BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001109
(1155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OAJ|A Chain A, Crystal Structure Of Sro7 From S. Cerevisiae
Length = 902
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 3/133 (2%)
Query: 28 SKDFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFK 87
+K F T YG+ S AFD Q+LLAI T G + + G +E ++ + A K
Sbjct: 3 NKIFSLAETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIK 62
Query: 88 HLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGM 147
+ F++ +LV I++ + + + L ++++ +T+ IT+ +M IG + G
Sbjct: 63 EMRFVKGI-YLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGS 121
Query: 148 VYVLKYDTEEGKL 160
+ V YD + +L
Sbjct: 122 MIV--YDIDRDQL 132
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 554 YIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSS 613
+I G+ +GS RI+DA++ + F L + +V + F + TL LA+ +
Sbjct: 450 FITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIET 509
Query: 614 GLVWLY 619
G V L+
Sbjct: 510 GDVVLF 515
>pdb|2NPS|A Chain A, Crystal Structure Of The Early Endosomal Snare Complex
Length = 74
Score = 37.4 bits (85), Expect = 0.046, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 1090 KAKYKKSEVQGTXXXXXXXKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMER 1149
K K+ +++V K+ ERGE+L+ L++++E L + A F++ +K++ R
Sbjct: 9 KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSN----RSKQLRR 64
Query: 1150 RKWWQ 1154
+ WW+
Sbjct: 65 QMWWR 69
>pdb|3HD7|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|E Chain E, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|E Chain E, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 91
Score = 37.4 bits (85), Expect = 0.052, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 1110 DKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWWQ 1154
DK+ ER +KL L +R + LQ GA F A +L +R+ WW+
Sbjct: 26 DKVLERDQKLSELDDRADALQAGASQFETSAAKL----KRKYWWK 66
>pdb|2KOG|A Chain A, Lipid-Bound Synaptobrevin Solution Nmr Structure
Length = 119
Score = 37.0 bits (84), Expect = 0.072, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 1110 DKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWWQ 1154
DK+ ER +KL L +R + LQ GA F A +L +R+ WW+
Sbjct: 54 DKVLERDQKLSELDDRADALQAGASQFETSAAKL----KRKYWWK 94
>pdb|1KIL|A Chain A, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 66
Score = 36.6 bits (83), Expect = 0.084, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 1110 DKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWWQ 1154
DK+ ER +KL L +R + LQ GA F A +L +R+ WW+
Sbjct: 25 DKVLERDQKLSELDDRADALQAGASQFETSAAKL----KRKYWWK 65
>pdb|1SFC|A Chain A, Neuronal Synaptic Fusion Complex
pdb|1SFC|E Chain E, Neuronal Synaptic Fusion Complex
pdb|1SFC|I Chain I, Neuronal Synaptic Fusion Complex
Length = 96
Score = 36.6 bits (83), Expect = 0.095, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 1110 DKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWWQ 1154
DK+ ER +KL L +R + LQ GA F A +L +R+ WW+
Sbjct: 51 DKVLERDQKLSELDDRADALQAGASQFETSAAKL----KRKYWWK 91
>pdb|1L4A|A Chain A, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX From
The Squid Loligo Pealei
Length = 80
Score = 36.2 bits (82), Expect = 0.096, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 1110 DKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWWQ 1154
DK+ ER K+ L +R + LQ GA F AG+L +R+ WW+
Sbjct: 36 DKVLERDSKISELDDRADALQAGASQFEASAGKL----KRKFWWK 76
>pdb|1N7S|A Chain A, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 63
Score = 34.7 bits (78), Expect = 0.35, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 1110 DKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWW 1153
DK+ ER +KL L +R + LQ GA F A +L +RK+W
Sbjct: 25 DKVLERDQKLSELDDRADALQAGASQFETSAAKL-----KRKYW 63
>pdb|1GL2|A Chain A, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 1095 KSEVQGTXXXXXXXKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAK 1145
+SEV+G +++ RGE L+ LR +TE+L+ +++F + ++A+
Sbjct: 15 QSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Query: 9 ATKQPSPPRQNDEIKENLTSKDFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKV 68
A QP+P + K ++ + TL G S + F LA + D IK+
Sbjct: 15 ARAQPTPSSSATQSKPTPVKPNYALKFTLA-GHTKAVSSVKFSPNGEWLASSSADKLIKI 73
Query: 69 IGG-DNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESN 126
G D +S +L + + + LVS S +++WD+ + + TL SN
Sbjct: 74 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 132
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Query: 9 ATKQPSPPRQNDEIKENLTSKDFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKV 68
A QP+P + K ++ + TL G S + F LA + D IK+
Sbjct: 13 ARAQPTPSSSATQSKPTPVKPNYALKFTLA-GHTKAVSSVKFSPNGEWLASSSADKLIKI 71
Query: 69 IGG-DNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESN 126
G D +S +L + + + LVS S +++WD+ + + TL SN
Sbjct: 72 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 130
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 302 EKEISSLCWASNDGSVLAVGYVDGDILLWNL 332
++ +SL W S +AVG GDI+LWN
Sbjct: 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNF 149
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 302 EKEISSLCWASNDGSVLAVGYVDGDILLWNL 332
++ +SL W S +AVG GDI+LWN
Sbjct: 120 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNF 150
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 302 EKEISSLCWASNDGSVLAVGYVDGDILLWNL 332
++ +SL W S +AVG GDI+LWN
Sbjct: 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNF 149
>pdb|4B93|A Chain A, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat
Domain Of Varp
Length = 189
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 1110 DKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRM 1147
D +A+RGE+LE+L ++TE L + + F + LA+ M
Sbjct: 146 DLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAM 183
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 299 EQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENS---STDFGKLQL 355
EQ + ISS+ W +G+ LAVG ++ LW+++ ++ S ++ S + L
Sbjct: 64 EQPGEYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYIL 122
Query: 356 SSGNR 360
SSG+R
Sbjct: 123 SSGSR 127
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 56 LLAIGTQDGRIKVIGGDNIEGLLV-SPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA 114
LA G +D I++ +N + +++ + L++ + LVS S +++WDL
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 115 RRITSTLPWESNITAFSVIFGTS-YMYIGDEYGMVYVLKYDTEEGKLI 161
+ + TL E +T +V G Y+ G V V +D+E G L+
Sbjct: 197 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV--WDSETGFLV 242
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 13/122 (10%)
Query: 6 FKKATKQPSPPRQNDEIKENLTSKDFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGR 65
F+ +P+P + N +K L G S + F LA + D
Sbjct: 16 FQGTQSKPTPVKPNYALKFTLA------------GHTKAVSSVKFSPNGEWLASSSADKL 63
Query: 66 IKVIGG-DNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE 124
IK+ G D +S +L + + + LVS S +++WD+ + + TL
Sbjct: 64 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 123
Query: 125 SN 126
SN
Sbjct: 124 SN 125
>pdb|3B5N|A Chain A, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|E Chain E, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|I Chain I, Structure Of The Yeast Plasma Membrane Snare Complex
Length = 61
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 1095 KSEVQGTXXXXXXXKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRM 1147
++E+ T +K+AERGE+L + ++ + L AQ F A + K M
Sbjct: 8 QAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAM 60
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
Query: 266 LVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGS-------VL 318
+V GS+D +K V DP + + V++ E V+ E CW G+ V+
Sbjct: 132 IVTGSRDGTVK---VWDPRQK-----DDPVANMEPVQGENKRDCWTVAFGNAYNQEERVV 183
Query: 319 AVGYVDGDILLWNLRAAA 336
GY +GDI L++LR A
Sbjct: 184 CAGYDNGDIKLFDLRNMA 201
>pdb|3EGJ|A Chain A, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae.
pdb|3EGJ|B Chain B, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae.
pdb|3IV8|A Chain A, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|B Chain B, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|C Chain C, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|D Chain D, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
Length = 381
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 72 DNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESNITAFS 131
D I + ++P+ +H+E L G +VSI N EAR+ +ES IT +
Sbjct: 164 DVIAKVTLAPENNKPEHIEKLVKAGIVVSIGHTNATY---SEARK-----SFESGITFAT 215
Query: 132 VIFGTSYMYIGDEYGMVYVLKYDTEE 157
+F +G E G+V + YDT E
Sbjct: 216 HLFNAMTPMVGREPGVVGAI-YDTPE 240
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 12 QPSPPRQNDEIKENLTSKDFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGG 71
+P+P + N +K L G S + F LA + D IK+ G
Sbjct: 5 KPTPVKPNYALKFTLA------------GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 52
Query: 72 -DNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESN 126
D +S +L + + + LVS S +++WD+ + + TL SN
Sbjct: 53 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 108
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 12 QPSPPRQNDEIKENLTSKDFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGG 71
+P+P + N +K L G S + F LA + D IK+ G
Sbjct: 1 KPTPVKPNYALKFTLA------------GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 48
Query: 72 -DNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESN 126
D +S +L + + + LVS S +++WD+ + + TL SN
Sbjct: 49 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 104
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 12 QPSPPRQNDEIKENLTSKDFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGG 71
+P+P + N +K L G S + F LA + D IK+ G
Sbjct: 5 KPTPVKPNYALKFTLA------------GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 52
Query: 72 -DNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESN 126
D +S +L + + + LVS S +++WD+ + + TL SN
Sbjct: 53 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 108
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 12 QPSPPRQNDEIKENLTSKDFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGG 71
+P+P + N +K L G S + F LA + D IK+ G
Sbjct: 6 KPTPVKPNYALKFTLA------------GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 53
Query: 72 -DNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESN 126
D +S +L + + + LVS S +++WD+ + + TL SN
Sbjct: 54 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 109
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 12 QPSPPRQNDEIKENLTSKDFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGG 71
+P+P + N +K L G S + F LA + D IK+ G
Sbjct: 10 KPTPVKPNYALKFTLA------------GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 57
Query: 72 -DNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESN 126
D +S +L + + + LVS S +++WD+ + + TL SN
Sbjct: 58 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 113
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 12 QPSPPRQNDEIKENLTSKDFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGG 71
+P+P + N +K L G S + F LA + D IK+ G
Sbjct: 11 KPTPVKPNYALKFTLA------------GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 58
Query: 72 -DNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESN 126
D +S +L + + + LVS S +++WD+ + + TL SN
Sbjct: 59 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 114
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 12 QPSPPRQNDEIKENLTSKDFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGG 71
+P+P + N +K L G S + F LA + D IK+ G
Sbjct: 11 KPTPVKPNYALKFTLA------------GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 58
Query: 72 -DNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESN 126
D +S +L + + + LVS S +++WD+ + + TL SN
Sbjct: 59 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 114
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 12 QPSPPRQNDEIKENLTSKDFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGG 71
+P+P + N +K L G S + F LA + D IK+ G
Sbjct: 11 KPTPVKPNYALKFTLA------------GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 58
Query: 72 -DNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESN 126
D +S +L + + + LVS S +++WD+ + + TL SN
Sbjct: 59 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 114
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 311 ASNDGSVLAVGYVDGDILLWNLRA 334
AS DG+++A DG+I+LWNL A
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAA 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,953,053
Number of Sequences: 62578
Number of extensions: 1356715
Number of successful extensions: 3235
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 3182
Number of HSP's gapped (non-prelim): 82
length of query: 1155
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1046
effective length of database: 8,152,335
effective search space: 8527342410
effective search space used: 8527342410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)