25.2
Q ss_pred CCe--EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 001108 177 PGR--LTLLLGPPSSGKTTLLLALAGKLDPT 205 (1156)
Q Consensus 177 ~G~--~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1156)
++. .++|.||+|+|||||++.+++.+.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 345 89999999999999999999987653
No 373
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.85 E-value=0.0013 Score=76.88 Aligned_cols=25 Identities=40% Similarity=0.422 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
++.+++++|++|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999964
No 374
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.79 E-value=0.00047 Score=79.35 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999874
No 375
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.79 E-value=0.00042 Score=72.43 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=24.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.+|++++|+||||||||||++.|.+..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999999999753
No 376
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.73 E-value=0.0005 Score=70.10 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=29.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
.+|++++|+|+|||||||+.++|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 468999999999999999999998742 445666543
No 377
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.73 E-value=0.00022 Score=74.83 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=30.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
.++|++++|+|+||||||||+++|++... ...|.+.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccC
Confidence 57899999999999999999999998542 113445554433
No 378
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.70 E-value=0.00039 Score=79.67 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=33.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCcc
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~ 218 (1156)
+++.+++|+|+||||||||++.|+|.+.+. .|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeec
Confidence 467899999999999999999999987765 6777776554
No 379
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.69 E-value=0.00015 Score=82.98 Aligned_cols=48 Identities=21% Similarity=0.142 Sum_probs=40.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG 216 (1156)
.+++++++.+++|.+++|+|+||+|||||++.|++.+.+. .|+|.+-+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~ 91 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIA 91 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 4677888888999999999999999999999999988654 55555543
No 380
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.67 E-value=0.0024 Score=71.32 Aligned_cols=29 Identities=45% Similarity=0.498 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1156)
|...++|.||||+|||||.++|++.+...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 45689999999999999999999987553
No 381
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.66 E-value=0.00024 Score=84.04 Aligned_cols=47 Identities=9% Similarity=0.109 Sum_probs=32.1
Q ss_pred cCCccceeecCCCCCCH-HHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 001108 340 GPALALFMDEISTGLDS-STTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1156)
Q Consensus 340 ~~p~vllLDEptsgLD~-~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~ 387 (1156)
.++++||+||+..-.+. .+...++..+..+.. .+..+|++.+.+..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQK 240 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHH
Confidence 37899999999887764 566777788876543 455666655544443
No 382
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.65 E-value=0.0012 Score=83.88 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=27.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
+.+++|+.+.|+||||+|||||+++|++..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 357899999999999999999999999865
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.63 E-value=0.0004 Score=71.22 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=31.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcee--EEEEcCccC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG--TVTYNGHDM 219 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~nG~~~ 219 (1156)
++|++++|+|++||||||+++.|++.+.+ .| .|.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChHH
Confidence 47999999999999999999999998754 34 566666543
No 384
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.60 E-value=0.00068 Score=72.81 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=27.9
Q ss_pred EeeceeEEEe---CCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 167 ILKDVSGVIK---PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 167 iL~~vs~~i~---~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
=|.++++++. +|.+++|.||+||||||+++.|+..+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4777888777 9999999999999999999999998763
No 385
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.59 E-value=0.00016 Score=81.44 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=31.4
Q ss_pred eEEeeeeeEEEeCCe------EEEEEcCCCCcHHHHHhhhcCCC
Q 001108 881 LVLLNGVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge------~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
...|++++..|..++ ++||+||||||||||+++|.+..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345777777776665 99999999999999999999853
No 386
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.55 E-value=0.00021 Score=76.14 Aligned_cols=34 Identities=32% Similarity=0.383 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC---CCCCCceeEEEE
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKL---DPTLKVSGTVTY 214 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~---~~~~~~~G~V~~ 214 (1156)
+.+++|+|||||||||++++|++.+ .++ +|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d---~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD---SGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE---HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc---Ccceee
Confidence 4689999999999999999999876 333 677765
No 387
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.54 E-value=0.0013 Score=83.73 Aligned_cols=32 Identities=41% Similarity=0.559 Sum_probs=29.0
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
+.+++|+.++|+||||+|||||+++|++.+..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999999999999753
No 388
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.54 E-value=0.0007 Score=68.74 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.|++++|+|+|||||||+.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
No 389
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.53 E-value=0.0009 Score=70.31 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=26.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
-.+++|.+++|+|++||||||+.+.|++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999999999864
No 390
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.53 E-value=0.00045 Score=78.64 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=43.3
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEee--------------eeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLN--------------GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~--------------~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
..+.|+|+++.++. .+..|+ |+.+.+.+|+.++|+||+|+|||||++.|++.
T Consensus 132 ~ri~Fe~ltp~yP~------------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 132 NKILFENLTPLHAN------------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp TSCCTTTSCEESCC------------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCceeccccccCCC------------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 35778888877753 234677 89999999999999999999999999999863
No 391
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.52 E-value=0.0019 Score=76.40 Aligned_cols=41 Identities=29% Similarity=0.373 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-------C--CCceeEEEEcCccC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLDP-------T--LKVSGTVTYNGHDM 219 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~-------~--~~~~G~V~~nG~~~ 219 (1156)
-.++|+|+||+|||||++.|+|.... + -..+|.+.++|.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 47999999999999999999998531 0 02379999999764
No 392
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.46 E-value=0.0025 Score=71.34 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 890 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.++++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35778889999999999999999999743
No 393
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.45 E-value=0.00046 Score=83.84 Aligned_cols=46 Identities=26% Similarity=0.468 Sum_probs=38.8
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcC
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG 216 (1156)
+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|.|.++|
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 556666666 89999999999999999999999998765 77776655
No 394
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.44 E-value=0.0027 Score=64.51 Aligned_cols=27 Identities=41% Similarity=0.662 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999874
No 395
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.43 E-value=0.0026 Score=64.63 Aligned_cols=27 Identities=37% Similarity=0.687 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999853
No 396
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.41 E-value=0.0014 Score=69.02 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=23.8
Q ss_pred eeeEEEeCCeEEEEEcCCCCcHHHHHhhhc
Q 001108 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (1156)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~ 915 (1156)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 344556665 99999999999999999884
No 397
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.39 E-value=0.0075 Score=65.50 Aligned_cols=32 Identities=31% Similarity=0.613 Sum_probs=23.0
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
++++++.+++| +.|.||+|+|||||+++|++.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHH
Confidence 44555555555 889999999999999999974
No 398
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.39 E-value=0.0054 Score=71.76 Aligned_cols=36 Identities=28% Similarity=0.130 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEc
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYN 215 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~n 215 (1156)
++.+++++||+||||||++..|++.+.+. .++|.+-
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEE
Confidence 68999999999999999999999988654 4555543
No 399
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.37 E-value=0.00042 Score=83.84 Aligned_cols=41 Identities=39% Similarity=0.554 Sum_probs=32.3
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEE-EEE-EcCc
Q 001108 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NIT-ISGY 932 (1156)
Q Consensus 890 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G-~i~-i~g~ 932 (1156)
.+++|++++|+|+||||||||+++|+|.... ..| .+. ++|.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGD 407 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCc
Confidence 3689999999999999999999999996532 233 464 7764
No 400
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.37 E-value=0.00095 Score=76.74 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=25.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
.+++.++|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45779999999999999999999987643
No 401
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.34 E-value=0.00077 Score=71.21 Aligned_cols=41 Identities=27% Similarity=0.347 Sum_probs=34.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcee--EEEEcCcc
Q 001108 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG--TVTYNGHD 218 (1156)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~nG~~ 218 (1156)
+++|.+++|+|++||||||+.+.|++.+.+. .| .+.++|..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~ 64 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 64 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChH
Confidence 4678999999999999999999999998754 67 77777644
No 402
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.32 E-value=0.0019 Score=67.92 Aligned_cols=29 Identities=38% Similarity=0.582 Sum_probs=23.7
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALA 199 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~ 199 (1156)
+.++.+.+| +++|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 344555554 99999999999999999986
No 403
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.30 E-value=0.0056 Score=65.69 Aligned_cols=66 Identities=17% Similarity=0.107 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1076 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d 1076 (1156)
+.|.-.+.. ...+.+-++|++||+-. ++|......+++.+......-++|++++--+.....++|+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 445554442 33578899999999966 6777666444444444333335666665544433444443
No 404
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.29 E-value=0.0026 Score=65.75 Aligned_cols=34 Identities=38% Similarity=0.444 Sum_probs=21.0
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 788999998887 6689999999999999999974
No 405
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.21 E-value=0.0019 Score=66.14 Aligned_cols=40 Identities=30% Similarity=0.248 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCcc
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~ 218 (1156)
.+++|+|++|||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5889999999999999999999865432235777776654
No 406
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.21 E-value=0.0015 Score=68.44 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=26.3
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
...+|.+++|+||||||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346889999999999999999999998764
No 407
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.18 E-value=0.0034 Score=64.85 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=21.1
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998887 6899999999999999999973
No 408
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.18 E-value=0.002 Score=66.42 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=26.4
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46778888999999999999999999999976
No 409
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.14 E-value=0.00094 Score=71.82 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEpts-gLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.|.-.+.. ...+.+-+++++||.-. ++|......+++.+..... ...+++++.+.+.....++|+.
T Consensus 163 pg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 163 VGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp HHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTTS
T ss_pred HHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcCC
Confidence 35444432 33578889999999976 6877766555554443221 2346666767666666566653
No 410
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.12 E-value=0.0022 Score=68.80 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=25.7
Q ss_pred eeeeeEEEe---CCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 884 LNGVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 884 L~~vs~~i~---~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
|.++++.+. +|.+++|.|++||||||+++.|+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 677777776 89999999999999999999999754
No 411
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.08 E-value=0.0062 Score=71.90 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=28.3
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
|+.+.+-+++|+++.|.|++|+|||||..-++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 566666689999999999999999999877764
No 412
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.05 E-value=0.014 Score=62.49 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=29.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEec
Q 001108 1024 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIH 1065 (1156)
Q Consensus 1024 ~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~--~g~tvi~~~H 1065 (1156)
.+|+++++..+.+.++......+..+++.+.. ...+||+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 46899999998888888766666555543321 1258888888
No 413
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.05 E-value=0.017 Score=62.01 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 5799999999999999999997654
No 414
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.03 E-value=0.0014 Score=68.39 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=29.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 36778888877775 689999999999999999874
No 415
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.00 E-value=0.0009 Score=76.37 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=33.2
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.+++++++.+.+|.+++|+|++|||||||++.|++.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468889999999999999999999999999999874
No 416
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.00 E-value=0.046 Score=62.42 Aligned_cols=30 Identities=43% Similarity=0.628 Sum_probs=26.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+=+++|+++.|.||+|+|||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999998887654
No 417
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.99 E-value=0.00073 Score=77.75 Aligned_cols=76 Identities=14% Similarity=0.127 Sum_probs=35.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++.............+..|.+.....+++.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~ 100 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVV 100 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEEEEEEEE
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcccceEEE
Confidence 34678888877 999999999999999998874432 444433333221110011234444544333345666
Q ss_pred HHHHH
Q 001108 245 ETLAF 249 (1156)
Q Consensus 245 E~l~f 249 (1156)
+|.-+
T Consensus 101 DTpG~ 105 (361)
T 2qag_A 101 DTPGY 105 (361)
T ss_dssp C----
T ss_pred Eeccc
Confidence 66544
No 418
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.97 E-value=0.0019 Score=66.57 Aligned_cols=30 Identities=40% Similarity=0.514 Sum_probs=26.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1156)
++|.+++|+|++||||||+.+.|++.+.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999999987653
No 419
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.96 E-value=0.0021 Score=75.05 Aligned_cols=45 Identities=24% Similarity=0.086 Sum_probs=38.8
Q ss_pred eceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCcc
Q 001108 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (1156)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~ 218 (1156)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 567777 89999999999999999999999998875 6788776654
No 420
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.93 E-value=0.026 Score=63.48 Aligned_cols=28 Identities=32% Similarity=0.499 Sum_probs=25.3
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
+-+++|+++.|.|++|+|||||...++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999999987774
No 421
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.90 E-value=0.0088 Score=65.88 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.++.-+.|.||+|+|||||.+.|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 455668999999999999999998643
No 422
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.88 E-value=0.0014 Score=75.02 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+++.+++|+|++|||||||++.|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999984
No 423
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.87 E-value=0.011 Score=67.65 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=25.0
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
+-+++|+++.|.|++|+|||||...++.
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999999888774
No 424
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.87 E-value=0.013 Score=64.56 Aligned_cols=28 Identities=43% Similarity=0.666 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.++.-++|.||+|+|||||+++|+..+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566799999999999999999998763
No 425
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.87 E-value=0.0034 Score=72.48 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=26.0
Q ss_pred eeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 171 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3445678889999999999999999999987
No 426
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.85 E-value=0.0012 Score=80.02 Aligned_cols=49 Identities=22% Similarity=0.343 Sum_probs=38.7
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
.+++++++.+ +|+.+.|+||||+|||||+++|++... ...|.|.++|..
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~~ 145 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC--
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEecccc
Confidence 3567777777 899999999999999999999998643 346777777743
No 427
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.85 E-value=0.011 Score=62.84 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=41.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCcHHHHHhcCeEEEEe
Q 001108 1025 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1025 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~~~~~i~~~~d~v~~l~ 1082 (1156)
+|++|++||.-. |+.. +.+.++.+++.|.+||++-| .++.++.+.+|.|..|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6643 44566777777999999999 56677888999998864
No 428
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.82 E-value=0.0052 Score=72.54 Aligned_cols=39 Identities=21% Similarity=0.432 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCcHHHHHhhhcCCCC----------CCeEEEEEEEcCcc
Q 001108 895 VLTALMGVSGAGKTTLMDVLAGRKT----------GGYITGNITISGYP 933 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g~~~----------~~~~~G~i~i~g~~ 933 (1156)
-.++|+|+||+|||||++.|+|... ..+..|.+.++|.+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 3699999999999999999999632 11345788888864
No 429
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.79 E-value=0.0082 Score=60.22 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.++|+|++|+|||||++.|+|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999643
No 430
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.78 E-value=0.0035 Score=64.05 Aligned_cols=26 Identities=42% Similarity=0.460 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
++|++++|+|++||||||+.+.|++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999874
No 431
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.78 E-value=0.00039 Score=80.03 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=26.6
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 31 ~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 31 SVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 4677888876 999999999999999998753
No 432
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.75 E-value=0.0022 Score=69.85 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=32.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccC
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~ 219 (1156)
..+++.++.|+|+|||||||+.+.|+..+. .|.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHHH
Confidence 456788999999999999999999998874 24566776543
No 433
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.71 E-value=0.014 Score=65.66 Aligned_cols=105 Identities=14% Similarity=0.217 Sum_probs=0.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~ 971 (1156)
+++..+.|.||+|+|||||++.|++..... |.+ +.|+.
T Consensus 35 ~~~~~lll~G~~GtGKT~la~~i~~~~~~~---------~~~---------~~~i~------------------------ 72 (324)
T 1l8q_A 35 SLYNPIFIYGSVGTGKTHLLQAAGNEAKKR---------GYR---------VIYSS------------------------ 72 (324)
T ss_dssp TSCSSEEEECSSSSSHHHHHHHHHHHHHHT---------TCC---------EEEEE------------------------
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHHHC---------CCE---------EEEEE------------------------
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH--HHHHHHHHH
Q 001108 972 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1049 (1156)
Q Consensus 972 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~--~~~~~i~~~ 1049 (1156)
......++.+. +..+..+.. .....+|.+||+||+.. +.. .++..+...
T Consensus 73 -------~~~~~~~~~~~------------------~~~~~~~~~---~~~~~~~~vL~iDEi~~-l~~~~~~~~~l~~~ 123 (324)
T 1l8q_A 73 -------ADDFAQAMVEH------------------LKKGTINEF---RNMYKSVDLLLLDDVQF-LSGKERTQIEFFHI 123 (324)
T ss_dssp -------HHHHHHHHHHH------------------HHHTCHHHH---HHHHHTCSEEEEECGGG-GTTCHHHHHHHHHH
T ss_pred -------HHHHHHHHHHH------------------HHcCcHHHH---HHHhcCCCEEEEcCccc-ccCChHHHHHHHHH
Q ss_pred HHHHHhCCCEEEEEecCC
Q 001108 1050 VRNTVDTGRTVVCTIHQP 1067 (1156)
Q Consensus 1050 l~~~~~~g~tvi~~~H~~ 1067 (1156)
+..+.+.|..+|++++.+
T Consensus 124 l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 124 FNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHTTCEEEEEESSC
T ss_pred HHHHHHCCCeEEEEecCC
No 434
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.71 E-value=0.0037 Score=65.46 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
..+|.+++|+||||||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4688999999999999999999998643
No 435
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.70 E-value=0.0037 Score=66.42 Aligned_cols=56 Identities=21% Similarity=0.097 Sum_probs=37.2
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcCCCC-CCeEEEEEEE--------cCccCCh----hcccceEEEeccC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITI--------SGYPKKQ----ETFARISGYCEQN 949 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g~~~-~~~~~G~i~i--------~g~~~~~----~~~~~~~gyv~q~ 949 (1156)
+.+++|+|++||||||+.++|++... .-...|.+.. +|.+... ....+.+|+++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 56899999999999999999987431 1134466665 5655432 1233456777765
No 436
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.63 E-value=0.0011 Score=75.25 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=31.3
Q ss_pred EeeceeEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCCC
Q 001108 167 ILKDVSGVIKPGRL--TLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 167 iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+++.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56666667777777 99999999999999999999864
No 437
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.61 E-value=0.0023 Score=66.59 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=30.4
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3678888888887 5789999999999999999874
No 438
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.60 E-value=0.0032 Score=71.73 Aligned_cols=33 Identities=36% Similarity=0.641 Sum_probs=31.3
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
|+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 789999999999999999999999999999875
No 439
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.58 E-value=0.0016 Score=72.62 Aligned_cols=46 Identities=26% Similarity=0.138 Sum_probs=37.3
Q ss_pred ec-eeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCcc
Q 001108 169 KD-VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (1156)
Q Consensus 169 ~~-vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~ 218 (1156)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecC
Confidence 45 777766 9999999999999999999999998764 5677665543
No 440
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.57 E-value=0.0049 Score=64.33 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001108 180 LTLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G 200 (1156)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 441
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.54 E-value=0.0051 Score=63.31 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=25.9
Q ss_pred eeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56778888999999999999999999999854
No 442
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.51 E-value=0.0074 Score=61.65 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 443
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.49 E-value=0.0066 Score=62.23 Aligned_cols=27 Identities=41% Similarity=0.667 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
No 444
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.44 E-value=0.0051 Score=68.78 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+..++|+|+||+|||||++.|.|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3489999999999999999999973
No 445
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.43 E-value=0.063 Score=61.36 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
++..-++|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 455678999999999999999999875
No 446
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.43 E-value=0.0059 Score=66.33 Aligned_cols=45 Identities=38% Similarity=0.643 Sum_probs=29.9
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCcc
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~ 218 (1156)
.++++++..++| ++|.||||+|||||+++|++.+... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHH
Confidence 345555555555 8999999999999999999986532 35566544
No 447
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.42 E-value=0.013 Score=59.78 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 448
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.39 E-value=0.0064 Score=61.80 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
|.++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 449
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.38 E-value=0.02 Score=65.64 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
..+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999864
No 450
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.34 E-value=0.037 Score=65.28 Aligned_cols=38 Identities=29% Similarity=0.571 Sum_probs=32.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34577777779999999999999999999999888754
No 451
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.28 E-value=0.0064 Score=63.42 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999875
No 452
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.27 E-value=0.0079 Score=60.37 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 453
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.26 E-value=0.006 Score=63.64 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999997
No 454
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.25 E-value=0.058 Score=61.66 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.+..-+.|.||+|+|||||.+.|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34556889999999999999999864
No 455
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.20 E-value=0.0089 Score=60.18 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999997753
No 456
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.04 E-value=0.0098 Score=61.18 Aligned_cols=27 Identities=44% Similarity=0.587 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999998754
No 457
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.03 E-value=0.0093 Score=60.98 Aligned_cols=38 Identities=34% Similarity=0.323 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCcHHHHHhhhcCCCC-CCeEEEEEEEcCc
Q 001108 895 VLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISGY 932 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g~~~-~~~~~G~i~i~g~ 932 (1156)
.+++|+|+||||||||++.|.+... .+...|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 5789999999999999999987421 1233466666543
No 458
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.02 E-value=0.0084 Score=69.21 Aligned_cols=43 Identities=19% Similarity=0.410 Sum_probs=32.0
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC---------CCeEEEEEEEcC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---------GGYITGNITISG 931 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~---------~~~~~G~i~i~g 931 (1156)
..+..|..++|+|++|+|||||++.|+|... -.+..|.+.+.+
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4567888999999999999999999998621 123457776655
No 459
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.96 E-value=0.012 Score=60.33 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
|.+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987653
No 460
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.90 E-value=0.0028 Score=72.07 Aligned_cols=41 Identities=32% Similarity=0.606 Sum_probs=34.7
Q ss_pred ceEeeceeEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCCCCC
Q 001108 165 LTILKDVSGVIKPGRL--TLLLGPPSSGKTTLLLALAGKLDPT 205 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1156)
..+++.++..++.|++ +++.||||+||||+++++++.+.+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3467777778888888 9999999999999999999987543
No 461
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.88 E-value=0.011 Score=65.49 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=28.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG 216 (1156)
..|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3567999999999999999999987653 24455554
No 462
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.86 E-value=0.013 Score=62.84 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
-+++|.||+||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999765
No 463
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.78 E-value=0.011 Score=60.73 Aligned_cols=28 Identities=36% Similarity=0.576 Sum_probs=25.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 890 AFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 890 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
...+|.++.|+|++||||||+.+.|+..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999999874
No 464
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.76 E-value=0.012 Score=65.66 Aligned_cols=30 Identities=37% Similarity=0.603 Sum_probs=26.6
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.++++.-++|.||||+|||||+++|++.+.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 356788999999999999999999999764
No 465
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.75 E-value=0.0028 Score=71.74 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=31.7
Q ss_pred EeeeeeEEEeCCeE--EEEEcCCCCcHHHHHhhhcCC
Q 001108 883 LLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~--~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+++++++.+++|+. ++|+|++||||||+.++|++.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 67888888899988 999999999999999999874
No 466
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.75 E-value=0.014 Score=59.76 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
No 467
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.72 E-value=0.015 Score=60.37 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 468
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.70 E-value=0.015 Score=59.44 Aligned_cols=26 Identities=27% Similarity=0.155 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998765
No 469
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.68 E-value=0.014 Score=63.38 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.+++|+||||||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998753
No 470
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.68 E-value=0.014 Score=62.57 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=24.7
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34678899999999999999999999864
No 471
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.68 E-value=0.015 Score=58.37 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 001108 180 LTLLLGPPSSGKTTLLLAL 198 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L 198 (1156)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 472
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.65 E-value=0.015 Score=59.48 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 473
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.64 E-value=0.16 Score=60.72 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=27.3
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
|+.+.+-+.+|+++.|.|++|+|||||..-++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 455545689999999999999999999877663
No 474
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.61 E-value=0.063 Score=63.26 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=31.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 4457777777999999999999999999998888754
No 475
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.59 E-value=0.013 Score=59.59 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
.+++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999988654
No 476
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.59 E-value=0.018 Score=59.99 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999987654
No 477
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.57 E-value=0.014 Score=60.24 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999987654
No 478
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.55 E-value=0.018 Score=58.31 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 001108 179 RLTLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G 200 (1156)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 479
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.54 E-value=0.014 Score=61.38 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=25.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
+++|.+++|+|++||||||+.+.|++..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999998753
No 480
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.51 E-value=0.015 Score=59.40 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999984
No 481
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.49 E-value=0.0062 Score=71.13 Aligned_cols=46 Identities=24% Similarity=0.088 Sum_probs=35.4
Q ss_pred eeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 885 ~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
+++++. +|++++++|+||+||||++..|++.... ..+.|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeeccc
Confidence 577777 8899999999999999999999985431 134566665554
No 482
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.49 E-value=0.014 Score=60.80 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 483
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.48 E-value=0.016 Score=59.13 Aligned_cols=26 Identities=46% Similarity=0.378 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.+..+.|.|++||||||+.+.|+..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
No 484
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.45 E-value=0.26 Score=55.37 Aligned_cols=119 Identities=23% Similarity=0.291 Sum_probs=0.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~ 971 (1156)
.|..-+-|.||.|+|||||.+.++....+... +.+++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~~~--------------------------------------- 80 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSISSS--------------------------------------- 80 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEECC---------------------------------------
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEEhH---------------------------------------
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC-------CCCCCHHHHH
Q 001108 972 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-------TSGLDARAAA 1044 (1156)
Q Consensus 972 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEP-------TsgLD~~~~~ 1044 (1156)
.+.....| ...+.-|-.+..+-..+|.|||+||. ..+.......
T Consensus 81 ----------------------~l~~~~~g-------~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~ 131 (322)
T 1xwi_A 81 ----------------------DLVSKWLG-------ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARR 131 (322)
T ss_dssp ----------------------SSCCSSCC-------SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHH
T ss_pred ----------------------HHHhhhhh-------HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHH
Q ss_pred HHHHHHHHH-----HhCCCEEEEEecCC---cHHHHHhcCeEEEE
Q 001108 1045 IVMRTVRNT-----VDTGRTVVCTIHQP---SIDIFEAFDELFLM 1081 (1156)
Q Consensus 1045 ~i~~~l~~~-----~~~g~tvi~~~H~~---~~~i~~~~d~v~~l 1081 (1156)
.+.+++..+ ...+..||.++..| +..+...||+.+.+
T Consensus 132 ~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i 176 (322)
T 1xwi_A 132 IKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYI 176 (322)
T ss_dssp HHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEEC
T ss_pred HHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEe
No 485
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.34 E-value=0.02 Score=60.33 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhc
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G 200 (1156)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 486
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.33 E-value=0.019 Score=59.16 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998764
No 487
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.32 E-value=0.02 Score=59.79 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
++|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998764
No 488
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.27 E-value=0.021 Score=59.10 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998763
No 489
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.17 E-value=0.11 Score=59.63 Aligned_cols=120 Identities=21% Similarity=0.225 Sum_probs=0.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcC--CCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHh
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~l 968 (1156)
+++|+++.|.|+.|+|||||...++. ...++.. ++++..........+..|.-.++-......++.+.+.....+
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~v---lyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTC---AFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE---EEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeE---EEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHH
Q ss_pred hCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC----------
Q 001108 969 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL---------- 1038 (1156)
Q Consensus 969 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgL---------- 1038 (1156)
.... ++++|++|..++=.
T Consensus 148 ~~~~----------------------------------------------------~~~lVVIDsl~~l~~~~e~~g~~g 175 (366)
T 1xp8_A 148 VRSG----------------------------------------------------AIDVVVVDSVAALTPRAEIEGDMG 175 (366)
T ss_dssp HTTT----------------------------------------------------CCSEEEEECTTTCCCSTTC-----
T ss_pred HhcC----------------------------------------------------CCCEEEEeChHHhccccccccccc
Q ss_pred CH---HHHHHHHHHHHHH----HhCCCEEEEEec
Q 001108 1039 DA---RAAAIVMRTVRNT----VDTGRTVVCTIH 1065 (1156)
Q Consensus 1039 D~---~~~~~i~~~l~~~----~~~g~tvi~~~H 1065 (1156)
|. ...+.+.+.++++ .+.+++||++.|
T Consensus 176 d~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 176 DSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
No 490
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.15 E-value=0.022 Score=57.78 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999765
No 491
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.15 E-value=0.026 Score=57.95 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
++.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998654
No 492
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.13 E-value=0.05 Score=73.25 Aligned_cols=30 Identities=40% Similarity=0.565 Sum_probs=27.5
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
=+++|+++.|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999987654
No 493
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.12 E-value=0.021 Score=57.36 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999854
No 494
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.12 E-value=0.025 Score=59.76 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
++|..++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998765
No 495
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.10 E-value=0.0083 Score=62.92 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988754
No 496
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.09 E-value=0.023 Score=59.43 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=24.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.++|.+++|.|++||||||+.+.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999997653
No 497
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.07 E-value=0.024 Score=57.51 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
|.++.|+|++||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998643
No 498
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.06 E-value=0.021 Score=58.95 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHhhhcCC
Q 001108 897 TALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+.|+||||||||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999999753
No 499
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.02 E-value=0.024 Score=60.77 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.4
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
-.+|.+++|+|++||||||+.+.|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 36788999999999999999999986
No 500
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.97 E-value=0.0097 Score=61.55 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356689999999999999999998764
Done!