Query 001109
Match_columns 1155
No_of_seqs 558 out of 2964
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 16:04:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0319 WD40-repeat-containing 100.0 3.3E-40 7.2E-45 378.5 43.4 495 41-757 104-620 (775)
2 KOG0318 WD40 repeat stress pro 100.0 2.4E-39 5.3E-44 358.6 46.4 516 31-756 47-602 (603)
3 KOG0319 WD40-repeat-containing 100.0 1E-40 2.2E-45 382.7 36.2 513 40-776 60-597 (775)
4 KOG0271 Notchless-like WD40 re 100.0 9.6E-41 2.1E-45 356.8 29.2 376 28-754 96-479 (480)
5 KOG0291 WD40-repeat-containing 100.0 3.2E-35 7E-40 337.1 51.5 512 33-764 5-558 (893)
6 KOG0318 WD40 repeat stress pro 100.0 6.2E-34 1.3E-38 315.8 48.2 499 42-757 18-561 (603)
7 KOG0271 Notchless-like WD40 re 100.0 1.5E-36 3.3E-41 324.7 23.7 302 216-768 114-451 (480)
8 KOG0306 WD40-repeat-containing 100.0 3.8E-34 8.3E-39 328.2 41.6 493 40-776 63-642 (888)
9 KOG0291 WD40-repeat-containing 100.0 7.3E-33 1.6E-37 317.8 47.0 532 36-767 49-623 (893)
10 KOG0306 WD40-repeat-containing 100.0 4.6E-32 1E-36 311.1 39.5 514 39-756 104-664 (888)
11 KOG0272 U4/U6 small nuclear ri 100.0 8.5E-33 1.8E-37 300.4 22.8 282 81-687 173-458 (459)
12 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-31 6.2E-36 288.5 23.4 201 39-334 172-376 (459)
13 KOG0315 G-protein beta subunit 100.0 2.1E-29 4.5E-34 257.1 28.9 174 550-776 135-308 (311)
14 KOG0286 G-protein beta subunit 100.0 2.3E-28 5E-33 254.9 30.2 289 81-687 53-343 (343)
15 KOG1408 WD40 repeat protein [F 100.0 1.9E-26 4.1E-31 262.3 42.1 552 29-757 61-714 (1080)
16 KOG1983 Tomosyn and related SN 100.0 3.7E-27 8E-32 299.2 40.5 939 16-1155 9-993 (993)
17 KOG0273 Beta-transducin family 100.0 2.3E-27 5.1E-32 261.0 31.3 336 216-755 177-522 (524)
18 KOG0296 Angio-associated migra 100.0 8.3E-27 1.8E-31 250.0 34.3 343 32-689 54-398 (399)
19 KOG0315 G-protein beta subunit 100.0 4.7E-27 1E-31 240.0 28.8 184 55-334 11-198 (311)
20 KOG0279 G protein beta subunit 100.0 9.2E-27 2E-31 241.9 31.2 299 117-756 7-313 (315)
21 KOG0263 Transcription initiati 100.0 3.4E-28 7.3E-33 283.6 21.4 150 547-757 501-650 (707)
22 KOG0273 Beta-transducin family 100.0 1.5E-26 3.2E-31 254.7 32.7 332 39-689 175-523 (524)
23 KOG0286 G-protein beta subunit 100.0 1.1E-26 2.5E-31 242.4 30.2 214 25-334 39-260 (343)
24 KOG0292 Vesicle coat complex C 100.0 2.3E-25 5.1E-30 259.2 37.1 313 83-690 9-322 (1202)
25 KOG0296 Angio-associated migra 99.9 3.1E-25 6.8E-30 237.9 34.2 161 81-336 62-223 (399)
26 KOG0295 WD40 repeat-containing 99.9 2.7E-26 5.8E-31 245.9 25.0 326 54-688 76-405 (406)
27 KOG1539 WD repeat protein [Gen 99.9 1E-24 2.2E-29 254.0 40.1 466 45-754 162-646 (910)
28 KOG0279 G protein beta subunit 99.9 1.9E-25 4.1E-30 232.2 29.0 205 39-335 12-224 (315)
29 PLN00181 protein SPA1-RELATED; 99.9 8.1E-25 1.7E-29 281.1 39.9 154 550-755 629-792 (793)
30 KOG2106 Uncharacterized conser 99.9 1.1E-23 2.3E-28 233.3 42.0 406 39-756 101-521 (626)
31 KOG0285 Pleiotropic regulator 99.9 1.4E-25 3E-30 239.0 24.5 201 39-335 148-350 (460)
32 KOG1539 WD repeat protein [Gen 99.9 6.6E-24 1.4E-28 247.4 40.2 472 53-764 123-614 (910)
33 PLN00181 protein SPA1-RELATED; 99.9 2.5E-24 5.5E-29 276.5 37.7 199 40-334 481-691 (793)
34 KOG0292 Vesicle coat complex C 99.9 2.3E-24 5E-29 251.0 32.5 226 42-334 9-237 (1202)
35 KOG0263 Transcription initiati 99.9 2.7E-25 5.9E-30 259.4 23.7 238 43-402 379-649 (707)
36 KOG0645 WD40 repeat protein [G 99.9 6.8E-24 1.5E-28 219.8 30.9 205 37-333 9-225 (312)
37 KOG0276 Vesicle coat complex C 99.9 1.1E-23 2.5E-28 237.9 35.4 282 82-685 12-295 (794)
38 cd00200 WD40 WD40 domain, foun 99.9 2.1E-23 4.6E-28 230.6 35.5 283 39-687 6-289 (289)
39 KOG0284 Polyadenylation factor 99.9 2.5E-25 5.5E-30 241.2 17.4 281 224-755 98-379 (464)
40 KOG0276 Vesicle coat complex C 99.9 5.3E-23 1.1E-27 232.6 36.3 202 41-335 12-217 (794)
41 KOG0265 U5 snRNP-specific prot 99.9 9.5E-24 2.1E-28 221.5 27.9 202 37-334 42-247 (338)
42 KOG1408 WD40 repeat protein [F 99.9 7.2E-23 1.6E-27 233.4 37.2 572 44-768 39-683 (1080)
43 KOG2048 WD40 repeat protein [G 99.9 3.5E-21 7.6E-26 221.0 48.8 520 36-757 19-549 (691)
44 KOG1063 RNA polymerase II elon 99.9 1.3E-22 2.9E-27 232.5 36.8 550 48-781 20-677 (764)
45 KOG0282 mRNA splicing factor [ 99.9 7.3E-25 1.6E-29 242.6 17.7 171 29-335 199-374 (503)
46 KOG0266 WD40 repeat-containing 99.9 1.6E-23 3.5E-28 251.2 30.7 201 41-335 158-366 (456)
47 KOG0266 WD40 repeat-containing 99.9 2.4E-23 5.2E-28 249.7 31.8 154 546-756 295-454 (456)
48 cd00200 WD40 WD40 domain, foun 99.9 8.7E-23 1.9E-27 225.7 33.0 148 546-754 142-289 (289)
49 KOG0645 WD40 repeat protein [G 99.9 1.1E-22 2.4E-27 210.8 29.8 147 546-756 157-311 (312)
50 KOG1407 WD40 repeat protein [F 99.9 1.9E-23 4.1E-28 215.3 22.5 192 552-781 78-296 (313)
51 KOG0285 Pleiotropic regulator 99.9 3.9E-23 8.5E-28 220.5 24.7 160 81-335 149-309 (460)
52 KOG0284 Polyadenylation factor 99.9 7.2E-24 1.6E-28 230.0 18.7 285 83-623 96-381 (464)
53 KOG0295 WD40 repeat-containing 99.9 3E-23 6.6E-28 222.5 22.6 280 224-754 110-404 (406)
54 KOG0293 WD40 repeat-containing 99.9 2.4E-23 5.1E-28 225.7 21.9 201 39-335 221-427 (519)
55 KOG1063 RNA polymerase II elon 99.9 1.1E-21 2.4E-26 225.0 36.4 539 37-756 49-699 (764)
56 KOG0281 Beta-TrCP (transducin 99.9 5.1E-24 1.1E-28 225.9 15.0 144 551-758 330-479 (499)
57 KOG0265 U5 snRNP-specific prot 99.9 9E-22 1.9E-26 206.8 27.5 150 546-752 181-334 (338)
58 KOG0281 Beta-TrCP (transducin 99.9 2.4E-23 5.1E-28 220.9 15.6 192 43-336 198-391 (499)
59 KOG0310 Conserved WD40 repeat- 99.9 5.8E-22 1.3E-26 220.3 25.8 294 225-769 29-322 (487)
60 KOG0643 Translation initiation 99.9 1.7E-21 3.6E-26 201.5 25.7 214 36-337 4-224 (327)
61 KOG0293 WD40 repeat-containing 99.9 1.6E-21 3.5E-26 211.5 23.8 288 81-623 222-514 (519)
62 KOG0278 Serine/threonine kinas 99.9 5.5E-22 1.2E-26 202.9 18.2 200 39-334 11-214 (334)
63 KOG0282 mRNA splicing factor [ 99.9 4.1E-22 9E-27 220.9 17.5 285 224-754 216-503 (503)
64 KOG0268 Sof1-like rRNA process 99.9 2.5E-22 5.3E-27 215.1 15.0 209 2-334 50-260 (433)
65 KOG0313 Microtubule binding pr 99.9 1.6E-20 3.5E-25 202.7 28.6 149 546-755 267-417 (423)
66 KOG0641 WD40 repeat protein [G 99.9 3.6E-20 7.8E-25 186.6 28.6 155 550-756 193-349 (350)
67 KOG0316 Conserved WD40 repeat- 99.9 2.3E-20 5E-25 189.7 26.5 120 553-713 157-279 (307)
68 KOG0640 mRNA cleavage stimulat 99.9 5.6E-21 1.2E-25 200.5 22.3 210 38-337 108-339 (430)
69 KOG0313 Microtubule binding pr 99.9 2.4E-20 5.1E-25 201.4 25.5 220 40-335 103-332 (423)
70 PTZ00421 coronin; Provisional 99.9 2.1E-19 4.6E-24 215.3 33.8 168 552-778 139-313 (493)
71 KOG2048 WD40 repeat protein [G 99.9 2.6E-18 5.6E-23 197.6 40.9 429 83-760 25-509 (691)
72 KOG0316 Conserved WD40 repeat- 99.9 2.9E-20 6.3E-25 189.0 22.0 262 301-778 16-280 (307)
73 KOG0288 WD40 repeat protein Ti 99.9 4.2E-21 9.2E-26 209.0 15.3 145 553-753 314-458 (459)
74 KOG1407 WD40 repeat protein [F 99.9 2.5E-19 5.4E-24 185.1 26.2 107 590-747 187-293 (313)
75 KOG0643 Translation initiation 99.8 3.3E-19 7.2E-24 184.6 26.3 166 81-335 8-179 (327)
76 PTZ00420 coronin; Provisional 99.8 4.4E-19 9.6E-24 213.4 31.5 148 553-760 140-297 (568)
77 KOG0310 Conserved WD40 repeat- 99.8 1.4E-19 3E-24 201.5 24.7 299 66-623 11-310 (487)
78 KOG0772 Uncharacterized conser 99.8 5.4E-20 1.2E-24 204.6 21.3 167 546-764 275-453 (641)
79 KOG0275 Conserved WD40 repeat- 99.8 1.6E-20 3.5E-25 197.5 15.4 168 544-764 218-386 (508)
80 KOG0299 U3 snoRNP-associated p 99.8 5.5E-19 1.2E-23 195.3 27.1 203 35-335 135-358 (479)
81 KOG0772 Uncharacterized conser 99.8 2.4E-19 5.2E-24 199.5 24.4 152 546-754 324-485 (641)
82 KOG0275 Conserved WD40 repeat- 99.8 2.4E-20 5.2E-25 196.2 15.7 166 38-340 209-385 (508)
83 KOG0305 Anaphase promoting com 99.8 2.7E-19 5.8E-24 207.0 25.4 276 89-691 183-463 (484)
84 KOG0640 mRNA cleavage stimulat 99.8 4E-20 8.6E-25 194.2 16.7 165 546-765 179-344 (430)
85 KOG0274 Cdc4 and related F-box 99.8 3E-19 6.5E-24 214.2 26.6 272 243-764 219-490 (537)
86 KOG0283 WD40 repeat-containing 99.8 4.3E-20 9.3E-25 218.1 18.8 243 39-336 264-579 (712)
87 KOG0646 WD40 repeat protein [G 99.8 2.3E-19 4.9E-24 198.7 23.1 136 553-713 190-328 (476)
88 KOG0274 Cdc4 and related F-box 99.8 1.1E-18 2.3E-23 209.5 30.6 280 41-697 207-490 (537)
89 KOG2106 Uncharacterized conser 99.8 2.7E-17 5.9E-22 182.9 37.8 414 44-755 202-625 (626)
90 KOG0305 Anaphase promoting com 99.8 1.6E-18 3.4E-23 200.7 27.8 150 546-757 308-462 (484)
91 PTZ00421 coronin; Provisional 99.8 1.1E-18 2.5E-23 209.0 27.3 205 38-336 71-293 (493)
92 KOG0278 Serine/threonine kinas 99.8 3.4E-19 7.4E-24 182.5 18.4 287 217-760 14-301 (334)
93 KOG2096 WD40 repeat protein [G 99.8 7.1E-18 1.5E-22 178.2 28.5 165 81-332 84-257 (420)
94 KOG0277 Peroxisomal targeting 99.8 2.9E-19 6.2E-24 183.9 17.6 246 217-688 60-308 (311)
95 KOG0289 mRNA splicing factor [ 99.8 2.2E-18 4.8E-23 188.7 25.4 284 85-688 221-505 (506)
96 KOG0288 WD40 repeat protein Ti 99.8 1.6E-19 3.5E-24 196.8 15.2 197 39-334 172-372 (459)
97 KOG0277 Peroxisomal targeting 99.8 1.5E-18 3.2E-23 178.7 20.6 147 551-755 160-308 (311)
98 PTZ00420 coronin; Provisional 99.8 6.9E-18 1.5E-22 203.1 29.8 210 38-335 70-295 (568)
99 KOG0973 Histone transcription 99.8 3.1E-18 6.6E-23 207.1 25.7 330 43-625 14-358 (942)
100 KOG0300 WD40 repeat-containing 99.8 7.1E-18 1.5E-22 177.5 24.3 154 548-757 323-477 (481)
101 KOG0283 WD40 repeat-containing 99.8 2.5E-18 5.3E-23 203.4 23.3 210 419-757 367-577 (712)
102 KOG0299 U3 snoRNP-associated p 99.8 4.6E-18 9.9E-23 188.1 22.2 214 39-337 199-414 (479)
103 KOG1446 Histone H3 (Lys4) meth 99.8 4.3E-17 9.2E-22 173.8 28.7 163 547-764 108-270 (311)
104 KOG1963 WD40 repeat protein [G 99.8 3E-16 6.4E-21 186.3 36.7 551 40-767 14-594 (792)
105 KOG0308 Conserved WD40 repeat- 99.8 3.5E-18 7.5E-23 195.3 19.5 158 549-757 128-286 (735)
106 KOG0973 Histone transcription 99.8 1.2E-17 2.7E-22 201.9 24.8 176 546-757 136-356 (942)
107 KOG0294 WD40 repeat-containing 99.8 9.6E-18 2.1E-22 177.6 20.7 248 30-335 30-283 (362)
108 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 6.1E-16 1.3E-20 174.9 35.8 185 54-335 1-189 (300)
109 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 7E-16 1.5E-20 174.4 35.9 133 547-713 164-299 (300)
110 KOG1445 Tumor-specific antigen 99.8 4.8E-16 1E-20 176.1 33.4 163 546-759 586-753 (1012)
111 KOG0308 Conserved WD40 repeat- 99.8 1.9E-17 4.2E-22 189.3 21.8 207 47-338 29-248 (735)
112 KOG1036 Mitotic spindle checkp 99.8 1.7E-16 3.7E-21 168.3 27.0 195 42-333 13-207 (323)
113 KOG0289 mRNA splicing factor [ 99.8 8.2E-17 1.8E-21 176.6 25.0 149 546-755 354-505 (506)
114 PF08596 Lgl_C: Lethal giant l 99.8 7.1E-17 1.5E-21 187.6 25.5 292 594-944 3-326 (395)
115 KOG0301 Phospholipase A2-activ 99.8 1.1E-16 2.4E-21 184.5 25.5 158 553-782 114-271 (745)
116 KOG0300 WD40 repeat-containing 99.8 5.8E-17 1.3E-21 170.7 21.1 157 549-768 282-439 (481)
117 KOG0268 Sof1-like rRNA process 99.8 1.1E-17 2.3E-22 179.9 15.5 284 301-764 65-353 (433)
118 KOG0647 mRNA export protein (c 99.7 3.4E-16 7.4E-21 165.2 25.6 268 226-713 31-302 (347)
119 KOG1332 Vesicle coat complex C 99.7 6.5E-17 1.4E-21 165.9 19.6 264 301-762 10-293 (299)
120 KOG0647 mRNA export protein (c 99.7 2.8E-16 6.1E-21 165.8 24.4 277 41-386 26-311 (347)
121 KOG4283 Transcription-coupled 99.7 3.5E-16 7.6E-21 163.9 24.6 174 28-334 29-220 (397)
122 KOG2055 WD40 repeat protein [G 99.7 1.4E-16 3E-21 176.2 22.2 296 122-689 211-512 (514)
123 KOG1036 Mitotic spindle checkp 99.7 6.3E-16 1.4E-20 164.0 26.3 113 594-746 179-294 (323)
124 KOG0641 WD40 repeat protein [G 99.7 2E-15 4.4E-20 152.6 27.6 274 302-763 32-309 (350)
125 KOG1446 Histone H3 (Lys4) meth 99.7 2.5E-15 5.4E-20 160.4 29.8 252 31-337 4-266 (311)
126 KOG0294 WD40 repeat-containing 99.7 5E-16 1.1E-20 164.8 24.1 150 546-758 134-283 (362)
127 KOG0269 WD40 repeat-containing 99.7 8.3E-17 1.8E-21 187.4 19.5 233 243-689 101-340 (839)
128 KOG1332 Vesicle coat complex C 99.7 1.9E-16 4E-21 162.5 19.2 265 36-400 5-284 (299)
129 KOG0301 Phospholipase A2-activ 99.7 3.6E-16 7.9E-21 180.3 23.3 270 39-456 11-287 (745)
130 KOG2096 WD40 repeat protein [G 99.7 6.7E-16 1.5E-20 163.4 22.8 165 547-764 195-368 (420)
131 KOG0264 Nucleosome remodeling 99.7 5.6E-16 1.2E-20 172.0 20.4 281 216-690 123-405 (422)
132 KOG0650 WD40 repeat nucleolar 99.7 1.6E-15 3.5E-20 171.9 23.8 150 546-753 573-732 (733)
133 KOG1445 Tumor-specific antigen 99.7 7E-15 1.5E-19 166.8 28.3 118 37-156 74-200 (1012)
134 KOG0264 Nucleosome remodeling 99.7 1.4E-15 3E-20 169.0 21.8 149 551-756 240-404 (422)
135 KOG1274 WD40 repeat protein [G 99.7 1.7E-14 3.7E-19 171.4 29.7 173 546-769 103-281 (933)
136 KOG0639 Transducin-like enhanc 99.7 1.6E-15 3.4E-20 168.4 19.2 146 546-755 558-703 (705)
137 KOG0639 Transducin-like enhanc 99.7 2.1E-15 4.6E-20 167.4 19.0 166 546-778 516-682 (705)
138 COG2319 FOG: WD40 repeat [Gene 99.7 2.3E-12 4.9E-17 150.0 45.2 373 37-757 60-443 (466)
139 KOG4283 Transcription-coupled 99.7 1.6E-14 3.6E-19 151.5 23.6 317 216-755 42-364 (397)
140 KOG0267 Microtubule severing p 99.7 7.4E-17 1.6E-21 186.3 6.7 168 535-764 67-234 (825)
141 KOG2445 Nuclear pore complex c 99.7 2E-14 4.4E-19 152.2 23.9 161 552-756 127-318 (361)
142 KOG0646 WD40 repeat protein [G 99.7 3E-15 6.6E-20 166.3 18.3 217 39-339 78-313 (476)
143 KOG2055 WD40 repeat protein [G 99.6 1.6E-14 3.5E-19 160.0 23.8 294 40-457 209-512 (514)
144 KOG0321 WD40 repeat-containing 99.6 1.1E-14 2.5E-19 166.5 23.0 164 546-758 224-393 (720)
145 KOG0321 WD40 repeat-containing 99.6 2.4E-14 5.2E-19 163.9 24.9 237 38-334 45-302 (720)
146 KOG0860 Synaptobrevin/VAMP-lik 99.6 3.9E-16 8.5E-21 143.3 7.0 63 1083-1154 28-90 (116)
147 KOG2445 Nuclear pore complex c 99.6 2.2E-14 4.8E-19 151.9 20.3 273 37-333 8-318 (361)
148 KOG0302 Ribosome Assembly prot 99.6 1E-14 2.3E-19 157.9 17.6 150 553-757 226-379 (440)
149 KOG1274 WD40 repeat protein [G 99.6 1E-13 2.2E-18 165.0 27.1 254 34-402 5-262 (933)
150 KOG1538 Uncharacterized conser 99.6 3.5E-13 7.6E-18 153.9 30.2 174 84-372 13-187 (1081)
151 KOG4328 WD40 protein [Function 99.6 9.6E-14 2.1E-18 153.9 24.7 154 553-757 337-496 (498)
152 KOG0267 Microtubule severing p 99.6 8.1E-16 1.8E-20 177.9 8.6 192 38-324 66-259 (825)
153 KOG0322 G-protein beta subunit 99.6 1.4E-14 3E-19 150.4 16.3 155 553-755 167-322 (323)
154 KOG0269 WD40 repeat-containing 99.6 4.2E-15 9E-20 173.4 13.8 145 552-756 147-296 (839)
155 KOG0650 WD40 repeat nucleolar 99.6 8.2E-14 1.8E-18 158.3 22.7 201 39-333 397-637 (733)
156 KOG1273 WD40 repeat protein [G 99.6 2E-13 4.3E-18 144.8 23.4 160 546-757 160-323 (405)
157 KOG0270 WD40 repeat-containing 99.6 5.6E-14 1.2E-18 155.4 19.0 203 228-625 249-452 (463)
158 KOG0270 WD40 repeat-containing 99.6 8.2E-14 1.8E-18 154.2 19.8 192 53-337 191-408 (463)
159 KOG0322 G-protein beta subunit 99.6 9.8E-14 2.1E-18 144.2 17.3 73 81-155 12-86 (323)
160 KOG1034 Transcriptional repres 99.6 6.2E-13 1.3E-17 142.1 23.0 164 82-336 37-214 (385)
161 KOG1273 WD40 repeat protein [G 99.5 2.5E-13 5.3E-18 144.1 19.4 201 45-335 26-228 (405)
162 COG2319 FOG: WD40 repeat [Gene 99.5 4E-11 8.7E-16 139.5 40.3 336 81-764 63-408 (466)
163 KOG0302 Ribosome Assembly prot 99.5 1.5E-13 3.3E-18 149.0 17.7 231 32-402 140-378 (440)
164 KOG1034 Transcriptional repres 99.5 9.2E-13 2E-17 140.8 22.3 299 552-944 56-374 (385)
165 KOG2919 Guanine nucleotide-bin 99.5 5.8E-13 1.2E-17 141.9 20.6 165 546-763 165-335 (406)
166 KOG0859 Synaptobrevin/VAMP-lik 99.5 4.3E-15 9.3E-20 147.4 3.4 67 1079-1154 120-186 (217)
167 KOG1538 Uncharacterized conser 99.5 3.5E-12 7.7E-17 145.9 27.1 244 38-335 49-295 (1081)
168 KOG4378 Nuclear protein COP1 [ 99.5 4.2E-13 9.2E-18 149.3 18.5 205 37-335 29-241 (673)
169 KOG1517 Guanine nucleotide bin 99.5 2.4E-12 5.3E-17 154.3 26.0 168 85-334 1066-1240(1387)
170 KOG1240 Protein kinase contain 99.5 5.5E-12 1.2E-16 153.8 25.6 187 69-338 1034-1230(1431)
171 KOG1517 Guanine nucleotide bin 99.5 1.6E-11 3.4E-16 147.5 27.7 156 549-759 1219-1384(1387)
172 KOG2919 Guanine nucleotide-bin 99.5 7.5E-12 1.6E-16 133.5 21.7 202 46-334 53-282 (406)
173 KOG4328 WD40 protein [Function 99.5 1.6E-12 3.6E-17 144.3 17.3 206 39-333 183-399 (498)
174 KOG1963 WD40 repeat protein [G 99.4 2.4E-10 5.2E-15 136.7 36.4 206 37-337 52-326 (792)
175 KOG0307 Vesicle coat complex C 99.4 6.5E-13 1.4E-17 162.0 13.4 223 43-372 65-307 (1049)
176 KOG4227 WD40 repeat protein [G 99.4 1.4E-11 2.9E-16 133.7 21.0 115 39-153 53-178 (609)
177 KOG0771 Prolactin regulatory e 99.4 1.6E-12 3.6E-17 143.8 14.1 175 546-756 151-354 (398)
178 KOG0644 Uncharacterized conser 99.4 8.6E-13 1.9E-17 154.7 10.8 240 39-339 187-432 (1113)
179 PF00957 Synaptobrevin: Synapt 99.4 5.7E-13 1.2E-17 122.5 7.3 62 1084-1154 3-64 (89)
180 KOG4378 Nuclear protein COP1 [ 99.4 5.9E-12 1.3E-16 140.4 16.0 219 44-371 81-303 (673)
181 KOG0303 Actin-binding protein 99.4 3E-12 6.4E-17 139.7 13.0 148 588-779 77-228 (472)
182 KOG1007 WD repeat protein TSSC 99.4 1.1E-10 2.3E-15 123.1 23.5 130 546-689 221-361 (370)
183 KOG0642 Cell-cycle nuclear pro 99.4 8.1E-12 1.8E-16 142.2 16.1 256 31-337 284-565 (577)
184 KOG1587 Cytoplasmic dynein int 99.3 6.5E-11 1.4E-15 141.7 23.0 104 553-690 413-517 (555)
185 KOG0771 Prolactin regulatory e 99.3 1.3E-11 2.8E-16 136.8 15.2 199 46-334 148-355 (398)
186 KOG1009 Chromatin assembly com 99.3 2.1E-10 4.5E-15 126.3 24.3 171 83-334 13-196 (434)
187 KOG1188 WD40 repeat protein [G 99.3 5.7E-11 1.2E-15 128.1 19.5 194 55-337 41-246 (376)
188 PRK11028 6-phosphogluconolacto 99.3 6.8E-10 1.5E-14 128.5 29.7 214 41-335 33-260 (330)
189 KOG1587 Cytoplasmic dynein int 99.3 4.4E-10 9.5E-15 134.6 26.7 155 551-757 360-517 (555)
190 KOG1240 Protein kinase contain 99.3 3.9E-10 8.4E-15 138.1 25.2 284 301-694 1047-1339(1431)
191 KOG2394 WD40 protein DMR-N9 [G 99.3 4.8E-10 1E-14 126.9 23.0 141 594-762 292-458 (636)
192 PRK01742 tolB translocation pr 99.3 2.5E-10 5.4E-15 136.8 22.3 196 39-334 200-402 (429)
193 KOG1009 Chromatin assembly com 99.3 4.9E-11 1.1E-15 131.2 14.5 134 593-765 14-162 (434)
194 KOG0642 Cell-cycle nuclear pro 99.2 8.9E-11 1.9E-15 133.9 15.9 193 546-769 351-574 (577)
195 KOG4227 WD40 repeat protein [G 99.2 6.7E-10 1.5E-14 120.7 21.4 166 81-336 54-228 (609)
196 KOG1524 WD40 repeat-containing 99.2 2.6E-10 5.7E-15 128.5 18.3 94 546-689 193-286 (737)
197 KOG0307 Vesicle coat complex C 99.2 2.4E-11 5.3E-16 148.5 10.8 207 39-337 113-331 (1049)
198 KOG0303 Actin-binding protein 99.2 3.3E-10 7.2E-15 124.0 17.9 129 31-161 70-208 (472)
199 PRK11028 6-phosphogluconolacto 99.2 1.6E-09 3.4E-14 125.5 24.8 210 42-334 79-305 (330)
200 KOG0290 Conserved WD40 repeat- 99.2 8.1E-10 1.8E-14 116.7 19.7 231 39-371 93-345 (364)
201 KOG1188 WD40 repeat protein [G 99.2 4.5E-10 9.7E-15 121.3 17.7 155 553-763 86-249 (376)
202 KOG1912 WD40 repeat protein [G 99.2 2E-08 4.2E-13 118.0 32.1 112 41-152 54-184 (1062)
203 KOG4497 Uncharacterized conser 99.2 1.5E-09 3.2E-14 116.3 21.2 110 47-157 13-125 (447)
204 KOG0649 WD40 repeat protein [G 99.2 2.4E-09 5.2E-14 110.5 21.9 168 87-339 14-192 (325)
205 KOG2111 Uncharacterized conser 99.2 4.1E-08 8.8E-13 105.7 30.3 123 551-683 193-316 (346)
206 PRK03629 tolB translocation pr 99.2 3.3E-09 7.2E-14 127.0 25.0 200 40-335 196-408 (429)
207 KOG1007 WD repeat protein TSSC 99.2 6.2E-10 1.4E-14 117.4 15.9 227 40-332 121-360 (370)
208 KOG0644 Uncharacterized conser 99.1 1.5E-10 3.1E-15 136.4 11.5 158 81-333 188-346 (1113)
209 KOG0649 WD40 repeat protein [G 99.1 7.7E-09 1.7E-13 106.9 22.5 150 549-756 124-274 (325)
210 KOG1524 WD40 repeat-containing 99.1 1.1E-09 2.4E-14 123.6 17.8 128 546-715 111-238 (737)
211 KOG0290 Conserved WD40 repeat- 99.1 3.1E-09 6.8E-14 112.4 20.1 153 550-757 162-319 (364)
212 KOG2110 Uncharacterized conser 99.1 2E-09 4.4E-14 117.5 18.0 147 553-757 99-249 (391)
213 PRK01742 tolB translocation pr 99.1 5.2E-09 1.1E-13 125.5 21.7 176 63-336 183-364 (429)
214 KOG1523 Actin-related protein 99.1 6.2E-09 1.3E-13 111.8 19.3 220 41-335 9-238 (361)
215 KOG2321 WD40 repeat protein [G 99.1 2E-08 4.4E-13 114.8 24.4 293 39-456 48-342 (703)
216 PF02239 Cytochrom_D1: Cytochr 99.1 1.3E-07 2.8E-12 110.4 31.5 105 54-160 5-112 (369)
217 PF08662 eIF2A: Eukaryotic tra 99.1 8.2E-09 1.8E-13 109.6 19.6 117 593-765 60-187 (194)
218 PRK04922 tolB translocation pr 99.0 1.3E-08 2.8E-13 122.3 22.9 118 40-157 201-325 (433)
219 PRK05137 tolB translocation pr 99.0 2.9E-08 6.3E-13 119.4 24.6 119 39-157 198-323 (435)
220 KOG1310 WD40 repeat protein [G 99.0 2.2E-09 4.8E-14 121.5 13.1 238 38-338 46-308 (758)
221 PF04762 IKI3: IKI3 family; I 99.0 1.6E-05 3.4E-10 102.8 49.6 108 44-151 23-147 (928)
222 PRK02889 tolB translocation pr 98.9 5.2E-08 1.1E-12 116.8 22.5 117 40-157 193-317 (427)
223 KOG1334 WD40 repeat protein [G 98.9 1.3E-08 2.8E-13 114.5 15.6 326 301-761 141-471 (559)
224 KOG1272 WD40-repeat-containing 98.9 2E-09 4.3E-14 120.2 9.0 196 44-336 131-326 (545)
225 PF08662 eIF2A: Eukaryotic tra 98.9 1.9E-08 4.1E-13 106.9 16.0 112 41-155 58-180 (194)
226 PRK05137 tolB translocation pr 98.9 3.6E-07 7.7E-12 110.0 28.4 176 65-335 183-368 (435)
227 PRK03629 tolB translocation pr 98.9 3.1E-07 6.7E-12 110.1 27.6 177 65-336 180-366 (429)
228 PRK02889 tolB translocation pr 98.9 2.2E-07 4.8E-12 111.4 25.8 94 64-157 176-273 (427)
229 KOG1334 WD40 repeat protein [G 98.9 1.8E-08 4E-13 113.3 14.6 169 81-336 140-315 (559)
230 COG5354 Uncharacterized protei 98.9 1.2E-06 2.7E-11 99.5 29.1 110 41-153 31-159 (561)
231 KOG0974 WD-repeat protein WDR6 98.9 6.6E-06 1.4E-10 101.0 37.1 193 48-336 93-291 (967)
232 KOG2139 WD40 repeat protein [G 98.9 8.1E-08 1.8E-12 104.6 18.5 161 546-756 105-268 (445)
233 KOG1310 WD40 repeat protein [G 98.9 1.7E-08 3.6E-13 114.6 12.9 123 588-756 46-178 (758)
234 KOG2110 Uncharacterized conser 98.9 2.6E-08 5.7E-13 109.0 14.0 116 41-156 128-250 (391)
235 PF02239 Cytochrom_D1: Cytochr 98.9 1E-05 2.2E-10 94.6 36.3 88 653-765 263-356 (369)
236 KOG3881 Uncharacterized conser 98.8 4.7E-08 1E-12 107.7 15.4 173 550-775 160-339 (412)
237 KOG4497 Uncharacterized conser 98.8 3.3E-07 7.2E-12 98.6 20.9 102 44-145 50-154 (447)
238 TIGR02800 propeller_TolB tol-p 98.8 4.1E-07 8.9E-12 108.8 23.0 118 40-157 187-311 (417)
239 PRK04922 tolB translocation pr 98.8 5.5E-07 1.2E-11 108.2 23.7 178 64-336 184-371 (433)
240 KOG2111 Uncharacterized conser 98.7 7.1E-07 1.5E-11 96.3 19.8 180 64-337 75-260 (346)
241 PRK00178 tolB translocation pr 98.7 1.1E-06 2.4E-11 105.7 24.0 119 40-158 196-321 (430)
242 KOG2394 WD40 protein DMR-N9 [G 98.7 1.7E-07 3.6E-12 106.8 15.2 185 553-769 187-375 (636)
243 KOG3881 Uncharacterized conser 98.7 8.9E-07 1.9E-11 97.9 20.1 125 551-713 216-340 (412)
244 TIGR02800 propeller_TolB tol-p 98.7 3.2E-06 7E-11 101.1 27.0 176 65-335 171-356 (417)
245 PRK04792 tolB translocation pr 98.7 1.4E-06 2.9E-11 105.1 23.6 119 41-159 216-341 (448)
246 KOG2314 Translation initiation 98.7 6.7E-06 1.5E-10 94.3 27.1 104 45-151 213-331 (698)
247 KOG1064 RAVE (regulator of V-A 98.7 6.5E-08 1.4E-12 122.5 11.3 173 546-765 2215-2407(2439)
248 KOG1523 Actin-related protein 98.7 2.3E-07 5E-12 99.9 13.5 156 546-754 17-174 (361)
249 PF04762 IKI3: IKI3 family; I 98.6 0.0016 3.4E-08 84.7 50.1 66 43-110 76-147 (928)
250 KOG2321 WD40 repeat protein [G 98.6 5E-07 1.1E-11 103.6 15.9 196 46-336 137-346 (703)
251 KOG2139 WD40 repeat protein [G 98.6 9.2E-07 2E-11 96.6 16.1 184 43-322 99-299 (445)
252 KOG1912 WD40 repeat protein [G 98.6 1.2E-05 2.6E-10 95.3 26.2 108 606-761 439-556 (1062)
253 PRK01029 tolB translocation pr 98.6 5.5E-06 1.2E-10 99.1 23.9 199 43-336 185-406 (428)
254 KOG4547 WD40 repeat-containing 98.6 3.8E-06 8.3E-11 97.6 21.1 126 550-714 69-194 (541)
255 PRK04792 tolB translocation pr 98.6 1.2E-05 2.5E-10 97.1 26.4 95 65-159 199-297 (448)
256 KOG3914 WD repeat protein WDR4 98.6 8.1E-07 1.8E-11 98.8 14.3 162 546-765 69-232 (390)
257 KOG4547 WD40 repeat-containing 98.6 2.8E-06 6E-11 98.8 19.1 173 549-779 3-195 (541)
258 KOG1272 WD40-repeat-containing 98.5 1.6E-07 3.4E-12 105.3 8.3 169 546-764 136-331 (545)
259 PRK00178 tolB translocation pr 98.5 2.1E-05 4.6E-10 94.6 27.6 94 65-158 180-277 (430)
260 KOG2041 WD40 repeat protein [G 98.5 0.00014 3E-09 85.6 32.0 111 44-154 16-145 (1189)
261 KOG2315 Predicted translation 98.5 0.00011 2.4E-09 85.1 30.6 82 57-141 5-90 (566)
262 KOG0974 WD-repeat protein WDR6 98.5 1.4E-06 3.1E-11 106.6 16.2 155 549-762 97-251 (967)
263 KOG2315 Predicted translation 98.5 2.1E-05 4.5E-10 90.9 24.5 238 44-337 36-348 (566)
264 PF10282 Lactonase: Lactonase, 98.5 0.0001 2.3E-09 85.9 30.9 210 43-334 37-276 (345)
265 PF10282 Lactonase: Lactonase, 98.5 5.4E-05 1.2E-09 88.2 27.0 208 43-333 87-322 (345)
266 KOG4190 Uncharacterized conser 98.4 1.5E-06 3.2E-11 98.7 12.0 178 534-763 731-913 (1034)
267 KOG1354 Serine/threonine prote 98.4 3E-06 6.6E-11 92.1 13.6 219 43-334 26-302 (433)
268 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.0015 3.3E-08 75.1 36.3 126 599-764 200-338 (352)
269 KOG1354 Serine/threonine prote 98.4 6.6E-05 1.4E-09 82.0 23.0 134 546-693 220-363 (433)
270 PLN02919 haloacid dehalogenase 98.4 3.4E-05 7.4E-10 101.6 25.2 185 546-760 689-892 (1057)
271 PF15492 Nbas_N: Neuroblastoma 98.3 3.6E-05 7.9E-10 82.9 19.4 100 45-144 46-167 (282)
272 PLN02919 haloacid dehalogenase 98.3 0.00016 3.4E-09 95.4 28.8 230 44-336 625-891 (1057)
273 KOG3914 WD repeat protein WDR4 98.3 5.3E-06 1.2E-10 92.4 12.8 159 45-267 65-230 (390)
274 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00031 6.8E-09 80.7 27.2 76 50-125 53-148 (352)
275 TIGR03300 assembly_YfgL outer 98.3 0.00043 9.4E-09 81.7 29.4 153 553-766 192-348 (377)
276 COG5143 SNC1 Synaptobrevin/VAM 98.3 1.6E-06 3.4E-11 88.3 7.1 63 1083-1154 128-190 (190)
277 PF00400 WD40: WD domain, G-be 98.3 2.2E-06 4.7E-11 65.5 6.3 37 651-687 3-39 (39)
278 TIGR03300 assembly_YfgL outer 98.3 0.0013 2.9E-08 77.5 33.0 103 54-160 65-167 (377)
279 KOG2041 WD40 repeat protein [G 98.3 8.5E-05 1.8E-09 87.3 21.6 135 122-334 12-146 (1189)
280 PRK01029 tolB translocation pr 98.2 4.1E-05 8.8E-10 91.7 18.9 159 546-760 237-407 (428)
281 KOG1409 Uncharacterized conser 98.2 2.5E-05 5.5E-10 85.2 14.2 174 549-757 34-271 (404)
282 PRK04043 tolB translocation pr 98.1 0.0003 6.5E-09 83.9 24.1 115 44-158 189-311 (419)
283 KOG0309 Conserved WD40 repeat- 98.1 1.3E-05 2.9E-10 94.3 11.0 113 553-690 216-340 (1081)
284 COG4946 Uncharacterized protei 98.1 0.00048 1E-08 78.1 22.6 118 38-155 355-478 (668)
285 KOG0861 SNARE protein YKT6, sy 98.1 5.8E-06 1.2E-10 81.5 6.7 60 1079-1143 131-191 (198)
286 COG2706 3-carboxymuconate cycl 98.1 0.00084 1.8E-08 74.7 23.9 116 46-161 92-228 (346)
287 KOG1409 Uncharacterized conser 98.1 6.6E-05 1.4E-09 82.1 14.8 202 40-335 66-272 (404)
288 COG2706 3-carboxymuconate cycl 98.1 0.0055 1.2E-07 68.4 29.4 211 40-334 37-275 (346)
289 COG4946 Uncharacterized protei 98.0 0.00061 1.3E-08 77.3 20.4 150 53-268 331-485 (668)
290 KOG2695 WD40 repeat protein [G 98.0 2.5E-05 5.3E-10 85.3 8.8 157 555-765 228-385 (425)
291 KOG2314 Translation initiation 97.9 0.0051 1.1E-07 71.4 27.4 109 593-749 446-560 (698)
292 COG5354 Uncharacterized protei 97.9 0.003 6.6E-08 72.7 24.9 111 592-757 274-396 (561)
293 KOG1064 RAVE (regulator of V-A 97.9 3E-05 6.5E-10 99.3 9.8 186 43-335 2209-2400(2439)
294 KOG0280 Uncharacterized conser 97.9 0.0019 4.2E-08 69.7 20.9 183 63-335 45-243 (339)
295 KOG4532 WD40-like repeat conta 97.9 0.00068 1.5E-08 72.0 17.0 128 594-763 160-289 (344)
296 COG5170 CDC55 Serine/threonine 97.8 7.8E-05 1.7E-09 80.1 10.0 221 43-336 27-312 (460)
297 PRK04043 tolB translocation pr 97.8 0.0063 1.4E-07 72.7 27.6 74 85-158 189-267 (419)
298 KOG0280 Uncharacterized conser 97.8 0.00029 6.3E-09 75.8 14.2 160 553-763 87-249 (339)
299 KOG4190 Uncharacterized conser 97.8 3.4E-05 7.4E-10 87.9 7.1 174 33-267 726-913 (1034)
300 KOG2066 Vacuolar assembly/sort 97.8 0.00034 7.4E-09 84.3 15.1 190 43-334 40-234 (846)
301 PF00400 WD40: WD domain, G-be 97.7 0.00011 2.3E-09 56.0 6.5 31 590-620 9-39 (39)
302 PF08450 SGL: SMP-30/Gluconola 97.6 0.019 4.1E-07 63.4 25.4 192 47-333 4-213 (246)
303 KOG4714 Nucleoporin [Nuclear s 97.6 0.00043 9.3E-09 73.3 10.2 164 32-261 80-255 (319)
304 KOG3621 WD40 repeat-containing 97.5 0.0015 3.3E-08 78.0 15.5 140 545-713 39-179 (726)
305 PF13360 PQQ_2: PQQ-like domai 97.5 0.0085 1.9E-07 65.4 20.8 107 52-161 34-145 (238)
306 KOG4532 WD40-like repeat conta 97.5 0.0047 1E-07 65.9 17.2 201 47-336 72-285 (344)
307 KOG0309 Conserved WD40 repeat- 97.5 0.0003 6.6E-09 83.3 8.8 123 35-157 107-235 (1081)
308 PRK11138 outer membrane biogen 97.5 0.055 1.2E-06 64.3 28.4 107 604-765 256-362 (394)
309 KOG2114 Vacuolar assembly/sort 97.5 0.0041 9E-08 75.7 18.2 106 49-155 30-156 (933)
310 KOG2066 Vacuolar assembly/sort 97.5 0.0037 8.1E-08 75.7 17.6 142 552-765 50-196 (846)
311 KOG1645 RING-finger-containing 97.4 0.0043 9.4E-08 69.6 16.2 93 23-116 175-269 (463)
312 PF15492 Nbas_N: Neuroblastoma 97.4 0.014 3E-07 63.5 19.5 192 546-764 50-267 (282)
313 KOG3617 WD40 and TPR repeat-co 97.4 0.011 2.3E-07 71.5 20.0 71 225-334 62-132 (1416)
314 KOG4714 Nucleoporin [Nuclear s 97.3 0.00063 1.4E-08 72.1 8.1 79 661-763 181-260 (319)
315 KOG3617 WD40 and TPR repeat-co 97.3 0.013 2.7E-07 71.0 19.2 315 546-917 22-389 (1416)
316 PF11768 DUF3312: Protein of u 97.2 0.0088 1.9E-07 70.9 17.3 75 592-693 259-333 (545)
317 KOG2695 WD40 repeat protein [G 97.2 0.00039 8.5E-09 76.2 5.8 114 42-155 252-377 (425)
318 KOG0882 Cyclophilin-related pe 97.2 0.0015 3.3E-08 73.9 10.2 183 552-764 21-239 (558)
319 PF11768 DUF3312: Protein of u 97.2 0.0011 2.4E-08 78.2 9.2 78 39-117 256-333 (545)
320 PF08450 SGL: SMP-30/Gluconola 97.2 0.1 2.3E-06 57.5 24.4 108 45-155 42-165 (246)
321 KOG1832 HIV-1 Vpr-binding prot 97.1 0.00039 8.4E-09 83.7 4.9 124 29-158 1089-1216(1516)
322 PF07433 DUF1513: Protein of u 97.1 0.05 1.1E-06 60.9 20.2 102 42-143 4-117 (305)
323 PF07433 DUF1513: Protein of u 97.0 0.037 8.1E-07 61.9 18.3 184 546-767 57-258 (305)
324 KOG3621 WD40 repeat-containing 97.0 0.0047 1E-07 74.0 11.5 223 592-873 33-262 (726)
325 PF13360 PQQ_2: PQQ-like domai 96.9 0.075 1.6E-06 57.9 19.7 96 63-161 2-99 (238)
326 PRK11138 outer membrane biogen 96.9 0.3 6.6E-06 58.0 26.1 101 54-159 120-226 (394)
327 KOG0882 Cyclophilin-related pe 96.8 0.0081 1.8E-07 68.3 11.3 220 39-339 6-237 (558)
328 smart00320 WD40 WD40 repeats. 96.8 0.0035 7.6E-08 45.5 5.6 36 652-687 5-40 (40)
329 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.064 1.4E-06 50.7 14.7 99 45-148 2-108 (111)
330 KOG1920 IkappaB kinase complex 96.7 0.86 1.9E-05 58.5 28.7 72 83-154 68-139 (1265)
331 KOG4640 Anaphase-promoting com 96.7 0.0061 1.3E-07 72.2 9.6 92 594-713 22-114 (665)
332 PF03178 CPSF_A: CPSF A subuni 96.7 0.15 3.3E-06 58.7 21.2 113 45-160 29-163 (321)
333 PRK02888 nitrous-oxide reducta 96.7 0.032 6.9E-07 67.8 15.4 108 48-155 198-352 (635)
334 PF08596 Lgl_C: Lethal giant l 96.6 0.29 6.2E-06 57.9 23.1 111 44-155 3-174 (395)
335 KOG2079 Vacuolar assembly/sort 96.4 0.056 1.2E-06 67.8 15.3 90 597-713 92-181 (1206)
336 PF00780 CNH: CNH domain; Int 96.3 1.5 3.3E-05 49.0 25.5 161 549-764 5-173 (275)
337 KOG0862 Synaptobrevin/VAMP-lik 96.3 0.0047 1E-07 64.3 4.5 65 1084-1153 134-198 (216)
338 KOG1920 IkappaB kinase complex 95.9 0.41 8.9E-06 61.3 19.7 67 43-109 69-135 (1265)
339 PF12894 Apc4_WD40: Anaphase-p 95.9 0.016 3.6E-07 46.1 5.1 38 35-72 4-41 (47)
340 PF06433 Me-amine-dh_H: Methyl 95.9 4.4 9.6E-05 46.3 26.5 94 64-160 17-130 (342)
341 PF06977 SdiA-regulated: SdiA- 95.9 1.3 2.9E-05 48.8 21.5 116 39-155 18-148 (248)
342 PF14783 BBS2_Mid: Ciliary BBS 95.8 0.42 9E-06 45.4 14.9 104 595-751 2-109 (111)
343 KOG1645 RING-finger-containing 95.7 0.048 1E-06 61.5 9.3 74 82-155 192-267 (463)
344 COG5170 CDC55 Serine/threonine 95.6 0.063 1.4E-06 58.5 9.7 139 589-768 169-322 (460)
345 COG3391 Uncharacterized conser 95.6 1.6 3.5E-05 51.6 22.6 110 43-152 74-188 (381)
346 KOG4640 Anaphase-promoting com 95.6 0.047 1E-06 65.0 9.4 92 41-133 19-114 (665)
347 KOG1275 PAB-dependent poly(A) 95.6 0.21 4.6E-06 61.8 14.9 145 92-331 184-340 (1118)
348 KOG2114 Vacuolar assembly/sort 95.6 0.49 1.1E-05 58.5 18.0 168 552-765 78-252 (933)
349 PF08553 VID27: VID27 cytoplas 95.5 0.53 1.1E-05 59.6 18.8 229 555-873 498-742 (794)
350 KOG1275 PAB-dependent poly(A) 95.4 0.11 2.3E-06 64.3 11.5 142 549-754 185-340 (1118)
351 COG5143 SNC1 Synaptobrevin/VAM 95.2 0.017 3.7E-07 59.4 3.8 53 1098-1154 103-155 (190)
352 KOG2079 Vacuolar assembly/sort 95.1 0.07 1.5E-06 67.0 9.1 100 53-154 98-203 (1206)
353 PF04841 Vps16_N: Vps16, N-ter 95.0 3.4 7.3E-05 49.4 23.1 66 47-114 33-110 (410)
354 PF02897 Peptidase_S9_N: Proly 95.0 3.9 8.5E-05 48.8 23.9 130 28-157 109-261 (414)
355 smart00320 WD40 WD40 repeats. 95.0 0.035 7.6E-07 39.9 4.1 31 590-620 10-40 (40)
356 COG0823 TolB Periplasmic compo 94.8 0.37 8.1E-06 57.5 14.1 114 45-158 195-316 (425)
357 COG3386 Gluconolactonase [Carb 94.5 5.2 0.00011 45.7 21.8 127 49-188 31-176 (307)
358 PF00780 CNH: CNH domain; Int 94.5 1.3 2.8E-05 49.7 16.9 103 51-156 4-124 (275)
359 KOG1832 HIV-1 Vpr-binding prot 94.5 0.036 7.9E-07 67.6 4.4 89 651-764 1093-1184(1516)
360 PF12894 Apc4_WD40: Anaphase-p 94.0 0.12 2.5E-06 41.3 5.0 32 658-689 10-41 (47)
361 PF08553 VID27: VID27 cytoplas 93.9 1.5 3.1E-05 55.8 17.0 53 102-156 501-560 (794)
362 KOG1008 Uncharacterized conser 93.5 0.021 4.6E-07 67.7 0.0 108 44-151 58-181 (783)
363 PF06433 Me-amine-dh_H: Methyl 93.4 15 0.00033 42.0 22.4 111 45-157 97-216 (342)
364 PF04053 Coatomer_WDAD: Coatom 93.3 3.4 7.4E-05 49.6 18.1 59 95-156 117-175 (443)
365 PRK02888 nitrous-oxide reducta 93.2 0.95 2.1E-05 55.5 13.3 113 43-155 235-405 (635)
366 KOG2395 Protein involved in va 93.0 1.4 3E-05 52.0 13.4 145 553-755 348-499 (644)
367 KOG2444 WD40 repeat protein [G 92.9 0.28 6.2E-06 52.0 7.3 106 603-756 69-177 (238)
368 PRK13616 lipoprotein LpqB; Pro 92.9 1.4 3.1E-05 54.9 14.6 103 43-150 350-472 (591)
369 COG3391 Uncharacterized conser 92.9 7.7 0.00017 45.9 20.3 115 44-159 117-242 (381)
370 PRK13616 lipoprotein LpqB; Pro 92.8 1.4 3.1E-05 54.9 14.4 155 546-754 356-523 (591)
371 PF04053 Coatomer_WDAD: Coatom 92.5 5.3 0.00012 48.0 18.3 101 44-155 34-135 (443)
372 cd00216 PQQ_DH Dehydrogenases 92.4 4.5 9.7E-05 49.6 18.0 31 737-767 405-435 (488)
373 PF10395 Utp8: Utp8 family; I 92.3 14 0.00031 45.9 21.5 100 838-944 193-305 (670)
374 COG3204 Uncharacterized protei 92.3 4.5 9.8E-05 44.9 15.5 177 83-334 85-264 (316)
375 cd00216 PQQ_DH Dehydrogenases 92.0 7.4 0.00016 47.7 19.2 88 664-766 221-329 (488)
376 KOG4499 Ca2+-binding protein R 91.9 10 0.00022 40.7 16.9 89 54-143 27-126 (310)
377 PF10647 Gmad1: Lipoprotein Lp 91.6 5.6 0.00012 44.2 16.0 132 546-713 30-174 (253)
378 PF03178 CPSF_A: CPSF A subuni 91.4 1.8 3.9E-05 49.9 12.4 121 31-156 77-204 (321)
379 PF06977 SdiA-regulated: SdiA- 91.4 7.4 0.00016 43.0 16.4 174 84-333 22-201 (248)
380 KOG4649 PQQ (pyrrolo-quinoline 90.9 3.5 7.5E-05 44.7 12.5 104 48-152 16-121 (354)
381 KOG4649 PQQ (pyrrolo-quinoline 90.9 14 0.00031 40.1 17.0 111 551-699 23-133 (354)
382 COG0823 TolB Periplasmic compo 90.7 5.5 0.00012 47.7 15.8 77 83-159 192-273 (425)
383 KOG2444 WD40 repeat protein [G 90.6 0.66 1.4E-05 49.3 6.9 102 54-155 70-178 (238)
384 PF14655 RAB3GAP2_N: Rab3 GTPa 90.5 2.4 5.1E-05 50.3 12.2 98 597-715 6-119 (415)
385 PF04841 Vps16_N: Vps16, N-ter 90.3 29 0.00062 41.5 21.4 66 546-624 35-111 (410)
386 COG3490 Uncharacterized protei 89.5 14 0.0003 40.9 15.7 54 49-102 120-180 (366)
387 PF10168 Nup88: Nuclear pore c 89.0 46 0.001 42.6 22.6 179 592-781 84-295 (717)
388 COG3386 Gluconolactonase [Carb 88.9 4.9 0.00011 45.9 12.8 110 596-748 166-277 (307)
389 KOG1008 Uncharacterized conser 88.4 0.67 1.4E-05 55.6 5.5 122 560-716 128-255 (783)
390 PF08366 LLGL: LLGL2; InterPr 88.3 3.9 8.5E-05 38.6 9.4 53 393-457 45-100 (105)
391 PF14655 RAB3GAP2_N: Rab3 GTPa 87.8 5.7 0.00012 47.1 12.8 109 652-766 300-408 (415)
392 PF08728 CRT10: CRT10; InterP 87.6 12 0.00026 47.0 15.8 181 546-755 45-245 (717)
393 PF00930 DPPIV_N: Dipeptidyl p 87.6 1.8 3.9E-05 50.6 8.6 91 51-142 1-118 (353)
394 PF07569 Hira: TUP1-like enhan 87.5 3.3 7.1E-05 44.9 9.9 70 91-161 18-102 (219)
395 COG3490 Uncharacterized protei 87.2 6.9 0.00015 43.1 11.7 66 546-623 120-191 (366)
396 KOG1897 Damage-specific DNA bi 86.6 1.1E+02 0.0024 39.5 52.9 117 41-157 56-201 (1096)
397 PF10313 DUF2415: Uncharacteri 86.3 2.2 4.7E-05 33.2 5.4 31 660-690 1-34 (43)
398 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.1 17 0.00038 44.9 16.4 33 737-769 471-503 (527)
399 PF10647 Gmad1: Lipoprotein Lp 85.7 11 0.00023 41.9 13.1 98 44-143 25-130 (253)
400 KOG1916 Nuclear protein, conta 85.5 1 2.2E-05 56.0 4.9 129 594-761 182-328 (1283)
401 PLN00033 photosystem II stabil 85.2 40 0.00086 40.1 18.0 103 44-150 240-352 (398)
402 PF14761 HPS3_N: Hermansky-Pud 84.7 14 0.00031 39.4 12.5 123 558-692 35-166 (215)
403 PF14870 PSII_BNR: Photosynthe 84.5 48 0.001 37.8 17.6 151 546-753 151-301 (302)
404 PF05096 Glu_cyclase_2: Glutam 84.4 61 0.0013 36.0 17.6 158 546-766 51-213 (264)
405 PF11715 Nup160: Nucleoporin N 83.4 4 8.6E-05 50.9 9.3 31 737-767 229-259 (547)
406 COG3204 Uncharacterized protei 83.3 67 0.0015 36.0 17.1 117 39-155 82-211 (316)
407 PF11715 Nup160: Nucleoporin N 83.0 5.9 0.00013 49.3 10.6 71 52-122 156-257 (547)
408 KOG2395 Protein involved in va 82.8 3 6.6E-05 49.3 7.1 66 45-112 433-499 (644)
409 PF14781 BBS2_N: Ciliary BBSom 82.4 42 0.0009 33.2 13.6 107 46-157 2-126 (136)
410 PF14870 PSII_BNR: Photosynthe 81.9 63 0.0014 36.9 17.1 139 593-781 145-286 (302)
411 PHA02713 hypothetical protein; 81.7 12 0.00025 46.8 12.4 24 736-759 511-536 (557)
412 PF05694 SBP56: 56kDa selenium 80.9 1.3E+02 0.0028 35.8 20.9 93 52-144 139-266 (461)
413 PF14781 BBS2_N: Ciliary BBSom 80.8 57 0.0012 32.3 13.9 125 598-764 4-133 (136)
414 PRK13684 Ycf48-like protein; P 80.8 65 0.0014 37.4 17.4 104 42-148 172-282 (334)
415 PF02897 Peptidase_S9_N: Proly 80.7 22 0.00047 42.4 14.0 112 594-758 125-262 (414)
416 PF08728 CRT10: CRT10; InterP 80.6 69 0.0015 40.6 18.1 102 54-156 49-197 (717)
417 PF05096 Glu_cyclase_2: Glutam 80.5 1E+02 0.0022 34.3 20.4 122 30-157 30-158 (264)
418 TIGR02604 Piru_Ver_Nterm putat 78.4 30 0.00064 40.7 13.8 96 43-140 14-139 (367)
419 PF01011 PQQ: PQQ enzyme repea 77.5 7.1 0.00015 29.4 5.4 30 740-769 2-31 (38)
420 PF07995 GSDH: Glucose / Sorbo 77.0 27 0.00058 40.5 12.7 101 44-146 3-134 (331)
421 PF00930 DPPIV_N: Dipeptidyl p 76.7 8.3 0.00018 45.1 8.5 34 659-693 42-75 (353)
422 PF10168 Nup88: Nuclear pore c 76.6 50 0.0011 42.3 15.8 78 660-757 85-180 (717)
423 PF12234 Rav1p_C: RAVE protein 76.2 25 0.00055 43.9 12.5 74 660-755 30-103 (631)
424 PRK13684 Ycf48-like protein; P 76.0 81 0.0017 36.6 16.3 113 593-755 215-330 (334)
425 PF07569 Hira: TUP1-like enhan 75.8 14 0.0003 40.1 9.2 66 48-114 16-96 (219)
426 KOG1916 Nuclear protein, conta 75.6 0.42 9.2E-06 59.1 -2.6 83 600-694 243-328 (1283)
427 PLN00033 photosystem II stabil 73.8 1.3E+02 0.0027 35.9 17.2 151 547-753 246-396 (398)
428 PF10313 DUF2415: Uncharacteri 72.9 8.5 0.00018 30.1 4.7 30 594-623 2-34 (43)
429 PF12657 TFIIIC_delta: Transcr 72.6 14 0.0003 38.5 8.0 36 706-757 87-122 (173)
430 PF13449 Phytase-like: Esteras 72.0 57 0.0012 37.7 13.8 104 42-146 19-168 (326)
431 PHA02713 hypothetical protein; 71.1 71 0.0015 39.9 15.2 65 549-624 302-377 (557)
432 KOG3630 Nuclear pore complex, 71.1 55 0.0012 42.8 13.6 70 46-115 45-134 (1405)
433 PRK10115 protease 2; Provision 70.7 40 0.00086 43.3 13.0 117 29-146 113-244 (686)
434 PF14727 PHTB1_N: PTHB1 N-term 70.6 2.4E+02 0.0052 33.8 29.0 119 549-692 35-166 (418)
435 TIGR03074 PQQ_membr_DH membran 70.5 1.9E+02 0.0041 37.5 18.9 28 740-767 461-488 (764)
436 KOG4499 Ca2+-binding protein R 70.2 51 0.0011 35.6 11.2 99 45-143 160-273 (310)
437 smart00564 PQQ beta-propeller 68.8 8.9 0.00019 27.5 4.0 26 739-764 7-32 (33)
438 TIGR02276 beta_rpt_yvtn 40-res 68.0 17 0.00038 27.4 5.8 40 93-132 1-41 (42)
439 KOG1897 Damage-specific DNA bi 66.6 4E+02 0.0087 34.9 44.0 110 594-756 831-942 (1096)
440 TIGR02604 Piru_Ver_Nterm putat 66.3 91 0.002 36.6 14.1 18 594-611 15-32 (367)
441 PHA02790 Kelch-like protein; P 66.0 83 0.0018 38.5 14.1 65 549-624 317-386 (480)
442 PF12768 Rax2: Cortical protei 65.8 66 0.0014 36.3 12.0 76 613-713 15-97 (281)
443 KOG4460 Nuclear pore complex, 65.7 84 0.0018 37.8 12.8 98 593-698 104-207 (741)
444 TIGR02276 beta_rpt_yvtn 40-res 65.1 24 0.00053 26.6 6.1 31 736-766 1-32 (42)
445 PF15390 DUF4613: Domain of un 64.6 90 0.0019 38.2 13.0 118 40-159 54-189 (671)
446 PHA03098 kelch-like protein; P 62.4 83 0.0018 39.0 13.5 65 549-624 341-416 (534)
447 TIGR03118 PEPCTERM_chp_1 conse 62.3 2.8E+02 0.0061 31.6 24.2 117 28-151 15-167 (336)
448 TIGR03075 PQQ_enz_alc_DH PQQ-d 62.0 52 0.0011 40.7 11.3 63 65-127 442-504 (527)
449 PF11635 Med16: Mediator compl 59.0 5.2E+02 0.011 33.6 21.7 38 658-695 258-295 (753)
450 PF14583 Pectate_lyase22: Olig 58.4 1.8E+02 0.0039 34.2 13.9 79 90-171 42-124 (386)
451 PF07995 GSDH: Glucose / Sorbo 58.4 1.1E+02 0.0023 35.5 12.5 26 594-620 3-28 (331)
452 KOG2377 Uncharacterized conser 57.8 1.1E+02 0.0025 36.1 11.9 97 592-713 66-162 (657)
453 COG5167 VID27 Protein involved 57.2 31 0.00066 41.0 7.4 58 55-113 574-632 (776)
454 PHA03098 kelch-like protein; P 56.7 1.1E+02 0.0025 37.8 13.3 65 549-624 293-368 (534)
455 TIGR03606 non_repeat_PQQ dehyd 56.6 1.5E+02 0.0033 35.8 13.5 55 39-94 27-89 (454)
456 PF12234 Rav1p_C: RAVE protein 55.8 97 0.0021 38.9 11.9 104 36-140 24-144 (631)
457 KOG4441 Proteins containing BT 55.3 2E+02 0.0044 36.0 14.9 158 549-769 331-512 (571)
458 KOG4460 Nuclear pore complex, 54.1 48 0.001 39.7 8.3 80 44-123 105-208 (741)
459 PF05935 Arylsulfotrans: Aryls 53.0 2.9E+02 0.0063 33.8 15.6 52 89-143 153-208 (477)
460 PF14761 HPS3_N: Hermansky-Pud 52.4 39 0.00084 36.2 6.8 48 96-143 29-78 (215)
461 KOG3630 Nuclear pore complex, 52.4 44 0.00095 43.6 8.2 69 228-334 161-229 (1405)
462 KOG2280 Vacuolar assembly/sort 50.1 3E+02 0.0065 34.9 14.5 74 883-961 225-302 (829)
463 PF12768 Rax2: Cortical protei 49.2 1.5E+02 0.0032 33.6 11.2 92 65-157 17-124 (281)
464 PF05694 SBP56: 56kDa selenium 47.9 2.7E+02 0.0059 33.3 13.2 40 658-697 310-353 (461)
465 PF10979 DUF2786: Protein of u 47.2 17 0.00037 28.5 2.4 38 1110-1147 1-38 (43)
466 PF07676 PD40: WD40-like Beta 46.6 57 0.0012 24.3 5.3 24 657-680 6-29 (39)
467 TIGR03606 non_repeat_PQQ dehyd 45.9 3.7E+02 0.008 32.6 14.4 55 546-604 36-90 (454)
468 PHA02790 Kelch-like protein; P 44.8 4.3E+02 0.0093 32.3 15.4 64 549-623 270-340 (480)
469 PF12657 TFIIIC_delta: Transcr 44.4 94 0.002 32.2 8.3 30 85-114 87-122 (173)
470 KOG1896 mRNA cleavage and poly 42.5 4E+02 0.0086 35.7 14.4 100 55-157 1047-1169(1366)
471 PF00957 Synaptobrevin: Synapt 42.4 1.2E+02 0.0025 27.7 7.6 40 1100-1139 21-60 (89)
472 PF02333 Phytase: Phytase; In 41.1 6.7E+02 0.015 29.6 17.2 98 57-156 116-237 (381)
473 PF01436 NHL: NHL repeat; Int 40.9 55 0.0012 22.9 4.0 25 45-69 4-28 (28)
474 PF04799 Fzo_mitofusin: fzo-li 40.3 1.6E+02 0.0034 30.6 8.6 58 1084-1146 109-166 (171)
475 PF07250 Glyoxal_oxid_N: Glyox 39.7 4.4E+02 0.0094 29.1 12.7 149 565-768 50-209 (243)
476 KOG2280 Vacuolar assembly/sort 39.2 5.3E+02 0.011 32.8 14.2 42 658-699 215-256 (829)
477 KOG4441 Proteins containing BT 36.9 5.2E+02 0.011 32.5 14.5 160 549-769 283-465 (571)
478 PRK13615 lipoprotein LpqB; Pro 36.3 2.7E+02 0.0058 34.7 11.5 94 46-142 337-434 (557)
479 KOG2377 Uncharacterized conser 35.9 1.5E+02 0.0033 35.1 8.5 102 41-144 65-173 (657)
480 KOG1898 Splicing factor 3b, su 35.9 3.6E+02 0.0078 35.5 12.4 112 45-161 880-1011(1205)
481 PF14779 BBS1: Ciliary BBSome 35.8 2E+02 0.0043 31.9 9.3 74 658-753 175-255 (257)
482 TIGR03032 conserved hypothetic 35.0 2.3E+02 0.005 32.3 9.7 70 63-136 222-316 (335)
483 TIGR03074 PQQ_membr_DH membran 34.5 3.8E+02 0.0082 34.9 12.9 70 54-123 194-288 (764)
484 COG3823 Glutamine cyclotransfe 33.4 5.1E+02 0.011 27.9 11.1 76 668-767 137-215 (262)
485 PF10214 Rrn6: RNA polymerase 33.2 1.2E+03 0.027 30.3 18.7 216 50-335 1-234 (765)
486 KOG3616 Selective LIM binding 32.7 70 0.0015 39.7 5.5 66 661-756 16-83 (1636)
487 PF13449 Phytase-like: Esteras 32.5 6.5E+02 0.014 28.9 13.6 123 594-748 21-168 (326)
488 PRK13615 lipoprotein LpqB; Pro 31.9 1.1E+03 0.024 29.4 16.2 130 546-713 340-478 (557)
489 KOG1900 Nuclear pore complex, 31.1 6.9E+02 0.015 33.9 14.2 25 733-757 249-273 (1311)
490 COG1520 FOG: WD40-like repeat 30.5 9.2E+02 0.02 28.1 16.1 159 551-768 68-229 (370)
491 COG4590 ABC-type uncharacteriz 30.2 2.6E+02 0.0056 33.2 9.1 165 84-341 221-394 (733)
492 KOG3616 Selective LIM binding 29.5 93 0.002 38.7 5.8 94 43-139 15-112 (1636)
493 TIGR03547 muta_rot_YjhT mutatr 28.6 8.4E+02 0.018 28.0 13.8 13 668-680 255-267 (346)
494 KOG2247 WD40 repeat-containing 28.4 15 0.00032 43.4 -0.8 101 553-690 89-189 (615)
495 PRK10115 protease 2; Provision 28.0 2.3E+02 0.005 36.4 9.5 71 661-758 128-209 (686)
496 PF12341 DUF3639: Protein of u 27.6 1.1E+02 0.0023 21.6 3.5 25 44-70 3-27 (27)
497 KOG1983 Tomosyn and related SN 27.6 4.7E+02 0.01 35.2 12.4 75 656-761 195-269 (993)
498 PF05739 SNARE: SNARE domain; 27.1 3.7E+02 0.0079 22.4 8.6 43 1085-1132 5-47 (63)
499 PF13570 PQQ_3: PQQ-like domai 26.7 90 0.0019 23.5 3.5 21 737-757 20-40 (40)
500 PLN02193 nitrile-specifier pro 26.4 1.2E+03 0.027 28.2 16.1 24 670-693 328-355 (470)
No 1
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-40 Score=378.49 Aligned_cols=495 Identities=18% Similarity=0.198 Sum_probs=355.3
Q ss_pred CCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcC-CCCCEEEEEEEcCCcE--EEEEecCCeEEEEECCCCce
Q 001109 41 IPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSP-KQLAFKHLEFLQNQGF--LVSISSGNEIQLWDLEARRI 117 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~-~~~~V~~l~Fs~dg~~--LvS~s~Dg~I~vWDl~t~~~ 117 (1155)
|.++|..++|+|.|.+||+|+.||.|+|||..+..++..+. |.+.|..+.|.|+..+ |+++..|+++++||+.+++.
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t 183 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT 183 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch
Confidence 88999999999999999999999999999999999988774 5889999999998654 78899999999999996654
Q ss_pred -eeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccc
Q 001109 118 -TSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAA 195 (1155)
Q Consensus 118 -~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~ 195 (1155)
++++..| +.|++++|++|+..+++++.|..+.||++..-+ ++.
T Consensus 184 cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~-~l~---------------------------------- 228 (775)
T KOG0319|consen 184 CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYK-KLK---------------------------------- 228 (775)
T ss_pred HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhh-hhh----------------------------------
Confidence 7777777 899999999999999999999999999872211 110
Q ss_pred cccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccccc
Q 001109 196 FNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQL 275 (1155)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~ 275 (1155)
..++.. .++++.+-++..+.. ..++.+++++|.+++||..+++++..+.-.+
T Consensus 229 ---------------------~lp~ye-~~E~vv~l~~~~~~~---~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~--- 280 (775)
T KOG0319|consen 229 ---------------------TLPLYE-SLESVVRLREELGGK---GEYIITAGGSGVVQYWDSESGKCVYKQRQSD--- 280 (775)
T ss_pred ---------------------eechhh-heeeEEEechhcCCc---ceEEEEecCCceEEEEecccchhhhhhccCC---
Confidence 001111 233355555422100 1479999999999999998887654311100
Q ss_pred ccccccCCCC-CCCCC---Cccc---cc---------ccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCcc
Q 001109 276 KTEIVDDPSK-NAGHN---LSET---VS---------DNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTK 339 (1155)
Q Consensus 276 ~~~~~~~~~~-~~~~~---~~~~---~~---------~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~ 339 (1155)
..++...... ..+.. ..++ .+ .--+...+|..++|-.|+.++||++++.+.+|+++.++..+..
T Consensus 281 ~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~i 360 (775)
T KOG0319|consen 281 SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQI 360 (775)
T ss_pred chhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEE
Confidence 0001000000 00000 0000 00 0003457899999987889999999999999999888765421
Q ss_pred ccccCCCCCCcccccccCCCCCccEEEEE-ecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeee
Q 001109 340 DWKSENSSTDFGKLQLSSGNRRLPVITLH-WSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDL 418 (1155)
Q Consensus 340 ~~~~~~~~~~i~kl~l~~~~~~~pI~~l~-w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l 418 (1155)
..+|...|.++. | ..|-++++++.| +.+.+|.++-.... .-|. ....
T Consensus 361 -----------------i~GH~e~vlSL~~~--------~~g~llat~sKD----~svilWr~~~~~~~--~~~~-a~~~ 408 (775)
T KOG0319|consen 361 -----------------IPGHTEAVLSLDVW--------SSGDLLATGSKD----KSVILWRLNNNCSK--SLCV-AQAN 408 (775)
T ss_pred -----------------EeCchhheeeeeec--------ccCcEEEEecCC----ceEEEEEecCCcch--hhhh-hhhc
Confidence 236778888885 3 345688888886 78888877432211 1111 1123
Q ss_pred cCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecC
Q 001109 419 ERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCR 498 (1155)
Q Consensus 419 ~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~ 498 (1155)
.|...+..+... ......++.++.|+++.+|+... +. +... +......++...|+..|+|
T Consensus 409 gH~~svgava~~-----~~~asffvsvS~D~tlK~W~l~~-----s~-~~~~-~~~~~~~~t~~aHdKdIN~-------- 468 (775)
T KOG0319|consen 409 GHTNSVGAVAGS-----KLGASFFVSVSQDCTLKLWDLPK-----SK-ETAF-PIVLTCRYTERAHDKDINC-------- 468 (775)
T ss_pred ccccccceeeec-----ccCccEEEEecCCceEEEecCCC-----cc-cccc-cceehhhHHHHhhcccccc--------
Confidence 344444444431 12345788889999999999752 00 0000 0000111122223333222
Q ss_pred CCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeee
Q 001109 499 DGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHV 578 (1155)
Q Consensus 499 ~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~ 578 (1155)
+ +++|+..++||||+|+++++|++... ..+.+
T Consensus 469 ---------------------------------------------V-aia~ndkLiAT~SqDktaKiW~le~~--~l~~v 500 (775)
T KOG0319|consen 469 ---------------------------------------------V-AIAPNDKLIATGSQDKTAKIWDLEQL--RLLGV 500 (775)
T ss_pred ---------------------------------------------e-EecCCCceEEecccccceeeecccCc--eEEEE
Confidence 2 66788889999999999999999843 34455
Q ss_pred eCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecC
Q 001109 579 FGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVL 658 (1155)
Q Consensus 579 l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h 658 (1155)
+. ||+..|++|.|+|..+.||+++.|++|+||.+.+ +.|..+|.||
T Consensus 501 Ls---------GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-------------------------fSClkT~eGH 546 (775)
T KOG0319|consen 501 LS---------GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-------------------------FSCLKTFEGH 546 (775)
T ss_pred ee---------CCccceEEEEeccccceeEeccCCceEEEEEecc-------------------------ceeeeeecCc
Confidence 54 8999999999999999999999999999999987 3467899999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCC
Q 001109 659 NSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKK 738 (1155)
Q Consensus 659 ~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~ 738 (1155)
+..|.-++|-.+|+.|++++.||.|+||++.++.|+.+. .+|.+.|++|+-+ |.+
T Consensus 547 ~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl---D~H~DrvWaL~~~----------------------~~~ 601 (775)
T KOG0319|consen 547 TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL---DAHNDRVWALSVS----------------------PLL 601 (775)
T ss_pred cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh---hhccceeEEEeec----------------------Ccc
Confidence 999999999999999999999999999999999998754 5699999999998 677
Q ss_pred cEEEEEeCCceEEEEECCC
Q 001109 739 ETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 739 ~~L~s~s~Dg~I~vwd~~t 757 (1155)
.++++|+.||.|.+|--.|
T Consensus 602 ~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 602 DMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred ceeEecCCCeEEEEeecCc
Confidence 7899999999999997554
No 2
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-39 Score=358.62 Aligned_cols=516 Identities=14% Similarity=0.160 Sum_probs=353.2
Q ss_pred CCcceeecc-CCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcC---CCCCEEEEEEEcCCcEEEEEecC--
Q 001109 31 FDPRVTLHY-GIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSP---KQLAFKHLEFLQNQGFLVSISSG-- 104 (1155)
Q Consensus 31 ~~~~~~~~~-G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~---~~~~V~~l~Fs~dg~~LvS~s~D-- 104 (1155)
-++..+..| +|...++...|||.|.|+|+|...|.|||||..+.+.++... -.++|+.|+|+.++++++++++.
T Consensus 47 ~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGre 126 (603)
T KOG0318|consen 47 DNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRE 126 (603)
T ss_pred CCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcc
Confidence 344444544 788889999999999999999999999999998877666542 26799999999999999999864
Q ss_pred --CeEEEEECCCCceeeeecCC-CceeEEEEecCCC-EEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEe
Q 001109 105 --NEIQLWDLEARRITSTLPWE-SNITAFSVIFGTS-YMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLL 180 (1155)
Q Consensus 105 --g~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~-~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l 180 (1155)
|.+.+|| +|..+..+.+| ..|++++|-|... .+++|++|++|-++ +. -||++...
T Consensus 127 rfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ff--eG-------PPFKFk~s---------- 185 (603)
T KOG0318|consen 127 RFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFF--EG-------PPFKFKSS---------- 185 (603)
T ss_pred ceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEe--eC-------CCeeeeec----------
Confidence 3455565 78888888888 6799999999877 58999999998665 22 14444321
Q ss_pred eEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEcc
Q 001109 181 EFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVS 260 (1155)
Q Consensus 181 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~ 260 (1155)
.+.|. .+|.++.|+|+ | .++++++.||.|.++|-.
T Consensus 186 ---------------------------------~r~Hs----kFV~~VRysPD--G------~~Fat~gsDgki~iyDGk 220 (603)
T KOG0318|consen 186 ---------------------------------FREHS----KFVNCVRYSPD--G------SRFATAGSDGKIYIYDGK 220 (603)
T ss_pred ---------------------------------ccccc----cceeeEEECCC--C------CeEEEecCCccEEEEcCC
Confidence 11233 26777999998 4 689999999999999999
Q ss_pred CCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccc
Q 001109 261 EDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKD 340 (1155)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~ 340 (1155)
+|+.+...+. ...|.+.|.+++|+ ||+++|+|.+.|.+++|||+.+....+.
T Consensus 221 tge~vg~l~~---------------------------~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~slv~t 272 (603)
T KOG0318|consen 221 TGEKVGELED---------------------------SDAHKGSIFALSWS-PDSTQFLTVSADKTIKIWDVSTNSLVST 272 (603)
T ss_pred CccEEEEecC---------------------------CCCccccEEEEEEC-CCCceEEEecCCceEEEEEeeccceEEE
Confidence 9998875321 11368999999999 9999999999999999999998865443
Q ss_pred cccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecC
Q 001109 341 WKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLER 420 (1155)
Q Consensus 341 ~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~ 420 (1155)
+. +...-....| ...|. .++|+...-. ..++.+..+.... .++--.|
T Consensus 273 ~~------------~~~~v~dqqv-G~lWq--------kd~lItVSl~-----G~in~ln~~d~~~-------~~~i~GH 319 (603)
T KOG0318|consen 273 WP------------MGSTVEDQQV-GCLWQ--------KDHLITVSLS-----GTINYLNPSDPSV-------LKVISGH 319 (603)
T ss_pred ee------------cCCchhceEE-EEEEe--------CCeEEEEEcC-----cEEEEecccCCCh-------hheeccc
Confidence 11 1111112222 23353 2333332221 3455554332211 1223455
Q ss_pred CCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCC
Q 001109 421 KGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDG 500 (1155)
Q Consensus 421 ~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~ 500 (1155)
..++..+...+++ ..++.++-+|.|.-|+...... .+..-..|...|++++.... ..
T Consensus 320 nK~ITaLtv~~d~------~~i~SgsyDG~I~~W~~~~g~~---------------~~~~g~~h~nqI~~~~~~~~--~~ 376 (603)
T KOG0318|consen 320 NKSITALTVSPDG------KTIYSGSYDGHINSWDSGSGTS---------------DRLAGKGHTNQIKGMAASES--GE 376 (603)
T ss_pred ccceeEEEEcCCC------CEEEeeccCceEEEEecCCccc---------------cccccccccceEEEEeecCC--Cc
Confidence 6667666666544 4889999999999999764332 11122346666666655321 11
Q ss_pred chhHHHHHHHHhh-------------ccccCCCC-CccccCC--Ccc-------CcccCCC-CC------cccccccCCc
Q 001109 501 KLSVELSKTLSAA-------------KVRASHTP-STQLTGS--TTK-------WPLTGGI-PC------QLHDAEDYLV 550 (1155)
Q Consensus 501 ~~s~~~~~~~~~~-------------~~~~~~~~-s~~~~~~--~~~-------w~l~gg~-~~------~~~l~~~s~~ 550 (1155)
.+...|++.+..- +... +| +...... ... --+.+.. .. ..+..+++|+
T Consensus 377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~--QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~ 454 (603)
T KOG0318|consen 377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGS--QPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD 454 (603)
T ss_pred EEEEecCCeEEEEecccCcccccceeecCC--CceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC
Confidence 2222333321000 0000 01 0000000 000 0000000 00 0112288999
Q ss_pred CcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccce
Q 001109 551 ERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETL 630 (1155)
Q Consensus 551 ~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~ 630 (1155)
+..++.|++||.|+++.+....+..... ...|+++|++|+||||+.+||+|...+.|.+|+.......
T Consensus 455 ~~~vaVGG~Dgkvhvysl~g~~l~ee~~---------~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~--- 522 (603)
T KOG0318|consen 455 GSEVAVGGQDGKVHVYSLSGDELKEEAK---------LLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVK--- 522 (603)
T ss_pred CCEEEEecccceEEEEEecCCcccceee---------eecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCcee---
Confidence 9999999999999999998876422111 2268899999999999999999999999999999875321
Q ss_pred eeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEE
Q 001109 631 NLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYL 710 (1155)
Q Consensus 631 ~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~sl 710 (1155)
...+.-|++.|.||+|||+.+++|+|+.|-+|.||++..+.-.... ...|...|.+|
T Consensus 523 ---------------------~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~i--knAH~~gVn~v 579 (603)
T KOG0318|consen 523 ---------------------TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIII--KNAHLGGVNSV 579 (603)
T ss_pred ---------------------cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEe--ccccccCceeE
Confidence 0233459999999999999999999999999999999987543222 24599899999
Q ss_pred EEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECC
Q 001109 711 AVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDST 756 (1155)
Q Consensus 711 afs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~ 756 (1155)
+|- |...|++.+.|..|++|...
T Consensus 580 ~wl-----------------------de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 580 AWL-----------------------DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEe-----------------------cCceEEeccCcceeEEeccc
Confidence 996 57789999999999999864
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-40 Score=382.74 Aligned_cols=513 Identities=15% Similarity=0.162 Sum_probs=369.1
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEE--cCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCce
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLV--SPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRI 117 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~--~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~ 117 (1155)
.-+..+++++.+||+++|.+++..+-+++|..+...++.. ..|++||..++|.|.+..|++++.||.++|||+..+.+
T Consensus 60 ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~ 139 (775)
T KOG0319|consen 60 EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC 139 (775)
T ss_pred cchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE
Confidence 3445799999999999999999999999999988866543 24789999999999999999999999999999999999
Q ss_pred eeeecCC-CceeEEEEecCCC--EEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccc
Q 001109 118 TSTLPWE-SNITAFSVIFGTS--YMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKA 194 (1155)
Q Consensus 118 ~~~l~~~-~~Vtsva~spd~~--~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~ 194 (1155)
++.|+++ +.|.++.|.|+-. .|++|..|++|++|++....-.+. ++
T Consensus 140 th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~---------------------------~~---- 188 (775)
T KOG0319|consen 140 THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLH---------------------------TM---- 188 (775)
T ss_pred EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHH---------------------------HH----
Confidence 9999986 8899999999865 589999999999998764321110 00
Q ss_pred ccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccc
Q 001109 195 AFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQ 274 (1155)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~ 274 (1155)
..|.+.|++ +++.+++ ..+++++.|..+.|||+.+.+...+..
T Consensus 189 -------------------~~H~S~vts-----L~~~~d~--------~~~ls~~RDkvi~vwd~~~~~~l~~lp----- 231 (775)
T KOG0319|consen 189 -------------------ILHKSAVTS-----LAFSEDS--------LELLSVGRDKVIIVWDLVQYKKLKTLP----- 231 (775)
T ss_pred -------------------Hhhhhheee-----eeeccCC--------ceEEEeccCcEEEEeehhhhhhhheec-----
Confidence 012455555 9999984 569999999999999997666554411
Q ss_pred cccccccCCCCCCCCCCcccccccccccCCccEEEEEecC-----CCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCC
Q 001109 275 LKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASND-----GSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTD 349 (1155)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pd-----G~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~ 349 (1155)
....+.++.+. ++ |.++.|++.+|.+++||..++..... +..+..
T Consensus 232 --------------------------~ye~~E~vv~l-~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~-~~~~~~-- 281 (775)
T KOG0319|consen 232 --------------------------LYESLESVVRL-REELGGKGEYIITAGGSGVVQYWDSESGKCVYK-QRQSDS-- 281 (775)
T ss_pred --------------------------hhhheeeEEEe-chhcCCcceEEEEecCCceEEEEecccchhhhh-hccCCc--
Confidence 13345667776 66 67999999999999999998865332 000000
Q ss_pred cccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEE
Q 001109 350 FGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVL 429 (1155)
Q Consensus 350 i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~ 429 (1155)
..+..+... ...+++++...+ +.+-+++.+. +.- .+.-.+.++.+.||.+
T Consensus 282 ------------~e~~~~~~~------~~~~~~l~vtae-----Qnl~l~d~~~------l~i-~k~ivG~ndEI~Dm~~ 331 (775)
T KOG0319|consen 282 ------------EEIDHLLAI------ESMSQLLLVTAE-----QNLFLYDEDE------LTI-VKQIVGYNDEILDMKF 331 (775)
T ss_pred ------------hhhhcceec------cccCceEEEEcc-----ceEEEEEccc------cEE-ehhhcCCchhheeeee
Confidence 001111111 123344444432 4455553321 100 1223567789999999
Q ss_pred ecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHH
Q 001109 430 LPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKT 509 (1155)
Q Consensus 430 ~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~ 509 (1155)
+.+ +...++++++.+++++|+.....+ ..+++|...|.++.....+ .++.
T Consensus 332 lG~-----e~~~laVATNs~~lr~y~~~~~~c-----------------~ii~GH~e~vlSL~~~~~g--~lla------ 381 (775)
T KOG0319|consen 332 LGP-----EESHLAVATNSPELRLYTLPTSYC-----------------QIIPGHTEAVLSLDVWSSG--DLLA------ 381 (775)
T ss_pred cCC-----ccceEEEEeCCCceEEEecCCCce-----------------EEEeCchhheeeeeecccC--cEEE------
Confidence 943 345889999999999998654332 2577888887777632211 1111
Q ss_pred HHhhccccCCCCCccccCCCccCc-------------ccCCCCCcccccccC-CcCcEEEEEECCCcEEEEeCCCCCe-e
Q 001109 510 LSAAKVRASHTPSTQLTGSTTKWP-------------LTGGIPCQLHDAEDY-LVERLYIAGYRDGSTRIWDATYPTL-S 574 (1155)
Q Consensus 510 ~~~~~~~~~~~~s~~~~~~~~~w~-------------l~gg~~~~~~l~~~s-~~~~lLaTgs~DgtVrlWD~~~~~l-~ 574 (1155)
+..++. ..+.|. .+|+...+..+ +++ ....+|+|+|.|+++++|++....- .
T Consensus 382 -t~sKD~-----------svilWr~~~~~~~~~~~a~~~gH~~svgav-a~~~~~asffvsvS~D~tlK~W~l~~s~~~~ 448 (775)
T KOG0319|consen 382 -TGSKDK-----------SVILWRLNNNCSKSLCVAQANGHTNSVGAV-AGSKLGASFFVSVSQDCTLKLWDLPKSKETA 448 (775)
T ss_pred -EecCCc-----------eEEEEEecCCcchhhhhhhhccccccccee-eecccCccEEEEecCCceEEEecCCCccccc
Confidence 111111 112221 23444444344 333 2345899999999999999876210 0
Q ss_pred eeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEE
Q 001109 575 LIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKAL 654 (1155)
Q Consensus 575 ~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~ 654 (1155)
....+.. +-....|...|++|+++|+.+++|+|+.|.+++||++.... ...+
T Consensus 449 ~~~~~~~---~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-------------------------l~~v 500 (775)
T KOG0319|consen 449 FPIVLTC---RYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-------------------------LLGV 500 (775)
T ss_pred ccceehh---hHHHHhhcccccceEecCCCceEEecccccceeeecccCce-------------------------EEEE
Confidence 0111111 00123688999999999999999999999999999998432 2367
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCC
Q 001109 655 FSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSN 734 (1155)
Q Consensus 655 l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~ 734 (1155)
|.+|+..|+||.|+|..+.|||+|.|++|+||.+.+.+|+.+ ++||+..|..++|-
T Consensus 501 LsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT---~eGH~~aVlra~F~--------------------- 556 (775)
T KOG0319|consen 501 LSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKT---FEGHTSAVLRASFI--------------------- 556 (775)
T ss_pred eeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeee---ecCccceeEeeeee---------------------
Confidence 899999999999999999999999999999999999999876 47899999999998
Q ss_pred CCCCcEEEEEeCCceEEEEECCCCceeeeeecccCCCceEEE
Q 001109 735 DTKKETLFFMTKDAHIVVCDSTTGHILFSRSIHHQESNAIYM 776 (1155)
Q Consensus 735 ~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~~~~~~al~~ 776 (1155)
-+|..|+|++.||-|++|+..|++|+.+...|...-=|++.
T Consensus 557 -~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~ 597 (775)
T KOG0319|consen 557 -RNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSV 597 (775)
T ss_pred -eCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEee
Confidence 56888999999999999999999999999888654444444
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.6e-41 Score=356.82 Aligned_cols=376 Identities=17% Similarity=0.145 Sum_probs=280.1
Q ss_pred cCCCCcceeec-----cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEE
Q 001109 28 SKDFDPRVTLH-----YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSI 101 (1155)
Q Consensus 28 ~~~~~~~~~~~-----~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~ 101 (1155)
++.|..|.++| .||.+.|-|++|+|+|..||+|+.|.++|+||..+....++. .|..+|.+++|+|||..|+++
T Consensus 96 qavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG 175 (480)
T KOG0271|consen 96 QAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASG 175 (480)
T ss_pred chhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcc
Confidence 45677777776 599999999999999999999999999999998876655544 578899999999999999999
Q ss_pred ecCCeEEEEECCCCcee-eeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeE
Q 001109 102 SSGNEIQLWDLEARRIT-STLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLL 179 (1155)
Q Consensus 102 s~Dg~I~vWDl~t~~~~-~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 179 (1155)
+.||+|++||..+|+++ ..|++| ..|++++|.|-.
T Consensus 176 ~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~h------------------------------------------- 212 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLH------------------------------------------- 212 (480)
T ss_pred ccCCeEEEecCCCCCcccccccCcccceeEEeecccc-------------------------------------------
Confidence 99999999999998765 456666 456666553310
Q ss_pred eeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEc
Q 001109 180 LEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDV 259 (1155)
Q Consensus 180 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~ 259 (1155)
..|. . ++|++++.||.|+|||+
T Consensus 213 --------------------------------------------------l~p~--~------r~las~skDg~vrIWd~ 234 (480)
T KOG0271|consen 213 --------------------------------------------------LVPP--C------RRLASSSKDGSVRIWDT 234 (480)
T ss_pred --------------------------------------------------cCCC--c------cceecccCCCCEEEEEc
Confidence 0111 2 56999999999999999
Q ss_pred cCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCcc
Q 001109 260 SEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTK 339 (1155)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~ 339 (1155)
..+.++.... +|...|+|++|- -..+|++|+.|++|++|+...+...+
T Consensus 235 ~~~~~~~~ls------------------------------gHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r 282 (480)
T KOG0271|consen 235 KLGTCVRTLS------------------------------GHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCR 282 (480)
T ss_pred cCceEEEEec------------------------------cCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHH
Confidence 9998887632 168899999996 34589999999999999998765433
Q ss_pred ccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeec
Q 001109 340 DWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLE 419 (1155)
Q Consensus 340 ~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~ 419 (1155)
. ..+|...|..|+.+. +..++
T Consensus 283 ~----------------lkGHahwvN~lalsT---------------------dy~LR---------------------- 303 (480)
T KOG0271|consen 283 E----------------LKGHAHWVNHLALST---------------------DYVLR---------------------- 303 (480)
T ss_pred h----------------hcccchheeeeeccc---------------------hhhhh----------------------
Confidence 2 123444444442211 00000
Q ss_pred CCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCC
Q 001109 420 RKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRD 499 (1155)
Q Consensus 420 ~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~ 499 (1155)
.| .||-. ...+... +..+.
T Consensus 304 ----------------------------tg---af~~t-----------------~~~~~~~-------------se~~~ 322 (480)
T KOG0271|consen 304 ----------------------------TG---AFDHT-----------------GRKPKSF-------------SEEQK 322 (480)
T ss_pred ----------------------------cc---ccccc-----------------cccCCCh-------------HHHHH
Confidence 00 01100 0000000 00111
Q ss_pred CchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeee
Q 001109 500 GKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVF 579 (1155)
Q Consensus 500 ~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l 579 (1155)
.++.++-. ..-..+..|++|+.|.++-+|+-.... .++.
T Consensus 323 ----~Al~rY~~----------------------------------~~~~~~erlVSgsDd~tlflW~p~~~k-kpi~-- 361 (480)
T KOG0271|consen 323 ----KALERYEA----------------------------------VLKDSGERLVSGSDDFTLFLWNPFKSK-KPIT-- 361 (480)
T ss_pred ----HHHHHHHH----------------------------------hhccCcceeEEecCCceEEEecccccc-cchh--
Confidence 11111100 111223579999999999999864332 1111
Q ss_pred CCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCC
Q 001109 580 GSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLN 659 (1155)
Q Consensus 580 ~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~ 659 (1155)
...||..-|+.+.||||++++|+|+.|..|++|+-.+++. +.+|.+|-
T Consensus 362 -------rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~-------------------------lasfRGHv 409 (480)
T KOG0271|consen 362 -------RMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF-------------------------LASFRGHV 409 (480)
T ss_pred -------hhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch-------------------------hhhhhhcc
Confidence 1348999999999999999999999999999999988754 25789999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCc
Q 001109 660 SPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKE 739 (1155)
Q Consensus 660 ~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~ 739 (1155)
++|..||||.|.++|++||.|.+++|||+++.++... +.||.+.|..+.|+ |||.
T Consensus 410 ~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~D---LpGh~DEVf~vDws----------------------pDG~ 464 (480)
T KOG0271|consen 410 AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQD---LPGHADEVFAVDWS----------------------PDGQ 464 (480)
T ss_pred ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeeccc---CCCCCceEEEEEec----------------------CCCc
Confidence 9999999999999999999999999999999887654 46899999999999 9999
Q ss_pred EEEEEeCCceEEEEE
Q 001109 740 TLFFMTKDAHIVVCD 754 (1155)
Q Consensus 740 ~L~s~s~Dg~I~vwd 754 (1155)
.+++|++|..+++|-
T Consensus 465 rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 465 RVASGGKDKVLRLWR 479 (480)
T ss_pred eeecCCCceEEEeec
Confidence 999999999999994
No 5
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-35 Score=337.06 Aligned_cols=512 Identities=16% Similarity=0.163 Sum_probs=342.4
Q ss_pred cceeeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCC-ceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEE
Q 001109 33 PRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDN-IEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWD 111 (1155)
Q Consensus 33 ~~~~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~-~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWD 111 (1155)
++..+..|-...---+.|++||.-+.+-. .++|.|||..+ ...++...+...|+.++.+|+|.+|+++..+|...+-+
T Consensus 5 frfsNllGTvyr~Gnl~ft~dG~sviSPv-GNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs 83 (893)
T KOG0291|consen 5 FRFSNLLGTVYRAGNLVFTKDGNSVISPV-GNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVS 83 (893)
T ss_pred cchhhcccceeecCcEEECCCCCEEEecc-CCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEe
Confidence 33344456666666799999998887654 46899999754 55677777788999999999999999999999999999
Q ss_pred CCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccc
Q 001109 112 LEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREK 191 (1155)
Q Consensus 112 l~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~ 191 (1155)
+..+..++.+.....|.|+.|+|+|+++++|..+ .+.||........ ...||..+.. ..
T Consensus 84 ~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~-~~~pFvl~r~-------------------~~ 142 (893)
T KOG0291|consen 84 LLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKN-EFNPFVLHRT-------------------YL 142 (893)
T ss_pred cccceeeEEEeecCccceEEECCCCcEEEEEecc-eeEEEecCcchhc-ccCcceEeee-------------------ec
Confidence 9999999999999999999999999999998754 5788865543211 1113322211 00
Q ss_pred cccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccc
Q 001109 192 GKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSK 271 (1155)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~ 271 (1155)
+ +...+++ +.|+.|. +.|++|+.|-+++||+++..+-...+.
T Consensus 143 g-----------------------~fddi~s-----i~Ws~DS--------r~l~~gsrD~s~rl~~v~~~k~~~~~~-- 184 (893)
T KOG0291|consen 143 G-----------------------HFDDITS-----IDWSDDS--------RLLVTGSRDLSARLFGVDGNKNLFTYA-- 184 (893)
T ss_pred C-----------------------CccceeE-----EEeccCC--------ceEEeccccceEEEEEeccccccceEe--
Confidence 1 2344555 9999874 579999999999999998665433211
Q ss_pred ccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCcccc--c--cC---
Q 001109 272 DLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDW--K--SE--- 344 (1155)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~--~--~~--- 344 (1155)
+. +|...|.+.-|. .|...+.|-+.||.+.+|........... + .+
T Consensus 185 ---l~-----------------------gHkd~VvacfF~-~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d 237 (893)
T KOG0291|consen 185 ---LN-----------------------GHKDYVVACFFG-ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDD 237 (893)
T ss_pred ---cc-----------------------CCCcceEEEEec-cCcceEEEEecCceEEEEEecCCCccccccccccccccc
Confidence 11 257888888887 89999999999999999988743221110 0 00
Q ss_pred -----CCCCCcccccccCCCCCccEEEEEecccC------CCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceec
Q 001109 345 -----NSSTDFGKLQLSSGNRRLPVITLHWSAER------SRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCI 413 (1155)
Q Consensus 345 -----~~~~~i~kl~l~~~~~~~pI~~l~w~~~~------~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~ 413 (1155)
..++...|..| ....-+|.... ...-.+..+++.|... ....+..+.... -+++
T Consensus 238 ~~~~~~~Eek~~~~~~-------~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss----G~f~LyelP~f~---lih~- 302 (893)
T KOG0291|consen 238 EEMDEDGEEKTHKIFW-------YKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS----GEFGLYELPDFN---LIHS- 302 (893)
T ss_pred ccccccchhhhcceEE-------EEEEeeeecccccceeeeeccCCceEEEEEecC----CeeEEEecCCce---EEEE-
Confidence 00010111100 01111222100 0112344555555431 122222221110 0111
Q ss_pred eeeeecC-CCceeEEEEecCCCCCCCceeEEEEcC-CCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEE
Q 001109 414 GRVDLER-KGSFVDMVLLPNGMNESHGTLPCVLTN-PGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVG 491 (1155)
Q Consensus 414 ~~~~l~~-~~~v~d~~~~~~~~~~~~~~~l~v~~~-~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~ 491 (1155)
+.. ..++.++.+-..+ ..+++.+. -|+|.+|+. ....+.....+|.+.++++
T Consensus 303 ----LSis~~~I~t~~~N~tG------DWiA~g~~klgQLlVweW----------------qsEsYVlKQQgH~~~i~~l 356 (893)
T KOG0291|consen 303 ----LSISDQKILTVSFNSTG------DWIAFGCSKLGQLLVWEW----------------QSESYVLKQQGHSDRITSL 356 (893)
T ss_pred ----eecccceeeEEEecccC------CEEEEcCCccceEEEEEe----------------eccceeeeccccccceeeE
Confidence 111 1344444443222 23333333 378999984 3344445555555555443
Q ss_pred EEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCC
Q 001109 492 KLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYP 571 (1155)
Q Consensus 492 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~ 571 (1155)
+++|||+++|||+.||.||+||...+
T Consensus 357 ------------------------------------------------------~YSpDgq~iaTG~eDgKVKvWn~~Sg 382 (893)
T KOG0291|consen 357 ------------------------------------------------------AYSPDGQLIATGAEDGKVKVWNTQSG 382 (893)
T ss_pred ------------------------------------------------------EECCCCcEEEeccCCCcEEEEeccCc
Confidence 56788999999999999999999988
Q ss_pred CeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccc------eee--eccC-------
Q 001109 572 TLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEET------LNL--VTET------- 636 (1155)
Q Consensus 572 ~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~------~~~--v~~~------- 636 (1155)
.+ +.++ ..|+..|+++.|+.+|+.|++.+-||+||.||+....+-.+ .+| +..+
T Consensus 383 fC--~vTF---------teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~ 451 (893)
T KOG0291|consen 383 FC--FVTF---------TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVC 451 (893)
T ss_pred eE--EEEe---------ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEE
Confidence 72 2333 37899999999999999999999999999999987653221 122 1111
Q ss_pred -----CceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCcc-EEEEeccCCCCCCCeeEE
Q 001109 637 -----GKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFS-VLFITDSLSNSNSPVLYL 710 (1155)
Q Consensus 637 -----~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~-~l~~~~~~~~h~~~V~sl 710 (1155)
..++++|+...|. .+-.+.||.+||.+++|+|+|..||+||+|.+|++||+-... .+.+. .+..-|+.+
T Consensus 452 AG~~d~F~IfvWS~qTGq-llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl----~i~sdvl~v 526 (893)
T KOG0291|consen 452 AGAQDSFEIFVWSVQTGQ-LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL----EIRSDVLAV 526 (893)
T ss_pred eeccceEEEEEEEeecCe-eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE----eeccceeEE
Confidence 1234555443332 334688999999999999999999999999999999997652 23333 256779999
Q ss_pred EEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeee
Q 001109 711 AVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 711 afs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
+|+ |||+.|++++-||.|.+||...+...++.
T Consensus 527 sfr----------------------PdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 527 SFR----------------------PDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred EEc----------------------CCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 999 99999999999999999998876555443
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.2e-34 Score=315.83 Aligned_cols=499 Identities=14% Similarity=0.145 Sum_probs=344.6
Q ss_pred CCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCcee--
Q 001109 42 PSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRIT-- 118 (1155)
Q Consensus 42 ~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~-- 118 (1155)
++....|..+|.|+.++... ...|.+-+.++......+ +|..+++...|+|.|.|+++++..|+|||||.....-+
T Consensus 18 Rg~~~~ig~dpkgd~ilY~n-Gksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLK 96 (603)
T KOG0318|consen 18 RGVPIIIGGDPKGDNILYTN-GKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILK 96 (603)
T ss_pred CCcceEeccCCCCCeEEEeC-CCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeee
Confidence 34566788999999887754 356777777665544443 56779999999999999999999999999998764433
Q ss_pred eeec-CCCceeEEEEecCCCEEEEEeCCC--cEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccc
Q 001109 119 STLP-WESNITAFSVIFGTSYMYIGDEYG--MVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAA 195 (1155)
Q Consensus 119 ~~l~-~~~~Vtsva~spd~~~l~~G~~dG--~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~ 195 (1155)
.+++ ..++|..++++++++.+++-++.. -.+++.||....- +.+.|
T Consensus 97 nef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~Sv----------------------------Gei~G--- 145 (603)
T KOG0318|consen 97 NEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSV----------------------------GEITG--- 145 (603)
T ss_pred eeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCcc----------------------------ceeec---
Confidence 3343 358999999999999887655432 2455556664300 00001
Q ss_pred cccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccccc
Q 001109 196 FNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQL 275 (1155)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~ 275 (1155)
+...+.+ +.|-|..+. |+++|++|++|.+++-.--+.-..
T Consensus 146 --------------------hSr~ins-----~~~KpsRPf-------Ri~T~sdDn~v~ffeGPPFKFk~s-------- 185 (603)
T KOG0318|consen 146 --------------------HSRRINS-----VDFKPSRPF-------RIATGSDDNTVAFFEGPPFKFKSS-------- 185 (603)
T ss_pred --------------------cceeEee-----eeccCCCce-------EEEeccCCCeEEEeeCCCeeeeec--------
Confidence 2233344 999998776 899999999999987432222111
Q ss_pred ccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccc
Q 001109 276 KTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQL 355 (1155)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l 355 (1155)
...|.+-|.|+.|+ |||+++||.+.||.|.++|=.+++.... + -
T Consensus 186 ----------------------~r~HskFV~~VRys-PDG~~Fat~gsDgki~iyDGktge~vg~------------l-~ 229 (603)
T KOG0318|consen 186 ----------------------FREHSKFVNCVRYS-PDGSRFATAGSDGKIYIYDGKTGEKVGE------------L-E 229 (603)
T ss_pred ----------------------ccccccceeeEEEC-CCCCeEEEecCCccEEEEcCCCccEEEE------------e-c
Confidence 01267889999999 9999999999999999999888764322 1 1
Q ss_pred cCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEE---EEecC
Q 001109 356 SSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDM---VLLPN 432 (1155)
Q Consensus 356 ~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~---~~~~~ 432 (1155)
....|+..|+.+.|+| +..+++.++++ +...+|+..... +.. .+.....+.|+ ++.+.
T Consensus 230 ~~~aHkGsIfalsWsP------Ds~~~~T~SaD-----kt~KIWdVs~~s------lv~--t~~~~~~v~dqqvG~lWqk 290 (603)
T KOG0318|consen 230 DSDAHKGSIFALSWSP------DSTQFLTVSAD-----KTIKIWDVSTNS------LVS--TWPMGSTVEDQQVGCLWQK 290 (603)
T ss_pred CCCCccccEEEEEECC------CCceEEEecCC-----ceEEEEEeeccc------eEE--EeecCCchhceEEEEEEeC
Confidence 1346889999999987 56666666655 678888764321 111 12222223333 23332
Q ss_pred CCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHh
Q 001109 433 GMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSA 512 (1155)
Q Consensus 433 ~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~ 512 (1155)
..++.++-+|.|.+++... ...+..+.+|...||++..+++... +++
T Consensus 291 -------d~lItVSl~G~in~ln~~d----------------~~~~~~i~GHnK~ITaLtv~~d~~~-i~S--------- 337 (603)
T KOG0318|consen 291 -------DHLITVSLSGTINYLNPSD----------------PSVLKVISGHNKSITALTVSPDGKT-IYS--------- 337 (603)
T ss_pred -------CeEEEEEcCcEEEEecccC----------------CChhheecccccceeEEEEcCCCCE-EEe---------
Confidence 2678888889998887542 2245678899999999999876633 221
Q ss_pred hccccCCCCCccccCCCccCcccCCCCCcc-------cccccCCcC-cEEEEEECCCcEEEEeCCCCCe-----------
Q 001109 513 AKVRASHTPSTQLTGSTTKWPLTGGIPCQL-------HDAEDYLVE-RLYIAGYRDGSTRIWDATYPTL----------- 573 (1155)
Q Consensus 513 ~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~-------~l~~~s~~~-~lLaTgs~DgtVrlWD~~~~~l----------- 573 (1155)
.+.++....|....|..... .+..+...+ .-|+|.++|.++|+-++.....
T Consensus 338 ----------gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q 407 (603)
T KOG0318|consen 338 ----------GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ 407 (603)
T ss_pred ----------eccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCC
Confidence 11344555665544332210 122333343 6788999999999998754321
Q ss_pred -eeeeeeCCC-------cCccc-cC--------CCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccC
Q 001109 574 -SLIHVFGSE-------LPGIR-TA--------TESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTET 636 (1155)
Q Consensus 574 -~~l~~l~~~-------~~~i~-~~--------gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~ 636 (1155)
..+...... ..++. +. .-.....++|++|++..+|+|++||.|+||.+......
T Consensus 408 P~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~--------- 478 (603)
T KOG0318|consen 408 PKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK--------- 478 (603)
T ss_pred ceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccc---------
Confidence 111111110 00000 00 12346789999999999999999999999999875421
Q ss_pred CceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecC
Q 001109 637 GKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLS 716 (1155)
Q Consensus 637 ~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~ 716 (1155)
....+..|.++|++|+|||||.+||+|...+.|.+||+.+.... .. .+.-|++.|.+|+|+
T Consensus 479 --------------ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~-~~-~w~FHtakI~~~aWs--- 539 (603)
T KOG0318|consen 479 --------------EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVK-TN-RWAFHTAKINCVAWS--- 539 (603)
T ss_pred --------------ceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCcee-cc-eeeeeeeeEEEEEeC---
Confidence 11345789999999999999999999999999999999998762 22 234599999999999
Q ss_pred CCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC
Q 001109 717 DTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t 757 (1155)
|+..++++||-|-+|.||++..
T Consensus 540 -------------------P~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 540 -------------------PNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred -------------------CCceEEEeccccceEEEEEccC
Confidence 8899999999999999999875
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-36 Score=324.69 Aligned_cols=302 Identities=19% Similarity=0.209 Sum_probs=240.7
Q ss_pred cccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccc
Q 001109 216 IIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETV 295 (1155)
Q Consensus 216 ~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1155)
|..+|++ +.|+|+ + .+|++|+.|.++||||+.+..++.+ ++
T Consensus 114 H~e~Vl~-----~~fsp~--g------~~l~tGsGD~TvR~WD~~TeTp~~t-------~K------------------- 154 (480)
T KOG0271|consen 114 HGEAVLS-----VQFSPT--G------SRLVTGSGDTTVRLWDLDTETPLFT-------CK------------------- 154 (480)
T ss_pred CCCcEEE-----EEecCC--C------ceEEecCCCceEEeeccCCCCccee-------ec-------------------
Confidence 3466777 999996 4 6799999999999999999888765 22
Q ss_pred cccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCC
Q 001109 296 SDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSR 375 (1155)
Q Consensus 296 ~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~ 375 (1155)
+|...|.|++|+ |||+.||+|+.||.|++||..++..... ...+|+.+|..|+|.+..
T Consensus 155 ----gH~~WVlcvaws-PDgk~iASG~~dg~I~lwdpktg~~~g~---------------~l~gH~K~It~Lawep~h-- 212 (480)
T KOG0271|consen 155 ----GHKNWVLCVAWS-PDGKKIASGSKDGSIRLWDPKTGQQIGR---------------ALRGHKKWITALAWEPLH-- 212 (480)
T ss_pred ----CCccEEEEEEEC-CCcchhhccccCCeEEEecCCCCCcccc---------------cccCcccceeEEeecccc--
Confidence 168899999999 9999999999999999999998865432 123688899999986521
Q ss_pred CCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEec
Q 001109 376 NDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYD 455 (1155)
Q Consensus 376 ~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d 455 (1155)
..+.. ..++..+.||.+++||
T Consensus 213 l~p~~-----------------------------------------------------------r~las~skDg~vrIWd 233 (480)
T KOG0271|consen 213 LVPPC-----------------------------------------------------------RRLASSSKDGSVRIWD 233 (480)
T ss_pred cCCCc-----------------------------------------------------------cceecccCCCCEEEEE
Confidence 00111 1344556788899999
Q ss_pred CCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCccc
Q 001109 456 RPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLT 535 (1155)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~ 535 (1155)
... ....+.+.+|..+|||+..
T Consensus 234 ~~~----------------~~~~~~lsgHT~~VTCvrw------------------------------------------ 255 (480)
T KOG0271|consen 234 TKL----------------GTCVRTLSGHTASVTCVRW------------------------------------------ 255 (480)
T ss_pred ccC----------------ceEEEEeccCccceEEEEE------------------------------------------
Confidence 652 2334577889999999865
Q ss_pred CCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEe-----------cCC
Q 001109 536 GGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFC-----------SVT 604 (1155)
Q Consensus 536 gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafs-----------pdg 604 (1155)
||. .+++|||.|++||+|++..+.+. ..+ .||...|+.|+.+ |.+
T Consensus 256 GG~-------------gliySgS~DrtIkvw~a~dG~~~--r~l---------kGHahwvN~lalsTdy~LRtgaf~~t~ 311 (480)
T KOG0271|consen 256 GGE-------------GLIYSGSQDRTIKVWRALDGKLC--REL---------KGHAHWVNHLALSTDYVLRTGAFDHTG 311 (480)
T ss_pred cCC-------------ceEEecCCCceEEEEEccchhHH--Hhh---------cccchheeeeeccchhhhhcccccccc
Confidence 111 27999999999999999988632 223 3788889988877 334
Q ss_pred C-------------------------eEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCC
Q 001109 605 L-------------------------NLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLN 659 (1155)
Q Consensus 605 ~-------------------------~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~ 659 (1155)
+ +|++|++|.++.+|+..... +++....+|+
T Consensus 312 ~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k------------------------kpi~rmtgHq 367 (480)
T KOG0271|consen 312 RKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK------------------------KPITRMTGHQ 367 (480)
T ss_pred ccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc------------------------cchhhhhchh
Confidence 4 49999999999999876532 2345668999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCc
Q 001109 660 SPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKE 739 (1155)
Q Consensus 660 ~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~ 739 (1155)
.-|..|.||||++++|+||-|+.|+|||.++|+.+..+ .||-++|+.++|+ .|.+
T Consensus 368 ~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf---RGHv~~VYqvaws----------------------aDsR 422 (480)
T KOG0271|consen 368 ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF---RGHVAAVYQVAWS----------------------ADSR 422 (480)
T ss_pred hheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh---hhccceeEEEEec----------------------cCcc
Confidence 99999999999999999999999999999999988654 5799999999999 7899
Q ss_pred EEEEEeCCceEEEEECCCCceeeeeeccc
Q 001109 740 TLFFMTKDAHIVVCDSTTGHILFSRSIHH 768 (1155)
Q Consensus 740 ~L~s~s~Dg~I~vwd~~tG~~l~~~~~~~ 768 (1155)
+|+++|+|.+++|||+.|.++..-+|.|.
T Consensus 423 LlVS~SkDsTLKvw~V~tkKl~~DLpGh~ 451 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWDVRTKKLKQDLPGHA 451 (480)
T ss_pred EEEEcCCCceEEEEEeeeeeecccCCCCC
Confidence 99999999999999999988877665553
No 8
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-34 Score=328.15 Aligned_cols=493 Identities=17% Similarity=0.166 Sum_probs=335.6
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCcee
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRIT 118 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~ 118 (1155)
+-...++|++-+|+.-+||+|..||.|+||+..+.+...++ .|+.+|+.+.|...|.+|+|+|.|+.|.|||+......
T Consensus 63 ~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl 142 (888)
T KOG0306|consen 63 KKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGL 142 (888)
T ss_pred cccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceee
Confidence 34458999999999999999999999999999876666655 57899999999999999999999999999999999989
Q ss_pred eeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccc
Q 001109 119 STLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFN 197 (1155)
Q Consensus 119 ~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ 197 (1155)
..+++| ..||.+-|..+.+++++.+.|+.|++|+++..... .... .
T Consensus 143 ~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf--------~Thv--------------------d----- 189 (888)
T KOG0306|consen 143 FRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCF--------ETHV--------------------D----- 189 (888)
T ss_pred EEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceee--------eEEe--------------------c-----
Confidence 999997 78999999999999999999999999987764311 1100 0
Q ss_pred cceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCC-------eEEE--Ee
Q 001109 198 ASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSED-------KVVL--VR 268 (1155)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~-------~~~~--~~ 268 (1155)
+.+.+++ +++.+ +++++++.|+.+++|++... ..+. .+
T Consensus 190 ------------------~r~Eiw~-----l~~~~----------~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~ 236 (888)
T KOG0306|consen 190 ------------------HRGEIWA-----LVLDE----------KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLR 236 (888)
T ss_pred ------------------ccceEEE-----EEEec----------ceEEEEecCCceEEEEeecccccccccccceeecc
Confidence 2345555 88876 36999999999999998221 1111 11
Q ss_pred cccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccc--c-----
Q 001109 269 GSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKD--W----- 341 (1155)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~--~----- 341 (1155)
|. +..+ ..+..-.+.-. +++++|++-+.|..+.++.+.+.....- .
T Consensus 237 G~----~~rq----------------------sk~R~i~l~~d-~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~ 289 (888)
T KOG0306|consen 237 GT----FIRQ----------------------SKGREINLVTD-FSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKR 289 (888)
T ss_pred ce----eeec----------------------cCCceeEEeec-CcccEEEEecchhhhhheeecCHHHHHHHHHHHHHH
Confidence 11 0000 01111122222 3444555555555555555443311000 0
Q ss_pred ---ccC-------------------------------------------------------------CCCCCcccccccC
Q 001109 342 ---KSE-------------------------------------------------------------NSSTDFGKLQLSS 357 (1155)
Q Consensus 342 ---~~~-------------------------------------------------------------~~~~~i~kl~l~~ 357 (1155)
+.. ..+.+..--.+.-
T Consensus 290 ~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~ 369 (888)
T KOG0306|consen 290 AKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEI 369 (888)
T ss_pred hhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeee
Confidence 000 0000000001122
Q ss_pred CCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCC
Q 001109 358 GNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNES 437 (1155)
Q Consensus 358 ~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~ 437 (1155)
.+|+..|+++.++ .+.-++++|+. +.+.+|..+. ++|...+.- +-+....++|.+.
T Consensus 370 ~GHR~dVRsl~vS-------~d~~~~~Sga~-----~SikiWn~~t------~kciRTi~~---~y~l~~~Fvpgd~--- 425 (888)
T KOG0306|consen 370 GGHRSDVRSLCVS-------SDSILLASGAG-----ESIKIWNRDT------LKCIRTITC---GYILASKFVPGDR--- 425 (888)
T ss_pred ccchhheeEEEee-------cCceeeeecCC-----CcEEEEEccC------cceeEEecc---ccEEEEEecCCCc---
Confidence 3466666666554 24444555543 4677775542 233332221 2445566777664
Q ss_pred CceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhcccc
Q 001109 438 HGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRA 517 (1155)
Q Consensus 438 ~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 517 (1155)
.+++++.+|+|.+||.... ...-+++.|+..|..+
T Consensus 426 ---~Iv~G~k~Gel~vfdlaS~----------------~l~Eti~AHdgaIWsi-------------------------- 460 (888)
T KOG0306|consen 426 ---YIVLGTKNGELQVFDLASA----------------SLVETIRAHDGAIWSI-------------------------- 460 (888)
T ss_pred ---eEEEeccCCceEEEEeehh----------------hhhhhhhccccceeee--------------------------
Confidence 8889999999999997521 1112233444333222
Q ss_pred CCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCC-----CeeeeeeeCCCcCccccCCCC
Q 001109 518 SHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYP-----TLSLIHVFGSELPGIRTATES 592 (1155)
Q Consensus 518 ~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~-----~l~~l~~l~~~~~~i~~~gh~ 592 (1155)
+.+|++.-++|||.|.+|++||...- .-.....++. ...+++ .
T Consensus 461 ----------------------------~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~-~rtLel---~ 508 (888)
T KOG0306|consen 461 ----------------------------SLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKH-TRTLEL---E 508 (888)
T ss_pred ----------------------------eecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeecc-ceEEec---c
Confidence 45678888999999999999996421 1000011111 001122 2
Q ss_pred CCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCC
Q 001109 593 ESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGA 672 (1155)
Q Consensus 593 ~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~ 672 (1155)
..|.|+.+||||++||++=-|.+|+||-+++-+. ...+-||.-||.|+.+|||++
T Consensus 509 ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF-------------------------flsLYGHkLPV~smDIS~DSk 563 (888)
T KOG0306|consen 509 DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF-------------------------FLSLYGHKLPVLSMDISPDSK 563 (888)
T ss_pred ccEEEEEEcCCCcEEEEEeccCeEEEEEecceee-------------------------eeeecccccceeEEeccCCcC
Confidence 4799999999999999999999999999987432 246789999999999999999
Q ss_pred EEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEE
Q 001109 673 RLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVV 752 (1155)
Q Consensus 673 ~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~v 752 (1155)
.++|||.|.+|+||-++-|.|-..+. +|.+.|.++.|- |+...++++++|+.|+-
T Consensus 564 livTgSADKnVKiWGLdFGDCHKS~f---AHdDSvm~V~F~----------------------P~~~~FFt~gKD~kvKq 618 (888)
T KOG0306|consen 564 LIVTGSADKNVKIWGLDFGDCHKSFF---AHDDSVMSVQFL----------------------PKTHLFFTCGKDGKVKQ 618 (888)
T ss_pred eEEeccCCCceEEeccccchhhhhhh---cccCceeEEEEc----------------------ccceeEEEecCcceEEe
Confidence 99999999999999999988865543 599999999998 78889999999999999
Q ss_pred EECCCCceeeeeecccCCCceEEE
Q 001109 753 CDSTTGHILFSRSIHHQESNAIYM 776 (1155)
Q Consensus 753 wd~~tG~~l~~~~~~~~~~~al~~ 776 (1155)
||.+.=++|....-|..+-.+++|
T Consensus 619 WDg~kFe~iq~L~~H~~ev~cLav 642 (888)
T KOG0306|consen 619 WDGEKFEEIQKLDGHHSEVWCLAV 642 (888)
T ss_pred echhhhhhheeeccchheeeeeEE
Confidence 999888888877666544444444
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.3e-33 Score=317.82 Aligned_cols=532 Identities=19% Similarity=0.234 Sum_probs=362.5
Q ss_pred eeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCC
Q 001109 36 TLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEAR 115 (1155)
Q Consensus 36 ~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~ 115 (1155)
++-..+.+.|++++.||+|.+|.+--..|+..+-......+++.+.-+.+|.+|.|||||.++ +++..+-++||-.-..
T Consensus 49 Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~f-av~~gn~lqiw~~P~~ 127 (893)
T KOG0291|consen 49 TLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFF-AVGCGNLLQIWHAPGE 127 (893)
T ss_pred eEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCcEE-EEEecceeEEEecCcc
Confidence 334567788999999999999998888999988888777777666667899999999997654 4555889999986432
Q ss_pred c--------eeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccc
Q 001109 116 R--------ITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNH 186 (1155)
Q Consensus 116 ~--------~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~ 186 (1155)
. +..++.+| ..|+++.|+.|.+++++|+.|-++++|..+..++ +. +|...
T Consensus 128 ~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~-~~--~~~l~------------------ 186 (893)
T KOG0291|consen 128 IKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN-LF--TYALN------------------ 186 (893)
T ss_pred hhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc-cc--eEecc------------------
Confidence 1 22344455 7899999999999999999999999998776543 11 11111
Q ss_pred ccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEE
Q 001109 187 IQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVL 266 (1155)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~ 266 (1155)
+ |...|+. +.|.-+. ..+++.+.||.+.+|.....-...
T Consensus 187 -----g-----------------------Hkd~Vva-----cfF~~~~--------~~l~tvskdG~l~~W~~~~~P~~~ 225 (893)
T KOG0291|consen 187 -----G-----------------------HKDYVVA-----CFFGANS--------LDLYTVSKDGALFVWTCDLRPPEL 225 (893)
T ss_pred -----C-----------------------CCcceEE-----EEeccCc--------ceEEEEecCceEEEEEecCCCccc
Confidence 1 2345555 6666553 459999999999999876332111
Q ss_pred EecccccccccccccCCCCCCCCC------Cccc-ccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCcc
Q 001109 267 VRGSKDLQLKTEIVDDPSKNAGHN------LSET-VSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTK 339 (1155)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~ 339 (1155)
....++..-..... ....+++ -.+. ..-..+....|++++|+ +.-..||+|...|...++.+++-....
T Consensus 226 ~~~~kd~eg~~d~~---~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH-~~t~~lvvgFssG~f~LyelP~f~lih 301 (893)
T KOG0291|consen 226 DKAEKDEEGSDDEE---MDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFH-KGTNLLVVGFSSGEFGLYELPDFNLIH 301 (893)
T ss_pred cccccccccccccc---ccccchhhhcceEEEEEEeeeecccccceeeeecc-CCceEEEEEecCCeeEEEecCCceEEE
Confidence 11000000000000 0000000 0000 00000123679999999 889999999999999999998865432
Q ss_pred ccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeec
Q 001109 340 DWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLE 419 (1155)
Q Consensus 340 ~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~ 419 (1155)
. ++ -...+|..+.|+. -|..++.|+. +.-+++.++|+++.-.++. ..
T Consensus 302 ~--------------LS--is~~~I~t~~~N~-------tGDWiA~g~~-----klgQLlVweWqsEsYVlKQ-----Qg 348 (893)
T KOG0291|consen 302 S--------------LS--ISDQKILTVSFNS-------TGDWIAFGCS-----KLGQLLVWEWQSESYVLKQ-----QG 348 (893)
T ss_pred E--------------ee--cccceeeEEEecc-------cCCEEEEcCC-----ccceEEEEEeeccceeeec-----cc
Confidence 1 11 1245777887752 3445666654 3445666778876433322 22
Q ss_pred CCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCC
Q 001109 420 RKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRD 499 (1155)
Q Consensus 420 ~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~ 499 (1155)
|...+..+...|++ ..++.+.+||.+++||.....+ ..+..-|.+.||.+.|...+..
T Consensus 349 H~~~i~~l~YSpDg------q~iaTG~eDgKVKvWn~~SgfC----------------~vTFteHts~Vt~v~f~~~g~~ 406 (893)
T KOG0291|consen 349 HSDRITSLAYSPDG------QLIATGAEDGKVKVWNTQSGFC----------------FVTFTEHTSGVTAVQFTARGNV 406 (893)
T ss_pred cccceeeEEECCCC------cEEEeccCCCcEEEEeccCceE----------------EEEeccCCCceEEEEEEecCCE
Confidence 34455566665554 4889999999999999764332 3455669999999998754433
Q ss_pred CchhHHHHHHHHhhccccCCCCCccccCCCccCcc---------cCCCCCcccccccCCcCcEEEEEECCCc-EEEEeCC
Q 001109 500 GKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPL---------TGGIPCQLHDAEDYLVERLYIAGYRDGS-TRIWDAT 569 (1155)
Q Consensus 500 ~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l---------~gg~~~~~~l~~~s~~~~lLaTgs~Dgt-VrlWD~~ 569 (1155)
.++..++ +..+-|.+ +...+...+..+..|.|.++..|+.|.. |.+|+++
T Consensus 407 -llssSLD-------------------GtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q 466 (893)
T KOG0291|consen 407 -LLSSSLD-------------------GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ 466 (893)
T ss_pred -EEEeecC-------------------CeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee
Confidence 2221222 22222322 1222222222377788999999999874 9999999
Q ss_pred CCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCC
Q 001109 570 YPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGP 649 (1155)
Q Consensus 570 ~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~ 649 (1155)
+|++ +-+| .||.+||.+|+|+|+|..||+|+.|.+||+|++-..... +
T Consensus 467 TGql--lDiL---------sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~------------v--------- 514 (893)
T KOG0291|consen 467 TGQL--LDIL---------SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT------------V--------- 514 (893)
T ss_pred cCee--eehh---------cCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce------------e---------
Confidence 9984 2333 399999999999999999999999999999998764221 0
Q ss_pred ceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccC-----------------CCCCCCeeEEEE
Q 001109 650 QCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSL-----------------SNSNSPVLYLAV 712 (1155)
Q Consensus 650 ~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~-----------------~~h~~~V~slaf 712 (1155)
-+ -.+...|++++|+|||+.||+++.||.|.+||+..+..+..+.+- +....+.++++|
T Consensus 515 ---Et-l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~y 590 (893)
T KOG0291|consen 515 ---ET-LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICY 590 (893)
T ss_pred ---ee-EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEE
Confidence 11 236778999999999999999999999999999876554222110 112346888888
Q ss_pred eecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeecc
Q 001109 713 KSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSIH 767 (1155)
Q Consensus 713 s~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~ 767 (1155)
| +||..|++|++...|+++|+.+|-++..+.+.
T Consensus 591 S----------------------aDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS 623 (893)
T KOG0291|consen 591 S----------------------ADGKCILAGGESNSICIYDVPEGVLLKKFQIS 623 (893)
T ss_pred c----------------------CCCCEEEecCCcccEEEEECchhheeeeEEec
Confidence 8 89999999999999999999999999888554
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.6e-32 Score=311.13 Aligned_cols=514 Identities=16% Similarity=0.160 Sum_probs=344.7
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCce
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRI 117 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~ 117 (1155)
.||...|++|.|+..|.+||+|+.|+.|.|||.-+.+.++.+ +|...|+..-|..+..+|+|+|.|+.|++||+++..|
T Consensus 104 ngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhC 183 (888)
T KOG0306|consen 104 NGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHC 183 (888)
T ss_pred cccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccccee
Confidence 699999999999999999999999999999999888877765 5688999999999779999999999999999999999
Q ss_pred eeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCce-eeccce------eccCCceeeeceeEeeEecccccc
Q 001109 118 TSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGK-LIHSPY------YVPKDVIEVFNHLLLEFCPNHIQR 189 (1155)
Q Consensus 118 ~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~-l~~~~~------~i~~~~~~~~~~~~l~~~p~~~~~ 189 (1155)
..+.-.| +.|.++++++ +.+++++.++.+.||.++.+... ...++. ++.... -...+.+...+++. .
T Consensus 184 f~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqs--k~R~i~l~~d~s~r-~ 258 (888)
T KOG0306|consen 184 FETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQS--KGREINLVTDFSDR-F 258 (888)
T ss_pred eeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeecc--CCceeEEeecCccc-E
Confidence 9998877 8999999988 88899999999999998543211 000000 000000 00011111111111 0
Q ss_pred cccccccccceeeecCCC-----------------------CCCCc--cc----------ccccccccceeeEEEEeecc
Q 001109 190 EKGKAAFNASLLFYCMPP-----------------------DESGF--ID----------FIIRSKLRFFVEIRLLQFQK 234 (1155)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~--~~----------~~~~~v~~~~v~~v~~~p~~ 234 (1155)
+.. ...+.-+-.|++-. .+.+. .. +....+. .+.+-|..
T Consensus 259 ~~c-~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kik-----s~dv~~~~ 332 (888)
T KOG0306|consen 259 LVC-QGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIK-----SFDVTPSG 332 (888)
T ss_pred EEE-ecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhhee-----EEEEEecC
Confidence 000 00000000011100 00000 00 0122233 37777764
Q ss_pred cccccccccEEEEEEcCCeEEEEEccC-CeE--EEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEE
Q 001109 235 HVNSTLGFSQLLLVYANGLIILWDVSE-DKV--VLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWA 311 (1155)
Q Consensus 235 ~~~~~~~~~~llsg~~dG~I~lWd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s 311 (1155)
.. ...++-..++++.++.+.. ++. ...+. ..++-.+|...|.++|++
T Consensus 333 ~~------~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~------------------------~~i~~~GHR~dVRsl~vS 382 (888)
T KOG0306|consen 333 GT------ENTLVLLANNTVEWYSLENSGKTSPEADRT------------------------SNIEIGGHRSDVRSLCVS 382 (888)
T ss_pred Cc------ceeEEEeecCceEEEEeccCCCCCcccccc------------------------ceeeeccchhheeEEEee
Confidence 33 2233337788888877654 111 00000 011122368899999998
Q ss_pred ecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCC
Q 001109 312 SNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIG 391 (1155)
Q Consensus 312 ~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~ 391 (1155)
.|...+++|+ .+.|++|+..+..+.+. + ...-+....|+ ++++.++.|...
T Consensus 383 -~d~~~~~Sga-~~SikiWn~~t~kciRT------------i------~~~y~l~~~Fv-------pgd~~Iv~G~k~-- 433 (888)
T KOG0306|consen 383 -SDSILLASGA-GESIKIWNRDTLKCIRT------------I------TCGYILASKFV-------PGDRYIVLGTKN-- 433 (888)
T ss_pred -cCceeeeecC-CCcEEEEEccCcceeEE------------e------ccccEEEEEec-------CCCceEEEeccC--
Confidence 7777777764 56899999998877553 1 01123334444 456666777653
Q ss_pred CcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccC
Q 001109 392 SEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKIS 471 (1155)
Q Consensus 392 ~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~ 471 (1155)
.-+.++++....-.+.+ -.|.+.++++.+.|++ ..++.++.|.++.+||-.....
T Consensus 434 --Gel~vfdlaS~~l~Eti-------~AHdgaIWsi~~~pD~------~g~vT~saDktVkfWdf~l~~~---------- 488 (888)
T KOG0306|consen 434 --GELQVFDLASASLVETI-------RAHDGAIWSISLSPDN------KGFVTGSADKTVKFWDFKLVVS---------- 488 (888)
T ss_pred --CceEEEEeehhhhhhhh-------hccccceeeeeecCCC------CceEEecCCcEEEEEeEEEEec----------
Confidence 45777766543322322 1578889999887755 4888999999999999542111
Q ss_pred CCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcC
Q 001109 472 SSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVE 551 (1155)
Q Consensus 472 ~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~ 551 (1155)
.|+....+ + +...++. + .++. .+.++ .++||+
T Consensus 489 ---------~~gt~~k~----l-sl~~~rt-----------------------L-------el~d---dvL~v-~~Spdg 520 (888)
T KOG0306|consen 489 ---------VPGTQKKV----L-SLKHTRT-----------------------L-------ELED---DVLCV-SVSPDG 520 (888)
T ss_pred ---------cCccccee----e-eeccceE-----------------------E-------eccc---cEEEE-EEcCCC
Confidence 01101000 0 0000000 0 0111 12234 899999
Q ss_pred cEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcccccee
Q 001109 552 RLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLN 631 (1155)
Q Consensus 552 ~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~ 631 (1155)
++||.|=-|.||+++=+.+-.+- + .+.||..||.|+..|||++++++|+.|..|++|-++-+.
T Consensus 521 k~LaVsLLdnTVkVyflDtlKFf----l-------sLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD------ 583 (888)
T KOG0306|consen 521 KLLAVSLLDNTVKVYFLDTLKFF----L-------SLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD------ 583 (888)
T ss_pred cEEEEEeccCeEEEEEecceeee----e-------eecccccceeEEeccCCcCeEEeccCCCceEEeccccch------
Confidence 99999999999999987765421 1 245999999999999999999999999999999887643
Q ss_pred eeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEE
Q 001109 632 LVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLA 711 (1155)
Q Consensus 632 ~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~sla 711 (1155)
|...|-+|.+.|.+|.|-|....+-+++.|+.|+-||-..-..+.. +.+|...|++|+
T Consensus 584 -------------------CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~---L~~H~~ev~cLa 641 (888)
T KOG0306|consen 584 -------------------CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK---LDGHHSEVWCLA 641 (888)
T ss_pred -------------------hhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhhee---eccchheeeeeE
Confidence 3456778999999999999999999999999999999887666543 567999999999
Q ss_pred EeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECC
Q 001109 712 VKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDST 756 (1155)
Q Consensus 712 fs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~ 756 (1155)
.+ |+|.+++++|.|.+|++|...
T Consensus 642 v~----------------------~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 642 VS----------------------PNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred Ec----------------------CCCCeEEeccCCceeEeeecc
Confidence 99 889999999999999999854
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.5e-33 Score=300.36 Aligned_cols=282 Identities=16% Similarity=0.147 Sum_probs=232.4
Q ss_pred CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecC--CCEEEEEeCCCcEEEEEecCCC
Q 001109 81 PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFG--TSYMYIGDEYGMVYVLKYDTEE 157 (1155)
Q Consensus 81 ~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd--~~~l~~G~~dG~V~vw~~d~~~ 157 (1155)
....||..+.|+.|+..|+++|.+|.++||+..+...+++|.+| +.|.++.|+|. +..|++++.||+|++|+++.+.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 34679999999999999999999999999999999999999998 89999999998 5689999999999999988753
Q ss_pred ceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccccc
Q 001109 158 GKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVN 237 (1155)
Q Consensus 158 ~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~ 237 (1155)
+. ..+.+ |...|.. ++|+|++
T Consensus 253 --~l--------------------------~~l~g-----------------------H~~RVs~-----VafHPsG--- 273 (459)
T KOG0272|consen 253 --PL--------------------------QDLEG-----------------------HLARVSR-----VAFHPSG--- 273 (459)
T ss_pred --ch--------------------------hhhhc-----------------------chhhhee-----eeecCCC---
Confidence 11 00111 2334444 9999984
Q ss_pred ccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCe
Q 001109 238 STLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSV 317 (1155)
Q Consensus 238 ~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~ 317 (1155)
++|++++-|.+-+|||+.++..+.. .++|.+.|.+++|. +||+.
T Consensus 274 -----~~L~TasfD~tWRlWD~~tk~ElL~------------------------------QEGHs~~v~~iaf~-~DGSL 317 (459)
T KOG0272|consen 274 -----KFLGTASFDSTWRLWDLETKSELLL------------------------------QEGHSKGVFSIAFQ-PDGSL 317 (459)
T ss_pred -----ceeeecccccchhhcccccchhhHh------------------------------hcccccccceeEec-CCCce
Confidence 6799999999999999999876542 12368999999999 99999
Q ss_pred EEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEE
Q 001109 318 LAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLT 397 (1155)
Q Consensus 318 lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~lt 397 (1155)
++||+.|..-+|||++++.+.
T Consensus 318 ~~tGGlD~~~RvWDlRtgr~i----------------------------------------------------------- 338 (459)
T KOG0272|consen 318 AATGGLDSLGRVWDLRTGRCI----------------------------------------------------------- 338 (459)
T ss_pred eeccCccchhheeecccCcEE-----------------------------------------------------------
Confidence 999999999999999875320
Q ss_pred EEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccC
Q 001109 398 MLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQY 477 (1155)
Q Consensus 398 vl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~ 477 (1155)
.+.+
T Consensus 339 ------------------------------------------------------m~L~---------------------- 342 (459)
T KOG0272|consen 339 ------------------------------------------------------MFLA---------------------- 342 (459)
T ss_pred ------------------------------------------------------EEec----------------------
Confidence 0000
Q ss_pred CcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEE
Q 001109 478 PMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAG 557 (1155)
Q Consensus 478 ~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTg 557 (1155)
+|...|.. + +|+|+|..||||
T Consensus 343 -----gH~k~I~~-----------------------------------------------------V-~fsPNGy~lATg 363 (459)
T KOG0272|consen 343 -----GHIKEILS-----------------------------------------------------V-AFSPNGYHLATG 363 (459)
T ss_pred -----ccccceee-----------------------------------------------------E-eECCCceEEeec
Confidence 12211111 2 677888899999
Q ss_pred ECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEec-CCCeEEEEeCCCeEEEEEeccCccccceeeeccC
Q 001109 558 YRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCS-VTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTET 636 (1155)
Q Consensus 558 s~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafsp-dg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~ 636 (1155)
|.|+++||||+..... +|++. +|..-|+.|.|+| -|.+|++++.|++++||.-.+
T Consensus 364 s~Dnt~kVWDLR~r~~--ly~ip---------AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~------------- 419 (459)
T KOG0272|consen 364 SSDNTCKVWDLRMRSE--LYTIP---------AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT------------- 419 (459)
T ss_pred CCCCcEEEeeeccccc--ceecc---------cccchhhheEecccCCeEEEEcccCcceeeecCCC-------------
Confidence 9999999999987763 56553 8999999999999 788999999999999998765
Q ss_pred CceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001109 637 GKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLD 687 (1155)
Q Consensus 637 ~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWD 687 (1155)
++|+..+.||.+.|.++.+||||.++++++.|.++++|.
T Consensus 420 ------------~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 420 ------------WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ------------cccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 345577899999999999999999999999999999995
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=2.9e-31 Score=288.50 Aligned_cols=201 Identities=18% Similarity=0.198 Sum_probs=171.7
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcC--CcEEEEEecCCeEEEEECCCC
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQN--QGFLVSISSGNEIQLWDLEAR 115 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~d--g~~LvS~s~Dg~I~vWDl~t~ 115 (1155)
.|-..+++.+.|+++++.||+|+.+|.++||..++...+.++ .|...|.++.|.|. +..|+|++.||++++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 477788999999999999999999999999999887655444 67889999999997 558999999999999999999
Q ss_pred ceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccc
Q 001109 116 RITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKA 194 (1155)
Q Consensus 116 ~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~ 194 (1155)
.++..+.+| .+|..++|+|+|++|++++-|.+-++|++.+...-+.+ .|
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q----------------------------EG-- 301 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ----------------------------EG-- 301 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh----------------------------cc--
Confidence 999999988 78999999999999999999999999966553211100 01
Q ss_pred ccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccc
Q 001109 195 AFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQ 274 (1155)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~ 274 (1155)
|..+|.+ ++|+|+ | ..+++|+-|..-+|||+++|+++-+..
T Consensus 302 ---------------------Hs~~v~~-----iaf~~D--G------SL~~tGGlD~~~RvWDlRtgr~im~L~----- 342 (459)
T KOG0272|consen 302 ---------------------HSKGVFS-----IAFQPD--G------SLAATGGLDSLGRVWDLRTGRCIMFLA----- 342 (459)
T ss_pred ---------------------cccccce-----eEecCC--C------ceeeccCccchhheeecccCcEEEEec-----
Confidence 2345556 999998 4 679999999999999999999886521
Q ss_pred cccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 275 LKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
+|.++|.++.|+ |+|-.||||+.|++++|||++.
T Consensus 343 -------------------------gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 343 -------------------------GHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLRM 376 (459)
T ss_pred -------------------------ccccceeeEeEC-CCceEEeecCCCCcEEEeeecc
Confidence 158899999999 9999999999999999999863
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=2.1e-29 Score=257.12 Aligned_cols=174 Identities=18% Similarity=0.195 Sum_probs=140.1
Q ss_pred cCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccc
Q 001109 550 VERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEET 629 (1155)
Q Consensus 550 ~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~ 629 (1155)
+..-|++|.++|.||+||+...... +.+-. ....+|.+++..|||.+|+.+...|..++|++-.......
T Consensus 135 nQteLis~dqsg~irvWDl~~~~c~--~~liP--------e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 135 NQTELISGDQSGNIRVWDLGENSCT--HELIP--------EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE 204 (311)
T ss_pred CcceEEeecCCCcEEEEEccCCccc--cccCC--------CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc
Confidence 3345888999999999999876532 22211 2234899999999999999999999999999987432211
Q ss_pred eeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeE
Q 001109 630 LNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLY 709 (1155)
Q Consensus 630 ~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~s 709 (1155)
++++..|..|++-|+...+|||+++||++|.|.+|+||+.++- ..... .+.+|...|+.
T Consensus 205 -------------------l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~-~l~gh~rWvWd 263 (311)
T KOG0315|consen 205 -------------------LEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLEL-VLTGHQRWVWD 263 (311)
T ss_pred -------------------ceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEE-EeecCCceEEe
Confidence 3455678999999999999999999999999999999999987 22222 35789999999
Q ss_pred EEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeecccCCCceEEE
Q 001109 710 LAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSIHHQESNAIYM 776 (1155)
Q Consensus 710 lafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~~~~~~al~~ 776 (1155)
++|| .||++|++|+.|+++++||+..|+.+..-+-|.|+...++|
T Consensus 264 c~FS----------------------~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 264 CAFS----------------------ADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred eeec----------------------cCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 9999 78999999999999999999999988877777665544443
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=2.3e-28 Score=254.91 Aligned_cols=289 Identities=13% Similarity=0.167 Sum_probs=228.2
Q ss_pred CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCce
Q 001109 81 PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGK 159 (1155)
Q Consensus 81 ~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~ 159 (1155)
.|.+.|.++.|++|+++|+++|+||.+.|||.-|....+.++.+ ..|-.++|+|.|+++|.|+-|....|+.+..++..
T Consensus 53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~ 132 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE 132 (343)
T ss_pred ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccc
Confidence 46789999999999999999999999999999999888888866 78999999999999999999998888766654211
Q ss_pred eeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccccccc
Q 001109 160 LIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNST 239 (1155)
Q Consensus 160 l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~ 239 (1155)
-. .+.. + ++..|.. ++.++.|-++
T Consensus 133 g~-----~~v~-----------------r------------------------~l~gHtg----ylScC~f~dD------ 156 (343)
T KOG0286|consen 133 GN-----VRVS-----------------R------------------------ELAGHTG----YLSCCRFLDD------ 156 (343)
T ss_pred cc-----ceee-----------------e------------------------eecCccc----eeEEEEEcCC------
Confidence 10 0000 0 0111221 4445777764
Q ss_pred ccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEec-CCCeE
Q 001109 240 LGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASN-DGSVL 318 (1155)
Q Consensus 240 ~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~p-dG~~l 318 (1155)
++|++++.|.+..+||+.+++.+.... +|.+.|.++.++ | +++.+
T Consensus 157 ---~~ilT~SGD~TCalWDie~g~~~~~f~------------------------------GH~gDV~slsl~-p~~~ntF 202 (343)
T KOG0286|consen 157 ---NHILTGSGDMTCALWDIETGQQTQVFH------------------------------GHTGDVMSLSLS-PSDGNTF 202 (343)
T ss_pred ---CceEecCCCceEEEEEcccceEEEEec------------------------------CCcccEEEEecC-CCCCCeE
Confidence 469999999999999999999887622 268899999999 7 99999
Q ss_pred EEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEE
Q 001109 319 AVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTM 398 (1155)
Q Consensus 319 asg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltv 398 (1155)
++|+.|+..++||++++.. .
T Consensus 203 vSg~cD~~aklWD~R~~~c----------------------------------------------------------~-- 222 (343)
T KOG0286|consen 203 VSGGCDKSAKLWDVRSGQC----------------------------------------------------------V-- 222 (343)
T ss_pred EecccccceeeeeccCcce----------------------------------------------------------e--
Confidence 9999999999999975411 0
Q ss_pred EEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCC
Q 001109 399 LYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYP 478 (1155)
Q Consensus 399 l~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~ 478 (1155)
T Consensus 223 -------------------------------------------------------------------------------- 222 (343)
T KOG0286|consen 223 -------------------------------------------------------------------------------- 222 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEE
Q 001109 479 MLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGY 558 (1155)
Q Consensus 479 ~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs 558 (1155)
++.++|++.|+++.| .|+|.-++||+
T Consensus 223 qtF~ghesDINsv~f------------------------------------------------------fP~G~afatGS 248 (343)
T KOG0286|consen 223 QTFEGHESDINSVRF------------------------------------------------------FPSGDAFATGS 248 (343)
T ss_pred EeecccccccceEEE------------------------------------------------------ccCCCeeeecC
Confidence 012346666666654 35566799999
Q ss_pred CCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCc
Q 001109 559 RDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGK 638 (1155)
Q Consensus 559 ~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~ 638 (1155)
.|++.|++|++..+-..+|. .. .-..+|++++||-.|++|.+|..|.++.+||.-.++.
T Consensus 249 DD~tcRlyDlRaD~~~a~ys--~~-------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~------------ 307 (343)
T KOG0286|consen 249 DDATCRLYDLRADQELAVYS--HD-------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER------------ 307 (343)
T ss_pred CCceeEEEeecCCcEEeeec--cC-------cccCCceeEEEcccccEEEeeecCCceeEeeccccce------------
Confidence 99999999998876333332 11 2234899999999999999999999999999876543
Q ss_pred eEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001109 639 EVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLD 687 (1155)
Q Consensus 639 ~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWD 687 (1155)
+..|.+|...|+||..+|||.-|++||+|.+++||.
T Consensus 308 -------------vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 308 -------------VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -------------EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 246789999999999999999999999999999994
No 15
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.9e-26 Score=262.32 Aligned_cols=552 Identities=14% Similarity=0.120 Sum_probs=325.0
Q ss_pred CCCCcceeec----cCCCCCceEEEEcCCCCEEEEEE--cCCeEEEEccCCceEEEE-cCCCCCEEEEEEEcCCcEEEEE
Q 001109 29 KDFDPRVTLH----YGIPSTASILAFDHVQSLLAIGT--QDGRIKVIGGDNIEGLLV-SPKQLAFKHLEFLQNQGFLVSI 101 (1155)
Q Consensus 29 ~~~~~~~~~~----~G~~~~vs~lafsp~g~lLAsgs--~DG~I~vw~~~~~~~~~~-~~~~~~V~~l~Fs~dg~~LvS~ 101 (1155)
.+|+++...+ ..++..++|+|||++|+++|+|- ..-.+|||+......+.. ..|+-.|++++|+|.+.|++++
T Consensus 61 Vlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSV 140 (1080)
T KOG1408|consen 61 VLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSV 140 (1080)
T ss_pred EEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEee
Confidence 3455554443 35677899999999999999997 557899999865433332 2577899999999999999998
Q ss_pred ec--CCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCce-----ee-------------
Q 001109 102 SS--GNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGK-----LI------------- 161 (1155)
Q Consensus 102 s~--Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~-----l~------------- 161 (1155)
+. |-.|.+||++.......-+..+.|++++|+.||.|+++.+ +..|++|.++....- +.
T Consensus 141 GsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~ 219 (1080)
T KOG1408|consen 141 GSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNE 219 (1080)
T ss_pred ccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccch
Confidence 85 4467899998766666666678999999999999998765 567999988865410 00
Q ss_pred ------------ccceeccCCceeeeceeEeeEecccc---cc-----cccccccc---------ccee-ee--------
Q 001109 162 ------------HSPYYVPKDVIEVFNHLLLEFCPNHI---QR-----EKGKAAFN---------ASLL-FY-------- 203 (1155)
Q Consensus 162 ------------~~~~~i~~~~~~~~~~~~l~~~p~~~---~~-----~~~~~~~~---------~~~~-~~-------- 203 (1155)
...|.|...- ..++|+.+.. |. ......++ ..++ +|
T Consensus 220 f~avaCg~gicAestfait~qG------hLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~ 293 (1080)
T KOG1408|consen 220 FLAVACGVGICAESTFAITAQG------HLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYA 293 (1080)
T ss_pred hhhhhhcCcccccceEEEeccc------ceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhc
Confidence 0111111100 0123332210 00 00000000 0000 00
Q ss_pred -cCCC-CCCCccc---ccccccc-----cceee--EEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEE-Eecc
Q 001109 204 -CMPP-DESGFID---FIIRSKL-----RFFVE--IRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVL-VRGS 270 (1155)
Q Consensus 204 -~~~~-~~~~~~~---~~~~~v~-----~~~v~--~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~-~~~~ 270 (1155)
.+|. .+.|... ....+.. ..+.. ++.|.|.. ..|...|.|..+++||++.-+.+. ....
T Consensus 294 ~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~--------~klscVYndhSlYvWDvrD~~kvgk~~s~ 365 (1080)
T KOG1408|consen 294 GTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETT--------DKLSCVYNDHSLYVWDVRDVNKVGKCSSM 365 (1080)
T ss_pred cccccccccccchhhcccccccccccCcccCCceeEEEecCCC--------ceEEEEEcCceEEEEeccccccccceeee
Confidence 0110 0011000 0000000 00112 25566553 579999999999999998644221 0000
Q ss_pred cccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCc
Q 001109 271 KDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDF 350 (1155)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i 350 (1155)
+.....+.+- ..+.+ .-..-++.|. |.|. +.|.+.||+||+||+........-....-+..+
T Consensus 366 --lyHS~ciW~V-----------e~~p~--nv~~~~~acl--p~~c-F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l 427 (1080)
T KOG1408|consen 366 --LYHSACIWDV-----------ENLPC--NVHSPTAACL--PRGC-FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANL 427 (1080)
T ss_pred --eeccceeeee-----------ccccc--cccCcccccC--Cccc-eeEecCCCcEEEeecccccccceeecccchhhh
Confidence 0000000000 00000 0111234443 4444 889999999999999874221100000000111
Q ss_pred cccc---------------------ccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCccccc
Q 001109 351 GKLQ---------------------LSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIES 409 (1155)
Q Consensus 351 ~kl~---------------------l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~ 409 (1155)
.|+. .+.-..+--|+.++-+ ++++.+++|.. ...+++.+|-.-..+-.
T Consensus 428 ~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS-------p~gqhLAsGDr----~GnlrVy~Lq~l~~~~~ 496 (1080)
T KOG1408|consen 428 SKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS-------PDGQHLASGDR----GGNLRVYDLQELEYTCF 496 (1080)
T ss_pred hcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC-------CCcceecccCc----cCceEEEEehhhhhhhh
Confidence 1111 1111233445666543 45666666643 25677776532211111
Q ss_pred ceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcce
Q 001109 410 LKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMT 489 (1155)
Q Consensus 410 ~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It 489 (1155)
.-.|...+..+...-+.- ....++.++.+.-|++||.+. ...+..++..|.+.||
T Consensus 497 -------~eAHesEilcLeyS~p~~---~~kLLASasrdRlIHV~Dv~r---------------ny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 497 -------MEAHESEILCLEYSFPVL---TNKLLASASRDRLIHVYDVKR---------------NYDLVQTLDGHSSSIT 551 (1080)
T ss_pred -------eecccceeEEEeecCchh---hhHhhhhccCCceEEEEeccc---------------ccchhhhhccccccee
Confidence 112344444444331110 113455667777789999752 1223457888999999
Q ss_pred EEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCC
Q 001109 490 VGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDAT 569 (1155)
Q Consensus 490 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~ 569 (1155)
+++|...+. ...+++.+.|+.|.|=-..
T Consensus 552 svKFa~~gl----------------------------------------------------n~~MiscGADksimFr~~q 579 (1080)
T KOG1408|consen 552 SVKFACNGL----------------------------------------------------NRKMISCGADKSIMFRVNQ 579 (1080)
T ss_pred EEEEeecCC----------------------------------------------------ceEEEeccCchhhheehhc
Confidence 999852110 1156777788877654332
Q ss_pred CCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCC
Q 001109 570 YPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGP 649 (1155)
Q Consensus 570 ~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~ 649 (1155)
...-..++.-.+++. +| ..+..++..|..++++++++|..|+||++..++..
T Consensus 580 k~~~g~~f~r~t~t~-----~k-tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~---------------------- 631 (1080)
T KOG1408|consen 580 KASSGRLFPRHTQTL-----SK-TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV---------------------- 631 (1080)
T ss_pred cccCceecccccccc-----cc-ceEEEeeeCCCcceEEEEecccceEEEecccccee----------------------
Confidence 111001111111111 22 36899999999999999999999999999886532
Q ss_pred ceeEEe---ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCC
Q 001109 650 QCKALF---SVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPK 726 (1155)
Q Consensus 650 ~~~~~l---~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~ 726 (1155)
..| .+|.+...-|...|.|-+||+...|+++.++|..++.++.++ .||+..|+.+.|.
T Consensus 632 ---k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m---~GHsE~VTG~kF~------------- 692 (1080)
T KOG1408|consen 632 ---KSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM---TGHSEAVTGVKFL------------- 692 (1080)
T ss_pred ---eeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh---cCcchheeeeeec-------------
Confidence 222 357788888999999999999999999999999999998764 5799999999999
Q ss_pred CCCCCCCCCCCCcEEEEEeCCceEEEEECCC
Q 001109 727 DSDINSSNDTKKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 727 ~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t 757 (1155)
+|-+.|++.+.||.|+||-+..
T Consensus 693 ---------nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 693 ---------NDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ---------ccchhheeecCCceEEEEECch
Confidence 7888999999999999998754
No 16
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.7e-27 Score=299.18 Aligned_cols=939 Identities=18% Similarity=0.144 Sum_probs=454.7
Q ss_pred CCCCcccccCCCcCCCCcceeeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCC--CEEEEEEEc
Q 001109 16 PRQNDEIKENLTSKDFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQL--AFKHLEFLQ 93 (1155)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~--~V~~l~Fs~ 93 (1155)
+......+..+..++|.++..+++|.+.....+||||..++||.|+.+|.|++|+..+.+....++... .+..+.|..
T Consensus 9 ~~~~~~~~~~~~~~~f~~~~~~~~G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~ 88 (993)
T KOG1983|consen 9 SKKKNPPRERLKNDLFAFDKTNRHGFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLV 88 (993)
T ss_pred cccCCCccccccchhcccccceecCCCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeee
Confidence 334455789999999999999999999999999999999999999999999999999999887765433 445555555
Q ss_pred CCcEEEEEecCCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCC-ceeeccceeccCCce
Q 001109 94 NQGFLVSISSGNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEE-GKLIHSPYYVPKDVI 172 (1155)
Q Consensus 94 dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~-~~l~~~~~~i~~~~~ 172 (1155)
......+...+..+.+|-......+ ...+.+++++..+--.+ +.| ..+.+++++++... ..+...++.-.....
T Consensus 89 ~~s~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (993)
T KOG1983|consen 89 GISRNLVLSDDDSLHLWSIKIKTGV---FLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVP 163 (993)
T ss_pred cccccceeecccceeeeccccccee---ecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccce
Confidence 5555666666777778875433222 12345566665555556 666 88888887665432 111111111111000
Q ss_pred e--eeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEc
Q 001109 173 E--VFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYA 250 (1155)
Q Consensus 173 ~--~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~ 250 (1155)
. ....+.+.|.+.+.....- .++....+... ...++. +..+.-. .-++.++.
T Consensus 164 ~~~~s~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~-----~~~~~~~---------~~~~~~~~ 217 (993)
T KOG1983|consen 164 YESLSPTLSIEGLVIDLDTVLI-----------SLPDAYLGLSL-IEYESL-----QVLYYSP---------TKILIGFN 217 (993)
T ss_pred eeeeccceeeecccccccccee-----------ecccccccccc-cccccc-----eeeeecC---------CCcceeee
Confidence 0 0011133333333221100 00000000000 011111 1222221 23667777
Q ss_pred CCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEE
Q 001109 251 NGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLW 330 (1155)
Q Consensus 251 dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lW 330 (1155)
-+.+.+|+......... -.+....+. ++|..+++++.||.+.+|
T Consensus 218 ~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~-~~~~~~v~~h~Dgs~~fW 261 (993)
T KOG1983|consen 218 RGLVVIKDRASKYVQSA-----------------------------------YLPNGQLES-RDGSHFVSYHTDGSYAFW 261 (993)
T ss_pred eeeeeehhcccccchhh-----------------------------------cccccccCc-cCCceEEEEEecCCEEee
Confidence 78888887544333221 001111125 899999999999999999
Q ss_pred EcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCC---cceEEEEEccCCccc
Q 001109 331 NLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGS---EEVLTMLYLNWSSRI 407 (1155)
Q Consensus 331 d~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~---~~~ltvl~l~~~~~~ 407 (1155)
|...+.....-+ +..+..... .+ |...+.+............++..++...+. .+.+++.. +.....
T Consensus 262 d~s~g~~~~~~~-------~~~~~~~~~-~~-p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~ 331 (993)
T KOG1983|consen 262 DVSSGKLQIARN-------PVPLVSLVP-YG-PCKQINRILTELPRSGKPFWICQGGMPRGSYGDRHCVSVEH-DGTQVK 331 (993)
T ss_pred ecCCCceeecCc-------cccccccCC-CC-hhhhhcccccccccccCcEEEecCCCccceecccceeEeec-CCceeE
Confidence 999875411100 000000000 01 222222221111112222333444433211 12222221 111000
Q ss_pred ccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCc
Q 001109 408 ESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPH 487 (1155)
Q Consensus 408 ~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~ 487 (1155)
. . ....+..+...... +...-........+.++...... ......++....++...-|.+.
T Consensus 332 ~--------~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~ 392 (993)
T KOG1983|consen 332 L--------D--FTSSVIGLVGVTSE----DPMSNFDANPNLVVLLEEELVPP-----DLQTLGIPSVSPPYLGSHHKSA 392 (993)
T ss_pred E--------E--EEecccceeeeecc----cccCccccCccceeccccccChh-----hhhccCCCcccchhccccCcce
Confidence 0 0 00001111100000 00000000011111111110000 0001122333444555556667
Q ss_pred ceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccC-CCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEE
Q 001109 488 MTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTG-STTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIW 566 (1155)
Q Consensus 488 It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~-~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlW 566 (1155)
|++..+.+.-... .|.....+..... +.+ ....|+..++... +...+.-.+..+++.|+.+++|
T Consensus 393 I~~~~~~~~~~~~----~~~~~~~~~~~~~-------~~~~~~~s~~~v~~~~~----~~~~~~~~~g~~~~~d~~~~~~ 457 (993)
T KOG1983|consen 393 ITCLSLDGEVPTM----LYPSGLAAGNAQS-------VPPVSALSWPIVGGRLL----QSAPKLLEIGLTGHEDSTVSFL 457 (993)
T ss_pred eeccccCCCcccc----ccccccccccccC-------CCchhccccceeeceec----ccCccceeecccccccceeeEE
Confidence 7766553211110 0000011111110 111 3344555554321 1233445577888999999999
Q ss_pred eCCCCCeeeeeeeCCCcCc-------cccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccC---
Q 001109 567 DATYPTLSLIHVFGSELPG-------IRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTET--- 636 (1155)
Q Consensus 567 D~~~~~l~~l~~l~~~~~~-------i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~--- 636 (1155)
+.....+..++.+.....- .........+..+.+++....+++++..+.+..-.+..-...+...++...
T Consensus 458 ~~~~~s~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ic~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (993)
T KOG1983|consen 458 DAGGPSLRPLYKLDTRSAFLTDGSFDPYSDDPRLGVQKPALCKKSGQLAVGGTAGQILTLELTDSIVTGAVSFFCADLNQ 537 (993)
T ss_pred eccccccchhhhhccccccccCCcCCcccccccccCCcchhcccccccccccccceeeeeeecccccccceeeeehhhhh
Confidence 9988776666555432110 001122235667788888888899988888888777654332222221100
Q ss_pred CceEEEecC----CCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEE-EEecCCccEEEEeccCCCCCCCeeEEE
Q 001109 637 GKEVHILPG----GDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVA-MLDISTFSVLFITDSLSNSNSPVLYLA 711 (1155)
Q Consensus 637 ~~~~~~~~~----~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~-lWDi~~~~~l~~~~~~~~h~~~V~sla 711 (1155)
......+.. ..++.+.. +..-...+..+.+.|-. +...+++. .|..-.......... +. +..+.
T Consensus 538 ~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~v~~~~~~-----~~~~~~~~s~~~~~~~g~~~~~~l---~~--~~~v~ 606 (993)
T KOG1983|consen 538 DVSVFKWKGHDRLSPRSNPLS-LPDGFQPFVDVQDRPPA-----GVTQGTLASGWILVKEGTVSGIGL---SD--IPSVN 606 (993)
T ss_pred ccccccccCchhccccccccC-CCCccccceEEEecCCc-----ceeeeccccceeccccceeeeeec---cc--cceee
Confidence 000000000 00000000 01111223344443321 11111111 111111111110000 11 11111
Q ss_pred EeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCc--------------------eeeeeecccCCC
Q 001109 712 VKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGH--------------------ILFSRSIHHQES 771 (1155)
Q Consensus 712 fs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~--------------------~l~~~~~~~~~~ 771 (1155)
-++ ++ ..+..++.-+..++.++.--. .-+....++...
T Consensus 607 ~~~---------------------~~-~~~~~~~~~~~~~~~n~~~~l~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~ 664 (993)
T KOG1983|consen 607 VCT---------------------LD-PNLILGDERGLSRVKNLKKSLRLSFRSIRPSRVSLTGSEYGLDGVSSILPVEG 664 (993)
T ss_pred ecc---------------------CC-ccceeccCCCceeEeeccCchhhhhccCCCceEecccceeccCchhhhhhcch
Confidence 110 11 112233333333333322110 001011122222
Q ss_pred ceEEEEEEeCCCCCCcccccccccCCCCCCCCCCCCCcCCCCCCCCCcccccccccccchhhhhccceEEEEEeccceee
Q 001109 772 NAIYMCIIEGGNFFSETSSEKQSLNTPQNSKATSEPDQTNANTGSDPVVAELETSTEATYLERIFEHLFVLLCYEDALWL 851 (1155)
Q Consensus 772 ~al~~~~ld~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llc~e~~~~~ 851 (1155)
.+..|.....-...++-..+...++++.+.+.+.-. ..+.+.+.+..++...-........++++|+|+.+++
T Consensus 665 ~~~~~~~~~~i~p~~~~~~~~~~~~s~~~~~~~~~~-------~~~~~~~~s~~~s~~~~~~~~~~~~~~~i~~e~~~~v 737 (993)
T KOG1983|consen 665 TDRGELIGFKILPVSRGRFSAKAEDSLVNITSSLYS-------AITLASDSSISSSLQGISYALAIEVPTLICGESAIRV 737 (993)
T ss_pred hhccccccceeccccccccccccccCCCccccchhh-------hcchhhccCccccccccccccccccceEEecCCccce
Confidence 222222222222222222232223333322111111 1111111121111113334445579999999999999
Q ss_pred eccccccccccceeEEeeccCCccceeeeeeCCceeEEEEEeecCcEEEeecCCcccccccccccccccccccCcceeee
Q 001109 852 YPLKSLIQGHTDSIHKVNLLKPCCWTTSFKKNEKECGLVVLYQTGDIEIRVLPYLEVGGQTSLMSLLRWNYKTNMEETLC 931 (1155)
Q Consensus 852 ysl~~~~qg~~~~~~k~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~ieirslp~l~~~~~~s~~~~~~~~~~~~~~~~~~ 931 (1155)
|+++.+.+++...+...-+...||+.++.+. +++|+|++.+|+|++++||+|+.+....+-.-+.|++..++..+-
T Consensus 738 ~~~~~q~~~~~~~~~~~~~~~~~~~~~i~~~---~~~l~~~~~~g~i~~~slp~Lre~~~~v~~lp~~~~~i~~~~~~~- 813 (993)
T KOG1983|consen 738 FSVPAQQCKELQLIHEAPVVGISVLDGISKP---EPSLDLLDANGHISKHSLPSLREEQFKVLPLPLVKNIIKNKLTAG- 813 (993)
T ss_pred ecccccccccceeeccccceeeeeeecccCc---cceeeEeecCCCccceecchhhhhhccccCCcchhhhcccchhcc-
Confidence 9999998888888887777788888877665 899999999999999999999999877666666677777654432
Q ss_pred ecCCCcEEEEcCCCCCCCCccchhhhhhhhhccccCCChhhhccccccccccccccccccccccccccccccchhhcHHH
Q 001109 932 SSDSGEIVLVDFSSIPVSYPHLHDKVLEAAADATIDLSPAQRKEEGTALGILGGIIKGFKADKAEQNVLIPEVSNKTCAH 1011 (1155)
Q Consensus 932 ~s~~g~~~lvng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1155)
||+|..+.. +.+++....+|+.-.+..-.+-...+++--+ +.....-...+.+
T Consensus 814 ----------~g~~~~~~~------------~~~~s~~~~~k~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 866 (993)
T KOG1983|consen 814 ----------NGFSVHKVG------------ELAASAVERSKKTLEQELQELTNLGDISVLG-----LPLLKLEIPYAPI 866 (993)
T ss_pred ----------ccccccchh------------heecchhhhhhcccccccccccccccccccc-----ccccchhhhhhhh
Confidence 777555553 2333333344544322222222221111100 0011111223333
Q ss_pred hhcccCCCCCCCCCCCCCCCCCceecccccccCCCCcccCCCcccccccccchhHHHHhhccCCCCCCCCCCCCHHHHHH
Q 001109 1012 LDSIFSNPPFLKPSTDIPDDKGVIELNIDDIDIDGPLIVTSSSQTSKNDRKDKGTERKKLFEGAATDTKPKSRTVDEIKA 1091 (1155)
Q Consensus 1012 l~~~f~~~~~~~~~~~~~~~~~~~~l~~ddi~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ 1091 (1155)
..+.|+.. .+......|..++.||..++|.++.+-++.+..+.....++ .+| +.....+.+..
T Consensus 867 ~~~~~~g~--l~~g~~~~~~~~i~~l~~e~~~~~~~~~~~~~~~~~~~~~~---~~~------------~~~~~~~~~~~ 929 (993)
T KOG1983|consen 867 RQSDIKGV--LFFGTVGCDPYKISELEGERISLATKYEVVPISSGDVSSRS---SAR------------AILGPPDGEEP 929 (993)
T ss_pred hccccccc--cccCcCCCChhhhcccccccccccccceeeccccccCCccc---ccc------------cccCCCcccch
Confidence 44444443 33344444556688999999999988766554433222211 111 11122333445
Q ss_pred HhcccchhhHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 001109 1092 KYKKSEVQGTAA--AAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWWQL 1155 (1155)
Q Consensus 1092 ~~~~~~~~~~~~--~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~~~~~ww~~ 1155 (1155)
+|+++. .+.. ......++++||||||+.+++||++|+++|++|..+|+++..+++.||||++
T Consensus 930 ~~~~a~--~~~~~~~~~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~~kk~~~f 993 (993)
T KOG1983|consen 930 KYAQAS--GVSSGSAASGALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYKVKKWYDF 993 (993)
T ss_pred hhcccc--cccccchhhhcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhccC
Confidence 555554 3333 7778889999999999999999999999999999999999999999999986
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=2.3e-27 Score=260.97 Aligned_cols=336 Identities=18% Similarity=0.216 Sum_probs=236.1
Q ss_pred cccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccc
Q 001109 216 IIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETV 295 (1155)
Q Consensus 216 ~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1155)
+.++|+. .+|+|...+ .+++++.|-..++|++.+..-.. ...+.++..+.-+.. ..
T Consensus 177 ~~~~V~~-----~~WnP~~~~-------llasg~~~s~ari~~l~e~~~~~---~~q~~lrh~~~~~~~---------s~ 232 (524)
T KOG0273|consen 177 HESEVFI-----CAWNPLRDG-------LLASGSGDSTARIWNLLENSNIG---STQLVLRHCIREGGK---------SV 232 (524)
T ss_pred CCCceEE-----EecCchhhh-------hhhccCCccceeeeeehhhcccc---chhhhhhhhhhhhcc---------cC
Confidence 4556666 999998664 68899999999999997621110 011112221111100 01
Q ss_pred cccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCC
Q 001109 296 SDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSR 375 (1155)
Q Consensus 296 ~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~ 375 (1155)
...+.|++++|+ .+|+.||+|+.||.+++|+...... .....|+.||.+|+|..
T Consensus 233 ----~~nkdVT~L~Wn-~~G~~LatG~~~G~~riw~~~G~l~-----------------~tl~~HkgPI~slKWnk---- 286 (524)
T KOG0273|consen 233 ----PSNKDVTSLDWN-NDGTLLATGSEDGEARIWNKDGNLI-----------------STLGQHKGPIFSLKWNK---- 286 (524)
T ss_pred ----CccCCcceEEec-CCCCeEEEeecCcEEEEEecCchhh-----------------hhhhccCCceEEEEEcC----
Confidence 125789999999 8999999999999999999876532 22346899999999964
Q ss_pred CCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCC-CceeEEEEecCCCCCCCceeEEEEcCCCeeEEe
Q 001109 376 NDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERK-GSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVY 454 (1155)
Q Consensus 376 ~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~-~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~ 454 (1155)
++..+ ++++-| +...+|+.- .+ .. ...+.+. .+..|+...... .++....+|.|++|
T Consensus 287 --~G~yi-lS~~vD----~ttilwd~~--~g--~~----~q~f~~~s~~~lDVdW~~~~-------~F~ts~td~~i~V~ 344 (524)
T KOG0273|consen 287 --KGTYI-LSGGVD----GTTILWDAH--TG--TV----KQQFEFHSAPALDVDWQSND-------EFATSSTDGCIHVC 344 (524)
T ss_pred --CCCEE-EeccCC----ccEEEEecc--Cc--eE----EEeeeeccCCccceEEecCc-------eEeecCCCceEEEE
Confidence 45554 444443 455555431 11 10 1112222 223455444322 56677778888888
Q ss_pred cCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcc
Q 001109 455 DRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPL 534 (1155)
Q Consensus 455 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l 534 (1155)
.+.. ....-+..+|+..|.++.
T Consensus 345 kv~~----------------~~P~~t~~GH~g~V~alk------------------------------------------ 366 (524)
T KOG0273|consen 345 KVGE----------------DRPVKTFIGHHGEVNALK------------------------------------------ 366 (524)
T ss_pred EecC----------------CCcceeeecccCceEEEE------------------------------------------
Confidence 7541 111123444666555544
Q ss_pred cCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCC---------C
Q 001109 535 TGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVT---------L 605 (1155)
Q Consensus 535 ~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg---------~ 605 (1155)
+.|.+.+|+|+|.|+|+|||........ . .+.+|+..|..+.|+|+| .
T Consensus 367 ------------~n~tg~LLaS~SdD~TlkiWs~~~~~~~--~---------~l~~Hskei~t~~wsp~g~v~~n~~~~~ 423 (524)
T KOG0273|consen 367 ------------WNPTGSLLASCSDDGTLKIWSMGQSNSV--H---------DLQAHSKEIYTIKWSPTGPVTSNPNMNL 423 (524)
T ss_pred ------------ECCCCceEEEecCCCeeEeeecCCCcch--h---------hhhhhccceeeEeecCCCCccCCCcCCc
Confidence 3455679999999999999997655310 1 233788899999999974 4
Q ss_pred eEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 001109 606 NLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAM 685 (1155)
Q Consensus 606 ~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~l 685 (1155)
+|++++.|++|++||+..+ +|+.+|..|+.+|.+|+|||+|++||+|+.||.|.+
T Consensus 424 ~l~sas~dstV~lwdv~~g-------------------------v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~i 478 (524)
T KOG0273|consen 424 MLASASFDSTVKLWDVESG-------------------------VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHI 478 (524)
T ss_pred eEEEeecCCeEEEEEccCC-------------------------ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEe
Confidence 6999999999999999874 356788999999999999999999999999999999
Q ss_pred EecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC
Q 001109 686 LDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 686 WDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
|+++++++++... -.+.|..|+|+ .+|..|..+-+|+.+++.|+
T Consensus 479 ws~~~~~l~~s~~----~~~~Ifel~Wn----------------------~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 479 WSTKTGKLVKSYQ----GTGGIFELCWN----------------------AAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ccccchheeEeec----CCCeEEEEEEc----------------------CCCCEEEEEecCCCceEEEe
Confidence 9999999887542 46779999998 67888999999999999986
No 18
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=8.3e-27 Score=249.97 Aligned_cols=343 Identities=15% Similarity=0.125 Sum_probs=257.7
Q ss_pred CcceeeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEE
Q 001109 32 DPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLW 110 (1155)
Q Consensus 32 ~~~~~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vW 110 (1155)
|...+...+|...|.+++.+|+.+++|+|+.|..-.||+..+.+..... .|+..|.++.|+.+|.+|++++-+|.|+||
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 4444455799999999999999999999999999999999888766554 578999999999999999999999999999
Q ss_pred ECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccc
Q 001109 111 DLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQR 189 (1155)
Q Consensus 111 Dl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~ 189 (1155)
...++.....+..+ +.|.=+.++|-+.+|+.|+.||.|.+|.++... ..+ .
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~--~~k--------------------------v 185 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA--LCK--------------------------V 185 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc--eee--------------------------E
Confidence 99999988887644 677888999999999999999999777665531 110 0
Q ss_pred cccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEec
Q 001109 190 EKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRG 269 (1155)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~ 269 (1155)
++| +..++.+ =.|.|+ | +++++++.||+|++||..+++++...+
T Consensus 186 ~~G-----------------------h~~~ct~-----G~f~pd--G------Kr~~tgy~dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 186 MSG-----------------------HNSPCTC-----GEFIPD--G------KRILTGYDDGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred ecC-----------------------CCCCccc-----ccccCC--C------ceEEEEecCceEEEEecCCCceeEEec
Confidence 001 1233333 567887 5 789999999999999999999887532
Q ss_pred ccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCC
Q 001109 270 SKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTD 349 (1155)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~ 349 (1155)
.. +..+..++.++ .+|..+..|..+|.+++-+..+++.
T Consensus 230 ~~-----------------------------e~~~~~~~~~~-~~~~~~~~g~~e~~~~~~~~~sgKV------------ 267 (399)
T KOG0296|consen 230 QA-----------------------------EGLELPCISLN-LAGSTLTKGNSEGVACGVNNGSGKV------------ 267 (399)
T ss_pred cc-----------------------------ccCcCCccccc-cccceeEeccCCccEEEEccccceE------------
Confidence 10 13446688888 8899999999888877754333210
Q ss_pred cccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEE
Q 001109 350 FGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVL 429 (1155)
Q Consensus 350 i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~ 429 (1155)
+.
T Consensus 268 ----------------------------------------------v~-------------------------------- 269 (399)
T KOG0296|consen 268 ----------------------------------------------VN-------------------------------- 269 (399)
T ss_pred ----------------------------------------------EE--------------------------------
Confidence 00
Q ss_pred ecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHH
Q 001109 430 LPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKT 509 (1155)
Q Consensus 430 ~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~ 509 (1155)
..+|. .|...+.++..+.++.+.+.
T Consensus 270 ----------------~~n~~--------------------------~~~l~~~~e~~~esve~~~~------------- 294 (399)
T KOG0296|consen 270 ----------------CNNGT--------------------------VPELKPSQEELDESVESIPS------------- 294 (399)
T ss_pred ----------------ecCCC--------------------------Cccccccchhhhhhhhhccc-------------
Confidence 00000 00001112222223322111
Q ss_pred HHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccC
Q 001109 510 LSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTA 589 (1155)
Q Consensus 510 ~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~ 589 (1155)
+..=.+.|+|+.||+|-|||.....++.++
T Consensus 295 --------------------------------------ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c------------ 324 (399)
T KOG0296|consen 295 --------------------------------------SSKLPLAACGSVDGTIAIYDLAASTLRHIC------------ 324 (399)
T ss_pred --------------------------------------ccccchhhcccccceEEEEecccchhheec------------
Confidence 011126889999999999999888766444
Q ss_pred CCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcC
Q 001109 590 TESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSN 669 (1155)
Q Consensus 590 gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSp 669 (1155)
.|..+|+.+.|-+ ..+|++++.+|.|+.||.+++. +..++.+|+..|.+++++|
T Consensus 325 ~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~-------------------------l~~~y~GH~~~Il~f~ls~ 378 (399)
T KOG0296|consen 325 EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ-------------------------LKFTYTGHQMGILDFALSP 378 (399)
T ss_pred cCCCceEEEEEcC-cchheeeccCceEEeeeccccc-------------------------eEEEEecCchheeEEEEcC
Confidence 3556899999999 7899999999999999999863 3467899999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecC
Q 001109 670 FGARLAVGFECSQVAMLDIS 689 (1155)
Q Consensus 670 dg~~LAsGs~Dg~V~lWDi~ 689 (1155)
+.++++++|.|++.+|+++.
T Consensus 379 ~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 379 QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCcEEEEecCCCeEEEEecC
Confidence 99999999999999999864
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=4.7e-27 Score=239.99 Aligned_cols=184 Identities=21% Similarity=0.259 Sum_probs=149.6
Q ss_pred CEEEEEEcCCeEEEEccCCceEEEEcCC-CCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCc--eeeeecCC-CceeEE
Q 001109 55 SLLAIGTQDGRIKVIGGDNIEGLLVSPK-QLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARR--ITSTLPWE-SNITAF 130 (1155)
Q Consensus 55 ~lLAsgs~DG~I~vw~~~~~~~~~~~~~-~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~--~~~~l~~~-~~Vtsv 130 (1155)
-+||+++.|-+||+|...++.+..+.+| ...|..|...|+++.|++++ .-.||++|+.++. ++.++.++ ..|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 4899999999999999999999888776 56899999999998888877 4579999999875 57889988 899999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCC
Q 001109 131 SVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDES 210 (1155)
Q Consensus 131 a~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (1155)
.|..+|++||+|++||+++||++-.... ++.|
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~---qR~~--------------------------------------------- 121 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSC---QRNY--------------------------------------------- 121 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCccc---chhc---------------------------------------------
Confidence 9999999999999999999996544210 0001
Q ss_pred CcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCC
Q 001109 211 GFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHN 290 (1155)
Q Consensus 211 ~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (1155)
.+..+|.. +.++|+. ..|+++..+|.|++||+.+..+......
T Consensus 122 ----~~~spVn~-----vvlhpnQ--------teLis~dqsg~irvWDl~~~~c~~~liP-------------------- 164 (311)
T KOG0315|consen 122 ----QHNSPVNT-----VVLHPNQ--------TELISGDQSGNIRVWDLGENSCTHELIP-------------------- 164 (311)
T ss_pred ----cCCCCcce-----EEecCCc--------ceEEeecCCCcEEEEEccCCccccccCC--------------------
Confidence 12344555 9999985 3699999999999999988765432110
Q ss_pred CcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 291 LSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 291 ~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
+....|.+++.. |||++++.+..-|..++|++..
T Consensus 165 ---------e~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 165 ---------EDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred ---------CCCcceeeEEEc-CCCcEEEEecCCccEEEEEccC
Confidence 024678999999 9999999999999999999854
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=9.2e-27 Score=241.93 Aligned_cols=299 Identities=19% Similarity=0.188 Sum_probs=221.6
Q ss_pred eeeeecCC-CceeEEEEecC-CCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccc
Q 001109 117 ITSTLPWE-SNITAFSVIFG-TSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKA 194 (1155)
Q Consensus 117 ~~~~l~~~-~~Vtsva~spd-~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~ 194 (1155)
+..++++| +.|++++..+. .+.++.++.|.++-+|++..++.+ |-.+... +.|
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~-----~G~~~r~------------------~~G-- 61 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK-----YGVPVRR------------------LTG-- 61 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc-----cCceeee------------------eec--
Confidence 44577777 89999999887 558889999999999988765422 1111100 001
Q ss_pred ccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccc
Q 001109 195 AFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQ 274 (1155)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~ 274 (1155)
|.. +|+-++.++++ ++.++++.||.+++||+.+++..+..
T Consensus 62 ---------------------HsH-----~v~dv~~s~dg--------~~alS~swD~~lrlWDl~~g~~t~~f------ 101 (315)
T KOG0279|consen 62 ---------------------HSH-----FVSDVVLSSDG--------NFALSASWDGTLRLWDLATGESTRRF------ 101 (315)
T ss_pred ---------------------cce-----EecceEEccCC--------ceEEeccccceEEEEEecCCcEEEEE------
Confidence 122 33338888874 67999999999999999998765531
Q ss_pred cccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCccccc
Q 001109 275 LKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQ 354 (1155)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~ 354 (1155)
++|...|.+++|+ +|.++|++|+.|.+|++||+-..-
T Consensus 102 ------------------------~GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt~g~c------------------ 138 (315)
T KOG0279|consen 102 ------------------------VGHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNTLGVC------------------ 138 (315)
T ss_pred ------------------------EecCCceEEEEec-CCCceeecCCCcceeeeeeecccE------------------
Confidence 1368899999999 999999999999999999975320
Q ss_pred ccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCC
Q 001109 355 LSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGM 434 (1155)
Q Consensus 355 l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~ 434 (1155)
..++
T Consensus 139 ----------------------------------------k~t~------------------------------------ 142 (315)
T KOG0279|consen 139 ----------------------------------------KYTI------------------------------------ 142 (315)
T ss_pred ----------------------------------------EEEE------------------------------------
Confidence 0000
Q ss_pred CCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhc
Q 001109 435 NESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAK 514 (1155)
Q Consensus 435 ~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~ 514 (1155)
.+++ +...|+|+.|+|..
T Consensus 143 -----------~~~~----------------------------------~~~WVscvrfsP~~----------------- 160 (315)
T KOG0279|consen 143 -----------HEDS----------------------------------HREWVSCVRFSPNE----------------- 160 (315)
T ss_pred -----------ecCC----------------------------------CcCcEEEEEEcCCC-----------------
Confidence 0000 12346677775321
Q ss_pred cccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCC
Q 001109 515 VRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESES 594 (1155)
Q Consensus 515 ~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~ 594 (1155)
..-+|++++.|++||+||+..-++... ..||+.-
T Consensus 161 -----------------------------------~~p~Ivs~s~DktvKvWnl~~~~l~~~-----------~~gh~~~ 194 (315)
T KOG0279|consen 161 -----------------------------------SNPIIVSASWDKTVKVWNLRNCQLRTT-----------FIGHSGY 194 (315)
T ss_pred -----------------------------------CCcEEEEccCCceEEEEccCCcchhhc-----------ccccccc
Confidence 122799999999999999987653321 2389999
Q ss_pred eEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEE
Q 001109 595 VSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARL 674 (1155)
Q Consensus 595 V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~L 674 (1155)
|+.++|||||..+++|+.||.+.+||++.++.. . ..+|...|.+++|+|+--+|
T Consensus 195 v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l-------------------------y-sl~a~~~v~sl~fspnrywL 248 (315)
T KOG0279|consen 195 VNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL-------------------------Y-SLEAFDIVNSLCFSPNRYWL 248 (315)
T ss_pred EEEEEECCCCCEEecCCCCceEEEEEccCCcee-------------------------E-eccCCCeEeeEEecCCceeE
Confidence 999999999999999999999999999886531 1 13688899999999999888
Q ss_pred EEEeCCCcEEEEecCCccEEEEeccC-CCC-----CCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCc
Q 001109 675 AVGFECSQVAMLDISTFSVLFITDSL-SNS-----NSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDA 748 (1155)
Q Consensus 675 AsGs~Dg~V~lWDi~~~~~l~~~~~~-~~h-----~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg 748 (1155)
+.+...+ |+|||++++.++.....- .+. ...-.+|+|+ +||+.|+.|-.|+
T Consensus 249 ~~at~~s-IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws----------------------~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 249 CAATATS-IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWS----------------------ADGQTLFAGYTDN 305 (315)
T ss_pred eeccCCc-eEEEeccchhhhhhccccccccccccCCcEEEEEEEc----------------------CCCcEEEeeecCC
Confidence 8887655 999999999988654321 122 2235678998 8999999999999
Q ss_pred eEEEEECC
Q 001109 749 HIVVCDST 756 (1155)
Q Consensus 749 ~I~vwd~~ 756 (1155)
.|++|.+.
T Consensus 306 ~irv~qv~ 313 (315)
T KOG0279|consen 306 VIRVWQVA 313 (315)
T ss_pred cEEEEEee
Confidence 99999864
No 21
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=3.4e-28 Score=283.60 Aligned_cols=150 Identities=20% Similarity=0.268 Sum_probs=132.0
Q ss_pred cCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcc
Q 001109 547 DYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSN 626 (1155)
Q Consensus 547 ~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~ 626 (1155)
|+|.|-++||||.|+|.|+|...... ++.++ .||-..|.|+.|+|+..++|+|+.|.+||+||..++..
T Consensus 501 F~P~GyYFatas~D~tArLWs~d~~~--PlRif---------aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~ 569 (707)
T KOG0263|consen 501 FAPRGYYFATASHDQTARLWSTDHNK--PLRIF---------AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS 569 (707)
T ss_pred ecCCceEEEecCCCceeeeeecccCC--chhhh---------cccccccceEEECCcccccccCCCCceEEEEEcCCCcE
Confidence 44556689999999999999876643 33333 38888999999999999999999999999999988532
Q ss_pred ccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCC
Q 001109 627 EETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSP 706 (1155)
Q Consensus 627 ~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~ 706 (1155)
+..|.||.++|++|+|||+|++||+|+.||.|.+||+.+++.+.+. .+|++.
T Consensus 570 -------------------------VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l---~~Ht~t 621 (707)
T KOG0263|consen 570 -------------------------VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL---KGHTGT 621 (707)
T ss_pred -------------------------EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh---hcccCc
Confidence 4678999999999999999999999999999999999999887654 469999
Q ss_pred eeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC
Q 001109 707 VLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 707 V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t 757 (1155)
|.+|.|| .||.+||+|+.|.+|++||+..
T Consensus 622 i~SlsFS----------------------~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 622 IYSLSFS----------------------RDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred eeEEEEe----------------------cCCCEEEecCCCCeEEEEEchh
Confidence 9999999 8999999999999999999864
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=1.5e-26 Score=254.75 Aligned_cols=332 Identities=20% Similarity=0.271 Sum_probs=246.8
Q ss_pred cCCCCCceEEEEcCCCC-EEEEEEcCCeEEEEccCC------ceEEEEc---------CCCCCEEEEEEEcCCcEEEEEe
Q 001109 39 YGIPSTASILAFDHVQS-LLAIGTQDGRIKVIGGDN------IEGLLVS---------PKQLAFKHLEFLQNQGFLVSIS 102 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~-lLAsgs~DG~I~vw~~~~------~~~~~~~---------~~~~~V~~l~Fs~dg~~LvS~s 102 (1155)
.+|.++|.+.+|+|-.. +||+|+.|-+.++|+... .+..+.+ +...-|++|+|+.+|..|++++
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 35999999999999887 999999999999998753 1111111 1235799999999999999999
Q ss_pred cCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEee
Q 001109 103 SGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLE 181 (1155)
Q Consensus 103 ~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~ 181 (1155)
.||.+++|+. .|.++.+|..| ++|.++.+...|.||++|+-||++-+|+.-. ++..+ -|.++
T Consensus 255 ~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~--g~~~q-~f~~~------------- 317 (524)
T KOG0273|consen 255 EDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT--GTVKQ-QFEFH------------- 317 (524)
T ss_pred cCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC--ceEEE-eeeec-------------
Confidence 9999999996 57777788766 8999999999999999999999998885433 22210 00000
Q ss_pred EecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccC
Q 001109 182 FCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSE 261 (1155)
Q Consensus 182 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~ 261 (1155)
..+... |.|..+ +.+++.+.||.|+++-+..
T Consensus 318 -----------------------------------s~~~lD-----VdW~~~---------~~F~ts~td~~i~V~kv~~ 348 (524)
T KOG0273|consen 318 -----------------------------------SAPALD-----VDWQSN---------DEFATSSTDGCIHVCKVGE 348 (524)
T ss_pred -----------------------------------cCCccc-----eEEecC---------ceEeecCCCceEEEEEecC
Confidence 111233 677665 3599999999999999887
Q ss_pred CeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCcccc
Q 001109 262 DKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDW 341 (1155)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~ 341 (1155)
..++.... +|.++|.++.|. |.|..|++++.|++++||++....+...
T Consensus 349 ~~P~~t~~------------------------------GH~g~V~alk~n-~tg~LLaS~SdD~TlkiWs~~~~~~~~~- 396 (524)
T KOG0273|consen 349 DRPVKTFI------------------------------GHHGEVNALKWN-PTGSLLASCSDDGTLKIWSMGQSNSVHD- 396 (524)
T ss_pred CCcceeee------------------------------cccCceEEEEEC-CCCceEEEecCCCeeEeeecCCCcchhh-
Confidence 77766522 258899999999 9999999999999999999754321100
Q ss_pred ccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCC
Q 001109 342 KSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERK 421 (1155)
Q Consensus 342 ~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~ 421 (1155)
| ..|...|+.+.|
T Consensus 397 -----------l----~~Hskei~t~~w---------------------------------------------------- 409 (524)
T KOG0273|consen 397 -----------L----QAHSKEIYTIKW---------------------------------------------------- 409 (524)
T ss_pred -----------h----hhhccceeeEee----------------------------------------------------
Confidence 0 011111122211
Q ss_pred CceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCc
Q 001109 422 GSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGK 501 (1155)
Q Consensus 422 ~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~ 501 (1155)
+|.+..
T Consensus 410 ------------------------------------------------------------------------sp~g~v-- 415 (524)
T KOG0273|consen 410 ------------------------------------------------------------------------SPTGPV-- 415 (524)
T ss_pred ------------------------------------------------------------------------cCCCCc--
Confidence 111100
Q ss_pred hhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCC
Q 001109 502 LSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGS 581 (1155)
Q Consensus 502 ~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~ 581 (1155)
. .-...+..+++++.|++|++||+..+. +++++.
T Consensus 416 -------------------------------------~------~n~~~~~~l~sas~dstV~lwdv~~gv--~i~~f~- 449 (524)
T KOG0273|consen 416 -------------------------------------T------SNPNMNLMLASASFDSTVKLWDVESGV--PIHTLM- 449 (524)
T ss_pred -------------------------------------c------CCCcCCceEEEeecCCeEEEEEccCCc--eeEeec-
Confidence 0 001123378999999999999999987 455553
Q ss_pred CcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCC
Q 001109 582 ELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSP 661 (1155)
Q Consensus 582 ~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~ 661 (1155)
.|..||.+|+|+|+|++||+|+.||.|.+|+....+.. .. ..-++.
T Consensus 450 --------kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~-------------------------~s-~~~~~~ 495 (524)
T KOG0273|consen 450 --------KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV-------------------------KS-YQGTGG 495 (524)
T ss_pred --------cCCCceEEEEecCCCcEEEecCCCCeeEeccccchhee-------------------------Ee-ecCCCe
Confidence 78899999999999999999999999999999875421 11 224566
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 001109 662 ICNLKFSNFGARLAVGFECSQVAMLDIS 689 (1155)
Q Consensus 662 VtslafSpdg~~LAsGs~Dg~V~lWDi~ 689 (1155)
|..|+|+-+|..|.+...||.|.+.|++
T Consensus 496 Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 496 IFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999999999999999999975
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=1.1e-26 Score=242.35 Aligned_cols=214 Identities=17% Similarity=0.218 Sum_probs=171.7
Q ss_pred CCCcCCCCcceeeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcC-CCCCEEEEEEEcCCcEEEEEec
Q 001109 25 NLTSKDFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSP-KQLAFKHLEFLQNQGFLVSISS 103 (1155)
Q Consensus 25 ~l~~~~~~~~~~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~-~~~~V~~l~Fs~dg~~LvS~s~ 103 (1155)
.+....++.++++ .||.+.|.++-|++|.++|++++.||.+.|||.-+.......+ ...+|..++|+|.|.++++++-
T Consensus 39 ~~~~i~~~~rr~L-kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGL 117 (343)
T KOG0286|consen 39 SVGRIQMRTRRTL-KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGL 117 (343)
T ss_pred cceeeeeeeEEEe-cccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCc
Confidence 3334456666554 6999999999999999999999999999999986554433332 3579999999999999999999
Q ss_pred CCeEEEEECCCC------ceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeec
Q 001109 104 GNEIQLWDLEAR------RITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFN 176 (1155)
Q Consensus 104 Dg~I~vWDl~t~------~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~ 176 (1155)
||...|+++.++ +....+.+| +.+.|+.|.+ +..|++|+.|.+.-+|+++. ++..+ .|
T Consensus 118 dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~--g~~~~-~f----------- 182 (343)
T KOG0286|consen 118 DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET--GQQTQ-VF----------- 182 (343)
T ss_pred CceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEccc--ceEEE-Ee-----------
Confidence 999999999876 334567777 7899999987 56778999999998986554 43320 00
Q ss_pred eeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEE
Q 001109 177 HLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIIL 256 (1155)
Q Consensus 177 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~l 256 (1155)
.+ |.+.|.+ +.+.|.+ + +.+++|+-|+..+|
T Consensus 183 --------------~G-----------------------H~gDV~s-----lsl~p~~-~------ntFvSg~cD~~akl 213 (343)
T KOG0286|consen 183 --------------HG-----------------------HTGDVMS-----LSLSPSD-G------NTFVSGGCDKSAKL 213 (343)
T ss_pred --------------cC-----------------------CcccEEE-----EecCCCC-C------CeEEecccccceee
Confidence 01 3455666 9999963 4 78999999999999
Q ss_pred EEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 257 WDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 257 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
||++.+.+++... +|+..|.+++|. |+|.-||+|+.|++.|++|++.
T Consensus 214 WD~R~~~c~qtF~------------------------------ghesDINsv~ff-P~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 214 WDVRSGQCVQTFE------------------------------GHESDINSVRFF-PSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred eeccCcceeEeec------------------------------ccccccceEEEc-cCCCeeeecCCCceeEEEeecC
Confidence 9999998887621 268899999999 9999999999999999999875
No 24
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.3e-25 Score=259.17 Aligned_cols=313 Identities=12% Similarity=0.201 Sum_probs=230.4
Q ss_pred CCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceee
Q 001109 83 QLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLI 161 (1155)
Q Consensus 83 ~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~ 161 (1155)
...|+.|+|.|...+++++--.|.|++||.+-+.++..|..| ++|+.++|+|...++++|++|-.|+||+|...+..
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl-- 86 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL-- 86 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh--
Confidence 568999999999999999999999999999999999998766 99999999999999999999999999999885421
Q ss_pred ccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccccccccc
Q 001109 162 HSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLG 241 (1155)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~ 241 (1155)
|++. | |.. +|..+.||+.-
T Consensus 87 ---ftL~-----------------------G-----------------------HlD-----YVRt~~FHhey------- 105 (1202)
T KOG0292|consen 87 ---FTLL-----------------------G-----------------------HLD-----YVRTVFFHHEY------- 105 (1202)
T ss_pred ---hhhc-----------------------c-----------------------ccc-----eeEEeeccCCC-------
Confidence 1111 2 122 23338999974
Q ss_pred ccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEE
Q 001109 242 FSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVG 321 (1155)
Q Consensus 242 ~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg 321 (1155)
.+|++++.|.+|+|||+.+++++.+.++ |.-.|.|+.|+ |....++++
T Consensus 106 -PWIlSASDDQTIrIWNwqsr~~iavltG------------------------------HnHYVMcAqFh-ptEDlIVSa 153 (1202)
T KOG0292|consen 106 -PWILSASDDQTIRIWNWQSRKCIAVLTG------------------------------HNHYVMCAQFH-PTEDLIVSA 153 (1202)
T ss_pred -ceEEEccCCCeEEEEeccCCceEEEEec------------------------------CceEEEeeccC-CccceEEEe
Confidence 4799999999999999999999987443 46689999999 999999999
Q ss_pred EcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEc
Q 001109 322 YVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYL 401 (1155)
Q Consensus 322 ~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l 401 (1155)
+-|.+||+||+....... ..| + +-.+ .++
T Consensus 154 SLDQTVRVWDisGLRkk~---------------------~~p---------------g------~~e~-----~~~---- 182 (1202)
T KOG0292|consen 154 SLDQTVRVWDISGLRKKN---------------------KAP---------------G------SLED-----QMR---- 182 (1202)
T ss_pred cccceEEEEeecchhccC---------------------CCC---------------C------Cchh-----hhh----
Confidence 999999999997642100 000 0 0000 000
Q ss_pred cCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCccc
Q 001109 402 NWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLI 481 (1155)
Q Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~ 481 (1155)
+.. .++.| +-.. ..-....+
T Consensus 183 -~~~-----------------------------------------~~~dL--fg~~----------------DaVVK~VL 202 (1202)
T KOG0292|consen 183 -GQQ-----------------------------------------GNSDL--FGQT----------------DAVVKHVL 202 (1202)
T ss_pred -ccc-----------------------------------------cchhh--cCCc----------------Ceeeeeee
Confidence 000 00000 0000 00001123
Q ss_pred ccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCC
Q 001109 482 PTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDG 561 (1155)
Q Consensus 482 ~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~Dg 561 (1155)
.+|+-.|+.+ +|+|.-.+++||+.|+
T Consensus 203 EGHDRGVNwa------------------------------------------------------AfhpTlpliVSG~DDR 228 (1202)
T KOG0292|consen 203 EGHDRGVNWA------------------------------------------------------AFHPTLPLIVSGADDR 228 (1202)
T ss_pred cccccccceE------------------------------------------------------EecCCcceEEecCCcc
Confidence 3455444433 5556556899999999
Q ss_pred cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEE
Q 001109 562 STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVH 641 (1155)
Q Consensus 562 tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~ 641 (1155)
.||+|..+... .++..+ ..||-..|+++-|+|...++++.++|+++||||+.....
T Consensus 229 qVKlWrmnetK-----aWEvDt----crgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~--------------- 284 (1202)
T KOG0292|consen 229 QVKLWRMNETK-----AWEVDT----CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS--------------- 284 (1202)
T ss_pred eeeEEEecccc-----ceeehh----hhcccCCcceEEecCccceeEecCCCccEEEEecccccc---------------
Confidence 99999886543 122221 349999999999999999999999999999999987432
Q ss_pred EecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 001109 642 ILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDIST 690 (1155)
Q Consensus 642 ~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~ 690 (1155)
+.+|..-++.-++||-.|..+++|+|-+.| +.|+-++.
T Consensus 285 ----------v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VFkleR 322 (1202)
T KOG0292|consen 285 ----------VQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVFKLER 322 (1202)
T ss_pred ----------eeeeeccCCeEEEEEecCCcceeeeecCCc-eEEEEEcc
Confidence 356677788999999999999999888666 55676653
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=3.1e-25 Score=237.94 Aligned_cols=161 Identities=18% Similarity=0.296 Sum_probs=132.5
Q ss_pred CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCce
Q 001109 81 PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGK 159 (1155)
Q Consensus 81 ~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~ 159 (1155)
.|...|.+++.+|+.+++++|+.|..-.||++.++..+..+.+| ..|+++.|+.+|.+||+|+-+|.|+||..+....+
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~ 141 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ 141 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE
Confidence 57889999999999899999999999999999999999999887 78999999999999999999999999977664311
Q ss_pred eeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccccccc
Q 001109 160 LIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNST 239 (1155)
Q Consensus 160 l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~ 239 (1155)
.. +. . .... ++-+.|||..
T Consensus 142 ~~-----~~-----------------------~-----------------------e~~d-----ieWl~WHp~a----- 160 (399)
T KOG0296|consen 142 WK-----LD-----------------------Q-----------------------EVED-----IEWLKWHPRA----- 160 (399)
T ss_pred EE-----ee-----------------------c-----------------------ccCc-----eEEEEecccc-----
Confidence 10 00 0 0011 2228899964
Q ss_pred ccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEE
Q 001109 240 LGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLA 319 (1155)
Q Consensus 240 ~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~la 319 (1155)
..|++|+.||.+-+|.+..+...++.. +|..++++=+|. |||++++
T Consensus 161 ---~illAG~~DGsvWmw~ip~~~~~kv~~------------------------------Gh~~~ct~G~f~-pdGKr~~ 206 (399)
T KOG0296|consen 161 ---HILLAGSTDGSVWMWQIPSQALCKVMS------------------------------GHNSPCTCGEFI-PDGKRIL 206 (399)
T ss_pred ---cEEEeecCCCcEEEEECCCcceeeEec------------------------------CCCCCccccccc-CCCceEE
Confidence 579999999999999999876655521 147889999999 9999999
Q ss_pred EEEcCCcEEEEEcCCCC
Q 001109 320 VGYVDGDILLWNLRAAA 336 (1155)
Q Consensus 320 sg~~DG~I~lWd~~s~~ 336 (1155)
+|+.||+|++||+.++.
T Consensus 207 tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 207 TGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred EEecCceEEEEecCCCc
Confidence 99999999999998763
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.7e-26 Score=245.87 Aligned_cols=326 Identities=15% Similarity=0.190 Sum_probs=241.8
Q ss_pred CCEEEEEEcCCeEEE---EccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeE
Q 001109 54 QSLLAIGTQDGRIKV---IGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITA 129 (1155)
Q Consensus 54 g~lLAsgs~DG~I~v---w~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vts 129 (1155)
+.-|+.|.-.|..+. |.....+.....+++.+|+.+-|.|+-...++++.|.+|++||..+|++...+++| ..|..
T Consensus 76 ~~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~d 155 (406)
T KOG0295|consen 76 GDELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFD 155 (406)
T ss_pred ccccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeE
Confidence 344444443343433 54432222223346889999999999888888899999999999999999999988 67999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCC
Q 001109 130 FSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDE 209 (1155)
Q Consensus 130 va~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (1155)
++|+..|++|++.+.|-.+++|+++.--.++ . .+.+
T Consensus 156 i~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~-------k--------------------s~~g----------------- 191 (406)
T KOG0295|consen 156 ISFDASGKYLATCSSDLSAKLWDFDTFFRCI-------K--------------------SLIG----------------- 191 (406)
T ss_pred EEEecCccEEEecCCccchhheeHHHHHHHH-------H--------------------HhcC-----------------
Confidence 9999999999999999989999877521110 0 0001
Q ss_pred CCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCC
Q 001109 210 SGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGH 289 (1155)
Q Consensus 210 ~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (1155)
+.. .|.++.|-|.+ ++|++++.|.+|+.|+..++-++.+..
T Consensus 192 -------h~h----~vS~V~f~P~g--------d~ilS~srD~tik~We~~tg~cv~t~~-------------------- 232 (406)
T KOG0295|consen 192 -------HEH----GVSSVFFLPLG--------DHILSCSRDNTIKAWECDTGYCVKTFP-------------------- 232 (406)
T ss_pred -------ccc----ceeeEEEEecC--------CeeeecccccceeEEecccceeEEecc--------------------
Confidence 111 23358888974 579999999999999999999987622
Q ss_pred CCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEe
Q 001109 290 NLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHW 369 (1155)
Q Consensus 290 ~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w 369 (1155)
+|...|..+.-+ .||..+|+++.|.+|++|-+.+..+... + ..|..||-.++|
T Consensus 233 ----------~h~ewvr~v~v~-~DGti~As~s~dqtl~vW~~~t~~~k~~--------------l--R~hEh~vEci~w 285 (406)
T KOG0295|consen 233 ----------GHSEWVRMVRVN-QDGTIIASCSNDQTLRVWVVATKQCKAE--------------L--REHEHPVECIAW 285 (406)
T ss_pred ----------CchHhEEEEEec-CCeeEEEecCCCceEEEEEeccchhhhh--------------h--hccccceEEEEe
Confidence 146689999998 9999999999999999999887643211 1 123344444443
Q ss_pred cccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCC
Q 001109 370 SAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPG 449 (1155)
Q Consensus 370 ~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G 449 (1155)
.+..
T Consensus 286 ap~~---------------------------------------------------------------------------- 289 (406)
T KOG0295|consen 286 APES---------------------------------------------------------------------------- 289 (406)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 2200
Q ss_pred eeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCC
Q 001109 450 KLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGST 529 (1155)
Q Consensus 450 ~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~ 529 (1155)
.| +.|+ .+ ++
T Consensus 290 ---~~-------------------------------~~i~---------------------~a-------t~-------- 299 (406)
T KOG0295|consen 290 ---SY-------------------------------PSIS---------------------EA-------TG-------- 299 (406)
T ss_pred ---cC-------------------------------cchh---------------------hc-------cC--------
Confidence 00 0000 00 00
Q ss_pred ccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEE
Q 001109 530 TKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAI 609 (1155)
Q Consensus 530 ~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Las 609 (1155)
. ...++++.+|+.|++||+||+.++. ++++|. ||..+|..++|+|.|++|++
T Consensus 300 --------~---------~~~~~~l~s~SrDktIk~wdv~tg~--cL~tL~---------ghdnwVr~~af~p~Gkyi~S 351 (406)
T KOG0295|consen 300 --------S---------TNGGQVLGSGSRDKTIKIWDVSTGM--CLFTLV---------GHDNWVRGVAFSPGGKYILS 351 (406)
T ss_pred --------C---------CCCccEEEeecccceEEEEeccCCe--EEEEEe---------cccceeeeeEEcCCCeEEEE
Confidence 0 0124579999999999999999986 455554 89999999999999999999
Q ss_pred EeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEec
Q 001109 610 GSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDI 688 (1155)
Q Consensus 610 gs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi 688 (1155)
+.+|+++++||+... +|..++..|..=|+++.|..+-.++++|+-|-++++|.-
T Consensus 352 caDDktlrvwdl~~~-------------------------~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 352 CADDKTLRVWDLKNL-------------------------QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EecCCcEEEEEeccc-------------------------eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999874 345667789999999999999999999999999999963
No 27
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=1e-24 Score=254.02 Aligned_cols=466 Identities=14% Similarity=0.137 Sum_probs=317.6
Q ss_pred ceEEEEcCCC--CEEEEEEcCCeEEEEccCCceEEEEcCC-CCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeee
Q 001109 45 ASILAFDHVQ--SLLAIGTQDGRIKVIGGDNIEGLLVSPK-QLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTL 121 (1155)
Q Consensus 45 vs~lafsp~g--~lLAsgs~DG~I~vw~~~~~~~~~~~~~-~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l 121 (1155)
|++| ++|.- +-+.+|+..|+++||+......++++.+ ...|+++.=+|-=..++.|..+|+|.+.|+..++.+.++
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 5544 34443 5678999999999999999888888754 678999988886556777889999999999999999999
Q ss_pred cCC-CceeEEEEecCCC-EEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccc
Q 001109 122 PWE-SNITAFSVIFGTS-YMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNAS 199 (1155)
Q Consensus 122 ~~~-~~Vtsva~spd~~-~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~ 199 (1155)
+.. ++|++++|.-||+ .|++|+..|.+.+|+++.. ++... +. .
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k--kl~~v---~~-----------------------n------- 285 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK--KLINV---TR-----------------------N------- 285 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC--eeeee---ee-----------------------c-------
Confidence 986 9999999999988 5778888899999976653 33200 00 0
Q ss_pred eeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCe----EEEEeccccccc
Q 001109 200 LLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDK----VVLVRGSKDLQL 275 (1155)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~----~~~~~~~~~~~~ 275 (1155)
+ +.+.+.+ +.|.|..+ .+++++.|+.+++|=..++. .++.|+
T Consensus 286 ---------a------h~~sv~~-----~~fl~~ep--------Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~------ 331 (910)
T KOG1539|consen 286 ---------A------HYGSVTG-----ATFLPGEP--------VLVTAGADNSLKVWVFDSGDGVPRLLRSRG------ 331 (910)
T ss_pred ---------c------ccCCccc-----ceecCCCc--------eEeeccCCCceeEEEeeCCCCcchheeecc------
Confidence 0 2344555 77777654 59999999999998665443 333322
Q ss_pred ccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccc-cccCCCCCCccccc
Q 001109 276 KTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKD-WKSENSSTDFGKLQ 354 (1155)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~-~~~~~~~~~i~kl~ 354 (1155)
+|..+..++.|....|..+.+++.|++++.+++......+. .+ ........|+.
T Consensus 332 ------------------------GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-~~~~~~~kk~~ 386 (910)
T KOG1539|consen 332 ------------------------GHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-LHNKKRAKKVN 386 (910)
T ss_pred ------------------------CCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-ccccccccccc
Confidence 25788899999867899999999999999888765432211 00 00000111111
Q ss_pred ccC--CCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecC------CCceeE
Q 001109 355 LSS--GNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLER------KGSFVD 426 (1155)
Q Consensus 355 l~~--~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~------~~~v~d 426 (1155)
... ...-.||..+++...+ ......+++.--++ ...+.|.+.-.. .++..+.+ ...+..
T Consensus 387 ~~~~~~~k~p~i~~fa~~~~R--E~~W~Nv~~~h~~~----~~~~tW~~~n~~-------~G~~~L~~~~~~~~~~~~~a 453 (910)
T KOG1539|consen 387 VFSTEKLKLPPIVEFAFENAR--EKEWDNVITAHKGK----RSAYTWNFRNKT-------SGRHVLDPKRFKKDDINATA 453 (910)
T ss_pred ccchhhhcCCcceeeecccch--hhhhcceeEEecCc----ceEEEEeccCcc-------cccEEecCccccccCcceEE
Confidence 110 0122456666543211 11222222222211 334444432111 11222222 245555
Q ss_pred EEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHH
Q 001109 427 MVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVEL 506 (1155)
Q Consensus 427 ~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~ 506 (1155)
++..+.++ ..+++...|.|.+|+.++....-++. .-+.|...|+.++.
T Consensus 454 v~vs~CGN------F~~IG~S~G~Id~fNmQSGi~r~sf~-------------~~~ah~~~V~gla~------------- 501 (910)
T KOG1539|consen 454 VCVSFCGN------FVFIGYSKGTIDRFNMQSGIHRKSFG-------------DSPAHKGEVTGLAV------------- 501 (910)
T ss_pred EEEeccCc------eEEEeccCCeEEEEEcccCeeecccc-------------cCccccCceeEEEe-------------
Confidence 55555443 67788888999999875332211110 11234444444432
Q ss_pred HHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCcc
Q 001109 507 SKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGI 586 (1155)
Q Consensus 507 ~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i 586 (1155)
..-+++++|++.||-+++||.....+ +..+.
T Consensus 502 -----------------------------------------D~~n~~~vsa~~~Gilkfw~f~~k~l--~~~l~------ 532 (910)
T KOG1539|consen 502 -----------------------------------------DGTNRLLVSAGADGILKFWDFKKKVL--KKSLR------ 532 (910)
T ss_pred -----------------------------------------cCCCceEEEccCcceEEEEecCCcce--eeeec------
Confidence 23356899999999999999987763 22222
Q ss_pred ccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEE
Q 001109 587 RTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLK 666 (1155)
Q Consensus 587 ~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vtsla 666 (1155)
+ + .+++++..+....++|++.+|=.|+++|..+... +..|.+|.+.|++++
T Consensus 533 -l-~--~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv-------------------------vR~f~gh~nritd~~ 583 (910)
T KOG1539|consen 533 -L-G--SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV-------------------------VREFWGHGNRITDMT 583 (910)
T ss_pred -c-C--CCcceeeeeehhhhhhhhcCceeEEEEEchhhhh-------------------------hHHhhccccceeeeE
Confidence 1 1 3788888999999999999999999999987432 245789999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeC
Q 001109 667 FSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTK 746 (1155)
Q Consensus 667 fSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~ 746 (1155)
|||||++|++++.|++|++||+-++.++-... ...+.++|.|+ |.|.+|+++..
T Consensus 584 FS~DgrWlisasmD~tIr~wDlpt~~lID~~~----vd~~~~sls~S----------------------PngD~LAT~Hv 637 (910)
T KOG1539|consen 584 FSPDGRWLISASMDSTIRTWDLPTGTLIDGLL----VDSPCTSLSFS----------------------PNGDFLATVHV 637 (910)
T ss_pred eCCCCcEEEEeecCCcEEEEeccCcceeeeEe----cCCcceeeEEC----------------------CCCCEEEEEEe
Confidence 99999999999999999999999998886553 47899999999 88999999999
Q ss_pred C-ceEEEEE
Q 001109 747 D-AHIVVCD 754 (1155)
Q Consensus 747 D-g~I~vwd 754 (1155)
| .-|.+|-
T Consensus 638 d~~gIylWs 646 (910)
T KOG1539|consen 638 DQNGIYLWS 646 (910)
T ss_pred cCceEEEEE
Confidence 9 6788885
No 28
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=1.9e-25 Score=232.19 Aligned_cols=205 Identities=15% Similarity=0.178 Sum_probs=168.6
Q ss_pred cCCCCCceEEEEcCCC-CEEEEEEcCCeEEEEccCCce-----EEEE-cCCCCCEEEEEEEcCCcEEEEEecCCeEEEEE
Q 001109 39 YGIPSTASILAFDHVQ-SLLAIGTQDGRIKVIGGDNIE-----GLLV-SPKQLAFKHLEFLQNQGFLVSISSGNEIQLWD 111 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g-~lLAsgs~DG~I~vw~~~~~~-----~~~~-~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWD 111 (1155)
.||++.|+.++..+.+ ++|.+++.|.+|.+|+..... .+.. .+|...|..+..++||.+.++++.|+++++||
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD 91 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD 91 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence 6999999999999984 699999999999999864321 1222 24678999999999999999999999999999
Q ss_pred CCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccc
Q 001109 112 LEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQRE 190 (1155)
Q Consensus 112 l~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~ 190 (1155)
+++++..+.|.+| ..|.+++|++|.+.+++|+.|.+|.+|+.-... .|++...
T Consensus 92 l~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c------k~t~~~~-------------------- 145 (315)
T KOG0279|consen 92 LATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC------KYTIHED-------------------- 145 (315)
T ss_pred ecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE------EEEEecC--------------------
Confidence 9999999999998 689999999999999999999999999653321 1333211
Q ss_pred ccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecc
Q 001109 191 KGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGS 270 (1155)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~ 270 (1155)
+. . ..|.++.|+|+... ..|++++.|++|++||+++.++....-
T Consensus 146 ---------------------------~~-~-~WVscvrfsP~~~~------p~Ivs~s~DktvKvWnl~~~~l~~~~~- 189 (315)
T KOG0279|consen 146 ---------------------------SH-R-EWVSCVRFSPNESN------PIIVSASWDKTVKVWNLRNCQLRTTFI- 189 (315)
T ss_pred ---------------------------CC-c-CcEEEEEEcCCCCC------cEEEEccCCceEEEEccCCcchhhccc-
Confidence 10 1 25667999998543 579999999999999998877654311
Q ss_pred cccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 271 KDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
+|.+.|+.++++ |||+..++|+.||.+.+||++.+
T Consensus 190 -----------------------------gh~~~v~t~~vS-pDGslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 190 -----------------------------GHSGYVNTVTVS-PDGSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred -----------------------------cccccEEEEEEC-CCCCEEecCCCCceEEEEEccCC
Confidence 258899999999 99999999999999999999765
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=8.1e-25 Score=281.06 Aligned_cols=154 Identities=16% Similarity=0.120 Sum_probs=120.5
Q ss_pred cCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccc
Q 001109 550 VERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEET 629 (1155)
Q Consensus 550 ~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~ 629 (1155)
++.+|++|+.||+|++||+..+.. ++..+ .+|...|+++.|. ++.+|++|+.||+|++||+......
T Consensus 629 ~g~~latgs~dg~I~iwD~~~~~~-~~~~~---------~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~-- 695 (793)
T PLN00181 629 SGRSLAFGSADHKVYYYDLRNPKL-PLCTM---------IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG-- 695 (793)
T ss_pred CCCEEEEEeCCCeEEEEECCCCCc-cceEe---------cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc--
Confidence 455899999999999999976541 12222 2788899999997 7889999999999999999753210
Q ss_pred eeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEec----------c
Q 001109 630 LNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITD----------S 699 (1155)
Q Consensus 630 ~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~----------~ 699 (1155)
....++..+.+|...+++++|+|++++||+|+.||.|+||+...+..+.... .
T Consensus 696 -----------------~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~ 758 (793)
T PLN00181 696 -----------------INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLE 758 (793)
T ss_pred -----------------cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccc
Confidence 0112345678999999999999999999999999999999987654332110 0
Q ss_pred CCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC
Q 001109 700 LSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 700 ~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
...|...|.+++|+ |++..|++|+.||+|+|||.
T Consensus 759 ~~~~~~~V~~v~ws----------------------~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 759 VDDASQFISSVCWR----------------------GQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCcEEEEEEEc----------------------CCCCeEEEecCCCcEEEEec
Confidence 12355679999998 88999999999999999985
No 30
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.1e-23 Score=233.29 Aligned_cols=406 Identities=16% Similarity=0.220 Sum_probs=274.0
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCC--------eEEEEccCCceEEEEcC-CCCCEEEEEEEcC-C-cEEEEEe--cCC
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDG--------RIKVIGGDNIEGLLVSP-KQLAFKHLEFLQN-Q-GFLVSIS--SGN 105 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG--------~I~vw~~~~~~~~~~~~-~~~~V~~l~Fs~d-g-~~LvS~s--~Dg 105 (1155)
.||...|.|++.+|+--++|+|...| .|++||.....-+.... ....|.+++|++- + .+|...+ .+.
T Consensus 101 ~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h 180 (626)
T KOG2106|consen 101 LGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPH 180 (626)
T ss_pred cCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCcc
Confidence 59999999999999999999888777 49999977665554443 2457999999883 3 3555554 345
Q ss_pred eEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEec
Q 001109 106 EIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCP 184 (1155)
Q Consensus 106 ~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p 184 (1155)
-+-|||+..+......+.. ..|..+.|+|.+..|.+....|.+++|.+.. +.+..+-
T Consensus 181 ~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~--~~l~k~~-------------------- 238 (626)
T KOG2106|consen 181 MLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG--GSLVKRQ-------------------- 238 (626)
T ss_pred ccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC--CceEEEe--------------------
Confidence 6899999988777665543 6788899999999888888899999995544 2232100
Q ss_pred ccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeE
Q 001109 185 NHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKV 264 (1155)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~ 264 (1155)
+ +|. ...+ .+|.+++|.++++ +++|.++|.|.||+..+.+.
T Consensus 239 -------~---------~fe-----------k~ek---k~Vl~v~F~engd---------viTgDS~G~i~Iw~~~~~~~ 279 (626)
T KOG2106|consen 239 -------G---------IFE-----------KREK---KFVLCVTFLENGD---------VITGDSGGNILIWSKGTNRI 279 (626)
T ss_pred -------e---------ccc-----------cccc---eEEEEEEEcCCCC---------EEeecCCceEEEEeCCCceE
Confidence 0 000 0111 2566699999854 99999999999999977666
Q ss_pred EEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccC
Q 001109 265 VLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSE 344 (1155)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~ 344 (1155)
.+. .+ .|++.|.++|.. .+|+.| +|+.|..|..||- .-...+
T Consensus 280 ~k~-------~~-----------------------aH~ggv~~L~~l-r~Gtll-SGgKDRki~~Wd~-~y~k~r----- 321 (626)
T KOG2106|consen 280 SKQ-------VH-----------------------AHDGGVFSLCML-RDGTLL-SGGKDRKIILWDD-NYRKLR----- 321 (626)
T ss_pred EeE-------ee-----------------------ecCCceEEEEEe-cCccEe-ecCccceEEeccc-cccccc-----
Confidence 543 01 168899999998 888855 5999999999992 111111
Q ss_pred CCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCce
Q 001109 345 NSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSF 424 (1155)
Q Consensus 345 ~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v 424 (1155)
.+.+ .+...||+.++ .+.++ +
T Consensus 322 -------~~el--Pe~~G~iRtv~-------e~~~d-i------------------------------------------ 342 (626)
T KOG2106|consen 322 -------ETEL--PEQFGPIRTVA-------EGKGD-I------------------------------------------ 342 (626)
T ss_pred -------cccC--chhcCCeeEEe-------cCCCc-E------------------------------------------
Confidence 0111 12233444441 00111 1
Q ss_pred eEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhH
Q 001109 425 VDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSV 504 (1155)
Q Consensus 425 ~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~ 504 (1155)
++.+..+.|..=... ..+.....+|.
T Consensus 343 ------------------~vGTtrN~iL~Gt~~-----------------~~f~~~v~gh~------------------- 368 (626)
T KOG2106|consen 343 ------------------LVGTTRNFILQGTLE-----------------NGFTLTVQGHG------------------- 368 (626)
T ss_pred ------------------EEeeccceEEEeeec-----------------CCceEEEEecc-------------------
Confidence 222222222110000 00000000010
Q ss_pred HHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcC
Q 001109 505 ELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELP 584 (1155)
Q Consensus 505 ~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~ 584 (1155)
...| .+ +.+|+.++|+|+++|+.|++|+ ..++ +.... +
T Consensus 369 ------------------------delw----------gl-a~hps~~q~~T~gqdk~v~lW~--~~k~--~wt~~--~- 406 (626)
T KOG2106|consen 369 ------------------------DELW----------GL-ATHPSKNQLLTCGQDKHVRLWN--DHKL--EWTKI--I- 406 (626)
T ss_pred ------------------------ccee----------eE-EcCCChhheeeccCcceEEEcc--CCce--eEEEE--e-
Confidence 1112 13 6678888999999999999999 3332 22211 1
Q ss_pred ccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEE
Q 001109 585 GIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICN 664 (1155)
Q Consensus 585 ~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vts 664 (1155)
..++.|++|.|.| .+|+|+..|...+.|.++... ..+..-+.++++
T Consensus 407 -------~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l--------------------------v~~~~d~~~ls~ 452 (626)
T KOG2106|consen 407 -------EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDL--------------------------VTIHTDNEQLSV 452 (626)
T ss_pred -------cCceeEeeccCcc-eEEEeeccceEEEEeccccee--------------------------EEEEecCCceEE
Confidence 1389999999999 999999999999999887321 122333789999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCccEEEE-eccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEE
Q 001109 665 LKFSNFGARLAVGFECSQVAMLDISTFSVLFI-TDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFF 743 (1155)
Q Consensus 665 lafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~-~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s 743 (1155)
|+|||||.+||+|+.|+.|.|+-+......+. .... |.++|++|.|| +|+++|.+
T Consensus 453 v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~--~gs~ithLDwS----------------------~Ds~~~~~ 508 (626)
T KOG2106|consen 453 VRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC--SGSPITHLDWS----------------------SDSQFLVS 508 (626)
T ss_pred EEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee--cCceeEEeeec----------------------CCCceEEe
Confidence 99999999999999999999999976544433 2222 44999999999 78999999
Q ss_pred EeCCceEEEEECC
Q 001109 744 MTKDAHIVVCDST 756 (1155)
Q Consensus 744 ~s~Dg~I~vwd~~ 756 (1155)
-|-|-.|..|...
T Consensus 509 ~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 509 NSGDYEILYWKPS 521 (626)
T ss_pred ccCceEEEEEccc
Confidence 9999999999544
No 31
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=1.4e-25 Score=239.04 Aligned_cols=201 Identities=17% Similarity=0.254 Sum_probs=172.5
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcC-CCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCce
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSP-KQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRI 117 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~-~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~ 117 (1155)
.||.+-|.|++++|..+++|+|+.|++|+|||..+++..+++. |...|+.|+||+--.||++++.|+.|+.|||+..+.
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV 227 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhh
Confidence 6999999999999999999999999999999999988877765 778999999999999999999999999999999999
Q ss_pred eeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccc
Q 001109 118 TSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAF 196 (1155)
Q Consensus 118 ~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~ 196 (1155)
++.+-+| +.|.|++.+|..+.|++|+.|.+++||++-+... + ..+ .|
T Consensus 228 IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~--V--------~~l------------------~G---- 275 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS--V--------HVL------------------SG---- 275 (460)
T ss_pred HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce--E--------EEe------------------cC----
Confidence 9998888 8999999999999999999999999996655321 0 000 11
Q ss_pred ccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccc
Q 001109 197 NASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLK 276 (1155)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~ 276 (1155)
+..+|.+ +.++|.++ ++++|+.|++|+|||+..|+......+
T Consensus 276 -------------------H~~~V~~-----V~~~~~dp--------qvit~S~D~tvrlWDl~agkt~~tlt~------ 317 (460)
T KOG0285|consen 276 -------------------HTNPVAS-----VMCQPTDP--------QVITGSHDSTVRLWDLRAGKTMITLTH------ 317 (460)
T ss_pred -------------------CCCccee-----EEeecCCC--------ceEEecCCceEEEeeeccCceeEeeec------
Confidence 2445555 88888764 599999999999999999998776332
Q ss_pred cccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 277 TEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
|...|.++|.+ |+-..+|+++.| .|+-|+++.+
T Consensus 318 ------------------------hkksvral~lh-P~e~~fASas~d-nik~w~~p~g 350 (460)
T KOG0285|consen 318 ------------------------HKKSVRALCLH-PKENLFASASPD-NIKQWKLPEG 350 (460)
T ss_pred ------------------------ccceeeEEecC-CchhhhhccCCc-cceeccCCcc
Confidence 58889999999 999999999988 5788877654
No 32
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=6.6e-24 Score=247.38 Aligned_cols=472 Identities=14% Similarity=0.175 Sum_probs=298.5
Q ss_pred CCCEEEEEEcCCeEEEEccCCc-eE--E--EEcCCC-CCEEEEEEEcCC--cEEEEEecCCeEEEEECCCCceeeeecCC
Q 001109 53 VQSLLAIGTQDGRIKVIGGDNI-EG--L--LVSPKQ-LAFKHLEFLQNQ--GFLVSISSGNEIQLWDLEARRITSTLPWE 124 (1155)
Q Consensus 53 ~g~lLAsgs~DG~I~vw~~~~~-~~--~--~~~~~~-~~V~~l~Fs~dg--~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~ 124 (1155)
-|..|.++..++.++||+.... +- + ...+.. .-|++| +.|.- +.++.|+.+|.+++||+.+++.+++++..
T Consensus 123 fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~ 201 (910)
T KOG1539|consen 123 FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEF 201 (910)
T ss_pred ecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEeccc
Confidence 3555556666777888875542 11 0 111111 125554 45542 24888999999999999999999999854
Q ss_pred -CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeee
Q 001109 125 -SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFY 203 (1155)
Q Consensus 125 -~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 203 (1155)
+.||++.-+|--+.+++|..+|+|.++++-.+. .+ +.|+..
T Consensus 202 ~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk--il-~sFk~d----------------------------------- 243 (910)
T KOG1539|consen 202 FSRITAIEQSPALDVVAIGLENGTVIIFNLKFDK--IL-MSFKQD----------------------------------- 243 (910)
T ss_pred ccceeEeccCCcceEEEEeccCceEEEEEcccCc--EE-EEEEcc-----------------------------------
Confidence 899999999999999999999999988765543 11 011110
Q ss_pred cCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCC
Q 001109 204 CMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDP 283 (1155)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (1155)
.++ |++++|..|+. ..|++|...|.+.+||+...+++.+. +
T Consensus 244 -------------~g~-----VtslSFrtDG~-------p~las~~~~G~m~~wDLe~kkl~~v~-------~------- 284 (910)
T KOG1539|consen 244 -------------WGR-----VTSLSFRTDGN-------PLLASGRSNGDMAFWDLEKKKLINVT-------R------- 284 (910)
T ss_pred -------------ccc-----eeEEEeccCCC-------eeEEeccCCceEEEEEcCCCeeeeee-------e-------
Confidence 133 44499988865 47888999999999999988876541 1
Q ss_pred CCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCcc
Q 001109 284 SKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLP 363 (1155)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~p 363 (1155)
..|.+.|+.+.|- +.-..+++++.|..+++|-.+++..... +.=...+|..|
T Consensus 285 ---------------nah~~sv~~~~fl-~~epVl~ta~~DnSlk~~vfD~~dg~pR------------~LR~R~GHs~P 336 (910)
T KOG1539|consen 285 ---------------NAHYGSVTGATFL-PGEPVLVTAGADNSLKVWVFDSGDGVPR------------LLRSRGGHSAP 336 (910)
T ss_pred ---------------ccccCCcccceec-CCCceEeeccCCCceeEEEeeCCCCcch------------heeeccCCCCC
Confidence 0146778899997 8889999999999999997775543111 11112356666
Q ss_pred EEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccc------eeceeeeec-----CCCceeEEEEecC
Q 001109 364 VITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESL------KCIGRVDLE-----RKGSFVDMVLLPN 432 (1155)
Q Consensus 364 I~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~------~~~~~~~l~-----~~~~v~d~~~~~~ 432 (1155)
-..+.|-. ..++.+.+.+.| ..++.+++....-...+ +...+.-+. .-.++..|.+-..
T Consensus 337 p~~irfy~------~~g~~ilsa~~D----rt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~ 406 (910)
T KOG1539|consen 337 PSCIRFYG------SQGHFILSAKQD----RTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENA 406 (910)
T ss_pred chheeeec------cCcEEEEecccC----cchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccc
Confidence 55555432 344445555443 22322222110000000 000000000 0011111111100
Q ss_pred CCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHh
Q 001109 433 GMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSA 512 (1155)
Q Consensus 433 ~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~ 512 (1155)
. ...-...+.+-...-+++.|+.+.-. ..++.
T Consensus 407 R-E~~W~Nv~~~h~~~~~~~tW~~~n~~-----------------------------~G~~~------------------ 438 (910)
T KOG1539|consen 407 R-EKEWDNVITAHKGKRSAYTWNFRNKT-----------------------------SGRHV------------------ 438 (910)
T ss_pred h-hhhhcceeEEecCcceEEEEeccCcc-----------------------------cccEE------------------
Confidence 0 00000111111111223333321000 00000
Q ss_pred hccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCC
Q 001109 513 AKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATES 592 (1155)
Q Consensus 513 ~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~ 592 (1155)
+.... ..--.....++ +.++.|++.+-|+..|+|.+++++.+..+..|. +...|.
T Consensus 439 -------------L~~~~---~~~~~~~~~av-~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~--------~~~ah~ 493 (910)
T KOG1539|consen 439 -------------LDPKR---FKKDDINATAV-CVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG--------DSPAHK 493 (910)
T ss_pred -------------ecCcc---ccccCcceEEE-EEeccCceEEEeccCCeEEEEEcccCeeecccc--------cCcccc
Confidence 00000 00000112233 678889999999999999999999886432221 112688
Q ss_pred CCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCC
Q 001109 593 ESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGA 672 (1155)
Q Consensus 593 ~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~ 672 (1155)
.+|+.|+.+.-++.+++++.+|.+++|++.+.... ..+ ....+++++.++....
T Consensus 494 ~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~-------------------------~~l-~l~~~~~~iv~hr~s~ 547 (910)
T KOG1539|consen 494 GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK-------------------------KSL-RLGSSITGIVYHRVSD 547 (910)
T ss_pred CceeEEEecCCCceEEEccCcceEEEEecCCccee-------------------------eee-ccCCCcceeeeeehhh
Confidence 89999999999999999999999999999875321 111 1345788899999999
Q ss_pred EEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEE
Q 001109 673 RLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVV 752 (1155)
Q Consensus 673 ~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~v 752 (1155)
.+|++..|=.|+|+|+.+.++++. +.||++.|++++|| |||++|++++.|++|++
T Consensus 548 l~a~~~ddf~I~vvD~~t~kvvR~---f~gh~nritd~~FS----------------------~DgrWlisasmD~tIr~ 602 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDVVTRKVVRE---FWGHGNRITDMTFS----------------------PDGRWLISASMDSTIRT 602 (910)
T ss_pred hhhhhcCceeEEEEEchhhhhhHH---hhccccceeeeEeC----------------------CCCcEEEEeecCCcEEE
Confidence 999999999999999999888764 46899999999999 99999999999999999
Q ss_pred EECCCCceeeee
Q 001109 753 CDSTTGHILFSR 764 (1155)
Q Consensus 753 wd~~tG~~l~~~ 764 (1155)
||+.||.+|...
T Consensus 603 wDlpt~~lID~~ 614 (910)
T KOG1539|consen 603 WDLPTGTLIDGL 614 (910)
T ss_pred EeccCcceeeeE
Confidence 999999999876
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=2.5e-24 Score=276.47 Aligned_cols=199 Identities=14% Similarity=0.186 Sum_probs=154.7
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCc--------eEEEEcCCCCCEEEEEEEcC-CcEEEEEecCCeEEEE
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNI--------EGLLVSPKQLAFKHLEFLQN-QGFLVSISSGNEIQLW 110 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~--------~~~~~~~~~~~V~~l~Fs~d-g~~LvS~s~Dg~I~vW 110 (1155)
+|.+.|++++|+|+|++||+|+.||.|+||+.... .......+...|..++|++. +.+|++++.|++|+||
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 48889999999999999999999999999986431 01122233567899999874 6789999999999999
Q ss_pred ECCCCceeeeecCC-CceeEEEEec-CCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccc
Q 001109 111 DLEARRITSTLPWE-SNITAFSVIF-GTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQ 188 (1155)
Q Consensus 111 Dl~t~~~~~~l~~~-~~Vtsva~sp-d~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~ 188 (1155)
|+.+++.+..+..| +.|++++|+| ++.+|++|+.||+|++|++.... .. ..+
T Consensus 561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--~~---~~~--------------------- 614 (793)
T PLN00181 561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--SI---GTI--------------------- 614 (793)
T ss_pred ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--EE---EEE---------------------
Confidence 99999998888877 7899999996 78999999999999999765422 11 000
Q ss_pred ccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeE-EEE
Q 001109 189 REKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKV-VLV 267 (1155)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~-~~~ 267 (1155)
..+..+.+ +.|++.+ + .+|++|+.||.|++||+..++. +..
T Consensus 615 --------------------------~~~~~v~~-----v~~~~~~-g------~~latgs~dg~I~iwD~~~~~~~~~~ 656 (793)
T PLN00181 615 --------------------------KTKANICC-----VQFPSES-G------RSLAFGSADHKVYYYDLRNPKLPLCT 656 (793)
T ss_pred --------------------------ecCCCeEE-----EEEeCCC-C------CEEEEEeCCCeEEEEECCCCCccceE
Confidence 01122334 7886643 4 6899999999999999987652 222
Q ss_pred ecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 268 RGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
. . .|...|+++.|. ++..|++|+.||+|++||+..
T Consensus 657 ~-------~-----------------------~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 657 M-------I-----------------------GHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred e-------c-----------------------CCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCC
Confidence 0 0 147789999996 788999999999999999864
No 34
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.3e-24 Score=250.98 Aligned_cols=226 Identities=12% Similarity=0.171 Sum_probs=168.4
Q ss_pred CCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeee
Q 001109 42 PSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITST 120 (1155)
Q Consensus 42 ~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~ 120 (1155)
.+.|..|+|+|..=++.++-..|.|++||..=..++..+ .|.+||+.+.|.|.+.++|||++|-.|+||+..+++|+.+
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft 88 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT 88 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence 356888999999999999999999999998755555444 5789999999999999999999999999999999999999
Q ss_pred ecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccc
Q 001109 121 LPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNAS 199 (1155)
Q Consensus 121 l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~ 199 (1155)
+.+| ..|+.+.|++.-.|++++++|.+|+||+|..+..--+ +.|
T Consensus 89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iav----------------------------ltG------- 133 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAV----------------------------LTG------- 133 (1202)
T ss_pred hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEE----------------------------Eec-------
Confidence 9999 8999999999999999999999999999988542110 001
Q ss_pred eeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEE-ecccccccccc
Q 001109 200 LLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLV-RGSKDLQLKTE 278 (1155)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~-~~~~~~~~~~~ 278 (1155)
|.. +|-|..|+|..+ .+++|+-|.+||+||+..-+.-.. -+..+.++..+
T Consensus 134 ----------------HnH-----YVMcAqFhptED--------lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~ 184 (1202)
T KOG0292|consen 134 ----------------HNH-----YVMCAQFHPTED--------LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ 184 (1202)
T ss_pred ----------------Cce-----EEEeeccCCccc--------eEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence 223 444599999754 699999999999999864322111 11112222211
Q ss_pred cccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 279 IVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
....-.-+..+-.-+.+++ +|...|..++|+ |.-..|++|+.|..|++|.+..
T Consensus 185 ~~~~dLfg~~DaVVK~VLE--GHDRGVNwaAfh-pTlpliVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 185 QGNSDLFGQTDAVVKHVLE--GHDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred ccchhhcCCcCeeeeeeec--ccccccceEEec-CCcceEEecCCcceeeEEEecc
Confidence 0000000000111122333 688889999999 8889999999999999997753
No 35
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=2.7e-25 Score=259.44 Aligned_cols=238 Identities=18% Similarity=0.237 Sum_probs=196.9
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCCc--------------------------------eEEEEcCCCCCEEEEE
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDNI--------------------------------EGLLVSPKQLAFKHLE 90 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~--------------------------------~~~~~~~~~~~V~~l~ 90 (1155)
..++|..|++|+.+||.|..|-.|++|-.... ......+|.+||..+.
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS 458 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence 46899999999999999999999999954420 1111235789999999
Q ss_pred EEcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccC
Q 001109 91 FLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPK 169 (1155)
Q Consensus 91 Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~ 169 (1155)
|+|+.++|+++|.|.+||+|.+++..++-.+++| .+|..+.|+|-|-|+|+|+.|++-++|..|... |.+|..
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~------PlRifa 532 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK------PLRIFA 532 (707)
T ss_pred ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC------chhhhc
Confidence 9999999999999999999999999999999988 789999999999999999999999999777522 333322
Q ss_pred CceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEE
Q 001109 170 DVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVY 249 (1155)
Q Consensus 170 ~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~ 249 (1155)
+ +...|-+ +.|||+. +++++|+
T Consensus 533 ----------------------g-----------------------hlsDV~c-----v~FHPNs--------~Y~aTGS 554 (707)
T KOG0263|consen 533 ----------------------G-----------------------HLSDVDC-----VSFHPNS--------NYVATGS 554 (707)
T ss_pred ----------------------c-----------------------cccccce-----EEECCcc--------cccccCC
Confidence 1 2334444 9999986 4699999
Q ss_pred cCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEE
Q 001109 250 ANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILL 329 (1155)
Q Consensus 250 ~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~l 329 (1155)
.|.+||+||+.+|..+++.. +|.++|++++|+ |+|++||+|+.||.|++
T Consensus 555 sD~tVRlWDv~~G~~VRiF~------------------------------GH~~~V~al~~S-p~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 555 SDRTVRLWDVSTGNSVRIFT------------------------------GHKGPVTALAFS-PCGRYLASGDEDGLIKI 603 (707)
T ss_pred CCceEEEEEcCCCcEEEEec------------------------------CCCCceEEEEEc-CCCceEeecccCCcEEE
Confidence 99999999999999988732 268999999999 99999999999999999
Q ss_pred EEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEcc
Q 001109 330 WNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLN 402 (1155)
Q Consensus 330 Wd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~ 402 (1155)
||+.++..... ..+|+.-|.++.|+. +|.++++||.| +.+++|++.
T Consensus 604 WDl~~~~~v~~----------------l~~Ht~ti~SlsFS~-------dg~vLasgg~D----nsV~lWD~~ 649 (707)
T KOG0263|consen 604 WDLANGSLVKQ----------------LKGHTGTIYSLSFSR-------DGNVLASGGAD----NSVRLWDLT 649 (707)
T ss_pred EEcCCCcchhh----------------hhcccCceeEEEEec-------CCCEEEecCCC----CeEEEEEch
Confidence 99998754322 235678899998874 67788888876 789998764
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.8e-24 Score=219.76 Aligned_cols=205 Identities=15% Similarity=0.181 Sum_probs=162.6
Q ss_pred eccCCCCCceEEEEcCC-CCEEEEEEcCCeEEEEccCC---ceEEEEc--CCCCCEEEEEEEcCCcEEEEEecCCeEEEE
Q 001109 37 LHYGIPSTASILAFDHV-QSLLAIGTQDGRIKVIGGDN---IEGLLVS--PKQLAFKHLEFLQNQGFLVSISSGNEIQLW 110 (1155)
Q Consensus 37 ~~~G~~~~vs~lafsp~-g~lLAsgs~DG~I~vw~~~~---~~~~~~~--~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vW 110 (1155)
.+.||.+.+..+|++|- |.+||+|+.|..|++|+... ..+...+ .|+..|+.++|+|.|++|+++|.|.++-||
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIW 88 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEe
Confidence 45799999999999998 89999999999999999873 3333222 467899999999999999999999999999
Q ss_pred ECCCC--ceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccc
Q 001109 111 DLEAR--RITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHI 187 (1155)
Q Consensus 111 Dl~t~--~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~ 187 (1155)
.=..+ +++.++++| ..|.|++|+++|+|||+.+.|.+|.||..|.++ .+. . ++
T Consensus 89 ~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-Efe-----c----------~a-------- 144 (312)
T KOG0645|consen 89 KKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-EFE-----C----------IA-------- 144 (312)
T ss_pred ecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-cEE-----E----------Ee--------
Confidence 86655 578899988 789999999999999999999999888777433 111 0 00
Q ss_pred cccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEcc-CC--eE
Q 001109 188 QREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVS-ED--KV 264 (1155)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~-~~--~~ 264 (1155)
.+ ..|.+.|-. +.|||.. .+|++++.|++|++|.-. .+ .+
T Consensus 145 -VL-----------------------~~HtqDVK~-----V~WHPt~--------dlL~S~SYDnTIk~~~~~~dddW~c 187 (312)
T KOG0645|consen 145 -VL-----------------------QEHTQDVKH-----VIWHPTE--------DLLFSCSYDNTIKVYRDEDDDDWEC 187 (312)
T ss_pred -ee-----------------------ccccccccE-----EEEcCCc--------ceeEEeccCCeEEEEeecCCCCeeE
Confidence 00 012344444 9999975 469999999999999865 33 23
Q ss_pred EEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcC
Q 001109 265 VLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLR 333 (1155)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~ 333 (1155)
++... +|...|.+++|. ++|.+|++++.|++++||-..
T Consensus 188 ~~tl~------------------------------g~~~TVW~~~F~-~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 188 VQTLD------------------------------GHENTVWSLAFD-NIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred EEEec------------------------------CccceEEEEEec-CCCceEEEecCCcceEeeeec
Confidence 33321 146689999999 999999999999999999754
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.1e-23 Score=237.91 Aligned_cols=282 Identities=16% Similarity=0.228 Sum_probs=221.1
Q ss_pred CCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCcee
Q 001109 82 KQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKL 160 (1155)
Q Consensus 82 ~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l 160 (1155)
+...|+++.|.|...+++++-..|+|.|||.++...+..+... -+|+++.|.+.-+|+++|++|+.|+|++|.+.+.-.
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~ 91 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK 91 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeE
Confidence 5678999999999999999999999999999999999998854 789999999999999999999999999988743110
Q ss_pred eccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccc
Q 001109 161 IHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTL 240 (1155)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~ 240 (1155)
..+-| ..-+.+ ++.||..+.
T Consensus 92 ------------------~FeAH---------------------------------~DyIR~-----iavHPt~P~---- 111 (794)
T KOG0276|consen 92 ------------------TFEAH---------------------------------SDYIRS-----IAVHPTLPY---- 111 (794)
T ss_pred ------------------Eeecc---------------------------------ccceee-----eeecCCCCe----
Confidence 00111 222334 999998764
Q ss_pred cccEEEEEEcCCeEEEEEccCCe-EEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEE
Q 001109 241 GFSQLLLVYANGLIILWDVSEDK-VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLA 319 (1155)
Q Consensus 241 ~~~~llsg~~dG~I~lWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~la 319 (1155)
+++++.|-+|++||+..+- +.++ +++|+..|.+++|.+.|.+.+|
T Consensus 112 ----vLtsSDDm~iKlW~we~~wa~~qt------------------------------feGH~HyVMqv~fnPkD~ntFa 157 (794)
T KOG0276|consen 112 ----VLTSSDDMTIKLWDWENEWACEQT------------------------------FEGHEHYVMQVAFNPKDPNTFA 157 (794)
T ss_pred ----EEecCCccEEEEeeccCceeeeeE------------------------------EcCcceEEEEEEecCCCcccee
Confidence 9999999999999997543 3332 1236788999999977889999
Q ss_pred EEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEE
Q 001109 320 VGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTML 399 (1155)
Q Consensus 320 sg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl 399 (1155)
+++-|++|++|.+.+..+ .
T Consensus 158 S~sLDrTVKVWslgs~~~--------------------------n----------------------------------- 176 (794)
T KOG0276|consen 158 SASLDRTVKVWSLGSPHP--------------------------N----------------------------------- 176 (794)
T ss_pred eeeccccEEEEEcCCCCC--------------------------c-----------------------------------
Confidence 999999999998754210 0
Q ss_pred EccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCc
Q 001109 400 YLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPM 479 (1155)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~ 479 (1155)
.
T Consensus 177 -------------------------------------------------------------------------------f 177 (794)
T KOG0276|consen 177 -------------------------------------------------------------------------------F 177 (794)
T ss_pred -------------------------------------------------------------------------------e
Confidence 0
Q ss_pred ccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEEC
Q 001109 480 LIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYR 559 (1155)
Q Consensus 480 ~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~ 559 (1155)
++.+|+..|+|+.+++.+ +..+|+||+.
T Consensus 178 Tl~gHekGVN~Vdyy~~g----------------------------------------------------dkpylIsgaD 205 (794)
T KOG0276|consen 178 TLEGHEKGVNCVDYYTGG----------------------------------------------------DKPYLISGAD 205 (794)
T ss_pred eeeccccCcceEEeccCC----------------------------------------------------CcceEEecCC
Confidence 122367778888775321 2227999999
Q ss_pred CCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCce
Q 001109 560 DGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKE 639 (1155)
Q Consensus 560 DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~ 639 (1155)
|.+||+||.++.. ++.+|+ ||...|.++.|.|.-..+++|++||+||||+-.+-+..
T Consensus 206 D~tiKvWDyQtk~--CV~TLe---------GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE------------ 262 (794)
T KOG0276|consen 206 DLTIKVWDYQTKS--CVQTLE---------GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLE------------ 262 (794)
T ss_pred CceEEEeecchHH--HHHHhh---------cccccceEEEecCCCcEEEEecCCccEEEecCcceehh------------
Confidence 9999999998876 234443 89999999999999999999999999999997764322
Q ss_pred EEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 001109 640 VHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAM 685 (1155)
Q Consensus 640 ~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~l 685 (1155)
.++.-.-..|+||+-.+.++.+|+|++.|.|.|
T Consensus 263 -------------~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 263 -------------KTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred -------------hhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 122333467999999999999999999997643
No 38
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=2.1e-23 Score=230.58 Aligned_cols=283 Identities=23% Similarity=0.289 Sum_probs=208.5
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCce
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRI 117 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~ 117 (1155)
.||++.|++++|+|++++||+|+.||.|++|+..+....... .+...+..+.|++++.+|++++.|+.|++||+.+++.
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~ 85 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC 85 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc
Confidence 389999999999999999999999999999998765443332 4567888999999998999999999999999987633
Q ss_pred eeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccc
Q 001109 118 TSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFN 197 (1155)
Q Consensus 118 ~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ 197 (1155)
+..+..+
T Consensus 86 ~~~~~~~------------------------------------------------------------------------- 92 (289)
T cd00200 86 VRTLTGH------------------------------------------------------------------------- 92 (289)
T ss_pred eEEEecc-------------------------------------------------------------------------
Confidence 3222111
Q ss_pred cceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccccccc
Q 001109 198 ASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKT 277 (1155)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~ 277 (1155)
...+.+ +.|+|+ + +.+++++.+|.|.+||+.+++......
T Consensus 93 -------------------~~~i~~-----~~~~~~--~------~~~~~~~~~~~i~~~~~~~~~~~~~~~-------- 132 (289)
T cd00200 93 -------------------TSYVSS-----VAFSPD--G------RILSSSSRDKTIKVWDVETGKCLTTLR-------- 132 (289)
T ss_pred -------------------CCcEEE-----EEEcCC--C------CEEEEecCCCeEEEEECCCcEEEEEec--------
Confidence 011222 666665 2 356666668888888888766654311
Q ss_pred ccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccC
Q 001109 278 EIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSS 357 (1155)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~ 357 (1155)
.|...|++++|+ |++.++++++.||.|++||+.+.....
T Consensus 133 ----------------------~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~------------------ 171 (289)
T cd00200 133 ----------------------GHTDWVNSVAFS-PDGTFVASSSQDGTIKLWDLRTGKCVA------------------ 171 (289)
T ss_pred ----------------------cCCCcEEEEEEc-CcCCEEEEEcCCCcEEEEEccccccce------------------
Confidence 135679999999 899999999889999999986421100
Q ss_pred CCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCC
Q 001109 358 GNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNES 437 (1155)
Q Consensus 358 ~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~ 437 (1155)
.+
T Consensus 172 --------~~---------------------------------------------------------------------- 173 (289)
T cd00200 172 --------TL---------------------------------------------------------------------- 173 (289)
T ss_pred --------eE----------------------------------------------------------------------
Confidence 00
Q ss_pred CceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhcccc
Q 001109 438 HGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRA 517 (1155)
Q Consensus 438 ~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 517 (1155)
. .|...++++
T Consensus 174 -----------------~---------------------------~~~~~i~~~-------------------------- 183 (289)
T cd00200 174 -----------------T---------------------------GHTGEVNSV-------------------------- 183 (289)
T ss_pred -----------------e---------------------------cCccccceE--------------------------
Confidence 0 011111222
Q ss_pred CCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEE
Q 001109 518 SHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSA 597 (1155)
Q Consensus 518 ~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~ 597 (1155)
.++|+++.+++++.||.|++||+..+.. +..+ ..|..+|.+
T Consensus 184 ----------------------------~~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~---------~~~~~~i~~ 224 (289)
T cd00200 184 ----------------------------AFSPDGEKLLSSSSDGTIKLWDLSTGKC--LGTL---------RGHENGVNS 224 (289)
T ss_pred ----------------------------EECCCcCEEEEecCCCcEEEEECCCCce--ecch---------hhcCCceEE
Confidence 3345556788888899999999987652 1222 156669999
Q ss_pred EEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEE
Q 001109 598 LEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVG 677 (1155)
Q Consensus 598 lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsG 677 (1155)
++|+|++.++++++.||.|++|++..... ...+..|...|++++|+|++++|+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 225 VAFSPDGYLLASGSEDGTIRVWDLRTGEC-------------------------VQTLSGHTNSVTSLAWSPDGKRLASG 279 (289)
T ss_pred EEEcCCCcEEEEEcCCCcEEEEEcCCcee-------------------------EEEccccCCcEEEEEECCCCCEEEEe
Confidence 99999999999888899999999976321 23456788999999999999999999
Q ss_pred eCCCcEEEEe
Q 001109 678 FECSQVAMLD 687 (1155)
Q Consensus 678 s~Dg~V~lWD 687 (1155)
+.||.|++||
T Consensus 280 ~~d~~i~iw~ 289 (289)
T cd00200 280 SADGTIRIWD 289 (289)
T ss_pred cCCCeEEecC
Confidence 9999999996
No 39
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=2.5e-25 Score=241.21 Aligned_cols=281 Identities=15% Similarity=0.169 Sum_probs=209.3
Q ss_pred eeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccC
Q 001109 224 FVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEK 303 (1155)
Q Consensus 224 ~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1155)
.|..|.|.|+ | ++|++|+..|.+.||+..+-.. +.-++ .|+.
T Consensus 98 ~V~~v~WtPe--G------RRLltgs~SGEFtLWNg~~fnF-------EtilQ-----------------------aHDs 139 (464)
T KOG0284|consen 98 PVNVVRWTPE--G------RRLLTGSQSGEFTLWNGTSFNF-------ETILQ-----------------------AHDS 139 (464)
T ss_pred ceeeEEEcCC--C------ceeEeecccccEEEecCceeeH-------HHHhh-----------------------hhcc
Confidence 5556999998 4 7899999999999999732111 00011 2689
Q ss_pred CccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEE
Q 001109 304 EISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLF 383 (1155)
Q Consensus 304 ~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~ll 383 (1155)
.|+++.|+ ++|.++++|..+|.|++|+..-... |+ ....|.+.|+.++|+
T Consensus 140 ~Vr~m~ws-~~g~wmiSgD~gG~iKyWqpnmnnV--------------k~--~~ahh~eaIRdlafS------------- 189 (464)
T KOG0284|consen 140 PVRTMKWS-HNGTWMISGDKGGMIKYWQPNMNNV--------------KI--IQAHHAEAIRDLAFS------------- 189 (464)
T ss_pred cceeEEEc-cCCCEEEEcCCCceEEecccchhhh--------------HH--hhHhhhhhhheeccC-------------
Confidence 99999999 9999999999999999998754321 11 112233444444443
Q ss_pred EecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcc
Q 001109 384 VFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKK 463 (1155)
Q Consensus 384 v~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l 463 (1155)
|.+ ..++.++.+|.|++||-....
T Consensus 190 -----------------------------------------------pnD------skF~t~SdDg~ikiWdf~~~k--- 213 (464)
T KOG0284|consen 190 -----------------------------------------------PND------SKFLTCSDDGTIKIWDFRMPK--- 213 (464)
T ss_pred -----------------------------------------------CCC------ceeEEecCCCeEEEEeccCCc---
Confidence 222 255667778899999953100
Q ss_pred cccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCccc
Q 001109 464 SQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLH 543 (1155)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~ 543 (1155)
.... +.|+.+.+.+
T Consensus 214 -------------ee~v-----------------------------------------------------L~GHgwdVks 227 (464)
T KOG0284|consen 214 -------------EERV-----------------------------------------------------LRGHGWDVKS 227 (464)
T ss_pred -------------hhhe-----------------------------------------------------eccCCCCcce
Confidence 0011 2233333334
Q ss_pred ccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEecc
Q 001109 544 DAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIK 623 (1155)
Q Consensus 544 l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~ 623 (1155)
+ +++|...++++||.|..|++||..++. +++++. +|...|.++.|.|++.+|++++.|..+++||+..
T Consensus 228 v-dWHP~kgLiasgskDnlVKlWDprSg~--cl~tlh---------~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 228 V-DWHPTKGLIASGSKDNLVKLWDPRSGS--CLATLH---------GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred e-ccCCccceeEEccCCceeEeecCCCcc--hhhhhh---------hccceEEEEEEcCCCCeeEEccCCceEEEEehhH
Confidence 4 778888899999999999999999887 344443 7888999999999999999999999999999985
Q ss_pred CccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEecCCccEEEEeccCCC
Q 001109 624 SSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFG-ARLAVGFECSQVAMLDISTFSVLFITDSLSN 702 (1155)
Q Consensus 624 ~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg-~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~ 702 (1155)
-+. +.++.+|...|++++|+|-. .+|++|+.||.|..|.+.....+-.. -.+
T Consensus 296 mkE-------------------------l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i--~~A 348 (464)
T KOG0284|consen 296 MKE-------------------------LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI--PPA 348 (464)
T ss_pred hHH-------------------------HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC--Ccc
Confidence 322 14568999999999999954 58999999999999998743333222 246
Q ss_pred CCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC
Q 001109 703 SNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 703 h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
|...|++|+|. |-|.+|++|+.|.++++|.-
T Consensus 349 Hd~~iwsl~~h----------------------PlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 349 HDGEIWSLAYH----------------------PLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cccceeeeecc----------------------ccceeEeecCCCcceeeecc
Confidence 99999999999 78999999999999999974
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.3e-23 Score=232.57 Aligned_cols=202 Identities=10% Similarity=0.187 Sum_probs=167.7
Q ss_pred CCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcC-CCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceee
Q 001109 41 IPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSP-KQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITS 119 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~-~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~ 119 (1155)
+...|.++.|+|.--++.++--+|+|.||+.++...+..+. ...||++..|.+-..++++|++|..|+|+|..|++.+.
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~ 91 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK 91 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeE
Confidence 56789999999999999999999999999988776654442 36799999999999999999999999999999999999
Q ss_pred eecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccccc
Q 001109 120 TLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNA 198 (1155)
Q Consensus 120 ~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~ 198 (1155)
++..| ..|+|++++|...+++++++|-+|++|+|+..-.... .| .|
T Consensus 92 ~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q--tf-------------------------eG------ 138 (794)
T KOG0276|consen 92 TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ--TF-------------------------EG------ 138 (794)
T ss_pred EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee--EE-------------------------cC------
Confidence 99987 7899999999999999999999999999987421100 00 01
Q ss_pred ceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccc
Q 001109 199 SLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTE 278 (1155)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~ 278 (1155)
|.. +|-+++|+|.+. +.+++++-|++|++|.+....+..+. +
T Consensus 139 -----------------H~H-----yVMqv~fnPkD~-------ntFaS~sLDrTVKVWslgs~~~nfTl-------~-- 180 (794)
T KOG0276|consen 139 -----------------HEH-----YVMQVAFNPKDP-------NTFASASLDRTVKVWSLGSPHPNFTL-------E-- 180 (794)
T ss_pred -----------------cce-----EEEEEEecCCCc-------cceeeeeccccEEEEEcCCCCCceee-------e--
Confidence 122 444599999876 68999999999999999776665541 1
Q ss_pred cccCCCCCCCCCCcccccccccccCCccEEEEEecC--CCeEEEEEcCCcEEEEEcCCC
Q 001109 279 IVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASND--GSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pd--G~~lasg~~DG~I~lWd~~s~ 335 (1155)
+|++.|.|++|- +- -.+|+||+.|-+|++||..+.
T Consensus 181 ---------------------gHekGVN~Vdyy-~~gdkpylIsgaDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 181 ---------------------GHEKGVNCVDYY-TGGDKPYLISGADDLTIKVWDYQTK 217 (794)
T ss_pred ---------------------ccccCcceEEec-cCCCcceEEecCCCceEEEeecchH
Confidence 268899999997 43 369999999999999998764
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.93 E-value=9.5e-24 Score=221.55 Aligned_cols=202 Identities=15% Similarity=0.172 Sum_probs=161.4
Q ss_pred eccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCce--EEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCC
Q 001109 37 LHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIE--GLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA 114 (1155)
Q Consensus 37 ~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~--~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t 114 (1155)
...||++.|+.+.|+|+|.+||+|+.|..|.+|+..+.+ .-....|.++|..|.|.+|+..|++++.|.+|+.||+++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 347999999999999999999999999999999865432 112225789999999999999999999999999999999
Q ss_pred CceeeeecCC-CceeEEEEecCCC-EEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccc
Q 001109 115 RRITSTLPWE-SNITAFSVIFGTS-YMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKG 192 (1155)
Q Consensus 115 ~~~~~~l~~~-~~Vtsva~spd~~-~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~ 192 (1155)
|++++.++.| +-|+++....-|. .+.+|+.||+++||+.-... .+ .. .
T Consensus 122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~--~~------~t--~-------------------- 171 (338)
T KOG0265|consen 122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE--AI------KT--F-------------------- 171 (338)
T ss_pred ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc--hh------hc--c--------------------
Confidence 9999999988 5677777544444 56789999999999543321 11 00 0
Q ss_pred ccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccc
Q 001109 193 KAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKD 272 (1155)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~ 272 (1155)
... ..++++.|...+ +.+.+|+-|+.|++||++.+..+.+..
T Consensus 172 ----------------------~~k-----yqltAv~f~d~s--------~qv~sggIdn~ikvWd~r~~d~~~~ls--- 213 (338)
T KOG0265|consen 172 ----------------------ENK-----YQLTAVGFKDTS--------DQVISGGIDNDIKVWDLRKNDGLYTLS--- 213 (338)
T ss_pred ----------------------ccc-----eeEEEEEecccc--------cceeeccccCceeeeccccCcceEEee---
Confidence 001 134448887653 579999999999999999888776522
Q ss_pred cccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 273 LQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
+|...|+.+..+ ++|.++.+-+.|.++++||++.
T Consensus 214 ---------------------------Gh~DtIt~lsls-~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 214 ---------------------------GHADTITGLSLS-RYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred ---------------------------cccCceeeEEec-cCCCccccccccceEEEEEecc
Confidence 157889999999 9999999999999999999864
No 42
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=7.2e-23 Score=233.41 Aligned_cols=572 Identities=13% Similarity=0.131 Sum_probs=331.7
Q ss_pred CceEEEEcCCCCEEEEEEcCCeEEEEccCCceEE-EEcCCCCCEEEEEEEcCCcEEEEEe--cCCeEEEEECCCCceeee
Q 001109 44 TASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGL-LVSPKQLAFKHLEFLQNQGFLVSIS--SGNEIQLWDLEARRITST 120 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~-~~~~~~~~V~~l~Fs~dg~~LvS~s--~Dg~I~vWDl~t~~~~~~ 120 (1155)
....||.+|-..++|.- ....|.||+.+....- +.-.++.++++|+|+++|+|+++|- ....++||+++....+..
T Consensus 39 ~~~gLa~~p~Sgl~aYp-AGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAE 117 (1080)
T KOG1408|consen 39 NANGLASVPCSGLCAYP-AGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAE 117 (1080)
T ss_pred cCCcccccccccceeec-cCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhh
Confidence 35668899988887763 3357888988653221 2223567999999999999999985 445699999999988888
Q ss_pred ecCC-CceeEEEEecCCCEEEEEeCC--CcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccc
Q 001109 121 LPWE-SNITAFSVIFGTSYMYIGDEY--GMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFN 197 (1155)
Q Consensus 121 l~~~-~~Vtsva~spd~~~l~~G~~d--G~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ 197 (1155)
|..| -.|+|++|+|.++|+++-+.. --|.||+|-... . +
T Consensus 118 fvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~---~------------------------------~----- 159 (1080)
T KOG1408|consen 118 FVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNS---S------------------------------G----- 159 (1080)
T ss_pred hhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcc---c------------------------------c-----
Confidence 8877 689999999999999864433 235566554311 0 0
Q ss_pred cceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEE----E--eccc
Q 001109 198 ASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVL----V--RGSK 271 (1155)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~----~--~~~~ 271 (1155)
+ ...|-+ .|.+++|+-+. .++++++ +..|++|.+..++... . |.++
T Consensus 160 -----------a-------snkiss-~Vsav~fsEdg--------SYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~ 211 (1080)
T KOG1408|consen 160 -----------A-------SNKISS-VVSAVAFSEDG--------SYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYF 211 (1080)
T ss_pred -----------c-------ccccce-eEEEEEEccCC--------ceeeeee-eeeEEEEEeeccccccCCccccchhhh
Confidence 0 011111 45568888774 4566654 5689999998776211 0 1110
Q ss_pred ccccccc-cccCC------------CCCCCCCCc--cc---ccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcC
Q 001109 272 DLQLKTE-IVDDP------------SKNAGHNLS--ET---VSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLR 333 (1155)
Q Consensus 272 ~~~~~~~-~~~~~------------~~~~~~~~~--~~---~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~ 333 (1155)
-..+... ..+-+ ....||.+. .. +.+.+-....-.|+|.+ .++|++|..+|.|++++..
T Consensus 212 lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs---~r~I~cgCa~g~vrlFnp~ 288 (1080)
T KOG1408|consen 212 LGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS---SRLIACGCAKGMVRLFNPE 288 (1080)
T ss_pred ccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee---cceEEEeeccceeeecCcc
Confidence 0000000 00000 001222110 00 00000012223456654 7899999999999999988
Q ss_pred CCCCccccccCC--CCCCc------ccccccCCCCCcc-EEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCC
Q 001109 334 AAASTKDWKSEN--SSTDF------GKLQLSSGNRRLP-VITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWS 404 (1155)
Q Consensus 334 s~~~~~~~~~~~--~~~~i------~kl~l~~~~~~~p-I~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~ 404 (1155)
+...... .+.. ...++ ..+........-| -+.+.|.. ....+-+...+ +.+.+|+++..
T Consensus 289 tL~y~~T-lpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fde------t~~klscVYnd-----hSlYvWDvrD~ 356 (1080)
T KOG1408|consen 289 TLDYAGT-LPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDE------TTDKLSCVYND-----HSLYVWDVRDV 356 (1080)
T ss_pred hhhhccc-cccccccccchhhcccccccccccCcccCCceeEEEecC------CCceEEEEEcC-----ceEEEEecccc
Confidence 7653222 1100 00000 0000000011111 12333322 23344444333 78999887654
Q ss_pred cccccceeceeeeecCCCceeEEEEecCCC-----CCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCc
Q 001109 405 SRIESLKCIGRVDLERKGSFVDMVLLPNGM-----NESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPM 479 (1155)
Q Consensus 405 ~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~-----~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~ 479 (1155)
.+.. +| ...+.|..-++++..+|..- ..-....++..++||+|++||+....- ...+..
T Consensus 357 ~kvg--k~--~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctn------------n~vyrR 420 (1080)
T KOG1408|consen 357 NKVG--KC--SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTN------------NQVYRR 420 (1080)
T ss_pred cccc--ce--eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccc------------cceeec
Confidence 4322 12 23466677778887777322 222345688899999999999764211 000000
Q ss_pred ccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEEC
Q 001109 480 LIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYR 559 (1155)
Q Consensus 480 ~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~ 559 (1155)
.+ -......+. +.++...++ .+.. .+ . +-...-..-++..+..++ +++|+++.||+|..
T Consensus 421 Ni--ls~~l~ki~-y~d~~~q~~-----------~d~~--~~---~-fdka~~s~~d~r~G~R~~-~vSp~gqhLAsGDr 479 (1080)
T KOG1408|consen 421 NI--LSANLSKIP-YEDSTQQIM-----------HDAS--AG---I-FDKALVSTCDSRFGFRAL-AVSPDGQHLASGDR 479 (1080)
T ss_pred cc--chhhhhcCc-cccCchhhh-----------hhcc--CC---c-ccccchhhcCcccceEEE-EECCCcceecccCc
Confidence 00 000000000 011111110 0000 00 0 000011122334445566 89999999999999
Q ss_pred CCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEec---CCCeEEEEeCCCeEEEEEeccCcc-----cc---
Q 001109 560 DGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCS---VTLNLAIGSSSGLVWLYNLIKSSN-----EE--- 628 (1155)
Q Consensus 560 DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafsp---dg~~Lasgs~dG~V~lwd~~~~~~-----~~--- 628 (1155)
-|++|++|+....+ ++.+ ..|...|.||.||- ..++||+|+.|..|.|||...+-. ++
T Consensus 480 ~GnlrVy~Lq~l~~--~~~~---------eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSs 548 (1080)
T KOG1408|consen 480 GGNLRVYDLQELEY--TCFM---------EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSS 548 (1080)
T ss_pred cCceEEEEehhhhh--hhhe---------ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccc
Confidence 99999999976552 2222 27888999999985 357899999999999999987521 11
Q ss_pred ---ceeeeccCCceEEEecCCCC----Cce------eEEeecC-----CCCeEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 001109 629 ---TLNLVTETGKEVHILPGGDG----PQC------KALFSVL-----NSPICNLKFSNFGARLAVGFECSQVAMLDIST 690 (1155)
Q Consensus 629 ---~~~~v~~~~~~~~~~~~~~g----~~~------~~~l~~h-----~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~ 690 (1155)
.+.|.-+ +.....+.+|.. |.. ...|..| ...+..++..|..++++++..|..|+|+|+++
T Consensus 549 sITsvKFa~~-gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s 627 (1080)
T KOG1408|consen 549 SITSVKFACN-GLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES 627 (1080)
T ss_pred ceeEEEEeec-CCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccc
Confidence 1122211 111222222210 000 0112222 34688999999999999999999999999999
Q ss_pred ccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeeccc
Q 001109 691 FSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSIHH 768 (1155)
Q Consensus 691 ~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~~ 768 (1155)
++....+..-.+|.+....+... |.|.+|++...|.++.++|-.+|+|+..-+.|.
T Consensus 628 gKq~k~FKgs~~~eG~lIKv~lD----------------------PSgiY~atScsdktl~~~Df~sgEcvA~m~GHs 683 (1080)
T KOG1408|consen 628 GKQVKSFKGSRDHEGDLIKVILD----------------------PSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS 683 (1080)
T ss_pred cceeeeecccccCCCceEEEEEC----------------------CCccEEEEeecCCceEEEEeccchhhhhhcCcc
Confidence 99887655444677777777776 788999999999999999999999987665554
No 43
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.5e-21 Score=221.00 Aligned_cols=520 Identities=17% Similarity=0.147 Sum_probs=305.1
Q ss_pred eeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCc---eEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEEC
Q 001109 36 TLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNI---EGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDL 112 (1155)
Q Consensus 36 ~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~---~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl 112 (1155)
.|-.=-|++|.+|||+.+.+.||++-.||.|-+|+.... +.++..+....|.+|+|+++ ++|+|.+.+|.|.-||+
T Consensus 19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDL 97 (691)
T ss_pred EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEec
Confidence 333345789999999999999999999999999998653 33333455678999999954 78999999999999999
Q ss_pred CCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccc
Q 001109 113 EARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREK 191 (1155)
Q Consensus 113 ~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~ 191 (1155)
.+.+..+.+... +.|.+++.+|.+..+++|++||.++ .++...+.+. |...-
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~--~~s~~p~~I~---~~r~l---------------------- 150 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLY--DFSIGPDKIT---YKRSL---------------------- 150 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEE--EEecCCceEE---EEeec----------------------
Confidence 999998888754 8999999999999999999999553 4454443332 11000
Q ss_pred cccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccc
Q 001109 192 GKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSK 271 (1155)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~ 271 (1155)
. +..+++.+ +.|+|++ .+|++|+.||.|++||+..+..+....
T Consensus 151 ~----------------------rq~sRvLs-----lsw~~~~--------~~i~~Gs~Dg~Iriwd~~~~~t~~~~~-- 193 (691)
T KOG2048|consen 151 M----------------------RQKSRVLS-----LSWNPTG--------TKIAGGSIDGVIRIWDVKSGQTLHIIT-- 193 (691)
T ss_pred c----------------------cccceEEE-----EEecCCc--------cEEEecccCceEEEEEcCCCceEEEee--
Confidence 0 01356667 9999984 469999999999999999998776311
Q ss_pred ccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcc
Q 001109 272 DLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFG 351 (1155)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~ 351 (1155)
.++.... ..+..-|.++.|- .|+ .||+|..-|+|.+||...+...+.
T Consensus 194 -----~~~d~l~---------------k~~~~iVWSv~~L-rd~-tI~sgDS~G~V~FWd~~~gTLiqS----------- 240 (691)
T KOG2048|consen 194 -----MQLDRLS---------------KREPTIVWSVLFL-RDS-TIASGDSAGTVTFWDSIFGTLIQS----------- 240 (691)
T ss_pred -----ecccccc---------------cCCceEEEEEEEe-ecC-cEEEecCCceEEEEcccCcchhhh-----------
Confidence 1111000 0023457888887 555 599999999999999988754332
Q ss_pred cccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEec
Q 001109 352 KLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLP 431 (1155)
Q Consensus 352 kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~ 431 (1155)
..-|..-|..|+-. ....+++++|-+. +.+ -+.+..... + ....... ..+...+..|+.++
T Consensus 241 -----~~~h~adVl~Lav~------~~~d~vfsaGvd~----~ii-~~~~~~~~~-~-wv~~~~r-~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 241 -----HSCHDADVLALAVA------DNEDRVFSAGVDP----KII-QYSLTTNKS-E-WVINSRR-DLHAHDVRSMAVIE 301 (691)
T ss_pred -----hhhhhcceeEEEEc------CCCCeEEEccCCC----ceE-EEEecCCcc-c-eeeeccc-cCCcccceeeeeec
Confidence 22344556666432 3445666666552 222 222211100 0 0000000 11112233333332
Q ss_pred CCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchh------HH
Q 001109 432 NGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLS------VE 505 (1155)
Q Consensus 432 ~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s------~~ 505 (1155)
. .++..+.+..|++-....+.. . ....+-..+ +.+.+.+. ....++. ..
T Consensus 302 ~--------~l~sgG~d~~l~i~~s~~~~~------~-----~h~~~~~~p-~~~~v~~a-----~~~~L~~~w~~h~v~ 356 (691)
T KOG2048|consen 302 N--------ALISGGRDFTLAICSSREFKN------M-----DHRQKNLFP-ASDRVSVA-----PENRLLVLWKAHGVD 356 (691)
T ss_pred c--------eEEecceeeEEEEccccccCc------h-----hhhcccccc-ccceeecC-----ccceEEEEecccccc
Confidence 1 333444444444322211000 0 000000000 11101000 0110100 01
Q ss_pred HHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCc
Q 001109 506 LSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPG 585 (1155)
Q Consensus 506 ~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~ 585 (1155)
+|.+-+....+. .+ .+.+ -+-.+.+. ... ..++.+|+|++++-+. =..++++.+....+..+..++ .
T Consensus 357 lwrlGS~~~~g~--~~-~~~L---lkl~~k~~-~nI-s~~aiSPdg~~Ia~st-~~~~~iy~L~~~~~vk~~~v~----~ 423 (691)
T KOG2048|consen 357 LWRLGSVILQGE--YN-YIHL---LKLFTKEK-ENI-SCAAISPDGNLIAIST-VSRTKIYRLQPDPNVKVINVD----D 423 (691)
T ss_pred ceeccCcccccc--cC-hhhh---eeeecCCc-cce-eeeccCCCCCEEEEee-ccceEEEEeccCcceeEEEec----c
Confidence 111100000000 00 0000 00001111 111 2238899999998776 345788877653321111111 1
Q ss_pred cccCCCCCCeEEEEEecCCCeEEEEe-CCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEE
Q 001109 586 IRTATESESVSALEFCSVTLNLAIGS-SSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICN 664 (1155)
Q Consensus 586 i~~~gh~~~V~~lafspdg~~Lasgs-~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vts 664 (1155)
+ .....++..+.|+-|+..++..+ .+..+.++++.+.... ++..++. ..--..|+.
T Consensus 424 ~--~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~k-----------el~~~~~----------~~~~~~I~~ 480 (691)
T KOG2048|consen 424 V--PLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFK-----------ELKSIQS----------QAKCPSISR 480 (691)
T ss_pred c--hhhhccceeeEEEecCceEEEEecccceeEEEEecCcchh-----------hhhcccc----------ccCCCccee
Confidence 1 01223678999999988887777 6678888887765321 0100000 123457999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEE
Q 001109 665 LKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFM 744 (1155)
Q Consensus 665 lafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~ 744 (1155)
|+.||+|++||+.+.+|.|.+|++.+.+.-.. .......|+..+|.+ ++-+.|+.+
T Consensus 481 l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l---~~rln~~vTa~~~~~---------------------~~~~~lvva 536 (691)
T KOG2048|consen 481 LVVSSDGNYIAAISTRGQIFVYNLETLESHLL---KVRLNIDVTAAAFSP---------------------FVRNRLVVA 536 (691)
T ss_pred EEEcCCCCEEEEEeccceEEEEEcccceeecc---hhccCcceeeeeccc---------------------cccCcEEEE
Confidence 99999999999999999999999998654322 223557899999984 456679999
Q ss_pred eCCceEEEEECCC
Q 001109 745 TKDAHIVVCDSTT 757 (1155)
Q Consensus 745 s~Dg~I~vwd~~t 757 (1155)
+.|+.+.-+|.+.
T Consensus 537 ts~nQv~efdi~~ 549 (691)
T KOG2048|consen 537 TSNNQVFEFDIEA 549 (691)
T ss_pred ecCCeEEEEecch
Confidence 9999999999854
No 44
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=1.3e-22 Score=232.48 Aligned_cols=550 Identities=15% Similarity=0.102 Sum_probs=330.2
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEccCCceEEEE-cCCCCCEEEEEEEcCCc---EEEEEecCCeEEEEECCCCc--eeeee
Q 001109 48 LAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLV-SPKQLAFKHLEFLQNQG---FLVSISSGNEIQLWDLEARR--ITSTL 121 (1155)
Q Consensus 48 lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~-~~~~~~V~~l~Fs~dg~---~LvS~s~Dg~I~vWDl~t~~--~~~~l 121 (1155)
.++.| +.++|.|.. ..|-+||......... -.|.++|.++.|.|... ++++|+.|++|++|.++... ++.++
T Consensus 20 ~sw~~-~~~vafGa~-~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~ 97 (764)
T KOG1063|consen 20 SSWGP-GGLVAFGAG-PAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTI 97 (764)
T ss_pred ccccc-cceEEecCC-ceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEee
Confidence 44544 447787765 5799999876644333 36789999999999876 79999999999999998543 45566
Q ss_pred cCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceee-ccceeccCCceeeeceeEeeEecccccccccccccccce
Q 001109 122 PWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLI-HSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASL 200 (1155)
Q Consensus 122 ~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~-~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 200 (1155)
+++ .+.++++......+.....+|++++|+...++ +. ....++.
T Consensus 98 ~g~-~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e--~~~~~~~rf~-------------------------------- 142 (764)
T KOG1063|consen 98 QGH-CKECVCVVARSSVMTCKAADGTVSVWDKQQDE--VFLLAVLRFE-------------------------------- 142 (764)
T ss_pred cCc-ceeEEEEEeeeeEEEeeccCceEEEeecCCCc--eeeehheehh--------------------------------
Confidence 663 45666665555555545789999999763322 11 0000000
Q ss_pred eeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccc
Q 001109 201 LFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIV 280 (1155)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~ 280 (1155)
...++. .++++.|+... -.++.|+.+..|.++.-..++...... +
T Consensus 143 ----------------~k~~ip---LcL~~~~~~~~------~lla~Ggs~~~v~~~s~~~d~f~~v~e-----l----- 187 (764)
T KOG1063|consen 143 ----------------IKEAIP---LCLAALKNNKT------FLLACGGSKFVVDLYSSSADSFARVAE-----L----- 187 (764)
T ss_pred ----------------hhhHhh---HHHhhhccCCc------EEEEecCcceEEEEeccCCcceeEEEE-----e-----
Confidence 000000 01444453221 245666677777777655554433211 1
Q ss_pred cCCCCCCCCCCcccccccccccCCccEEEEEecCCC---eEEEEEcCCcEEEEEcCCCCCcccccc-----CCCCCCc--
Q 001109 281 DDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGS---VLAVGYVDGDILLWNLRAAASTKDWKS-----ENSSTDF-- 350 (1155)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~---~lasg~~DG~I~lWd~~s~~~~~~~~~-----~~~~~~i-- 350 (1155)
++|...|.+++|+ .-+. +||+++.|..||||.+.-......+.. ...+.+.
T Consensus 188 ------------------~GH~DWIrsl~f~-~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~ 248 (764)
T KOG1063|consen 188 ------------------EGHTDWIRSLAFA-RLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFM 248 (764)
T ss_pred ------------------eccchhhhhhhhh-ccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceee
Confidence 1368999999998 5444 899999999999998765431110000 0011111
Q ss_pred --cccccc------CCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeee-e-cC
Q 001109 351 --GKLQLS------SGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVD-L-ER 420 (1155)
Q Consensus 351 --~kl~l~------~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~-l-~~ 420 (1155)
..+++. --+|...|.++.|.+ .+-.|+.+..+ +.+-+|.-+..++++. +..++. + +.
T Consensus 249 ~l~~i~~~is~eall~GHeDWV~sv~W~p------~~~~LLSASaD-----ksmiiW~pd~~tGiWv--~~vRlGe~gg~ 315 (764)
T KOG1063|consen 249 ILEEIQYRISFEALLMGHEDWVYSVWWHP------EGLDLLSASAD-----KSMIIWKPDENTGIWV--DVVRLGEVGGS 315 (764)
T ss_pred eeeeEEEEEehhhhhcCcccceEEEEEcc------chhhheecccC-----cceEEEecCCccceEE--EEEEeeccccc
Confidence 011111 136889999999986 23344444433 5666665554433321 111211 1 12
Q ss_pred CCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCC
Q 001109 421 KGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDG 500 (1155)
Q Consensus 421 ~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~ 500 (1155)
.+.+.+..+.|++ ..++.-+..|-+++|....-. .......+++|...|+.++..+.+.-
T Consensus 316 a~GF~g~lw~~n~------~~ii~~g~~Gg~hlWkt~d~~-------------~w~~~~~iSGH~~~V~dv~W~psGef- 375 (764)
T KOG1063|consen 316 AGGFWGGLWSPNS------NVIIAHGRTGGFHLWKTKDKT-------------FWTQEPVISGHVDGVKDVDWDPSGEF- 375 (764)
T ss_pred ccceeeEEEcCCC------CEEEEecccCcEEEEeccCcc-------------ceeeccccccccccceeeeecCCCCE-
Confidence 2345566665544 366777778889999832111 11223467889999999988765442
Q ss_pred chhHHHHHHHHhhccccCCCCCccccCCCccCc------ccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCee
Q 001109 501 KLSVELSKTLSAAKVRASHTPSTQLTGSTTKWP------LTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLS 574 (1155)
Q Consensus 501 ~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~------l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~ 574 (1155)
+++...+..... . .+ .+....|. +.|.. ..++ ++-+..-.+++|...+.+|++++......
T Consensus 376 lLsvs~DQTTRl---F---a~----wg~q~~wHEiaRPQiHGyD--l~c~-~~vn~~~~FVSgAdEKVlRvF~aPk~fv~ 442 (764)
T KOG1063|consen 376 LLSVSLDQTTRL---F---AR----WGRQQEWHEIARPQIHGYD--LTCL-SFVNEDLQFVSGADEKVLRVFEAPKSFVK 442 (764)
T ss_pred EEEeccccceee---e---cc----cccccceeeeccccccccc--ceee-ehccCCceeeecccceeeeeecCcHHHHH
Confidence 232222211000 0 00 01112231 12221 1223 45454567899999999999986421100
Q ss_pred ----------------------eeeeeCC-CcC-------------------------------c-----------cccC
Q 001109 575 ----------------------LIHVFGS-ELP-------------------------------G-----------IRTA 589 (1155)
Q Consensus 575 ----------------------~l~~l~~-~~~-------------------------------~-----------i~~~ 589 (1155)
+...+.. .+. + .++.
T Consensus 443 ~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY 522 (764)
T KOG1063|consen 443 SLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY 522 (764)
T ss_pred HHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc
Confidence 0000000 000 0 0134
Q ss_pred CCCCCeEEEEEecCCCeEEEEeCCC-----eEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEE
Q 001109 590 TESESVSALEFCSVTLNLAIGSSSG-----LVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICN 664 (1155)
Q Consensus 590 gh~~~V~~lafspdg~~Lasgs~dG-----~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vts 664 (1155)
||...|.+++.+|+|.++|++.... .|+||+....... ..+.+|+-.||.
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~-------------------------~~L~~HsLTVT~ 577 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV-------------------------QELEGHSLTVTR 577 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh-------------------------heecccceEEEE
Confidence 9999999999999999999988653 5788987664321 346789999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCccEE-EEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEE
Q 001109 665 LKFSNFGARLAVGFECSQVAMLDISTFSVL-FITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFF 743 (1155)
Q Consensus 665 lafSpdg~~LAsGs~Dg~V~lWDi~~~~~l-~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s 743 (1155)
|+|||||++|++.+.|.++.||........ +.+.+...|+.-|+++.|+ ||+..+++
T Consensus 578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~----------------------pde~~FaT 635 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWS----------------------PDEKYFAT 635 (764)
T ss_pred EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccC----------------------cccceeEE
Confidence 999999999999999999999998553222 1223456799999999999 88999999
Q ss_pred EeCCceEEEEECCCC--ceeeeeeccc--CCCceEEEEEEeC
Q 001109 744 MTKDAHIVVCDSTTG--HILFSRSIHH--QESNAIYMCIIEG 781 (1155)
Q Consensus 744 ~s~Dg~I~vwd~~tG--~~l~~~~~~~--~~~~al~~~~ld~ 781 (1155)
+|.|.+|+||....+ +.+.....-+ ..-.|++....+.
T Consensus 636 aSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~ 677 (764)
T KOG1063|consen 636 ASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDH 677 (764)
T ss_pred ecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccc
Confidence 999999999998877 5554431111 1444555544443
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.92 E-value=7.3e-25 Score=242.58 Aligned_cols=171 Identities=18% Similarity=0.237 Sum_probs=140.6
Q ss_pred CCCCcceeec--cCCCCCceEEEEcC-CCCEEEEEEcCCeEEEEccCC-ceEEEEc-CCCCCEEEEEEEcCCcEEEEEec
Q 001109 29 KDFDPRVTLH--YGIPSTASILAFDH-VQSLLAIGTQDGRIKVIGGDN-IEGLLVS-PKQLAFKHLEFLQNQGFLVSISS 103 (1155)
Q Consensus 29 ~~~~~~~~~~--~G~~~~vs~lafsp-~g~lLAsgs~DG~I~vw~~~~-~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~ 103 (1155)
.++-|+...+ .||+..|+++.|.| .+.||++|+.|+.|+||+.-. ..++.++ .|..+|+.+.|+++|..++|++.
T Consensus 199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec
Confidence 3445666655 69999999999999 899999999999999999755 5566554 57889999999999999999999
Q ss_pred CCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEe
Q 001109 104 GNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFC 183 (1155)
Q Consensus 104 Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~ 183 (1155)
|+.|++||++||+++..+.....+
T Consensus 279 D~~lKlwDtETG~~~~~f~~~~~~-------------------------------------------------------- 302 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFHLDKVP-------------------------------------------------------- 302 (503)
T ss_pred ceeeeeeccccceEEEEEecCCCc--------------------------------------------------------
Confidence 999999999999887544321111
Q ss_pred cccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCe
Q 001109 184 PNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDK 263 (1155)
Q Consensus 184 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~ 263 (1155)
+++.|+|++. +.+++|+.|+.|+.||+++++
T Consensus 303 ------------------------------------------~cvkf~pd~~-------n~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 303 ------------------------------------------TCVKFHPDNQ-------NIFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred ------------------------------------------eeeecCCCCC-------cEEEEecCCCcEEEEeccchH
Confidence 1266777653 678999999999999999999
Q ss_pred EEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 264 VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
+++.. ..|-+.|..+.|. ++|+++++.+.|++++||+...+
T Consensus 334 vvqeY------------------------------d~hLg~i~~i~F~-~~g~rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 334 VVQEY------------------------------DRHLGAILDITFV-DEGRRFISSSDDKSVRIWENRIP 374 (503)
T ss_pred HHHHH------------------------------HhhhhheeeeEEc-cCCceEeeeccCccEEEEEcCCC
Confidence 76531 1257889999999 99999999999999999998654
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=1.6e-23 Score=251.18 Aligned_cols=201 Identities=20% Similarity=0.307 Sum_probs=163.6
Q ss_pred CCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCce--EEEE-cCCCCCEEEEEEEcCCcEEEEEecCCeEEEEEC-CCCc
Q 001109 41 IPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIE--GLLV-SPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDL-EARR 116 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~--~~~~-~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl-~t~~ 116 (1155)
+...|+++.|+|+|++||+++.|+.|++|+..+.. .+.. ..|...|..++|+|++.+|++++.|++|+|||+ ..+.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 36789999999999999999999999999986555 3333 356789999999999999999999999999999 5568
Q ss_pred eeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccc
Q 001109 117 ITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAA 195 (1155)
Q Consensus 117 ~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~ 195 (1155)
++.++.+| ..|++++|+|+++++++|+.|++|+||+... ++.. ..+ .+
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~--~~~~--------~~l------------------~~--- 286 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT--GECV--------RKL------------------KG--- 286 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC--CeEE--------Eee------------------ec---
Confidence 89999988 7899999999999999999999999997665 3222 000 01
Q ss_pred cccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeE--EEEeccccc
Q 001109 196 FNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKV--VLVRGSKDL 273 (1155)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~--~~~~~~~~~ 273 (1155)
+...|.+ ++|++++ +.|++++.||.|++||+.++.. +...
T Consensus 287 --------------------hs~~is~-----~~f~~d~--------~~l~s~s~d~~i~vwd~~~~~~~~~~~~----- 328 (456)
T KOG0266|consen 287 --------------------HSDGISG-----LAFSPDG--------NLLVSASYDGTIRVWDLETGSKLCLKLL----- 328 (456)
T ss_pred --------------------cCCceEE-----EEECCCC--------CEEEEcCCCccEEEEECCCCceeeeecc-----
Confidence 2334444 9999984 5799999999999999999984 3321
Q ss_pred ccccccccCCCCCCCCCCcccccccccccC-CccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 274 QLKTEIVDDPSKNAGHNLSETVSDNEQVEK-EISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
.. + ... .+++++|+ |+|.+|++++.|+.+++||+..+
T Consensus 329 --~~-----------~-----------~~~~~~~~~~fs-p~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 329 --SG-----------A-----------ENSAPVTSVQFS-PNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred --cC-----------C-----------CCCCceeEEEEC-CCCcEEEEecCCCeEEEEEccCC
Confidence 10 0 122 69999999 99999999999999999999765
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=2.4e-23 Score=249.73 Aligned_cols=154 Identities=17% Similarity=0.175 Sum_probs=119.4
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
+|++++++|++++.||.|++||+..+...++..+... .... +++++.|+|++++|++++.|+++++|++....
T Consensus 295 ~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~------~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 295 AFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGA------ENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred EECCCCCEEEEcCCCccEEEEECCCCceeeeecccCC------CCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence 3456777899999999999999998874311122110 0122 69999999999999999999999999998754
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCC---CeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNS---PICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSN 702 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~---~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~ 702 (1155)
.. ..+.+|.. .+.+..+++.|+++.+|+.|+.|.+||+.++..+.. +.+
T Consensus 368 ~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~---l~~ 419 (456)
T KOG0266|consen 368 SV-------------------------GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQR---LEG 419 (456)
T ss_pred ce-------------------------eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhh---hcC
Confidence 32 33445554 345556688999999999999999999998766543 467
Q ss_pred C-CCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEe--CCceEEEEECC
Q 001109 703 S-NSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMT--KDAHIVVCDST 756 (1155)
Q Consensus 703 h-~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s--~Dg~I~vwd~~ 756 (1155)
| ...|..+++. |..+++++++ .|+.|++|...
T Consensus 420 h~~~~~~~~~~~----------------------~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 420 HSKAAVSDLSSH----------------------PTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCCceeccccC----------------------CCcCeeeecCcCCCceEEEecCC
Confidence 8 8889999998 7788899998 79999999643
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=8.7e-23 Score=225.66 Aligned_cols=148 Identities=20% Similarity=0.208 Sum_probs=123.3
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
.++|+++++++++.||.|++||+..+.. +..+. .|..+|.+++|+|+++.+++++.+|.|++|++....
T Consensus 142 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 142 AFSPDGTFVASSSQDGTIKLWDLRTGKC--VATLT---------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred EEcCcCCEEEEEcCCCcEEEEEcccccc--ceeEe---------cCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence 4556677888888899999999986652 22222 566689999999999999999999999999997632
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNS 705 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~ 705 (1155)
. ...+..|...|++++|+|++.++++++.||.|++||+.++..+... .+|..
T Consensus 211 ~-------------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~---~~~~~ 262 (289)
T cd00200 211 C-------------------------LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL---SGHTN 262 (289)
T ss_pred e-------------------------ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc---cccCC
Confidence 2 2344578889999999999999999999999999999987776654 36889
Q ss_pred CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEE
Q 001109 706 PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCD 754 (1155)
Q Consensus 706 ~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd 754 (1155)
+|.+++|+ |+++.|++++.|+.|++||
T Consensus 263 ~i~~~~~~----------------------~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 263 SVTSLAWS----------------------PDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEEC----------------------CCCCEEEEecCCCeEEecC
Confidence 99999998 7889999999999999996
No 49
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.1e-22 Score=210.81 Aligned_cols=147 Identities=14% Similarity=0.125 Sum_probs=116.2
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCC-CCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccC
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDAT-YPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKS 624 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~-~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~ 624 (1155)
.++|...+|+|+|.|.|||+|+-. ...-.+..+|. +|+..|++++|+|.|..|+++++|++|+||.....
T Consensus 157 ~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~---------g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 157 IWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD---------GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD 227 (312)
T ss_pred EEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec---------CccceEEEEEecCCCceEEEecCCcceEeeeeccC
Confidence 456667799999999999999876 44444444443 88889999999999999999999999999986531
Q ss_pred ccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCC----cc--EEEEec
Q 001109 625 SNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDIST----FS--VLFITD 698 (1155)
Q Consensus 625 ~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~----~~--~l~~~~ 698 (1155)
.-..|..++..|+|. +| .||+|+.|+.|+|+-... +. ++..
T Consensus 228 -----------------------------~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-- 274 (312)
T KOG0645|consen 228 -----------------------------LSGMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNLLAK-- 274 (312)
T ss_pred -----------------------------cchhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchHHHHHh--
Confidence 013578899999998 44 899999999999997654 21 1111
Q ss_pred cCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCC-CCcEEEEEeCCceEEEEECC
Q 001109 699 SLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDT-KKETLFFMTKDAHIVVCDST 756 (1155)
Q Consensus 699 ~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~p-d~~~L~s~s~Dg~I~vwd~~ 756 (1155)
....|...|.+++|. | ..++|++++.||.|++|.++
T Consensus 275 ~~~aHe~dVNsV~w~----------------------p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 275 KEGAHEVDVNSVQWN----------------------PKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred hhcccccccceEEEc----------------------CCCCCceeecCCCceEEEEEec
Confidence 123588999999998 4 36789999999999999875
No 50
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.9e-23 Score=215.26 Aligned_cols=192 Identities=17% Similarity=0.149 Sum_probs=154.4
Q ss_pred cEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccc----
Q 001109 552 RLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNE---- 627 (1155)
Q Consensus 552 ~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~---- 627 (1155)
.+++|++.|++||+||+..+... ..++. .+ .=.-+.|+|+|.++++|+.|..|.+.|..+....
T Consensus 78 d~~atas~dk~ir~wd~r~~k~~--~~i~~-------~~---eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~ 145 (313)
T KOG1407|consen 78 DLFATASGDKTIRIWDIRSGKCT--ARIET-------KG---ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ 145 (313)
T ss_pred cceEEecCCceEEEEEeccCcEE--EEeec-------cC---cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc
Confidence 47899999999999999988732 22221 12 3346789999999999999999999998775321
Q ss_pred -------------cceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEE
Q 001109 628 -------------ETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVL 694 (1155)
Q Consensus 628 -------------~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l 694 (1155)
.++.|.+++.+++.+++.+ .+.++..+..|+....||.|+|+|++||+|+.|..|.|||++..-|+
T Consensus 146 ~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp-sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~ 224 (313)
T KOG1407|consen 146 FKFEVNEISWNNSNDLFFLTNGLGCVEILSYP-SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICE 224 (313)
T ss_pred ccceeeeeeecCCCCEEEEecCCceEEEEecc-ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhh
Confidence 2334455667889998887 46677888999999999999999999999999999999999986666
Q ss_pred EEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeee---------e
Q 001109 695 FITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR---------S 765 (1155)
Q Consensus 695 ~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~---------~ 765 (1155)
+ +++.+..||..|+|| .||++|++||+|..|-|-+++||..++.. .
T Consensus 225 R---~isRldwpVRTlSFS----------------------~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVA 279 (313)
T KOG1407|consen 225 R---CISRLDWPVRTLSFS----------------------HDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVA 279 (313)
T ss_pred e---eeccccCceEEEEec----------------------cCcceeeccCccceEEeEecccCCeEEEeeccCCceeEE
Confidence 4 567899999999999 89999999999999999999999988655 4
Q ss_pred cccC-CCceEEEEEEeC
Q 001109 766 IHHQ-ESNAIYMCIIEG 781 (1155)
Q Consensus 766 ~~~~-~~~al~~~~ld~ 781 (1155)
+||+ +..|..+.-.++
T Consensus 280 WHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 280 WHPKRPLLAYACDDKDG 296 (313)
T ss_pred ecCCCceeeEEecCCCC
Confidence 5666 655555544443
No 51
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.91 E-value=3.9e-23 Score=220.48 Aligned_cols=160 Identities=18% Similarity=0.262 Sum_probs=134.2
Q ss_pred CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCce
Q 001109 81 PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGK 159 (1155)
Q Consensus 81 ~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~ 159 (1155)
.|-++|++|+|.|...++++++.|++|+|||+++|++..++.+| +.|..++|++-..||+++++|+.|+-|++.. ++
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~--nk 226 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY--NK 226 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh--hh
Confidence 46789999999999999999999999999999999999999988 8899999999999999999999999985543 33
Q ss_pred eeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccccccc
Q 001109 160 LIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNST 239 (1155)
Q Consensus 160 l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~ 239 (1155)
++ +.++| +.+.|. ++..+|..
T Consensus 227 vI--------------------------R~YhG-----------------------HlS~V~-----~L~lhPTl----- 247 (460)
T KOG0285|consen 227 VI--------------------------RHYHG-----------------------HLSGVY-----CLDLHPTL----- 247 (460)
T ss_pred hH--------------------------HHhcc-----------------------ccceeE-----EEeccccc-----
Confidence 32 11122 234344 49999974
Q ss_pred ccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEE
Q 001109 240 LGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLA 319 (1155)
Q Consensus 240 ~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~la 319 (1155)
+.|++|+.|.++++||+++...+.+..+ |...|.++.+. |-...++
T Consensus 248 ---dvl~t~grDst~RvWDiRtr~~V~~l~G------------------------------H~~~V~~V~~~-~~dpqvi 293 (460)
T KOG0285|consen 248 ---DVLVTGGRDSTIRVWDIRTRASVHVLSG------------------------------HTNPVASVMCQ-PTDPQVI 293 (460)
T ss_pred ---eeEEecCCcceEEEeeecccceEEEecC------------------------------CCCcceeEEee-cCCCceE
Confidence 5799999999999999999888776321 58889999998 7777899
Q ss_pred EEEcCCcEEEEEcCCC
Q 001109 320 VGYVDGDILLWNLRAA 335 (1155)
Q Consensus 320 sg~~DG~I~lWd~~s~ 335 (1155)
||+.|++|++||+..+
T Consensus 294 t~S~D~tvrlWDl~ag 309 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAG 309 (460)
T ss_pred EecCCceEEEeeeccC
Confidence 9999999999998654
No 52
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.91 E-value=7.2e-24 Score=229.98 Aligned_cols=285 Identities=17% Similarity=0.238 Sum_probs=203.7
Q ss_pred CCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceee
Q 001109 83 QLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLI 161 (1155)
Q Consensus 83 ~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~ 161 (1155)
+.+|..|.|.|+|++|++|++.|.+.+|+..+-..-..++.| +.|+++.+++++.+|++|+.+|.|++|......-+..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~ 175 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII 175 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence 568999999999999999999999999997332211122334 8999999999999999999999999995443210000
Q ss_pred ccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccccccccc
Q 001109 162 HSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLG 241 (1155)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~ 241 (1155)
+. + +...|.+ ++|+|.+
T Consensus 176 -----------------------------~a----------------h------h~eaIRd-----lafSpnD------- 192 (464)
T KOG0284|consen 176 -----------------------------QA----------------H------HAEAIRD-----LAFSPND------- 192 (464)
T ss_pred -----------------------------hH----------------h------hhhhhhe-----eccCCCC-------
Confidence 00 0 1245556 9999965
Q ss_pred ccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEE
Q 001109 242 FSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVG 321 (1155)
Q Consensus 242 ~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg 321 (1155)
..++++++||+|+|||....+...+.. +|.-.|.|+.|+ |.-..||+|
T Consensus 193 -skF~t~SdDg~ikiWdf~~~kee~vL~------------------------------GHgwdVksvdWH-P~kgLiasg 240 (464)
T KOG0284|consen 193 -SKFLTCSDDGTIKIWDFRMPKEERVLR------------------------------GHGWDVKSVDWH-PTKGLIASG 240 (464)
T ss_pred -ceeEEecCCCeEEEEeccCCchhheec------------------------------cCCCCcceeccC-CccceeEEc
Confidence 469999999999999988766544311 146779999999 999999999
Q ss_pred EcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEc
Q 001109 322 YVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYL 401 (1155)
Q Consensus 322 ~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l 401 (1155)
+.|..|++||.+++.+... ...|+..|..+.|.+ .+.+
T Consensus 241 skDnlVKlWDprSg~cl~t----------------lh~HKntVl~~~f~~-------n~N~------------------- 278 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSCLAT----------------LHGHKNTVLAVKFNP-------NGNW------------------- 278 (464)
T ss_pred cCCceeEeecCCCcchhhh----------------hhhccceEEEEEEcC-------CCCe-------------------
Confidence 9999999999999876432 224666677776653 1133
Q ss_pred cCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCccc
Q 001109 402 NWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLI 481 (1155)
Q Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~ 481 (1155)
++.+++|..+.+||++. .+-....
T Consensus 279 ----------------------------------------Llt~skD~~~kv~DiR~----------------mkEl~~~ 302 (464)
T KOG0284|consen 279 ----------------------------------------LLTGSKDQSCKVFDIRT----------------MKELFTY 302 (464)
T ss_pred ----------------------------------------eEEccCCceEEEEehhH----------------hHHHHHh
Confidence 33444455566777641 1122334
Q ss_pred ccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCC
Q 001109 482 PTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDG 561 (1155)
Q Consensus 482 ~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~Dg 561 (1155)
.+|...++++...| -...+|.+|+.||
T Consensus 303 r~Hkkdv~~~~WhP-----------------------------------------------------~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 303 RGHKKDVTSLTWHP-----------------------------------------------------LNESLFTSGGSDG 329 (464)
T ss_pred hcchhhheeecccc-----------------------------------------------------ccccceeeccCCC
Confidence 45666665543321 0123799999999
Q ss_pred cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEecc
Q 001109 562 STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIK 623 (1155)
Q Consensus 562 tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~ 623 (1155)
.|..|.+.... ++..+. .+|...|++|++.|-|-.||+|+.|.++++|.-..
T Consensus 330 svvh~~v~~~~--p~~~i~--------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 330 SVVHWVVGLEE--PLGEIP--------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred ceEEEeccccc--cccCCC--------cccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 99999986322 222222 26888999999999999999999999999997544
No 53
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3e-23 Score=222.53 Aligned_cols=280 Identities=12% Similarity=0.125 Sum_probs=207.7
Q ss_pred eeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccC
Q 001109 224 FVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEK 303 (1155)
Q Consensus 224 ~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1155)
+|+.+.|+|.- ..++++++|++|++||..++++... ++ +|..
T Consensus 110 ~vt~v~~hp~~--------~~v~~as~d~tikv~D~~tg~~e~~-------Lr-----------------------GHt~ 151 (406)
T KOG0295|consen 110 SVTRVIFHPSE--------ALVVSASEDATIKVFDTETGELERS-------LR-----------------------GHTD 151 (406)
T ss_pred ceeeeeeccCc--------eEEEEecCCceEEEEEccchhhhhh-------hh-----------------------cccc
Confidence 34449999984 3688999999999999999998543 22 1577
Q ss_pred CccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEE
Q 001109 304 EISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLF 383 (1155)
Q Consensus 304 ~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~ll 383 (1155)
.|.+++|+ ..|++||+.+.|=.+++||......- .|.. .+|..-|..
T Consensus 152 sv~di~~~-a~Gk~l~tcSsDl~~~LWd~~~~~~c------------~ks~---~gh~h~vS~----------------- 198 (406)
T KOG0295|consen 152 SVFDISFD-ASGKYLATCSSDLSAKLWDFDTFFRC------------IKSL---IGHEHGVSS----------------- 198 (406)
T ss_pred ceeEEEEe-cCccEEEecCCccchhheeHHHHHHH------------HHHh---cCcccceee-----------------
Confidence 79999999 89999999999999999998763110 0000 011111111
Q ss_pred EecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcc
Q 001109 384 VFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKK 463 (1155)
Q Consensus 384 v~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l 463 (1155)
..++|-+ ..++..+.+..+..|+.....+
T Consensus 199 -------------------------------------------V~f~P~g------d~ilS~srD~tik~We~~tg~c-- 227 (406)
T KOG0295|consen 199 -------------------------------------------VFFLPLG------DHILSCSRDNTIKAWECDTGYC-- 227 (406)
T ss_pred -------------------------------------------EEEEecC------CeeeecccccceeEEeccccee--
Confidence 1222221 2556667778888888542111
Q ss_pred cccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCccc
Q 001109 464 SQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLH 543 (1155)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~ 543 (1155)
..++++|.. | +..
T Consensus 228 --------------v~t~~~h~e---------------------------------------------w--------vr~ 240 (406)
T KOG0295|consen 228 --------------VKTFPGHSE---------------------------------------------W--------VRM 240 (406)
T ss_pred --------------EEeccCchH---------------------------------------------h--------EEE
Confidence 112222222 2 111
Q ss_pred ccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecC---------------CCeEE
Q 001109 544 DAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSV---------------TLNLA 608 (1155)
Q Consensus 544 l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspd---------------g~~La 608 (1155)
+ ....||.++|+++.|.+|++|-+.+.+. .. .+.+|..+|.+++|.|. +..|+
T Consensus 241 v-~v~~DGti~As~s~dqtl~vW~~~t~~~----k~-------~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~ 308 (406)
T KOG0295|consen 241 V-RVNQDGTIIASCSNDQTLRVWVVATKQC----KA-------ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLG 308 (406)
T ss_pred E-EecCCeeEEEecCCCceEEEEEeccchh----hh-------hhhccccceEEEEecccccCcchhhccCCCCCccEEE
Confidence 2 5667888999999999999999887752 11 12367789999999874 24799
Q ss_pred EEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEec
Q 001109 609 IGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDI 688 (1155)
Q Consensus 609 sgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi 688 (1155)
+|+.|++|++||+.++ .|+.++.+|...|..++|+|.|++|++..+|+++++||+
T Consensus 309 s~SrDktIk~wdv~tg-------------------------~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 309 SGSRDKTIKIWDVSTG-------------------------MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDL 363 (406)
T ss_pred eecccceEEEEeccCC-------------------------eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence 9999999999999884 356788999999999999999999999999999999999
Q ss_pred CCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEE
Q 001109 689 STFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCD 754 (1155)
Q Consensus 689 ~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd 754 (1155)
++++|+.... .|..-|+++.|. .+..++++|+-|.++++|.
T Consensus 364 ~~~~cmk~~~---ah~hfvt~lDfh----------------------~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 364 KNLQCMKTLE---AHEHFVTSLDFH----------------------KTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ccceeeeccC---CCcceeEEEecC----------------------CCCceEEeccccceeeeee
Confidence 9999987654 599999999997 3344899999999999996
No 54
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.4e-23 Score=225.69 Aligned_cols=201 Identities=15% Similarity=0.143 Sum_probs=160.6
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCc---eEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCC
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNI---EGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA 114 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~---~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t 114 (1155)
..|..+|.-+.||++|++||+|+.|.+..+|..... +...+. .|..+|..+.||||.++|++++.|..+.+||+.+
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence 578999999999999999999999999999976432 222222 5678999999999999999999999999999999
Q ss_pred CceeeeecCC--CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccc
Q 001109 115 RRITSTLPWE--SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKG 192 (1155)
Q Consensus 115 ~~~~~~l~~~--~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~ 192 (1155)
|.+...++.. ..+.++++.|||..+++|+.|+++..|+.|... +.
T Consensus 301 gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~------------------------------- 347 (519)
T KOG0293|consen 301 GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LG------------------------------- 347 (519)
T ss_pred chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hh-------------------------------
Confidence 9998877644 678999999999999999999999888766532 10
Q ss_pred ccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccc
Q 001109 193 KAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKD 272 (1155)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~ 272 (1155)
-|.+. ....|.. ++..+++ +.+++.+.|..|++++..+.......
T Consensus 348 ------------~W~gv------r~~~v~d-----lait~Dg--------k~vl~v~~d~~i~l~~~e~~~dr~li---- 392 (519)
T KOG0293|consen 348 ------------NWEGV------RDPKVHD-----LAITYDG--------KYVLLVTVDKKIRLYNREARVDRGLI---- 392 (519)
T ss_pred ------------ccccc------ccceeEE-----EEEcCCC--------cEEEEEecccceeeechhhhhhhccc----
Confidence 01000 1233444 8888874 57999999999999997654433210
Q ss_pred cccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 273 LQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
.+...|++.+.+ .||+++++--.+..|++||+...
T Consensus 393 ---------------------------se~~~its~~iS-~d~k~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 393 ---------------------------SEEQPITSFSIS-KDGKLALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred ---------------------------cccCceeEEEEc-CCCcEEEEEcccCeeEEeecchh
Confidence 035679999999 99999999999999999999854
No 55
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1.1e-21 Score=224.95 Aligned_cols=539 Identities=14% Similarity=0.140 Sum_probs=315.1
Q ss_pred eccCCCCCceEEEEcCCCC---EEEEEEcCCeEEEEccC--CceEEEEcCCCCCEEEEEEEcCCcEEEEE-ecCCeEEEE
Q 001109 37 LHYGIPSTASILAFDHVQS---LLAIGTQDGRIKVIGGD--NIEGLLVSPKQLAFKHLEFLQNQGFLVSI-SSGNEIQLW 110 (1155)
Q Consensus 37 ~~~G~~~~vs~lafsp~g~---lLAsgs~DG~I~vw~~~--~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~-s~Dg~I~vW 110 (1155)
...||...|+|+.+=|+.+ .|++|..||+|++|... ...++...++ ..+.++++... ..+.++ +.|+++.+|
T Consensus 49 ~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~cv~a~-~~~~~~~~ad~~v~vw 126 (764)
T KOG1063|consen 49 TLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKECVCVVAR-SSVMTCKAADGTVSVW 126 (764)
T ss_pred eccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC-cceeEEEEEee-eeEEEeeccCceEEEe
Confidence 3479999999999999887 89999999999999875 2333444444 45566666654 333333 678899999
Q ss_pred ECCCCc--e------------------------------------------------eeeecCC-CceeEEEEecC---C
Q 001109 111 DLEARR--I------------------------------------------------TSTLPWE-SNITAFSVIFG---T 136 (1155)
Q Consensus 111 Dl~t~~--~------------------------------------------------~~~l~~~-~~Vtsva~spd---~ 136 (1155)
|.+..+ + +..+.+| ..|.+++|..- .
T Consensus 127 ~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~ 206 (764)
T KOG1063|consen 127 DKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDD 206 (764)
T ss_pred ecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCc
Confidence 884333 1 1122233 34667777633 3
Q ss_pred CEEEEEeCCCcEEEEEecCCCce-----------ee---------ccceeccCCcee--eecee-EeeEecccccccccc
Q 001109 137 SYMYIGDEYGMVYVLKYDTEEGK-----------LI---------HSPYYVPKDVIE--VFNHL-LLEFCPNHIQREKGK 193 (1155)
Q Consensus 137 ~~l~~G~~dG~V~vw~~d~~~~~-----------l~---------~~~~~i~~~~~~--~~~~~-~l~~~p~~~~~~~~~ 193 (1155)
-+|++++.|..|++|++-..+.. +. ...|+|..+.+. |...| ++.|+|.....+..
T Consensus 207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSA- 285 (764)
T KOG1063|consen 207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSA- 285 (764)
T ss_pred EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheec-
Confidence 47889999999999997653300 00 011333333222 44455 88999998655533
Q ss_pred cccccceeeecCCCCCCCcc--------cc-cccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCe-
Q 001109 194 AAFNASLLFYCMPPDESGFI--------DF-IIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDK- 263 (1155)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~--------~~-~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~- 263 (1155)
.++.++.+++ |...+|.= .. ....-++ ..|+|+. +.+++-+..|..++|-.....
T Consensus 286 -SaDksmiiW~-pd~~tGiWv~~vRlGe~gg~a~GF~g-----~lw~~n~--------~~ii~~g~~Gg~hlWkt~d~~~ 350 (764)
T KOG1063|consen 286 -SADKSMIIWK-PDENTGIWVDVVRLGEVGGSAGGFWG-----GLWSPNS--------NVIIAHGRTGGFHLWKTKDKTF 350 (764)
T ss_pred -ccCcceEEEe-cCCccceEEEEEEeecccccccceee-----EEEcCCC--------CEEEEecccCcEEEEeccCccc
Confidence 3333444332 22222210 00 0112334 7889874 467887888999999832211
Q ss_pred EEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCcccccc
Q 001109 264 VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKS 343 (1155)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~ 343 (1155)
-... . .-. +|.+.|+.+.|. |.|.+|++.+.|.+-|++-.-..+.. ++.
T Consensus 351 w~~~-~---------------~iS------------GH~~~V~dv~W~-psGeflLsvs~DQTTRlFa~wg~q~~--wHE 399 (764)
T KOG1063|consen 351 WTQE-P---------------VIS------------GHVDGVKDVDWD-PSGEFLLSVSLDQTTRLFARWGRQQE--WHE 399 (764)
T ss_pred eeec-c---------------ccc------------cccccceeeeec-CCCCEEEEeccccceeeecccccccc--eee
Confidence 1110 0 011 258899999999 99999999999999999866522111 110
Q ss_pred CCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCC-
Q 001109 344 ENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKG- 422 (1155)
Q Consensus 344 ~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~- 422 (1155)
+.+ ..-|+.-+..+++.. +...|++|+++ +.++++...-.- ...+ ....+
T Consensus 400 ------iaR----PQiHGyDl~c~~~vn-------~~~~FVSgAdE----KVlRvF~aPk~f-v~~l-------~~i~g~ 450 (764)
T KOG1063|consen 400 ------IAR----PQIHGYDLTCLSFVN-------EDLQFVSGADE----KVLRVFEAPKSF-VKSL-------MAICGK 450 (764)
T ss_pred ------ecc----cccccccceeeehcc-------CCceeeecccc----eeeeeecCcHHH-HHHH-------HHHhCc
Confidence 101 112444455555532 24558888774 777776543110 0000 00000
Q ss_pred ceeEEEEecCCC------CCCCceeEEEEcCCCee-EEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEee
Q 001109 423 SFVDMVLLPNGM------NESHGTLPCVLTNPGKL-QVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCM 495 (1155)
Q Consensus 423 ~v~d~~~~~~~~------~~~~~~~l~v~~~~G~l-~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~ 495 (1155)
...+...+|++- -+.++. +.-.+++|.- ..+-.. +....|..+ ..
T Consensus 451 ~~~~~~~~p~gA~VpaLGLSnKa~-~~~e~~~G~~~~~~~et---------------~~~~~p~~L-----------~e- 502 (764)
T KOG1063|consen 451 CFKGSDELPDGANVPALGLSNKAF-FPGETNTGGEAAVCAET---------------PLAAAPCEL-----------TE- 502 (764)
T ss_pred cccCchhcccccccccccccCCCC-cccccccccccceeeec---------------ccccCchhc-----------cC-
Confidence 011111111110 000000 0000111110 000000 000000000 00
Q ss_pred ecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCc----ccCCCCCcccccccCCcCcEEEEEECC-----CcEEEE
Q 001109 496 VCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWP----LTGGIPCQLHDAEDYLVERLYIAGYRD-----GSTRIW 566 (1155)
Q Consensus 496 ~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~----l~gg~~~~~~l~~~s~~~~lLaTgs~D-----gtVrlW 566 (1155)
||-...+..+..|| +.||...+.++ +.+|+++++||+... -.|++|
T Consensus 503 ------------------------PP~EdqLq~~tLwPEv~KLYGHGyEv~~l-~~s~~gnliASaCKS~~~ehAvI~lw 557 (764)
T KOG1063|consen 503 ------------------------PPTEDQLQQNTLWPEVHKLYGHGYEVYAL-AISPTGNLIASACKSSLKEHAVIRLW 557 (764)
T ss_pred ------------------------CChHHHHHHhccchhhHHhccCceeEEEE-EecCCCCEEeehhhhCCccceEEEEE
Confidence 00000112334454 56776666677 889999999999654 358999
Q ss_pred eCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCC
Q 001109 567 DATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGG 646 (1155)
Q Consensus 567 D~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~ 646 (1155)
+...-.- .+. +.+|...|+.|+|||||++|++.+.|.++.+|........ .+.
T Consensus 558 ~t~~W~~--~~~---------L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~-e~~--------------- 610 (764)
T KOG1063|consen 558 NTANWLQ--VQE---------LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD-EFR--------------- 610 (764)
T ss_pred eccchhh--hhe---------ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccch-hhh---------------
Confidence 8765431 122 2389999999999999999999999999999998653221 000
Q ss_pred CCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCc--cEEEEeccCCCCCCCeeEEEEeecCCCCccccC
Q 001109 647 DGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTF--SVLFITDSLSNSNSPVLYLAVKSLSDTSNLTIS 724 (1155)
Q Consensus 647 ~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~--~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~ 724 (1155)
+ ...+.|+.-|++..|+|++.++||+|.|++|+||..... ..+... ....++.+|+.++|.+.-..
T Consensus 611 --f---a~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~-a~~~~~~aVTAv~~~~~~~~------ 678 (764)
T KOG1063|consen 611 --F---ACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF-ACLKFSLAVTAVAYLPVDHN------ 678 (764)
T ss_pred --h---ccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh-chhccCCceeeEEeeccccc------
Confidence 1 224679999999999999999999999999999999877 333322 22358899999999743221
Q ss_pred CCCCCCCCCCCCCCcEEEEEeCCceEEEEECC
Q 001109 725 PKDSDINSSNDTKKETLFFMTKDAHIVVCDST 756 (1155)
Q Consensus 725 ~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~ 756 (1155)
-.+..+++|.+-|.|.+|...
T Consensus 679 -----------e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 679 -----------EKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred -----------cccceEEEEecccEEEEEecc
Confidence 224488999999999999843
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.91 E-value=5.1e-24 Score=225.90 Aligned_cols=144 Identities=13% Similarity=0.283 Sum_probs=116.9
Q ss_pred CcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccce
Q 001109 551 ERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETL 630 (1155)
Q Consensus 551 ~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~ 630 (1155)
.++++|+|.|.|||+|+.++..+ +.++. ||...|-|+.+ .++++++|+.|.+|++||+..++
T Consensus 330 ~kyIVsASgDRTikvW~~st~ef--vRtl~---------gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~----- 391 (499)
T KOG0281|consen 330 DKYIVSASGDRTIKVWSTSTCEF--VRTLN---------GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA----- 391 (499)
T ss_pred cceEEEecCCceEEEEeccceee--ehhhh---------cccccceehhc--cCeEEEecCCCceEEEEeccccH-----
Confidence 34899999999999999988763 23333 88888999886 57899999999999999998764
Q ss_pred eeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEE---E---EeccCCCCC
Q 001109 631 NLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVL---F---ITDSLSNSN 704 (1155)
Q Consensus 631 ~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l---~---~~~~~~~h~ 704 (1155)
|+..++||..-|.||.|. .+.+++|..||+|+|||+..+.-- . ....+..|+
T Consensus 392 --------------------cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hs 449 (499)
T KOG0281|consen 392 --------------------CLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS 449 (499)
T ss_pred --------------------HHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhcc
Confidence 345678999999999994 678999999999999999764211 1 112235799
Q ss_pred CCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCC
Q 001109 705 SPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTG 758 (1155)
Q Consensus 705 ~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG 758 (1155)
+.|-.|.|. ...+++.|.|.+|.|||-..|
T Consensus 450 gRVFrLQFD------------------------~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 450 GRVFRLQFD------------------------EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ceeEEEeec------------------------ceEEEeccCCCeEEEEEcCCC
Confidence 999999996 667999999999999996654
No 57
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.90 E-value=9e-22 Score=206.78 Aligned_cols=150 Identities=14% Similarity=0.199 Sum_probs=126.1
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
.|...+...++|+-|+.|++||..... .+++++ ||..+|+.|..+|+|.++.+-+.|.+|++||++...
T Consensus 181 ~f~d~s~qv~sggIdn~ikvWd~r~~d--~~~~ls---------Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 181 GFKDTSDQVISGGIDNDIKVWDLRKND--GLYTLS---------GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA 249 (338)
T ss_pred EecccccceeeccccCceeeeccccCc--ceEEee---------cccCceeeEEeccCCCccccccccceEEEEEecccC
Confidence 444555578899999999999997766 346665 899999999999999999999999999999998743
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCC----CeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNS----PICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLS 701 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~----~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~ 701 (1155)
. +.+|+..|.+|.. .....+|||+++.+.+|+.|..|.+||.....++|. +.
T Consensus 250 p---------------------~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyk---lp 305 (338)
T KOG0265|consen 250 P---------------------SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYK---LP 305 (338)
T ss_pred C---------------------CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEE---cC
Confidence 2 2345566666543 345678999999999999999999999999888886 46
Q ss_pred CCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEE
Q 001109 702 NSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVV 752 (1155)
Q Consensus 702 ~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~v 752 (1155)
||.+.|..++|. |...+|.+++.|.+|++
T Consensus 306 Gh~gsvn~~~Fh----------------------p~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 306 GHYGSVNEVDFH----------------------PTEPIILSCSSDKTIYL 334 (338)
T ss_pred CcceeEEEeeec----------------------CCCcEEEEeccCceeEe
Confidence 899999999999 88899999999999987
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.90 E-value=2.4e-23 Score=220.86 Aligned_cols=192 Identities=18% Similarity=0.267 Sum_probs=152.5
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeee
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTL 121 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l 121 (1155)
..|+|+-|+. +.+++|..|.+|+|||....+++..+ +|.+.|.+|+|.. +.+++||.|.+|+|||+++|+++.++
T Consensus 198 kgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 198 KGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred CceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHH
Confidence 4699999975 57899999999999999988876554 6789999999975 58999999999999999999999999
Q ss_pred cCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccce
Q 001109 122 PWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASL 200 (1155)
Q Consensus 122 ~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 200 (1155)
-+| ..|-.+.|+ ..+|++.+.|.++.||+++....... . +.+.|
T Consensus 274 ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~--------r-----------------rVLvG-------- 318 (499)
T KOG0281|consen 274 IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITL--------R-----------------RVLVG-------- 318 (499)
T ss_pred hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHH--------H-----------------HHHhh--------
Confidence 888 778888885 56999999999999998776321000 0 00011
Q ss_pred eeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccc
Q 001109 201 LFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIV 280 (1155)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~ 280 (1155)
+..+ |+.+.|+. +++++|+.|.+|++|++.++..+.+. +
T Consensus 319 ---------------HrAa-----VNvVdfd~----------kyIVsASgDRTikvW~~st~efvRtl-------~---- 357 (499)
T KOG0281|consen 319 ---------------HRAA-----VNVVDFDD----------KYIVSASGDRTIKVWSTSTCEFVRTL-------N---- 357 (499)
T ss_pred ---------------hhhh-----eeeecccc----------ceEEEecCCceEEEEeccceeeehhh-------h----
Confidence 1222 33376653 57999999999999999999988752 2
Q ss_pred cCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCC
Q 001109 281 DDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAA 336 (1155)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~ 336 (1155)
+|...|.|+.+. |+++++|+.|.+|++||+..+.
T Consensus 358 -------------------gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~ 391 (499)
T KOG0281|consen 358 -------------------GHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGA 391 (499)
T ss_pred -------------------cccccceehhcc---CeEEEecCCCceEEEEeccccH
Confidence 157778888764 9999999999999999997653
No 59
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.8e-22 Score=220.26 Aligned_cols=294 Identities=15% Similarity=0.206 Sum_probs=213.5
Q ss_pred eeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCC
Q 001109 225 VEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKE 304 (1155)
Q Consensus 225 v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1155)
|++++|+|..++ + ++++++ -.+.|++..+....+.+.- -.+.
T Consensus 29 vssl~fsp~~P~------d-~aVt~S-~rvqly~~~~~~~~k~~sr------------------------------Fk~~ 70 (487)
T KOG0310|consen 29 VSSLCFSPKHPY------D-FAVTSS-VRVQLYSSVTRSVRKTFSR------------------------------FKDV 70 (487)
T ss_pred ceeEecCCCCCC------c-eEEecc-cEEEEEecchhhhhhhHHh------------------------------hccc
Confidence 344999998876 4 444443 3678898877666543211 1567
Q ss_pred ccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEE
Q 001109 305 ISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFV 384 (1155)
Q Consensus 305 V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv 384 (1155)
|++++|- .||+.||.|...|.|+++|+.+....+ ...+|..||...+|++ .++.+++
T Consensus 71 v~s~~fR-~DG~LlaaGD~sG~V~vfD~k~r~iLR----------------~~~ah~apv~~~~f~~------~d~t~l~ 127 (487)
T KOG0310|consen 71 VYSVDFR-SDGRLLAAGDESGHVKVFDMKSRVILR----------------QLYAHQAPVHVTKFSP------QDNTMLV 127 (487)
T ss_pred eeEEEee-cCCeEEEccCCcCcEEEeccccHHHHH----------------HHhhccCceeEEEecc------cCCeEEE
Confidence 9999998 899999999999999999976532111 1235778998888876 5666777
Q ss_pred ecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCccc
Q 001109 385 FGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKS 464 (1155)
Q Consensus 385 ~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~ 464 (1155)
+|++| ..+ .+||.....
T Consensus 128 s~sDd----~v~-------------------------------------------------------k~~d~s~a~---- 144 (487)
T KOG0310|consen 128 SGSDD----KVV-------------------------------------------------------KYWDLSTAY---- 144 (487)
T ss_pred ecCCC----ceE-------------------------------------------------------EEEEcCCcE----
Confidence 77664 222 334432110
Q ss_pred ccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccc
Q 001109 465 QEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHD 544 (1155)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l 544 (1155)
....+.+|...|.|.++++
T Consensus 145 ------------v~~~l~~htDYVR~g~~~~------------------------------------------------- 163 (487)
T KOG0310|consen 145 ------------VQAELSGHTDYVRCGDISP------------------------------------------------- 163 (487)
T ss_pred ------------EEEEecCCcceeEeecccc-------------------------------------------------
Confidence 1124556777777765532
Q ss_pred cccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccC
Q 001109 545 AEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKS 624 (1155)
Q Consensus 545 ~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~ 624 (1155)
..+.+++|||.||+||+||+.... ..+..+ .|..||..+.|-|.|.++|+++.. .|++||+.++
T Consensus 164 ----~~~hivvtGsYDg~vrl~DtR~~~-~~v~el----------nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G 227 (487)
T KOG0310|consen 164 ----ANDHIVVTGSYDGKVRLWDTRSLT-SRVVEL----------NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTG 227 (487)
T ss_pred ----CCCeEEEecCCCceEEEEEeccCC-ceeEEe----------cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCC
Confidence 112379999999999999997664 233444 466799999999999999998754 7999999864
Q ss_pred ccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCC
Q 001109 625 SNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSN 704 (1155)
Q Consensus 625 ~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~ 704 (1155)
... ...+..|+..||||++..++..|.+|+.|+.|++||+.+.++++... .+
T Consensus 228 ~ql------------------------l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~ 279 (487)
T KOG0310|consen 228 GQL------------------------LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YP 279 (487)
T ss_pred cee------------------------hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cc
Confidence 321 12334599999999999999999999999999999999999988653 68
Q ss_pred CCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeecccC
Q 001109 705 SPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSIHHQ 769 (1155)
Q Consensus 705 ~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~~~ 769 (1155)
+||.+++.+ ||++.++.|..||.+.+-+...++--...+..+.
T Consensus 280 ~pvLsiavs----------------------~dd~t~viGmsnGlv~~rr~~~k~k~s~~~~~r~ 322 (487)
T KOG0310|consen 280 GPVLSIAVS----------------------PDDQTVVIGMSNGLVSIRRREVKKKPSKEPKRRA 322 (487)
T ss_pred cceeeEEec----------------------CCCceEEEecccceeeeehhhcccCCCccccccc
Confidence 899999999 8999999999999998876555443333334433
No 60
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.89 E-value=1.7e-21 Score=201.50 Aligned_cols=214 Identities=18% Similarity=0.202 Sum_probs=171.8
Q ss_pred eeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCC
Q 001109 36 TLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA 114 (1155)
Q Consensus 36 ~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t 114 (1155)
....||..+++.+.|+.+|.+|.+++.|-++.||-..+++.+-++ .|+++|+++...-+..+|+++++|+++++||+++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 456799999999999999999999999999999999888888776 5799999999999999999999999999999999
Q ss_pred CceeeeecCCCceeEEEEecCCCEEEEEeCC-----CcEEEEEecCCCcee-eccceeccCCceeeeceeEeeEeccccc
Q 001109 115 RRITSTLPWESNITAFSVIFGTSYMYIGDEY-----GMVYVLKYDTEEGKL-IHSPYYVPKDVIEVFNHLLLEFCPNHIQ 188 (1155)
Q Consensus 115 ~~~~~~l~~~~~Vtsva~spd~~~l~~G~~d-----G~V~vw~~d~~~~~l-~~~~~~i~~~~~~~~~~~~l~~~p~~~~ 188 (1155)
|+++++++....|..+.|+++|++++..+++ +.|.++++....... ...||
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~----------------------- 140 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPY----------------------- 140 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCce-----------------------
Confidence 9999999999999999999999988876654 445555433211100 01111
Q ss_pred ccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEe
Q 001109 189 REKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVR 268 (1155)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~ 268 (1155)
+.++. +.+.++. +.|.|.+ ..|++|.+||.|..||+++|+.+...
T Consensus 141 --------------~kI~t--------~~skit~-----a~Wg~l~--------~~ii~Ghe~G~is~~da~~g~~~v~s 185 (327)
T KOG0643|consen 141 --------------LKIPT--------PDSKITS-----ALWGPLG--------ETIIAGHEDGSISIYDARTGKELVDS 185 (327)
T ss_pred --------------EEecC--------Cccceee-----eeecccC--------CEEEEecCCCcEEEEEcccCceeeec
Confidence 11111 1234444 8899975 56999999999999999998765421
Q ss_pred cccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCC
Q 001109 269 GSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAAS 337 (1155)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~ 337 (1155)
. +.|...|+.++++ +|.++++||+.|.+-++||+.+...
T Consensus 186 ~-----------------------------~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~tl~v 224 (327)
T KOG0643|consen 186 D-----------------------------EEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVRTLEV 224 (327)
T ss_pred h-----------------------------hhhcccccccccc-CCcceEEecccCccceeeeccceee
Confidence 0 1257799999999 9999999999999999999988654
No 61
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.6e-21 Score=211.51 Aligned_cols=288 Identities=16% Similarity=0.214 Sum_probs=198.0
Q ss_pred CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCC---ceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCC
Q 001109 81 PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEAR---RITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTE 156 (1155)
Q Consensus 81 ~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~---~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~ 156 (1155)
.|...|..+.||++|++|+|++.|.+..+|++..- ++..++.+| ..|..+.|+||+++|++.+.+-.+.+|+.++.
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG 301 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence 57889999999999999999999999999997644 346777776 78999999999999999988888888866664
Q ss_pred CceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccc
Q 001109 157 EGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHV 236 (1155)
Q Consensus 157 ~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~ 236 (1155)
..... +. .+ .++.+.+++|.|++
T Consensus 302 d~~~~-----------------------------y~------------------------~~--~~~S~~sc~W~pDg-- 324 (519)
T KOG0293|consen 302 DLRHL-----------------------------YP------------------------SG--LGFSVSSCAWCPDG-- 324 (519)
T ss_pred hhhhh-----------------------------cc------------------------cC--cCCCcceeEEccCC--
Confidence 31100 00 00 11234459999985
Q ss_pred cccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCC
Q 001109 237 NSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGS 316 (1155)
Q Consensus 237 ~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~ 316 (1155)
.++++|+.|+.+..||+.....-.-.+ .....|.+++.+ +||+
T Consensus 325 ------~~~V~Gs~dr~i~~wdlDgn~~~~W~g------------------------------vr~~~v~dlait-~Dgk 367 (519)
T KOG0293|consen 325 ------FRFVTGSPDRTIIMWDLDGNILGNWEG------------------------------VRDPKVHDLAIT-YDGK 367 (519)
T ss_pred ------ceeEecCCCCcEEEecCCcchhhcccc------------------------------cccceeEEEEEc-CCCc
Confidence 469999999999999987543222111 024568999999 9999
Q ss_pred eEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceE
Q 001109 317 VLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVL 396 (1155)
Q Consensus 317 ~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~l 396 (1155)
++++...|..|++++..+...... + ....||.++
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~l------------i-----se~~~its~----------------------------- 401 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGL------------I-----SEEQPITSF----------------------------- 401 (519)
T ss_pred EEEEEecccceeeechhhhhhhcc------------c-----cccCceeEE-----------------------------
Confidence 999999999999998876432100 0 111233332
Q ss_pred EEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCccc
Q 001109 397 TMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQ 476 (1155)
Q Consensus 397 tvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~ 476 (1155)
.+. .++..+++-..+.++++||... ..
T Consensus 402 -------------------------------~iS------~d~k~~LvnL~~qei~LWDl~e----------------~~ 428 (519)
T KOG0293|consen 402 -------------------------------SIS------KDGKLALVNLQDQEIHLWDLEE----------------NK 428 (519)
T ss_pred -------------------------------EEc------CCCcEEEEEcccCeeEEeecch----------------hh
Confidence 111 1222444555667889999751 11
Q ss_pred CCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEE
Q 001109 477 YPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIA 556 (1155)
Q Consensus 477 ~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaT 556 (1155)
.+....+|.-. .|. +. .--|| .+..++++
T Consensus 429 lv~kY~Ghkq~----~fi------------------------------Ir------SCFgg-----------~~~~fiaS 457 (519)
T KOG0293|consen 429 LVRKYFGHKQG----HFI------------------------------IR------SCFGG-----------GNDKFIAS 457 (519)
T ss_pred HHHHhhccccc----ceE------------------------------EE------eccCC-----------CCcceEEe
Confidence 12222222211 000 00 00011 22358999
Q ss_pred EECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCC-CeEEEEeCCCeEEEEEecc
Q 001109 557 GYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVT-LNLAIGSSSGLVWLYNLIK 623 (1155)
Q Consensus 557 gs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg-~~Lasgs~dG~V~lwd~~~ 623 (1155)
||+|+.|+||+..++.+ +.++ .||...|++|++.|.. .++|+|++||+||||....
T Consensus 458 GSED~kvyIWhr~sgkl--l~~L---------sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 458 GSEDSKVYIWHRISGKL--LAVL---------SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCceEEEEEccCCce--eEee---------cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999999999998873 4444 3899999999999965 5889999999999998765
No 62
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.88 E-value=5.5e-22 Score=202.86 Aligned_cols=200 Identities=16% Similarity=0.218 Sum_probs=160.3
Q ss_pred cCCCCCceEEEEcC---CCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCC
Q 001109 39 YGIPSTASILAFDH---VQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA 114 (1155)
Q Consensus 39 ~G~~~~vs~lafsp---~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t 114 (1155)
.||..+|-.|+||| +|-+|.+++.||.=-+-+.+++..+-++ .|+++|+......|-.+-+++++|-+-+|||..+
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~t 90 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVT 90 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhh
Confidence 59999999999985 7889999999998888877777766555 5789999999999987888999999999999999
Q ss_pred CceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccc
Q 001109 115 RRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKA 194 (1155)
Q Consensus 115 ~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~ 194 (1155)
|..+++++...-|.+++|+.|.++|++|+.+..++|+++...+..+. .+. +
T Consensus 91 gdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~----E~~-----------------------g-- 141 (334)
T KOG0278|consen 91 GDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK----EIS-----------------------G-- 141 (334)
T ss_pred hhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch----hhc-----------------------C--
Confidence 99999999889999999999999999999999888875543221110 000 0
Q ss_pred ccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccc
Q 001109 195 AFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQ 274 (1155)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~ 274 (1155)
+.+.|.. +.|.-.+ +.+++...|++|||||.+++..++..-
T Consensus 142 ---------------------htg~Ir~-----v~wc~eD--------~~iLSSadd~tVRLWD~rTgt~v~sL~----- 182 (334)
T KOG0278|consen 142 ---------------------HTGGIRT-----VLWCHED--------KCILSSADDKTVRLWDHRTGTEVQSLE----- 182 (334)
T ss_pred ---------------------CCCccee-----EEEeccC--------ceEEeeccCCceEEEEeccCcEEEEEe-----
Confidence 2344444 7776653 579999999999999999999887521
Q ss_pred cccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 275 LKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
-...|+++..+ +||.+|.+++. +.|.+||..+
T Consensus 183 --------------------------~~s~VtSlEvs-~dG~ilTia~g-ssV~Fwdaks 214 (334)
T KOG0278|consen 183 --------------------------FNSPVTSLEVS-QDGRILTIAYG-SSVKFWDAKS 214 (334)
T ss_pred --------------------------cCCCCcceeec-cCCCEEEEecC-ceeEEecccc
Confidence 15679999999 99998877654 5788998754
No 63
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.88 E-value=4.1e-22 Score=220.91 Aligned_cols=285 Identities=15% Similarity=0.148 Sum_probs=203.1
Q ss_pred eeeEEEEeecccccccccccEEEEEEcCCeEEEEEccC-CeEEEEecccccccccccccCCCCCCCCCCccccccccccc
Q 001109 224 FVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSE-DKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVE 302 (1155)
Q Consensus 224 ~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1155)
.|+++.|.|... .+|++++.|+.|+|||+.. ++++++. .+|.
T Consensus 216 gvsai~~fp~~~-------hLlLS~gmD~~vklW~vy~~~~~lrtf------------------------------~gH~ 258 (503)
T KOG0282|consen 216 GVSAIQWFPKKG-------HLLLSGGMDGLVKLWNVYDDRRCLRTF------------------------------KGHR 258 (503)
T ss_pred ccchhhhcccee-------eEEEecCCCceEEEEEEecCcceehhh------------------------------hcch
Confidence 455689999543 5899999999999999876 6777652 1268
Q ss_pred CCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceE
Q 001109 303 KEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQL 382 (1155)
Q Consensus 303 ~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~l 382 (1155)
..|.+++|+ ++|+.++|++-|+.|++||+.++.+... +. .+.++..+.|.+
T Consensus 259 k~Vrd~~~s-~~g~~fLS~sfD~~lKlwDtETG~~~~~------------f~-----~~~~~~cvkf~p----------- 309 (503)
T KOG0282|consen 259 KPVRDASFN-NCGTSFLSASFDRFLKLWDTETGQVLSR------------FH-----LDKVPTCVKFHP----------- 309 (503)
T ss_pred hhhhhhhcc-ccCCeeeeeecceeeeeeccccceEEEE------------Ee-----cCCCceeeecCC-----------
Confidence 999999999 9999999999999999999999854221 10 011122222211
Q ss_pred EEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCc
Q 001109 383 FVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPK 462 (1155)
Q Consensus 383 lv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~ 462 (1155)
.++..+++++.++.|+.||++..
T Consensus 310 ------------------------------------------------------d~~n~fl~G~sd~ki~~wDiRs~--- 332 (503)
T KOG0282|consen 310 ------------------------------------------------------DNQNIFLVGGSDKKIRQWDIRSG--- 332 (503)
T ss_pred ------------------------------------------------------CCCcEEEEecCCCcEEEEeccch---
Confidence 11345667777888999997621
Q ss_pred ccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcc
Q 001109 463 KSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQL 542 (1155)
Q Consensus 463 l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~ 542 (1155)
++....--|-..|.
T Consensus 333 -------------kvvqeYd~hLg~i~----------------------------------------------------- 346 (503)
T KOG0282|consen 333 -------------KVVQEYDRHLGAIL----------------------------------------------------- 346 (503)
T ss_pred -------------HHHHHHHhhhhhee-----------------------------------------------------
Confidence 11111100111111
Q ss_pred cccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEec
Q 001109 543 HDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLI 622 (1155)
Q Consensus 543 ~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~ 622 (1155)
.+ .|-++++.++|.+.|++||||+...+.... +.+. ...| ...++..+|++..++..+.|..+.+|.+.
T Consensus 347 ~i-~F~~~g~rFissSDdks~riWe~~~~v~ik-~i~~-------~~~h--smP~~~~~P~~~~~~aQs~dN~i~ifs~~ 415 (503)
T KOG0282|consen 347 DI-TFVDEGRRFISSSDDKSVRIWENRIPVPIK-NIAD-------PEMH--TMPCLTLHPNGKWFAAQSMDNYIAIFSTV 415 (503)
T ss_pred ee-EEccCCceEeeeccCccEEEEEcCCCccch-hhcc-------hhhc--cCcceecCCCCCeehhhccCceEEEEecc
Confidence 12 566888899999999999999998875211 1111 1133 56689999999999999999999999865
Q ss_pred cCccccceeeeccCCceEEEecCCCCCceeEEeecCC--CCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccC
Q 001109 623 KSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLN--SPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSL 700 (1155)
Q Consensus 623 ~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~--~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~ 700 (1155)
..-.. .....|.+|. |--..|.|||||++|++|+.||.|.+||-.+-+++...
T Consensus 416 ~~~r~----------------------nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l--- 470 (503)
T KOG0282|consen 416 PPFRL----------------------NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL--- 470 (503)
T ss_pred ccccc----------------------CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc---
Confidence 42110 0113566775 44667899999999999999999999999998777554
Q ss_pred CCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEE
Q 001109 701 SNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCD 754 (1155)
Q Consensus 701 ~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd 754 (1155)
..|..+++.+.|.+.. ...+++++.||.|++||
T Consensus 471 kah~~~ci~v~wHP~e---------------------~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 471 KAHDQPCIGVDWHPVE---------------------PSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccCCcceEEEEecCCC---------------------cceeEecccCceeEecC
Confidence 4599999999998532 44699999999999997
No 64
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=2.5e-22 Score=215.15 Aligned_cols=209 Identities=14% Similarity=0.181 Sum_probs=159.6
Q ss_pred hhHHHHHhhcCCCCCCCCcccccCCCcCCCCcceeeccCCCCCceEEEEcCCC-CEEEEEEcCCeEEEEccCCceEEEEc
Q 001109 2 FTKIFKKATKQPSPPRQNDEIKENLTSKDFDPRVTLHYGIPSTASILAFDHVQ-SLLAIGTQDGRIKVIGGDNIEGLLVS 80 (1155)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~~~~vs~lafsp~g-~lLAsgs~DG~I~vw~~~~~~~~~~~ 80 (1155)
|++||.|+|+.. ..||...|+|||=+|.. ..+|+|+.||.|+|||..+.+++..+
T Consensus 50 leR~fakPFv~~------------------------L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f 105 (433)
T KOG0268|consen 50 LERVFAKPFVGS------------------------LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF 105 (433)
T ss_pred HHHHhhccchhh------------------------ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee
Confidence 678888888874 26999999999999988 79999999999999999888777665
Q ss_pred -CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCce
Q 001109 81 -PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGK 159 (1155)
Q Consensus 81 -~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~ 159 (1155)
.|.+.|+.|.+.. ..++++++|.+|+.|-++. ..++++-+.+.+..+.-+..+..+++++++ |.||+..-+.
T Consensus 106 ~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-- 178 (433)
T KOG0268|consen 106 KAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-- 178 (433)
T ss_pred ecccCceeeEEecc--cceEEecCCcceeeeeccC-CcceeeeccccccccccccccccccccCce--eeecccccCC--
Confidence 4678999999998 5699999999999999876 477888888888888887777778877654 5678553321
Q ss_pred eeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccccccc
Q 001109 160 LIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNST 239 (1155)
Q Consensus 160 l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~ 239 (1155)
|.. .+.|. ...+.+ +.|+|...
T Consensus 179 --------Pv~--------smswG---------------------------------~Dti~s-----vkfNpvET---- 200 (433)
T KOG0268|consen 179 --------PVS--------SMSWG---------------------------------ADSISS-----VKFNPVET---- 200 (433)
T ss_pred --------ccc--------eeecC---------------------------------CCceeE-----EecCCCcc----
Confidence 111 11111 112233 88999765
Q ss_pred ccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEE
Q 001109 240 LGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLA 319 (1155)
Q Consensus 240 ~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~la 319 (1155)
..|+++.+|+.|.|+|++++.+++.... ...-..+||+ |.+-.++
T Consensus 201 ---sILas~~sDrsIvLyD~R~~~Pl~KVi~-------------------------------~mRTN~Iswn-PeafnF~ 245 (433)
T KOG0268|consen 201 ---SILASCASDRSIVLYDLRQASPLKKVIL-------------------------------TMRTNTICWN-PEAFNFV 245 (433)
T ss_pred ---hheeeeccCCceEEEecccCCccceeee-------------------------------eccccceecC-cccccee
Confidence 5788888999999999999987753110 2334688999 7888888
Q ss_pred EEEcCCcEEEEEcCC
Q 001109 320 VGYVDGDILLWNLRA 334 (1155)
Q Consensus 320 sg~~DG~I~lWd~~s 334 (1155)
+|..|-.++.+|++.
T Consensus 246 ~a~ED~nlY~~DmR~ 260 (433)
T KOG0268|consen 246 AANEDHNLYTYDMRN 260 (433)
T ss_pred eccccccceehhhhh
Confidence 888888888877753
No 65
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.88 E-value=1.6e-20 Score=202.68 Aligned_cols=149 Identities=15% Similarity=0.173 Sum_probs=123.7
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
.+++ ...+.++|+|.|||.||+.++... ..+. -+.++++++.+|...+||+|+.|..+|+||.+.+.
T Consensus 267 ~w~d-~~v~yS~SwDHTIk~WDletg~~~--~~~~----------~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 267 VWSD-ATVIYSVSWDHTIKVWDLETGGLK--STLT----------TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD 333 (423)
T ss_pred EEcC-CCceEeecccceEEEEEeecccce--eeee----------cCcceeEeecccccceeeecCCCCceeecCCCCCC
Confidence 3444 557899999999999999988732 2222 12489999999999999999999999999998753
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEecCCcc-EEEEeccCCCC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGA-RLAVGFECSQVAMLDISTFS-VLFITDSLSNS 703 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~-~LAsGs~Dg~V~lWDi~~~~-~l~~~~~~~~h 703 (1155)
. ....+.|.+|+..|.+|.|+|... +|++|+.||+++|||+++.. .+|.+ .+|
T Consensus 334 g----------------------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI---~~h 388 (423)
T KOG0313|consen 334 G----------------------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI---AGH 388 (423)
T ss_pred C----------------------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee---ccC
Confidence 2 223467899999999999999765 69999999999999999976 77765 469
Q ss_pred CCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC
Q 001109 704 NSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 704 ~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
.+.|.++.|. ++..|++|+.|.+|+|...
T Consensus 389 ~DKvl~vdW~-----------------------~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 389 NDKVLSVDWN-----------------------EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CceEEEEecc-----------------------CCceEEeccCcceEEEecc
Confidence 9999999996 4678999999999999753
No 66
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.6e-20 Score=186.57 Aligned_cols=155 Identities=14% Similarity=0.161 Sum_probs=121.5
Q ss_pred cCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccc
Q 001109 550 VERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEET 629 (1155)
Q Consensus 550 ~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~ 629 (1155)
++-++++|++|.+||+||+.-+.. +.++.....+ -+-...+|.+|+..|.|++||+|..|....+||+..+.
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~~--v~~l~~~~~~--~glessavaav~vdpsgrll~sg~~dssc~lydirg~r---- 264 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNSC--VNTLDNDFHD--GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR---- 264 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccce--eeeccCcccC--CCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc----
Confidence 345899999999999999976652 2333221111 01133589999999999999999999999999998864
Q ss_pred eeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEE--eccCCCCCCCe
Q 001109 630 LNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFI--TDSLSNSNSPV 707 (1155)
Q Consensus 630 ~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~--~~~~~~h~~~V 707 (1155)
.++.|..|+..|.||.|||...++.+++.|..|+|-|++.. +.++ ..+...|.+.+
T Consensus 265 ---------------------~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~vv~ehkdk~ 322 (350)
T KOG0641|consen 265 ---------------------MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIMVVAEHKDKA 322 (350)
T ss_pred ---------------------eeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceEEEEeccCce
Confidence 24678899999999999999999999999999999999863 1111 11234699999
Q ss_pred eEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECC
Q 001109 708 LYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDST 756 (1155)
Q Consensus 708 ~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~ 756 (1155)
+.+.|. |..--+++.+.|.++.+|-+.
T Consensus 323 i~~rwh----------------------~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 323 IQCRWH----------------------PQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEec----------------------CccceeeeccCcceEEEeccC
Confidence 999998 555668899999999999754
No 67
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.3e-20 Score=189.72 Aligned_cols=120 Identities=15% Similarity=0.074 Sum_probs=95.0
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceee
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNL 632 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~ 632 (1155)
.+++||.||++|.+|+..+++..-| -|| ||+++.|++|+..+.+++.|+++++.|-.+++..
T Consensus 157 eIvaGS~DGtvRtydiR~G~l~sDy-----------~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL----- 218 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKGTLSSDY-----------FGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL----- 218 (307)
T ss_pred EEEeeccCCcEEEEEeecceeehhh-----------cCC--cceeEEecCCCCEEEEeeccceeeecccchhHHH-----
Confidence 5889999999999999988743111 133 9999999999999999999999999998876431
Q ss_pred eccCCceEEEecCCCCCceeEEeecCCCCeE--EEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCC-eeE
Q 001109 633 VTETGKEVHILPGGDGPQCKALFSVLNSPIC--NLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSP-VLY 709 (1155)
Q Consensus 633 v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vt--slafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~-V~s 709 (1155)
..+.+|...=. ..+++....++++|++||.|.+||+.+..++..... ++.+ |++
T Consensus 219 --------------------~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~---~~~v~v~d 275 (307)
T KOG0316|consen 219 --------------------KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV---VSTVIVTD 275 (307)
T ss_pred --------------------HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc---CCceeEEe
Confidence 34456655332 335677778999999999999999999988876544 6666 889
Q ss_pred EEEe
Q 001109 710 LAVK 713 (1155)
Q Consensus 710 lafs 713 (1155)
|+|.
T Consensus 276 l~~h 279 (307)
T KOG0316|consen 276 LSCH 279 (307)
T ss_pred eecc
Confidence 9998
No 68
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.87 E-value=5.6e-21 Score=200.52 Aligned_cols=210 Identities=18% Similarity=0.242 Sum_probs=163.9
Q ss_pred ccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCc------------------eEEE-EcCCCCCEEEEEEEcCCcEE
Q 001109 38 HYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNI------------------EGLL-VSPKQLAFKHLEFLQNQGFL 98 (1155)
Q Consensus 38 ~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~------------------~~~~-~~~~~~~V~~l~Fs~dg~~L 98 (1155)
...|.+.+.+.+|+|||.++|+|+.|..|||+|.... -++. .+.|...|..|.|.|-...|
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence 3578889999999999999999999999999986521 0122 23567899999999999999
Q ss_pred EEEecCCeEEEEECCCCce---eeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeee
Q 001109 99 VSISSGNEIQLWDLEARRI---TSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVF 175 (1155)
Q Consensus 99 vS~s~Dg~I~vWDl~t~~~---~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~ 175 (1155)
++++.|++|+++|...... ...++.-..|.+++|+|.|.+|++|++.-+++++++.+-+.-
T Consensus 188 iS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf---------------- 251 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF---------------- 251 (430)
T ss_pred EeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEe----------------
Confidence 9999999999999875433 334445578999999999999999999999998765542210
Q ss_pred ceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEE
Q 001109 176 NHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLII 255 (1155)
Q Consensus 176 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~ 255 (1155)
+..+||+- +...| +++.+++. + ++.++|+.||.|+
T Consensus 252 ----vsanPd~q----------------------------ht~ai-----~~V~Ys~t--~------~lYvTaSkDG~Ik 286 (430)
T KOG0640|consen 252 ----VSANPDDQ----------------------------HTGAI-----TQVRYSST--G------SLYVTASKDGAIK 286 (430)
T ss_pred ----eecCcccc----------------------------cccce-----eEEEecCC--c------cEEEEeccCCcEE
Confidence 01123321 23344 44999987 4 6799999999999
Q ss_pred EEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 256 LWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 256 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
|||--.++++...+. + +...+|+++.|. .+|++|++.+.|..+++|.+.++
T Consensus 287 lwDGVS~rCv~t~~~----------------A------------H~gsevcSa~Ft-kn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 287 LWDGVSNRCVRTIGN----------------A------------HGGSEVCSAVFT-KNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred eeccccHHHHHHHHh----------------h------------cCCceeeeEEEc-cCCeEEeecCCcceeeeeeecCC
Confidence 999888888764221 0 135789999999 99999999999999999999887
Q ss_pred CC
Q 001109 336 AS 337 (1155)
Q Consensus 336 ~~ 337 (1155)
..
T Consensus 338 R~ 339 (430)
T KOG0640|consen 338 RM 339 (430)
T ss_pred ce
Confidence 43
No 69
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.87 E-value=2.4e-20 Score=201.40 Aligned_cols=220 Identities=15% Similarity=0.138 Sum_probs=156.0
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEc-C--CcEEEEEecCCeEEEEECCCCc
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQ-N--QGFLVSISSGNEIQLWDLEARR 116 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~-d--g~~LvS~s~Dg~I~vWDl~t~~ 116 (1155)
-|+.-|+++... ++++.+|+.||.++||+..+.......+|.++|+.+++.- | ...+++++.|.++++|-++.++
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 466677777776 6899999999999999999887777778899999777743 3 2359999999999999998876
Q ss_pred eee----eecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCc-eeeccceeccCCceeeeceeEeeEeccccccc
Q 001109 117 ITS----TLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEG-KLIHSPYYVPKDVIEVFNHLLLEFCPNHIQRE 190 (1155)
Q Consensus 117 ~~~----~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~-~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~ 190 (1155)
..- .-++| ..|-++++.+++..+++|+-|.++.+|+...+.. .+. .+.. .++.....
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E----~~s~-------------~rrk~~~~ 243 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELE----SSSN-------------RRRKKQKR 243 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcccccc----ccch-------------hhhhhhhh
Confidence 432 22356 7899999999999999999999999998333211 000 0000 00000000
Q ss_pred ccccccccceeeecCCCCCCCccc-ccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEec
Q 001109 191 KGKAAFNASLLFYCMPPDESGFID-FIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRG 269 (1155)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~ 269 (1155)
.. .. -...+-..+ .|.. .|.+|.|++. ..+++++.|.+|+.||+.+++....+.
T Consensus 244 ~~-~~----------~~r~P~vtl~GHt~-----~Vs~V~w~d~---------~v~yS~SwDHTIk~WDletg~~~~~~~ 298 (423)
T KOG0313|consen 244 EK-EG----------GTRTPLVTLEGHTE-----PVSSVVWSDA---------TVIYSVSWDHTIKVWDLETGGLKSTLT 298 (423)
T ss_pred hh-cc----------cccCceEEeccccc-----ceeeEEEcCC---------CceEeecccceEEEEEeecccceeeee
Confidence 00 00 000000000 1223 4555999883 469999999999999999998876532
Q ss_pred ccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 270 SKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
. .+.+.|+..+ |...+||+|+.|..|++||.+++
T Consensus 299 ~-------------------------------~ksl~~i~~~-~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 299 T-------------------------------NKSLNCISYS-PLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred c-------------------------------CcceeEeecc-cccceeeecCCCCceeecCCCCC
Confidence 1 5678999999 89999999999999999998764
No 70
>PTZ00421 coronin; Provisional
Probab=99.86 E-value=2.1e-19 Score=215.26 Aligned_cols=168 Identities=12% Similarity=0.118 Sum_probs=122.9
Q ss_pred cEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcccccee
Q 001109 552 RLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLN 631 (1155)
Q Consensus 552 ~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~ 631 (1155)
++|+||+.|++|++||+..+.. +..+. +|...|++++|+|+|.+||+|+.||+|++||+..+..
T Consensus 139 ~iLaSgs~DgtVrIWDl~tg~~--~~~l~---------~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~----- 202 (493)
T PTZ00421 139 NVLASAGADMVVNVWDVERGKA--VEVIK---------CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI----- 202 (493)
T ss_pred CEEEEEeCCCEEEEEECCCCeE--EEEEc---------CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----
Confidence 4899999999999999988762 23332 6778999999999999999999999999999987432
Q ss_pred eeccCCceEEEecCCCCCceeEEeecCCCC-eEEEEEcCCCCEEEEEe----CCCcEEEEecCCccEEEEeccCCCCCCC
Q 001109 632 LVTETGKEVHILPGGDGPQCKALFSVLNSP-ICNLKFSNFGARLAVGF----ECSQVAMLDISTFSVLFITDSLSNSNSP 706 (1155)
Q Consensus 632 ~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~-VtslafSpdg~~LAsGs----~Dg~V~lWDi~~~~~l~~~~~~~~h~~~ 706 (1155)
+..+.+|.+. +..+.|.+++..+++++ .|+.|+|||+++......... ..+...
T Consensus 203 --------------------v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~-~d~~~~ 261 (493)
T PTZ00421 203 --------------------VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD-LDQSSA 261 (493)
T ss_pred --------------------EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec-cCCCCc
Confidence 2345677764 45678899887776543 489999999987543222111 123344
Q ss_pred eeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeC-CceEEEEECCCCceeeeeecccC-CCceEEEEE
Q 001109 707 VLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTK-DAHIVVCDSTTGHILFSRSIHHQ-ESNAIYMCI 778 (1155)
Q Consensus 707 V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~-Dg~I~vwd~~tG~~l~~~~~~~~-~~~al~~~~ 778 (1155)
+....|+ +|+++|+++++ |++|++||+.+|+++........ +.+.+++..
T Consensus 262 ~~~~~~d----------------------~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 262 LFIPFFD----------------------EDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred eEEEEEc----------------------CCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 5555666 88999999885 99999999999988766544333 555555443
No 71
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.6e-18 Score=197.64 Aligned_cols=429 Identities=13% Similarity=0.126 Sum_probs=251.8
Q ss_pred CCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCc-eeeeecCC--CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCce
Q 001109 83 QLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARR-ITSTLPWE--SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGK 159 (1155)
Q Consensus 83 ~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~-~~~~l~~~--~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~ 159 (1155)
..+|.+++|+...+.|+.+-.||.|.+||+...= +...+.++ ..|.+++|.+ +..|++.+-+|.|.-|++-...
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk-- 101 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLK-- 101 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCc--
Confidence 4589999999999999999999999999998753 33344444 7899999995 4556677788988777544322
Q ss_pred eeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccccccc
Q 001109 160 LIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNST 239 (1155)
Q Consensus 160 l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~ 239 (1155)
.. |.+.. ..+.+++ ++.+|..
T Consensus 102 ~~---~~~d~----------------------------------------------~gg~IWs-----iai~p~~----- 122 (691)
T KOG2048|consen 102 QK---YNIDS----------------------------------------------NGGAIWS-----IAINPEN----- 122 (691)
T ss_pred ee---EEecC----------------------------------------------CCcceeE-----EEeCCcc-----
Confidence 11 11100 1345556 9999975
Q ss_pred ccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEE
Q 001109 240 LGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLA 319 (1155)
Q Consensus 240 ~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~la 319 (1155)
+.+++|++||.+.+.+...+++...+.. .. ..+.|.++.|. ++|..||
T Consensus 123 ---~~l~IgcddGvl~~~s~~p~~I~~~r~l-----~r-----------------------q~sRvLslsw~-~~~~~i~ 170 (691)
T KOG2048|consen 123 ---TILAIGCDDGVLYDFSIGPDKITYKRSL-----MR-----------------------QKSRVLSLSWN-PTGTKIA 170 (691)
T ss_pred ---ceEEeecCCceEEEEecCCceEEEEeec-----cc-----------------------ccceEEEEEec-CCccEEE
Confidence 5699999999888888888887765432 11 26789999999 9999999
Q ss_pred EEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEE
Q 001109 320 VGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTML 399 (1155)
Q Consensus 320 sg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl 399 (1155)
+|+.||.|++||..++.... +..+++.....+ +..-
T Consensus 171 ~Gs~Dg~Iriwd~~~~~t~~----------~~~~~~d~l~k~--------------------------------~~~i-- 206 (691)
T KOG2048|consen 171 GGSIDGVIRIWDVKSGQTLH----------IITMQLDRLSKR--------------------------------EPTI-- 206 (691)
T ss_pred ecccCceEEEEEcCCCceEE----------EeeecccccccC--------------------------------CceE--
Confidence 99999999999998764311 111111110000 1111
Q ss_pred EccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCc
Q 001109 400 YLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPM 479 (1155)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~ 479 (1155)
++.+.++.++ .++.+.+.|.+.+||-.. ..+..
T Consensus 207 ------------------------VWSv~~Lrd~-------tI~sgDS~G~V~FWd~~~----------------gTLiq 239 (691)
T KOG2048|consen 207 ------------------------VWSVLFLRDS-------TIASGDSAGTVTFWDSIF----------------GTLIQ 239 (691)
T ss_pred ------------------------EEEEEEeecC-------cEEEecCCceEEEEcccC----------------cchhh
Confidence 1222333222 566777789999999542 22223
Q ss_pred ccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEEC
Q 001109 480 LIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYR 559 (1155)
Q Consensus 480 ~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~ 559 (1155)
....|...|.|+ +..++++.+++++.
T Consensus 240 S~~~h~adVl~L------------------------------------------------------av~~~~d~vfsaGv 265 (691)
T KOG2048|consen 240 SHSCHDADVLAL------------------------------------------------------AVADNEDRVFSAGV 265 (691)
T ss_pred hhhhhhcceeEE------------------------------------------------------EEcCCCCeEEEccC
Confidence 344455554443 33455567888888
Q ss_pred CCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccc---eee----
Q 001109 560 DGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEET---LNL---- 632 (1155)
Q Consensus 560 DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~---~~~---- 632 (1155)
|+.|--+...+..-. ++... ....|...|.+++..++ .|.+|+.|+++.+-.....+..-. ..+
T Consensus 266 d~~ii~~~~~~~~~~--wv~~~-----~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~ 336 (691)
T KOG2048|consen 266 DPKIIQYSLTTNKSE--WVINS-----RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASD 336 (691)
T ss_pred CCceEEEEecCCccc--eeeec-----cccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccc
Confidence 998877766555311 11110 12367778999999888 899999999998866554221100 000
Q ss_pred -eccC----------CceEEEecCCCC-------Cc-eeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccE
Q 001109 633 -VTET----------GKEVHILPGGDG-------PQ-CKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSV 693 (1155)
Q Consensus 633 -v~~~----------~~~~~~~~~~~g-------~~-~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~ 693 (1155)
+... +..+.++.-|.+ ++ ....+..-...|+|-|.||||+++|.+.-. .++|+.++---.
T Consensus 337 ~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~ 415 (691)
T KOG2048|consen 337 RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPN 415 (691)
T ss_pred eeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcc
Confidence 0000 111122221211 11 111122234569999999999999999832 244444432000
Q ss_pred EEEecc--CCCCCCCeeEEEEee-------cC-CCCcc----ccCCCC-------------CCCCCCCCCCCcEEEEEeC
Q 001109 694 LFITDS--LSNSNSPVLYLAVKS-------LS-DTSNL----TISPKD-------------SDINSSNDTKKETLFFMTK 746 (1155)
Q Consensus 694 l~~~~~--~~~h~~~V~slafs~-------~~-~~~~~----~~~~~~-------------~~~~~~~~pd~~~L~s~s~ 746 (1155)
+....+ ..-..-++..+.|+- ++ +..++ ...|+. ..+.....|||++|++.+.
T Consensus 416 vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t 495 (691)
T KOG2048|consen 416 VKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST 495 (691)
T ss_pred eeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec
Confidence 000000 000000111122210 00 00000 111111 1122455689999999999
Q ss_pred CceEEEEECCCCce
Q 001109 747 DAHIVVCDSTTGHI 760 (1155)
Q Consensus 747 Dg~I~vwd~~tG~~ 760 (1155)
+|.|.+|++++++.
T Consensus 496 ~g~I~v~nl~~~~~ 509 (691)
T KOG2048|consen 496 RGQIFVYNLETLES 509 (691)
T ss_pred cceEEEEEccccee
Confidence 99999999998664
No 72
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.9e-20 Score=189.00 Aligned_cols=262 Identities=17% Similarity=0.193 Sum_probs=189.7
Q ss_pred ccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCc
Q 001109 301 VEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRG 380 (1155)
Q Consensus 301 ~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~ 380 (1155)
+++.|.++.|+ -||++.++++.|.+|++||+-.+..... +.+|...|..++-+
T Consensus 16 ~qgaV~avryN-~dGnY~ltcGsdrtvrLWNp~rg~likt----------------YsghG~EVlD~~~s---------- 68 (307)
T KOG0316|consen 16 AQGAVRAVRYN-VDGNYCLTCGSDRTVRLWNPLRGALIKT----------------YSGHGHEVLDAALS---------- 68 (307)
T ss_pred cccceEEEEEc-cCCCEEEEcCCCceEEeecccccceeee----------------ecCCCceeeecccc----------
Confidence 47889999999 9999999999999999999877654332 33444444333211
Q ss_pred eEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCC
Q 001109 381 QLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFS 460 (1155)
Q Consensus 381 ~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~ 460 (1155)
.|...++....+..+.+||..
T Consensus 69 --------------------------------------------------------~Dnskf~s~GgDk~v~vwDV~--- 89 (307)
T KOG0316|consen 69 --------------------------------------------------------SDNSKFASCGGDKAVQVWDVN--- 89 (307)
T ss_pred --------------------------------------------------------ccccccccCCCCceEEEEEcc---
Confidence 122234444555667788864
Q ss_pred CcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCC
Q 001109 461 PKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPC 540 (1155)
Q Consensus 461 ~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~ 540 (1155)
+.+....+.+|...|++++|.
T Consensus 90 -------------TGkv~Rr~rgH~aqVNtV~fN---------------------------------------------- 110 (307)
T KOG0316|consen 90 -------------TGKVDRRFRGHLAQVNTVRFN---------------------------------------------- 110 (307)
T ss_pred -------------cCeeeeecccccceeeEEEec----------------------------------------------
Confidence 333444566677777776662
Q ss_pred cccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEE
Q 001109 541 QLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYN 620 (1155)
Q Consensus 541 ~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd 620 (1155)
.+..++++|+.|.+||+||.......|+.++.. ....|.++... +..++.|+.||++|.||
T Consensus 111 --------eesSVv~SgsfD~s~r~wDCRS~s~ePiQilde---------a~D~V~Si~v~--~heIvaGS~DGtvRtyd 171 (307)
T KOG0316|consen 111 --------EESSVVASGSFDSSVRLWDCRSRSFEPIQILDE---------AKDGVSSIDVA--EHEIVAGSVDGTVRTYD 171 (307)
T ss_pred --------CcceEEEeccccceeEEEEcccCCCCccchhhh---------hcCceeEEEec--ccEEEeeccCCcEEEEE
Confidence 233379999999999999999888777766642 33478888765 46789999999999999
Q ss_pred eccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccC
Q 001109 621 LIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSL 700 (1155)
Q Consensus 621 ~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~ 700 (1155)
++.+... . .-...+|+|+.||+||+.+.+|+.|++++|.|-.+++++.. .
T Consensus 172 iR~G~l~-------------------------s--Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s---Y 221 (307)
T KOG0316|consen 172 IRKGTLS-------------------------S--DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS---Y 221 (307)
T ss_pred eecceee-------------------------h--hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHH---h
Confidence 9886421 0 11345899999999999999999999999999999998743 3
Q ss_pred CCCCCCeeEE--EEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeecccC-CCceEEEE
Q 001109 701 SNSNSPVLYL--AVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSIHHQ-ESNAIYMC 777 (1155)
Q Consensus 701 ~~h~~~V~sl--afs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~~~-~~~al~~~ 777 (1155)
.||.+.=..+ ++. .....+++||+||.|++||+..+.++..++++.. ....|.+|
T Consensus 222 kGhkn~eykldc~l~----------------------qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~h 279 (307)
T KOG0316|consen 222 KGHKNMEYKLDCCLN----------------------QSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCH 279 (307)
T ss_pred cccccceeeeeeeec----------------------ccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecc
Confidence 5677653333 333 2356799999999999999999999988877665 34445544
Q ss_pred E
Q 001109 778 I 778 (1155)
Q Consensus 778 ~ 778 (1155)
.
T Consensus 280 p 280 (307)
T KOG0316|consen 280 P 280 (307)
T ss_pred c
Confidence 3
No 73
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.86 E-value=4.2e-21 Score=209.01 Aligned_cols=145 Identities=19% Similarity=0.197 Sum_probs=113.1
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceee
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNL 632 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~ 632 (1155)
.+++|+.|++||+||+..+... +... .+ +.|++|..++++..|.+.+.|.++.+.|+.+....
T Consensus 314 ~~~SgH~DkkvRfwD~Rs~~~~--~sv~---------~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~----- 376 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIRSADKT--RSVP---------LG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIR----- 376 (459)
T ss_pred eeeecccccceEEEeccCCcee--eEee---------cC-cceeeEeeccCCeEEeeecCCCceeeeecccccEE-----
Confidence 4788999999999999887732 2221 12 28999999999999999999999999999875321
Q ss_pred eccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEE
Q 001109 633 VTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAV 712 (1155)
Q Consensus 633 v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slaf 712 (1155)
..-..+|+.| + ...+.+.|||++.|+|+||.||.|+||++.++++...... ++....|++++|
T Consensus 377 ---------~~~sA~g~k~-----a--sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-s~s~~aI~s~~W 439 (459)
T KOG0288|consen 377 ---------QTFSAEGFKC-----A--SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL-STSNAAITSLSW 439 (459)
T ss_pred ---------EEeecccccc-----c--cccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc-CCCCcceEEEEE
Confidence 1111222222 2 2388999999999999999999999999999998765532 223337999999
Q ss_pred eecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEE
Q 001109 713 KSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVC 753 (1155)
Q Consensus 713 s~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vw 753 (1155)
. |-|..|++++++..+.+|
T Consensus 440 ~----------------------~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 440 N----------------------PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred c----------------------CCCchhhcccCCcceEec
Confidence 8 667889999999999999
No 74
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=2.5e-19 Score=185.06 Aligned_cols=107 Identities=23% Similarity=0.315 Sum_probs=95.4
Q ss_pred CCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcC
Q 001109 590 TESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSN 669 (1155)
Q Consensus 590 gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSp 669 (1155)
.|+....||.|+|+|+++|+|+.|..|-+||++. ..|...+..|.-+|..|.||.
T Consensus 187 AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E-------------------------LiC~R~isRldwpVRTlSFS~ 241 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRYFATGSADALVSLWDVDE-------------------------LICERCISRLDWPVRTLSFSH 241 (313)
T ss_pred cCCcceEEEEECCCCceEeeccccceeeccChhH-------------------------hhhheeeccccCceEEEEecc
Confidence 6777889999999999999999999999999986 245677888999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCC
Q 001109 670 FGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKD 747 (1155)
Q Consensus 670 dg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~D 747 (1155)
||++||+||+|..|-|=++++|..+++++ +.+|-.+++|. |...+|+-+..|
T Consensus 242 dg~~lASaSEDh~IDIA~vetGd~~~eI~----~~~~t~tVAWH----------------------Pk~~LLAyA~dd 293 (313)
T KOG1407|consen 242 DGRMLASASEDHFIDIAEVETGDRVWEIP----CEGPTFTVAWH----------------------PKRPLLAYACDD 293 (313)
T ss_pred CcceeeccCccceEEeEecccCCeEEEee----ccCCceeEEec----------------------CCCceeeEEecC
Confidence 99999999999999999999999999876 57889999998 666778777655
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.85 E-value=3.3e-19 Score=184.57 Aligned_cols=166 Identities=15% Similarity=0.232 Sum_probs=125.1
Q ss_pred CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCce
Q 001109 81 PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGK 159 (1155)
Q Consensus 81 ~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~ 159 (1155)
.|+.|++.+.|+.+|..|++++.|.++.||--..|+.+.++.+| +.|.|++++.+.++|++|+.|.++++|+... |+
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t--Gk 85 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET--GK 85 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC--Cc
Confidence 57889999999999999999999999999999999999999998 8999999999999999999999999996655 33
Q ss_pred eeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccccccc
Q 001109 160 LIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNST 239 (1155)
Q Consensus 160 l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~ 239 (1155)
.. +.++ ...+|.. +.|++++
T Consensus 86 ~l---a~~k-----------------------------------------------~~~~Vk~-----~~F~~~g----- 105 (327)
T KOG0643|consen 86 QL---ATWK-----------------------------------------------TNSPVKR-----VDFSFGG----- 105 (327)
T ss_pred EE---EEee-----------------------------------------------cCCeeEE-----EeeccCC-----
Confidence 22 1111 1233334 8888873
Q ss_pred ccccEEEEEEcC-----CeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecC
Q 001109 240 LGFSQLLLVYAN-----GLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASND 314 (1155)
Q Consensus 240 ~~~~~llsg~~d-----G~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pd 314 (1155)
++++...++ +.|.++|++....... ..+.-++. + -+++.++++-|. |-
T Consensus 106 ---n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~--s~ep~~kI--~-------------------t~~skit~a~Wg-~l 158 (327)
T KOG0643|consen 106 ---NLILASTDKQMGYTCFVSVFDIRDDSSDID--SEEPYLKI--P-------------------TPDSKITSALWG-PL 158 (327)
T ss_pred ---cEEEEEehhhcCcceEEEEEEccCChhhhc--ccCceEEe--c-------------------CCccceeeeeec-cc
Confidence 455555543 6788888874331100 00000000 0 025789999999 99
Q ss_pred CCeEEEEEcCCcEEEEEcCCC
Q 001109 315 GSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 315 G~~lasg~~DG~I~lWd~~s~ 335 (1155)
+..|++|+.||.|..||..++
T Consensus 159 ~~~ii~Ghe~G~is~~da~~g 179 (327)
T KOG0643|consen 159 GETIIAGHEDGSISIYDARTG 179 (327)
T ss_pred CCEEEEecCCCcEEEEEcccC
Confidence 999999999999999998765
No 76
>PTZ00420 coronin; Provisional
Probab=99.85 E-value=4.4e-19 Score=213.36 Aligned_cols=148 Identities=11% Similarity=0.082 Sum_probs=108.4
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceee
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNL 632 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~ 632 (1155)
+|+||+.||+|++||+..+.. +..+. |...|.+++|+|+|.+|++++.|+.|+|||+..+..
T Consensus 140 iLaSgS~DgtIrIWDl~tg~~--~~~i~----------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~------ 201 (568)
T PTZ00420 140 IMCSSGFDSFVNIWDIENEKR--AFQIN----------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI------ 201 (568)
T ss_pred EEEEEeCCCeEEEEECCCCcE--EEEEe----------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE------
Confidence 578999999999999988763 22221 335799999999999999999999999999987532
Q ss_pred eccCCceEEEecCCCCCceeEEeecCCCCeE-----EEEEcCCCCEEEEEeCCC----cEEEEecCC-ccEEEEeccCCC
Q 001109 633 VTETGKEVHILPGGDGPQCKALFSVLNSPIC-----NLKFSNFGARLAVGFECS----QVAMLDIST-FSVLFITDSLSN 702 (1155)
Q Consensus 633 v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vt-----slafSpdg~~LAsGs~Dg----~V~lWDi~~-~~~l~~~~~~~~ 702 (1155)
+..+.+|.+.+. ...|++++.+|++++.|+ +|+|||++. ...+.... +..
T Consensus 202 -------------------i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~-ld~ 261 (568)
T PTZ00420 202 -------------------ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS-IDN 261 (568)
T ss_pred -------------------EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE-ecC
Confidence 245677877543 345678999999877774 799999985 44444332 122
Q ss_pred CCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCce
Q 001109 703 SNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHI 760 (1155)
Q Consensus 703 h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~ 760 (1155)
+.+.+...... ++|.++++|+.|++|++|+..+|.+
T Consensus 262 ~~~~L~p~~D~----------------------~tg~l~lsGkGD~tIr~~e~~~~~~ 297 (568)
T PTZ00420 262 ASAPLIPHYDE----------------------STGLIYLIGKGDGNCRYYQHSLGSI 297 (568)
T ss_pred CccceEEeeeC----------------------CCCCEEEEEECCCeEEEEEccCCcE
Confidence 33332222222 5688999999999999999988754
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.4e-19 Score=201.50 Aligned_cols=299 Identities=17% Similarity=0.223 Sum_probs=206.1
Q ss_pred EEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeee-cCCCceeEEEEecCCCEEEEEeC
Q 001109 66 IKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTL-PWESNITAFSVIFGTSYMYIGDE 144 (1155)
Q Consensus 66 I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l-~~~~~Vtsva~spd~~~l~~G~~ 144 (1155)
++-|.......+ .....+|.+|+|+|...+=+++...-.+.+++..+.....++ ++...|.++.|-.||++|++|++
T Consensus 11 ~~~w~~~~~~~~--~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~ 88 (487)
T KOG0310|consen 11 IRYWRQETFPPV--HKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDE 88 (487)
T ss_pred chhhhhhccccc--ccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCC
Confidence 445654432222 234568999999997665444444678999999988877765 46688999999999999999999
Q ss_pred CCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccce
Q 001109 145 YGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFF 224 (1155)
Q Consensus 145 dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 224 (1155)
.|.|+|+++.. +. +. +.+++ +..++..
T Consensus 89 sG~V~vfD~k~--r~-iL-------------------------R~~~a-----------------------h~apv~~-- 115 (487)
T KOG0310|consen 89 SGHVKVFDMKS--RV-IL-------------------------RQLYA-----------------------HQAPVHV-- 115 (487)
T ss_pred cCcEEEecccc--HH-HH-------------------------HHHhh-----------------------ccCceeE--
Confidence 99999986332 11 10 11111 1233333
Q ss_pred eeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCC
Q 001109 225 VEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKE 304 (1155)
Q Consensus 225 v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1155)
+.|+|.+. ..+++|+.|+.+++||+.+..+.... . +|+..
T Consensus 116 ---~~f~~~d~-------t~l~s~sDd~v~k~~d~s~a~v~~~l-------~-----------------------~htDY 155 (487)
T KOG0310|consen 116 ---TKFSPQDN-------TMLVSGSDDKVVKYWDLSTAYVQAEL-------S-----------------------GHTDY 155 (487)
T ss_pred ---EEecccCC-------eEEEecCCCceEEEEEcCCcEEEEEe-------c-----------------------CCcce
Confidence 88999865 68999999999999999988863221 1 26889
Q ss_pred ccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEE
Q 001109 305 ISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFV 384 (1155)
Q Consensus 305 V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv 384 (1155)
|.|.+|++.++..++||+.||.||+||+++... +|.
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-------------------------~v~------------------- 191 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-------------------------RVV------------------- 191 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCCc-------------------------eeE-------------------
Confidence 999999966788999999999999999986421 011
Q ss_pred ecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCccc
Q 001109 385 FGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKS 464 (1155)
Q Consensus 385 ~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~ 464 (1155)
.+.+..++.+++++|+++ +++...+..+++||...
T Consensus 192 --------------------------------elnhg~pVe~vl~lpsgs-------~iasAgGn~vkVWDl~~------ 226 (487)
T KOG0310|consen 192 --------------------------------ELNHGCPVESVLALPSGS-------LIASAGGNSVKVWDLTT------ 226 (487)
T ss_pred --------------------------------EecCCCceeeEEEcCCCC-------EEEEcCCCeEEEEEecC------
Confidence 112222344445555442 34444455788888642
Q ss_pred ccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccc
Q 001109 465 QEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHD 544 (1155)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l 544 (1155)
..+.+....-|...|||+.+..
T Consensus 227 ---------G~qll~~~~~H~KtVTcL~l~s------------------------------------------------- 248 (487)
T KOG0310|consen 227 ---------GGQLLTSMFNHNKTVTCLRLAS------------------------------------------------- 248 (487)
T ss_pred ---------CceehhhhhcccceEEEEEeec-------------------------------------------------
Confidence 1223333434888999987742
Q ss_pred cccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEecc
Q 001109 545 AEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIK 623 (1155)
Q Consensus 545 ~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~ 623 (1155)
++..|+||+-||.||++|.+.-. .++.+. -.+||.+++.+||++.+++|..+|.|-+-+...
T Consensus 249 -----~~~rLlS~sLD~~VKVfd~t~~K--vv~s~~----------~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 249 -----DSTRLLSGSLDRHVKVFDTTNYK--VVHSWK----------YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred -----CCceEeecccccceEEEEccceE--EEEeee----------cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 22368899999999999976554 334432 235999999999999999999999987764433
No 78
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.85 E-value=5.4e-20 Score=204.57 Aligned_cols=167 Identities=15% Similarity=0.151 Sum_probs=123.5
Q ss_pred ccCCc-CcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccC
Q 001109 546 EDYLV-ERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKS 624 (1155)
Q Consensus 546 ~~s~~-~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~ 624 (1155)
.++|. .+.++|++.||++|+||+.... ..+.++++...+ +-+.+++..+|+|||+.+|.|..||.|.+|+....
T Consensus 275 ~whP~~k~~FlT~s~DgtlRiWdv~~~k-~q~qVik~k~~~----g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~ 349 (641)
T KOG0772|consen 275 CWHPDNKEEFLTCSYDGTLRIWDVNNTK-SQLQVIKTKPAG----GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSR 349 (641)
T ss_pred ccccCcccceEEecCCCcEEEEecCCch-hheeEEeeccCC----CcccCceeeecCCCcchhhhcccCCceeeeecCCc
Confidence 34444 3478999999999999998764 233455543322 56679999999999999999999999999998442
Q ss_pred ccccceeeeccCCceEEEecCCCCCceeEEeecCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEecCCcc-EEEEeccCC
Q 001109 625 SNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNS--PICNLKFSNFGARLAVGFECSQVAMLDISTFS-VLFITDSLS 701 (1155)
Q Consensus 625 ~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~--~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~-~l~~~~~~~ 701 (1155)
..- .. .+ +-..|.. .|+||+||+||++|++-+.|++++|||+++.. +|+. ..
T Consensus 350 ~v~-p~-------------------~~--vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~---~t 404 (641)
T KOG0772|consen 350 TVR-PV-------------------MK--VKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV---RT 404 (641)
T ss_pred ccc-cc-------------------eE--eeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh---hc
Confidence 110 00 01 1246776 89999999999999999999999999998853 3332 12
Q ss_pred C--CCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeC------CceEEEEECCCCceeeee
Q 001109 702 N--SNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTK------DAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 702 ~--h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~------Dg~I~vwd~~tG~~l~~~ 764 (1155)
+ ...+-+.++|| ||.++|++|+. -|+++++|..|=+.+...
T Consensus 405 gL~t~~~~tdc~FS----------------------Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 405 GLPTPFPGTDCCFS----------------------PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred CCCccCCCCccccC----------------------CCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 2 23456788999 89999999865 578999998776655444
No 79
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.6e-20 Score=197.50 Aligned_cols=168 Identities=16% Similarity=0.141 Sum_probs=143.9
Q ss_pred ccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEecc
Q 001109 544 DAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIK 623 (1155)
Q Consensus 544 l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~ 623 (1155)
++.|+|||++|+||+.||.|.+||..++.++.- ++-+..+ .+--+..+|.|+.||.|..+||+|+.||.|++|.+.+
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKD--LkYQAqd-~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKD--LKYQAQD-NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET 294 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhh--hhhhhhc-ceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence 458999999999999999999999999875321 1111111 0113456999999999999999999999999999998
Q ss_pred CccccceeeeccCCceEEEecCCCCCceeEEee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCC
Q 001109 624 SSNEETLNLVTETGKEVHILPGGDGPQCKALFS-VLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSN 702 (1155)
Q Consensus 624 ~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~-~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~ 702 (1155)
+. |+..|. .|+..|+|+.||.|+..+.+++.|.+|+|--+.+|+++..+ .|
T Consensus 295 G~-------------------------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf---rG 346 (508)
T KOG0275|consen 295 GQ-------------------------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF---RG 346 (508)
T ss_pred ch-------------------------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh---cC
Confidence 64 344555 79999999999999999999999999999999999998654 57
Q ss_pred CCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeee
Q 001109 703 SNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 703 h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
|++-|....|. +||..++++|.||+|+||+..|++|+.++
T Consensus 347 HsSyvn~a~ft----------------------~dG~~iisaSsDgtvkvW~~KtteC~~Tf 386 (508)
T KOG0275|consen 347 HSSYVNEATFT----------------------DDGHHIISASSDGTVKVWHGKTTECLSTF 386 (508)
T ss_pred ccccccceEEc----------------------CCCCeEEEecCCccEEEecCcchhhhhhc
Confidence 99999999998 88999999999999999999999999987
No 80
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=5.5e-19 Score=195.30 Aligned_cols=203 Identities=16% Similarity=0.210 Sum_probs=155.8
Q ss_pred eeeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEE---EEc----------------CCCCCEEEEEEEcCC
Q 001109 35 VTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGL---LVS----------------PKQLAFKHLEFLQNQ 95 (1155)
Q Consensus 35 ~~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~---~~~----------------~~~~~V~~l~Fs~dg 95 (1155)
...+-.|.-++.+++++|++++..+++.||+|.=|+..+.... ... .|...|.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 3444688899999999999999999999999988976443211 100 234468899999999
Q ss_pred cEEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceee
Q 001109 96 GFLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEV 174 (1155)
Q Consensus 96 ~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 174 (1155)
+||++++.|+.|+|||.++.+.++++.+| +.|.+++|--....||+++.|++|++|+.+... |
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-------~--------- 278 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-------Y--------- 278 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-------H---------
Confidence 99999999999999999999999999988 899999999999999999999999999877522 1
Q ss_pred eceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEE-cCCe
Q 001109 175 FNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVY-ANGL 253 (1155)
Q Consensus 175 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~-~dG~ 253 (1155)
.-++++ |...|.+ |..... .++++++ .|.+
T Consensus 279 ------------vetlyG-----------------------Hqd~v~~-----IdaL~r---------eR~vtVGgrDrT 309 (479)
T KOG0299|consen 279 ------------VETLYG-----------------------HQDGVLG-----IDALSR---------ERCVTVGGRDRT 309 (479)
T ss_pred ------------HHHHhC-----------------------Cccceee-----echhcc---------cceEEeccccce
Confidence 011122 2333433 433222 3456655 9999
Q ss_pred EEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcC
Q 001109 254 IILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLR 333 (1155)
Q Consensus 254 I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~ 333 (1155)
++||.+.+...+-.++ +.+.+-|+||- +...+++|+.||.|.+|++.
T Consensus 310 ~rlwKi~eesqlifrg-------------------------------~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 310 VRLWKIPEESQLIFRG-------------------------------GEGSIDCVAFI--NDEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred eEEEeccccceeeeeC-------------------------------CCCCeeeEEEe--cccceeeccCCceEEEeeec
Confidence 9999996655443332 35678899997 78889999999999999986
Q ss_pred CC
Q 001109 334 AA 335 (1155)
Q Consensus 334 s~ 335 (1155)
..
T Consensus 357 KK 358 (479)
T KOG0299|consen 357 KK 358 (479)
T ss_pred cc
Confidence 53
No 81
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.84 E-value=2.4e-19 Score=199.51 Aligned_cols=152 Identities=18% Similarity=0.161 Sum_probs=117.8
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCC--CeEEEEEecCCCeEEEEeCCCeEEEEEecc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESE--SVSALEFCSVTLNLAIGSSSGLVWLYNLIK 623 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~--~V~~lafspdg~~Lasgs~dG~V~lwd~~~ 623 (1155)
+|++++.++|+|..||+|.+||.......+.+.++ ..|.. .|+||.||+||++|++-+.|+++++||++.
T Consensus 324 ~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk--------~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 324 AWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK--------DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred ecCCCcchhhhcccCCceeeeecCCcccccceEee--------eccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 67788889999999999999997544433333332 14554 899999999999999999999999999987
Q ss_pred CccccceeeeccCCceEEEecCCCCCceeEEeecC--CCCeEEEEEcCCCCEEEEEeC------CCcEEEEecCCccEEE
Q 001109 624 SSNEETLNLVTETGKEVHILPGGDGPQCKALFSVL--NSPICNLKFSNFGARLAVGFE------CSQVAMLDISTFSVLF 695 (1155)
Q Consensus 624 ~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h--~~~VtslafSpdg~~LAsGs~------Dg~V~lWDi~~~~~l~ 695 (1155)
.... +.++.+. .-+-+.++|||+.++|++|+. .|++.++|..+-..++
T Consensus 396 ~kkp------------------------L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ 451 (641)
T KOG0772|consen 396 FKKP------------------------LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVY 451 (641)
T ss_pred cccc------------------------hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEE
Confidence 5321 1111221 124567899999999999875 5789999999988888
Q ss_pred EeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEE
Q 001109 696 ITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCD 754 (1155)
Q Consensus 696 ~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd 754 (1155)
.+.+ ....|..+.|. |-=+.|++|+.||++.|+=
T Consensus 452 ki~i---~~aSvv~~~Wh----------------------pkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 452 KIDI---STASVVRCLWH----------------------PKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EecC---CCceEEEEeec----------------------chhhheeeecCCCceEEEE
Confidence 8765 57789999998 4455699999999999874
No 82
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.84 E-value=2.4e-20 Score=196.24 Aligned_cols=166 Identities=16% Similarity=0.220 Sum_probs=131.8
Q ss_pred ccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEE--c-------CCCCCEEEEEEEcCCcEEEEEecCCeEE
Q 001109 38 HYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLV--S-------PKQLAFKHLEFLQNQGFLVSISSGNEIQ 108 (1155)
Q Consensus 38 ~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~--~-------~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~ 108 (1155)
..|..+.+.|..|||||++|++|+.||-|.||+..++..... + -+..+|.++.|+.|...|++++.||.|+
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 368888999999999999999999999999999765543211 1 1357999999999999999999999999
Q ss_pred EEECCCCceeeeec-CC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccc
Q 001109 109 LWDLEARRITSTLP-WE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNH 186 (1155)
Q Consensus 109 vWDl~t~~~~~~l~-~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~ 186 (1155)
||.+++|.|+..+. .| ..|+|
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~--------------------------------------------------------- 311 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTC--------------------------------------------------------- 311 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeE---------------------------------------------------------
Confidence 99999999887664 22 33444
Q ss_pred ccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEE
Q 001109 187 IQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVL 266 (1155)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~ 266 (1155)
+.|+-++ .++++++-|.++++.-++.|++++
T Consensus 312 -----------------------------------------l~FSrD~--------SqiLS~sfD~tvRiHGlKSGK~LK 342 (508)
T KOG0275|consen 312 -----------------------------------------LSFSRDN--------SQILSASFDQTVRIHGLKSGKCLK 342 (508)
T ss_pred -----------------------------------------EEEccCc--------chhhcccccceEEEeccccchhHH
Confidence 4444432 346677777788888888888775
Q ss_pred EecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccc
Q 001109 267 VRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKD 340 (1155)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~ 340 (1155)
. ++ +|...|+.+.|+ +||..+++++.||+|++|+..+.++...
T Consensus 343 E-------fr-----------------------GHsSyvn~a~ft-~dG~~iisaSsDgtvkvW~~KtteC~~T 385 (508)
T KOG0275|consen 343 E-------FR-----------------------GHSSYVNEATFT-DDGHHIISASSDGTVKVWHGKTTECLST 385 (508)
T ss_pred H-------hc-----------------------CccccccceEEc-CCCCeEEEecCCccEEEecCcchhhhhh
Confidence 3 12 258889999999 9999999999999999999999877543
No 83
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.7e-19 Score=207.02 Aligned_cols=276 Identities=17% Similarity=0.200 Sum_probs=196.0
Q ss_pred EEEEcCCcEEEEEecCCeEEEEECCCCceeeeecC-CCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceec
Q 001109 89 LEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPW-ESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYV 167 (1155)
Q Consensus 89 l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~-~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i 167 (1155)
+.|+.. .+++++.+..|.+|+-.++........ ...|+++.++++|.+|++|..+|.|.||+..... . +
T Consensus 183 ldWss~--n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k--~------~ 252 (484)
T KOG0305|consen 183 LDWSSA--NVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK--K------T 252 (484)
T ss_pred hhcccC--CeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc--c------c
Confidence 456643 266666788999999999986554444 6889999999999999999999999999644321 1 0
Q ss_pred cCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEE
Q 001109 168 PKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLL 247 (1155)
Q Consensus 168 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~lls 247 (1155)
+. +.+ .+.. .|.+++|.. ..+.+
T Consensus 253 ~~--------------------~~~----------------------~h~~-----rvg~laW~~----------~~lss 275 (484)
T KOG0305|consen 253 RT--------------------LRG----------------------SHAS-----RVGSLAWNS----------SVLSS 275 (484)
T ss_pred cc--------------------ccC----------------------CcCc-----eeEEEeccC----------ceEEE
Confidence 00 000 0122 344588884 46999
Q ss_pred EEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcE
Q 001109 248 VYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDI 327 (1155)
Q Consensus 248 g~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I 327 (1155)
|+.||.|..+|++..+.... . ++ +|..+|+.+.|+ +|+.++|+|+.|+.+
T Consensus 276 Gsr~~~I~~~dvR~~~~~~~-~-----~~-----------------------~H~qeVCgLkws-~d~~~lASGgnDN~~ 325 (484)
T KOG0305|consen 276 GSRDGKILNHDVRISQHVVS-T-----LQ-----------------------GHRQEVCGLKWS-PDGNQLASGGNDNVV 325 (484)
T ss_pred ecCCCcEEEEEEecchhhhh-h-----hh-----------------------cccceeeeeEEC-CCCCeeccCCCccce
Confidence 99999999999987654321 0 11 268899999999 999999999999999
Q ss_pred EEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCccc
Q 001109 328 LLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRI 407 (1155)
Q Consensus 328 ~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~ 407 (1155)
.|||..+... +.+ ...
T Consensus 326 ~Iwd~~~~~p------------~~~----~~~------------------------------------------------ 341 (484)
T KOG0305|consen 326 FIWDGLSPEP------------KFT----FTE------------------------------------------------ 341 (484)
T ss_pred EeccCCCccc------------cEE----Eec------------------------------------------------
Confidence 9999833211 000 001
Q ss_pred ccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCc
Q 001109 408 ESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPH 487 (1155)
Q Consensus 408 ~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~ 487 (1155)
|..+
T Consensus 342 ----------------------------------------------------------------------------H~aA 345 (484)
T KOG0305|consen 342 ----------------------------------------------------------------------------HTAA 345 (484)
T ss_pred ----------------------------------------------------------------------------ccee
Confidence 2333
Q ss_pred ceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEE--ECCCcEEE
Q 001109 488 MTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAG--YRDGSTRI 565 (1155)
Q Consensus 488 It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTg--s~DgtVrl 565 (1155)
|.+++++|- ...+||+| +.|+.|+|
T Consensus 346 VKA~awcP~-----------------------------------------------------q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 346 VKALAWCPW-----------------------------------------------------QSGLLATGGGSADRCIKF 372 (484)
T ss_pred eeEeeeCCC-----------------------------------------------------ccCceEEcCCCcccEEEE
Confidence 333333210 01145655 46999999
Q ss_pred EeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEE--eCCCeEEEEEeccCccccceeeeccCCceEEEe
Q 001109 566 WDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIG--SSSGLVWLYNLIKSSNEETLNLVTETGKEVHIL 643 (1155)
Q Consensus 566 WD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasg--s~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~ 643 (1155)
||..++.. +..+ ....-|.+|.|++..+.|+++ ..+..|.||++....
T Consensus 373 wn~~~g~~--i~~v----------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~------------------ 422 (484)
T KOG0305|consen 373 WNTNTGAR--IDSV----------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK------------------ 422 (484)
T ss_pred EEcCCCcE--eccc----------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc------------------
Confidence 99988863 1212 123479999999999877764 456789999997732
Q ss_pred cCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCc
Q 001109 644 PGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTF 691 (1155)
Q Consensus 644 ~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~ 691 (1155)
..+.+.+|+..|..+++||||..+++|+.|.++++|++-+.
T Consensus 423 -------~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 423 -------LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred -------eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 23567899999999999999999999999999999998763
No 84
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.84 E-value=4e-20 Score=194.20 Aligned_cols=165 Identities=15% Similarity=0.203 Sum_probs=134.8
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
.|+|...+|++|+.|++||++|++.+....-+ + .-....+|.+|.|.|.|.+|++|.+--++++||+.+..
T Consensus 179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~--K-------~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAF--K-------VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ 249 (430)
T ss_pred eecchhheEEeccCCCeEEEEecccHHHHHHH--H-------HhhccceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence 67788889999999999999999876421101 0 11233599999999999999999999999999998843
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCC-
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSN- 704 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~- 704 (1155)
. |++.+ .-..|++.|++|.+|+.|++-++|+.||.|+|||--+++|+.++.- .|.
T Consensus 250 c-----fvsan-----------------Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~--AH~g 305 (430)
T KOG0640|consen 250 C-----FVSAN-----------------PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN--AHGG 305 (430)
T ss_pred E-----eeecC-----------------cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh--hcCC
Confidence 2 22211 1146999999999999999999999999999999999999876532 454
Q ss_pred CCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeee
Q 001109 705 SPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRS 765 (1155)
Q Consensus 705 ~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~ 765 (1155)
+.|.|..|. .+|+++++.++|+.+++|++.||.+|..-+
T Consensus 306 sevcSa~Ft----------------------kn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 306 SEVCSAVFT----------------------KNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred ceeeeEEEc----------------------cCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 579999998 779999999999999999999999987763
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.84 E-value=3e-19 Score=214.20 Aligned_cols=272 Identities=17% Similarity=0.217 Sum_probs=202.9
Q ss_pred cEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEE
Q 001109 243 SQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGY 322 (1155)
Q Consensus 243 ~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~ 322 (1155)
+.+.++..+++|.+||..++..+.... . +|.+.|.++++. .-+.+|++|+
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l------~-----------------------GH~g~V~~l~~~-~~~~~lvsgS 268 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNGYLILTRL------V-----------------------GHFGGVWGLAFP-SGGDKLVSGS 268 (537)
T ss_pred CeEEecCCCceeEEeecccceEEEeec------c-----------------------CCCCCceeEEEe-cCCCEEEEEe
Confidence 469999999999999999998876511 1 268899999997 5688999999
Q ss_pred cCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEcc
Q 001109 323 VDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLN 402 (1155)
Q Consensus 323 ~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~ 402 (1155)
.|.++++||..++.+... + .+|.. .+..+...
T Consensus 269 ~D~t~rvWd~~sg~C~~~------------l----~gh~s--------------------------------tv~~~~~~ 300 (537)
T KOG0274|consen 269 TDKTERVWDCSTGECTHS------------L----QGHTS--------------------------------SVRCLTID 300 (537)
T ss_pred cCCcEEeEecCCCcEEEE------------e----cCCCc--------------------------------eEEEEEcc
Confidence 999999999988765321 0 01111 12111110
Q ss_pred CCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccc
Q 001109 403 WSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIP 482 (1155)
Q Consensus 403 ~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~ 482 (1155)
+..++.++.|.++++|+... ......+.
T Consensus 301 ------------------------------------~~~~~sgs~D~tVkVW~v~n----------------~~~l~l~~ 328 (537)
T KOG0274|consen 301 ------------------------------------PFLLVSGSRDNTVKVWDVTN----------------GACLNLLR 328 (537)
T ss_pred ------------------------------------CceEeeccCCceEEEEeccC----------------cceEEEec
Confidence 11222335677899999652 12222333
Q ss_pred cCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCc
Q 001109 483 TIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGS 562 (1155)
Q Consensus 483 ~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~Dgt 562 (1155)
+|..+|.++.+ ++.++++|+.||+
T Consensus 329 ~h~~~V~~v~~--------------------------------------------------------~~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 329 GHTGPVNCVQL--------------------------------------------------------DEPLLVSGSYDGT 352 (537)
T ss_pred cccccEEEEEe--------------------------------------------------------cCCEEEEEecCce
Confidence 35555555533 1347999999999
Q ss_pred EEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEE
Q 001109 563 TRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHI 642 (1155)
Q Consensus 563 VrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~ 642 (1155)
|++||+.+++ ++..+. ||..+|+++.|.+. ..+.+|+.|++|++||+.+..
T Consensus 353 v~VW~~~~~~--cl~sl~---------gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~----------------- 403 (537)
T KOG0274|consen 353 VKVWDPRTGK--CLKSLS---------GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR----------------- 403 (537)
T ss_pred EEEEEhhhce--eeeeec---------CCcceEEEEEecCc-ceEEeeeeccceEeecCCchh-----------------
Confidence 9999999665 455554 89999999988876 889999999999999998741
Q ss_pred ecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccc
Q 001109 643 LPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLT 722 (1155)
Q Consensus 643 ~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~ 722 (1155)
+|+.++.+|.+-|.++.+ .+++|.+++.||+|++||..++.+++.... .|...|..+++.
T Consensus 404 -------~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~--~~~~~v~~l~~~--------- 463 (537)
T KOG0274|consen 404 -------KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG--RHVGGVSALALG--------- 463 (537)
T ss_pred -------hhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeecc--CCcccEEEeecC---------
Confidence 355778899998876665 578999999999999999999999876532 267888888875
Q ss_pred cCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeee
Q 001109 723 ISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 723 ~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
...+++++.|+++.+||+.+|+++...
T Consensus 464 ---------------~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 464 ---------------KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ---------------cceEEEEecCCeeEEEecccCchhhhh
Confidence 356999999999999999999987755
No 86
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=4.3e-20 Score=218.14 Aligned_cols=243 Identities=16% Similarity=0.169 Sum_probs=176.1
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCc--------------------------------------------
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNI-------------------------------------------- 74 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~-------------------------------------------- 74 (1155)
..|.+.|.++.||+||+|||+|+.||.|+||.+...
T Consensus 264 ~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred cccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 389999999999999999999999999999954330
Q ss_pred --eE-E-----E---------EcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCCCceeEEEEec-CC
Q 001109 75 --EG-L-----L---------VSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESNITAFSVIF-GT 136 (1155)
Q Consensus 75 --~~-~-----~---------~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~sp-d~ 136 (1155)
.. + + ..+|.+-|..|.|+.+ ++|+|+|.|.|||+|++....|+++|.+...|||++|+| |+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDD 422 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCC
Confidence 00 0 0 0024556889999998 799999999999999999999999999999999999998 67
Q ss_pred CEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeec-eeEeeEecccccccccccccccceeeecCCCCCC-----
Q 001109 137 SYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFN-HLLLEFCPNHIQREKGKAAFNASLLFYCMPPDES----- 210 (1155)
Q Consensus 137 ~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~-~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----- 210 (1155)
+|+++|+-||.|++|.+.. .++. -|. . +-. +.+++|+||+.+.+-| .++....+|.......
T Consensus 423 ryFiSGSLD~KvRiWsI~d--~~Vv--~W~----D--l~~lITAvcy~PdGk~avIG--t~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISD--KKVV--DWN----D--LRDLITAVCYSPDGKGAVIG--TFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred CcEeecccccceEEeecCc--CeeE--eeh----h--hhhhheeEEeccCCceEEEE--EeccEEEEEEccCCeEEEeee
Confidence 8999999999999996543 2232 010 0 111 2389999999655533 1122333443322110
Q ss_pred -----CcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCC
Q 001109 211 -----GFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSK 285 (1155)
Q Consensus 211 -----~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (1155)
+.... +..|++ +.|.|... +.|++.+.|..|||+|..+..++....+ ..
T Consensus 491 I~~~~~Kk~~-~~rITG-----~Q~~p~~~-------~~vLVTSnDSrIRI~d~~~~~lv~KfKG------------~~- 544 (712)
T KOG0283|consen 491 IRLHNKKKKQ-GKRITG-----LQFFPGDP-------DEVLVTSNDSRIRIYDGRDKDLVHKFKG------------FR- 544 (712)
T ss_pred EeeccCcccc-Cceeee-----eEecCCCC-------CeEEEecCCCceEEEeccchhhhhhhcc------------cc-
Confidence 00111 225666 99999765 5799999999999999987777653111 00
Q ss_pred CCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCC
Q 001109 286 NAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAA 336 (1155)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~ 336 (1155)
....-..+.|+ .||++|++|+.|-.|++|++....
T Consensus 545 ---------------n~~SQ~~Asfs-~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 545 ---------------NTSSQISASFS-SDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ---------------cCCcceeeeEc-cCCCEEEEeecCceEEEEeCCCCc
Confidence 02223477898 899999999999999999987653
No 87
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.3e-19 Score=198.74 Aligned_cols=136 Identities=20% Similarity=0.236 Sum_probs=103.8
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccc-ee
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEET-LN 631 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~-~~ 631 (1155)
.++|+|.|.++|+||+..+.+. ..+.. ..++.+++.+|-.+.+.+|+.+|.|.+.++..-+.... +.
T Consensus 190 rl~TaS~D~t~k~wdlS~g~LL--lti~f----------p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~ 257 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSLGVLL--LTITF----------PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVN 257 (476)
T ss_pred eEEEecCCceEEEEEeccceee--EEEec----------CCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccc
Confidence 6899999999999999999753 22221 24899999999999999999999999988876442100 00
Q ss_pred eeccCCceEEEecCCCCCceeEEeecCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeE
Q 001109 632 LVTETGKEVHILPGGDGPQCKALFSVLNS--PICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLY 709 (1155)
Q Consensus 632 ~v~~~~~~~~~~~~~~g~~~~~~l~~h~~--~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~s 709 (1155)
.. .+. .+ ...+..+.+|.+ +|+||++|-||.+|++|+.||.|.|||+.+.+++++... ..+||+.
T Consensus 258 -~k-----~~~---~~-~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~---~kgpVtn 324 (476)
T KOG0646|consen 258 -QK-----GRH---EE-NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT---SKGPVTN 324 (476)
T ss_pred -cc-----ccc---cc-cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh---hccccce
Confidence 00 000 00 012346789988 999999999999999999999999999999988875432 5789999
Q ss_pred EEEe
Q 001109 710 LAVK 713 (1155)
Q Consensus 710 lafs 713 (1155)
|.+.
T Consensus 325 L~i~ 328 (476)
T KOG0646|consen 325 LQIN 328 (476)
T ss_pred eEee
Confidence 9996
No 88
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.83 E-value=1.1e-18 Score=209.49 Aligned_cols=280 Identities=15% Similarity=0.198 Sum_probs=212.7
Q ss_pred CCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEE-c-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCcee
Q 001109 41 IPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLV-S-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRIT 118 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~-~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~ 118 (1155)
+...+.+..|. +.++++|+.|.+|++|+..+...+.. + +|.+.|++++|...+.+|++|+.|.+++|||..+|.+.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56678888888 56889999999999999988776655 3 67899999999987789999999999999999999999
Q ss_pred eeecCCC-ceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccc
Q 001109 119 STLPWES-NITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFN 197 (1155)
Q Consensus 119 ~~l~~~~-~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ 197 (1155)
+++.+|. .|.+
T Consensus 285 ~~l~gh~stv~~-------------------------------------------------------------------- 296 (537)
T KOG0274|consen 285 HSLQGHTSSVRC-------------------------------------------------------------------- 296 (537)
T ss_pred EEecCCCceEEE--------------------------------------------------------------------
Confidence 8887653 1111
Q ss_pred cceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccccccc
Q 001109 198 ASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKT 277 (1155)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~ 277 (1155)
+...+ ..+++|+.|.+|++|++.++..+.+.+.
T Consensus 297 ------------------------------~~~~~----------~~~~sgs~D~tVkVW~v~n~~~l~l~~~------- 329 (537)
T KOG0274|consen 297 ------------------------------LTIDP----------FLLVSGSRDNTVKVWDVTNGACLNLLRG------- 329 (537)
T ss_pred ------------------------------EEccC----------ceEeeccCCceEEEEeccCcceEEEecc-------
Confidence 11111 2467788999999999999999887431
Q ss_pred ccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccC
Q 001109 278 EIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSS 357 (1155)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~ 357 (1155)
|..+|.++... +..+++|+.||+|++||+.++++
T Consensus 330 -----------------------h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~c-------------------- 363 (537)
T KOG0274|consen 330 -----------------------HTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKC-------------------- 363 (537)
T ss_pred -----------------------ccccEEEEEec---CCEEEEEecCceEEEEEhhhcee--------------------
Confidence 47889999864 89999999999999999874321
Q ss_pred CCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCC
Q 001109 358 GNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNES 437 (1155)
Q Consensus 358 ~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~ 437 (1155)
++
T Consensus 364 --------------------------------------l~---------------------------------------- 365 (537)
T KOG0274|consen 364 --------------------------------------LK---------------------------------------- 365 (537)
T ss_pred --------------------------------------ee----------------------------------------
Confidence 10
Q ss_pred CceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhcccc
Q 001109 438 HGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRA 517 (1155)
Q Consensus 438 ~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 517 (1155)
.+.+|...|+++.+.
T Consensus 366 ------------------------------------------sl~gH~~~V~sl~~~----------------------- 380 (537)
T KOG0274|consen 366 ------------------------------------------SLSGHTGRVYSLIVD----------------------- 380 (537)
T ss_pred ------------------------------------------eecCCcceEEEEEec-----------------------
Confidence 011133334433220
Q ss_pred CCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEE
Q 001109 518 SHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSA 597 (1155)
Q Consensus 518 ~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~ 597 (1155)
+. ..+++|+.|++||+||+.+.. .+++++. +|..-|..
T Consensus 381 -------------------------------~~-~~~~Sgs~D~~IkvWdl~~~~-~c~~tl~---------~h~~~v~~ 418 (537)
T KOG0274|consen 381 -------------------------------SE-NRLLSGSLDTTIKVWDLRTKR-KCIHTLQ---------GHTSLVSS 418 (537)
T ss_pred -------------------------------Cc-ceEEeeeeccceEeecCCchh-hhhhhhc---------CCcccccc
Confidence 00 368999999999999999882 2344443 67767766
Q ss_pred EEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeec-CCCCeEEEEEcCCCCEEEE
Q 001109 598 LEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSV-LNSPICNLKFSNFGARLAV 676 (1155)
Q Consensus 598 lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~-h~~~VtslafSpdg~~LAs 676 (1155)
+.+ .++.|++++.||+|++||...+. |..++.+ |.+.|+++++. -..+++
T Consensus 419 l~~--~~~~Lvs~~aD~~Ik~WD~~~~~-------------------------~~~~~~~~~~~~v~~l~~~--~~~il~ 469 (537)
T KOG0274|consen 419 LLL--RDNFLVSSSADGTIKLWDAEEGE-------------------------CLRTLEGRHVGGVSALALG--KEEILC 469 (537)
T ss_pred ccc--ccceeEeccccccEEEeecccCc-------------------------eeeeeccCCcccEEEeecC--cceEEE
Confidence 554 56799999999999999988754 2345566 67899999987 457889
Q ss_pred EeCCCcEEEEecCCccEEEEe
Q 001109 677 GFECSQVAMLDISTFSVLFIT 697 (1155)
Q Consensus 677 Gs~Dg~V~lWDi~~~~~l~~~ 697 (1155)
++.||++++||+++++..+..
T Consensus 470 s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 470 SSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EecCCeeEEEecccCchhhhh
Confidence 999999999999998887644
No 89
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.83 E-value=2.7e-17 Score=182.91 Aligned_cols=414 Identities=15% Similarity=0.147 Sum_probs=266.6
Q ss_pred CceEEEEcCCCCEEEEEEcCCeEEEEccCCceEE-----EEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCcee
Q 001109 44 TASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGL-----LVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRIT 118 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~-----~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~ 118 (1155)
.|...+|.|.+.-|.+....|.+..|+..+.... +.-..+..|.+++|.+| +.+++++.+|.|.||+..+.+..
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en-gdviTgDS~G~i~Iw~~~~~~~~ 280 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN-GDVITGDSGGNILIWSKGTNRIS 280 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCC-CCEEeecCCceEEEEeCCCceEE
Confidence 3567899999877777777899999987665432 22234578999999999 46999999999999999877766
Q ss_pred eeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccc
Q 001109 119 STLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFN 197 (1155)
Q Consensus 119 ~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ 197 (1155)
.+...| +.|.++....+|.+|- |+.|..|..|+=+....+ +-.+|.
T Consensus 281 k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r----~~elPe---------------------------- 327 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLR----ETELPE---------------------------- 327 (626)
T ss_pred eEeeecCCceEEEEEecCccEee-cCccceEEeccccccccc----cccCch----------------------------
Confidence 655454 8899999999998776 999999988862221100 111111
Q ss_pred cceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccccccc
Q 001109 198 ASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKT 277 (1155)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~ 277 (1155)
. .+++.- ++- .. + . |++|...+.|..=.+..+-.+.+.+
T Consensus 328 ----------~--------~G~iRt-----v~e--~~-~------d-i~vGTtrN~iL~Gt~~~~f~~~v~g-------- 366 (626)
T KOG2106|consen 328 ----------Q--------FGPIRT-----VAE--GK-G------D-ILVGTTRNFILQGTLENGFTLTVQG-------- 366 (626)
T ss_pred ----------h--------cCCeeE-----Eec--CC-C------c-EEEeeccceEEEeeecCCceEEEEe--------
Confidence 0 122222 332 22 2 3 8888888888666666665554422
Q ss_pred ccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccC
Q 001109 278 EIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSS 357 (1155)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~ 357 (1155)
|..+...++-+ |+...++|++.|+.+++|+ ...
T Consensus 367 -----------------------h~delwgla~h-ps~~q~~T~gqdk~v~lW~--~~k--------------------- 399 (626)
T KOG2106|consen 367 -----------------------HGDELWGLATH-PSKNQLLTCGQDKHVRLWN--DHK--------------------- 399 (626)
T ss_pred -----------------------cccceeeEEcC-CChhheeeccCcceEEEcc--CCc---------------------
Confidence 35578888988 8999999999999999999 110
Q ss_pred CCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCC
Q 001109 358 GNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNES 437 (1155)
Q Consensus 358 ~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~ 437 (1155)
+.|+.-. .+. . .+++| -|
T Consensus 400 ---------~~wt~~~----~d~---------------~--------------------------~~~~f--hp------ 417 (626)
T KOG2106|consen 400 ---------LEWTKII----EDP---------------A--------------------------ECADF--HP------ 417 (626)
T ss_pred ---------eeEEEEe----cCc---------------e--------------------------eEeec--cC------
Confidence 1121100 000 0 00111 11
Q ss_pred CceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhcccc
Q 001109 438 HGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRA 517 (1155)
Q Consensus 438 ~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 517 (1155)
...+++.+..|...+.|.... ..+..|. + .
T Consensus 418 -sg~va~Gt~~G~w~V~d~e~~-------------------~lv~~~~----------d--~------------------ 447 (626)
T KOG2106|consen 418 -SGVVAVGTATGRWFVLDTETQ-------------------DLVTIHT----------D--N------------------ 447 (626)
T ss_pred -cceEEEeeccceEEEEecccc-------------------eeEEEEe----------c--C------------------
Confidence 114556666777777775310 0000010 0 0
Q ss_pred CCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEE
Q 001109 518 SHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSA 597 (1155)
Q Consensus 518 ~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~ 597 (1155)
.| .++..|+|+|.+||.|+.|+.|.++-++..... +..-. ...+ .+|++
T Consensus 448 --~~--------------------ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~--y~r~~-----k~~g--s~ith 496 (626)
T KOG2106|consen 448 --EQ--------------------LSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK--YSRVG-----KCSG--SPITH 496 (626)
T ss_pred --Cc--------------------eEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE--EEEee-----eecC--ceeEE
Confidence 00 112278899999999999999999988765411 22111 0113 69999
Q ss_pred EEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeE---Ee-ecCCCCeEEEEEcCCCCE
Q 001109 598 LEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKA---LF-SVLNSPICNLKFSNFGAR 673 (1155)
Q Consensus 598 lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~---~l-~~h~~~VtslafSpdg~~ 673 (1155)
|+||+|+++|.+-+-|-.+..|....-.....+ ..++. ..+.|.. ++ ..|...|.+++-|...+.
T Consensus 497 LDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~----------kDvkW-~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~ 565 (626)
T KOG2106|consen 497 LDWSSDSQFLVSNSGDYEILYWKPSECKQITSV----------KDVKW-ATYTCTLGFEVFGGSDGTDINAVARSHCEKL 565 (626)
T ss_pred eeecCCCceEEeccCceEEEEEccccCccccee----------cceee-eeeEEEEEEEEecccCCchHHHhhhhhhhhh
Confidence 999999999999999999999933221111000 00000 0011211 11 346778999999999999
Q ss_pred EEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEE
Q 001109 674 LAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVC 753 (1155)
Q Consensus 674 LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vw 753 (1155)
+|+|.+.|.|+|+..--.+.....+...+|++-|++++|. -+...|++..+|.+|..|
T Consensus 566 lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl----------------------~~d~~li~tg~D~Si~qW 623 (626)
T KOG2106|consen 566 LASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFL----------------------CKDSHLISTGKDTSIMQW 623 (626)
T ss_pred hhccccCceEEEEccccCCCcccceeeccccceeEEEEEe----------------------eCCceEEecCCCceEEEE
Confidence 9999999999999863222221222346899999999998 345566666699999999
Q ss_pred EC
Q 001109 754 DS 755 (1155)
Q Consensus 754 d~ 755 (1155)
++
T Consensus 624 ~l 625 (626)
T KOG2106|consen 624 RL 625 (626)
T ss_pred Ee
Confidence 86
No 90
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.6e-18 Score=200.70 Aligned_cols=150 Identities=21% Similarity=0.292 Sum_probs=121.4
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecC-CCeEEEEe--CCCeEEEEEec
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSV-TLNLAIGS--SSGLVWLYNLI 622 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspd-g~~Lasgs--~dG~V~lwd~~ 622 (1155)
.++++++.+|+|+.|+.+.|||..... ++..+ .+|.++|.+++|||- ..+||+|+ .|+.|++|+..
T Consensus 308 kws~d~~~lASGgnDN~~~Iwd~~~~~--p~~~~---------~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~ 376 (484)
T KOG0305|consen 308 KWSPDGNQLASGGNDNVVFIWDGLSPE--PKFTF---------TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN 376 (484)
T ss_pred EECCCCCeeccCCCccceEeccCCCcc--ccEEE---------eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC
Confidence 677889999999999999999995544 23333 278899999999995 55788865 68999999998
Q ss_pred cCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEE--EeCCCcEEEEecCCccEEEEeccC
Q 001109 623 KSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAV--GFECSQVAMLDISTFSVLFITDSL 700 (1155)
Q Consensus 623 ~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAs--Gs~Dg~V~lWDi~~~~~l~~~~~~ 700 (1155)
++..... ..-.+.|.+|.||+..+-|++ |..++.|.||++-+.+.+.. +
T Consensus 377 ~g~~i~~--------------------------vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~---l 427 (484)
T KOG0305|consen 377 TGARIDS--------------------------VDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAE---L 427 (484)
T ss_pred CCcEecc--------------------------cccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeee---e
Confidence 7643200 123567999999999975554 78889999999988766653 4
Q ss_pred CCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC
Q 001109 701 SNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 701 ~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t 757 (1155)
.+|..+|..|+++ |||..+++|+.|.++++|+.=.
T Consensus 428 ~gH~~RVl~la~S----------------------Pdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 428 LGHTSRVLYLALS----------------------PDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred cCCcceeEEEEEC----------------------CCCCEEEEecccCcEEeccccC
Confidence 6899999999999 9999999999999999999754
No 91
>PTZ00421 coronin; Provisional
Probab=99.82 E-value=1.1e-18 Score=209.00 Aligned_cols=205 Identities=16% Similarity=0.212 Sum_probs=152.5
Q ss_pred ccCCCCCceEEEEcC-CCCEEEEEEcCCeEEEEccCCce-------EE-EEcCCCCCEEEEEEEcCC-cEEEEEecCCeE
Q 001109 38 HYGIPSTASILAFDH-VQSLLAIGTQDGRIKVIGGDNIE-------GL-LVSPKQLAFKHLEFLQNQ-GFLVSISSGNEI 107 (1155)
Q Consensus 38 ~~G~~~~vs~lafsp-~g~lLAsgs~DG~I~vw~~~~~~-------~~-~~~~~~~~V~~l~Fs~dg-~~LvS~s~Dg~I 107 (1155)
..||.+.|++++|+| ++++||+|+.||+|+||+..... .+ ....|...|.+|+|+|++ .+|++++.|++|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 369999999999999 88999999999999999975431 12 223577899999999985 689999999999
Q ss_pred EEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccc
Q 001109 108 QLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNH 186 (1155)
Q Consensus 108 ~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~ 186 (1155)
+|||+++++.+..+..| ..|++++|+|++.+|++|+.||+|++|+... ++.. +.+.
T Consensus 151 rIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs--g~~v---~tl~------------------ 207 (493)
T PTZ00421 151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD--GTIV---SSVE------------------ 207 (493)
T ss_pred EEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC--CcEE---EEEe------------------
Confidence 99999999998888866 7899999999999999999999999996543 2221 0000
Q ss_pred ccccccccccccceeeecCCCCCCCccccccc-ccccceeeEEEEeecccccccccccEEEEEE----cCCeEEEEEccC
Q 001109 187 IQREKGKAAFNASLLFYCMPPDESGFIDFIIR-SKLRFFVEIRLLQFQKHVNSTLGFSQLLLVY----ANGLIILWDVSE 261 (1155)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~----~dG~I~lWd~~~ 261 (1155)
+ +.+ .... +.|.|+. +.+++++ .|+.|+|||++.
T Consensus 208 -----~-----------------------H~~~~~~~-----~~w~~~~--------~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 208 -----A-----------------------HASAKSQR-----CLWAKRK--------DLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred -----c-----------------------CCCCcceE-----EEEcCCC--------CeEEEEecCCCCCCeEEEEeCCC
Confidence 0 011 1122 6677764 3465543 479999999976
Q ss_pred Ce-EEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEE-cCCcEEEEEcCCCC
Q 001109 262 DK-VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGY-VDGDILLWNLRAAA 336 (1155)
Q Consensus 262 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~-~DG~I~lWd~~s~~ 336 (1155)
.. .+.... +. ....+....|+ +|+.+|++|+ .||.|++||+.++.
T Consensus 247 ~~~p~~~~~-----~d------------------------~~~~~~~~~~d-~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 247 MASPYSTVD-----LD------------------------QSSALFIPFFD-EDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred CCCceeEec-----cC------------------------CCCceEEEEEc-CCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 43 222100 00 12345556777 9999999988 49999999998764
No 92
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.82 E-value=3.4e-19 Score=182.53 Aligned_cols=287 Identities=15% Similarity=0.107 Sum_probs=209.8
Q ss_pred ccccccceeeEEEEeeccc-ccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccc
Q 001109 217 IRSKLRFFVEIRLLQFQKH-VNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETV 295 (1155)
Q Consensus 217 ~~~v~~~~v~~v~~~p~~~-~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1155)
..+|+. ++|+|-.+ | -.|++++.||.--|-+-.+|.-+-+
T Consensus 14 trpvvd-----l~~s~itp~g------~flisa~kd~~pmlr~g~tgdwigt---------------------------- 54 (334)
T KOG0278|consen 14 TRPVVD-----LAFSPITPDG------YFLISASKDGKPMLRNGDTGDWIGT---------------------------- 54 (334)
T ss_pred CcceeE-----EeccCCCCCc------eEEEEeccCCCchhccCCCCCcEEe----------------------------
Confidence 567777 99988543 3 4688899999988888888876654
Q ss_pred cccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCC
Q 001109 296 SDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSR 375 (1155)
Q Consensus 296 ~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~ 375 (1155)
+++|.+.|.+.+.. .+..+-|+++.|=+-++||.-++... .+-.|+.-|..++|+.
T Consensus 55 --feghkgavw~~~l~-~na~~aasaaadftakvw~a~tgdel-----------------hsf~hkhivk~~af~~---- 110 (334)
T KOG0278|consen 55 --FEGHKGAVWSATLN-KNATRAASAAADFTAKVWDAVTGDEL-----------------HSFEHKHIVKAVAFSQ---- 110 (334)
T ss_pred --eeccCcceeeeecC-chhhhhhhhcccchhhhhhhhhhhhh-----------------hhhhhhheeeeEEecc----
Confidence 12368999999998 89999999999999999998877532 2334666667776642
Q ss_pred CCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEec
Q 001109 376 NDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYD 455 (1155)
Q Consensus 376 ~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d 455 (1155)
+...++.||. +.-|++||
T Consensus 111 ---ds~~lltgg~-----------------------------------------------------------ekllrvfd 128 (334)
T KOG0278|consen 111 ---DSNYLLTGGQ-----------------------------------------------------------EKLLRVFD 128 (334)
T ss_pred ---cchhhhccch-----------------------------------------------------------HHHhhhhh
Confidence 3333444443 22345666
Q ss_pred CCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCccc
Q 001109 456 RPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLT 535 (1155)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~ 535 (1155)
... +...|..+.+|...|..+.++.
T Consensus 129 ln~---------------p~App~E~~ghtg~Ir~v~wc~---------------------------------------- 153 (334)
T KOG0278|consen 129 LNR---------------PKAPPKEISGHTGGIRTVLWCH---------------------------------------- 153 (334)
T ss_pred ccC---------------CCCCchhhcCCCCcceeEEEec----------------------------------------
Confidence 532 2223455666777776654421
Q ss_pred CCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCe
Q 001109 536 GGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGL 615 (1155)
Q Consensus 536 gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~ 615 (1155)
..+.+++...|++||+||..++... ..|.. +.+|+++.+++||++|.++. .+.
T Consensus 154 --------------eD~~iLSSadd~tVRLWD~rTgt~v--~sL~~----------~s~VtSlEvs~dG~ilTia~-gss 206 (334)
T KOG0278|consen 154 --------------EDKCILSSADDKTVRLWDHRTGTEV--QSLEF----------NSPVTSLEVSQDGRILTIAY-GSS 206 (334)
T ss_pred --------------cCceEEeeccCCceEEEEeccCcEE--EEEec----------CCCCcceeeccCCCEEEEec-Cce
Confidence 1124667789999999999988732 23321 24899999999999887764 568
Q ss_pred EEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEE
Q 001109 616 VWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLF 695 (1155)
Q Consensus 616 V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~ 695 (1155)
|.+||...-... .. ..-+..|.+...+|+-..+++|++|+.++.+|..++.-+-
T Consensus 207 V~Fwdaksf~~l-------------------------Ks-~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~ 260 (334)
T KOG0278|consen 207 VKFWDAKSFGLL-------------------------KS-YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG 260 (334)
T ss_pred eEEeccccccce-------------------------ee-ccCccccccccccCCCceEEecCcceEEEEEeccCCceee
Confidence 999998763210 11 1346679999999999999999999999999999997765
Q ss_pred EeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCce
Q 001109 696 ITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHI 760 (1155)
Q Consensus 696 ~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~ 760 (1155)
.. ..||.+||.+|.|+ |||..-++||+||+|++|-...|+.
T Consensus 261 ~~--nkgh~gpVhcVrFS----------------------PdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 261 SY--NKGHFGPVHCVRFS----------------------PDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ec--ccCCCCceEEEEEC----------------------CCCceeeccCCCceEEEEEecCCCc
Confidence 42 36899999999999 9999999999999999998765554
No 93
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.1e-18 Score=178.22 Aligned_cols=165 Identities=16% Similarity=0.227 Sum_probs=108.3
Q ss_pred CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCc-----eee-eecCCCceeEEEEecCCCEEEEEeCCCc-EEEEEe
Q 001109 81 PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARR-----ITS-TLPWESNITAFSVIFGTSYMYIGDEYGM-VYVLKY 153 (1155)
Q Consensus 81 ~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~-----~~~-~l~~~~~Vtsva~spd~~~l~~G~~dG~-V~vw~~ 153 (1155)
.|...|++++|+.||.+|++++.|++|+||+++.-. +++ .++. +..|.++|.||-+-+++....|. ++++..
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~-dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY-DHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC-CCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 467899999999999999999999999999997632 221 2222 46799999999998777766664 777765
Q ss_pred cCCC-ceeeccce-eccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEe
Q 001109 154 DTEE-GKLIHSPY-YVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQ 231 (1155)
Q Consensus 154 d~~~-~~l~~~~~-~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~ 231 (1155)
+-.. |... + .++.+ ...+..++.-.++ .+-
T Consensus 163 ~K~~dG~~~---~~~v~~D--------------------------------------~~~f~~kh~v~~i-------~iG 194 (420)
T KOG2096|consen 163 VKKTDGSGS---HHFVHID--------------------------------------NLEFERKHQVDII-------NIG 194 (420)
T ss_pred eecccCCCC---ccccccc--------------------------------------ccccchhcccceE-------EEe
Confidence 5322 1110 0 01111 0001111122222 222
Q ss_pred ecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEE
Q 001109 232 FQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWA 311 (1155)
Q Consensus 232 p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s 311 (1155)
-.+.+ .+|++++.|..|.||+++ |+++..... + ...-+.++.+
T Consensus 195 iA~~~------k~imsas~dt~i~lw~lk-Gq~L~~idt-----n-------------------------q~~n~~aavS 237 (420)
T KOG2096|consen 195 IAGNA------KYIMSASLDTKICLWDLK-GQLLQSIDT-----N-------------------------QSSNYDAAVS 237 (420)
T ss_pred ecCCc------eEEEEecCCCcEEEEecC-Cceeeeecc-----c-------------------------cccccceeeC
Confidence 22223 689999999999999998 777654110 0 2223456777
Q ss_pred ecCCCeEEEEEcCCcEEEEEc
Q 001109 312 SNDGSVLAVGYVDGDILLWNL 332 (1155)
Q Consensus 312 ~pdG~~lasg~~DG~I~lWd~ 332 (1155)
|+|++||+++---+|++|.+
T Consensus 238 -P~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 238 -PDGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred -CCCcEEEEecCCCCceEEEE
Confidence 99999999998888999975
No 94
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.9e-19 Score=183.90 Aligned_cols=246 Identities=15% Similarity=0.159 Sum_probs=175.0
Q ss_pred ccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCe-EEEEecccccccccccccCCCCCCCCCCcccc
Q 001109 217 IRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDK-VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETV 295 (1155)
Q Consensus 217 ~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1155)
...+.. ++|++..+ +++++++.||+++|||+.... ++.. ++
T Consensus 60 ~D~Lfd-----V~Wse~~e-------~~~~~a~GDGSLrl~d~~~~s~Pi~~-------~k------------------- 101 (311)
T KOG0277|consen 60 EDGLFD-----VAWSENHE-------NQVIAASGDGSLRLFDLTMPSKPIHK-------FK------------------- 101 (311)
T ss_pred ccceeE-----eeecCCCc-------ceEEEEecCceEEEeccCCCCcchhH-------HH-------------------
Confidence 345566 99999876 689999999999999954322 2221 11
Q ss_pred cccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCC
Q 001109 296 SDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSR 375 (1155)
Q Consensus 296 ~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~ 375 (1155)
+|..+|.++.|+..++..+++++.||+|++|+..-...... ..+|...|...+|++
T Consensus 102 ----EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T----------------f~gh~~~Iy~a~~sp---- 157 (311)
T KOG0277|consen 102 ----EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT----------------FNGHNSCIYQAAFSP---- 157 (311)
T ss_pred ----hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe----------------ecCCccEEEEEecCC----
Confidence 27889999999966788999999999999999875543221 112333344444332
Q ss_pred CCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEec
Q 001109 376 NDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYD 455 (1155)
Q Consensus 376 ~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d 455 (1155)
+.+..++..+.+|.+.+||
T Consensus 158 -------------------------------------------------------------~~~nlfas~Sgd~~l~lwd 176 (311)
T KOG0277|consen 158 -------------------------------------------------------------HIPNLFASASGDGTLRLWD 176 (311)
T ss_pred -------------------------------------------------------------CCCCeEEEccCCceEEEEE
Confidence 2234556667788999999
Q ss_pred CCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCccc
Q 001109 456 RPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLT 535 (1155)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~ 535 (1155)
.+. +. .++.++.|...|.|+.++-
T Consensus 177 vr~---------------~g-k~~~i~ah~~Eil~cdw~k---------------------------------------- 200 (311)
T KOG0277|consen 177 VRS---------------PG-KFMSIEAHNSEILCCDWSK---------------------------------------- 200 (311)
T ss_pred ecC---------------CC-ceeEEEeccceeEeecccc----------------------------------------
Confidence 652 11 2234677777777665420
Q ss_pred CCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCC-CeEEEEeCCC
Q 001109 536 GGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVT-LNLAIGSSSG 614 (1155)
Q Consensus 536 gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg-~~Lasgs~dG 614 (1155)
-+.++++||+.|+.||.||+..-. .++..+ .||..+|..|.|||.. ..||+++.|-
T Consensus 201 -------------y~~~vl~Tg~vd~~vr~wDir~~r-~pl~eL---------~gh~~AVRkvk~Sph~~~lLaSasYDm 257 (311)
T KOG0277|consen 201 -------------YNHNVLATGGVDNLVRGWDIRNLR-TPLFEL---------NGHGLAVRKVKFSPHHASLLASASYDM 257 (311)
T ss_pred -------------cCCcEEEecCCCceEEEEehhhcc-ccceee---------cCCceEEEEEecCcchhhHhhhccccc
Confidence 123489999999999999997654 334444 3899999999999975 4789999999
Q ss_pred eEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEec
Q 001109 615 LVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSN-FGARLAVGFECSQVAMLDI 688 (1155)
Q Consensus 615 ~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSp-dg~~LAsGs~Dg~V~lWDi 688 (1155)
++||||+..+... +.+...|+.=|..+.||+ ++.++|+.+.|+.+.||+.
T Consensus 258 T~riw~~~~~ds~------------------------~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 258 TVRIWDPERQDSA------------------------IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEecccccchhh------------------------hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999999864321 123345777788888987 5678999999999999984
No 95
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.82 E-value=2.2e-18 Score=188.73 Aligned_cols=284 Identities=15% Similarity=0.155 Sum_probs=214.6
Q ss_pred CEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeecc
Q 001109 85 AFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHS 163 (1155)
Q Consensus 85 ~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~ 163 (1155)
.++++...+....+++++.|.++.++|-.+.+.+.++++| ..|+++.++|+...+++++.|-.|+||..........
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~-- 298 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS-- 298 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc--
Confidence 5777777776678999999999999999999999999998 6899999999999999999999999996554321110
Q ss_pred ceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccccccccccc
Q 001109 164 PYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFS 243 (1155)
Q Consensus 164 ~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~ 243 (1155)
...+..+|.. +..+|.+ .
T Consensus 299 -------------------------------------------------~~~h~~~V~~-----ls~h~tg--------e 316 (506)
T KOG0289|consen 299 -------------------------------------------------SRPHEEPVTG-----LSLHPTG--------E 316 (506)
T ss_pred -------------------------------------------------ccccccccee-----eeeccCC--------c
Confidence 1113455666 9999985 5
Q ss_pred EEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEc
Q 001109 244 QLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYV 323 (1155)
Q Consensus 244 ~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~ 323 (1155)
++++++.||...+-|++++..+..... + ...-.+++++|+ |||-.|++|..
T Consensus 317 YllsAs~d~~w~Fsd~~~g~~lt~vs~-----~-----------------------~s~v~~ts~~fH-pDgLifgtgt~ 367 (506)
T KOG0289|consen 317 YLLSASNDGTWAFSDISSGSQLTVVSD-----E-----------------------TSDVEYTSAAFH-PDGLIFGTGTP 367 (506)
T ss_pred EEEEecCCceEEEEEccCCcEEEEEee-----c-----------------------cccceeEEeeEc-CCceEEeccCC
Confidence 699999999999999999998765211 0 013458999999 99999999999
Q ss_pred CCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccC
Q 001109 324 DGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNW 403 (1155)
Q Consensus 324 DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~ 403 (1155)
||.|+|||+.++.. +
T Consensus 368 d~~vkiwdlks~~~----------------------------------------------------------~------- 382 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTN----------------------------------------------------------V------- 382 (506)
T ss_pred CceEEEEEcCCccc----------------------------------------------------------c-------
Confidence 99999999875310 0
Q ss_pred CcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCccccc
Q 001109 404 SSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPT 483 (1155)
Q Consensus 404 ~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 483 (1155)
...|+
T Consensus 383 ---------------------------------------------------------------------------a~Fpg 387 (506)
T KOG0289|consen 383 ---------------------------------------------------------------------------AKFPG 387 (506)
T ss_pred ---------------------------------------------------------------------------ccCCC
Confidence 01223
Q ss_pred CCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcE
Q 001109 484 IEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGST 563 (1155)
Q Consensus 484 h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtV 563 (1155)
|.++|+.++| +.+|-+||++..|+.|
T Consensus 388 ht~~vk~i~F------------------------------------------------------sENGY~Lat~add~~V 413 (506)
T KOG0289|consen 388 HTGPVKAISF------------------------------------------------------SENGYWLATAADDGSV 413 (506)
T ss_pred CCCceeEEEe------------------------------------------------------ccCceEEEEEecCCeE
Confidence 6666665544 3445589999999999
Q ss_pred EEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEe
Q 001109 564 RIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHIL 643 (1155)
Q Consensus 564 rlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~ 643 (1155)
++||++....-..+.+ ....+|.++.|++.|++|++++.| |+||.+......
T Consensus 414 ~lwDLRKl~n~kt~~l----------~~~~~v~s~~fD~SGt~L~~~g~~--l~Vy~~~k~~k~---------------- 465 (506)
T KOG0289|consen 414 KLWDLRKLKNFKTIQL----------DEKKEVNSLSFDQSGTYLGIAGSD--LQVYICKKKTKS---------------- 465 (506)
T ss_pred EEEEehhhcccceeec----------cccccceeEEEcCCCCeEEeecce--eEEEEEeccccc----------------
Confidence 9999976542222222 122379999999999999999765 555555432211
Q ss_pred cCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEec
Q 001109 644 PGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDI 688 (1155)
Q Consensus 644 ~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi 688 (1155)
..++..+..|.+..+++.|..+.+++|+++.|..++|+-+
T Consensus 466 -----W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 466 -----WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred -----ceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 2234566789999999999999999999999999887753
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.81 E-value=1.6e-19 Score=196.78 Aligned_cols=197 Identities=15% Similarity=0.167 Sum_probs=155.7
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceE--EEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCC
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEG--LLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEAR 115 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~--~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~ 115 (1155)
..|.+.+..+-|-++...||+|+.|..|++|+..+... .-++ +..++|+.+.|.+++.++++++.|+.+++||+...
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL 251 (459)
T ss_pred hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence 57889999999999999999999999999999876542 2222 23568999999999999999999999999999999
Q ss_pred ceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccc
Q 001109 116 RITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKA 194 (1155)
Q Consensus 116 ~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~ 194 (1155)
++.++|.+| +.|+++.|..+...+++|+.|.+|+.|++... |....-
T Consensus 252 r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~--------~C~kt~------------------------ 299 (459)
T KOG0288|consen 252 RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA--------YCSKTV------------------------ 299 (459)
T ss_pred hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh--------heeccc------------------------
Confidence 999999998 89999999988777999999999999955431 111100
Q ss_pred ccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccc
Q 001109 195 AFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQ 274 (1155)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~ 274 (1155)
- ..+.+.. |...+ ..+++|..|+.|++||+++..+...-.
T Consensus 300 --------------l------~~S~cnD-----I~~~~----------~~~~SgH~DkkvRfwD~Rs~~~~~sv~----- 339 (459)
T KOG0288|consen 300 --------------L------PGSQCND-----IVCSI----------SDVISGHFDKKVRFWDIRSADKTRSVP----- 339 (459)
T ss_pred --------------c------ccccccc-----eEecc----------eeeeecccccceEEEeccCCceeeEee-----
Confidence 0 0111122 44433 248888999999999999888765411
Q ss_pred cccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 275 LKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
-.+.|+++..+ ++|..|.+.+.|.++.+.|+++
T Consensus 340 --------------------------~gg~vtSl~ls-~~g~~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 340 --------------------------LGGRVTSLDLS-MDGLELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred --------------------------cCcceeeEeec-cCCeEEeeecCCCceeeeeccc
Confidence 14579999999 9999999999999998888764
No 97
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.5e-18 Score=178.71 Aligned_cols=147 Identities=16% Similarity=0.139 Sum_probs=117.0
Q ss_pred CcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecC-CCeEEEEeCCCeEEEEEeccCccccc
Q 001109 551 ERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSV-TLNLAIGSSSGLVWLYNLIKSSNEET 629 (1155)
Q Consensus 551 ~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspd-g~~Lasgs~dG~V~lwd~~~~~~~~~ 629 (1155)
+++++++|.||+.|+||+..+.-.+. ++ .|+..|.+..|+.- -.+||+|+.|+.||.||++.-..
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~gk~~~--i~---------ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~--- 225 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPGKFMS--IE---------AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT--- 225 (311)
T ss_pred CCeEEEccCCceEEEEEecCCCceeE--EE---------eccceeEeecccccCCcEEEecCCCceEEEEehhhccc---
Confidence 45899999999999999976642211 22 57778999999874 56789999999999999987321
Q ss_pred eeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCee
Q 001109 630 LNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGA-RLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVL 708 (1155)
Q Consensus 630 ~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~-~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~ 708 (1155)
++..+.+|.-+|..|+|||... .||+++.|-+++|||...+.-+.. ....|+.-|.
T Consensus 226 ---------------------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e--~~~~HtEFv~ 282 (311)
T KOG0277|consen 226 ---------------------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIE--TVDHHTEFVC 282 (311)
T ss_pred ---------------------cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhh--hhhccceEEe
Confidence 2356689999999999999764 799999999999999985433221 2245888899
Q ss_pred EEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC
Q 001109 709 YLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 709 slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
.+.||. .++.++++.+-|+.++||+.
T Consensus 283 g~Dws~---------------------~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 283 GLDWSL---------------------FDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccccc---------------------ccCceeeecccccceeeecc
Confidence 999983 46778999999999999985
No 98
>PTZ00420 coronin; Provisional
Probab=99.81 E-value=6.9e-18 Score=203.11 Aligned_cols=210 Identities=12% Similarity=0.131 Sum_probs=149.3
Q ss_pred ccCCCCCceEEEEcCC-CCEEEEEEcCCeEEEEccCCce--------EE-EEcCCCCCEEEEEEEcCCcE-EEEEecCCe
Q 001109 38 HYGIPSTASILAFDHV-QSLLAIGTQDGRIKVIGGDNIE--------GL-LVSPKQLAFKHLEFLQNQGF-LVSISSGNE 106 (1155)
Q Consensus 38 ~~G~~~~vs~lafsp~-g~lLAsgs~DG~I~vw~~~~~~--------~~-~~~~~~~~V~~l~Fs~dg~~-LvS~s~Dg~ 106 (1155)
..||.+.|.+++|+|+ +.+||+|+.||+|+||+..... .+ ....|...|.+|+|+|++.. |++++.|++
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt 149 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF 149 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence 3699999999999997 7899999999999999976421 11 12346789999999999875 568899999
Q ss_pred EEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccc
Q 001109 107 IQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNH 186 (1155)
Q Consensus 107 I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~ 186 (1155)
|+|||+.+++.+..+..+..|++++|+|+|.+|++++.|+.|+||+... ++.. ..+..
T Consensus 150 IrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs--g~~i---~tl~g----------------- 207 (568)
T PTZ00420 150 VNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK--QEIA---SSFHI----------------- 207 (568)
T ss_pred EEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCC--CcEE---EEEec-----------------
Confidence 9999999998887777678899999999999999999999999996543 3222 00100
Q ss_pred ccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCC----eEEEEEccC-
Q 001109 187 IQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANG----LIILWDVSE- 261 (1155)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG----~I~lWd~~~- 261 (1155)
|.+.+....+....|+|+. ++|++++.|+ .|+|||++.
T Consensus 208 -----------------------------H~g~~~s~~v~~~~fs~d~--------~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 208 -----------------------------HDGGKNTKNIWIDGLGGDD--------NYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred -----------------------------ccCCceeEEEEeeeEcCCC--------CEEEEEEcCCCCccEEEEEECCCC
Confidence 0111111011113445653 4688877764 799999984
Q ss_pred CeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 262 DKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
++++..... .. +...+.. .|..++|.++++|..|++|++|++..+
T Consensus 251 ~~pl~~~~l-----d~-----------------------~~~~L~p-~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 251 TSALVTMSI-----DN-----------------------ASAPLIP-HYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCceEEEEe-----cC-----------------------CccceEE-eeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 455443111 00 1222222 333266999999999999999999765
No 99
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.81 E-value=3.1e-18 Score=207.10 Aligned_cols=330 Identities=16% Similarity=0.208 Sum_probs=205.8
Q ss_pred CCceEEEEcCCCCEEEEEE--cCCeEEEEccCCce-------------EEEEcCCCCCEEEEEEEcCCcEEEEEecCCeE
Q 001109 43 STASILAFDHVQSLLAIGT--QDGRIKVIGGDNIE-------------GLLVSPKQLAFKHLEFLQNQGFLVSISSGNEI 107 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs--~DG~I~vw~~~~~~-------------~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I 107 (1155)
..|.+++.+|+|..+|+|+ .||.++||..+..- .-....|.+.|.++.|+|||.+|++|++|..|
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v 93 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV 93 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE
Confidence 3488999999999999999 89999999754311 11223467889999999999999999999889
Q ss_pred EEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccc
Q 001109 108 QLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHI 187 (1155)
Q Consensus 108 ~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~ 187 (1155)
.||.... ....+. .|+..|.. +.+..+.. .
T Consensus 94 ~iW~~~~-~~~~~~-------------------fgs~g~~~-----~vE~wk~~-----------------~-------- 123 (942)
T KOG0973|consen 94 MIWERAE-IGSGTV-------------------FGSTGGAK-----NVESWKVV-----------------S-------- 123 (942)
T ss_pred EEeeecc-cCCccc-------------------cccccccc-----ccceeeEE-----------------E--------
Confidence 9998654 111110 11212211 11110100 0
Q ss_pred cccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEE
Q 001109 188 QREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLV 267 (1155)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~ 267 (1155)
++.+ |...|.. +.|+|++ .+|++++-|++|.|||..+.+.+.+
T Consensus 124 -~l~~-----------------------H~~DV~D-----v~Wsp~~--------~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 124 -ILRG-----------------------HDSDVLD-----VNWSPDD--------SLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred -EEec-----------------------CCCccce-----eccCCCc--------cEEEEecccceEEEEccccceeeee
Confidence 0001 3455666 9999974 5799999999999999999877765
Q ss_pred ecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCC
Q 001109 268 RGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSS 347 (1155)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~ 347 (1155)
. + +|...|-.+.|. |-|++||+-+.|++|++|.+.+-..... ..++..
T Consensus 167 l-------~-----------------------~H~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~dw~i~k~-It~pf~ 214 (942)
T KOG0973|consen 167 L-------R-----------------------GHQSLVKGVSWD-PIGKYFASQSDDRTLKVWRTSDWGIEKS-ITKPFE 214 (942)
T ss_pred e-------e-----------------------cccccccceEEC-CccCeeeeecCCceEEEEEcccceeeEe-eccchh
Confidence 2 1 257889999999 9999999999999999999766322111 000000
Q ss_pred CCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEE
Q 001109 348 TDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDM 427 (1155)
Q Consensus 348 ~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~ 427 (1155)
. .....-+..+.|+| +|..+++.-.-. ++.-.+
T Consensus 215 ~---------~~~~T~f~RlSWSP-------DG~~las~nA~n-------------------------------~~~~~~ 247 (942)
T KOG0973|consen 215 E---------SPLTTFFLRLSWSP-------DGHHLASPNAVN-------------------------------GGKSTI 247 (942)
T ss_pred h---------CCCcceeeecccCC-------CcCeecchhhcc-------------------------------CCccee
Confidence 0 01112356677875 444443331100 000000
Q ss_pred EEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHH
Q 001109 428 VLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELS 507 (1155)
Q Consensus 428 ~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~ 507 (1155)
.++ .. | .|. ....+-+|+.++++++|.|- +.
T Consensus 248 ~Ii---------------eR-~---tWk---------------------~~~~LvGH~~p~evvrFnP~---------lf 278 (942)
T KOG0973|consen 248 AII---------------ER-G---TWK---------------------VDKDLVGHSAPVEVVRFNPK---------LF 278 (942)
T ss_pred EEE---------------ec-C---Cce---------------------eeeeeecCCCceEEEEeChH---------Hh
Confidence 111 11 1 121 12345679999999999641 11
Q ss_pred HHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccc
Q 001109 508 KTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIR 587 (1155)
Q Consensus 508 ~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~ 587 (1155)
+ . + ...|...... ..-..+|+||+|++|-||.....+ |+.+++. +.
T Consensus 279 e---~--------~------------~~ng~~~~~~-----~~y~i~AvgSqDrSlSVW~T~~~R--Pl~vi~~-lf--- 324 (942)
T KOG0973|consen 279 E---R--------N------------NKNGTSTQPN-----CYYCIAAVGSQDRSLSVWNTALPR--PLFVIHN-LF--- 324 (942)
T ss_pred c---c--------c------------cccCCccCCC-----cceEEEEEecCCccEEEEecCCCC--chhhhhh-hh---
Confidence 0 0 0 0011110000 001278999999999999986554 5555431 11
Q ss_pred cCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 588 TATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 588 ~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
+.+|..++|+|||..|.+++.||+|.+++|+...
T Consensus 325 ----~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 325 ----NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred ----cCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 2489999999999999999999999999998764
No 100
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=7.1e-18 Score=177.53 Aligned_cols=154 Identities=19% Similarity=0.213 Sum_probs=119.1
Q ss_pred CCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccc
Q 001109 548 YLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNE 627 (1155)
Q Consensus 548 s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~ 627 (1155)
+|..++++|.+.|-+.|+||+... ...+.++. ||...|+++.|.-|.+ +++|++|.+|++||+......
T Consensus 323 HptQrLVvTsSrDtTFRLWDFRea-I~sV~VFQ---------GHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsp 391 (481)
T KOG0300|consen 323 HPTQRLVVTSSRDTTFRLWDFREA-IQSVAVFQ---------GHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSP 391 (481)
T ss_pred CCcceEEEEeccCceeEeccchhh-cceeeeec---------ccccceeEEEEecCCc-eeecCCCceEEEeeeccccCc
Confidence 466678999999999999999733 22223332 8999999999998875 799999999999999875321
Q ss_pred cceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEecc-CCCCCCC
Q 001109 628 ETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDS-LSNSNSP 706 (1155)
Q Consensus 628 ~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~-~~~h~~~ 706 (1155)
++++ ...+++.-|++|-.+..+|.--.+..|+|||+.+.++.+..+. -.||..-
T Consensus 392 ------------------------lATI-RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRM 446 (481)
T KOG0300|consen 392 ------------------------LATI-RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRM 446 (481)
T ss_pred ------------------------ceee-ecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccccee
Confidence 1222 2467899999999999999999999999999998765432211 1369999
Q ss_pred eeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC
Q 001109 707 VLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 707 V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t 757 (1155)
|.+++|.-. +--.-|++++.|..+.-|...+
T Consensus 447 V~c~AW~ee--------------------hp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 447 VTCCAWLEE--------------------HPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred eeeeecccc--------------------CcccccccccccceeeeeEecc
Confidence 999999721 2235599999999999998765
No 101
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=2.5e-18 Score=203.39 Aligned_cols=210 Identities=12% Similarity=0.171 Sum_probs=145.8
Q ss_pred cCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecC
Q 001109 419 ERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCR 498 (1155)
Q Consensus 419 ~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~ 498 (1155)
+|.+.++|+... ....|+..+-|.++++|+...-.++..+ .|...|||++|.|.
T Consensus 367 GHt~DILDlSWS-------Kn~fLLSSSMDKTVRLWh~~~~~CL~~F-----------------~HndfVTcVaFnPv-- 420 (712)
T KOG0283|consen 367 GHTADILDLSWS-------KNNFLLSSSMDKTVRLWHPGRKECLKVF-----------------SHNDFVTCVAFNPV-- 420 (712)
T ss_pred ccchhheecccc-------cCCeeEeccccccEEeecCCCcceeeEE-----------------ecCCeeEEEEeccc--
Confidence 345556665433 2337888889999999997643331111 27788999888432
Q ss_pred CCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeee
Q 001109 499 DGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHV 578 (1155)
Q Consensus 499 ~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~ 578 (1155)
|.+++++|+-||.||||++...+.. .
T Consensus 421 ---------------------------------------------------DDryFiSGSLD~KvRiWsI~d~~Vv---~ 446 (712)
T KOG0283|consen 421 ---------------------------------------------------DDRYFISGSLDGKVRLWSISDKKVV---D 446 (712)
T ss_pred ---------------------------------------------------CCCcEeecccccceEEeecCcCeeE---e
Confidence 3458999999999999999876521 1
Q ss_pred eCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecC
Q 001109 579 FGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVL 658 (1155)
Q Consensus 579 l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h 658 (1155)
+. .-..-|++++|+|||+..++|+.+|.+++|+..........+.- + +.+ .. ..|
T Consensus 447 W~---------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~--------~-~~~------Kk-~~~ 501 (712)
T KOG0283|consen 447 WN---------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR--------L-HNK------KK-KQG 501 (712)
T ss_pred eh---------hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe--------e-ccC------cc-ccC
Confidence 11 11147999999999999999999999999999876543222110 0 000 00 123
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCC
Q 001109 659 NSPICNLKFSNFGA-RLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTK 737 (1155)
Q Consensus 659 ~~~VtslafSpdg~-~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd 737 (1155)
. .||.+.|.|... .|.+.+.|..|+|+|.++..+++.+..+.. ...-.+-+|+ .|
T Consensus 502 ~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-~~SQ~~Asfs----------------------~D 557 (712)
T KOG0283|consen 502 K-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-TSSQISASFS----------------------SD 557 (712)
T ss_pred c-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-CCcceeeeEc----------------------cC
Confidence 3 899999997543 588889999999999977777654433222 2233556676 68
Q ss_pred CcEEEEEeCCceEEEEECCC
Q 001109 738 KETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 738 ~~~L~s~s~Dg~I~vwd~~t 757 (1155)
|+.|++|++|..|.||+...
T Consensus 558 gk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 558 GKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CCEEEEeecCceEEEEeCCC
Confidence 99999999999999999743
No 102
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=4.6e-18 Score=188.06 Aligned_cols=214 Identities=19% Similarity=0.230 Sum_probs=171.3
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCce
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRI 117 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~ 117 (1155)
.+|...+.++|.||||+|||+|..|..|.||+.++.+.+..+ .|++.|.+|+|-..-..|++++.|++|++|+++....
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 489999999999999999999999999999999998887663 5789999999998888999999999999999999988
Q ss_pred eeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccc
Q 001109 118 TSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAF 196 (1155)
Q Consensus 118 ~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~ 196 (1155)
+.++.+| +.|.++....-.+.+-+|+.|.++++|++..+. +++ |+-+
T Consensus 279 vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qli---frg~---------------------------- 326 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLI---FRGG---------------------------- 326 (479)
T ss_pred HHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eee---eeCC----------------------------
Confidence 8888776 889999998889999999999999999884332 332 1110
Q ss_pred ccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccc
Q 001109 197 NASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLK 276 (1155)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~ 276 (1155)
.+ .+.|++|-.+ ..+++|+.||.|.||++.+.+++++... -|
T Consensus 327 --------------------~~-----sidcv~~In~---------~HfvsGSdnG~IaLWs~~KKkplf~~~~----AH 368 (479)
T KOG0299|consen 327 --------------------EG-----SIDCVAFIND---------EHFVSGSDNGSIALWSLLKKKPLFTSRL----AH 368 (479)
T ss_pred --------------------CC-----CeeeEEEecc---------cceeeccCCceEEEeeecccCceeEeec----cc
Confidence 11 3445777665 4599999999999999999999876321 01
Q ss_pred cccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCC
Q 001109 277 TEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAAS 337 (1155)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~ 337 (1155)
.-++.. .++ .+...|++++-. |...++|+|+.+|.|++|-+.++..
T Consensus 369 gv~~~~-----------~~~---~~~~Witsla~i-~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 369 GVIPEL-----------DPV---NGNFWITSLAVI-PGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred cccCCc-----------ccc---ccccceeeeEec-ccCceEEecCCCCceEEEEecCCcc
Confidence 000000 000 124589999998 9999999999999999999988743
No 103
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.3e-17 Score=173.77 Aligned_cols=163 Identities=17% Similarity=0.171 Sum_probs=121.6
Q ss_pred cCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcc
Q 001109 547 DYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSN 626 (1155)
Q Consensus 547 ~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~ 626 (1155)
.+|.+..+++++.|++||+||++....+-+..+. .-...||+|.|..+|+|.....|+|||++.-..
T Consensus 108 ~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-------------~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk 174 (311)
T KOG1446|consen 108 VSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-------------GRPIAAFDPEGLIFALANGSELIKLYDLRSFDK 174 (311)
T ss_pred ecCCCCeEEecccCCeEEeeEecCCCCceEEecC-------------CCcceeECCCCcEEEEecCCCeEEEEEecccCC
Confidence 3455668999999999999999866543222221 234578999999999999988999999986321
Q ss_pred ccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCC
Q 001109 627 EETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSP 706 (1155)
Q Consensus 627 ~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~ 706 (1155)
+.+ ....+. ..-....+.|.|||||+++..++..+.+.+.|.-+|.++.+.....+-..-
T Consensus 175 -gPF--------~tf~i~-----------~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~ 234 (311)
T KOG1446|consen 175 -GPF--------TTFSIT-----------DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL 234 (311)
T ss_pred -CCc--------eeEccC-----------CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence 000 011110 133567889999999999999999999999999999987765432221111
Q ss_pred eeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeee
Q 001109 707 VLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 707 V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
=.+.+|+ ||++++++|+.||+|.||++++|+.+...
T Consensus 235 ~~~a~ft----------------------Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 235 PLSATFT----------------------PDSKFVLSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred ceeEEEC----------------------CCCcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence 1566777 99999999999999999999999988776
No 104
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3e-16 Score=186.28 Aligned_cols=551 Identities=17% Similarity=0.199 Sum_probs=304.1
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCc---EEEEEecCCeEEEEECCCC
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQG---FLVSISSGNEIQLWDLEAR 115 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~---~LvS~s~Dg~I~vWDl~t~ 115 (1155)
|....-..-.||+|++.|...+. ..|+||-..+++++..+ .+..++..+.+.|... ++++++.||+|++||...+
T Consensus 14 g~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~ 92 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG 92 (792)
T ss_pred cccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence 44334445679999999887765 58999999888887655 4688999999988654 6778999999999999999
Q ss_pred ceeeeecCCCceeEEEEecC----CCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccc
Q 001109 116 RITSTLPWESNITAFSVIFG----TSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREK 191 (1155)
Q Consensus 116 ~~~~~l~~~~~Vtsva~spd----~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~ 191 (1155)
.++.++..+.++.++.+.|. ...++.+.++-.+ +. ....++....+++-.. .
T Consensus 93 ~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~--~~--~~s~~~~~q~~~~~~~----------t---------- 148 (792)
T KOG1963|consen 93 ELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSI--LT--TFSKKLSKQSSRFVLA----------T---------- 148 (792)
T ss_pred EEEEEEecCCceeEEEechhHhCccceeEeeccccee--ee--ecccccccceeeeEee----------e----------
Confidence 99999987777776666431 1223333333221 10 0000000000000000 0
Q ss_pred cccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccc
Q 001109 192 GKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSK 271 (1155)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~ 271 (1155)
+.. ..+--...+..-.. |.+++.+. +.....+-.+.+|+..++. ..+...
T Consensus 149 -----------~~~---~~~d~~~~~~~~~~-----I~~~~~ge---------~~~i~~~~~~~~~~v~~~~--~~~~~~ 198 (792)
T KOG1963|consen 149 -----------FDS---AKGDFLKEHQEPKS-----IVDNNSGE---------FKGIVHMCKIHIYFVPKHT--KHTSSR 198 (792)
T ss_pred -----------ccc---cchhhhhhhcCCcc-----EEEcCCce---------EEEEEEeeeEEEEEecccc--eeeccc
Confidence 000 00000000111112 67777633 3444455577899988765 222221
Q ss_pred ccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcc
Q 001109 272 DLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFG 351 (1155)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~ 351 (1155)
+... +|...+++.+++ |.++++|+|..||.|.+|.--.... ......
T Consensus 199 ~~~~------------------------~Htf~~t~~~~s-pn~~~~Aa~d~dGrI~vw~d~~~~~--------~~~t~t 245 (792)
T KOG1963|consen 199 DITV------------------------HHTFNITCVALS-PNERYLAAGDSDGRILVWRDFGSSD--------DSETCT 245 (792)
T ss_pred hhhh------------------------hhcccceeEEec-cccceEEEeccCCcEEEEecccccc--------ccccce
Confidence 1111 256668999999 9999999999999999996332110 011223
Q ss_pred cccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEec
Q 001109 352 KLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLP 431 (1155)
Q Consensus 352 kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~ 431 (1155)
.+.|+ ..+|..+.|+. +|..+.+||.+ ..+.+|.++-..+ .+.-...+++.++.+.|
T Consensus 246 ~lHWH----~~~V~~L~fS~-------~G~~LlSGG~E----~VLv~Wq~~T~~k--------qfLPRLgs~I~~i~vS~ 302 (792)
T KOG1963|consen 246 LLHWH----HDEVNSLSFSS-------DGAYLLSGGRE----GVLVLWQLETGKK--------QFLPRLGSPILHIVVSP 302 (792)
T ss_pred EEEec----ccccceeEEec-------CCceEeecccc----eEEEEEeecCCCc--------ccccccCCeeEEEEEcC
Confidence 34443 35677777764 55667788774 6777776653321 22234567888888887
Q ss_pred CCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccC-CCcccCCccccc---CCCcceEEEEeeecCCCchhHHHH
Q 001109 432 NGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKIS-SSSLQYPMLIPT---IEPHMTVGKLCMVCRDGKLSVELS 507 (1155)
Q Consensus 432 ~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~-~~~~~~~~~~~~---h~~~It~~~~~~~~~~~~~s~~~~ 507 (1155)
++. ...+..+|++|++.....++....-..-.+- +.....+..+.. .++......+..- -+.+ -|+
T Consensus 303 ds~------~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~--~g~v--Q~y 372 (792)
T KOG1963|consen 303 DSD------LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH--PGHV--QFY 372 (792)
T ss_pred CCC------eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC--CceE--EEE
Confidence 654 6777788999988776554432211110000 000001111100 0111111111100 0000 000
Q ss_pred HHHH---hhccccCCCCCccccCCCccCcccCCCC---CcccccccCCcCcEEEEE--------ECCC--cEEEEeCCCC
Q 001109 508 KTLS---AAKVRASHTPSTQLTGSTTKWPLTGGIP---CQLHDAEDYLVERLYIAG--------YRDG--STRIWDATYP 571 (1155)
Q Consensus 508 ~~~~---~~~~~~~~~~s~~~~~~~~~w~l~gg~~---~~~~l~~~s~~~~lLaTg--------s~Dg--tVrlWD~~~~ 571 (1155)
+..+ ..+.+.+ .. -...|-.. ....+ +.+-.|.+++|+ ..|| .+|+|-....
T Consensus 373 dl~td~~i~~~~v~----------~~-n~~~~~~n~~v~itav-~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 373 DLYTDSTIYKLQVC----------DE-NYSDGDVNIQVGITAV-ARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred eccccceeeeEEEE----------ee-cccCCcceeEEeeeee-hhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 0000 0000000 00 00111111 11122 445558888887 3454 4788987654
Q ss_pred CeeeeeeeCCCcCccccCCCCCCeEEEEEecCCC--eEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCC
Q 001109 572 TLSLIHVFGSELPGIRTATESESVSALEFCSVTL--NLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGP 649 (1155)
Q Consensus 572 ~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~--~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~ 649 (1155)
. ..++|.+.+.. .|+..+.+.+|.+..+ ++++++.||.+++|-+...+.. .....+.
T Consensus 441 ~--kt~~L~T~I~~----PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~---------------~k~~s~W 499 (792)
T KOG1963|consen 441 S--KTFILNTKINN----PHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI---------------YKKSSNW 499 (792)
T ss_pred c--ceeEEEEEEec----CCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc---------------CcCccce
Confidence 3 12444443322 5777777777765433 7899999999999999764321 0011122
Q ss_pred ceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCC
Q 001109 650 QCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSD 729 (1155)
Q Consensus 650 ~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~ 729 (1155)
.|...-.-|..++++++||.||..||+|. |++|.+||..+...+....+ --..++..+.|.....
T Consensus 500 ~c~~i~sy~k~~i~a~~fs~dGslla~s~-~~~Itiwd~~~~~~l~~~~~--~~~~~~~~~~~~~~~~------------ 564 (792)
T KOG1963|consen 500 TCKAIGSYHKTPITALCFSQDGSLLAVSF-DDTITIWDYDTKNELLCTEG--SRNWPIAELLFTAQTQ------------ 564 (792)
T ss_pred EEeeeeccccCcccchhhcCCCcEEEEec-CCEEEEecCCChhhhhcccc--ccccchHhHhhhcccc------------
Confidence 33332233889999999999998777666 67899999998543322211 2345666666642111
Q ss_pred CCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeecc
Q 001109 730 INSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSIH 767 (1155)
Q Consensus 730 ~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~ 767 (1155)
.++ .++...-.++.+|++-++.+++.....
T Consensus 565 ------~~~--~~~~~~~~~l~~WNll~~~l~w~~s~~ 594 (792)
T KOG1963|consen 565 ------NDG--ALVHATQQRLSVWNLLSMSLIWNLSLS 594 (792)
T ss_pred ------ccc--ceeeccCceEehHhhhhhheecchhhh
Confidence 122 345566789999999999988866433
No 105
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=3.5e-18 Score=195.26 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=132.2
Q ss_pred CcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccC-CCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccc
Q 001109 549 LVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTA-TESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNE 627 (1155)
Q Consensus 549 ~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~-gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~ 627 (1155)
++..++|||+-|+.|.+||+..+.-+.+..++. +..-.+. |+..+|+++|..+.|..+|+|+..+.+++||..+.+.
T Consensus 128 k~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~-~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k- 205 (735)
T KOG0308|consen 128 KNNELVASGGLDRKIFLWDINTGTATLVASFNN-VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK- 205 (735)
T ss_pred cCceeEEecCCCccEEEEEccCcchhhhhhccc-cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccc-
Confidence 445589999999999999999874222222221 1111222 8899999999999999999999999999999988643
Q ss_pred cceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCe
Q 001109 628 ETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPV 707 (1155)
Q Consensus 628 ~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V 707 (1155)
+..+.||+..|.+|-.++||+++.+||.||+|+|||+...+|+++..+ |...|
T Consensus 206 ------------------------imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v---H~e~V 258 (735)
T KOG0308|consen 206 ------------------------IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV---HKEGV 258 (735)
T ss_pred ------------------------eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe---ccCce
Confidence 245679999999999999999999999999999999999999998766 99999
Q ss_pred eEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC
Q 001109 708 LYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 708 ~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t 757 (1155)
++|.-+ |+=..+++|+.|+.|..=|+.+
T Consensus 259 WaL~~~----------------------~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 259 WALQSS----------------------PSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred EEEeeC----------------------CCcceEEecCCCCcEEecccCC
Confidence 999987 5667899999999999999877
No 106
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.78 E-value=1.2e-17 Score=201.86 Aligned_cols=176 Identities=14% Similarity=0.134 Sum_probs=134.8
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
+++|++.+|++++.|++|-+||..+.. .+.+++ +|...|-.|.|+|-|++||+-+.|++|+||++.+..
T Consensus 136 ~Wsp~~~~lvS~s~DnsViiwn~~tF~--~~~vl~---------~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~ 204 (942)
T KOG0973|consen 136 NWSPDDSLLVSVSLDNSVIIWNAKTFE--LLKVLR---------GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG 204 (942)
T ss_pred ccCCCccEEEEecccceEEEEccccce--eeeeee---------cccccccceEECCccCeeeeecCCceEEEEEcccce
Confidence 677889999999999999999998764 344443 888999999999999999999999999999965521
Q ss_pred c-----------ccceeeec-----------------cCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCC-------
Q 001109 626 N-----------EETLNLVT-----------------ETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNF------- 670 (1155)
Q Consensus 626 ~-----------~~~~~~v~-----------------~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpd------- 670 (1155)
. .+..+|.+ ....++.+++- ++..+...|-||.+++++++|+|.
T Consensus 205 i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR-~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ 283 (942)
T KOG0973|consen 205 IEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER-GTWKVDKDLVGHSAPVEVVRFNPKLFERNNK 283 (942)
T ss_pred eeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec-CCceeeeeeecCCCceEEEEeChHHhccccc
Confidence 1 11112221 11122333332 445555678899999999999993
Q ss_pred ------CC----EEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcE
Q 001109 671 ------GA----RLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKET 740 (1155)
Q Consensus 671 ------g~----~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~ 740 (1155)
+. .+|+|+.|++|.||....++.++..+-+ ....|..++|+ |||-.
T Consensus 284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l--f~~SI~DmsWs----------------------pdG~~ 339 (942)
T KOG0973|consen 284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL--FNKSIVDMSWS----------------------PDGFS 339 (942)
T ss_pred cCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh--hcCceeeeeEc----------------------CCCCe
Confidence 11 6899999999999999877766543321 45789999999 89999
Q ss_pred EEEEeCCceEEEEECCC
Q 001109 741 LFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 741 L~s~s~Dg~I~vwd~~t 757 (1155)
|+++|.||+|.++.-+.
T Consensus 340 LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 340 LFACSLDGTVALIHFEE 356 (942)
T ss_pred EEEEecCCeEEEEEcch
Confidence 99999999999998654
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=9.6e-18 Score=177.64 Aligned_cols=248 Identities=14% Similarity=0.107 Sum_probs=173.9
Q ss_pred CCCcceeec-cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCce-EEEEcCCCCCEEEEEEEcCCc--EEEEEecCC
Q 001109 30 DFDPRVTLH-YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIE-GLLVSPKQLAFKHLEFLQNQG--FLVSISSGN 105 (1155)
Q Consensus 30 ~~~~~~~~~-~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~-~~~~~~~~~~V~~l~Fs~dg~--~LvS~s~Dg 105 (1155)
.+.+...|+ ..|.+.+++||.+ |.++|+|+.|-+|+|||.+... .-..+.|.+.|++|.|.++-. .|++|++||
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred ceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC
Confidence 344444454 5899999999997 7899999999999999986543 323345788999999999864 899999999
Q ss_pred eEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEec
Q 001109 106 EIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCP 184 (1155)
Q Consensus 106 ~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p 184 (1155)
.|.+|+...-.++.+++.| ++|+.++++|.+++.++-+.|+.++.|++=..++-.. .+-.. ....+.|.|
T Consensus 108 ~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v-----~~L~~----~at~v~w~~ 178 (362)
T KOG0294|consen 108 HIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV-----LNLKN----KATLVSWSP 178 (362)
T ss_pred cEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee-----eccCC----cceeeEEcC
Confidence 9999999999999999988 7899999999999999999999999997655432211 11110 122578888
Q ss_pred ccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeE
Q 001109 185 NHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKV 264 (1155)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~ 264 (1155)
.+.+.... ...-+.+|.+-....-........+ +..-+.. + ..|++|.+|+.|.+||-..+.+
T Consensus 179 ~Gd~F~v~---~~~~i~i~q~d~A~v~~~i~~~~r~-------l~~~~l~-~------~~L~vG~d~~~i~~~D~ds~~~ 241 (362)
T KOG0294|consen 179 QGDHFVVS---GRNKIDIYQLDNASVFREIENPKRI-------LCATFLD-G------SELLVGGDNEWISLKDTDSDTP 241 (362)
T ss_pred CCCEEEEE---eccEEEEEecccHhHhhhhhccccc-------eeeeecC-C------ceEEEecCCceEEEeccCCCcc
Confidence 77422210 0001222322211100000001111 2222322 3 5799999999999999988666
Q ss_pred EEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEE-EEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 265 VLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLC-WASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~-~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
..... .|+..|-++. +..|++.+|+|++.||.|++||++..
T Consensus 242 ~~~~~------------------------------AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 242 LTEFL------------------------------AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceeee------------------------------cchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 54311 2578888887 44478899999999999999999865
No 108
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.77 E-value=6.1e-16 Score=174.89 Aligned_cols=185 Identities=17% Similarity=0.211 Sum_probs=132.1
Q ss_pred CCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEE-EEEecCCeEEEEECCCCceeeeecCCCceeEEEE
Q 001109 54 QSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFL-VSISSGNEIQLWDLEARRITSTLPWESNITAFSV 132 (1155)
Q Consensus 54 g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~L-vS~s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~ 132 (1155)
+.++++++.||.|++|+..+.+.+........+..++|+|++..| ++++.++.|++||+.+++.+..+..+..+..+++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL 80 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence 467899999999999998776665554444457789999999877 4566789999999999988877776666788999
Q ss_pred ecCCCEEEEEe-CCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCC
Q 001109 133 IFGTSYMYIGD-EYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESG 211 (1155)
Q Consensus 133 spd~~~l~~G~-~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (1155)
+|+++.++++. .++.|++|++... +.. ..++
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~~--~~~---~~~~------------------------------------------- 112 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIETR--KVL---AEIP------------------------------------------- 112 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCC--eEE---eEee-------------------------------------------
Confidence 99999887654 5788888865442 211 0000
Q ss_pred cccccccccccceeeEEEEeecccccccccccEEEEEEcCC-eEEEEEccCCeEEEEecccccccccccccCCCCCCCCC
Q 001109 212 FIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANG-LIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHN 290 (1155)
Q Consensus 212 ~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG-~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (1155)
....+.+ ++++|++ +.++++..++ .+.+||..+++......
T Consensus 113 ----~~~~~~~-----~~~~~dg--------~~l~~~~~~~~~~~~~d~~~~~~~~~~~--------------------- 154 (300)
T TIGR03866 113 ----VGVEPEG-----MAVSPDG--------KIVVNTSETTNMAHFIDTKTYEIVDNVL--------------------- 154 (300)
T ss_pred ----CCCCcce-----EEECCCC--------CEEEEEecCCCeEEEEeCCCCeEEEEEE---------------------
Confidence 0111223 8899974 4677777765 56778998877654310
Q ss_pred CcccccccccccCCccEEEEEecCCCeEEEE-EcCCcEEEEEcCCC
Q 001109 291 LSETVSDNEQVEKEISSLCWASNDGSVLAVG-YVDGDILLWNLRAA 335 (1155)
Q Consensus 291 ~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg-~~DG~I~lWd~~s~ 335 (1155)
....+.+++|+ +||++|+++ ..||.|++||+.++
T Consensus 155 ----------~~~~~~~~~~s-~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 155 ----------VDQRPRFAEFT-ADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred ----------cCCCccEEEEC-CCCCEEEEEcCCCCEEEEEEcCcc
Confidence 02235678998 999988654 46999999998754
No 109
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.77 E-value=7e-16 Score=174.40 Aligned_cols=133 Identities=11% Similarity=0.097 Sum_probs=86.7
Q ss_pred cCCcCcEE-EEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEE-eCCCeEEEEEeccC
Q 001109 547 DYLVERLY-IAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIG-SSSGLVWLYNLIKS 624 (1155)
Q Consensus 547 ~s~~~~lL-aTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasg-s~dG~V~lwd~~~~ 624 (1155)
++++++.| +++..|+.|++||+.++... ..+.....+.. ........++|+|++++++++ +.++.|.+||..+.
T Consensus 164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~~--~~~~~~~~~~~--~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 164 FTADGKELWVSSEIGGTVSVIDVATRKVI--KKITFEIPGVH--PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred ECCCCCEEEEEcCCCCEEEEEEcCcceee--eeeeecccccc--cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 44555555 45556899999999877532 22211111100 001134578999999986554 45678999998754
Q ss_pred ccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEecCCccEEEEeccCCCC
Q 001109 625 SNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVG-FECSQVAMLDISTFSVLFITDSLSNS 703 (1155)
Q Consensus 625 ~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsG-s~Dg~V~lWDi~~~~~l~~~~~~~~h 703 (1155)
... .. ..+...+++++|+|+|++|+++ ..+|.|++||+++++++..... .
T Consensus 240 ~~~-------------------------~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~---~ 290 (300)
T TIGR03866 240 EVL-------------------------DY-LLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV---G 290 (300)
T ss_pred cEE-------------------------EE-EEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc---c
Confidence 311 11 1234578999999999999886 5689999999999998877653 2
Q ss_pred CCCeeEEEEe
Q 001109 704 NSPVLYLAVK 713 (1155)
Q Consensus 704 ~~~V~slafs 713 (1155)
...+.++|+
T Consensus 291 -~~~~~~~~~ 299 (300)
T TIGR03866 291 -RLPWGVVVR 299 (300)
T ss_pred -cccceeEeC
Confidence 344777775
No 110
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=4.8e-16 Score=176.11 Aligned_cols=163 Identities=16% Similarity=0.216 Sum_probs=121.3
Q ss_pred ccCCcCcEEEE--EECCCcEEEEeCCCCCeeeeeeeCCCc-CccccCCCCCCeEEEEEec-CCCeEEEEeCCCeEEEEEe
Q 001109 546 EDYLVERLYIA--GYRDGSTRIWDATYPTLSLIHVFGSEL-PGIRTATESESVSALEFCS-VTLNLAIGSSSGLVWLYNL 621 (1155)
Q Consensus 546 ~~s~~~~lLaT--gs~DgtVrlWD~~~~~l~~l~~l~~~~-~~i~~~gh~~~V~~lafsp-dg~~Lasgs~dG~V~lwd~ 621 (1155)
.|..+....|. .+.-|.|-|+++..+-- |...+ .++. ....|+.++|.| |...||+|++||.|++|.+
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGr-----LPDgv~p~l~---Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~ 657 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGR-----LPDGVMPGLF---NGTLVTDLHWDPFDDERLAVATDDGQINLWRL 657 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCC-----CCcccccccc---cCceeeecccCCCChHHeeecccCceEEEEEe
Confidence 34444444332 24468899999987531 11111 1111 124799999999 5678999999999999999
Q ss_pred ccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEecCCccEEEEeccC
Q 001109 622 IKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNF-GARLAVGFECSQVAMLDISTFSVLFITDSL 700 (1155)
Q Consensus 622 ~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpd-g~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~ 700 (1155)
..+...... -.+...+..|...|++|.|.|- ...||+++.|-+|+|||+++.+.... +
T Consensus 658 ~a~gl~e~~------------------~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~---l 716 (1012)
T KOG1445|consen 658 TANGLPENE------------------MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSR---L 716 (1012)
T ss_pred ccCCCCccc------------------CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhe---e
Confidence 875422110 0112456889999999999995 45899999999999999999876443 4
Q ss_pred CCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCc
Q 001109 701 SNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGH 759 (1155)
Q Consensus 701 ~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~ 759 (1155)
.||++.|.++||| |||+.+++.++||+|+|++..+++
T Consensus 717 ~gHtdqIf~~AWS----------------------pdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 717 VGHTDQIFGIAWS----------------------PDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred ccCcCceeEEEEC----------------------CCCcceeeeecCceEEEeCCCCCC
Confidence 6899999999999 999999999999999999987765
No 111
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.9e-17 Score=189.25 Aligned_cols=207 Identities=18% Similarity=0.197 Sum_probs=154.4
Q ss_pred EEEEcC-CCCEEEEEEcCCeEEEEccCCce------EEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCC--c
Q 001109 47 ILAFDH-VQSLLAIGTQDGRIKVIGGDNIE------GLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEAR--R 116 (1155)
Q Consensus 47 ~lafsp-~g~lLAsgs~DG~I~vw~~~~~~------~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~--~ 116 (1155)
++-.|+ .+++|.+|+.||.|++|+..... ++... .|..+|..+....++..|+|+|.|.+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 555664 56789999999999999864321 12222 36789999999999999999999999999999877 4
Q ss_pred eeeeecCC-CceeEEEE-ecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccc
Q 001109 117 ITSTLPWE-SNITAFSV-IFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKA 194 (1155)
Q Consensus 117 ~~~~l~~~-~~Vtsva~-spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~ 194 (1155)
+..+++.| ..|.|+++ -++...+|+|+-|+.|.+|++.....++...--.++..
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~------------------------ 164 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN------------------------ 164 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccc------------------------
Confidence 67778777 78999999 78888999999999999998886533222100000000
Q ss_pred ccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEE-EEeccccc
Q 001109 195 AFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVV-LVRGSKDL 273 (1155)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~-~~~~~~~~ 273 (1155)
..+. ....+ |++++.++. + ..+++|+..+.+++||-++++.+ +.+|
T Consensus 165 --------------sl~s--G~k~s-----iYSLA~N~t--~------t~ivsGgtek~lr~wDprt~~kimkLrG---- 211 (735)
T KOG0308|consen 165 --------------SLGS--GPKDS-----IYSLAMNQT--G------TIIVSGGTEKDLRLWDPRTCKKIMKLRG---- 211 (735)
T ss_pred --------------cCCC--CCccc-----eeeeecCCc--c------eEEEecCcccceEEeccccccceeeeec----
Confidence 0000 01223 444888876 3 57999999999999999987654 3332
Q ss_pred ccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCc
Q 001109 274 QLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAAST 338 (1155)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~ 338 (1155)
|...|.++..+ .||+++++|+.||+|++||+....+.
T Consensus 212 ---------------------------HTdNVr~ll~~-dDGt~~ls~sSDgtIrlWdLgqQrCl 248 (735)
T KOG0308|consen 212 ---------------------------HTDNVRVLLVN-DDGTRLLSASSDGTIRLWDLGQQRCL 248 (735)
T ss_pred ---------------------------cccceEEEEEc-CCCCeEeecCCCceEEeeecccccee
Confidence 57889999998 99999999999999999999876553
No 112
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=1.7e-16 Score=168.28 Aligned_cols=195 Identities=10% Similarity=0.127 Sum_probs=149.3
Q ss_pred CCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeee
Q 001109 42 PSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTL 121 (1155)
Q Consensus 42 ~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l 121 (1155)
...|+.|.|+|..+.|++++.||++++|+.+..+....+.+..|+..++|.++ ...++++.||.|++.|+.++....-.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~ig 91 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIG 91 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceeec
Confidence 35799999999999999999999999999988777777778899999999986 67999999999999999998766544
Q ss_pred cCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccccccee
Q 001109 122 PWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLL 201 (1155)
Q Consensus 122 ~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 201 (1155)
.+...|+|+...+....+++|+.|++|++|+ .+..... ...
T Consensus 92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD--~R~~~~~--------~~~----------------------------- 132 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWD--PRNKVVV--------GTF----------------------------- 132 (323)
T ss_pred cCCCceEEEEeeccCCeEEEcccCccEEEEe--ccccccc--------ccc-----------------------------
Confidence 5568999999999999999999999999994 4321110 000
Q ss_pred eecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccccccccccc
Q 001109 202 FYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVD 281 (1155)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~ 281 (1155)
. ...+|.+ +... + ++|++|+.|..|.+||++.-.....+..
T Consensus 133 -------d------~~kkVy~-----~~v~----g------~~LvVg~~~r~v~iyDLRn~~~~~q~re----------- 173 (323)
T KOG1036|consen 133 -------D------QGKKVYC-----MDVS----G------NRLVVGTSDRKVLIYDLRNLDEPFQRRE----------- 173 (323)
T ss_pred -------c------cCceEEE-----Eecc----C------CEEEEeecCceEEEEEcccccchhhhcc-----------
Confidence 0 0112222 4433 3 6899999999999999987654321100
Q ss_pred CCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcC
Q 001109 282 DPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLR 333 (1155)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~ 333 (1155)
..-.-.+.|+++. |++.=.|+++.||.|.+=.++
T Consensus 174 -----------------S~lkyqtR~v~~~-pn~eGy~~sSieGRVavE~~d 207 (323)
T KOG1036|consen 174 -----------------SSLKYQTRCVALV-PNGEGYVVSSIEGRVAVEYFD 207 (323)
T ss_pred -----------------ccceeEEEEEEEe-cCCCceEEEeecceEEEEccC
Confidence 0113458899998 888889999999998874443
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.76 E-value=8.2e-17 Score=176.56 Aligned_cols=149 Identities=19% Similarity=0.163 Sum_probs=118.1
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
+|+|||.++.+|..||.|||||+..+.- +.. +.+|+++|.+|+|+-+|-+||++.+|+.|++||++...
T Consensus 354 ~fHpDgLifgtgt~d~~vkiwdlks~~~--~a~---------Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTPDGVVKIWDLKSQTN--VAK---------FPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred eEcCCceEEeccCCCceEEEEEcCCccc--ccc---------CCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence 8999999999999999999999988761 122 34899999999999999999999999999999998754
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCC--ccEEEEeccCCC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFS-VLNSPICNLKFSNFGARLAVGFECSQVAMLDIST--FSVLFITDSLSN 702 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~-~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~--~~~l~~~~~~~~ 702 (1155)
.. .++. .-...|.++.|.+.|++|+.++.|=+|.+++-.+ .+++.+. ..
T Consensus 423 n~-------------------------kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~---~~ 474 (506)
T KOG0289|consen 423 NF-------------------------KTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL---AD 474 (506)
T ss_pred cc-------------------------ceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh---hh
Confidence 21 1111 1122689999999999999998887777776444 3444333 34
Q ss_pred CCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC
Q 001109 703 SNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 703 h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
|++..+.+.|. ...++|++++.|..+++...
T Consensus 475 ~sg~st~v~Fg----------------------~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 475 HSGLSTGVRFG----------------------EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccccceeeec----------------------ccceEEeeccchhheEEeec
Confidence 88888899997 56788999999999888643
No 114
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=99.76 E-value=7.1e-17 Score=187.58 Aligned_cols=292 Identities=19% Similarity=0.242 Sum_probs=170.4
Q ss_pred CeEEEEEecCCCeEEEEeCCCeEEEEEeccCcccc------ce--ee----eccCCceEEEecC------CCCCceeEEe
Q 001109 594 SVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEE------TL--NL----VTETGKEVHILPG------GDGPQCKALF 655 (1155)
Q Consensus 594 ~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~------~~--~~----v~~~~~~~~~~~~------~~g~~~~~~l 655 (1155)
.|+++.|+++...||+|...|.|.||++..+...+ .. .+ ..+.++.+..++. .+|+++...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 69999999999999999999999999998764322 00 00 1123455555554 3588888888
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCC-----CCCCCeeEEEEeecCCCCccccCCCCCCC
Q 001109 656 SVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLS-----NSNSPVLYLAVKSLSDTSNLTISPKDSDI 730 (1155)
Q Consensus 656 ~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~-----~h~~~V~slafs~~~~~~~~~~~~~~~~~ 730 (1155)
...+++|++++.|.-| ++|+|+++|.+.|.|++++.+++..++-. ..+..|+++.|+......
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~----------- 150 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG----------- 150 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT-----------
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC-----------
Confidence 8889999999998666 99999999999999999999999865422 134578999998433220
Q ss_pred CCCCCCCCcEEEEEeCCceEEEEECC--CCceeeee--ecccC-CCceEEEEEEeCCCCCCcccccccccCCCCCCCCCC
Q 001109 731 NSSNDTKKETLFFMTKDAHIVVCDST--TGHILFSR--SIHHQ-ESNAIYMCIIEGGNFFSETSSEKQSLNTPQNSKATS 805 (1155)
Q Consensus 731 ~~~~~pd~~~L~s~s~Dg~I~vwd~~--tG~~l~~~--~~~~~-~~~al~~~~ld~~~~~~~~~~e~~~~~~~~~~~~~~ 805 (1155)
..+-.-+|++|+..|++.++.+. .+.--... ..... .+.++.+..++....
T Consensus 151 ---D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G--------------------- 206 (395)
T PF08596_consen 151 ---DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTG--------------------- 206 (395)
T ss_dssp ---SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT----------------------
T ss_pred ---CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCC---------------------
Confidence 01234689999999999999653 21111111 11112 555666666643321
Q ss_pred CCCcCCCCCCCCCcccccccccccchhhhhccceEEEEEeccceeeeccccccccccceeEEeeccC-Cccce-eeeee-
Q 001109 806 EPDQTNANTGSDPVVAELETSTEATYLERIFEHLFVLLCYEDALWLYPLKSLIQGHTDSIHKVNLLK-PCCWT-TSFKK- 882 (1155)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llc~e~~~~~ysl~~~~qg~~~~~~k~k~~~-~~~~~-~~~~~- 882 (1155)
..-... ...-+ +.-++...+.|+++|+|+.+|+|++++. |..+|.. .. .+|.+ .+...
T Consensus 207 ----------~~a~At--~~~~~-~l~~g~~i~g~vVvvSe~~irv~~~~~~-----k~~~K~~-~~~~~~~~~~vv~~~ 267 (395)
T PF08596_consen 207 ----------ESALAT--ISAMQ-GLSKGISIPGYVVVVSESDIRVFKPPKS-----KGAHKSF-DDPFLCSSASVVPTI 267 (395)
T ss_dssp -----------B-B-B--HHHHH-GGGGT----EEEEEE-SSEEEEE-TT--------EEEEE--SS-EEEEEEEEEEEE
T ss_pred ----------CcccCc--hhHhh-ccccCCCcCcEEEEEcccceEEEeCCCC-----cccceee-ccccccceEEEEeec
Confidence 000000 00000 1223345588999999999999999985 4444444 43 24443 34322
Q ss_pred -CCceeEEEEEeecCcEEEeecCCcccccccccccccccccccCcceeeeecCCCcEEEEcCC
Q 001109 883 -NEKECGLVVLYQTGDIEIRVLPYLEVGGQTSLMSLLRWNYKTNMEETLCSSDSGEIVLVDFS 944 (1155)
Q Consensus 883 -~~~~~~l~~~~~~G~ieirslp~l~~~~~~s~~~~~~~~~~~~~~~~~~~s~~g~~~lvng~ 944 (1155)
..++++|++|+.+|.|++||||+|+.+++.+|...+ ..+..+..+++++|+++..+|.
T Consensus 268 ~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~----d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 268 SRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL----DSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp -EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-------HHHHTT-EE-TTS-EEEE-SS
T ss_pred ccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc----ccccccccEECCCCCEEEEeCc
Confidence 247999999999999999999999999988776322 3334567788999999888875
No 115
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.76 E-value=1.1e-16 Score=184.54 Aligned_cols=158 Identities=12% Similarity=0.099 Sum_probs=126.6
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceee
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNL 632 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~ 632 (1155)
.++|||.|.|+|+|-...-. +.+ .||+.+||++++-|++ .+++|+.|.+|++|.-.+
T Consensus 114 ~~iSgSWD~TakvW~~~~l~----~~l---------~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~--------- 170 (745)
T KOG0301|consen 114 TLISGSWDSTAKVWRIGELV----YSL---------QGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT--------- 170 (745)
T ss_pred ceEecccccceEEecchhhh----ccc---------CCcchheeeeeecCCC-cEEeccCcceeeeccCCc---------
Confidence 38999999999999764322 333 3899999999999998 789999999999997533
Q ss_pred eccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEE
Q 001109 633 VTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAV 712 (1155)
Q Consensus 633 v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slaf 712 (1155)
+..+|.+|++.|+.|++-|++ .+++++.||.|++||+ ++.+++..+ ||++-|.+++.
T Consensus 171 ------------------~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~---ghtn~vYsis~ 227 (745)
T KOG0301|consen 171 ------------------LLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMH---GHTNFVYSISM 227 (745)
T ss_pred ------------------hhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeee---ccceEEEEEEe
Confidence 235789999999999999986 4789999999999999 566776553 69999999996
Q ss_pred eecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeecccCCCceEEEEEEeCC
Q 001109 713 KSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSIHHQESNAIYMCIIEGG 782 (1155)
Q Consensus 713 s~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~~~~~~al~~~~ld~~ 782 (1155)
. +++..++++++|++++||+.. ++.+.. ........+..+++++
T Consensus 228 ~----------------------~~~~~Ivs~gEDrtlriW~~~--e~~q~I--~lPttsiWsa~~L~Ng 271 (745)
T KOG0301|consen 228 A----------------------LSDGLIVSTGEDRTLRIWKKD--ECVQVI--TLPTTSIWSAKVLLNG 271 (745)
T ss_pred c----------------------CCCCeEEEecCCceEEEeecC--ceEEEE--ecCccceEEEEEeeCC
Confidence 5 668889999999999999976 555554 2224466777776533
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=5.8e-17 Score=170.68 Aligned_cols=157 Identities=14% Similarity=0.210 Sum_probs=127.6
Q ss_pred CcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcccc
Q 001109 549 LVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEE 628 (1155)
Q Consensus 549 ~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~ 628 (1155)
..++.++||+.|.+..+||+.++.+ +..| .||....+..+-.|..+++++.+.|.+.|+|||...-
T Consensus 282 ~gg~Q~vTaSWDRTAnlwDVEtge~--v~~L---------tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI--- 347 (481)
T KOG0300|consen 282 AGGQQMVTASWDRTANLWDVETGEV--VNIL---------TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI--- 347 (481)
T ss_pred cCcceeeeeeccccceeeeeccCce--eccc---------cCcchhccccccCCcceEEEEeccCceeEeccchhhc---
Confidence 3455799999999999999999873 2333 3888999999999999999999999999999998521
Q ss_pred ceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCc-cEEEEeccCCCCCCCe
Q 001109 629 TLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTF-SVLFITDSLSNSNSPV 707 (1155)
Q Consensus 629 ~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~-~~l~~~~~~~~h~~~V 707 (1155)
+.+.+|.||+..|+++.|.-|. .+++|+.|.+|+|||+++. +.+.+++ ..+++
T Consensus 348 ---------------------~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR----tdS~~ 401 (481)
T KOG0300|consen 348 ---------------------QSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR----TDSPA 401 (481)
T ss_pred ---------------------ceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee----cCCcc
Confidence 2246789999999999999887 5889999999999999874 3444443 57889
Q ss_pred eEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeeccc
Q 001109 708 LYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSIHH 768 (1155)
Q Consensus 708 ~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~~ 768 (1155)
..++.+ ..+.+++.--....|+++|++ |..+...|-..
T Consensus 402 NRvavs----------------------~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrts 439 (481)
T KOG0300|consen 402 NRVAVS----------------------KGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTS 439 (481)
T ss_pred ceeEee----------------------cCCceEEeccCCceEEEEecC-CCccccCCccc
Confidence 999998 445678888888899999986 77777765433
No 117
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=1.1e-17 Score=179.89 Aligned_cols=284 Identities=12% Similarity=0.143 Sum_probs=190.2
Q ss_pred ccCCccEEEEEecCC-CeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCC
Q 001109 301 VEKEISSLCWASNDG-SVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCR 379 (1155)
Q Consensus 301 ~~~~V~sl~~s~pdG-~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~ 379 (1155)
|...|.|++=+ |.- ..+|+|+.||.|++||+....+... ...|..+|..|... .
T Consensus 65 HrdGV~~lakh-p~~ls~~aSGs~DG~VkiWnlsqR~~~~~----------------f~AH~G~V~Gi~v~--------~ 119 (433)
T KOG0268|consen 65 HRDGVSCLAKH-PNKLSTVASGSCDGEVKIWNLSQRECIRT----------------FKAHEGLVRGICVT--------Q 119 (433)
T ss_pred cccccchhhcC-cchhhhhhccccCceEEEEehhhhhhhhe----------------eecccCceeeEEec--------c
Confidence 57889999988 665 8899999999999999988655332 23577788888542 2
Q ss_pred ceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCC
Q 001109 380 GQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRF 459 (1155)
Q Consensus 380 ~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~ 459 (1155)
+. +++.|+| +.+..|.+++.. ..++ ...+.+.++-. +....++ ++.+.++.+||....
T Consensus 120 ~~-~~tvgdD----KtvK~wk~~~~p-~~ti--------lg~s~~~gIdh-------~~~~~~F-aTcGe~i~IWD~~R~ 177 (433)
T KOG0268|consen 120 TS-FFTVGDD----KTVKQWKIDGPP-LHTI--------LGKSVYLGIDH-------HRKNSVF-ATCGEQIDIWDEQRD 177 (433)
T ss_pred cc-eEEecCC----cceeeeeccCCc-ceee--------ecccccccccc-------ccccccc-cccCceeeecccccC
Confidence 33 4444444 677777665421 1111 11112222111 1111222 233346778885411
Q ss_pred CCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCC
Q 001109 460 SPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIP 539 (1155)
Q Consensus 460 ~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~ 539 (1155)
. ....+.+-...|.++.|.
T Consensus 178 ~----------------Pv~smswG~Dti~svkfN--------------------------------------------- 196 (433)
T KOG0268|consen 178 N----------------PVSSMSWGADSISSVKFN--------------------------------------------- 196 (433)
T ss_pred C----------------ccceeecCCCceeEEecC---------------------------------------------
Confidence 1 011222333444454442
Q ss_pred CcccccccCCcC-cEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEE
Q 001109 540 CQLHDAEDYLVE-RLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWL 618 (1155)
Q Consensus 540 ~~~~l~~~s~~~-~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~l 618 (1155)
|.. .+|+++..|++|-|+|+..... +..+... ..-+.|+|+|.+--+++|++|..++.
T Consensus 197 ---------pvETsILas~~sDrsIvLyD~R~~~P--l~KVi~~----------mRTN~IswnPeafnF~~a~ED~nlY~ 255 (433)
T KOG0268|consen 197 ---------PVETSILASCASDRSIVLYDLRQASP--LKKVILT----------MRTNTICWNPEAFNFVAANEDHNLYT 255 (433)
T ss_pred ---------CCcchheeeeccCCceEEEecccCCc--cceeeee----------ccccceecCccccceeecccccccee
Confidence 221 2688898999999999987762 2222110 14568999998888999999999999
Q ss_pred EEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEE---E
Q 001109 619 YNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVL---F 695 (1155)
Q Consensus 619 wd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l---~ 695 (1155)
||+..-.. ++.++.+|.++|.+|.|||-|+-+++||.|.+|+|+.+..+... +
T Consensus 256 ~DmR~l~~------------------------p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh 311 (433)
T KOG0268|consen 256 YDMRNLSR------------------------PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH 311 (433)
T ss_pred hhhhhhcc------------------------cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh
Confidence 99976322 23466899999999999999999999999999999999875432 2
Q ss_pred EeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeee
Q 001109 696 ITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 696 ~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
+.+ =..|.++.|| .|.+++++||.|+.|++|-..-.+.++..
T Consensus 312 tkR-----Mq~V~~Vk~S----------------------~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 312 TKR-----MQHVFCVKYS----------------------MDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred Hhh-----hheeeEEEEe----------------------ccccEEEecCCCcceeeeecchhhhcCCC
Confidence 211 1358999999 78899999999999999998776666655
No 118
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=3.4e-16 Score=165.15 Aligned_cols=268 Identities=16% Similarity=0.249 Sum_probs=177.2
Q ss_pred eEEEEeecccccccccccEEEEEEcCCeEEEEEccCC-eEEEEecccccccccccccCCCCCCCCCCcccccccccccCC
Q 001109 226 EIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSED-KVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKE 304 (1155)
Q Consensus 226 ~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1155)
.+++|+|... ..+++++-||+||+|+++.. ..+.. ... .|.++
T Consensus 31 S~l~FSP~~~-------~~~~A~SWD~tVR~wevq~~g~~~~k--------------------------a~~---~~~~P 74 (347)
T KOG0647|consen 31 SALAFSPQAD-------NLLAAGSWDGTVRIWEVQNSGQLVPK--------------------------AQQ---SHDGP 74 (347)
T ss_pred heeEeccccC-------ceEEecccCCceEEEEEecCCcccch--------------------------hhh---ccCCC
Confidence 3499999654 46779999999999999763 33211 000 15889
Q ss_pred ccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEE
Q 001109 305 ISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFV 384 (1155)
Q Consensus 305 V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv 384 (1155)
|.++||+ .||+.+++|+.|+.+++||+.++.... .+.|..||..++|.... ...+++
T Consensus 75 vL~v~Ws-ddgskVf~g~~Dk~~k~wDL~S~Q~~~-----------------v~~Hd~pvkt~~wv~~~-----~~~cl~ 131 (347)
T KOG0647|consen 75 VLDVCWS-DDGSKVFSGGCDKQAKLWDLASGQVSQ-----------------VAAHDAPVKTCHWVPGM-----NYQCLV 131 (347)
T ss_pred eEEEEEc-cCCceEEeeccCCceEEEEccCCCeee-----------------eeecccceeEEEEecCC-----CcceeE
Confidence 9999999 999999999999999999999985422 13578899999997521 122233
Q ss_pred ecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCccc
Q 001109 385 FGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKS 464 (1155)
Q Consensus 385 ~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~ 464 (1155)
.| +-|.+|++||.+...
T Consensus 132 TG-----------------------------------------------------------SWDKTlKfWD~R~~~---- 148 (347)
T KOG0647|consen 132 TG-----------------------------------------------------------SWDKTLKFWDTRSSN---- 148 (347)
T ss_pred ec-----------------------------------------------------------ccccceeecccCCCC----
Confidence 33 345577888865211
Q ss_pred ccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccc
Q 001109 465 QEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHD 544 (1155)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l 544 (1155)
.+..+.+ +.. .+
T Consensus 149 ----------------------pv~t~~L---PeR---------------vY---------------------------- 160 (347)
T KOG0647|consen 149 ----------------------PVATLQL---PER---------------VY---------------------------- 160 (347)
T ss_pred ----------------------eeeeeec---cce---------------ee----------------------------
Confidence 0111111 000 00
Q ss_pred cccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccC
Q 001109 545 AEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKS 624 (1155)
Q Consensus 545 ~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~ 624 (1155)
+..-...+++.|..++.|.+++++.+.. .++.. + ..-.--+.||+.-+|....|.|+-.|.|-+..++..
T Consensus 161 -a~Dv~~pm~vVata~r~i~vynL~n~~t----e~k~~-~----SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 161 -AADVLYPMAVVATAERHIAVYNLENPPT----EFKRI-E----SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred -ehhccCceeEEEecCCcEEEEEcCCCcc----hhhhh-c----CcccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence 0000012567777899999999977641 11110 0 011225789999999988899999999999999874
Q ss_pred ccccceeeeccCCceEEEecCCCCCceeEEeecCC---CCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCC
Q 001109 625 SNEETLNLVTETGKEVHILPGGDGPQCKALFSVLN---SPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLS 701 (1155)
Q Consensus 625 ~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~---~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~ 701 (1155)
....++.| +|...-..-. -+|.+|+|.|....|||++.||++.+||-+....|... .
T Consensus 231 ~~~~nFtF-----------------kCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s---~ 290 (347)
T KOG0647|consen 231 NPKDNFTF-----------------KCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS---E 290 (347)
T ss_pred CccCceeE-----------------EEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc---C
Confidence 32222211 1211100011 25889999999999999999999999998877666543 3
Q ss_pred CCCCCeeEEEEe
Q 001109 702 NSNSPVLYLAVK 713 (1155)
Q Consensus 702 ~h~~~V~slafs 713 (1155)
.|..||+..+|.
T Consensus 291 ~~~qpItcc~fn 302 (347)
T KOG0647|consen 291 THPQPITCCSFN 302 (347)
T ss_pred cCCCccceeEec
Confidence 489999999998
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=6.5e-17 Score=165.87 Aligned_cols=264 Identities=12% Similarity=0.079 Sum_probs=182.4
Q ss_pred ccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCc
Q 001109 301 VEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRG 380 (1155)
Q Consensus 301 ~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~ 380 (1155)
|+.-|-.+... --|++|||++.|++|+|+.++..... ++.....+|..||..+.|.. +.-|
T Consensus 10 H~D~IHda~lD-yygkrlATcsSD~tVkIf~v~~n~~s-------------~ll~~L~Gh~GPVwqv~wah-----Pk~G 70 (299)
T KOG1332|consen 10 HEDMIHDAQLD-YYGKRLATCSSDGTVKIFEVRNNGQS-------------KLLAELTGHSGPVWKVAWAH-----PKFG 70 (299)
T ss_pred hhhhhhHhhhh-hhcceeeeecCCccEEEEEEcCCCCc-------------eeeeEecCCCCCeeEEeecc-----cccC
Confidence 45556665554 56999999999999999998865321 12222347888999888853 2333
Q ss_pred eEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCC
Q 001109 381 QLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFS 460 (1155)
Q Consensus 381 ~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~ 460 (1155)
.+ ++..+-+|++.+|......
T Consensus 71 ~i-----------------------------------------------------------LAScsYDgkVIiWke~~g~ 91 (299)
T KOG1332|consen 71 TI-----------------------------------------------------------LASCSYDGKVIIWKEENGR 91 (299)
T ss_pred cE-----------------------------------------------------------eeEeecCceEEEEecCCCc
Confidence 33 3334456777777754210
Q ss_pred CcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCC
Q 001109 461 PKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPC 540 (1155)
Q Consensus 461 ~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~ 540 (1155)
|. -......|...|+++++.+
T Consensus 92 -----------w~---k~~e~~~h~~SVNsV~wap--------------------------------------------- 112 (299)
T KOG1332|consen 92 -----------WT---KAYEHAAHSASVNSVAWAP--------------------------------------------- 112 (299)
T ss_pred -----------hh---hhhhhhhhcccceeecccc---------------------------------------------
Confidence 11 1123445777777765521
Q ss_pred cccccccCCcCcEEEEEECCCcEEEEeCCCC-CeeeeeeeCCCcCccccCCCCCCeEEEEEecC---C-----------C
Q 001109 541 QLHDAEDYLVERLYIAGYRDGSTRIWDATYP-TLSLIHVFGSELPGIRTATESESVSALEFCSV---T-----------L 605 (1155)
Q Consensus 541 ~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~-~l~~l~~l~~~~~~i~~~gh~~~V~~lafspd---g-----------~ 605 (1155)
+..|-+|++|+.||+|++.++... .-. ... ....|+..|++++++|- | +
T Consensus 113 -------heygl~LacasSDG~vsvl~~~~~g~w~-t~k--------i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~k 176 (299)
T KOG1332|consen 113 -------HEYGLLLACASSDGKVSVLTYDSSGGWT-TSK--------IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVK 176 (299)
T ss_pred -------cccceEEEEeeCCCcEEEEEEcCCCCcc-chh--------hhhccccccceeeecCcCCCccccccCcccccc
Confidence 122338999999999999987654 210 000 11268889999999997 5 5
Q ss_pred eEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCC----CEEEEEeCCC
Q 001109 606 NLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFG----ARLAVGFECS 681 (1155)
Q Consensus 606 ~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg----~~LAsGs~Dg 681 (1155)
.||+|+.|..|+||+++...... ..+|.+|.+.|+.||+.|.- .+||+++.||
T Consensus 177 rlvSgGcDn~VkiW~~~~~~w~~-----------------------e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg 233 (299)
T KOG1332|consen 177 RLVSGGCDNLVKIWKFDSDSWKL-----------------------ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG 233 (299)
T ss_pred eeeccCCccceeeeecCCcchhh-----------------------hhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence 69999999999999998753211 13578999999999999974 4699999999
Q ss_pred cEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC-Cce
Q 001109 682 QVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT-GHI 760 (1155)
Q Consensus 682 ~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t-G~~ 760 (1155)
+|.||-.....--.+.-++.....+|++++|| +.|++|+++..|..|.+|-.+. |+-
T Consensus 234 ~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS----------------------~sGn~LaVs~GdNkvtlwke~~~Gkw 291 (299)
T KOG1332|consen 234 TVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWS----------------------LSGNILAVSGGDNKVTLWKENVDGKW 291 (299)
T ss_pred cEEEEEecCccCcccccccccCCcceEEEEEe----------------------ccccEEEEecCCcEEEEEEeCCCCcE
Confidence 99999776322222222344567899999999 6789999999999999997653 554
Q ss_pred ee
Q 001109 761 LF 762 (1155)
Q Consensus 761 l~ 762 (1155)
+.
T Consensus 292 ~~ 293 (299)
T KOG1332|consen 292 EE 293 (299)
T ss_pred EE
Confidence 43
No 120
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.74 E-value=2.8e-16 Score=165.78 Aligned_cols=277 Identities=14% Similarity=0.202 Sum_probs=180.5
Q ss_pred CCCCceEEEEcC-CCCEEEEEEcCCeEEEEccCCc-eE--EEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCc
Q 001109 41 IPSTASILAFDH-VQSLLAIGTQDGRIKVIGGDNI-EG--LLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARR 116 (1155)
Q Consensus 41 ~~~~vs~lafsp-~g~lLAsgs~DG~I~vw~~~~~-~~--~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~ 116 (1155)
-..+|++|+||| ...+||.|+.||+||+|+.... .. .....+.++|.+++|+.||..+++++.|+.+++|||.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 346799999999 4567889999999999997652 22 1223468899999999999999999999999999999997
Q ss_pred eeeeecCCCceeEEEEecCCC--EEEEEeCCCcEEEEEecCCCceeeccceeccCCcee--eecee-EeeEecccccccc
Q 001109 117 ITSTLPWESNITAFSVIFGTS--YMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIE--VFNHL-LLEFCPNHIQREK 191 (1155)
Q Consensus 117 ~~~~l~~~~~Vtsva~spd~~--~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~--~~~~~-~l~~~p~~~~~~~ 191 (1155)
....-.+.++|.++.|.+... .|++|+-|.+|++|+ ++..+.+ ....+|..... +..++ .++..
T Consensus 106 ~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD--~R~~~pv-~t~~LPeRvYa~Dv~~pm~vVata-------- 174 (347)
T KOG0647|consen 106 VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD--TRSSNPV-ATLQLPERVYAADVLYPMAVVATA-------- 174 (347)
T ss_pred eeeeeecccceeEEEEecCCCcceeEecccccceeecc--cCCCCee-eeeeccceeeehhccCceeEEEec--------
Confidence 665444558999999988766 899999999999994 4432221 00112221110 00111 11111
Q ss_pred cccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccc
Q 001109 192 GKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSK 271 (1155)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~ 271 (1155)
...+..|.+...-. +.+...+-..+.+.+|+..++.++ .++|+-.|.+.+..+..+..... +
T Consensus 175 -----~r~i~vynL~n~~t--e~k~~~SpLk~Q~R~va~f~d~~~--------~alGsiEGrv~iq~id~~~~~~n---F 236 (347)
T KOG0647|consen 175 -----ERHIAVYNLENPPT--EFKRIESPLKWQTRCVACFQDKDG--------FALGSIEGRVAIQYIDDPNPKDN---F 236 (347)
T ss_pred -----CCcEEEEEcCCCcc--hhhhhcCcccceeeEEEEEecCCc--------eEeeeecceEEEEecCCCCccCc---e
Confidence 11445555532211 111222223346777999988765 69999999999999887633111 0
Q ss_pred ccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcc
Q 001109 272 DLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFG 351 (1155)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~ 351 (1155)
.+..|..... . . +.--.|.+++|+ |--..|+|++.||++.+||-.......
T Consensus 237 tFkCHR~~~~------~---~-------~~VYaVNsi~Fh-P~hgtlvTaGsDGtf~FWDkdar~kLk------------ 287 (347)
T KOG0647|consen 237 TFKCHRSTNS------V---N-------DDVYAVNSIAFH-PVHGTLVTAGSDGTFSFWDKDARTKLK------------ 287 (347)
T ss_pred eEEEeccCCC------C---C-------CceEEecceEee-cccceEEEecCCceEEEecchhhhhhh------------
Confidence 0111211000 0 0 013468999999 888889999999999999976543221
Q ss_pred cccccCCCCCccEEEEEecccCCCCCCCceEEEec
Q 001109 352 KLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFG 386 (1155)
Q Consensus 352 kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~g 386 (1155)
.+..+..||....|.. +|.+|++.
T Consensus 288 ----~s~~~~qpItcc~fn~-------~G~ifaYA 311 (347)
T KOG0647|consen 288 ----TSETHPQPITCCSFNR-------NGSIFAYA 311 (347)
T ss_pred ----ccCcCCCccceeEecC-------CCCEEEEE
Confidence 2345667888776653 56666665
No 121
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=3.5e-16 Score=163.94 Aligned_cols=174 Identities=17% Similarity=0.270 Sum_probs=126.7
Q ss_pred cCCCCcceeeccCCCCCceEEEEcCC-CCEEEEEEcCCeEEEEccCCce------------EEEEc----CCCCCEEEEE
Q 001109 28 SKDFDPRVTLHYGIPSTASILAFDHV-QSLLAIGTQDGRIKVIGGDNIE------------GLLVS----PKQLAFKHLE 90 (1155)
Q Consensus 28 ~~~~~~~~~~~~G~~~~vs~lafsp~-g~lLAsgs~DG~I~vw~~~~~~------------~~~~~----~~~~~V~~l~ 90 (1155)
.-.+++++-+..-|.+.|++|.++|. |+++.+|+.||.|-|||..+.. ++... .|+-.|..+.
T Consensus 29 ~L~Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~ 108 (397)
T KOG4283|consen 29 SLQLNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAI 108 (397)
T ss_pred eeeccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeE
Confidence 33566677777788899999999995 7999999999999999986542 11111 2455888888
Q ss_pred EEc-CCcEEEEEecCCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccC
Q 001109 91 FLQ-NQGFLVSISSGNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPK 169 (1155)
Q Consensus 91 Fs~-dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~ 169 (1155)
|-| |.+.+.+++.|.+++|||..|-+....|..++.|.+-++
T Consensus 109 WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYsham------------------------------------- 151 (397)
T KOG4283|consen 109 WYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAM------------------------------------- 151 (397)
T ss_pred EeeecCceeecccccceEEEeecccceeeEEeecCceeehhhc-------------------------------------
Confidence 888 557888999999999999887665544433322111111
Q ss_pred CceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEE
Q 001109 170 DVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVY 249 (1155)
Q Consensus 170 ~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~ 249 (1155)
++ ++.+ . -++++|+
T Consensus 152 ------------------------------------------------Sp--------~a~s----H------cLiA~gt 165 (397)
T KOG4283|consen 152 ------------------------------------------------SP--------MAMS----H------CLIAAGT 165 (397)
T ss_pred ------------------------------------------------Ch--------hhhc----c------eEEEEec
Confidence 01 1111 1 3588899
Q ss_pred cCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEE
Q 001109 250 ANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILL 329 (1155)
Q Consensus 250 ~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~l 329 (1155)
.+-.|+|-|++.|..-.... +|...|.++.|++...-.||||+.||.|++
T Consensus 166 r~~~VrLCDi~SGs~sH~Ls------------------------------GHr~~vlaV~Wsp~~e~vLatgsaDg~irl 215 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTLS------------------------------GHRDGVLAVEWSPSSEWVLATGSADGAIRL 215 (397)
T ss_pred CCCcEEEEeccCCcceeeec------------------------------cccCceEEEEeccCceeEEEecCCCceEEE
Confidence 99999999999998876522 258899999999334457899999999999
Q ss_pred EEcCC
Q 001109 330 WNLRA 334 (1155)
Q Consensus 330 Wd~~s 334 (1155)
||++.
T Consensus 216 WDiRr 220 (397)
T KOG4283|consen 216 WDIRR 220 (397)
T ss_pred EEeec
Confidence 99863
No 122
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.4e-16 Score=176.19 Aligned_cols=296 Identities=16% Similarity=0.175 Sum_probs=195.6
Q ss_pred cCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccccccee
Q 001109 122 PWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLL 201 (1155)
Q Consensus 122 ~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 201 (1155)
+.++.|+++.|+|....|++++-||+++++.+|.....+++.-+ +
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~------l----------------------------- 255 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH------L----------------------------- 255 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee------e-----------------------------
Confidence 34689999999999999999999999999999876543321100 0
Q ss_pred eecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccccccccccc
Q 001109 202 FYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVD 281 (1155)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~ 281 (1155)
...++.. ..|.|++. .++++++....+..||+.+.++.++...
T Consensus 256 --------------~~fPi~~-----a~f~p~G~-------~~i~~s~rrky~ysyDle~ak~~k~~~~----------- 298 (514)
T KOG2055|consen 256 --------------EKFPIQK-----AEFAPNGH-------SVIFTSGRRKYLYSYDLETAKVTKLKPP----------- 298 (514)
T ss_pred --------------ccCccce-----eeecCCCc-------eEEEecccceEEEEeeccccccccccCC-----------
Confidence 0233334 89999854 4799999999999999999888765111
Q ss_pred CCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCC
Q 001109 282 DPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRR 361 (1155)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~ 361 (1155)
.|+ ++..+.....+ +++++||..+..|.|.+-...++....
T Consensus 299 -----~g~-----------e~~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~eli~---------------------- 339 (514)
T KOG2055|consen 299 -----YGV-----------EEKSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTKELIT---------------------- 339 (514)
T ss_pred -----CCc-----------ccchhheeEec-CCCCeEEEcccCceEEeehhhhhhhhh----------------------
Confidence 011 24556677777 999999999999999997665543211
Q ss_pred ccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCcee
Q 001109 362 LPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTL 441 (1155)
Q Consensus 362 ~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~ 441 (1155)
++ ...|.+.++++..+ ...
T Consensus 340 ----s~---------------------------------------------------KieG~v~~~~fsSd------sk~ 358 (514)
T KOG2055|consen 340 ----SF---------------------------------------------------KIEGVVSDFTFSSD------SKE 358 (514)
T ss_pred ----ee---------------------------------------------------eeccEEeeEEEecC------CcE
Confidence 11 01122344444422 246
Q ss_pred EEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCC
Q 001109 442 PCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTP 521 (1155)
Q Consensus 442 l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 521 (1155)
+++.+..|++++||+... .|..-..+
T Consensus 359 l~~~~~~GeV~v~nl~~~-----------------------------~~~~rf~D------------------------- 384 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQN-----------------------------SCLHRFVD------------------------- 384 (514)
T ss_pred EEEEcCCceEEEEecCCc-----------------------------ceEEEEee-------------------------
Confidence 777788899999997521 01111111
Q ss_pred CccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCC----CeeeeeeeCCCcCccccCCCCCCeEE
Q 001109 522 STQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYP----TLSLIHVFGSELPGIRTATESESVSA 597 (1155)
Q Consensus 522 s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~----~l~~l~~l~~~~~~i~~~gh~~~V~~ 597 (1155)
.|++. ..++ +.++++++||+||..|.|.|||..+- ...|+..+. .-...|++
T Consensus 385 -------------~G~v~-gts~-~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d---------NLtt~Its 440 (514)
T KOG2055|consen 385 -------------DGSVH-GTSL-CISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD---------NLTTAITS 440 (514)
T ss_pred -------------cCccc-eeee-eecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh---------hhheeeee
Confidence 11111 0123 66788999999999999999996432 222222221 11237999
Q ss_pred EEEecCCCeEEEEeC--CCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEE
Q 001109 598 LEFCSVTLNLAIGSS--SGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLA 675 (1155)
Q Consensus 598 lafspdg~~Lasgs~--dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LA 675 (1155)
|.|+||++.||.++. +..+|+-.+..-..-.++ . +....-+.|+||+|||.|.+||
T Consensus 441 l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNf-------------P---------~~n~~vg~vtc~aFSP~sG~lA 498 (514)
T KOG2055|consen 441 LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNF-------------P---------TSNTKVGHVTCMAFSPNSGYLA 498 (514)
T ss_pred eeeCcchhhhhhhhhccccceEEEeccceeeeccC-------------C---------CCCCcccceEEEEecCCCceEE
Confidence 999999999998875 456777666542110000 0 0012335699999999999999
Q ss_pred EEeCCCcEEEEecC
Q 001109 676 VGFECSQVAMLDIS 689 (1155)
Q Consensus 676 sGs~Dg~V~lWDi~ 689 (1155)
+|..+|.|.||.+.
T Consensus 499 vGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 499 VGNEAGRVHLFKLH 512 (514)
T ss_pred eecCCCceeeEeec
Confidence 99999999999763
No 123
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=6.3e-16 Score=164.03 Aligned_cols=113 Identities=13% Similarity=0.124 Sum_probs=84.2
Q ss_pred CeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeec---CCCCeEEEEEcCC
Q 001109 594 SVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSV---LNSPICNLKFSNF 670 (1155)
Q Consensus 594 ~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~---h~~~VtslafSpd 670 (1155)
.+.||++-|++.=.|+++-||.|.+=.++.......-. ..|.|...-.. .--+|.+|+|+|-
T Consensus 179 qtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skk---------------yaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 179 QTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKK---------------YAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred EEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhc---------------eeEEeeecccCCceEEEEeceeEeccc
Confidence 67899999988889999999999988777652110000 01112111110 0127999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeC
Q 001109 671 GARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTK 746 (1155)
Q Consensus 671 g~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~ 746 (1155)
.+.||||+.||.|.+||+...+.+.+++ .....|.+|+|+ -||..||+|+.
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~~---~~~~SI~slsfs----------------------~dG~~LAia~s 294 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFNRKRLKQLA---KYETSISSLSFS----------------------MDGSLLAIASS 294 (323)
T ss_pred cceEEecCCCceEEEccCcchhhhhhcc---CCCCceEEEEec----------------------cCCCeEEEEec
Confidence 9999999999999999999988887653 356789999999 78999998875
No 124
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2e-15 Score=152.56 Aligned_cols=274 Identities=15% Similarity=0.146 Sum_probs=189.5
Q ss_pred cCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCce
Q 001109 302 EKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQ 381 (1155)
Q Consensus 302 ~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~ 381 (1155)
...|.+++|+ |.|...|+|+...+.|+-..+.....+.-.... ..|..-+--+.+.|+..|+..+|++ .|.
T Consensus 32 sqairav~fh-p~g~lyavgsnskt~ric~yp~l~~~r~~hea~-~~pp~v~~kr~khhkgsiyc~~ws~-------~ge 102 (350)
T KOG0641|consen 32 SQAIRAVAFH-PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAA-KQPPSVLCKRNKHHKGSIYCTAWSP-------CGE 102 (350)
T ss_pred hhheeeEEec-CCCceEEeccCCceEEEEccccccCcccccccc-cCCCeEEeeeccccCccEEEEEecC-------ccC
Confidence 5679999999 999999999999999998665543222111111 1122223344567889999999985 678
Q ss_pred EEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCC
Q 001109 382 LFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSP 461 (1155)
Q Consensus 382 llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~ 461 (1155)
|++.|+.| +.+.++.++... | ++.-
T Consensus 103 liatgsnd----k~ik~l~fn~dt------~-------------------------------------~~~g-------- 127 (350)
T KOG0641|consen 103 LIATGSND----KTIKVLPFNADT------C-------------------------------------NATG-------- 127 (350)
T ss_pred eEEecCCC----ceEEEEeccccc------c-------------------------------------cccC--------
Confidence 88888876 566665443211 0 0000
Q ss_pred cccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCc
Q 001109 462 KKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQ 541 (1155)
Q Consensus 462 ~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~ 541 (1155)
..+.+..|+..|..++|.-++.
T Consensus 128 ---------------~dle~nmhdgtirdl~fld~~~------------------------------------------- 149 (350)
T KOG0641|consen 128 ---------------HDLEFNMHDGTIRDLAFLDDPE------------------------------------------- 149 (350)
T ss_pred ---------------cceeeeecCCceeeeEEecCCC-------------------------------------------
Confidence 0112334777777777631110
Q ss_pred ccccccCCcCcEEEEEE-CCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEE
Q 001109 542 LHDAEDYLVERLYIAGY-RDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYN 620 (1155)
Q Consensus 542 ~~l~~~s~~~~lLaTgs-~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd 620 (1155)
..+.+|++|+ .|..|.+=|...++ .+.. +.||++-|.++ ++-+|-++|+|++|.+||+||
T Consensus 150 -------s~~~il~s~gagdc~iy~tdc~~g~--~~~a---------~sghtghilal-yswn~~m~~sgsqdktirfwd 210 (350)
T KOG0641|consen 150 -------SGGAILASAGAGDCKIYITDCGRGQ--GFHA---------LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWD 210 (350)
T ss_pred -------cCceEEEecCCCcceEEEeecCCCC--ccee---------ecCCcccEEEE-EEecCcEEEccCCCceEEEEe
Confidence 1233677665 46666666666665 2222 34888889887 567899999999999999999
Q ss_pred eccCccccceeeeccCCceEEEecCCCCCceeEEeec---CCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEe
Q 001109 621 LIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSV---LNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFIT 697 (1155)
Q Consensus 621 ~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~---h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~ 697 (1155)
+..+... .++.. .+.+ ..+.|++|+..|.|++||+|-.|....++|++.++.+...
T Consensus 211 lrv~~~v-------------~~l~~--------~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f 269 (350)
T KOG0641|consen 211 LRVNSCV-------------NTLDN--------DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF 269 (350)
T ss_pred eecccee-------------eeccC--------cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee
Confidence 9876432 11110 1111 2468999999999999999999999999999999887654
Q ss_pred ccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeee
Q 001109 698 DSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFS 763 (1155)
Q Consensus 698 ~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~ 763 (1155)
..|+..|.++.|| |.-.+|++++.|..|++-|++ |.+-..
T Consensus 270 ---~phsadir~vrfs----------------------p~a~yllt~syd~~ikltdlq-gdla~e 309 (350)
T KOG0641|consen 270 ---HPHSADIRCVRFS----------------------PGAHYLLTCSYDMKIKLTDLQ-GDLAHE 309 (350)
T ss_pred ---CCCccceeEEEeC----------------------CCceEEEEecccceEEEeecc-cchhhc
Confidence 4599999999999 777889999999999999987 554433
No 125
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.5e-15 Score=160.38 Aligned_cols=252 Identities=15% Similarity=0.133 Sum_probs=182.4
Q ss_pred CCcceeeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcC-CCCCEEEEEEEcCCcEEEEEec--CCeE
Q 001109 31 FDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSP-KQLAFKHLEFLQNQGFLVSISS--GNEI 107 (1155)
Q Consensus 31 ~~~~~~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~-~~~~V~~l~Fs~dg~~LvS~s~--Dg~I 107 (1155)
|.+.+.++. ..+.|++|.|+++|.+|++++.|-+++||+..++..+.+.. .+-.|..+.|......++.++. |.+|
T Consensus 4 ~~~ak~f~~-~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 4 FRPAKVFRE-TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccc-CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 455666654 45789999999999999999999999999988776665543 3457888999888888888886 8999
Q ss_pred EEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccc
Q 001109 108 QLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNH 186 (1155)
Q Consensus 108 ~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~ 186 (1155)
|.-++.+.+.++.+.+| ..|++++++|-++.+++++.|.+|++|++-....+-. +.. .+.-..+|.|.+
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-----l~~-----~~~pi~AfDp~G 152 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-----LNL-----SGRPIAAFDPEG 152 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-----Eec-----CCCcceeECCCC
Confidence 99999999999999998 7899999999999999999999999998775443211 000 011244677766
Q ss_pred cccccccccccc-ceeeecCCCCCCCc--cc----ccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEc
Q 001109 187 IQREKGKAAFNA-SLLFYCMPPDESGF--ID----FIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDV 259 (1155)
Q Consensus 187 ~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~----~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~ 259 (1155)
.-.. ++... .+.+|.+.....|. .. ....... .+.|+|+ | +.|+.+...+.+.+.|.
T Consensus 153 LifA---~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~-----~l~FS~d--G------K~iLlsT~~s~~~~lDA 216 (311)
T KOG1446|consen 153 LIFA---LANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWT-----DLEFSPD--G------KSILLSTNASFIYLLDA 216 (311)
T ss_pred cEEE---EecCCCeEEEEEecccCCCCceeEccCCCCcccee-----eeEEcCC--C------CEEEEEeCCCcEEEEEc
Confidence 3110 01111 34555554332221 00 1123333 4999998 4 67999999999999999
Q ss_pred cCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCC
Q 001109 260 SEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAAS 337 (1155)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~ 337 (1155)
-+|.++..... +. + ...---+++|+ |||++|++|+.||+|.+|++.++..
T Consensus 217 f~G~~~~tfs~-----~~--------~--------------~~~~~~~a~ft-Pds~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 217 FDGTVKSTFSG-----YP--------N--------------AGNLPLSATFT-PDSKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred cCCcEeeeEee-----cc--------C--------------CCCcceeEEEC-CCCcEEEEecCCCcEEEEEcCCCcE
Confidence 99997765322 00 0 01112478998 9999999999999999999988753
No 126
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=5e-16 Score=164.76 Aligned_cols=150 Identities=15% Similarity=0.143 Sum_probs=115.9
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
+.+|.+++.++-+.|+++|+||+-.++....+.|+ + .-+.|.|+|.|.+++++..++ |-+|.++...
T Consensus 134 siHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~----------~--~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~ 200 (362)
T KOG0294|consen 134 SIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK----------N--KATLVSWSPQGDHFVVSGRNK-IDIYQLDNAS 200 (362)
T ss_pred EecCCCceEEEEcCCceeeeehhhcCccceeeccC----------C--cceeeEEcCCCCEEEEEeccE-EEEEecccHh
Confidence 67899999999999999999999888744334343 1 234599999999999998874 8899987643
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNS 705 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~ 705 (1155)
.... ...+..+.|+-|-. +..|++|.+|+.|++||-++..+++.+ .+|..
T Consensus 201 v~~~--------------------------i~~~~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~~~~~---~AH~~ 250 (362)
T KOG0294|consen 201 VFRE--------------------------IENPKRILCATFLD-GSELLVGGDNEWISLKDTDSDTPLTEF---LAHEN 250 (362)
T ss_pred Hhhh--------------------------hhccccceeeeecC-CceEEEecCCceEEEeccCCCccceee---ecchh
Confidence 2110 11124466777754 458999999999999999987776643 46999
Q ss_pred CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCC
Q 001109 706 PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTG 758 (1155)
Q Consensus 706 ~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG 758 (1155)
+|.++.+.. +|++.+|+++|.||.|+|||.+.-
T Consensus 251 RVK~i~~~~--------------------~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 251 RVKDIASYT--------------------NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred heeeeEEEe--------------------cCCceEEEEeccCceEEEEEcccc
Confidence 999999753 378999999999999999998754
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=8.3e-17 Score=187.42 Aligned_cols=233 Identities=18% Similarity=0.221 Sum_probs=163.8
Q ss_pred cEEEEEEcCCeEEEEEccC---CeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEE
Q 001109 243 SQLLLVYANGLIILWDVSE---DKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLA 319 (1155)
Q Consensus 243 ~~llsg~~dG~I~lWd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~la 319 (1155)
++|++++.+|.|.+||+.. .+++.. +..|+..|.+++|++....+|+
T Consensus 101 NlIAT~s~nG~i~vWdlnk~~rnk~l~~------------------------------f~EH~Rs~~~ldfh~tep~ili 150 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKSIRNKLLTV------------------------------FNEHERSANKLDFHSTEPNILI 150 (839)
T ss_pred hhheeecCCCcEEEEecCccccchhhhH------------------------------hhhhccceeeeeeccCCccEEE
Confidence 7899999999999999976 222221 1237899999999966788999
Q ss_pred EEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEE
Q 001109 320 VGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTML 399 (1155)
Q Consensus 320 sg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl 399 (1155)
+|+.||+|++||++....... ..+..+.|+.++|++
T Consensus 151 SGSQDg~vK~~DlR~~~S~~t----------------~~~nSESiRDV~fsp---------------------------- 186 (839)
T KOG0269|consen 151 SGSQDGTVKCWDLRSKKSKST----------------FRSNSESIRDVKFSP---------------------------- 186 (839)
T ss_pred ecCCCceEEEEeeeccccccc----------------ccccchhhhceeecc----------------------------
Confidence 999999999999987644221 011223344444443
Q ss_pred EccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCc
Q 001109 400 YLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPM 479 (1155)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~ 479 (1155)
. .+..+++...+|.|.+||++.. .+...
T Consensus 187 --------------------------------~-----~~~~F~s~~dsG~lqlWDlRqp---------------~r~~~ 214 (839)
T KOG0269|consen 187 --------------------------------G-----YGNKFASIHDSGYLQLWDLRQP---------------DRCEK 214 (839)
T ss_pred --------------------------------C-----CCceEEEecCCceEEEeeccCc---------------hhHHH
Confidence 1 1235556667789999998621 11122
Q ss_pred ccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEEC
Q 001109 480 LIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYR 559 (1155)
Q Consensus 480 ~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~ 559 (1155)
.+..|.++|.| + .++|++.+||||+.
T Consensus 215 k~~AH~GpV~c-----------------------------------------------------~-nwhPnr~~lATGGR 240 (839)
T KOG0269|consen 215 KLTAHNGPVLC-----------------------------------------------------L-NWHPNREWLATGGR 240 (839)
T ss_pred HhhcccCceEE-----------------------------------------------------E-eecCCCceeeecCC
Confidence 23334444333 3 56788889999999
Q ss_pred CCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCe-EEEEe--CCCeEEEEEeccCccccceeeeccC
Q 001109 560 DGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLN-LAIGS--SSGLVWLYNLIKSSNEETLNLVTET 636 (1155)
Q Consensus 560 DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~-Lasgs--~dG~V~lwd~~~~~~~~~~~~v~~~ 636 (1155)
|++|||||.+++...++.++++ ..+|..|.|.|+.++ ||+++ .|-.|+|||+...
T Consensus 241 DK~vkiWd~t~~~~~~~~tInT----------iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP------------ 298 (839)
T KOG0269|consen 241 DKMVKIWDMTDSRAKPKHTINT----------IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP------------ 298 (839)
T ss_pred CccEEEEeccCCCccceeEEee----------cceeeeeeeccCccchhhhhhccccceEEEEeeccc------------
Confidence 9999999999887655555542 249999999998764 56655 3678999999873
Q ss_pred CceEEEecCCCCCceeEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEecC
Q 001109 637 GKEVHILPGGDGPQCKALFSVLNSPICNLKFSN-FGARLAVGFECSQVAMLDIS 689 (1155)
Q Consensus 637 ~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSp-dg~~LAsGs~Dg~V~lWDi~ 689 (1155)
|.+.++|..|+..|+.++|-. |-..|-+++.||+|..-.++
T Consensus 299 ------------YIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 299 ------------YIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred ------------cccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 345678899999999999965 44467788888877544333
No 128
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.9e-16 Score=162.54 Aligned_cols=265 Identities=20% Similarity=0.232 Sum_probs=177.7
Q ss_pred eeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCc---eEEEE-cCCCCCEEEEEEEc--CCcEEEEEecCCeEEE
Q 001109 36 TLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNI---EGLLV-SPKQLAFKHLEFLQ--NQGFLVSISSGNEIQL 109 (1155)
Q Consensus 36 ~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~---~~~~~-~~~~~~V~~l~Fs~--dg~~LvS~s~Dg~I~v 109 (1155)
..-.+|...|..+..+--|++||+++.|++||||...+. ..+.. ..|++||..++|.. -|.+|+|++.||.|.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 344678888888888888999999999999999986542 23333 36799999999987 6889999999999999
Q ss_pred EECCCCcee--eeecCC-CceeEEEEecC--CCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEec
Q 001109 110 WDLEARRIT--STLPWE-SNITAFSVIFG--TSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCP 184 (1155)
Q Consensus 110 WDl~t~~~~--~~l~~~-~~Vtsva~spd--~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p 184 (1155)
|.-+.|+-. +....| +.|+++++.|. |-.|++|+.||.|+|+.++.+.+-.. -+|.. ..-.++.+++|.|
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t---~ki~~--aH~~GvnsVswap 159 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT---SKIVF--AHEIGVNSVSWAP 159 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc---hhhhh--ccccccceeeecC
Confidence 998888533 333334 78999999886 66899999999999999998732111 01110 0001122445544
Q ss_pred ccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeE
Q 001109 185 NHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKV 264 (1155)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~ 264 (1155)
... .++++. -.|. .+..+|++|+-|+.|+||+...+.-
T Consensus 160 a~~-----------------------------~g~~~~-------~~~~------~~~krlvSgGcDn~VkiW~~~~~~w 197 (299)
T KOG1332|consen 160 ASA-----------------------------PGSLVD-------QGPA------AKVKRLVSGGCDNLVKIWKFDSDSW 197 (299)
T ss_pred cCC-----------------------------Cccccc-------cCcc------cccceeeccCCccceeeeecCCcch
Confidence 321 011110 0111 1126899999999999999887642
Q ss_pred EEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCC----CeEEEEEcCCcEEEEEcCCCCCccc
Q 001109 265 VLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDG----SVLAVGYVDGDILLWNLRAAASTKD 340 (1155)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG----~~lasg~~DG~I~lWd~~s~~~~~~ 340 (1155)
...+. + +.|...|+.++|. |.- .+||+++.||++.||-.......
T Consensus 198 ~~e~~-----l-----------------------~~H~dwVRDVAwa-P~~gl~~s~iAS~SqDg~viIwt~~~e~e~-- 246 (299)
T KOG1332|consen 198 KLERT-----L-----------------------EGHKDWVRDVAWA-PSVGLPKSTIASCSQDGTVIIWTKDEEYEP-- 246 (299)
T ss_pred hhhhh-----h-----------------------hhcchhhhhhhhc-cccCCCceeeEEecCCCcEEEEEecCccCc--
Confidence 21110 1 1368899999998 643 68999999999999987632111
Q ss_pred cccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEE
Q 001109 341 WKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLY 400 (1155)
Q Consensus 341 ~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~ 400 (1155)
++. ++ | .....++..+.|+. .+.-|.+++|+ +.+++|.
T Consensus 247 wk~--------tl-l--~~f~~~~w~vSWS~------sGn~LaVs~Gd-----Nkvtlwk 284 (299)
T KOG1332|consen 247 WKK--------TL-L--EEFPDVVWRVSWSL------SGNILAVSGGD-----NKVTLWK 284 (299)
T ss_pred ccc--------cc-c--ccCCcceEEEEEec------cccEEEEecCC-----cEEEEEE
Confidence 110 00 1 12346789999986 44555566665 5677763
No 129
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.72 E-value=3.6e-16 Score=180.29 Aligned_cols=270 Identities=19% Similarity=0.191 Sum_probs=198.9
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc---CCCCCEEE-EEEEc-CCcEEEEEecCCeEEEEECC
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS---PKQLAFKH-LEFLQ-NQGFLVSISSGNEIQLWDLE 113 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~---~~~~~V~~-l~Fs~-dg~~LvS~s~Dg~I~vWDl~ 113 (1155)
.||...|..+++-+.. .+++|+.||+++||...+.+.+-.+ .+.+.|.. ++|.+ ++++|++++.|.+|.+|.+.
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~ 89 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS 89 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC
Confidence 6999999999987755 8889999999999998776655422 24455544 66654 56779999999999999999
Q ss_pred CCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccc
Q 001109 114 ARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKG 192 (1155)
Q Consensus 114 t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~ 192 (1155)
+..++++|++| +.|+|++...++. |++|+-|.+++||....-. |..+ +
T Consensus 90 ~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~-------~~l~-----------------------g 138 (745)
T KOG0301|consen 90 QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV-------YSLQ-----------------------G 138 (745)
T ss_pred CCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhh-------cccC-----------------------C
Confidence 99999999988 8899999888887 9999999999999544311 1111 1
Q ss_pred ccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccc
Q 001109 193 KAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKD 272 (1155)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~ 272 (1155)
|..+|+. +..-|+ +.+++|+.|.+|++|.. ++++++.
T Consensus 139 -----------------------H~asVWA-----v~~l~e---------~~~vTgsaDKtIklWk~--~~~l~tf---- 175 (745)
T KOG0301|consen 139 -----------------------HTASVWA-----VASLPE---------NTYVTGSADKTIKLWKG--GTLLKTF---- 175 (745)
T ss_pred -----------------------cchheee-----eeecCC---------CcEEeccCcceeeeccC--Cchhhhh----
Confidence 2444555 888886 35999999999999986 5565542
Q ss_pred cccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCccc
Q 001109 273 LQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGK 352 (1155)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~k 352 (1155)
. +|...|+.+++- ++..|++++.||.|++|++... ..
T Consensus 176 ---~-----------------------gHtD~VRgL~vl--~~~~flScsNDg~Ir~w~~~ge-~l-------------- 212 (745)
T KOG0301|consen 176 ---S-----------------------GHTDCVRGLAVL--DDSHFLSCSNDGSIRLWDLDGE-VL-------------- 212 (745)
T ss_pred ---c-----------------------cchhheeeeEEe--cCCCeEeecCCceEEEEeccCc-ee--------------
Confidence 1 268899999998 5556889999999999999543 21
Q ss_pred ccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecC-CCceeEEEEec
Q 001109 353 LQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLER-KGSFVDMVLLP 431 (1155)
Q Consensus 353 l~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~-~~~v~d~~~~~ 431 (1155)
+...+|..-|+++... .++.++++.|.| +.+++|.-+ .|.. .+.+ ...+++...++
T Consensus 213 --~~~~ghtn~vYsis~~-------~~~~~Ivs~gED----rtlriW~~~--------e~~q--~I~lPttsiWsa~~L~ 269 (745)
T KOG0301|consen 213 --LEMHGHTNFVYSISMA-------LSDGLIVSTGED----RTLRIWKKD--------ECVQ--VITLPTTSIWSAKVLL 269 (745)
T ss_pred --eeeeccceEEEEEEec-------CCCCeEEEecCC----ceEEEeecC--------ceEE--EEecCccceEEEEEee
Confidence 1233566667777522 345667777765 678887554 2222 2233 33788888887
Q ss_pred CCCCCCCceeEEEEcCCCeeEEecC
Q 001109 432 NGMNESHGTLPCVLTNPGKLQVYDR 456 (1155)
Q Consensus 432 ~~~~~~~~~~l~v~~~~G~l~~~d~ 456 (1155)
.+ .++++++||.+++|-.
T Consensus 270 Ng-------DIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 270 NG-------DIVVGGSDGRVRVFTV 287 (745)
T ss_pred CC-------CEEEeccCceEEEEEe
Confidence 66 5889999999999864
No 130
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=6.7e-16 Score=163.42 Aligned_cols=165 Identities=15% Similarity=0.094 Sum_probs=115.9
Q ss_pred cCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcc
Q 001109 547 DYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSN 626 (1155)
Q Consensus 547 ~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~ 626 (1155)
....+.+|+|++.|.+|-+|+..+.. |..+.++. ..-+..+.||+|+++|+++..-.|++|.+--.+.
T Consensus 195 iA~~~k~imsas~dt~i~lw~lkGq~---L~~idtnq---------~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kd 262 (420)
T KOG2096|consen 195 IAGNAKYIMSASLDTKICLWDLKGQL---LQSIDTNQ---------SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD 262 (420)
T ss_pred ecCCceEEEEecCCCcEEEEecCCce---eeeecccc---------ccccceeeCCCCcEEEEecCCCCceEEEEEeccC
Confidence 34556799999999999999998433 33343321 1345678999999999999999999999754321
Q ss_pred ccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCC-------ccEEEEecc
Q 001109 627 EETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDIST-------FSVLFITDS 699 (1155)
Q Consensus 627 ~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~-------~~~l~~~~~ 699 (1155)
++++-+ .....|.||++.|+++||||+++++++.|.||+++|||++- +..|.....
T Consensus 263 -G~fqev----------------~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~ 325 (420)
T KOG2096|consen 263 -GTFQEV----------------KRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSA 325 (420)
T ss_pred -cchhhh----------------hhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCc
Confidence 111100 01235789999999999999999999999999999999852 333333211
Q ss_pred -CC-CCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeee
Q 001109 700 -LS-NSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 700 -~~-~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
+. .-..|+ .|+.+ |.|+.|+. +.-.++.++..++|+.....
T Consensus 326 pl~aag~~p~-RL~ls----------------------P~g~~lA~-s~gs~l~~~~se~g~~~~~~ 368 (420)
T KOG2096|consen 326 PLHAAGSEPV-RLELS----------------------PSGDSLAV-SFGSDLKVFASEDGKDYPEL 368 (420)
T ss_pred chhhcCCCce-EEEeC----------------------CCCcEEEe-ecCCceEEEEcccCccchhH
Confidence 11 122344 56666 77887775 45578999999988865544
No 131
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.70 E-value=5.6e-16 Score=172.03 Aligned_cols=281 Identities=15% Similarity=0.170 Sum_probs=180.0
Q ss_pred cccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccc
Q 001109 216 IIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETV 295 (1155)
Q Consensus 216 ~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1155)
+.+.|.. +.+-|..+ +.+++.+..|.|.|||..+..-..... |. +...
T Consensus 123 h~gEVnR-----aRymPQnp-------~iVAt~t~~~dv~Vfd~tk~~s~~~~~------------------~~--~~Pd 170 (422)
T KOG0264|consen 123 HDGEVNR-----ARYMPQNP-------NIVATKTSSGDVYVFDYTKHPSKPKAS------------------GE--CRPD 170 (422)
T ss_pred CCccchh-----hhhCCCCC-------cEEEecCCCCCEEEEEeccCCCccccc------------------cc--CCCc
Confidence 4566777 88889876 588888999999999976533221100 00 0000
Q ss_pred cccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCC
Q 001109 296 SDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSR 375 (1155)
Q Consensus 296 ~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~ 375 (1155)
+.=.+|.++-++++|+...--.|++|+.|++|++||+........ ...+.. .+.+|...|-.++|.+
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~-----~~~p~~----~~~~h~~~VeDV~~h~---- 237 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDK-----VVDPKT----IFSGHEDVVEDVAWHP---- 237 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCc-----cccceE----EeecCCcceehhhccc----
Confidence 001124566778999854566899999999999999986532100 000000 0112222222222221
Q ss_pred CCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEec
Q 001109 376 NDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYD 455 (1155)
Q Consensus 376 ~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d 455 (1155)
.+...+..++.++.|.+||
T Consensus 238 -------------------------------------------------------------~h~~lF~sv~dd~~L~iwD 256 (422)
T KOG0264|consen 238 -------------------------------------------------------------LHEDLFGSVGDDGKLMIWD 256 (422)
T ss_pred -------------------------------------------------------------cchhhheeecCCCeEEEEE
Confidence 1122455667788999999
Q ss_pred CCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCccc
Q 001109 456 RPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLT 535 (1155)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~ 535 (1155)
.+. + ..+.......|...|.|++|.+ +
T Consensus 257 ~R~-------------~-~~~~~~~~~ah~~~vn~~~fnp-----------------------------~---------- 283 (422)
T KOG0264|consen 257 TRS-------------N-TSKPSHSVKAHSAEVNCVAFNP-----------------------------F---------- 283 (422)
T ss_pred cCC-------------C-CCCCcccccccCCceeEEEeCC-----------------------------C----------
Confidence 862 1 2223345567888888888742 0
Q ss_pred CCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCC-eEEEEeCCC
Q 001109 536 GGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTL-NLAIGSSSG 614 (1155)
Q Consensus 536 gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~-~Lasgs~dG 614 (1155)
++.+|||||.|++|++||++.... ++++++ +|...|..|.|||... .||+++.|+
T Consensus 284 --------------~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e---------~H~dev~~V~WSPh~etvLASSg~D~ 339 (422)
T KOG0264|consen 284 --------------NEFILATGSADKTVALWDLRNLNK-PLHTFE---------GHEDEVFQVEWSPHNETVLASSGTDR 339 (422)
T ss_pred --------------CCceEEeccCCCcEEEeechhccc-Cceecc---------CCCcceEEEEeCCCCCceeEecccCC
Confidence 123899999999999999987653 344444 8999999999999764 689999999
Q ss_pred eEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEecCC
Q 001109 615 LVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGAR-LAVGFECSQVAMLDIST 690 (1155)
Q Consensus 615 ~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~-LAsGs~Dg~V~lWDi~~ 690 (1155)
.+.|||+..-.....-..-..++.+ .+..=.||++.|..+.|+|...+ +++.++|+.+.||....
T Consensus 340 rl~vWDls~ig~eq~~eda~dgppE-----------llF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPEDAEDGPPE-----------LLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cEEEEeccccccccChhhhccCCcc-----------eeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9999999763211000000011111 11222589999999999999875 88999999999999874
No 132
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.6e-15 Score=171.94 Aligned_cols=150 Identities=17% Similarity=0.158 Sum_probs=113.4
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
.|+|....|+.++ -..||+||+....+ +..+.+ -...|..++.+|.|..|+.|+.|+.+..||+.-..
T Consensus 573 ~FHPs~p~lfVaT-q~~vRiYdL~kqel--vKkL~t---------g~kwiS~msihp~GDnli~gs~d~k~~WfDldlss 640 (733)
T KOG0650|consen 573 KFHPSKPYLFVAT-QRSVRIYDLSKQEL--VKKLLT---------GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS 640 (733)
T ss_pred EecCCCceEEEEe-ccceEEEehhHHHH--HHHHhc---------CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc
Confidence 3444444455554 46799999977542 122221 12389999999999999999999999999998653
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe------cCCccEEEEecc
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLD------ISTFSVLFITDS 699 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWD------i~~~~~l~~~~~ 699 (1155)
. +..++.-|...|++|+|++.-.++|+|+.||+|.|+- +-..-.+.....
T Consensus 641 k------------------------Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 641 K------------------------PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred c------------------------hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 2 2345678999999999999999999999999999984 322233444444
Q ss_pred CCCCCCC----eeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEE
Q 001109 700 LSNSNSP----VLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVC 753 (1155)
Q Consensus 700 ~~~h~~~----V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vw 753 (1155)
+.||... |....|. |...+|++++.||+|++|
T Consensus 697 L~gH~~~~~~gVLd~~wH----------------------P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWH----------------------PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccCceeecccceEeeccc----------------------CCCceEEecCCCceEEee
Confidence 5677754 9999998 778899999999999998
No 133
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.70 E-value=7e-15 Score=166.76 Aligned_cols=118 Identities=11% Similarity=0.099 Sum_probs=95.7
Q ss_pred eccCCCCCceEEEEcCC-CCEEEEEEcCCeEEEEccCCc-eEE------EEcCCCCCEEEEEEEcCCcEEEEEecCCeEE
Q 001109 37 LHYGIPSTASILAFDHV-QSLLAIGTQDGRIKVIGGDNI-EGL------LVSPKQLAFKHLEFLQNQGFLVSISSGNEIQ 108 (1155)
Q Consensus 37 ~~~G~~~~vs~lafsp~-g~lLAsgs~DG~I~vw~~~~~-~~~------~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~ 108 (1155)
...+|...|+.+.|+|- ..+||+|+.|..||||....+ ..- ...+....|.+|.|.|...-|+..+..|++.
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~ 153 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVY 153 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEE
Confidence 34689999999999994 469999999999999987632 111 1123356889999999655466666789999
Q ss_pred EEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCC
Q 001109 109 LWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTE 156 (1155)
Q Consensus 109 vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~ 156 (1155)
|||+.+++.+..+..| ..|.+..|+.||.+|++.+.|..|+|+ |.+
T Consensus 154 i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirif--DPR 200 (1012)
T KOG1445|consen 154 ITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIF--DPR 200 (1012)
T ss_pred EEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEe--CCc
Confidence 9999999999888877 778999999999999999999999876 553
No 134
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.69 E-value=1.4e-15 Score=169.01 Aligned_cols=149 Identities=21% Similarity=0.243 Sum_probs=117.8
Q ss_pred CcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCC-CeEEEEeCCCeEEEEEeccCccccc
Q 001109 551 ERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVT-LNLAIGSSSGLVWLYNLIKSSNEET 629 (1155)
Q Consensus 551 ~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg-~~Lasgs~dG~V~lwd~~~~~~~~~ 629 (1155)
..++++.+.|+.+.|||++.+...+.. ...+|+++|+|++|.|-+ -.||+|+.|++|.|||++.-.
T Consensus 240 ~~lF~sv~dd~~L~iwD~R~~~~~~~~---------~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~---- 306 (422)
T KOG0264|consen 240 EDLFGSVGDDGKLMIWDTRSNTSKPSH---------SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN---- 306 (422)
T ss_pred hhhheeecCCCeEEEEEcCCCCCCCcc---------cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc----
Confidence 457899999999999999864211111 123789999999999965 568999999999999998732
Q ss_pred eeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEecCC--------------ccEE
Q 001109 630 LNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFG-ARLAVGFECSQVAMLDIST--------------FSVL 694 (1155)
Q Consensus 630 ~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg-~~LAsGs~Dg~V~lWDi~~--------------~~~l 694 (1155)
++..+|.+|...|.+|.|||.- ..||+++.|+.+.|||+.. +.++
T Consensus 307 --------------------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEll 366 (422)
T KOG0264|consen 307 --------------------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELL 366 (422)
T ss_pred --------------------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCccee
Confidence 2346789999999999999976 4799999999999999964 1223
Q ss_pred EEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECC
Q 001109 695 FITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDST 756 (1155)
Q Consensus 695 ~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~ 756 (1155)
+. + .||.+.|....|.++ +-..|+|++.|+.+.||...
T Consensus 367 F~-H--gGH~~kV~DfsWnp~---------------------ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 367 FI-H--GGHTAKVSDFSWNPN---------------------EPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EE-e--cCcccccccccCCCC---------------------CCeEEEEecCCceEEEeecc
Confidence 32 2 379999999999843 34578899999999999865
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.7e-14 Score=171.41 Aligned_cols=173 Identities=18% Similarity=0.153 Sum_probs=133.6
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
+|+.+|.++|.||.|-.|++-+..+..- ..++ .+|.++|.+|.|+|.+.+||+.+.||.|++|++..+.
T Consensus 103 ~v~g~g~~iaagsdD~~vK~~~~~D~s~--~~~l---------rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~ 171 (933)
T KOG1274|consen 103 AVSGSGKMIAAGSDDTAVKLLNLDDSSQ--EKVL---------RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI 171 (933)
T ss_pred EEecCCcEEEeecCceeEEEEeccccch--heee---------cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccch
Confidence 6778888999999999999999877651 1222 3899999999999999999999999999999999764
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNS 705 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~ 705 (1155)
....+ . +......+. ....++.++|+|+|..||+-..|+.|++++..+....+..+. ..+++
T Consensus 172 ~~~tl---~-------------~v~k~n~~~-~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~-~~~ss 233 (933)
T KOG1274|consen 172 LSKTL---T-------------GVDKDNEFI-LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD-KLSSS 233 (933)
T ss_pred hhhhc---c-------------cCCcccccc-ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc-ccccc
Confidence 32110 0 000000001 145678899999999999999999999999999988876643 33555
Q ss_pred CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECC------CCceeeeeecccC
Q 001109 706 PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDST------TGHILFSRSIHHQ 769 (1155)
Q Consensus 706 ~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~------tG~~l~~~~~~~~ 769 (1155)
.+..++|+ |.|.+|++++.||.|.|||.+ -++.|.-..++|.
T Consensus 234 ~~~~~~ws----------------------PnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 234 KFSDLQWS----------------------PNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPN 281 (933)
T ss_pred ceEEEEEc----------------------CCCcEEeeeccCCcEEEEecccchhccccceeEEEecCCC
Confidence 59999999 778999999999999999999 4555555555554
No 136
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.67 E-value=1.6e-15 Score=168.44 Aligned_cols=146 Identities=16% Similarity=0.139 Sum_probs=118.7
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
.++++|..|-||+-|.+||-||+..+.-. .+. .-...|.+|..||++..||+|-.++.|.|-......
T Consensus 558 dis~dGtklWTGGlDntvRcWDlregrql----qqh--------dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 558 DISKDGTKLWTGGLDNTVRCWDLREGRQL----QQH--------DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred EecCCCceeecCCCccceeehhhhhhhhh----hhh--------hhhhhheecccCCCccceeeecccCcEEEEecCCcc
Confidence 55677778899999999999999877511 111 122478899999999999999999999888776532
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNS 705 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~ 705 (1155)
. ..+..|.+.|.+|.|++-|+++++.+.|..+..|..--|.-+++.. -.+
T Consensus 626 k--------------------------yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk----E~S 675 (705)
T KOG0639|consen 626 K--------------------------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESS 675 (705)
T ss_pred c--------------------------eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc----ccC
Confidence 1 2346789999999999999999999999999999987777777643 467
Q ss_pred CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC
Q 001109 706 PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 706 ~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
+|.++..| .|.+++++||-|....|+.+
T Consensus 676 sVlsCDIS----------------------~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 676 SVLSCDIS----------------------FDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cceeeeec----------------------cCceEEEecCCCcceEEEEE
Confidence 89999998 78999999999988877754
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.66 E-value=2.1e-15 Score=167.39 Aligned_cols=166 Identities=21% Similarity=0.244 Sum_probs=134.5
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
+.+||.++.+++..||.|+|||+....+ +..+ -||+..+.||.+++||..|.+|+-|.+||-||++++.
T Consensus 516 a~spDakvcFsccsdGnI~vwDLhnq~~--Vrqf---------qGhtDGascIdis~dGtklWTGGlDntvRcWDlregr 584 (705)
T KOG0639|consen 516 AISPDAKVCFSCCSDGNIAVWDLHNQTL--VRQF---------QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR 584 (705)
T ss_pred hcCCccceeeeeccCCcEEEEEccccee--eecc---------cCCCCCceeEEecCCCceeecCCCccceeehhhhhhh
Confidence 7889999999999999999999977652 2223 2899999999999999999999999999999998854
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNS 705 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~ 705 (1155)
.. .-....+.|.+|.++|.+.+||+|-+++.|.|.....+. -|+.+. |.+
T Consensus 585 ql--------------------------qqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhl---heS 634 (705)
T KOG0639|consen 585 QL--------------------------QQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHL---HES 634 (705)
T ss_pred hh--------------------------hhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecc---ccc
Confidence 21 002346789999999999999999999999998877653 455554 999
Q ss_pred CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeecccC-CCceEEEEE
Q 001109 706 PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSIHHQ-ESNAIYMCI 778 (1155)
Q Consensus 706 ~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~~~-~~~al~~~~ 778 (1155)
-|.||.|. +-|++.++.++|.-+.+|..--|.-|-. .+ .+.++++.+
T Consensus 635 cVLSlKFa----------------------~cGkwfvStGkDnlLnawrtPyGasiFq----skE~SsVlsCDI 682 (705)
T KOG0639|consen 635 CVLSLKFA----------------------YCGKWFVSTGKDNLLNAWRTPYGASIFQ----SKESSSVLSCDI 682 (705)
T ss_pred EEEEEEec----------------------ccCceeeecCchhhhhhccCccccceee----ccccCcceeeee
Confidence 99999999 6689999999999999998776665433 24 445555544
No 138
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.66 E-value=2.3e-12 Score=149.96 Aligned_cols=373 Identities=24% Similarity=0.302 Sum_probs=250.8
Q ss_pred eccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCce-EEEEcCC-C-CCEEEEEE-EcCCc-EEEEEec-CCeEEEE
Q 001109 37 LHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIE-GLLVSPK-Q-LAFKHLEF-LQNQG-FLVSISS-GNEIQLW 110 (1155)
Q Consensus 37 ~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~-~~~~~~~-~-~~V~~l~F-s~dg~-~LvS~s~-Dg~I~vW 110 (1155)
...+|...+.++.|++.+..++.++.|+.+.+|+..... .+..... . ..+..+.+ .+++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 346888999999999999999999999999999987664 3333222 2 36777777 77776 4555454 8999999
Q ss_pred ECCC-CceeeeecCC-CceeEEEEecCCCEEEEEeC-CCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccc
Q 001109 111 DLEA-RRITSTLPWE-SNITAFSVIFGTSYMYIGDE-YGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHI 187 (1155)
Q Consensus 111 Dl~t-~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~-dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~ 187 (1155)
|+.. ......+..+ ..|.+++|+|++.++++++. ++.+++|+..... .. ..+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~------------------- 195 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK--PL---STLA------------------- 195 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc--eE---Eeec-------------------
Confidence 9998 6667777666 78999999999999998886 9999999655411 10 0000
Q ss_pred cccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEE
Q 001109 188 QREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLV 267 (1155)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~ 267 (1155)
+ +...+.+ +.++|+.. ..+++++.|+.|++||...+..+..
T Consensus 196 ----~-----------------------~~~~v~~-----~~~~~~~~-------~~~~~~~~d~~i~~wd~~~~~~~~~ 236 (466)
T COG2319 196 ----G-----------------------HTDPVSS-----LAFSPDGG-------LLIASGSSDGTIRLWDLSTGKLLRS 236 (466)
T ss_pred ----c-----------------------CCCceEE-----EEEcCCcc-------eEEEEecCCCcEEEEECCCCcEEee
Confidence 0 1233444 88887632 1455558999999999886666551
Q ss_pred ecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCC
Q 001109 268 RGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSS 347 (1155)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~ 347 (1155)
. +. + |...+ -.+|+ +++..+++++.|+.+++|++.....
T Consensus 237 ~------~~-----------~------------~~~~~-~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~---------- 275 (466)
T COG2319 237 T------LS-----------G------------HSDSV-VSSFS-PDGSLLASGSSDGTIRLWDLRSSSS---------- 275 (466)
T ss_pred e------cC-----------C------------CCcce-eEeEC-CCCCEEEEecCCCcEEEeeecCCCc----------
Confidence 0 01 0 23332 22788 8999999999999999999864310
Q ss_pred CCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEE
Q 001109 348 TDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDM 427 (1155)
Q Consensus 348 ~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~ 427 (1155)
. +.
T Consensus 276 ---------------------------------~--------------~~------------------------------ 278 (466)
T COG2319 276 ---------------------------------L--------------LR------------------------------ 278 (466)
T ss_pred ---------------------------------E--------------EE------------------------------
Confidence 0 00
Q ss_pred EEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHH
Q 001109 428 VLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELS 507 (1155)
Q Consensus 428 ~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~ 507 (1155)
.+. .|...+.++
T Consensus 279 -------------------------~~~---------------------------~~~~~v~~~---------------- 290 (466)
T COG2319 279 -------------------------TLS---------------------------GHSSSVLSV---------------- 290 (466)
T ss_pred -------------------------EEe---------------------------cCCccEEEE----------------
Confidence 000 011111121
Q ss_pred HHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccc
Q 001109 508 KTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIR 587 (1155)
Q Consensus 508 ~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~ 587 (1155)
.+.|++..+++++.|+.+++||...........
T Consensus 291 --------------------------------------~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------- 323 (466)
T COG2319 291 --------------------------------------AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT--------- 323 (466)
T ss_pred --------------------------------------EECCCCCEEEEeeCCCcEEEEEcCCCceEEEee---------
Confidence 122333456668888999999887765321111
Q ss_pred cCCCCCCeEEEEEecCCCeEEEE-eCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEE
Q 001109 588 TATESESVSALEFCSVTLNLAIG-SSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLK 666 (1155)
Q Consensus 588 ~~gh~~~V~~lafspdg~~Lasg-s~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vtsla 666 (1155)
...|...|..+.|.+++..++.+ ..|+.+++|++...... .... ....+..+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-------------------------~~~~-~~~~~~~~~ 377 (466)
T COG2319 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL-------------------------KTLE-GHSNVLSVS 377 (466)
T ss_pred ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCcee-------------------------EEec-CCceEEEEE
Confidence 11455579999994343556665 67899999998774310 1111 112288999
Q ss_pred EcCCCCEEEE-EeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEe
Q 001109 667 FSNFGARLAV-GFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMT 745 (1155)
Q Consensus 667 fSpdg~~LAs-Gs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s 745 (1155)
+++ ...+.. +..++.+.+|+............ +...+..+.++ +++..+++++
T Consensus 378 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----------------------~~~~~~~~~~ 431 (466)
T COG2319 378 FSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG---HTSRVTSLDFS----------------------PDGKSLASGS 431 (466)
T ss_pred ECC-CCCEEEEecCCCceEEEecccCeeeeeccC---CCCcEEEEEEC----------------------CCCcEEEEec
Confidence 999 544444 78999999999998777654322 22678888887 7788899999
Q ss_pred CCceEEEEECCC
Q 001109 746 KDAHIVVCDSTT 757 (1155)
Q Consensus 746 ~Dg~I~vwd~~t 757 (1155)
.+.++++|+..+
T Consensus 432 ~~~~~~~~~~~~ 443 (466)
T COG2319 432 SDNTIRLWDLKT 443 (466)
T ss_pred CCCcEEEEeccC
Confidence 999999999987
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.66 E-value=1.6e-14 Score=151.52 Aligned_cols=317 Identities=16% Similarity=0.167 Sum_probs=189.2
Q ss_pred cccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccc-cccccCCCCCCCCCCccc
Q 001109 216 IIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLK-TEIVDDPSKNAGHNLSET 294 (1155)
Q Consensus 216 ~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 294 (1155)
|.+.|.. +...|.. | +++++|+.||.|.+||++...--...+. -.+ ..+.+-+ |
T Consensus 42 HgGsvNs-----L~id~te-g------rymlSGgadgsi~v~Dl~n~t~~e~s~l---i~k~~c~v~~~-----h----- 96 (397)
T KOG4283|consen 42 HGGSVNS-----LQIDLTE-G------RYMLSGGADGSIAVFDLQNATDYEASGL---IAKHKCIVAKQ-----H----- 96 (397)
T ss_pred CCCccce-----eeecccc-c------eEEeecCCCccEEEEEeccccchhhccc---eeheeeecccc-----C-----
Confidence 3455555 8888864 5 8999999999999999975431110000 000 0010000 1
Q ss_pred ccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCC
Q 001109 295 VSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERS 374 (1155)
Q Consensus 295 ~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~ 374 (1155)
...|.-.|+++.|-+-|...+.+++-|.++++||+.+.+.... + .....|++.+|++
T Consensus 97 ---~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~------------F-----~me~~VYshamSp--- 153 (397)
T KOG4283|consen 97 ---ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVD------------F-----KMEGKVYSHAMSP--- 153 (397)
T ss_pred ---CccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEE------------e-----ecCceeehhhcCh---
Confidence 1135778999999966888999999999999999987643211 0 0112233333332
Q ss_pred CCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEe
Q 001109 375 RNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVY 454 (1155)
Q Consensus 375 ~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~ 454 (1155)
..-... .+++.+.+-++.+.
T Consensus 154 -~a~sHc-----------------------------------------------------------LiA~gtr~~~VrLC 173 (397)
T KOG4283|consen 154 -MAMSHC-----------------------------------------------------------LIAAGTRDVQVRLC 173 (397)
T ss_pred -hhhcce-----------------------------------------------------------EEEEecCCCcEEEE
Confidence 000011 23344455567777
Q ss_pred cCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcc
Q 001109 455 DRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPL 534 (1155)
Q Consensus 455 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l 534 (1155)
|++ ...+...+++|...|.++.+++. .+|
T Consensus 174 Di~----------------SGs~sH~LsGHr~~vlaV~Wsp~---------------------------------~e~-- 202 (397)
T KOG4283|consen 174 DIA----------------SGSFSHTLSGHRDGVLAVEWSPS---------------------------------SEW-- 202 (397)
T ss_pred ecc----------------CCcceeeeccccCceEEEEeccC---------------------------------cee--
Confidence 765 23344567778877766654320 011
Q ss_pred cCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCC--CeeeeeeeCC---CcCccccCCCCCCeEEEEEecCCCeEEE
Q 001109 535 TGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYP--TLSLIHVFGS---ELPGIRTATESESVSALEFCSVTLNLAI 609 (1155)
Q Consensus 535 ~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~--~l~~l~~l~~---~~~~i~~~gh~~~V~~lafspdg~~Las 609 (1155)
+|+||+.||.||+||+... .+..+-.-.+ ++.. ....|.+.|..++|+.|+++|++
T Consensus 203 ------------------vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~-~n~ah~gkvngla~tSd~~~l~~ 263 (397)
T KOG4283|consen 203 ------------------VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK-TNTAHYGKVNGLAWTSDARYLAS 263 (397)
T ss_pred ------------------EEEecCCCceEEEEEeecccceeEEeecccCccCcccc-ccccccceeeeeeecccchhhhh
Confidence 7899999999999999753 3332221111 1111 24478889999999999999999
Q ss_pred EeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 001109 610 GSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDIS 689 (1155)
Q Consensus 610 gs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~ 689 (1155)
.+.|..+++|+...+...... + |..+... ..|. .++ +. +-+...++---.++.+.|+++-
T Consensus 264 ~gtd~r~r~wn~~~G~ntl~~-~---------------g~~~~n~-~~~~-~~~-~~-~~~s~vfv~~p~~~~lall~~~ 323 (397)
T KOG4283|consen 264 CGTDDRIRVWNMESGRNTLRE-F---------------GPIIHNQ-TTSF-AVH-IQ-SMDSDVFVLFPNDGSLALLNLL 323 (397)
T ss_pred ccCccceEEeecccCcccccc-c---------------ccccccc-cccc-eEE-Ee-ecccceEEEEecCCeEEEEEcc
Confidence 999999999999887542100 0 0111000 0000 111 22 2223333333344667777777
Q ss_pred CccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC
Q 001109 690 TFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 690 ~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
.++.+.. ++.|-..|...+|- |+=+.+++|..|+.|..|-+
T Consensus 324 sgs~ir~---l~~h~k~i~c~~~~----------------------~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 324 EGSFVRR---LSTHLKRINCAAYR----------------------PDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CceEEEe---eecccceeeEEeec----------------------CchhhhhccccCCccccccc
Confidence 7776653 34575666666665 67778999999999999975
No 140
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=7.4e-17 Score=186.35 Aligned_cols=168 Identities=18% Similarity=0.183 Sum_probs=143.4
Q ss_pred cCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCC
Q 001109 535 TGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSG 614 (1155)
Q Consensus 535 ~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG 614 (1155)
+|+...+.++ .|++...+|++|+.||+||+||+..... +.+ +.||...+.+|+|+|-+.+.|+|+.|+
T Consensus 67 ~~hespIeSl-~f~~~E~LlaagsasgtiK~wDleeAk~--vrt---------Ltgh~~~~~sv~f~P~~~~~a~gStdt 134 (825)
T KOG0267|consen 67 TGHESPIESL-TFDTSERLLAAGSASGTIKVWDLEEAKI--VRT---------LTGHLLNITSVDFHPYGEFFASGSTDT 134 (825)
T ss_pred eccCCcceee-ecCcchhhhcccccCCceeeeehhhhhh--hhh---------hhccccCcceeeeccceEEeccccccc
Confidence 3444334455 8899999999999999999999986641 112 348889999999999999999999999
Q ss_pred eEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEE
Q 001109 615 LVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVL 694 (1155)
Q Consensus 615 ~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l 694 (1155)
..++||..... |...+.+|...|.+++|+|+|+++|+|++|.+|+|||...++++
T Consensus 135 d~~iwD~Rk~G-------------------------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~ 189 (825)
T KOG0267|consen 135 DLKIWDIRKKG-------------------------CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS 189 (825)
T ss_pred cceehhhhccC-------------------------ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc
Confidence 99999998532 34567889999999999999999999999999999999999988
Q ss_pred EEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeee
Q 001109 695 FITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 695 ~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
..+ .+|...|.+|.|. |-.-+|++|+.|++|++||++|=++|.+.
T Consensus 190 ~ef---~~~e~~v~sle~h----------------------p~e~Lla~Gs~d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 190 KEF---KSHEGKVQSLEFH----------------------PLEVLLAPGSSDRTVRFWDLETFEVISSG 234 (825)
T ss_pred ccc---ccccccccccccC----------------------chhhhhccCCCCceeeeeccceeEEeecc
Confidence 654 5699999999998 66778999999999999999998888776
No 141
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2e-14 Score=152.18 Aligned_cols=161 Identities=16% Similarity=0.144 Sum_probs=114.5
Q ss_pred cEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCc--cccCCCCCCeEEEEEecC---CCeEEEEeCC-----CeEEEEEe
Q 001109 552 RLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPG--IRTATESESVSALEFCSV---TLNLAIGSSS-----GLVWLYNL 621 (1155)
Q Consensus 552 ~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~--i~~~gh~~~V~~lafspd---g~~Lasgs~d-----G~V~lwd~ 621 (1155)
-.||+++.||++|||++-.+.-..-..|..++.. ...+.+..+..||.|+|. ..+||+|+.+ +.++||..
T Consensus 127 LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 127 LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred eEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 3799999999999999866531001112111111 112345568889999974 4478988876 58999988
Q ss_pred ccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEecCCcc-----
Q 001109 622 IKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNF----GARLAVGFECSQVAMLDISTFS----- 692 (1155)
Q Consensus 622 ~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpd----g~~LAsGs~Dg~V~lWDi~~~~----- 692 (1155)
..+... .+-+..+.+|+++|++|+|.|+ ...||+|+.|| |+||.+....
T Consensus 207 ~e~~rK---------------------w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ 264 (361)
T KOG2445|consen 207 NENGRK---------------------WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEE 264 (361)
T ss_pred cCCcce---------------------eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhh
Confidence 764321 1123456799999999999996 34799999999 9999997311
Q ss_pred -------E-----EEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECC
Q 001109 693 -------V-----LFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDST 756 (1155)
Q Consensus 693 -------~-----l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~ 756 (1155)
. +.....+.+|.+.|+.+.|. --|.+|.+.+.||.|++|-..
T Consensus 265 ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN----------------------mtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 265 EEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN----------------------MTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred hcccCCCCccccceEEeeeccCCCCceEEEEEe----------------------eeeeEEeecCCCceeeehhhh
Confidence 1 22223357899999999998 458899999999999999753
No 142
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3e-15 Score=166.31 Aligned_cols=217 Identities=17% Similarity=0.194 Sum_probs=159.1
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEE-cCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCC---
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLV-SPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA--- 114 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~-~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t--- 114 (1155)
.-.|+.|.||+-+|.|.+|+.|+-.|.|++|...++..+.. ..|-..|++|.|+.||.+++|++.||.|.+|++.+
T Consensus 78 ~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 78 IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc
Confidence 35688999999999999999999999999999988876643 34667899999999999999999999999998732
Q ss_pred ------CceeeeecCC-CceeEEEEecCC--CEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecc
Q 001109 115 ------RRITSTLPWE-SNITAFSVIFGT--SYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPN 185 (1155)
Q Consensus 115 ------~~~~~~l~~~-~~Vtsva~spd~--~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~ 185 (1155)
-..++.+..| =.|+++.+.+.| .++++.+.|.++++|++... .+.. .+.
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g--~LLl---ti~----------------- 215 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG--VLLL---TIT----------------- 215 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc--eeeE---EEe-----------------
Confidence 2345555556 479999888764 58999999999999976653 3320 000
Q ss_pred cccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEE
Q 001109 186 HIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVV 265 (1155)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~ 265 (1155)
.+.++ .+++..|.. +++++|+++|.|.+-++..-...
T Consensus 216 ------------------------------fp~si-----~av~lDpae--------~~~yiGt~~G~I~~~~~~~~~~~ 252 (476)
T KOG0646|consen 216 ------------------------------FPSSI-----KAVALDPAE--------RVVYIGTEEGKIFQNLLFKLSGQ 252 (476)
T ss_pred ------------------------------cCCcc-----eeEEEcccc--------cEEEecCCcceEEeeehhcCCcc
Confidence 01222 338899974 57999999999998876543211
Q ss_pred E----EecccccccccccccCCCCCCCCCCccccccccccc--CCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCcc
Q 001109 266 L----VRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVE--KEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTK 339 (1155)
Q Consensus 266 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~ 339 (1155)
. .++.. ... .+....-+|. +.|+|++.+ .||+.|++|+.||.|+|||+.+..+.+
T Consensus 253 ~~~v~~k~~~---~~~---------------t~~~~~~Gh~~~~~ITcLais-~DgtlLlSGd~dg~VcvWdi~S~Q~iR 313 (476)
T KOG0646|consen 253 SAGVNQKGRH---EEN---------------TQINVLVGHENESAITCLAIS-TDGTLLLSGDEDGKVCVWDIYSKQCIR 313 (476)
T ss_pred cccccccccc---ccc---------------ceeeeeccccCCcceeEEEEe-cCccEEEeeCCCCCEEEEecchHHHHH
Confidence 1 11110 000 0000001123 599999999 999999999999999999999876644
No 143
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.6e-14 Score=159.99 Aligned_cols=294 Identities=16% Similarity=0.276 Sum_probs=196.2
Q ss_pred CCC--CCceEEEEcCCCCEEEEEEcCCeEEEEccCCceE--EE-EcCCCCCEEEEEEEcCCc-EEEEEecCCeEEEEECC
Q 001109 40 GIP--STASILAFDHVQSLLAIGTQDGRIKVIGGDNIEG--LL-VSPKQLAFKHLEFLQNQG-FLVSISSGNEIQLWDLE 113 (1155)
Q Consensus 40 G~~--~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~--~~-~~~~~~~V~~l~Fs~dg~-~LvS~s~Dg~I~vWDl~ 113 (1155)
+|| +.|+++.|+|...+|.+|+.||+++||.+++..- +. .+-..-||..+.|.|+|. .+++++....+..||++
T Consensus 209 ~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 209 AHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 444 5799999999999999999999999998765321 11 112366999999999998 88888888999999999
Q ss_pred CCceeeee--cCC--CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccc
Q 001109 114 ARRITSTL--PWE--SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQR 189 (1155)
Q Consensus 114 t~~~~~~l--~~~--~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~ 189 (1155)
+++...-- .+. ..+..+.++|++++|++.+..|.|++...-+ +.++ ..++
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT--~eli-~s~K----------------------- 342 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT--KELI-TSFK----------------------- 342 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh--hhhh-heee-----------------------
Confidence 98764322 222 4688999999999999999999887753222 2221 0011
Q ss_pred cccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEec
Q 001109 190 EKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRG 269 (1155)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~ 269 (1155)
..+.|.. +.|+.+ + +.|++.+.+|.|.+||+....++....
T Consensus 343 --------------------------ieG~v~~-----~~fsSd--s------k~l~~~~~~GeV~v~nl~~~~~~~rf~ 383 (514)
T KOG2055|consen 343 --------------------------IEGVVSD-----FTFSSD--S------KELLASGGTGEVYVWNLRQNSCLHRFV 383 (514)
T ss_pred --------------------------eccEEee-----EEEecC--C------cEEEEEcCCceEEEEecCCcceEEEEe
Confidence 1222333 888855 4 689999999999999999998876521
Q ss_pred ccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCC
Q 001109 270 SKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTD 349 (1155)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~ 349 (1155)
- . | .-.=+++|-+ ++|.+||+|+..|.|.|+|..+..... ...|
T Consensus 384 D-----~-----------G-------------~v~gts~~~S-~ng~ylA~GS~~GiVNIYd~~s~~~s~------~PkP 427 (514)
T KOG2055|consen 384 D-----D-----------G-------------SVHGTSLCIS-LNGSYLATGSDSGIVNIYDGNSCFAST------NPKP 427 (514)
T ss_pred e-----c-----------C-------------ccceeeeeec-CCCceEEeccCcceEEEeccchhhccC------CCCc
Confidence 0 0 0 1123578887 899999999999999999976643211 1233
Q ss_pred cccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEE
Q 001109 350 FGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVL 429 (1155)
Q Consensus 350 i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~ 429 (1155)
+..+. .-...|..|.|++ ++++++..+... ...++++.+...+-...+. ..-..-+.+..|.|
T Consensus 428 ik~~d----NLtt~Itsl~Fn~-------d~qiLAiaS~~~--knalrLVHvPS~TVFsNfP----~~n~~vg~vtc~aF 490 (514)
T KOG2055|consen 428 IKTVD----NLTTAITSLQFNH-------DAQILAIASRVK--KNALRLVHVPSCTVFSNFP----TSNTKVGHVTCMAF 490 (514)
T ss_pred hhhhh----hhheeeeeeeeCc-------chhhhhhhhhcc--ccceEEEeccceeeeccCC----CCCCcccceEEEEe
Confidence 33221 1123577787764 566776665532 2445555432111000000 00111245667888
Q ss_pred ecCCCCCCCceeEEEEcCCCeeEEecCC
Q 001109 430 LPNGMNESHGTLPCVLTNPGKLQVYDRP 457 (1155)
Q Consensus 430 ~~~~~~~~~~~~l~v~~~~G~l~~~d~~ 457 (1155)
.|.++ .++++...|++.+|.+.
T Consensus 491 SP~sG------~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 491 SPNSG------YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cCCCc------eEEeecCCCceeeEeec
Confidence 88776 78888889999999754
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.65 E-value=1.1e-14 Score=166.54 Aligned_cols=164 Identities=15% Similarity=0.048 Sum_probs=113.3
Q ss_pred ccCCcCcEEEEEEC-CCcEEEEeCCCCCeeeeeeeCCCcCccccCCC---CCCeEEEEEecCCCeEEEEeCCCeEEEEEe
Q 001109 546 EDYLVERLYIAGYR-DGSTRIWDATYPTLSLIHVFGSELPGIRTATE---SESVSALEFCSVTLNLAIGSSSGLVWLYNL 621 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~-DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh---~~~V~~lafspdg~~Lasgs~dG~V~lwd~ 621 (1155)
.+..|...|||++. |++|||||+..... .+..+. ........| ...+++|..+..|.+|.+...|+.|++|++
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~--~~r~ep-~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm 300 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYT--AYRQEP-RGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNM 300 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeeccccc--ccccCC-CcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEec
Confidence 35588889999988 99999999987641 122211 000011122 346889999998998887778999999999
Q ss_pred ccCccccceeeeccCCceEEEecCCCCCceeEEeecCCC-Ce-EEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEecc
Q 001109 622 IKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNS-PI-CNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDS 699 (1155)
Q Consensus 622 ~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~-~V-tslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~ 699 (1155)
...... +...+.+|.- .+ ..=..|||+.+|++|+.|..+.+|.+..+..-- .+
T Consensus 301 ~s~s~s-----------------------P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~--~~ 355 (720)
T KOG0321|consen 301 RSLSIS-----------------------PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP--AL 355 (720)
T ss_pred cccCcC-----------------------chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh--hh
Confidence 875321 1112222211 11 112369999999999999999999999865432 23
Q ss_pred CCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCC
Q 001109 700 LSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTG 758 (1155)
Q Consensus 700 ~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG 758 (1155)
+.||.-.|++++|.+. ++.. +++++.|.+++||++..|
T Consensus 356 l~Ght~eVt~V~w~pS--------------------~~t~-v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 356 LLGHTREVTTVRWLPS--------------------ATTP-VATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhCcceEEEEEeeccc--------------------cCCC-ceeeccCcceEEEeccCc
Confidence 5689999999999843 3333 566799999999998654
No 145
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.64 E-value=2.4e-14 Score=163.92 Aligned_cols=237 Identities=18% Similarity=0.251 Sum_probs=148.0
Q ss_pred ccCCCCCceEEEEcCC---CCEEEEEEcCCeEEEEccCCceEE-----E--EcCCCCCEEEEEEEcCCcEEEEEecCCeE
Q 001109 38 HYGIPSTASILAFDHV---QSLLAIGTQDGRIKVIGGDNIEGL-----L--VSPKQLAFKHLEFLQNQGFLVSISSGNEI 107 (1155)
Q Consensus 38 ~~G~~~~vs~lafsp~---g~lLAsgs~DG~I~vw~~~~~~~~-----~--~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I 107 (1155)
..|.+-+..+..|++. -++||++-.||-|.+||....... + -.-|..+|-.+.+.|....||+++.|.++
T Consensus 45 ~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 45 NDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred cCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCcee
Confidence 3455555556777764 368999999999999997654322 1 12367799999999977899999999999
Q ss_pred EEEECCCCceeee--ecCC-CceeEEEEecCCC-EEEEEeCCCcEEEEEecCCCceee----ccceeccCCceeeeceeE
Q 001109 108 QLWDLEARRITST--LPWE-SNITAFSVIFGTS-YMYIGDEYGMVYVLKYDTEEGKLI----HSPYYVPKDVIEVFNHLL 179 (1155)
Q Consensus 108 ~vWDl~t~~~~~~--l~~~-~~Vtsva~spd~~-~l~~G~~dG~V~vw~~d~~~~~l~----~~~~~i~~~~~~~~~~~~ 179 (1155)
++||+++.+++.. +.+| +.|.+++|.|... .+++|+.||.|.||+.-...-... .+.|-.++.
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~--------- 195 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT--------- 195 (720)
T ss_pred eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC---------
Confidence 9999999998876 5666 8899999999766 678899999999996543210000 000000000
Q ss_pred eeEecccccccccccccccceeeecCCCCCCCc-ccc-cccccccceeeEEEEeecccccccccccEEEEEEc-CCeEEE
Q 001109 180 LEFCPNHIQREKGKAAFNASLLFYCMPPDESGF-IDF-IIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYA-NGLIIL 256 (1155)
Q Consensus 180 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~-dG~I~l 256 (1155)
.|.. ..+...+. ... ....+.+ .|+.+.|.-+ ..|+++++ |+.|++
T Consensus 196 ---~ptp------------------skp~~kr~~k~kA~s~ti~s-svTvv~fkDe---------~tlaSaga~D~~iKV 244 (720)
T KOG0321|consen 196 ---APTP------------------SKPLKKRIRKWKAASNTIFS-SVTVVLFKDE---------STLASAGAADSTIKV 244 (720)
T ss_pred ---CCCC------------------CchhhccccccccccCceee-eeEEEEEecc---------ceeeeccCCCcceEE
Confidence 0000 00000000 000 1122333 4555777654 46999888 999999
Q ss_pred EEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 257 WDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 257 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
||+++......... .+...-..| ++ ..-.+++++.. ..|.+|.....|+.|++||+.+
T Consensus 245 WDLRk~~~~~r~ep----------~~~~~~~t~--sk-------rs~G~~nL~lD-ssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 245 WDLRKNYTAYRQEP----------RGSDKYPTH--SK-------RSVGQVNLILD-SSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred EeecccccccccCC----------CcccCccCc--cc-------ceeeeEEEEec-CCCCeEEEEecCCcEEEEeccc
Confidence 99987765432100 000000000 00 12346677766 5678887777899999998865
No 146
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=3.9e-16 Score=143.32 Aligned_cols=63 Identities=32% Similarity=0.636 Sum_probs=58.9
Q ss_pred CCCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 001109 1083 SRTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWWQ 1154 (1155)
Q Consensus 1083 ~~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~~~~~ww~ 1154 (1155)
.+++++.+++ ||||++||++|++|+|||||||++|++||+.|+++|+.|.++|.+|||+ ||||
T Consensus 28 ~~k~~~tq~Q-----vdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk----~wWk 90 (116)
T KOG0860|consen 28 NDKLQQTQAQ-----VDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRK----MWWK 90 (116)
T ss_pred hHHHHHHHHH-----HHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 4456667777 8999999999999999999999999999999999999999999999999 9997
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.2e-14 Score=151.88 Aligned_cols=273 Identities=11% Similarity=0.104 Sum_probs=165.7
Q ss_pred eccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCc----eEEEEc-CCCCCEEEEEEEcC--CcEEEEEecCCeEEE
Q 001109 37 LHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNI----EGLLVS-PKQLAFKHLEFLQN--QGFLVSISSGNEIQL 109 (1155)
Q Consensus 37 ~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~----~~~~~~-~~~~~V~~l~Fs~d--g~~LvS~s~Dg~I~v 109 (1155)
+..||..-|.++.|++-|+++|+++.|++|+||+.... .+...- -|.+.|..+.|.+. |+.++++|.|+++.|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 45688889999999999999999999999999994322 222111 35778999999764 678999999999999
Q ss_pred EECCCCc---------eeeeecC-CCceeEEEEecC--CCEEEEEeCCCcEEEEEecC----CCceeecccee---ccCC
Q 001109 110 WDLEARR---------ITSTLPW-ESNITAFSVIFG--TSYMYIGDEYGMVYVLKYDT----EEGKLIHSPYY---VPKD 170 (1155)
Q Consensus 110 WDl~t~~---------~~~~l~~-~~~Vtsva~spd--~~~l~~G~~dG~V~vw~~d~----~~~~l~~~~~~---i~~~ 170 (1155)
|.=.... ...++.. .+.|+.+.|.|. |-.|++.+.||.+||+..-. ...+|. ..+. .|-.
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq-~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ-HEIQNVIDPPG 166 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh-hhhhhccCCcc
Confidence 9742111 2233433 378999999986 66889999999999975321 111111 0000 0000
Q ss_pred ceeeeceeEeeEeccccccccccccccc------ceeeecCCCCCC----Ccccc-cccccccceeeEEEEeeccccccc
Q 001109 171 VIEVFNHLLLEFCPNHIQREKGKAAFNA------SLLFYCMPPDES----GFIDF-IIRSKLRFFVEIRLLQFQKHVNST 239 (1155)
Q Consensus 171 ~~~~~~~~~l~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~-~~~~v~~~~v~~v~~~p~~~~~~~ 239 (1155)
. ..-+..++.|+|.....-+-.+..+. ..++|.-..... ..++. +..+|. .|+|.|+-..
T Consensus 167 ~-~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~-----di~wAPn~Gr--- 237 (361)
T KOG2445|consen 167 K-NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIR-----DISWAPNIGR--- 237 (361)
T ss_pred c-ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcce-----eeeeccccCC---
Confidence 0 01123477787655322211111111 334443322210 11111 133444 4999997421
Q ss_pred ccccEEEEEEcCCeEEEEEccCCeE-EEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeE
Q 001109 240 LGFSQLLLVYANGLIILWDVSEDKV-VLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVL 318 (1155)
Q Consensus 240 ~~~~~llsg~~dG~I~lWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~l 318 (1155)
...+|++|+.|| |+||.+..... +...+ . .+....+...-....+...|.++|..++|+ -.|..|
T Consensus 238 -~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee---------~--~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN-mtGtiL 303 (361)
T KOG2445|consen 238 -SYHLLAVATKDG-VRIFKVKVARSAIEEEE---------V--LAPDLMTDLPVEKVSELDDHNGEVWRVRWN-MTGTIL 303 (361)
T ss_pred -ceeeEEEeecCc-EEEEEEeeccchhhhhc---------c--cCCCCccccceEEeeeccCCCCceEEEEEe-eeeeEE
Confidence 126799999999 99999874321 10000 0 000001111111122334589999999999 899999
Q ss_pred EEEEcCCcEEEEEcC
Q 001109 319 AVGYVDGDILLWNLR 333 (1155)
Q Consensus 319 asg~~DG~I~lWd~~ 333 (1155)
++.+.||.||+|...
T Consensus 304 sStGdDG~VRLWkan 318 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKAN 318 (361)
T ss_pred eecCCCceeeehhhh
Confidence 999999999999653
No 148
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.62 E-value=1e-14 Score=157.86 Aligned_cols=150 Identities=12% Similarity=0.171 Sum_probs=119.8
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCC-CeEEEEeCCCeEEEEEeccCcccccee
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVT-LNLAIGSSSGLVWLYNLIKSSNEETLN 631 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg-~~Lasgs~dG~V~lwd~~~~~~~~~~~ 631 (1155)
.|+||---+.|++|...++. .... ...+.+|+..|..|+|||.- ..+|+|+.||+|+|||++..+...
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~----W~vd----~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~--- 294 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGS----WKVD----QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA--- 294 (440)
T ss_pred ccccCccccceEeeeeccCc----eeec----CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc---
Confidence 47788777889999988876 2221 22345899999999999974 578999999999999999864321
Q ss_pred eeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCC---ccEEEEeccCCCCCCCee
Q 001109 632 LVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDIST---FSVLFITDSLSNSNSPVL 708 (1155)
Q Consensus 632 ~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~---~~~l~~~~~~~~h~~~V~ 708 (1155)
| .....|++.|+.|.|+.+-.+||+|+.||+++|||+++ ++.+.++ ..|..||+
T Consensus 295 -------------------~-~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f---k~Hk~pIt 351 (440)
T KOG0302|consen 295 -------------------A-VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF---KYHKAPIT 351 (440)
T ss_pred -------------------e-eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE---EeccCCee
Confidence 1 23378999999999999988999999999999999986 3333332 45999999
Q ss_pred EEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC
Q 001109 709 YLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 709 slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t 757 (1155)
++.|++ .+...|++++.|..|.|||+..
T Consensus 352 sieW~p---------------------~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 352 SIEWHP---------------------HEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred EEEecc---------------------ccCceEEeccCCCcEEEEEeec
Confidence 999995 4566899999999999999753
No 149
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1e-13 Score=165.04 Aligned_cols=254 Identities=15% Similarity=0.199 Sum_probs=181.6
Q ss_pred ceeeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCc-eEEEEcC-CCCCEEEEEEEcCCcEEEEEecCCeEEEEE
Q 001109 34 RVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNI-EGLLVSP-KQLAFKHLEFLQNQGFLVSISSGNEIQLWD 111 (1155)
Q Consensus 34 ~~~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~-~~~~~~~-~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWD 111 (1155)
+...||+|...-+.|+|+|+|+.|.+++.||.|++|+.... +-.-... +...|.+++- ++.+|++++.+++|.++.
T Consensus 5 r~klRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 5 RLKLRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYK 82 (933)
T ss_pred cccchhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEee
Confidence 45567999999999999999999999999999999986554 2211111 3445555544 455899999999999999
Q ss_pred CCCCceeeee-cCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccc
Q 001109 112 LEARRITSTL-PWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQRE 190 (1155)
Q Consensus 112 l~t~~~~~~l-~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~ 190 (1155)
...+..-.-+ ++.-++++++|+.+|.+++.|++|-.|++.+.+....+...
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l---------------------------- 134 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL---------------------------- 134 (933)
T ss_pred CCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee----------------------------
Confidence 9877543222 23457899999999999999999999999877664422210
Q ss_pred ccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecc
Q 001109 191 KGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGS 270 (1155)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~ 270 (1155)
.++..+|.+ +.|+|.+ +.||+..-||.|++||+.++.+....+.
T Consensus 135 -----------------------rgh~apVl~-----l~~~p~~--------~fLAvss~dG~v~iw~~~~~~~~~tl~~ 178 (933)
T KOG1274|consen 135 -----------------------RGHDAPVLQ-----LSYDPKG--------NFLAVSSCDGKVQIWDLQDGILSKTLTG 178 (933)
T ss_pred -----------------------cccCCceee-----eeEcCCC--------CEEEEEecCceEEEEEcccchhhhhccc
Confidence 013455666 9999984 5799999999999999999887765322
Q ss_pred cccccccccccCCCCCCCCCCcccccccccc-cCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCC
Q 001109 271 KDLQLKTEIVDDPSKNAGHNLSETVSDNEQV-EKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTD 349 (1155)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~ 349 (1155)
. +.. ++-. ...++.++|+ |+|..||....|++|++++..+.....
T Consensus 179 v-----------~k~------------n~~~~s~i~~~~aW~-Pk~g~la~~~~d~~Vkvy~r~~we~~f---------- 224 (933)
T KOG1274|consen 179 V-----------DKD------------NEFILSRICTRLAWH-PKGGTLAVPPVDNTVKVYSRKGWELQF---------- 224 (933)
T ss_pred C-----------Ccc------------ccccccceeeeeeec-CCCCeEEeeccCCeEEEEccCCceehe----------
Confidence 0 000 0001 4567789999 999999999999999999988765322
Q ss_pred cccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEcc
Q 001109 350 FGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLN 402 (1155)
Q Consensus 350 i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~ 402 (1155)
.|+...+..-+..+.|++ .|..+++++-+ +.+.+|.++
T Consensus 225 ----~Lr~~~~ss~~~~~~wsP-------nG~YiAAs~~~----g~I~vWnv~ 262 (933)
T KOG1274|consen 225 ----KLRDKLSSSKFSDLQWSP-------NGKYIAASTLD----GQILVWNVD 262 (933)
T ss_pred ----eecccccccceEEEEEcC-------CCcEEeeeccC----CcEEEEecc
Confidence 122333333488889986 35555555543 567787765
No 150
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.61 E-value=3.5e-13 Score=153.94 Aligned_cols=174 Identities=18% Similarity=0.261 Sum_probs=127.7
Q ss_pred CCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeec
Q 001109 84 LAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIH 162 (1155)
Q Consensus 84 ~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~ 162 (1155)
..|..++|.|||..|+.+. ++.+.++|...|.++.++++| ..|.|++++.||+.+++|+.|..|-+|.-..+ |.+.
T Consensus 13 hci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~Lk- 89 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GILK- 89 (1081)
T ss_pred cchheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-ceee-
Confidence 3788999999998887664 678999999999999999988 78999999999999999999999999853322 1110
Q ss_pred cceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccc
Q 001109 163 SPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGF 242 (1155)
Q Consensus 163 ~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~ 242 (1155)
.+|...+- ++.|+|...
T Consensus 90 ---------------------------------------------------YSH~D~IQ-----CMsFNP~~h------- 106 (1081)
T KOG1538|consen 90 ---------------------------------------------------YSHNDAIQ-----CMSFNPITH------- 106 (1081)
T ss_pred ---------------------------------------------------eccCCeee-----EeecCchHH-------
Confidence 01223333 499999853
Q ss_pred cEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEE
Q 001109 243 SQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGY 322 (1155)
Q Consensus 243 ~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~ 322 (1155)
.|++++- ...-+|......+.+.+ ....|.+.+|. .||++||-|.
T Consensus 107 -~LasCsL-sdFglWS~~qK~V~K~k--------------------------------ss~R~~~CsWt-nDGqylalG~ 151 (1081)
T KOG1538|consen 107 -QLASCSL-SDFGLWSPEQKSVSKHK--------------------------------SSSRIICCSWT-NDGQYLALGM 151 (1081)
T ss_pred -Hhhhcch-hhccccChhhhhHHhhh--------------------------------hheeEEEeeec-CCCcEEEEec
Confidence 3555544 46679987765554321 14568899999 9999999999
Q ss_pred cCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEeccc
Q 001109 323 VDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAE 372 (1155)
Q Consensus 323 ~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~ 372 (1155)
.||+|.+-+-...... +++ +.++...||+++.|+++
T Consensus 152 ~nGTIsiRNk~gEek~-------------~I~-Rpgg~Nspiwsi~~~p~ 187 (1081)
T KOG1538|consen 152 FNGTISIRNKNGEEKV-------------KIE-RPGGSNSPIWSICWNPS 187 (1081)
T ss_pred cCceEEeecCCCCcce-------------EEe-CCCCCCCCceEEEecCC
Confidence 9999999754433221 121 23456688999999873
No 151
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.61 E-value=9.6e-14 Score=153.94 Aligned_cols=154 Identities=10% Similarity=0.058 Sum_probs=100.8
Q ss_pred EEEEEECCCcEEEEeCCCCCee---eeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccC-cccc
Q 001109 553 LYIAGYRDGSTRIWDATYPTLS---LIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKS-SNEE 628 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~---~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~-~~~~ 628 (1155)
+|||+|-|+|++|||+..-.-. .++. -.|+.+|.+..|||++..|++.+.|..|+|||-.-- ....
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst----------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~ 406 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLST----------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE 406 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceec----------ccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC
Confidence 7899999999999998653211 1222 268889999999999999999999999999997410 0000
Q ss_pred ceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCee
Q 001109 629 TLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVL 708 (1155)
Q Consensus 629 ~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~ 708 (1155)
. ...+.+...-.+|+. ..-.+|.||..++++|-.-..|-|+|-..++.+...+- .....|.
T Consensus 407 p---------~~~I~Hn~~t~RwlT--------~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~--P~~~tI~ 467 (498)
T KOG4328|consen 407 P---------LGTIPHNNRTGRWLT--------PFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD--PESSTIP 467 (498)
T ss_pred c---------cceeeccCccccccc--------chhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC--ccccccc
Confidence 0 001111111112222 22357999999999999999999999999887665422 1122344
Q ss_pred EE-EEeecCCCCccccCCCCCCCCCCCCCCCc-EEEEEeCCceEEEEECCC
Q 001109 709 YL-AVKSLSDTSNLTISPKDSDINSSNDTKKE-TLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 709 sl-afs~~~~~~~~~~~~~~~~~~~~~~pd~~-~L~s~s~Dg~I~vwd~~t 757 (1155)
++ .|. |-+. +++-++.-|.|.||--..
T Consensus 468 ~vn~~H----------------------P~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 468 SVNEFH----------------------PMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cceeec----------------------ccccceeccCCccceEEEEecCC
Confidence 43 344 4445 555566678888886543
No 152
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=8.1e-16 Score=177.88 Aligned_cols=192 Identities=19% Similarity=0.250 Sum_probs=155.5
Q ss_pred ccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCc
Q 001109 38 HYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARR 116 (1155)
Q Consensus 38 ~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~ 116 (1155)
.+||.+.|-+|.|+++..+||.|+.+|+|||||......+.++ .|...+..|.|+|-+.|.++++.|..+++||....-
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G 145 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG 145 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC
Confidence 4899999999999999999999999999999999876555443 567889999999999999999999999999999888
Q ss_pred eeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccc
Q 001109 117 ITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAA 195 (1155)
Q Consensus 117 ~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~ 195 (1155)
|.+++.+| ..|.++.|+|+|+|++.|++|.++++|+.. .|++.. .| . .
T Consensus 146 c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~--agk~~~-ef--~-----------------------~--- 194 (825)
T KOG0267|consen 146 CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT--AGKLSK-EF--K-----------------------S--- 194 (825)
T ss_pred ceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc--cccccc-cc--c-----------------------c---
Confidence 99999877 668889999999999999999999999543 333320 00 0 0
Q ss_pred cccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccccc
Q 001109 196 FNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQL 275 (1155)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~ 275 (1155)
+..++.. +.|+|..- +++.|+.|++|++||+.+-.++...+
T Consensus 195 --------------------~e~~v~s-----le~hp~e~--------Lla~Gs~d~tv~f~dletfe~I~s~~------ 235 (825)
T KOG0267|consen 195 --------------------HEGKVQS-----LEFHPLEV--------LLAPGSSDRTVRFWDLETFEVISSGK------ 235 (825)
T ss_pred --------------------ccccccc-----cccCchhh--------hhccCCCCceeeeeccceeEEeeccC------
Confidence 1234444 77888742 58899999999999998777664311
Q ss_pred ccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcC
Q 001109 276 KTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVD 324 (1155)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~D 324 (1155)
++...|.+..|+ +||..+++|-.+
T Consensus 236 ------------------------~~~~~v~~~~fn-~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 ------------------------PETDGVRSLAFN-PDGKIVLSGEQI 259 (825)
T ss_pred ------------------------CccCCceeeeec-CCceeeecCchh
Confidence 125679999999 999999998665
No 153
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.61 E-value=1.4e-14 Score=150.41 Aligned_cols=155 Identities=20% Similarity=0.232 Sum_probs=118.4
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCc-CccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcccccee
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSEL-PGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLN 631 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~-~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~ 631 (1155)
+|+.|+++|.|-+||++.+.. +..++... .......|..+|.+|.|.+.-..=++|+.+..+..|.++........
T Consensus 167 lllaGyEsghvv~wd~S~~~~--~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~- 243 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDK--IIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI- 243 (323)
T ss_pred EEEEeccCCeEEEEEccCCce--eeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc-
Confidence 789999999999999998741 11121100 01124478889999999987777788999999999999764321000
Q ss_pred eeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEE
Q 001109 632 LVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLA 711 (1155)
Q Consensus 632 ~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~sla 711 (1155)
.......+..|..+.+-||++.||++++|+.|||+.-++...+. ++.-|++.|.+|+
T Consensus 244 --------------------~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA---VLkyHsagvn~vA 300 (323)
T KOG0322|consen 244 --------------------RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA---VLKYHSAGVNAVA 300 (323)
T ss_pred --------------------cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh---hhhhhhcceeEEE
Confidence 01112234458889999999999999999999999999877664 3456999999999
Q ss_pred EeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC
Q 001109 712 VKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 712 fs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
|+ ||..++++||+|++|-+|++
T Consensus 301 fs----------------------pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 301 FS----------------------PDCELMAAASKDARISLWKL 322 (323)
T ss_pred eC----------------------CCCchhhhccCCceEEeeec
Confidence 99 88899999999999999986
No 154
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=4.2e-15 Score=173.42 Aligned_cols=145 Identities=21% Similarity=0.289 Sum_probs=113.7
Q ss_pred cEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecC-CCeEEEEeCCCeEEEEEeccCccccce
Q 001109 552 RLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSV-TLNLAIGSSSGLVWLYNLIKSSNEETL 630 (1155)
Q Consensus 552 ~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspd-g~~Lasgs~dG~V~lwd~~~~~~~~~~ 630 (1155)
.+|+|||+||+||+||+........ ..+....|..|.|+|. +..++++.+.|.+++||++...
T Consensus 147 ~iliSGSQDg~vK~~DlR~~~S~~t-----------~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~----- 210 (839)
T KOG0269|consen 147 NILISGSQDGTVKCWDLRSKKSKST-----------FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD----- 210 (839)
T ss_pred cEEEecCCCceEEEEeeeccccccc-----------ccccchhhhceeeccCCCceEEEecCCceEEEeeccCch-----
Confidence 3899999999999999977652211 1134568999999995 6688999999999999998743
Q ss_pred eeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccE--EEEeccCCCCCCCee
Q 001109 631 NLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSV--LFITDSLSNSNSPVL 708 (1155)
Q Consensus 631 ~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~--l~~~~~~~~h~~~V~ 708 (1155)
+|...|..|+|+|.|+.|+|++.+||||+.|++|+|||+.++.. +++++ ...||.
T Consensus 211 -------------------r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn----Tiapv~ 267 (839)
T KOG0269|consen 211 -------------------RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN----TIAPVG 267 (839)
T ss_pred -------------------hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe----ecceee
Confidence 23456789999999999999999999999999999999987543 34433 467999
Q ss_pred EEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEE--eCCceEEEEECC
Q 001109 709 YLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFM--TKDAHIVVCDST 756 (1155)
Q Consensus 709 slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~--s~Dg~I~vwd~~ 756 (1155)
.|.|.|.. ...|++. ..|-.|.|||+.
T Consensus 268 rVkWRP~~---------------------~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 268 RVKWRPAR---------------------SYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred eeeeccCc---------------------cchhhhhhccccceEEEEeec
Confidence 99998432 1345544 458999999975
No 155
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=8.2e-14 Score=158.31 Aligned_cols=201 Identities=15% Similarity=0.137 Sum_probs=137.6
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcE-EEEEecCCeEEEEECCCCc-
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGF-LVSISSGNEIQLWDLEARR- 116 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~-LvS~s~Dg~I~vWDl~t~~- 116 (1155)
.||.+.|.+|+.+|.|.+||+|+.||+|+||...++.++....-...|++|+|+|.+.. ++++..++.+-|-|..-|.
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~ 476 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDR 476 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccch
Confidence 59999999999999999999999999999999999999887766778999999998653 3444444445555443321
Q ss_pred --------e-----------------------------eeeecCCCceeEEEEecCCCEEEEEeCC-CcEEEEEecCCCc
Q 001109 117 --------I-----------------------------TSTLPWESNITAFSVIFGTSYMYIGDEY-GMVYVLKYDTEEG 158 (1155)
Q Consensus 117 --------~-----------------------------~~~l~~~~~Vtsva~spd~~~l~~G~~d-G~V~vw~~d~~~~ 158 (1155)
+ ..++.....|+.+.++..|+||++...+ |+-.|+..+...+
T Consensus 477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~ 556 (733)
T KOG0650|consen 477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR 556 (733)
T ss_pred hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccc
Confidence 0 1122233568889999999999876543 3323333333221
Q ss_pred eeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccc
Q 001109 159 KLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNS 238 (1155)
Q Consensus 159 ~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~ 238 (1155)
..+.||+- ..+.+.. +.|||...
T Consensus 557 -~sQ~PF~k------------------------------------------------skG~vq~-----v~FHPs~p--- 579 (733)
T KOG0650|consen 557 -KSQSPFRK------------------------------------------------SKGLVQR-----VKFHPSKP--- 579 (733)
T ss_pred -cccCchhh------------------------------------------------cCCceeE-----EEecCCCc---
Confidence 12222211 0222333 89999864
Q ss_pred cccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeE
Q 001109 239 TLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVL 318 (1155)
Q Consensus 239 ~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~l 318 (1155)
+|++++. ..|+++|+..+.+++..- . ....|.+++.+ |.|.-|
T Consensus 580 -----~lfVaTq-~~vRiYdL~kqelvKkL~------t------------------------g~kwiS~msih-p~GDnl 622 (733)
T KOG0650|consen 580 -----YLFVATQ-RSVRIYDLSKQELVKKLL------T------------------------GSKWISSMSIH-PNGDNL 622 (733)
T ss_pred -----eEEEEec-cceEEEehhHHHHHHHHh------c------------------------CCeeeeeeeec-CCCCeE
Confidence 4776665 578999998766553200 0 14668889998 899999
Q ss_pred EEEEcCCcEEEEEcC
Q 001109 319 AVGYVDGDILLWNLR 333 (1155)
Q Consensus 319 asg~~DG~I~lWd~~ 333 (1155)
+.|+.|+.+..+|+.
T Consensus 623 i~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLD 637 (733)
T ss_pred EEecCCCeeEEEEcc
Confidence 999999998888764
No 156
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2e-13 Score=144.85 Aligned_cols=160 Identities=13% Similarity=0.094 Sum_probs=108.7
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
.|.+.|+++++|..-|.+-++|+.+-.+..-+.+.. ...|..+.|+..|+.|++-+.|..||.|++..--
T Consensus 160 ~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits----------~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 160 VFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS----------VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred cccCCCCEEEEecCcceEEEEecchheeeeeeeech----------heeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence 467888999999999999999998776332222221 1278899999999999999999999999987421
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeec--CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEecCCccEEEEeccCCC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSV--LNSPICNLKFSNFGARLAVGFE-CSQVAMLDISTFSVLFITDSLSN 702 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~--h~~~VtslafSpdg~~LAsGs~-Dg~V~lWDi~~~~~l~~~~~~~~ 702 (1155)
..+. .+++ .+.+.+.. ...+=.++.||.||.++..|+. ...+.||.-..|.++.-. .|
T Consensus 230 ~~~r-------~~e~---------e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL---hG 290 (405)
T KOG1273|consen 230 DEGR-------DGEV---------EPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL---HG 290 (405)
T ss_pred ccCc-------cCCc---------ChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeee---cC
Confidence 1000 0000 00010100 0122356889999999877764 456999999999988644 34
Q ss_pred CC-CCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC
Q 001109 703 SN-SPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 703 h~-~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t 757 (1155)
.. -....+.|. |-..++++- ..|+|.||....
T Consensus 291 ~kgE~l~DV~wh----------------------p~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 291 TKGEELLDVNWH----------------------PVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred Cchhheeecccc----------------------cceeeeeec-cCCceEEEEeec
Confidence 44 456778887 444456666 778999998653
No 157
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=5.6e-14 Score=155.44 Aligned_cols=203 Identities=15% Similarity=0.209 Sum_probs=139.9
Q ss_pred EEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccE
Q 001109 228 RLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISS 307 (1155)
Q Consensus 228 v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~s 307 (1155)
++|+-.-. +.|++|+.|.+|++||+.++++.....+ |.+.|.+
T Consensus 249 Ls~n~~~~-------nVLaSgsaD~TV~lWD~~~g~p~~s~~~------------------------------~~k~Vq~ 291 (463)
T KOG0270|consen 249 LSWNRNFR-------NVLASGSADKTVKLWDVDTGKPKSSITH------------------------------HGKKVQT 291 (463)
T ss_pred HHhccccc-------eeEEecCCCceEEEEEcCCCCcceehhh------------------------------cCCceeE
Confidence 77776644 5899999999999999999998876321 5889999
Q ss_pred EEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecC
Q 001109 308 LCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGG 387 (1155)
Q Consensus 308 l~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg 387 (1155)
+.|++....+|++|+.||+|.+.|.+..... ...|.. .|.
T Consensus 292 l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s---------------------------~~~wk~-------------~g~ 331 (463)
T KOG0270|consen 292 LEWHPYEPSVLLSGSYDGTVALKDCRDPSNS---------------------------GKEWKF-------------DGE 331 (463)
T ss_pred EEecCCCceEEEeccccceEEeeeccCcccc---------------------------CceEEe-------------ccc
Confidence 9999667899999999999999998852110 012221 000
Q ss_pred CCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccc
Q 001109 388 DEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEK 467 (1155)
Q Consensus 388 ~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~ 467 (1155)
+.-+.|+ .+....+++.+.+|.++-+|.+.
T Consensus 332 --------VEkv~w~---------------------------------~~se~~f~~~tddG~v~~~D~R~--------- 361 (463)
T KOG0270|consen 332 --------VEKVAWD---------------------------------PHSENSFFVSTDDGTVYYFDIRN--------- 361 (463)
T ss_pred --------eEEEEec---------------------------------CCCceeEEEecCCceEEeeecCC---------
Confidence 1111111 11233667788999999999863
Q ss_pred cccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCccccccc
Q 001109 468 KKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAED 547 (1155)
Q Consensus 468 ~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~ 547 (1155)
..+..+++..|+..|+++.+..
T Consensus 362 ------~~~~vwt~~AHd~~ISgl~~n~---------------------------------------------------- 383 (463)
T KOG0270|consen 362 ------PGKPVWTLKAHDDEISGLSVNI---------------------------------------------------- 383 (463)
T ss_pred ------CCCceeEEEeccCCcceEEecC----------------------------------------------------
Confidence 2244567778888888776531
Q ss_pred CCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCC-eEEEEeCCCeEEEEEeccCc
Q 001109 548 YLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTL-NLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 548 s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~-~Lasgs~dG~V~lwd~~~~~ 625 (1155)
....+++|++.|++|++|++..........-. +.+ +...|.+++|+-. +||.|+..+.++|||+.+..
T Consensus 384 -~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~-----~~~----~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 384 -QTPGLLSTASTDKVVKLWKFDVDSPKSVKEHS-----FKL----GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred -CCCcceeeccccceEEEEeecCCCCccccccc-----ccc----cceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 11237899999999999998765422111110 111 1366888888754 67899999999999998764
No 158
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=8.2e-14 Score=154.16 Aligned_cols=192 Identities=20% Similarity=0.252 Sum_probs=143.6
Q ss_pred CCCEEEEEEcCCeEEEEccCCc---eEEEEc-------------------CCCCCEEEEEEEcCC-cEEEEEecCCeEEE
Q 001109 53 VQSLLAIGTQDGRIKVIGGDNI---EGLLVS-------------------PKQLAFKHLEFLQNQ-GFLVSISSGNEIQL 109 (1155)
Q Consensus 53 ~g~lLAsgs~DG~I~vw~~~~~---~~~~~~-------------------~~~~~V~~l~Fs~dg-~~LvS~s~Dg~I~v 109 (1155)
.|+++|+|+-|-.|.|||.+-. ...+++ .|+.+|.+|+|..+- +.|+|+|.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3689999999999999986421 111111 255677788887753 57999999999999
Q ss_pred EECCCCceeeeecCC-CceeEEEEecC-CCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccc
Q 001109 110 WDLEARRITSTLPWE-SNITAFSVIFG-TSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHI 187 (1155)
Q Consensus 110 WDl~t~~~~~~l~~~-~~Vtsva~spd-~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~ 187 (1155)
||+.++++..++..| +.|.+++|+|. ..+|++|+.||+|.+. |.+. . ... ...|.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~--D~R~--~--------~~s-------~~~wk---- 327 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALK--DCRD--P--------SNS-------GKEWK---- 327 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEee--eccC--c--------ccc-------CceEE----
Confidence 999999999999866 79999999986 5689999999999776 3321 0 000 00111
Q ss_pred cccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCC-eEEE
Q 001109 188 QREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSED-KVVL 266 (1155)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~-~~~~ 266 (1155)
..+ .|+.++|.|... ..++++..||+|+-+|++.. +++.
T Consensus 328 ----------------------------~~g-----~VEkv~w~~~se-------~~f~~~tddG~v~~~D~R~~~~~vw 367 (463)
T KOG0270|consen 328 ----------------------------FDG-----EVEKVAWDPHSE-------NSFFVSTDDGTVYYFDIRNPGKPVW 367 (463)
T ss_pred ----------------------------ecc-----ceEEEEecCCCc-------eeEEEecCCceEEeeecCCCCCcee
Confidence 112 455599999876 47889999999999999865 5544
Q ss_pred EecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCC
Q 001109 267 VRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAAS 337 (1155)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~ 337 (1155)
. ++ .|..+|++++++...-.+++|++.|+.|++|++.....
T Consensus 368 t-------~~-----------------------AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 368 T-------LK-----------------------AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred E-------EE-----------------------eccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 3 12 16889999999855677899999999999999987543
No 159
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.56 E-value=9.8e-14 Score=144.15 Aligned_cols=73 Identities=16% Similarity=0.133 Sum_probs=61.8
Q ss_pred CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC--CceeEEEEecCCCEEEEEeCCCcEEEEEecC
Q 001109 81 PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE--SNITAFSVIFGTSYMYIGDEYGMVYVLKYDT 155 (1155)
Q Consensus 81 ~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~--~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~ 155 (1155)
++.+.|.++.|-.+ .+|+++..-|-|++|++.+.+....++.. ..|+.+...|+ +.|.+-+.|+.+.+|.++-
T Consensus 12 p~~~~v~s~~fqa~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 12 PHSSSVTSVLFQAN-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred cccchheehhhccc-hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 67788999999998 46999999999999999999988888743 67888988888 5567778899998887665
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.55 E-value=6.2e-13 Score=142.14 Aligned_cols=164 Identities=17% Similarity=0.246 Sum_probs=118.8
Q ss_pred CCCCEEEEEEEc----CCcEEEEEecCCeEEEEECCCC---ceeeeecCC---CceeEEEEecC----CCEEEEEeCCCc
Q 001109 82 KQLAFKHLEFLQ----NQGFLVSISSGNEIQLWDLEAR---RITSTLPWE---SNITAFSVIFG----TSYMYIGDEYGM 147 (1155)
Q Consensus 82 ~~~~V~~l~Fs~----dg~~LvS~s~Dg~I~vWDl~t~---~~~~~l~~~---~~Vtsva~spd----~~~l~~G~~dG~ 147 (1155)
+..+|..++|.+ +...+++....+++.++..... +++++...+ .....++++-+ ..++++|+.-|.
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~Gv 116 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGV 116 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeE
Confidence 457899999974 3345666556788889886533 344444322 44555666543 458999999999
Q ss_pred EEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeE
Q 001109 148 VYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEI 227 (1155)
Q Consensus 148 V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~ 227 (1155)
|+|.++... ++. .. -..+..+|..
T Consensus 117 IrVid~~~~--~~~-------~~------------------------------------------~~ghG~sINe----- 140 (385)
T KOG1034|consen 117 IRVIDVVSG--QCS-------KN------------------------------------------YRGHGGSINE----- 140 (385)
T ss_pred EEEEecchh--hhc-------cc------------------------------------------eeccCccchh-----
Confidence 998765442 221 00 0012334444
Q ss_pred EEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccE
Q 001109 228 RLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISS 307 (1155)
Q Consensus 228 v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~s 307 (1155)
+.++|..+ ++|++|+.|..|||||+++..++.+.|+ .++|..+|.+
T Consensus 141 ik~~p~~~-------qlvls~SkD~svRlwnI~~~~Cv~VfGG---------------------------~egHrdeVLS 186 (385)
T KOG1034|consen 141 IKFHPDRP-------QLVLSASKDHSVRLWNIQTDVCVAVFGG---------------------------VEGHRDEVLS 186 (385)
T ss_pred hhcCCCCC-------cEEEEecCCceEEEEeccCCeEEEEecc---------------------------cccccCcEEE
Confidence 99999865 6999999999999999999999998765 1246899999
Q ss_pred EEEEecCCCeEEEEEcCCcEEEEEcCCCC
Q 001109 308 LCWASNDGSVLAVGYVDGDILLWNLRAAA 336 (1155)
Q Consensus 308 l~~s~pdG~~lasg~~DG~I~lWd~~s~~ 336 (1155)
+.|+ .+|.+||+++.|-.|++|+++..+
T Consensus 187 vD~~-~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 187 VDFS-LDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred EEEc-CCCCeeeccCCcceEEEEecChhH
Confidence 9999 999999999999999999998643
No 161
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.5e-13 Score=144.12 Aligned_cols=201 Identities=15% Similarity=0.178 Sum_probs=146.6
Q ss_pred ceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEE-cCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecC
Q 001109 45 ASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLV-SPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPW 123 (1155)
Q Consensus 45 vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~-~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~ 123 (1155)
+.|+.|++-|.+||+|+.||+|-|||..+...-.. ..|..||++|+||++|+.|+++|.|+.|++||+..|.+++.+++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 89999999999999999999999999876443222 24677999999999999999999999999999999999999999
Q ss_pred CCceeEEEEecCCCEEEEEeC-CCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceee
Q 001109 124 ESNITAFSVIFGTSYMYIGDE-YGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLF 202 (1155)
Q Consensus 124 ~~~Vtsva~spd~~~l~~G~~-dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 202 (1155)
.++|+.+.|+|..+..++++- +..-.+..++.....+ +|. .+++
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~------Lp~-------------d~d~---------------- 150 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV------LPK-------------DDDG---------------- 150 (405)
T ss_pred cCccceeeeccccCCeEEEEEecCCcEEEEecCCceee------ccC-------------CCcc----------------
Confidence 999999999998765554431 1112222222211000 000 0000
Q ss_pred ecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccC
Q 001109 203 YCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDD 282 (1155)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~ 282 (1155)
.. ....-+ ..|.+. | +++++|...|.+.++|..+-+++.. ++..
T Consensus 151 ----------dl--n~sas~-----~~fdr~--g------~yIitGtsKGkllv~~a~t~e~vas-------~rit---- 194 (405)
T KOG1273|consen 151 ----------DL--NSSASH-----GVFDRR--G------KYIITGTSKGKLLVYDAETLECVAS-------FRIT---- 194 (405)
T ss_pred ----------cc--cccccc-----ccccCC--C------CEEEEecCcceEEEEecchheeeee-------eeec----
Confidence 00 000001 345554 4 7899999999999999999888764 1210
Q ss_pred CCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 283 PSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
....|..+.++ ..|+.|+.-..|..||.+++...
T Consensus 195 ------------------s~~~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 195 ------------------SVQAIKQIIVS-RKGRFLIINTSDRVIRTYEISDI 228 (405)
T ss_pred ------------------hheeeeEEEEe-ccCcEEEEecCCceEEEEehhhh
Confidence 02468889998 99999999999999999998753
No 162
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.55 E-value=4e-11 Score=139.47 Aligned_cols=336 Identities=24% Similarity=0.319 Sum_probs=224.7
Q ss_pred CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCc-eeeeecCC-C-ceeEEEE-ecCCC-EEEEEeC-CCcEEEEEec
Q 001109 81 PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARR-ITSTLPWE-S-NITAFSV-IFGTS-YMYIGDE-YGMVYVLKYD 154 (1155)
Q Consensus 81 ~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~-~~~~l~~~-~-~Vtsva~-spd~~-~l~~G~~-dG~V~vw~~d 154 (1155)
.+...+..+.|.+++..++.++.|+.+.+|+...+. .+..+... . .+..+.+ .+++. +++..+. ++.+++|++.
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence 456789999999999999999999999999999887 66666553 2 6777777 78887 4444344 8899998766
Q ss_pred CCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecc
Q 001109 155 TEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQK 234 (1155)
Q Consensus 155 ~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~ 234 (1155)
... ... ..+. . +...+. .+.|+|+.
T Consensus 143 ~~~-~~~---~~~~-----------------------~-----------------------~~~~v~-----~~~~~~~~ 167 (466)
T COG2319 143 TPG-KLI---RTLE-----------------------G-----------------------HSESVT-----SLAFSPDG 167 (466)
T ss_pred CCC-eEE---EEEe-----------------------c-----------------------CcccEE-----EEEECCCC
Confidence 411 000 0000 0 112222 38999974
Q ss_pred cccccccccEEEEEEc-CCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEec
Q 001109 235 HVNSTLGFSQLLLVYA-NGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASN 313 (1155)
Q Consensus 235 ~~~~~~~~~~llsg~~-dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~p 313 (1155)
..+++++. |+.+++|++.++..+.... .|...|.+++|+ |
T Consensus 168 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~v~~~~~~-~ 208 (466)
T COG2319 168 --------KLLASGSSLDGTIKLWDLRTGKPLSTLA------------------------------GHTDPVSSLAFS-P 208 (466)
T ss_pred --------CEEEecCCCCCceEEEEcCCCceEEeec------------------------------cCCCceEEEEEc-C
Confidence 35777775 9999999998866655411 147789999999 9
Q ss_pred CCC-eEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCC
Q 001109 314 DGS-VLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGS 392 (1155)
Q Consensus 314 dG~-~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~ 392 (1155)
++. .+++++.|+.|++||...+..
T Consensus 209 ~~~~~~~~~~~d~~i~~wd~~~~~~------------------------------------------------------- 233 (466)
T COG2319 209 DGGLLIASGSSDGTIRLWDLSTGKL------------------------------------------------------- 233 (466)
T ss_pred CcceEEEEecCCCcEEEEECCCCcE-------------------------------------------------------
Confidence 998 666669999999996542100
Q ss_pred cceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCC
Q 001109 393 EEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISS 472 (1155)
Q Consensus 393 ~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~ 472 (1155)
+.. .+.
T Consensus 234 ---~~~------------------------------------------------------~~~----------------- 239 (466)
T COG2319 234 ---LRS------------------------------------------------------TLS----------------- 239 (466)
T ss_pred ---Eee------------------------------------------------------ecC-----------------
Confidence 000 000
Q ss_pred CcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCc
Q 001109 473 SSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVER 552 (1155)
Q Consensus 473 ~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~ 552 (1155)
.|.... .. .|++++.
T Consensus 240 ----------~~~~~~-~~------------------------------------------------------~~~~~~~ 254 (466)
T COG2319 240 ----------GHSDSV-VS------------------------------------------------------SFSPDGS 254 (466)
T ss_pred ----------CCCcce-eE------------------------------------------------------eECCCCC
Confidence 000000 00 1223334
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceee
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNL 632 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~ 632 (1155)
.+++++.|+.+++||...... .+..+ .+|...|.++.|.|++..+++++.|+.+++|++........
T Consensus 255 ~~~~~~~d~~~~~~~~~~~~~-~~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--- 321 (466)
T COG2319 255 LLASGSSDGTIRLWDLRSSSS-LLRTL---------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS--- 321 (466)
T ss_pred EEEEecCCCcEEEeeecCCCc-EEEEE---------ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE---
Confidence 677899999999999976652 11222 25677999999999999999999999999997766432100
Q ss_pred eccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEecCCccEEEEeccCCCCCCCeeEEE
Q 001109 633 VTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVG-FECSQVAMLDISTFSVLFITDSLSNSNSPVLYLA 711 (1155)
Q Consensus 633 v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsG-s~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~sla 711 (1155)
.....|...|..++|++++..++++ ..|+.+.+|++.......... ....+..+.
T Consensus 322 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 377 (466)
T COG2319 322 --------------------LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE----GHSNVLSVS 377 (466)
T ss_pred --------------------eeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEec----CCceEEEEE
Confidence 0023677789999994443566666 688999999998876332221 122288888
Q ss_pred EeecCCCCccccCCCCCCCCCCCCCCCcEEE-EEeCCceEEEEECCCCceeeee
Q 001109 712 VKSLSDTSNLTISPKDSDINSSNDTKKETLF-FMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 712 fs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~-s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
|. + ....+ .+..++.+.+|+...+..+...
T Consensus 378 ~~----------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (466)
T COG2319 378 FS----------------------P-DGRVVSSGSTDGTVRLWDLSTGSLLRNL 408 (466)
T ss_pred EC----------------------C-CCCEEEEecCCCceEEEecccCeeeeec
Confidence 87 3 22333 3789999999999988876665
No 163
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.54 E-value=1.5e-13 Score=148.96 Aligned_cols=231 Identities=16% Similarity=0.236 Sum_probs=153.7
Q ss_pred Ccceeec-cCCCCCceEEEEcCCC--CEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEE
Q 001109 32 DPRVTLH-YGIPSTASILAFDHVQ--SLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQ 108 (1155)
Q Consensus 32 ~~~~~~~-~G~~~~vs~lafsp~g--~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~ 108 (1155)
.|..... -+|.+.++-+..++-| .++|+=+..|+|+||+....... ++.. +..+.-
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~-------------l~~~-~~~~~~------- 198 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNA-------------LSEP-GLEVKD------- 198 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhh-------------hcCc-cccccc-------
Confidence 4544443 3666677777777765 47777788899999987542111 1111 111110
Q ss_pred EEECCCCceeeeecCC-CceeEEEEecCCC-EEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccc
Q 001109 109 LWDLEARRITSTLPWE-SNITAFSVIFGTS-YMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNH 186 (1155)
Q Consensus 109 vWDl~t~~~~~~l~~~-~~Vtsva~spd~~-~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~ 186 (1155)
...+.++++.+| +.=.+++|+|-.. .|++|+--+.|++|.+.....+.-+.||..+
T Consensus 199 ----s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH------------------ 256 (440)
T KOG0302|consen 199 ----SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGH------------------ 256 (440)
T ss_pred ----cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCcccccc------------------
Confidence 234566666666 4557888998432 4778888888999987775544443333321
Q ss_pred ccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCC---e
Q 001109 187 IQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSED---K 263 (1155)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~---~ 263 (1155)
..+ |+-++|+|... +.+++|+-||+|+|||++.+ .
T Consensus 257 ------------------------------~~S-----VEDLqWSptE~-------~vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 257 ------------------------------TKS-----VEDLQWSPTED-------GVFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred ------------------------------ccc-----hhhhccCCccC-------ceEEeeecCceEEEEEecCCCccc
Confidence 222 33399999876 58999999999999999987 3
Q ss_pred EEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCcccccc
Q 001109 264 VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKS 343 (1155)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~ 343 (1155)
++.+. .|...|.-+.|+ .+-.+||+|+.||+++|||++.-...
T Consensus 295 ~~~~k-------------------------------Ah~sDVNVISWn-r~~~lLasG~DdGt~~iwDLR~~~~~----- 337 (440)
T KOG0302|consen 295 AVSTK-------------------------------AHNSDVNVISWN-RREPLLASGGDDGTLSIWDLRQFKSG----- 337 (440)
T ss_pred eeEee-------------------------------ccCCceeeEEcc-CCcceeeecCCCceEEEEEhhhccCC-----
Confidence 33321 147789999999 77779999999999999999875432
Q ss_pred CCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEcc
Q 001109 344 ENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLN 402 (1155)
Q Consensus 344 ~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~ 402 (1155)
.|+.. .+-|+.||.++.|.+ .....++++|.| +.+++|++.
T Consensus 338 ----~pVA~----fk~Hk~pItsieW~p------~e~s~iaasg~D----~QitiWDls 378 (440)
T KOG0302|consen 338 ----QPVAT----FKYHKAPITSIEWHP------HEDSVIAASGED----NQITIWDLS 378 (440)
T ss_pred ----Cccee----EEeccCCeeEEEecc------ccCceEEeccCC----CcEEEEEee
Confidence 22322 345889999999987 233445555444 578888774
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.53 E-value=9.2e-13 Score=140.85 Aligned_cols=299 Identities=12% Similarity=0.087 Sum_probs=195.5
Q ss_pred cEEEEEECCCcEEEEeCCCCC-eeeeeeeCCCcCccccCCCCCCeEEEEEecCCC----eEEEEeCCCeEEEEEeccCcc
Q 001109 552 RLYIAGYRDGSTRIWDATYPT-LSLIHVFGSELPGIRTATESESVSALEFCSVTL----NLAIGSSSGLVWLYNLIKSSN 626 (1155)
Q Consensus 552 ~lLaTgs~DgtVrlWD~~~~~-l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~----~Lasgs~dG~V~lwd~~~~~~ 626 (1155)
+.++|.+. .+|.++...... .+.+..... ..|......++|+-|.. +||+|+.-|.|+|.|+..+..
T Consensus 56 ~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D-------~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~ 127 (385)
T KOG1034|consen 56 QVFATVGG-NRVTIYECPGDGGIRLLQSYAD-------EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC 127 (385)
T ss_pred ceEEEeCC-cEEEEEEECCccceeeeeeccC-------CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh
Confidence 35666653 456677654321 122222111 14556777778876544 699999999999999987543
Q ss_pred ccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEecCCccEEEEeccCCCCCC
Q 001109 627 EETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFG-ARLAVGFECSQVAMLDISTFSVLFITDSLSNSNS 705 (1155)
Q Consensus 627 ~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg-~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~ 705 (1155)
...+.+|.+.|..|.|.|+. ++|.+||.|.+|+|||+++..|+.-+..+.||.+
T Consensus 128 -------------------------~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd 182 (385)
T KOG1034|consen 128 -------------------------SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD 182 (385)
T ss_pred -------------------------ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC
Confidence 24567999999999999985 6899999999999999999999988888899999
Q ss_pred CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeee----ecccCCCceEEEEEEeC
Q 001109 706 PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR----SIHHQESNAIYMCIIEG 781 (1155)
Q Consensus 706 ~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~----~~~~~~~~al~~~~ld~ 781 (1155)
.|.|+.|+ +||..|+|++.|.+|++|++.+.+.-... +..++++
T Consensus 183 eVLSvD~~----------------------~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t---------- 230 (385)
T KOG1034|consen 183 EVLSVDFS----------------------LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT---------- 230 (385)
T ss_pred cEEEEEEc----------------------CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCc----------
Confidence 99999999 88999999999999999998864432111 1111100
Q ss_pred CCCCCcccccccccCCCCCCCCCCCCCcCCCCCCCCCcccccccccccchhhhhccceEEEEEeccceeeecccccc---
Q 001109 782 GNFFSETSSEKQSLNTPQNSKATSEPDQTNANTGSDPVVAELETSTEATYLERIFEHLFVLLCYEDALWLYPLKSLI--- 858 (1155)
Q Consensus 782 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llc~e~~~~~ysl~~~~--- 858 (1155)
.++ +..+ +..-|+-..+..+..-++. -++- .+..+==+||++|..+.--.+.
T Consensus 231 ----~~p-------fpt~-----~~~fp~fst~diHrnyVDC------vrw~---gd~ilSkscenaI~~w~pgkl~e~~ 285 (385)
T KOG1034|consen 231 ----TRP-------FPTP-----KTHFPDFSTTDIHRNYVDC------VRWF---GDFILSKSCENAIVCWKPGKLEESI 285 (385)
T ss_pred ----cCc-------CCcc-----ccccccccccccccchHHH------HHHH---hhheeecccCceEEEEecchhhhhh
Confidence 000 0000 0001221222233222222 1221 2334447889998887652211
Q ss_pred ------ccccceeEEeeccCCccceeeeeeCCceeEEEEEeecCcEEEeecCCcccccccccccccccccccCcceeeee
Q 001109 859 ------QGHTDSIHKVNLLKPCCWTTSFKKNEKECGLVVLYQTGDIEIRVLPYLEVGGQTSLMSLLRWNYKTNMEETLCS 932 (1155)
Q Consensus 859 ------qg~~~~~~k~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~ieirslp~l~~~~~~s~~~~~~~~~~~~~~~~~~~ 932 (1155)
++...++..-+++.---|==-|.-|...-+|+|.-|.|++...+|-+-|.-..+.|. ++--..-.|.+|+
T Consensus 286 ~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~----~s~~~~tVRQ~sf 361 (385)
T KOG1034|consen 286 HNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT----HSKSGSTVRQTSF 361 (385)
T ss_pred hccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE----eccccceeeeeee
Confidence 112233333333333335555666778888899999999999999999998655332 4444444889999
Q ss_pred cCCCcE-EEEcCC
Q 001109 933 SDSGEI-VLVDFS 944 (1155)
Q Consensus 933 s~~g~~-~lvng~ 944 (1155)
|.||.+ +||+.+
T Consensus 362 S~dgs~lv~vcdd 374 (385)
T KOG1034|consen 362 SRDGSILVLVCDD 374 (385)
T ss_pred cccCcEEEEEeCC
Confidence 999999 888887
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.53 E-value=5.8e-13 Score=141.88 Aligned_cols=165 Identities=19% Similarity=0.202 Sum_probs=121.0
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCC-CeeeeeeeCCCcCccccCCCCCCeEEEEEecCC-CeEEEEeCCCeEEEEEecc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYP-TLSLIHVFGSELPGIRTATESESVSALEFCSVT-LNLAIGSSSGLVWLYNLIK 623 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~-~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg-~~Lasgs~dG~V~lwd~~~ 623 (1155)
+|+|||..|++|. ...||++|+..+ +..+.+..... + --+..+-|.+++|+|-. +++|+|+-...+-||.-..
T Consensus 165 ~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~--~--k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 165 QFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTK--G--KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred EecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhc--c--cccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 8999999998876 789999999544 32112211100 0 01334578999999965 5999999998998887655
Q ss_pred CccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEecCCcc-EEEEeccCC
Q 001109 624 SSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFE-CSQVAMLDISTFS-VLFITDSLS 701 (1155)
Q Consensus 624 ~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~-Dg~V~lWDi~~~~-~l~~~~~~~ 701 (1155)
.. +..++.+|.+.||.|+|.+||.+|-+|.. |-.|-.||++.-. .++. +.
T Consensus 240 ~~-------------------------pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~---L~ 291 (406)
T KOG2919|consen 240 RR-------------------------PLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA---LE 291 (406)
T ss_pred CC-------------------------ceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh---hh
Confidence 32 33566799999999999999999999875 6679999998643 3332 23
Q ss_pred CCCC-CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC-Cceeee
Q 001109 702 NSNS-PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT-GHILFS 763 (1155)
Q Consensus 702 ~h~~-~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t-G~~l~~ 763 (1155)
+|.. .=..+-|.. +|++++|++|+.||.|++||+.+ |+-...
T Consensus 292 rhv~~TNQRI~FDl--------------------d~~~~~LasG~tdG~V~vwdlk~~gn~~sv 335 (406)
T KOG2919|consen 292 RHVGDTNQRILFDL--------------------DPKGEILASGDTDGSVRVWDLKDLGNEVSV 335 (406)
T ss_pred hhccCccceEEEec--------------------CCCCceeeccCCCccEEEEecCCCCCcccc
Confidence 4554 445677873 48999999999999999999988 774333
No 166
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=4.3e-15 Score=147.42 Aligned_cols=67 Identities=27% Similarity=0.554 Sum_probs=64.1
Q ss_pred CCCCCCCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 001109 1079 TKPKSRTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWWQ 1154 (1155)
Q Consensus 1079 ~~~~~~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~~~~~ww~ 1154 (1155)
+.|..+++.++|++ |+|||+||.+||||+++||||||.|++|||+|++++..|++++++++|+ ||||
T Consensus 120 ~~p~id~lskvkaq-----v~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~----mw~~ 186 (217)
T KOG0859|consen 120 EHPEISKLAKVKAQ-----VTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRK----MWFQ 186 (217)
T ss_pred cCcchhHHHHHHHH-----HHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHH----HHHh
Confidence 35778999999999 8999999999999999999999999999999999999999999999999 9998
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.52 E-value=3.5e-12 Score=145.86 Aligned_cols=244 Identities=18% Similarity=0.176 Sum_probs=171.4
Q ss_pred ccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCce
Q 001109 38 HYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRI 117 (1155)
Q Consensus 38 ~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~ 117 (1155)
..||...|+|+||+.||+++|+|+.|..|.||.. ..+.++.+.|...|.+..|+|=...|+|++- +..-+|..+.+..
T Consensus 49 LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~-klEG~LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V 126 (1081)
T KOG1538|consen 49 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTS-KLEGILKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV 126 (1081)
T ss_pred cccccceEEEEEEccCCceeccCCCceeEEEecc-cccceeeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH
Confidence 3799999999999999999999999999999965 4577788889999999999998888998874 3467899876654
Q ss_pred eeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccc-
Q 001109 118 TSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAF- 196 (1155)
Q Consensus 118 ~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~- 196 (1155)
. ..+...+|.++++..||++++.|-.+|+|.+.+-..+..-.+++|-- ++ +++-+++|+|...--..+..++
T Consensus 127 ~-K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg-~N-----spiwsi~~~p~sg~G~~di~aV~ 199 (1081)
T KOG1538|consen 127 S-KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGG-SN-----SPIWSICWNPSSGEGRNDILAVA 199 (1081)
T ss_pred H-hhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCC-CC-----CCceEEEecCCCCCCccceEEEE
Confidence 3 34456789999999999999999999999887543333222333211 11 2344899988653111111111
Q ss_pred --ccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccc
Q 001109 197 --NASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQ 274 (1155)
Q Consensus 197 --~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~ 274 (1155)
+.++-+|.+...-.|.+..-.-...+ +.+.|++ .++++|+.|+.+.++- +.|-.+-+.+.
T Consensus 200 DW~qTLSFy~LsG~~Igk~r~L~FdP~C-----isYf~NG--------Ey~LiGGsdk~L~~fT-R~GvrLGTvg~---- 261 (1081)
T KOG1538|consen 200 DWGQTLSFYQLSGKQIGKDRALNFDPCC-----ISYFTNG--------EYILLGGSDKQLSLFT-RDGVRLGTVGE---- 261 (1081)
T ss_pred eccceeEEEEecceeecccccCCCCchh-----heeccCC--------cEEEEccCCCceEEEe-ecCeEEeeccc----
Confidence 11344554433322222111112223 8888875 5699999999999985 33433332110
Q ss_pred cccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 275 LKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
....|.+++.. |+|..++.|..||+|..+++...
T Consensus 262 --------------------------~D~WIWtV~~~-PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 262 --------------------------QDSWIWTVQAK-PNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred --------------------------cceeEEEEEEc-cCCceEEEEEccCeeehhhhHHh
Confidence 25689999999 99999999999999999998654
No 168
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.51 E-value=4.2e-13 Score=149.34 Aligned_cols=205 Identities=15% Similarity=0.176 Sum_probs=143.4
Q ss_pred eccCCCCCceEEEEcCCCC-EEEEEEcCCeEEEEccCCc--eEEE--EcCC--CCCEEEEEEEcCCcEEEEEecCCeEEE
Q 001109 37 LHYGIPSTASILAFDHVQS-LLAIGTQDGRIKVIGGDNI--EGLL--VSPK--QLAFKHLEFLQNQGFLVSISSGNEIQL 109 (1155)
Q Consensus 37 ~~~G~~~~vs~lafsp~g~-lLAsgs~DG~I~vw~~~~~--~~~~--~~~~--~~~V~~l~Fs~dg~~LvS~s~Dg~I~v 109 (1155)
+++.-+-.+..+.|+.... ..|+.+.|..|++|...+. ++.. .... ...|.+..|+ .++++++..+.|+|
T Consensus 29 ~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S---~y~~sgG~~~~Vki 105 (673)
T KOG4378|consen 29 VHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS---LYEISGGQSGCVKI 105 (673)
T ss_pred ccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc---eeeeccCcCceeee
Confidence 3444444588888887663 3344456778888965543 2222 1111 2234444444 89999999999999
Q ss_pred EECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccc
Q 001109 110 WDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQ 188 (1155)
Q Consensus 110 WDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~ 188 (1155)
||++.+.+...++.| +.|+++.+...+.|||+++..|.|.|....+.... .+|.++.
T Consensus 106 wdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t---t~f~~~s------------------- 163 (673)
T KOG4378|consen 106 WDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT---TTFTIDS------------------- 163 (673)
T ss_pred hhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc---cceecCC-------------------
Confidence 999977777778777 89999999999999999999999977654442211 1222221
Q ss_pred ccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEe
Q 001109 189 REKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVR 268 (1155)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~ 268 (1155)
...|.- +.|+|... -+|.+++.+|.|.|||+........
T Consensus 164 ----------------------------gqsvRl-----l~ys~skr-------~lL~~asd~G~VtlwDv~g~sp~~~- 202 (673)
T KOG4378|consen 164 ----------------------------GQSVRL-----LRYSPSKR-------FLLSIASDKGAVTLWDVQGMSPIFH- 202 (673)
T ss_pred ----------------------------CCeEEE-----eecccccc-------eeeEeeccCCeEEEEeccCCCcccc-
Confidence 112223 78888765 3788999999999999986665532
Q ss_pred cccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 269 GSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
. .+.|..+...+||++.+-..|++.+.|..|.++|+.+.
T Consensus 203 --------~--------------------~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 203 --------A--------------------SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred --------h--------------------hhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence 1 12367888899999557788999999999999999864
No 169
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2.4e-12 Score=154.33 Aligned_cols=168 Identities=18% Similarity=0.276 Sum_probs=111.1
Q ss_pred CEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecC----CCceeEEEEecC--CCEEEEEeCCCcEEEEEecCCC-
Q 001109 85 AFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPW----ESNITAFSVIFG--TSYMYIGDEYGMVYVLKYDTEE- 157 (1155)
Q Consensus 85 ~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~----~~~Vtsva~spd--~~~l~~G~~dG~V~vw~~d~~~- 157 (1155)
+-+.+-|+|=...+++++..-.|+|||.+.++++..+.. ...|+.+.+..+ ..++++|+.||.|+||+--...
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 456677888878899988788999999999999877753 268999998754 5588999999999999521111
Q ss_pred ceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccccc
Q 001109 158 GKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVN 237 (1155)
Q Consensus 158 ~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~ 237 (1155)
++ .. +.-+|++-. + +-+.+. ..+-+ +.|+.+. |
T Consensus 1146 ~~-----~e-----------LVTaw~~Ls-----~------------~~~~~r-----~~~~v-------~dWqQ~~-G- 1178 (1387)
T KOG1517|consen 1146 KK-----PE-----------LVTAWSSLS-----D------------QLPGAR-----GTGLV-------VDWQQQS-G- 1178 (1387)
T ss_pred CC-----ce-----------eEEeecccc-----c------------cCccCC-----CCCee-------eehhhhC-C-
Confidence 10 00 011222110 0 000010 01111 5676654 3
Q ss_pred ccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCe
Q 001109 238 STLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSV 317 (1155)
Q Consensus 238 ~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~ 317 (1155)
.|+++++-..|+|||+....++.- ++.+ ....|+++.-....|+.
T Consensus 1179 ------~Ll~tGd~r~IRIWDa~~E~~~~d-----------iP~~------------------s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1179 ------HLLVTGDVRSIRIWDAHKEQVVAD-----------IPYG------------------SSTLVTALSADLVHGNI 1223 (1387)
T ss_pred ------eEEecCCeeEEEEEecccceeEee-----------cccC------------------CCccceeecccccCCce
Confidence 578877789999999987776643 1111 14557777655456899
Q ss_pred EEEEEcCCcEEEEEcCC
Q 001109 318 LAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 318 lasg~~DG~I~lWd~~s 334 (1155)
||.|..||.|+++|.+.
T Consensus 1224 i~AGfaDGsvRvyD~R~ 1240 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRM 1240 (1387)
T ss_pred EEEeecCCceEEeeccc
Confidence 99999999999999864
No 170
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.47 E-value=5.5e-12 Score=153.80 Aligned_cols=187 Identities=18% Similarity=0.208 Sum_probs=126.3
Q ss_pred EccCCceEEEEcCCCCCEEEEEEEcCC-cEEEEEecCCeEEEEECCCC-------ceeeeec-CCCceeEEEEecCCCEE
Q 001109 69 IGGDNIEGLLVSPKQLAFKHLEFLQNQ-GFLVSISSGNEIQLWDLEAR-------RITSTLP-WESNITAFSVIFGTSYM 139 (1155)
Q Consensus 69 w~~~~~~~~~~~~~~~~V~~l~Fs~dg-~~LvS~s~Dg~I~vWDl~t~-------~~~~~l~-~~~~Vtsva~spd~~~l 139 (1155)
|...+..+...+.|...|..++.+++. .+++|+|.||+|++||+..- +...++. ..+++.++...+.++.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 666676666666777778788887765 89999999999999998631 1223333 34789999999999999
Q ss_pred EEEeCCCcEEEEEecCCC-ceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCccccccc
Q 001109 140 YIGDEYGMVYVLKYDTEE-GKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIR 218 (1155)
Q Consensus 140 ~~G~~dG~V~vw~~d~~~-~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (1155)
|+|+.||.|++..+|.-. .+....--++++. . ..+
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~--------------------------------------~------~~g 1149 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNL--------------------------------------K------KDG 1149 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccc--------------------------------------c------CCC
Confidence 999999999999887621 1111000011111 0 122
Q ss_pred ccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCccccccc
Q 001109 219 SKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDN 298 (1155)
Q Consensus 219 ~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1155)
.+++ .-+|...... -.|+.+...+.|..||+.....+.. ++ +
T Consensus 1150 ~vv~----m~a~~~~~~S------~~lvy~T~~~~iv~~D~r~~~~~w~-------lk---------------------~ 1191 (1431)
T KOG1240|consen 1150 VVVS----MHAFTAIVQS------HVLVYATDLSRIVSWDTRMRHDAWR-------LK---------------------N 1191 (1431)
T ss_pred ceEE----eecccccccc------eeEEEEEeccceEEecchhhhhHHh-------hh---------------------c
Confidence 2322 1122221111 2688888899999999876554322 11 1
Q ss_pred ccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCc
Q 001109 299 EQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAAST 338 (1155)
Q Consensus 299 ~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~ 338 (1155)
....+.|+++|-+ |-+.+++.|..-|.+.+||++-+...
T Consensus 1192 ~~~hG~vTSi~id-p~~~WlviGts~G~l~lWDLRF~~~i 1230 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVID-PWCNWLVIGTSRGQLVLWDLRFRVPI 1230 (1431)
T ss_pred CccccceeEEEec-CCceEEEEecCCceEEEEEeecCcee
Confidence 1136789999998 99999999999999999999876543
No 171
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.6e-11 Score=147.52 Aligned_cols=156 Identities=19% Similarity=0.252 Sum_probs=113.4
Q ss_pred CcCcEEEEEECCCcEEEEeCCCCCee-eeeeeCCCcCccccCCCCCC--eEEEEEecCCCe-EEEEeCCCeEEEEEeccC
Q 001109 549 LVERLYIAGYRDGSTRIWDATYPTLS-LIHVFGSELPGIRTATESES--VSALEFCSVTLN-LAIGSSSGLVWLYNLIKS 624 (1155)
Q Consensus 549 ~~~~lLaTgs~DgtVrlWD~~~~~l~-~l~~l~~~~~~i~~~gh~~~--V~~lafspdg~~-Lasgs~dG~V~lwd~~~~ 624 (1155)
..|++++.|..||+||+||....... +++..+ .|+.. |..+.|-+.|-- |++|+.+|.|++||++..
T Consensus 1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R---------~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR---------EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred cCCceEEEeecCCceEEeecccCCccccceeec---------ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 44789999999999999998765421 122222 45555 999999997765 999999999999999985
Q ss_pred ccccceeeeccCCceEEEecCCCCCceeEEeecCC--C-CeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEE---EEec
Q 001109 625 SNEETLNLVTETGKEVHILPGGDGPQCKALFSVLN--S-PICNLKFSNFGARLAVGFECSQVAMLDISTFSVL---FITD 698 (1155)
Q Consensus 625 ~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~--~-~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l---~~~~ 698 (1155)
..+.. .....|. | ..|++..+++...+|+|+. +.|+||++.+..+- +...
T Consensus 1290 ~~e~~-----------------------~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~ 1345 (1387)
T KOG1517|consen 1290 SKETF-----------------------LTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPG 1345 (1387)
T ss_pred ccccc-----------------------ceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcc
Confidence 32111 0111222 3 5999999999999999999 99999999874331 1111
Q ss_pred cCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCc
Q 001109 699 SLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGH 759 (1155)
Q Consensus 699 ~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~ 759 (1155)
....-.+.+.+|+|. |-.-+|++|+.|.+|.|+..+.+.
T Consensus 1346 F~~q~~gs~scL~FH----------------------P~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1346 FMGQRIGSVSCLAFH----------------------PHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cccCcCCCcceeeec----------------------chhHhhhhccCCceEEEeecCCcC
Confidence 122344678999998 556679999999999999876543
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.45 E-value=7.5e-12 Score=133.49 Aligned_cols=202 Identities=12% Similarity=0.113 Sum_probs=139.6
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEccCCc--------------eEEEEcCCCCCEEEEEEE-------cCCcEEEEEecC
Q 001109 46 SILAFDHVQSLLAIGTQDGRIKVIGGDNI--------------EGLLVSPKQLAFKHLEFL-------QNQGFLVSISSG 104 (1155)
Q Consensus 46 s~lafsp~g~lLAsgs~DG~I~vw~~~~~--------------~~~~~~~~~~~V~~l~Fs-------~dg~~LvS~s~D 104 (1155)
..+.|||||..|.+-+.|..+.+|+.+.. +..........|....|- |+..++++.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 34679999999999999999999976421 111222234456555553 555677788899
Q ss_pred CeEEEEECCCCceeeeecCC------CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeecee
Q 001109 105 NEIQLWDLEARRITSTLPWE------SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHL 178 (1155)
Q Consensus 105 g~I~vWDl~t~~~~~~l~~~------~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~ 178 (1155)
.-|++||.-+|++.+.+..- ..-.+++|+|||..|+.|. ...|+|++..-..+..-. |...
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~v--y~t~---------- 199 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPV--YTTV---------- 199 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcc--hhhh----------
Confidence 99999999999988877642 2456899999999999876 456888754211111000 0000
Q ss_pred EeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEE
Q 001109 179 LLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWD 258 (1155)
Q Consensus 179 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd 258 (1155)
..+ +.. ... -+.+++|+|.+. ..++.|+-...+-|+.
T Consensus 200 ------------------------------~~~-k~g-q~g----iisc~a~sP~~~-------~~~a~gsY~q~~giy~ 236 (406)
T KOG2919|consen 200 ------------------------------TKG-KFG-QKG----IISCFAFSPMDS-------KTLAVGSYGQRVGIYN 236 (406)
T ss_pred ------------------------------hcc-ccc-ccc----eeeeeeccCCCC-------cceeeecccceeeeEe
Confidence 000 000 111 233589999865 4788888888999988
Q ss_pred ccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEc-CCcEEEEEcCC
Q 001109 259 VSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYV-DGDILLWNLRA 334 (1155)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~-DG~I~lWd~~s 334 (1155)
-..+.++.+.++ |.+.|+-++|. +||..|.+|.. |-.|..||++.
T Consensus 237 ~~~~~pl~llgg------------------------------h~gGvThL~~~-edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 237 DDGRRPLQLLGG------------------------------HGGGVTHLQWC-EDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred cCCCCceeeecc------------------------------cCCCeeeEEec-cCcCeecccccCCCeEEEEeehh
Confidence 888888776332 57889999998 99999999985 67899999864
No 173
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.45 E-value=1.6e-12 Score=144.28 Aligned_cols=206 Identities=16% Similarity=0.181 Sum_probs=151.6
Q ss_pred cCCCCCceEEEEcCCC--CEEEEEEcCCeEEEEccCCc-----eEEEEcCCCCCEEEEEEEcCC-cEEEEEecCCeEEEE
Q 001109 39 YGIPSTASILAFDHVQ--SLLAIGTQDGRIKVIGGDNI-----EGLLVSPKQLAFKHLEFLQNQ-GFLVSISSGNEIQLW 110 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g--~lLAsgs~DG~I~vw~~~~~-----~~~~~~~~~~~V~~l~Fs~dg-~~LvS~s~Dg~I~vW 110 (1155)
.-+++.|++++|.|.- +++|+|..-|+|=+|+..+. ...+..+|.++|.++.|+|.. ..+++.|.||+|++=
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence 3577899999999976 59999999999999998421 233445788999999999964 579999999999999
Q ss_pred ECCCCce--eeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccc
Q 001109 111 DLEARRI--TSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHI 187 (1155)
Q Consensus 111 Dl~t~~~--~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~ 187 (1155)
|++.... +.++... ..+.++.|+.+...++.|+.-|...+|+.-....+.. +.++
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~--~~~l-------------------- 320 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE--NLRL-------------------- 320 (498)
T ss_pred eecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccch--hhhh--------------------
Confidence 9987743 3344322 4577888998888889999888877886544321110 0000
Q ss_pred cccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEE
Q 001109 188 QREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLV 267 (1155)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~ 267 (1155)
+...|.+ ++++|..+ ..|++|+.|++++|||++.-..-..
T Consensus 321 ----------------------------h~kKI~s-----v~~NP~~p-------~~laT~s~D~T~kIWD~R~l~~K~s 360 (498)
T KOG4328|consen 321 ----------------------------HKKKITS-----VALNPVCP-------WFLATASLDQTAKIWDLRQLRGKAS 360 (498)
T ss_pred ----------------------------hhcccce-----eecCCCCc-------hheeecccCcceeeeehhhhcCCCC
Confidence 1235566 99999877 4899999999999999864221100
Q ss_pred ecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcC
Q 001109 268 RGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLR 333 (1155)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~ 333 (1155)
| .+..-.|...|.+++|+ |+|-.|+|.+.|..|+|||..
T Consensus 361 ---------------p-----------~lst~~HrrsV~sAyFS-Ps~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 361 ---------------P-----------FLSTLPHRRSVNSAYFS-PSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ---------------c-----------ceecccccceeeeeEEc-CCCCceEeeccCCceEEeecc
Confidence 0 00011268899999999 887779999999999999974
No 174
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=2.4e-10 Score=136.71 Aligned_cols=206 Identities=16% Similarity=0.149 Sum_probs=139.4
Q ss_pred eccCCCCCceEEEEcCCCC---EEEEEEcCCeEEEEccCCceEEEEcCCCCCE---------------------------
Q 001109 37 LHYGIPSTASILAFDHVQS---LLAIGTQDGRIKVIGGDNIEGLLVSPKQLAF--------------------------- 86 (1155)
Q Consensus 37 ~~~G~~~~vs~lafsp~g~---lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V--------------------------- 86 (1155)
...+|...++.+.+.|... ++.+.+.||.|++|+....+.+.+.....++
T Consensus 52 ~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~ 131 (792)
T KOG1963|consen 52 SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILT 131 (792)
T ss_pred hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeee
Confidence 4578999999999998764 6779999999999986554433221111111
Q ss_pred --------------------------------EEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeec----CC-CceeE
Q 001109 87 --------------------------------KHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLP----WE-SNITA 129 (1155)
Q Consensus 87 --------------------------------~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~----~~-~~Vts 129 (1155)
+.|.+++.| .+.....+..+.+|+..++....... .| -.+++
T Consensus 132 ~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g-e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~ 210 (792)
T KOG1963|consen 132 TFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG-EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITC 210 (792)
T ss_pred ecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc-eEEEEEEeeeEEEEEecccceeeccchhhhhhccccee
Confidence 122233332 23333345567788887754111110 12 34899
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEecCC--CceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCC
Q 001109 130 FSVIFGTSYMYIGDEYGMVYVLKYDTE--EGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPP 207 (1155)
Q Consensus 130 va~spd~~~l~~G~~dG~V~vw~~d~~--~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 207 (1155)
++++|.++++++|..||.|.||. |.. .... .+..+.||
T Consensus 211 ~~~spn~~~~Aa~d~dGrI~vw~-d~~~~~~~~---------------t~t~lHWH------------------------ 250 (792)
T KOG1963|consen 211 VALSPNERYLAAGDSDGRILVWR-DFGSSDDSE---------------TCTLLHWH------------------------ 250 (792)
T ss_pred EEeccccceEEEeccCCcEEEEe-ccccccccc---------------cceEEEec------------------------
Confidence 99999999999999999999995 221 1010 11123333
Q ss_pred CCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCC
Q 001109 208 DESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNA 287 (1155)
Q Consensus 208 ~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1155)
+.+|.+ ++|++++ ..|++|+..|.+.+|.+.+++.... .+
T Consensus 251 ---------~~~V~~-----L~fS~~G--------~~LlSGG~E~VLv~Wq~~T~~kqfL--------PR---------- 290 (792)
T KOG1963|consen 251 ---------HDEVNS-----LSFSSDG--------AYLLSGGREGVLVLWQLETGKKQFL--------PR---------- 290 (792)
T ss_pred ---------ccccce-----eEEecCC--------ceEeecccceEEEEEeecCCCcccc--------cc----------
Confidence 345555 9999985 4699999999999999999884332 10
Q ss_pred CCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCC
Q 001109 288 GHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAAS 337 (1155)
Q Consensus 288 ~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~ 337 (1155)
-.+.|..+.|+ ||+...+....|..|.+-...+...
T Consensus 291 -------------Lgs~I~~i~vS-~ds~~~sl~~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 291 -------------LGSPILHIVVS-PDSDLYSLVLEDNQIHLIKASDLEI 326 (792)
T ss_pred -------------cCCeeEEEEEc-CCCCeEEEEecCceEEEEeccchhh
Confidence 15679999999 9999999999999999998876543
No 175
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=6.5e-13 Score=162.02 Aligned_cols=223 Identities=23% Similarity=0.278 Sum_probs=159.7
Q ss_pred CCceEEEEcCCCCE----EEEEEcCCeEEEEccCCc------eEEE-EcCCCCCEEEEEEEcCCc-EEEEEecCCeEEEE
Q 001109 43 STASILAFDHVQSL----LAIGTQDGRIKVIGGDNI------EGLL-VSPKQLAFKHLEFLQNQG-FLVSISSGNEIQLW 110 (1155)
Q Consensus 43 ~~vs~lafsp~g~l----LAsgs~DG~I~vw~~~~~------~~~~-~~~~~~~V~~l~Fs~dg~-~LvS~s~Dg~I~vW 110 (1155)
..-+.|+|.+.|.. ||.|..||.|-+|+.... +.+. ...|.++|+.|.|++.++ .|++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45678999988754 999999999999987542 1222 235789999999999987 88999999999999
Q ss_pred ECCCCceeeeec---CCCceeEEEEecC-CCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccc
Q 001109 111 DLEARRITSTLP---WESNITAFSVIFG-TSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNH 186 (1155)
Q Consensus 111 Dl~t~~~~~~l~---~~~~Vtsva~spd-~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~ 186 (1155)
|+..-+.-.++. ..+.|.++++... ...|++|+.+|.+.||++.... .++ -++.++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii-----------------~ls~~~-- 204 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-PII-----------------KLSDTP-- 204 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC-ccc-----------------ccccCC--
Confidence 998755444442 3478999999865 4478889999999888554421 111 000000
Q ss_pred ccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcC---CeEEEEEccCCe
Q 001109 187 IQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYAN---GLIILWDVSEDK 263 (1155)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~d---G~I~lWd~~~~~ 263 (1155)
... .+..+.|||+.. ++|+++++| -.|.+||++--.
T Consensus 205 -----------------------------~~~-----~~S~l~WhP~~a-------Tql~~As~dd~~PviqlWDlR~as 243 (1049)
T KOG0307|consen 205 -----------------------------GRM-----HCSVLAWHPDHA-------TQLLVASGDDSAPVIQLWDLRFAS 243 (1049)
T ss_pred -----------------------------Ccc-----ceeeeeeCCCCc-------eeeeeecCCCCCceeEeecccccC
Confidence 011 233499999865 688888886 589999986432
Q ss_pred -EEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccc
Q 001109 264 -VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWK 342 (1155)
Q Consensus 264 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~ 342 (1155)
.+++ .++|...|.++.|...|..+|+|.+.|+.|.+||..+++....
T Consensus 244 sP~k~------------------------------~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~-- 291 (1049)
T KOG0307|consen 244 SPLKI------------------------------LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE-- 291 (1049)
T ss_pred Cchhh------------------------------hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee--
Confidence 2222 1136889999999855669999999999999999999764321
Q ss_pred cCCCCCCcccccccCCCCCccEEEEEeccc
Q 001109 343 SENSSTDFGKLQLSSGNRRLPVITLHWSAE 372 (1155)
Q Consensus 343 ~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~ 372 (1155)
......+++.++|++.
T Consensus 292 --------------~p~~~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 292 --------------LPAQGNWCFDVQWCPR 307 (1049)
T ss_pred --------------cCCCCcceeeeeecCC
Confidence 1124567889999974
No 176
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.4e-11 Score=133.66 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=100.7
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCce--------EEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEE
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIE--------GLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLW 110 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~--------~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vW 110 (1155)
.||.+-|++|-||.++++||+|+.|-.++||..+..- .+...+|+..|-+|+|.-...+|+++..+++|.+-
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 5899999999999999999999999999999865321 22334567899999999988999999999999999
Q ss_pred ECCCCceeeeecCC---CceeEEEEecCCCEEEEEeCCCcEEEEEe
Q 001109 111 DLEARRITSTLPWE---SNITAFSVIFGTSYMYIGDEYGMVYVLKY 153 (1155)
Q Consensus 111 Dl~t~~~~~~l~~~---~~Vtsva~spd~~~l~~G~~dG~V~vw~~ 153 (1155)
|+++.+.+..+... +.|..+..+|-++.+++.+.+|.|.+|+.
T Consensus 133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~ 178 (609)
T KOG4227|consen 133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDN 178 (609)
T ss_pred ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEec
Confidence 99999998887654 58999999999999999999999988843
No 177
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1.6e-12 Score=143.77 Aligned_cols=175 Identities=17% Similarity=0.167 Sum_probs=125.5
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
+|.++|..++||+.||++|+|+...-. ..++ ...|...|.+|+|+|||+.||+-+.| ..+||+..++.
T Consensus 151 af~~~gs~latgg~dg~lRv~~~Ps~~----t~l~-------e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 151 AFNGDGSKLATGGTDGTLRVWEWPSML----TILE-------EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred EEcCCCCEeeeccccceEEEEecCcch----hhhh-------hHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence 899999999999999999999975433 1121 12567799999999999999999999 89999999873
Q ss_pred cc------------cceeeeccC-CceEEEecC---CCCCc-eeE------------EeecCCCCeEEEEEcCCCCEEEE
Q 001109 626 NE------------ETLNLVTET-GKEVHILPG---GDGPQ-CKA------------LFSVLNSPICNLKFSNFGARLAV 676 (1155)
Q Consensus 626 ~~------------~~~~~v~~~-~~~~~~~~~---~~g~~-~~~------------~l~~h~~~VtslafSpdg~~LAs 676 (1155)
.. ..+.|...+ ...+.+... +++.. |.. ....-...|++++.|+||+++|.
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence 11 112222111 111111110 11100 100 01111236999999999999999
Q ss_pred EeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECC
Q 001109 677 GFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDST 756 (1155)
Q Consensus 677 Gs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~ 756 (1155)
|+.||.|.|++..+.++++-.. ..|..-|+.|.|+ ||.+.+++.+.|.++.|.-+.
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk--~aH~~~VT~ltF~----------------------Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK--EAHLGFVTGLTFS----------------------PDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh--hhheeeeeeEEEc----------------------CCcCcccccccCCceeEEEEe
Confidence 9999999999999877766432 4599999999999 888999999999888887653
No 178
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.39 E-value=8.6e-13 Score=154.66 Aligned_cols=240 Identities=13% Similarity=0.128 Sum_probs=166.1
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCce
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRI 117 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~ 117 (1155)
.||.+.|+|++||..|+++.+|+.|.-||||...+..++... +|.+.|+.++.+.+.-+++++|.|..|+||-+.++.+
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p 266 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP 266 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence 599999999999999999999999999999999988887765 5688999999999988899999999999999999999
Q ss_pred eeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccc
Q 001109 118 TSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAF 196 (1155)
Q Consensus 118 ~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~ 196 (1155)
+..+++| +.||+++|+|-. +.+.||++++|+++.+.....-+|.......+ +.++.|+........+.-.-
T Consensus 267 vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~----~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDL----VDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccc----eeeeeccccccccccccCCc
Confidence 9999988 899999999965 66789999999988554333333333322211 11333332221111110000
Q ss_pred ccceeeecCCCCCCCccccc-ccccccceeeEEEEee---cccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccc
Q 001109 197 NASLLFYCMPPDESGFIDFI-IRSKLRFFVEIRLLQF---QKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKD 272 (1155)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~-~~~v~~~~v~~v~~~p---~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~ 272 (1155)
.+...+... ...-+. +.|.. +.. ...+++-.+-.+.+|++.+|.++...+.
T Consensus 339 -----------ea~n~e~~~l~~~~~~-----lif~t~ssd~~-------~~~~~ar~~~~~~vwnl~~g~l~H~l~g-- 393 (1113)
T KOG0644|consen 339 -----------EARNHEFEQLAWRSNL-----LIFVTRSSDLS-------SIVVTARNDHRLCVWNLYTGQLLHNLMG-- 393 (1113)
T ss_pred -----------ccccchhhHhhhhccc-----eEEEecccccc-------ccceeeeeeeEeeeeecccchhhhhhcc--
Confidence 000000000 000011 11211 111 3456666778888999999987765321
Q ss_pred cccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCcc
Q 001109 273 LQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTK 339 (1155)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~ 339 (1155)
|...+..+.+++-+...-.+++.||...|||+..+...+
T Consensus 394 ----------------------------hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 394 ----------------------------HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred ----------------------------cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcce
Confidence 466788889994456666789999999999998876543
No 179
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.39 E-value=5.7e-13 Score=122.47 Aligned_cols=62 Identities=37% Similarity=0.682 Sum_probs=58.9
Q ss_pred CCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 001109 1084 RTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWWQ 1154 (1155)
Q Consensus 1084 ~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~~~~~ww~ 1154 (1155)
+++.+|+.+ |++++++|.+|+++++||||||+.|++||++|++.|+.|++.|++|+|+ |||+
T Consensus 3 dkl~~i~~~-----v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~----~~~~ 64 (89)
T PF00957_consen 3 DKLEQIQEQ-----VEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRK----MWWR 64 (89)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
T ss_pred hHHHHHHHH-----HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHH
Confidence 567788888 8899999999999999999999999999999999999999999999999 8886
No 180
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.38 E-value=5.9e-12 Score=140.41 Aligned_cols=219 Identities=13% Similarity=0.181 Sum_probs=165.3
Q ss_pred CceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeec
Q 001109 44 TASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLP 122 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~ 122 (1155)
...|++......++.+|+..|.|+|||.....+...+ .|+..|+++.+.-...+|++++..|.|.|-.+.++....+|.
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~ 160 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT 160 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee
Confidence 3456666666689999999999999998854443322 468899999999988999999999999999999998887777
Q ss_pred CC--CceeEEEEecCCCE-EEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccc
Q 001109 123 WE--SNITAFSVIFGTSY-MYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNAS 199 (1155)
Q Consensus 123 ~~--~~Vtsva~spd~~~-l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~ 199 (1155)
.. ..|+-+.++|..++ |.+++++|.|.+|+..... ||. +...
T Consensus 161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s------p~~-~~~~---------------------------- 205 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS------PIF-HASE---------------------------- 205 (673)
T ss_pred cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC------ccc-chhh----------------------------
Confidence 55 44668999998775 5678999999999665432 221 1100
Q ss_pred eeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccccccccc
Q 001109 200 LLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEI 279 (1155)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~ 279 (1155)
. |..+..+ |+|+|... .+|++.+.|..|.+||....+......+
T Consensus 206 ---------~------HsAP~~g-----icfspsne-------~l~vsVG~Dkki~~yD~~s~~s~~~l~y--------- 249 (673)
T KOG4378|consen 206 ---------A------HSAPCRG-----ICFSPSNE-------ALLVSVGYDKKINIYDIRSQASTDRLTY--------- 249 (673)
T ss_pred ---------h------ccCCcCc-----ceecCCcc-------ceEEEecccceEEEeecccccccceeee---------
Confidence 0 2334455 99999876 5899999999999999987665543221
Q ss_pred ccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCC
Q 001109 280 VDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGN 359 (1155)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~ 359 (1155)
..+.++++|. ++|.+|+.|...|.|..||++....+.. - ...
T Consensus 250 ----------------------~~Plstvaf~-~~G~~L~aG~s~G~~i~YD~R~~k~Pv~-----------v----~sa 291 (673)
T KOG4378|consen 250 ----------------------SHPLSTVAFS-ECGTYLCAGNSKGELIAYDMRSTKAPVA-----------V----RSA 291 (673)
T ss_pred ----------------------cCCcceeeec-CCceEEEeecCCceEEEEecccCCCCce-----------E----eee
Confidence 4568899999 9999999999999999999998654321 1 123
Q ss_pred CCccEEEEEecc
Q 001109 360 RRLPVITLHWSA 371 (1155)
Q Consensus 360 ~~~pI~~l~w~~ 371 (1155)
|...|..++|.+
T Consensus 292 h~~sVt~vafq~ 303 (673)
T KOG4378|consen 292 HDASVTRVAFQP 303 (673)
T ss_pred cccceeEEEeee
Confidence 555688888865
No 181
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.38 E-value=3e-12 Score=139.74 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=124.9
Q ss_pred cCCCCCCeEEEEEecCC-CeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEE
Q 001109 588 TATESESVSALEFCSVT-LNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLK 666 (1155)
Q Consensus 588 ~~gh~~~V~~lafspdg-~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vtsla 666 (1155)
..||+++|..++|+|-+ ..+|+|++|.+|.||++-.+....+ -..+++.|.+|+..|--|+
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------------ltepvv~L~gH~rrVg~V~ 138 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------------LTEPVVELYGHQRRVGLVQ 138 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------------cccceEEEeecceeEEEEe
Confidence 34999999999999965 5689999999999999976532111 1235678899999999999
Q ss_pred EcCCC-CEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEe
Q 001109 667 FSNFG-ARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMT 745 (1155)
Q Consensus 667 fSpdg-~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s 745 (1155)
|.|-- ..|++++.|.+|.+||+.++..+.+. .|.+-|+|+.|+ .||..|++++
T Consensus 139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l----~hpd~i~S~sfn----------------------~dGs~l~Ttc 192 (472)
T KOG0303|consen 139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALITL----DHPDMVYSMSFN----------------------RDGSLLCTTC 192 (472)
T ss_pred ecccchhhHhhccCCceEEEEeccCCceeeec----CCCCeEEEEEec----------------------cCCceeeeec
Confidence 99976 47999999999999999999888763 299999999998 7899999999
Q ss_pred CCceEEEEECCCCceeeeeecccC--CCceEEEEEE
Q 001109 746 KDAHIVVCDSTTGHILFSRSIHHQ--ESNAIYMCII 779 (1155)
Q Consensus 746 ~Dg~I~vwd~~tG~~l~~~~~~~~--~~~al~~~~l 779 (1155)
+|..|+|||..+|+++.....|-- +.+++++.-.
T Consensus 193 kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 193 KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG 228 (472)
T ss_pred ccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence 999999999999999999955553 8888887543
No 182
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.37 E-value=1.1e-10 Score=123.08 Aligned_cols=130 Identities=18% Similarity=0.200 Sum_probs=89.7
Q ss_pred ccCCcCc-EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCC-CeEEEEeCCCeEEEEEecc
Q 001109 546 EDYLVER-LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVT-LNLAIGSSSGLVWLYNLIK 623 (1155)
Q Consensus 546 ~~s~~~~-lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg-~~Lasgs~dG~V~lwd~~~ 623 (1155)
.|.|+.+ +|+|++.||-|||||.+.... ++..+ .+|..+|++|.|.|.- +++.+|+.|..|.+|-...
T Consensus 221 DfNpnkq~~lvt~gDdgyvriWD~R~tk~-pv~el---------~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 221 DFNPNKQHILVTCGDDGYVRIWDTRKTKF-PVQEL---------PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred cCCCCceEEEEEcCCCccEEEEeccCCCc-ccccc---------CCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 5556544 789999999999999877652 33333 4888999999999975 5678999999999998765
Q ss_pred Cccccceeeec-cCC-------ceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEecC
Q 001109 624 SSNEETLNLVT-ETG-------KEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGA-RLAVGFECSQVAMLDIS 689 (1155)
Q Consensus 624 ~~~~~~~~~v~-~~~-------~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~-~LAsGs~Dg~V~lWDi~ 689 (1155)
-.....+.+-. ..+ ..+..++.+ .+.++..|.+.|.+++||.-.. .+|+=+.||.|.|=.+.
T Consensus 291 vSSE~qi~~~~dese~e~~dseer~kpL~dg----~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 291 VSSEQQIEFEDDESESEDEDSEERVKPLQDG----QLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccccccCcchhhHHhccccccc----ccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 43222222211 000 011222221 2357788999999999998666 58999999998776553
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=8.1e-12 Score=142.22 Aligned_cols=256 Identities=15% Similarity=0.144 Sum_probs=167.2
Q ss_pred CCcceeeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccC--------CceEEEEc-CCCCCEEEEEEEcCCcEEEEE
Q 001109 31 FDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGD--------NIEGLLVS-PKQLAFKHLEFLQNQGFLVSI 101 (1155)
Q Consensus 31 ~~~~~~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~--------~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~ 101 (1155)
|.+.... .-|...+.+++|.|..--|++|+.||+|++|+.. ..+.++++ .|.+||.++...+++..++++
T Consensus 284 w~ik~tl-~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 284 WNIKFTL-RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred cceeeee-ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence 5555543 3567789999999999999999999999999872 12334443 579999999999999999999
Q ss_pred ecCCeEEEEECCC------C----ceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCC
Q 001109 102 SSGNEIQLWDLEA------R----RITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKD 170 (1155)
Q Consensus 102 s~Dg~I~vWDl~t------~----~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~ 170 (1155)
+-||+|+.|++-. . .+..++.+| +.|+.+++++....|++.+.||+|+.|.+....-.+ |..+..
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~----f~~~~e 438 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCT----FGEPKE 438 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccc----cCCccc
Confidence 9999999996531 1 233456666 789999999999999999999999999765543110 211111
Q ss_pred ceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccc------cccccccceeeEEEEeecccccccccccE
Q 001109 171 VIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDF------IIRSKLRFFVEIRLLQFQKHVNSTLGFSQ 244 (1155)
Q Consensus 171 ~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~v~~v~~~p~~~~~~~~~~~~ 244 (1155)
. .-++++.+......... .++....|.+-....+.... ...+.....+..+..+|.. .+
T Consensus 439 ~---g~Plsvd~~ss~~a~~~----~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~--------~~ 503 (577)
T KOG0642|consen 439 H---GYPLSVDRTSSRPAHSL----ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA--------DI 503 (577)
T ss_pred c---CCcceEeeccchhHhhh----hhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC--------Ce
Confidence 0 00111111111100000 00000000000000000000 0000000122337888875 46
Q ss_pred EEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcC
Q 001109 245 LLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVD 324 (1155)
Q Consensus 245 llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~D 324 (1155)
.+++.+|+.|+++|..+++++.. + ..|...|+++++. |+|-+|++|+.|
T Consensus 504 ~~~~hed~~Ir~~dn~~~~~l~s-------~-----------------------~a~~~svtslai~-~ng~~l~s~s~d 552 (577)
T KOG0642|consen 504 TFTAHEDRSIRFFDNKTGKILHS-------M-----------------------VAHKDSVTSLAID-PNGPYLMSGSHD 552 (577)
T ss_pred eEecccCCceecccccccccchh-------e-----------------------eeccceecceeec-CCCceEEeecCC
Confidence 99999999999999999988753 0 1146789999999 999999999999
Q ss_pred CcEEEEEcCCCCC
Q 001109 325 GDILLWNLRAAAS 337 (1155)
Q Consensus 325 G~I~lWd~~s~~~ 337 (1155)
|.+++|.+....+
T Consensus 553 ~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 553 GSVRLWKLDVKTC 565 (577)
T ss_pred ceeehhhccchhe
Confidence 9999999876543
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.35 E-value=6.5e-11 Score=141.66 Aligned_cols=104 Identities=19% Similarity=0.309 Sum_probs=75.3
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCC-CeEEEEeCCCeEEEEEeccCcccccee
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVT-LNLAIGSSSGLVWLYNLIKSSNEETLN 631 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg-~~Lasgs~dG~V~lwd~~~~~~~~~~~ 631 (1155)
+++|++ |.+||||.-.... .+++.+. .+...|++++|||.- ..+|++..||.+.+||+......
T Consensus 413 ~fls~g-DW~vriWs~~~~~-~Pl~~~~---------~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~---- 477 (555)
T KOG1587|consen 413 NFLSVG-DWTVRIWSEDVIA-SPLLSLD---------SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE---- 477 (555)
T ss_pred eeeeec-cceeEeccccCCC-Ccchhhh---------hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC----
Confidence 344555 9999999865322 2344333 344569999999975 46788888999999999864321
Q ss_pred eeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 001109 632 LVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDIST 690 (1155)
Q Consensus 632 ~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~ 690 (1155)
+ +....-+....+.+.|+++|+.||+|+..|++.+|++..
T Consensus 478 -----------------P--v~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 478 -----------------P--VLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred -----------------C--cccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 1 122223355677889999999999999999999999964
No 185
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.3e-11 Score=136.81 Aligned_cols=199 Identities=17% Similarity=0.138 Sum_probs=143.1
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEE-cCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC
Q 001109 46 SILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLV-SPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE 124 (1155)
Q Consensus 46 s~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~-~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~ 124 (1155)
.++||+++|..||+|..||++|||+.++.+.++. ..|...|.+|.|+|||.+|++.+.| ..+||+++++..+......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 7899999999999999999999999776655443 3467889999999999999999999 9999999999777766522
Q ss_pred ---CceeEEEEecCC-----CEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccc
Q 001109 125 ---SNITAFSVIFGT-----SYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAF 196 (1155)
Q Consensus 125 ---~~Vtsva~spd~-----~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~ 196 (1155)
.....|.|+.|+ .+++.....+.|..|+...-.+.-. .+..+
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~-----l~~~~------------------------- 276 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNF-----LRLRK------------------------- 276 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccc-----cchhh-------------------------
Confidence 456677787666 2223333445555543322111000 00000
Q ss_pred ccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccc
Q 001109 197 NASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLK 276 (1155)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~ 276 (1155)
...... .+.+++.+++ | +.++.|+.||.|.|+++.+-+.++.. +
T Consensus 277 ----------------~~~~~~-----siSsl~VS~d--G------kf~AlGT~dGsVai~~~~~lq~~~~v-------k 320 (398)
T KOG0771|consen 277 ----------------KIKRFK-----SISSLAVSDD--G------KFLALGTMDGSVAIYDAKSLQRLQYV-------K 320 (398)
T ss_pred ----------------hhhccC-----cceeEEEcCC--C------cEEEEeccCCcEEEEEeceeeeeEee-------h
Confidence 000111 3445888887 5 67999999999999999887776641 1
Q ss_pred cccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 277 TEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
+.|..-|+.+.|+ ||.+.+++-+.|..+.+-.+.-
T Consensus 321 ----------------------~aH~~~VT~ltF~-Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 321 ----------------------EAHLGFVTGLTFS-PDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ----------------------hhheeeeeeEEEc-CCcCcccccccCCceeEEEEee
Confidence 1257789999999 9999999999999888877654
No 186
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.34 E-value=2.1e-10 Score=126.28 Aligned_cols=171 Identities=14% Similarity=0.188 Sum_probs=122.4
Q ss_pred CCCEEEEEEEcCCc-EEEEEecCCeEEEEECCCCce---------eeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEE
Q 001109 83 QLAFKHLEFLQNQG-FLVSISSGNEIQLWDLEARRI---------TSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVL 151 (1155)
Q Consensus 83 ~~~V~~l~Fs~dg~-~LvS~s~Dg~I~vWDl~t~~~---------~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw 151 (1155)
..+|..+.|.++.. +|+|++.|..|++|-+..... +..|..| ..|+++.|+|+|+.|++|+++|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 56899999999876 999999999999999875432 2344444 789999999999999999999999999
Q ss_pred EecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccccc--ceeeecCCCCCCCcccccccccccceeeEEE
Q 001109 152 KYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNA--SLLFYCMPPDESGFIDFIIRSKLRFFVEIRL 229 (1155)
Q Consensus 152 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~ 229 (1155)
.-.... ++ +.+. . ++.+. +..--. ...+...+.. ++
T Consensus 93 k~~~~~------~~--~~d~-e--------------------~~~~ke~w~v~k~--------lr~h~~diyd-----L~ 130 (434)
T KOG1009|consen 93 KQGDVR------IF--DADT-E--------------------ADLNKEKWVVKKV--------LRGHRDDIYD-----LA 130 (434)
T ss_pred EecCcC------Cc--cccc-h--------------------hhhCccceEEEEE--------ecccccchhh-----hh
Confidence 754210 00 0000 0 00000 000000 0002345566 99
Q ss_pred EeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEE
Q 001109 230 LQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLC 309 (1155)
Q Consensus 230 ~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~ 309 (1155)
|+|++ +.+++++-|+.+++||+..|.++.... +|...|..++
T Consensus 131 Ws~d~--------~~l~s~s~dns~~l~Dv~~G~l~~~~~------------------------------dh~~yvqgva 172 (434)
T KOG1009|consen 131 WSPDS--------NFLVSGSVDNSVRLWDVHAGQLLAILD------------------------------DHEHYVQGVA 172 (434)
T ss_pred ccCCC--------ceeeeeeccceEEEEEeccceeEeecc------------------------------ccccccceee
Confidence 99985 469999999999999999999987522 1577899999
Q ss_pred EEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 310 WASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 310 ~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
|. |-++++++=+.|...+...+..
T Consensus 173 wD-pl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 173 WD-PLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred cc-hhhhhhhhhccCcccceeeeee
Confidence 99 9999999999998666666543
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=5.7e-11 Score=128.09 Aligned_cols=194 Identities=14% Similarity=0.196 Sum_probs=137.5
Q ss_pred CEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcC--CcEEEEEecCCeEEEEECCCCceeeeecCC----Cce
Q 001109 55 SLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQN--QGFLVSISSGNEIQLWDLEARRITSTLPWE----SNI 127 (1155)
Q Consensus 55 ~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~d--g~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~----~~V 127 (1155)
..+|++..+|.|++|+..++..+..+ .+...+..+.|... ...+.+++.||+|++||+++.+....+.+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 67999999999999998876655443 24567778888773 346889999999999999988766665543 366
Q ss_pred eEEEEecCCCEEEEEeC----CCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeee
Q 001109 128 TAFSVIFGTSYMYIGDE----YGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFY 203 (1155)
Q Consensus 128 tsva~spd~~~l~~G~~----dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 203 (1155)
.|++....++.+++|++ +-.|.+| |.+..+...+ .+
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lw--DvR~~qq~l~-------------------------~~------------- 160 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLW--DVRSEQQLLR-------------------------QL------------- 160 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEE--Eeccccchhh-------------------------hh-------------
Confidence 77777778889999875 3345555 4433221000 00
Q ss_pred cCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCC
Q 001109 204 CMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDP 283 (1155)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (1155)
.-.|+..|++ +.|+|.++ ++|++|+.||.|.|+|+.....-- .+...+
T Consensus 161 ---------~eSH~DDVT~-----lrFHP~~p-------nlLlSGSvDGLvnlfD~~~d~EeD-------aL~~vi---- 208 (376)
T KOG1188|consen 161 ---------NESHNDDVTQ-----LRFHPSDP-------NLLLSGSVDGLVNLFDTKKDNEED-------ALLHVI---- 208 (376)
T ss_pred ---------hhhccCccee-----EEecCCCC-------CeEEeecccceEEeeecCCCcchh-------hHHHhh----
Confidence 0113455555 99999987 799999999999999987653211 111101
Q ss_pred CCCCCCCCcccccccccccCCccEEEEEecCC-CeEEEEEcCCcEEEEEcCCCCC
Q 001109 284 SKNAGHNLSETVSDNEQVEKEISSLCWASNDG-SVLAVGYVDGDILLWNLRAAAS 337 (1155)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG-~~lasg~~DG~I~lWd~~s~~~ 337 (1155)
.+...|.++.|. .++ ++|.+-+..++..+|++..+..
T Consensus 209 ----------------N~~sSI~~igw~-~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 209 ----------------NHGSSIHLIGWL-SKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred ----------------cccceeeeeeee-cCCcceEEEEEccCceeEEEccCCCh
Confidence 136679999999 565 5699999999999999998764
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.33 E-value=6.8e-10 Score=128.49 Aligned_cols=214 Identities=11% Similarity=0.086 Sum_probs=135.7
Q ss_pred CCCCceEEEEcCCCCEEEEEE-cCCeEEEEccC-CceE--EEEcCCCCCEEEEEEEcCCcEEEEEec-CCeEEEEECCC-
Q 001109 41 IPSTASILAFDHVQSLLAIGT-QDGRIKVIGGD-NIEG--LLVSPKQLAFKHLEFLQNQGFLVSISS-GNEIQLWDLEA- 114 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs-~DG~I~vw~~~-~~~~--~~~~~~~~~V~~l~Fs~dg~~LvS~s~-Dg~I~vWDl~t- 114 (1155)
+.+.+..++|+|++++|++++ .++.|.+|+.+ .... ............+.|+|++++|++++. ++.|.+||+++
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 346788899999999887765 47889999875 2222 222223345679999999999998874 78999999974
Q ss_pred Cc---eeeeecCCCceeEEEEecCCCEEEEEe-CCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccc
Q 001109 115 RR---ITSTLPWESNITAFSVIFGTSYMYIGD-EYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQRE 190 (1155)
Q Consensus 115 ~~---~~~~l~~~~~Vtsva~spd~~~l~~G~-~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~ 190 (1155)
+. .+..+.......+++++|+++++++.+ .++.|++|+++. .+.+... ....
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~-~g~l~~~----~~~~------------------- 168 (330)
T PRK11028 113 GIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD-DGHLVAQ----EPAE------------------- 168 (330)
T ss_pred CCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC-CCccccc----CCCc-------------------
Confidence 32 233344445577889999999997665 458899998765 2222100 0000
Q ss_pred ccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEc-CCeEEEEEccC--CeEEEE
Q 001109 191 KGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYA-NGLIILWDVSE--DKVVLV 267 (1155)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~-dG~I~lWd~~~--~~~~~~ 267 (1155)
..++. .....+ +.|+|++ ++++++.+ ++.|.+||+.. ++....
T Consensus 169 ------------~~~~~---------g~~p~~-----~~~~pdg--------~~lyv~~~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 169 ------------VTTVE---------GAGPRH-----MVFHPNQ--------QYAYCVNELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred ------------eecCC---------CCCCce-----EEECCCC--------CEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence 00000 011223 8899974 56877776 89999999973 333211
Q ss_pred ecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEc-CCcEEEEEcCCC
Q 001109 268 RGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYV-DGDILLWNLRAA 335 (1155)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~-DG~I~lWd~~s~ 335 (1155)
.. +...+.... +......+.|+ |||++|+++.. ++.|.+|++...
T Consensus 215 ~~---------~~~~p~~~~-------------~~~~~~~i~~~-pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 215 QT---------LDMMPADFS-------------DTRWAADIHIT-PDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred EE---------EecCCCcCC-------------CCccceeEEEC-CCCCEEEEecCCCCeEEEEEEeCC
Confidence 00 000000000 12233468898 99999999854 789999999653
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.30 E-value=4.4e-10 Score=134.62 Aligned_cols=155 Identities=8% Similarity=-0.035 Sum_probs=101.3
Q ss_pred CcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccce
Q 001109 551 ERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETL 630 (1155)
Q Consensus 551 ~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~ 630 (1155)
...++.|+.+|.|.-=+..+.........+.+ . ....|.++|+++.++|-+..+...+.|.+|+||.-.....
T Consensus 360 p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~-~--~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~---- 432 (555)
T KOG1587|consen 360 PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH-S--TFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIAS---- 432 (555)
T ss_pred CceEEEEcCCcEEEEEeccCCccccccccccc-c--cccccCcceEeeecCCCccceeeeeccceeEeccccCCCC----
Confidence 45788899999886633222221110001110 0 1225778999999999988766555599999998773221
Q ss_pred eeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEecCCccE--EEEeccCCCCCCCe
Q 001109 631 NLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFG-ARLAVGFECSQVAMLDISTFSV--LFITDSLSNSNSPV 707 (1155)
Q Consensus 631 ~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg-~~LAsGs~Dg~V~lWDi~~~~~--l~~~~~~~~h~~~V 707 (1155)
++..+..+...|+++||||-. ..+|++..||+|-+||+..... +.+... +....
T Consensus 433 --------------------Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~---~~~~l 489 (555)
T KOG1587|consen 433 --------------------PLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV---CSPAL 489 (555)
T ss_pred --------------------cchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc---ccccc
Confidence 112345567779999999976 4799999999999999865221 111111 22223
Q ss_pred eEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC
Q 001109 708 LYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 708 ~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t 757 (1155)
..+.|+ +.|++|+.|...|++.++++..
T Consensus 490 ~~~~~s----------------------~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 490 TRVRWS----------------------PNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ceeecC----------------------CCCcEEEEecCCCcEEEEEcCc
Confidence 333333 6799999999999999999864
No 190
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.29 E-value=3.9e-10 Score=138.06 Aligned_cols=284 Identities=14% Similarity=0.141 Sum_probs=161.5
Q ss_pred ccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCc
Q 001109 301 VEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRG 380 (1155)
Q Consensus 301 ~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~ 380 (1155)
|...|..++-+++++.+++||+.||+|++||......... ..-..+.++ ..+.++..+..+. .+.
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~-------s~rS~ltys--~~~sr~~~vt~~~------~~~ 1111 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG-------SARSELTYS--PEGSRVEKVTMCG------NGD 1111 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc-------eeeeeEEEe--ccCCceEEEEecc------CCC
Confidence 5677778888867789999999999999999886543211 111112222 2344555555543 233
Q ss_pred eEEEecCCCCCCcceEEEEEccCC-cccccceeceeeeecCCCceeEEEEecCCCCCCCce-eEEEEcCCCeeEEecCCC
Q 001109 381 QLFVFGGDEIGSEEVLTMLYLNWS-SRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGT-LPCVLTNPGKLQVYDRPR 458 (1155)
Q Consensus 381 ~llv~gg~d~~~~~~ltvl~l~~~-~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~-~l~v~~~~G~l~~~d~~~ 458 (1155)
. ++.+++| +.+.++.++.. .+-....+.....+...+.+++|..... +.+. .++.++..+.++.||.+.
T Consensus 1112 ~-~Av~t~D----G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~----~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1112 Q-FAVSTKD----GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTA----IVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred e-EEEEcCC----CeEEEEEccccccccceeeeeecccccCCCceEEeecccc----cccceeEEEEEeccceEEecchh
Confidence 3 4445554 67888888762 1111111222334555677777764432 2233 677788888888898652
Q ss_pred CCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCC
Q 001109 459 FSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGI 538 (1155)
Q Consensus 459 ~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~ 538 (1155)
.. + .|. . + .++..|.
T Consensus 1183 ~~------------------------~-------------------~w~-l------k---------------~~~~hG~ 1197 (1431)
T KOG1240|consen 1183 RH------------------------D-------------------AWR-L------K---------------NQLRHGL 1197 (1431)
T ss_pred hh------------------------h-------------------HHh-h------h---------------cCccccc
Confidence 11 0 010 0 0 0111222
Q ss_pred CCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCC---eEEEEe--CC
Q 001109 539 PCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTL---NLAIGS--SS 613 (1155)
Q Consensus 539 ~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~---~Lasgs--~d 613 (1155)
. .++ +.+|.++++++|..-|.+-+||++-+. ++..++. ++..++..|..+|..+ ..++++ ..
T Consensus 1198 v--TSi-~idp~~~WlviGts~G~l~lWDLRF~~--~i~sw~~--------P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1198 V--TSI-VIDPWCNWLVIGTSRGQLVLWDLRFRV--PILSWEH--------PARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred e--eEE-EecCCceEEEEecCCceEEEEEeecCc--eeecccC--------cccCCcceEEeeccCCCCceEEEecccCC
Confidence 1 123 667888899999999999999997665 2333432 3457899999888655 444444 46
Q ss_pred CeEEEEEeccCccccceeeecc-CCceE-EEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCc
Q 001109 614 GLVWLYNLIKSSNEETLNLVTE-TGKEV-HILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTF 691 (1155)
Q Consensus 614 G~V~lwd~~~~~~~~~~~~v~~-~~~~~-~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~ 691 (1155)
+.|.+|++.++..... +... ....+ +.+...+.. +.+.-+....++..-+..+.+|+.|+.|+.||...+
T Consensus 1265 nevs~wn~~~g~~~~v--l~~s~~~p~ls~~~Ps~~~~------kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTV--LWASDGAPILSYALPSNDAR------KPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred CceeeeecccCcceEE--EEcCCCCcchhhhcccccCC------CCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 8999999998743211 1100 00000 000000000 012222222334344558889999999999999876
Q ss_pred cEE
Q 001109 692 SVL 694 (1155)
Q Consensus 692 ~~l 694 (1155)
...
T Consensus 1337 ~~s 1339 (1431)
T KOG1240|consen 1337 EIS 1339 (1431)
T ss_pred ccc
Confidence 543
No 191
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.27 E-value=4.8e-10 Score=126.91 Aligned_cols=141 Identities=15% Similarity=0.144 Sum_probs=104.1
Q ss_pred CeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCE
Q 001109 594 SVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGAR 673 (1155)
Q Consensus 594 ~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~ 673 (1155)
+|...+|+|||++||+-++||.+|||++.+.... ..++.--+...||+|||||++
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl-------------------------g~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL-------------------------GVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHH-------------------------HHHHhhccceEEEEEcCCccE
Confidence 7899999999999999999999999999885421 122334567899999999999
Q ss_pred EEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCcc---------ccCC-------CCCCCCCCCC--
Q 001109 674 LAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNL---------TISP-------KDSDINSSND-- 735 (1155)
Q Consensus 674 LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~---------~~~~-------~~~~~~~~~~-- 735 (1155)
||+|++|-.|.||.+...+++...+ ||.++|..++|+++-....- ..++ +.....+..+
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGq---GHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~ 423 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQ---GHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCP 423 (636)
T ss_pred EEecCCcceEEEEEeccceEEEecc---ccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCc
Confidence 9999999999999999999987654 69999999999964332110 0000 0011111111
Q ss_pred --------CCCcEEEEEeCCceEEEEECCCCceee
Q 001109 736 --------TKKETLFFMTKDAHIVVCDSTTGHILF 762 (1155)
Q Consensus 736 --------pd~~~L~s~s~Dg~I~vwd~~tG~~l~ 762 (1155)
-..-++-+.+.|-.+++||+..-.+..
T Consensus 424 ~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 424 LSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ccccccccceEEEeecccccceEEEEecchhhccc
Confidence 134567899999999999987544433
No 192
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=2.5e-10 Score=136.81 Aligned_cols=196 Identities=12% Similarity=0.034 Sum_probs=133.0
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcC---CeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEe-cCCeEEEE--EC
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQD---GRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSIS-SGNEIQLW--DL 112 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~D---G~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vW--Dl 112 (1155)
.+|...+...+|||||+.||..+.+ .+|++|+..+.+........+....++|+|||.+|+.++ .+|.+.|| |+
T Consensus 200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence 4667789999999999999988754 479999987654322222223345789999999888765 57766555 66
Q ss_pred CCCceeeeecCCCceeEEEEecCCCEEEEEe-CCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccc
Q 001109 113 EARRITSTLPWESNITAFSVIFGTSYMYIGD-EYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREK 191 (1155)
Q Consensus 113 ~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~-~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~ 191 (1155)
.++...........+++..|+|||+.|+..+ .+|..+||.++...+... .+
T Consensus 280 ~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~----~l------------------------ 331 (429)
T PRK01742 280 NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS----LV------------------------ 331 (429)
T ss_pred CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE----Ee------------------------
Confidence 6666443223346688899999999776554 678889998876442211 00
Q ss_pred cccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccc
Q 001109 192 GKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSK 271 (1155)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~ 271 (1155)
+ . .. .. ..|+|++ +.|+.++.++. .+||+.+++.......
T Consensus 332 ~----------------~-------~~--~~-----~~~SpDG--------~~ia~~~~~~i-~~~Dl~~g~~~~lt~~- 371 (429)
T PRK01742 332 G----------------G-------RG--YS-----AQISADG--------KTLVMINGDNV-VKQDLTSGSTEVLSST- 371 (429)
T ss_pred c----------------C-------CC--CC-----ccCCCCC--------CEEEEEcCCCE-EEEECCCCCeEEecCC-
Confidence 0 0 00 12 5688874 46777777665 4599988876543110
Q ss_pred ccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 272 DLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
....+..|+ |||+.|+.++.+|.+.+|.+.+
T Consensus 372 -------------------------------~~~~~~~~s-PdG~~i~~~s~~g~~~~l~~~~ 402 (429)
T PRK01742 372 -------------------------------FLDESPSIS-PNGIMIIYSSTQGLGKVLQLVS 402 (429)
T ss_pred -------------------------------CCCCCceEC-CCCCEEEEEEcCCCceEEEEEE
Confidence 012356798 9999999999999999988643
No 193
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.27 E-value=4.9e-11 Score=131.17 Aligned_cols=134 Identities=19% Similarity=0.186 Sum_probs=109.1
Q ss_pred CCeEEEEEecCCC-eEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCC
Q 001109 593 ESVSALEFCSVTL-NLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFG 671 (1155)
Q Consensus 593 ~~V~~lafspdg~-~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg 671 (1155)
.+|..+.|.+++. .||+|+.|..|++|.+......+.. ..+ .-...|..|...|++|.|+|+|
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-------~~V---------~y~s~Ls~H~~aVN~vRf~p~g 77 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-------MKV---------EYLSSLSRHTRAVNVVRFSPDG 77 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-------eeE---------EEeecccCCcceeEEEEEcCCc
Confidence 3899999999988 9999999999999999876543210 001 1124678899999999999999
Q ss_pred CEEEEEeCCCcEEEEecC--------C-----c-cEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCC
Q 001109 672 ARLAVGFECSQVAMLDIS--------T-----F-SVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTK 737 (1155)
Q Consensus 672 ~~LAsGs~Dg~V~lWDi~--------~-----~-~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd 737 (1155)
..||+|+++|.|.+|-.. + . ..+.. ..+.+|..-|..|+|+ ||
T Consensus 78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~-k~lr~h~~diydL~Ws----------------------~d 134 (434)
T KOG1009|consen 78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVK-KVLRGHRDDIYDLAWS----------------------PD 134 (434)
T ss_pred CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEE-EEecccccchhhhhcc----------------------CC
Confidence 999999999999999766 2 1 12221 2346799999999999 88
Q ss_pred CcEEEEEeCCceEEEEECCCCceeeeee
Q 001109 738 KETLFFMTKDAHIVVCDSTTGHILFSRS 765 (1155)
Q Consensus 738 ~~~L~s~s~Dg~I~vwd~~tG~~l~~~~ 765 (1155)
++.|++++.|.++++||+..|.++..+.
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~G~l~~~~~ 162 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHAGQLLAILD 162 (434)
T ss_pred CceeeeeeccceEEEEEeccceeEeecc
Confidence 9999999999999999999999988873
No 194
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=8.9e-11 Score=133.90 Aligned_cols=193 Identities=15% Similarity=0.108 Sum_probs=133.5
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeee--ee---eeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEE
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSL--IH---VFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYN 620 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~--l~---~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd 620 (1155)
.+++.+..+.||+.||+||.|++. +...+ .+ ++.+. +-||...||.+++|+....|++++.||+||+|+
T Consensus 351 ~v~~n~~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~-----l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 351 VVPSNGEHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGT-----LLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWE 424 (577)
T ss_pred EecCCceEEEeeccCceeeeeccC-CCCCcccccCcchhccc-----eeccccceeeeeecccccceeeecCCceEEeec
Confidence 445666789999999999999775 21111 01 12211 238999999999999999999999999999999
Q ss_pred eccCcc--cc---------ceeeeccC--------CceEEEecCCCCCceeEEeec-------CCCCeEEEEEcCCCCEE
Q 001109 621 LIKSSN--EE---------TLNLVTET--------GKEVHILPGGDGPQCKALFSV-------LNSPICNLKFSNFGARL 674 (1155)
Q Consensus 621 ~~~~~~--~~---------~~~~v~~~--------~~~~~~~~~~~g~~~~~~l~~-------h~~~VtslafSpdg~~L 674 (1155)
...... .+ .+.+.+.. ....+.+..-+..+....|.. -...+.-|...|.+.+.
T Consensus 425 ~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~ 504 (577)
T KOG0642|consen 425 PTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADIT 504 (577)
T ss_pred cCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCee
Confidence 876543 00 01111000 000000000000001111111 12346677888999999
Q ss_pred EEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEE
Q 001109 675 AVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCD 754 (1155)
Q Consensus 675 AsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd 754 (1155)
.++-.|+.|+++|..++..++... .|...|+++++. |.|.+|.+++.|+.|++|.
T Consensus 505 ~~~hed~~Ir~~dn~~~~~l~s~~---a~~~svtslai~----------------------~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 505 FTAHEDRSIRFFDNKTGKILHSMV---AHKDSVTSLAID----------------------PNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred EecccCCceecccccccccchhee---eccceecceeec----------------------CCCceEEeecCCceeehhh
Confidence 999999999999999999988764 499999999998 7788999999999999999
Q ss_pred CCCCceeeeeecccC
Q 001109 755 STTGHILFSRSIHHQ 769 (1155)
Q Consensus 755 ~~tG~~l~~~~~~~~ 769 (1155)
.....|+...+.|++
T Consensus 560 ld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 560 LDVKTCVLESTAHRK 574 (577)
T ss_pred ccchheeeccccccc
Confidence 988888777766665
No 195
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=6.7e-10 Score=120.73 Aligned_cols=166 Identities=17% Similarity=0.268 Sum_probs=118.6
Q ss_pred CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCC------CceeeeecC-C-CceeEEEEecCCCEEEEEeCCCcEEEEE
Q 001109 81 PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA------RRITSTLPW-E-SNITAFSVIFGTSYMYIGDEYGMVYVLK 152 (1155)
Q Consensus 81 ~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t------~~~~~~l~~-~-~~Vtsva~spd~~~l~~G~~dG~V~vw~ 152 (1155)
.|.+.|.+|+|+.++++|++++.|..++||+++. .+.+..... | +.|.|++|....+.+++|..+|+|-..+
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 4678999999999999999999999999999864 234443332 3 8899999999999999999999986664
Q ss_pred ecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEee
Q 001109 153 YDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQF 232 (1155)
Q Consensus 153 ~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p 232 (1155)
+.+.. .+ |.. ++ -+ ..+.|.+ +..+|
T Consensus 134 iEt~q--si---~V~-~~-------------~~------------------------------~~~~VY~-----m~~~P 159 (609)
T KOG4227|consen 134 IETKQ--SI---YVA-NE-------------NN------------------------------NRGDVYH-----MDQHP 159 (609)
T ss_pred cccce--ee---eee-cc-------------cC------------------------------cccceee-----cccCC
Confidence 44321 11 100 00 00 1234455 88899
Q ss_pred cccccccccccEEEEEEcCCeEEEEEccCCe-EEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEE
Q 001109 233 QKHVNSTLGFSQLLLVYANGLIILWDVSEDK-VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWA 311 (1155)
Q Consensus 233 ~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s 311 (1155)
.+ +.+++.+.+|.|.+||.+... .... .+.. . ..+...++.|+
T Consensus 160 ~D--------N~~~~~t~~~~V~~~D~Rd~~~~~~~------~~~A----------N------------~~~~F~t~~F~ 203 (609)
T KOG4227|consen 160 TD--------NTLIVVTRAKLVSFIDNRDRQNPISL------VLPA----------N------------SGKNFYTAEFH 203 (609)
T ss_pred CC--------ceEEEEecCceEEEEeccCCCCCCce------eeec----------C------------CCccceeeeec
Confidence 74 579999999999999987654 1110 0000 0 14557788999
Q ss_pred ecCCCeEEEEEcCCcEEEEEcCCCC
Q 001109 312 SNDGSVLAVGYVDGDILLWNLRAAA 336 (1155)
Q Consensus 312 ~pdG~~lasg~~DG~I~lWd~~s~~ 336 (1155)
+..-.+|++.+.-|.+-+||++-..
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred CCCceeEEeccccCCCCceeecccc
Confidence 4466789999999999999987653
No 196
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.23 E-value=2.6e-10 Score=128.48 Aligned_cols=94 Identities=18% Similarity=0.190 Sum_probs=70.0
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
.+++..++++||++|-..|+||..+.. ++. ...|..+|++++|.|| +.+++|+.. +.| +..
T Consensus 193 ~W~~~s~lI~sgGED~kfKvWD~~G~~---Lf~---------S~~~ey~ITSva~npd-~~~~v~S~n-t~R---~~~-- 253 (737)
T KOG1524|consen 193 SWSTQSNIIASGGEDFRFKIWDAQGAN---LFT---------SAAEEYAITSVAFNPE-KDYLLWSYN-TAR---FSS-- 253 (737)
T ss_pred ecCccccceeecCCceeEEeecccCcc---ccc---------CChhccceeeeeeccc-cceeeeeee-eee---ecC--
Confidence 344566789999999999999987654 232 1257789999999999 667776643 333 111
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDIS 689 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~ 689 (1155)
...|.|..++|||||..+|.|...|.|.+=-+-
T Consensus 254 -------------------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~i 286 (737)
T KOG1524|consen 254 -------------------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAI 286 (737)
T ss_pred -------------------------------CCccceEEEEEcCCCceeeccccCceEEEeeee
Confidence 235789999999999999999999988765443
No 197
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.4e-11 Score=148.54 Aligned_cols=207 Identities=19% Similarity=0.214 Sum_probs=154.4
Q ss_pred cCCCCCceEEEEcCCCC-EEEEEEcCCeEEEEccCCceEEEEcC---CCCCEEEEEEEcC-CcEEEEEecCCeEEEEECC
Q 001109 39 YGIPSTASILAFDHVQS-LLAIGTQDGRIKVIGGDNIEGLLVSP---KQLAFKHLEFLQN-QGFLVSISSGNEIQLWDLE 113 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~-lLAsgs~DG~I~vw~~~~~~~~~~~~---~~~~V~~l~Fs~d-g~~LvS~s~Dg~I~vWDl~ 113 (1155)
.-|.|.|..|.|++.+. +||+|..||.|.|||..+.+.-+..+ ....|++|+|+.. +..|++++.+|.+.|||++
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr 192 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR 192 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecccc
Confidence 46889999999999887 99999999999999998866554442 2467999999874 4578899999999999999
Q ss_pred CCceeeeecCCC---ceeEEEEecCCC-EEEEEeCC-C--cEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccc
Q 001109 114 ARRITSTLPWES---NITAFSVIFGTS-YMYIGDEY-G--MVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNH 186 (1155)
Q Consensus 114 t~~~~~~l~~~~---~Vtsva~spd~~-~l~~G~~d-G--~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~ 186 (1155)
..+.+-.+..++ .+..++|+|+.. .|+++++| + .|.+| |.+... .|.++
T Consensus 193 ~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlW--DlR~as---sP~k~------------------- 248 (1049)
T KOG0307|consen 193 KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLW--DLRFAS---SPLKI------------------- 248 (1049)
T ss_pred CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEee--cccccC---Cchhh-------------------
Confidence 888776665553 478999999865 45555544 3 35566 432100 01000
Q ss_pred ccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEE
Q 001109 187 IQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVL 266 (1155)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~ 266 (1155)
|. .|...+++ +.|++.++ .+|++++.|+.|..||..+++++.
T Consensus 249 ----------------~~----------~H~~Gils-----lsWc~~D~-------~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 249 ----------------LE----------GHQRGILS-----LSWCPQDP-------RLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred ----------------hc----------ccccceee-----eccCCCCc-------hhhhcccCCCCeeEecCCCceEee
Confidence 00 02345666 99999875 589999999999999999999876
Q ss_pred EecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCC
Q 001109 267 VRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAAS 337 (1155)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~ 337 (1155)
...- ....+..+.|.+.+-..++.+|-||.|-|+.+.+...
T Consensus 291 ~~p~------------------------------~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 291 ELPA------------------------------QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred ecCC------------------------------CCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence 4110 1467899999855666999999999999999987754
No 198
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.22 E-value=3.3e-10 Score=124.00 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=106.3
Q ss_pred CCcceeeccCCCCCceEEEEcCC-CCEEEEEEcCCeEEEEccCCce--------EEEEcCCCCCEEEEEEEcCC-cEEEE
Q 001109 31 FDPRVTLHYGIPSTASILAFDHV-QSLLAIGTQDGRIKVIGGDNIE--------GLLVSPKQLAFKHLEFLQNQ-GFLVS 100 (1155)
Q Consensus 31 ~~~~~~~~~G~~~~vs~lafsp~-g~lLAsgs~DG~I~vw~~~~~~--------~~~~~~~~~~V~~l~Fs~dg-~~LvS 100 (1155)
++...-+-.||.+.|-.++|+|- ...+|+|+.|.+|.||..+..- ......|...|-.++|.|-- +.|+|
T Consensus 70 ~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLls 149 (472)
T KOG0303|consen 70 MDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLS 149 (472)
T ss_pred cCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhh
Confidence 44444455799999999999995 4699999999999999875322 12223467788899999864 57889
Q ss_pred EecCCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceee
Q 001109 101 ISSGNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLI 161 (1155)
Q Consensus 101 ~s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~ 161 (1155)
++.|++|.+||+.+|..+.++.++.-|.++.|+.||.+|++.+.|..|+|| |.+.++++
T Consensus 150 ag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~--dpr~~~~v 208 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVI--DPRRGTVV 208 (472)
T ss_pred ccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEE--cCCCCcEe
Confidence 999999999999999998889877999999999999999999999999998 66665544
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.22 E-value=1.6e-09 Score=125.46 Aligned_cols=210 Identities=18% Similarity=0.181 Sum_probs=134.7
Q ss_pred CCCceEEEEcCCCCEEEEEEc-CCeEEEEccCC-c---eEEEEcCCCCCEEEEEEEcCCcEEEEEe-cCCeEEEEECCCC
Q 001109 42 PSTASILAFDHVQSLLAIGTQ-DGRIKVIGGDN-I---EGLLVSPKQLAFKHLEFLQNQGFLVSIS-SGNEIQLWDLEAR 115 (1155)
Q Consensus 42 ~~~vs~lafsp~g~lLAsgs~-DG~I~vw~~~~-~---~~~~~~~~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vWDl~t~ 115 (1155)
.+.+..++|+|+|++|+++.. ++.|.+|+.+. . +.+....+......++|+|++++|++++ .++.|.+||+++.
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 346778999999998887764 78999998752 1 2222222333466788999999887665 5699999999863
Q ss_pred -ceee------eecCCCceeEEEEecCCCEEEEEeC-CCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccc
Q 001109 116 -RITS------TLPWESNITAFSVIFGTSYMYIGDE-YGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHI 187 (1155)
Q Consensus 116 -~~~~------~l~~~~~Vtsva~spd~~~l~~G~~-dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~ 187 (1155)
.+.. ..........++|+|+++++|+..+ +++|.+|+++...+++.. + .. +.
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~----~--~~--------~~------ 218 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC----V--QT--------LD------ 218 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE----E--EE--------Ee------
Confidence 3211 1222345678999999999999987 889999998854333210 0 00 00
Q ss_pred cccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEc-CCeEEEEEccCCe-EE
Q 001109 188 QREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYA-NGLIILWDVSEDK-VV 265 (1155)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~-dG~I~lWd~~~~~-~~ 265 (1155)
.+|....+ ...... +.++|++ ++++++.+ ++.|.+|++.+.. .+
T Consensus 219 ----------------~~p~~~~~-----~~~~~~-----i~~~pdg--------~~lyv~~~~~~~I~v~~i~~~~~~~ 264 (330)
T PRK11028 219 ----------------MMPADFSD-----TRWAAD-----IHITPDG--------RHLYACDRTASLISVFSVSEDGSVL 264 (330)
T ss_pred ----------------cCCCcCCC-----Ccccee-----EEECCCC--------CEEEEecCCCCeEEEEEEeCCCCeE
Confidence 00110000 011112 7889974 56777755 6899999986532 22
Q ss_pred EEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEc-CCcEEEEEcCC
Q 001109 266 LVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYV-DGDILLWNLRA 334 (1155)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~-DG~I~lWd~~s 334 (1155)
...+. ++. ......++|+ |||++|+++.. +++|.+|+++.
T Consensus 265 ~~~~~--------~~~--------------------~~~p~~~~~~-~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 265 SFEGH--------QPT--------------------ETQPRGFNID-HSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEeEE--------Eec--------------------cccCCceEEC-CCCCEEEEEEccCCcEEEEEEcC
Confidence 22111 000 1234568898 99999998876 89999998863
No 200
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.21 E-value=8.1e-10 Score=116.74 Aligned_cols=231 Identities=16% Similarity=0.252 Sum_probs=157.2
Q ss_pred cCCCCCceEEEEcCCC-----CEEEEEEcCCeEEEEccCCc--eE----EE----EcCCCCCEEEEEEEc-CCcEEEEEe
Q 001109 39 YGIPSTASILAFDHVQ-----SLLAIGTQDGRIKVIGGDNI--EG----LL----VSPKQLAFKHLEFLQ-NQGFLVSIS 102 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g-----~lLAsgs~DG~I~vw~~~~~--~~----~~----~~~~~~~V~~l~Fs~-dg~~LvS~s 102 (1155)
..|+..++.+-|.|+. ++||+.+ -.+|||..... .. .+ .....+++++..|.. +-+++.+.|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 6899999999999987 4787754 37999976521 11 11 112356888888866 345777888
Q ss_pred cCCeEEEEECCCCce---eeeecC-CCceeEEEEecCCC-EEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeece
Q 001109 103 SGNEIQLWDLEARRI---TSTLPW-ESNITAFSVIFGTS-YMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNH 177 (1155)
Q Consensus 103 ~Dg~I~vWDl~t~~~---~~~l~~-~~~Vtsva~spd~~-~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~ 177 (1155)
-|.+..|||++++.. -..|-. ...|..++|..++. .+++.+.||+|+++++-.-+.
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH------------------- 231 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH------------------- 231 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc-------------------
Confidence 999999999999843 223334 48999999998665 677889999999985432110
Q ss_pred eEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcC-CeEEE
Q 001109 178 LLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYAN-GLIIL 256 (1155)
Q Consensus 178 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~d-G~I~l 256 (1155)
+..+|+-|.. ..+... ++|++.+. +++++-..| ..|.+
T Consensus 232 ---------------------STIIYE~p~~--------~~pLlR-----LswnkqDp-------nymATf~~dS~~V~i 270 (364)
T KOG0290|consen 232 ---------------------STIIYEDPSP--------STPLLR-----LSWNKQDP-------NYMATFAMDSNKVVI 270 (364)
T ss_pred ---------------------ceEEecCCCC--------CCccee-----eccCcCCc-------hHHhhhhcCCceEEE
Confidence 1223332211 345566 88888776 577776665 57888
Q ss_pred EEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCC
Q 001109 257 WDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAA 336 (1155)
Q Consensus 257 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~ 336 (1155)
.|++-......+ ++ .|...|..++|++..+..|+|++.|..+.+||+....
T Consensus 271 LDiR~P~tpva~------L~-----------------------~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 271 LDIRVPCTPVAR------LR-----------------------NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred EEecCCCcceeh------hh-----------------------cCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 898765432221 11 2688999999995567899999999999999998753
Q ss_pred CccccccCCCCCCcccccccCCCCCccEEEEEecc
Q 001109 337 STKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSA 371 (1155)
Q Consensus 337 ~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~ 371 (1155)
.. ....|+ +.+. ....|..++|++
T Consensus 322 ~~------~~~dPi----lay~-a~~EVNqi~Ws~ 345 (364)
T KOG0290|consen 322 RE------NGEDPI----LAYT-AGGEVNQIQWSS 345 (364)
T ss_pred cc------CCCCch----hhhh-ccceeeeeeecc
Confidence 31 112233 2333 345788899975
No 201
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=4.5e-10 Score=121.31 Aligned_cols=155 Identities=19% Similarity=0.202 Sum_probs=113.2
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCC-CCeEEEEEecCCCeEEEEeC----CCeEEEEEeccCccc
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATES-ESVSALEFCSVTLNLAIGSS----SGLVWLYNLIKSSNE 627 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~-~~V~~lafspdg~~Lasgs~----dG~V~lwd~~~~~~~ 627 (1155)
.+.+++.||+||+||++...-.. .+...++. .+..+++....++.++.|+. +-.|.+||++.....
T Consensus 86 ~v~s~ssDG~Vr~wD~Rs~~e~a---------~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~ 156 (376)
T KOG1188|consen 86 GVISCSSDGTVRLWDIRSQAESA---------RISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL 156 (376)
T ss_pred eeEEeccCCeEEEEEeecchhhh---------heeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch
Confidence 68899999999999997654111 11222333 57788888778888888864 568999999875321
Q ss_pred cceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEecCCccE---EEEeccCCCC
Q 001109 628 ETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFG-ARLAVGFECSQVAMLDISTFSV---LFITDSLSNS 703 (1155)
Q Consensus 628 ~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg-~~LAsGs~Dg~V~lWDi~~~~~---l~~~~~~~~h 703 (1155)
....+..|.+.||+|+|.|.. ..|++||.||.|.|+|+....- |.+ .-.|
T Consensus 157 -----------------------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~---viN~ 210 (376)
T KOG1188|consen 157 -----------------------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH---VINH 210 (376)
T ss_pred -----------------------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH---hhcc
Confidence 012346799999999999965 6899999999999999976421 111 1257
Q ss_pred CCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeee
Q 001109 704 NSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFS 763 (1155)
Q Consensus 704 ~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~ 763 (1155)
.+.|-.+.|.. +.=+.|...|.+.+..+|+++.|.....
T Consensus 211 ~sSI~~igw~~---------------------~~ykrI~clTH~Etf~~~ele~~~~~~~ 249 (376)
T KOG1188|consen 211 GSSIHLIGWLS---------------------KKYKRIMCLTHMETFAIYELEDGSEETW 249 (376)
T ss_pred cceeeeeeeec---------------------CCcceEEEEEccCceeEEEccCCChhhc
Confidence 78899999982 2223588999999999999998774433
No 202
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=2e-08 Score=118.04 Aligned_cols=112 Identities=15% Similarity=0.184 Sum_probs=82.7
Q ss_pred CCCCceEEEEcCC------------CCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCC----cEEEEEec
Q 001109 41 IPSTASILAFDHV------------QSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQ----GFLVSISS 103 (1155)
Q Consensus 41 ~~~~vs~lafsp~------------g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg----~~LvS~s~ 103 (1155)
|+..|+.+.|.|. .-+||++...|+|.|||......+.-+ ++..++..++|.+.+ ..|++...
T Consensus 54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ 133 (1062)
T KOG1912|consen 54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHG 133 (1062)
T ss_pred CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecC
Confidence 6677888888762 237888888899999998765444333 456789999997753 46778888
Q ss_pred CCeEEEEECCCCceeeeecCC-CceeEEEEec-CCCEEEEEeCCCcEEEEE
Q 001109 104 GNEIQLWDLEARRITSTLPWE-SNITAFSVIF-GTSYMYIGDEYGMVYVLK 152 (1155)
Q Consensus 104 Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~sp-d~~~l~~G~~dG~V~vw~ 152 (1155)
-++|.+||.++|+........ ....|+.++| |.+.+.+-+..|.|-+.+
T Consensus 134 ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 134 SSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred CcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEe
Confidence 899999999999988776644 5667799998 455666666677665444
No 203
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.20 E-value=1.5e-09 Score=116.27 Aligned_cols=110 Identities=9% Similarity=0.106 Sum_probs=82.8
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEE-ecCCeEEEEECCCCceeeeec-CC
Q 001109 47 ILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSI-SSGNEIQLWDLEARRITSTLP-WE 124 (1155)
Q Consensus 47 ~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~-s~Dg~I~vWDl~t~~~~~~l~-~~ 124 (1155)
-+.|||+|+++|+.+.- ++-|-|..+.+....+.--..|..+.|..|.-+++.+ ..|+.|++|++....--+.+. ++
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 46899999999999765 7777777665543222223468889999998776655 578899999999888777765 56
Q ss_pred CceeEEEEecCCCEEEEEe-CCCcEEEEEecCCC
Q 001109 125 SNITAFSVIFGTSYMYIGD-EYGMVYVLKYDTEE 157 (1155)
Q Consensus 125 ~~Vtsva~spd~~~l~~G~-~dG~V~vw~~d~~~ 157 (1155)
..+.++.++|||+.++.-+ -+-.|.||.+.+..
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~ 125 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK 125 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccce
Confidence 8899999999997666544 46678889776644
No 204
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=2.4e-09 Score=110.54 Aligned_cols=168 Identities=14% Similarity=0.193 Sum_probs=113.6
Q ss_pred EEEEEEcCCcEEEEEecCCeEEEEECCCC----------ceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecC
Q 001109 87 KHLEFLQNQGFLVSISSGNEIQLWDLEAR----------RITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDT 155 (1155)
Q Consensus 87 ~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~----------~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~ 155 (1155)
..-+++|.+++|++++.+|+|-+..+.+- ..+-..+.| ++|..++|. +++|++|++ |.|+-|.|..
T Consensus 14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E 90 (325)
T KOG0649|consen 14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNE 90 (325)
T ss_pred HHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehh
Confidence 34467899999999999999999988542 123333444 899999997 556666654 9999999875
Q ss_pred CCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccc
Q 001109 156 EEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKH 235 (1155)
Q Consensus 156 ~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~ 235 (1155)
....+..++. +.+ .+|...+ ..... -|+++.+.|...
T Consensus 91 ~~es~~~K~l----------------------we~--------------~~P~~~~--~~evP-----eINam~ldP~en 127 (325)
T KOG0649|consen 91 EEESLATKRL----------------------WEV--------------KIPMQVD--AVEVP-----EINAMWLDPSEN 127 (325)
T ss_pred hhhhccchhh----------------------hhh--------------cCccccC--cccCC-----ccceeEeccCCC
Confidence 4321110000 000 0000100 00012 244488888764
Q ss_pred ccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCC
Q 001109 236 VNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDG 315 (1155)
Q Consensus 236 ~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG 315 (1155)
. ++.++.|+.+.-||+.+|+...... +|...|-++.-. ...
T Consensus 128 S--------i~~AgGD~~~y~~dlE~G~i~r~~r------------------------------GHtDYvH~vv~R-~~~ 168 (325)
T KOG0649|consen 128 S--------ILFAGGDGVIYQVDLEDGRIQREYR------------------------------GHTDYVHSVVGR-NAN 168 (325)
T ss_pred c--------EEEecCCeEEEEEEecCCEEEEEEc------------------------------CCcceeeeeeec-ccC
Confidence 3 7777799999999999999877521 257788888875 456
Q ss_pred CeEEEEEcCCcEEEEEcCCCCCcc
Q 001109 316 SVLAVGYVDGDILLWNLRAAASTK 339 (1155)
Q Consensus 316 ~~lasg~~DG~I~lWd~~s~~~~~ 339 (1155)
..+++|+.||++|+||.++.+...
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVS 192 (325)
T ss_pred cceeecCCCccEEEEeccccceeE
Confidence 679999999999999999987543
No 205
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.17 E-value=4.1e-08 Score=105.65 Aligned_cols=123 Identities=16% Similarity=0.192 Sum_probs=77.3
Q ss_pred CcEEEEEECCCc-EEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccc
Q 001109 551 ERLYIAGYRDGS-TRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEET 629 (1155)
Q Consensus 551 ~~lLaTgs~Dgt-VrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~ 629 (1155)
|.++||+|..|| |||||..++.+ ++.+... .....|.+++|||++.+||++++.|+|.||.+........
T Consensus 193 Gt~vATaStkGTLIRIFdt~~g~~--l~E~RRG-------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~ 263 (346)
T KOG2111|consen 193 GTLVATASTKGTLIRIFDTEDGTL--LQELRRG-------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTED 263 (346)
T ss_pred ccEEEEeccCcEEEEEEEcCCCcE--eeeeecC-------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcc
Confidence 448999999998 89999999983 4555432 2335899999999999999999999999999987432111
Q ss_pred eeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 001109 630 LNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQV 683 (1155)
Q Consensus 630 ~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V 683 (1155)
.+ .+.....+.+.++-+..--...|....++..-++|..+-..++.-+.||+-
T Consensus 264 ~~-SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy 316 (346)
T KOG2111|consen 264 ES-SSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSY 316 (346)
T ss_pred cc-ccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcE
Confidence 00 000000011111111101123445556677777887775555555666754
No 206
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=3.3e-09 Score=126.98 Aligned_cols=200 Identities=16% Similarity=0.035 Sum_probs=132.7
Q ss_pred CCCCCceEEEEcCCCCEEEEEEc---CCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEE-ecCC--eEEEEECC
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQ---DGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSI-SSGN--EIQLWDLE 113 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~---DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~-s~Dg--~I~vWDl~ 113 (1155)
.+...+...+|||||+.||..+. +..|.+|+..+.+..........+..+.|+|||.+|+.+ +.++ .|.+||++
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 34567889999999999997653 357889988776543322233445678999999988865 3344 58999999
Q ss_pred CCceeeeecCCCceeEEEEecCCCEEEEEeC-CCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccc
Q 001109 114 ARRITSTLPWESNITAFSVIFGTSYMYIGDE-YGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKG 192 (1155)
Q Consensus 114 t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~-dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~ 192 (1155)
++........+..+....|+|||+.|+..+. +|..+||.++...+... ++..
T Consensus 276 tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~----~lt~----------------------- 328 (429)
T PRK03629 276 SGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ----RITW----------------------- 328 (429)
T ss_pred CCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE----Eeec-----------------------
Confidence 8876554445567889999999998866554 56677787776543321 0000
Q ss_pred ccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcC---CeEEEEEccCCeEEEEec
Q 001109 193 KAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYAN---GLIILWDVSEDKVVLVRG 269 (1155)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~d---G~I~lWd~~~~~~~~~~~ 269 (1155)
. ...... ..|+|++ ++|+.+..+ ..|.+||+.++.......
T Consensus 329 ----------------~-------~~~~~~-----~~~SpDG--------~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 329 ----------------E-------GSQNQD-----ADVSSDG--------KFMVMVSSNGGQQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred ----------------C-------CCCccC-----EEECCCC--------CEEEEEEccCCCceEEEEECCCCCeEEeCC
Confidence 0 011122 6788874 456665443 358889998887554310
Q ss_pred ccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCc---EEEEEcCCC
Q 001109 270 SKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGD---ILLWNLRAA 335 (1155)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~---I~lWd~~s~ 335 (1155)
.....+..|+ |||+.|+.++.||. +.+|++...
T Consensus 373 --------------------------------~~~~~~p~~S-pDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 373 --------------------------------TFLDETPSIA-PNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred --------------------------------CCCCCCceEC-CCCCEEEEEEcCCCceEEEEEECCCC
Confidence 0112356898 99999999998875 667777543
No 207
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.16 E-value=6.2e-10 Score=117.42 Aligned_cols=227 Identities=14% Similarity=0.133 Sum_probs=147.5
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceE-EEE------cCCCCCEEEEEEEc--CCcEEEEEecCCeEEEE
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEG-LLV------SPKQLAFKHLEFLQ--NQGFLVSISSGNEIQLW 110 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~-~~~------~~~~~~V~~l~Fs~--dg~~LvS~s~Dg~I~vW 110 (1155)
.+-+.+.|+-|.|++.-||+-. |..|.+|+.+.... ... ..++.....-.|+| |+..+++ ..|++++.|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEE
Confidence 3446899999999999998876 78899999765432 111 11244566677888 5555554 458999999
Q ss_pred ECCCCceeeeecC-C-CceeEEEEecCCC-EEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccc
Q 001109 111 DLEARRITSTLPW-E-SNITAFSVIFGTS-YMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHI 187 (1155)
Q Consensus 111 Dl~t~~~~~~l~~-~-~~Vtsva~spd~~-~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~ 187 (1155)
|+++......++. | ..|..+.|.|..+ +|+++++||.|++|+ .+.-+ .|..
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD--~R~tk-------~pv~----------------- 252 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWD--TRKTK-------FPVQ----------------- 252 (370)
T ss_pred EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEe--ccCCC-------cccc-----------------
Confidence 9999988887763 4 5799999999977 678899999999994 43211 1111
Q ss_pred cccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEE
Q 001109 188 QREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLV 267 (1155)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~ 267 (1155)
+++.+. ..|.++.|+|..+ .+|++|+.|..|.||.+..-.-...
T Consensus 253 -------------------------el~~Hs----HWvW~VRfn~~hd-------qLiLs~~SDs~V~Lsca~svSSE~q 296 (370)
T KOG1007|consen 253 -------------------------ELPGHS----HWVWAVRFNPEHD-------QLILSGGSDSAVNLSCASSVSSEQQ 296 (370)
T ss_pred -------------------------ccCCCc----eEEEEEEecCccc-------eEEEecCCCceeEEEeccccccccc
Confidence 111122 2555699999876 6899999999999998754321110
Q ss_pred ecccccccccccccCCCCCCCCCCccccc-ccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEc
Q 001109 268 RGSKDLQLKTEIVDDPSKNAGHNLSETVS-DNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNL 332 (1155)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~ 332 (1155)
. .++.... +..+.........+.+..+ .+.+|+..|++++|++.|-=.||+=+.||.+.|=.+
T Consensus 297 i-~~~~des-e~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 297 I-EFEDDES-ESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred c-ccccccc-cCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 0 0000000 0000000000001111111 244689999999999888889999999999988544
No 208
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.15 E-value=1.5e-10 Score=136.38 Aligned_cols=158 Identities=16% Similarity=0.231 Sum_probs=120.1
Q ss_pred CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCce
Q 001109 81 PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGK 159 (1155)
Q Consensus 81 ~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~ 159 (1155)
.|..+|.++.|...|.+++++++|..++||..+++.++++.++| +.|+.++++.....+++++.|..|+||.+....
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~-- 265 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA-- 265 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc--
Confidence 46678999999999999999999999999999999999999988 899999999999999999999999999764421
Q ss_pred eeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccccccc
Q 001109 160 LIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNST 239 (1155)
Q Consensus 160 l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~ 239 (1155)
+ ... +.+ +.+ +|++++|+|.
T Consensus 266 p--------vsv------------------Lrg-----------------------htg-----avtaiafsP~------ 285 (1113)
T KOG0644|consen 266 P--------VSV------------------LRG-----------------------HTG-----AVTAIAFSPR------ 285 (1113)
T ss_pred h--------HHH------------------Hhc-----------------------ccc-----ceeeeccCcc------
Confidence 1 000 001 234 4555999994
Q ss_pred ccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEE
Q 001109 240 LGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLA 319 (1155)
Q Consensus 240 ~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~la 319 (1155)
.+.+.||++++||.+-.-.+. ++.|.... +.+.+.++.|- .+|..++
T Consensus 286 ------~sss~dgt~~~wd~r~~~~~y-------------~prp~~~~-------------~~~~~~s~~~~-~~~~~f~ 332 (1113)
T KOG0644|consen 286 ------ASSSDDGTCRIWDARLEPRIY-------------VPRPLKFT-------------EKDLVDSILFE-NNGDRFL 332 (1113)
T ss_pred ------ccCCCCCceEecccccccccc-------------CCCCCCcc-------------cccceeeeecc-ccccccc
Confidence 256789999999987211111 11122211 24567788886 8999999
Q ss_pred EEEcCCcEEEEEcC
Q 001109 320 VGYVDGDILLWNLR 333 (1155)
Q Consensus 320 sg~~DG~I~lWd~~ 333 (1155)
||+.|+.-..|.+.
T Consensus 333 Tgs~d~ea~n~e~~ 346 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFE 346 (1113)
T ss_pred cccCCcccccchhh
Confidence 99999998888764
No 209
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=7.7e-09 Score=106.90 Aligned_cols=150 Identities=11% Similarity=0.058 Sum_probs=106.2
Q ss_pred CcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcccc
Q 001109 549 LVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEE 628 (1155)
Q Consensus 549 ~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~ 628 (1155)
|..+-+++++.|+.+.-||+.++++...+ .||+.-|-+|.-...+..+.+|++||+||+||.++.+..
T Consensus 124 P~enSi~~AgGD~~~y~~dlE~G~i~r~~-----------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v- 191 (325)
T KOG0649|consen 124 PSENSILFAGGDGVIYQVDLEDGRIQREY-----------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHV- 191 (325)
T ss_pred cCCCcEEEecCCeEEEEEEecCCEEEEEE-----------cCCcceeeeeeecccCcceeecCCCccEEEEecccccee-
Confidence 34444555568999999999999855332 389999999998666667899999999999999987542
Q ss_pred ceeeeccCCceEEEecCCCCCceeEEeecCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCe
Q 001109 629 TLNLVTETGKEVHILPGGDGPQCKALFSVLNS-PICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPV 707 (1155)
Q Consensus 629 ~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~-~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V 707 (1155)
..+..-+.. ..+..|.+ .|-||+.+.| +|+.|+- ..+.||+++...+...+. ..++|
T Consensus 192 ------------~~ie~yk~~---~~lRp~~g~wigala~~ed--WlvCGgG-p~lslwhLrsse~t~vfp----ipa~v 249 (325)
T KOG0649|consen 192 ------------SMIEPYKNP---NLLRPDWGKWIGALAVNED--WLVCGGG-PKLSLWHLRSSESTCVFP----IPARV 249 (325)
T ss_pred ------------EEeccccCh---hhcCcccCceeEEEeccCc--eEEecCC-CceeEEeccCCCceEEEe----cccce
Confidence 222211111 12234544 5888887655 6877764 458999999877665443 46788
Q ss_pred eEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECC
Q 001109 708 LYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDST 756 (1155)
Q Consensus 708 ~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~ 756 (1155)
..+.|. ...+++++.-.+|.-|-+.
T Consensus 250 ~~v~F~------------------------~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 250 HLVDFV------------------------DDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred eEeeee------------------------cceEEEeccccceeeeeec
Confidence 889886 4457777877788888764
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.15 E-value=1.1e-09 Score=123.59 Aligned_cols=128 Identities=15% Similarity=0.161 Sum_probs=94.9
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
.++|+|.-|+|+++||.||+|.-++- ++ .++- ....+|.|++|.|++..++.+.. |.+.|=-+..+.
T Consensus 111 RW~~dGtgLlt~GEDG~iKiWSrsGM-LR--Stl~---------Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~ 177 (737)
T KOG1524|consen 111 RWSPDGAGLLTAGEDGVIKIWSRSGM-LR--STVV---------QNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANS 177 (737)
T ss_pred ccCCCCceeeeecCCceEEEEeccch-HH--HHHh---------hcCceeEEEEECCCCCceEEecC-CeEEEeeccccc
Confidence 45678888999999999999986542 21 1111 12248999999999987766543 455555554432
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNS 705 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~ 705 (1155)
. ...+..|.|-|.|+.|+|....+|+|++|-..+|||-.+ ..++.- ..|..
T Consensus 178 k-------------------------~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S---~~~ey 228 (737)
T KOG1524|consen 178 K-------------------------IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTS---AAEEY 228 (737)
T ss_pred c-------------------------eeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccccC---Chhcc
Confidence 1 134578999999999999999999999999999999875 445543 34899
Q ss_pred CeeEEEEeec
Q 001109 706 PVLYLAVKSL 715 (1155)
Q Consensus 706 ~V~slafs~~ 715 (1155)
||+|++|.+.
T Consensus 229 ~ITSva~npd 238 (737)
T KOG1524|consen 229 AITSVAFNPE 238 (737)
T ss_pred ceeeeeeccc
Confidence 9999999843
No 211
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.14 E-value=3.1e-09 Score=112.40 Aligned_cols=153 Identities=18% Similarity=0.193 Sum_probs=113.4
Q ss_pred cCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCC-eEEEEeCCCeEEEEEeccCcccc
Q 001109 550 VERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTL-NLAIGSSSGLVWLYNLIKSSNEE 628 (1155)
Q Consensus 550 ~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~-~Lasgs~dG~V~lwd~~~~~~~~ 628 (1155)
+.+++.|.|-|-|..+||+..+.. ..++++ +-.|..+|..|+|...+. ++|+.+.||.||+||++.-....
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~---~~vkTQ-----LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST 233 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVS---GTVKTQ-----LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST 233 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccc---cceeeE-----EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce
Confidence 456899999999999999988731 122322 227889999999999765 67999999999999998754320
Q ss_pred ceeeeccCCceEEEecCCCCCceeEEeecC--CCCeEEEEEcCCC-CEEEEEeCCC-cEEEEecCCccEEEEeccCCCCC
Q 001109 629 TLNLVTETGKEVHILPGGDGPQCKALFSVL--NSPICNLKFSNFG-ARLAVGFECS-QVAMLDISTFSVLFITDSLSNSN 704 (1155)
Q Consensus 629 ~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h--~~~VtslafSpdg-~~LAsGs~Dg-~V~lWDi~~~~~l~~~~~~~~h~ 704 (1155)
+ .++.. ..+...|++++.. +++|+-..|. .|.|.|++.+..... .+.+|.
T Consensus 234 -------------I-----------IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva--~L~~H~ 287 (364)
T KOG0290|consen 234 -------------I-----------IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA--RLRNHQ 287 (364)
T ss_pred -------------E-----------EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee--hhhcCc
Confidence 0 11211 3456678887754 5788755554 589999998754332 246899
Q ss_pred CCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC
Q 001109 705 SPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 705 ~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t 757 (1155)
+.|..++|-+.+ ...|.+++.|..+.|||+..
T Consensus 288 a~VNgIaWaPhS---------------------~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 288 ASVNGIAWAPHS---------------------SSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ccccceEecCCC---------------------CceeeecCCcceEEEEeccc
Confidence 999999998533 56899999999999999875
No 212
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.12 E-value=2e-09 Score=117.50 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=114.5
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEe--CCCeEEEEEeccCccccce
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGS--SSGLVWLYNLIKSSNEETL 630 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs--~dG~V~lwd~~~~~~~~~~ 630 (1155)
.|+..=+ ..|.|+|+.+-. ++.+++. ...+...+.++++++.+.+||.-+ ..|.|.|||..+-
T Consensus 99 RLvV~Le-e~IyIydI~~Mk--lLhTI~t------~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl------ 163 (391)
T KOG2110|consen 99 RLVVCLE-ESIYIYDIKDMK--LLHTIET------TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL------ 163 (391)
T ss_pred eEEEEEc-ccEEEEecccce--eehhhhc------cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc------
Confidence 3443433 349999998755 3444432 113445688888888888998643 3599999998762
Q ss_pred eeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEecCCccEEEEeccCCC-CCCCee
Q 001109 631 NLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQ-VAMLDISTFSVLFITDSLSN-SNSPVL 708 (1155)
Q Consensus 631 ~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~-V~lWDi~~~~~l~~~~~~~~-h~~~V~ 708 (1155)
++...+..|.+++-||||+|+|.+|||||+.|+ |||+.+.++..+++++. | ....|.
T Consensus 164 -------------------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR--G~~~~~Iy 222 (391)
T KOG2110|consen 164 -------------------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR--GTYPVSIY 222 (391)
T ss_pred -------------------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC--CceeeEEE
Confidence 233567899999999999999999999999998 57999999999998764 3 245799
Q ss_pred EEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC
Q 001109 709 YLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 709 slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t 757 (1155)
+|+|+ ||+++|.+.|.-++|.|+-+++
T Consensus 223 SL~Fs----------------------~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 223 SLSFS----------------------PDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEEC----------------------CCCCeEEEecCCCeEEEEEecc
Confidence 99999 8999999999999999998765
No 213
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=5.2e-09 Score=125.48 Aligned_cols=176 Identities=12% Similarity=0.101 Sum_probs=116.7
Q ss_pred CCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecC---CeEEEEECCCCceeeeecCCCceeEEEEecCCCEE
Q 001109 63 DGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSG---NEIQLWDLEARRITSTLPWESNITAFSVIFGTSYM 139 (1155)
Q Consensus 63 DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~D---g~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l 139 (1155)
+.+|.|||.++........+...+....|+|||.+|+.++.+ .+|.+||+.+++........+...+++|+|||+.|
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L 262 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL 262 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence 468999998776544333456789999999999999988754 46999999988643222233345578999999988
Q ss_pred EEEe-CCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCccccccc
Q 001109 140 YIGD-EYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIR 218 (1155)
Q Consensus 140 ~~G~-~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (1155)
+.+. .+|.+.||.+|...+.+. .+.. +..
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~~~----~lt~----------------------------------------------~~~ 292 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGTPS----QLTS----------------------------------------------GAG 292 (429)
T ss_pred EEEEecCCcEEEEEEECCCCCeE----eecc----------------------------------------------CCC
Confidence 8764 688888888887543321 0100 011
Q ss_pred ccccceeeEEEEeecccccccccccEEEEEE-cCCeEEEEEccCCe-EEEEecccccccccccccCCCCCCCCCCccccc
Q 001109 219 SKLRFFVEIRLLQFQKHVNSTLGFSQLLLVY-ANGLIILWDVSEDK-VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVS 296 (1155)
Q Consensus 219 ~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~-~dG~I~lWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1155)
.+.. ..|+|++ ++|+.++ .+|...||++.... .....+
T Consensus 293 ~~~~-----~~wSpDG--------~~i~f~s~~~g~~~I~~~~~~~~~~~~l~--------------------------- 332 (429)
T PRK01742 293 NNTE-----PSWSPDG--------QSILFTSDRSGSPQVYRMSASGGGASLVG--------------------------- 332 (429)
T ss_pred CcCC-----EEECCCC--------CEEEEEECCCCCceEEEEECCCCCeEEec---------------------------
Confidence 2233 8899984 4455544 57888888865321 111101
Q ss_pred ccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCC
Q 001109 297 DNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAA 336 (1155)
Q Consensus 297 ~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~ 336 (1155)
+.. .+..|+ |||+.|+.++.++ +.+||+.++.
T Consensus 333 ----~~~--~~~~~S-pDG~~ia~~~~~~-i~~~Dl~~g~ 364 (429)
T PRK01742 333 ----GRG--YSAQIS-ADGKTLVMINGDN-VVKQDLTSGS 364 (429)
T ss_pred ----CCC--CCccCC-CCCCEEEEEcCCC-EEEEECCCCC
Confidence 112 356798 9999999988765 5569988764
No 214
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.08 E-value=6.2e-09 Score=111.79 Aligned_cols=220 Identities=11% Similarity=0.105 Sum_probs=154.9
Q ss_pred CCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCce---EEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEEC-CCC
Q 001109 41 IPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIE---GLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDL-EAR 115 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~---~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl-~t~ 115 (1155)
....|+|.||++|+..+|++..+..|.||...+.. ...++ .|...|+.+.|+|...+|++++.|..-.||.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 34789999999999999999999999999765543 33333 46789999999999999999999999999998 444
Q ss_pred ceee---eecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccc
Q 001109 116 RITS---TLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKG 192 (1155)
Q Consensus 116 ~~~~---~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~ 192 (1155)
.-.. -++.....+++.++|..+.+++|+....|.||-|+.+.. +-+..
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd------WWVsK----------------------- 139 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND------WWVSK----------------------- 139 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc------eehhh-----------------------
Confidence 3222 234557899999999999999999999999998877541 11100
Q ss_pred ccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccc
Q 001109 193 KAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKD 272 (1155)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~ 272 (1155)
+. ..++.+ .|+++.|+|+.- +|++|+.|+..|++..--..+-.
T Consensus 140 ----------------hi------kkPirS-tv~sldWhpnnV--------LlaaGs~D~k~rVfSayIK~Vde------ 182 (361)
T KOG1523|consen 140 ----------------HI------KKPIRS-TVTSLDWHPNNV--------LLAAGSTDGKCRVFSAYIKGVDE------ 182 (361)
T ss_pred ----------------hh------CCcccc-ceeeeeccCCcc--------eecccccCcceeEEEEeeecccc------
Confidence 00 112222 445599999853 68889999999999753221110
Q ss_pred cccccccccCCCCCCCCCCc--ccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 273 LQLKTEIVDDPSKNAGHNLS--ETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
+ +..+.- |...+ ..-.|.....+.|..+.|+ |.|.+||-.+.|.++.+=|....
T Consensus 183 ---k---pap~pW--gsk~PFG~lm~E~~~~ggwvh~v~fs-~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 183 ---K---PAPTPW--GSKMPFGQLMSEASSSGGWVHGVLFS-PSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ---C---CCCCCC--ccCCcHHHHHHhhccCCCceeeeEeC-CCCCEeeEecCCCceEEeecCCC
Confidence 0 000000 00000 0001111236789999999 99999999999999999887654
No 215
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=2e-08 Score=114.78 Aligned_cols=293 Identities=16% Similarity=0.220 Sum_probs=179.6
Q ss_pred cCCCCCceEEEEcCCCC-EEEEEEcCCeEEEEccCCceEEEEcC-CCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCc
Q 001109 39 YGIPSTASILAFDHVQS-LLAIGTQDGRIKVIGGDNIEGLLVSP-KQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARR 116 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~-lLAsgs~DG~I~vw~~~~~~~~~~~~-~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~ 116 (1155)
.+|+..-+.+..+|||+ +||+|..--.|+|||..+...-+... ....|...-.+.|=..++-...|.+|.+-.- .-
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak--~G 125 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK--YG 125 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh--cC
Confidence 58888899999999999 47899999999999999877655432 2446666666666556676777888865432 11
Q ss_pred eeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccc
Q 001109 117 ITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAF 196 (1155)
Q Consensus 117 ~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~ 196 (1155)
.-++++.+..-..++++.-..=|++++....|+ .+..+.|++. .||.+.
T Consensus 126 ~hy~~RIP~~GRDm~y~~~scDly~~gsg~evY--RlNLEqGrfL-~P~~~~---------------------------- 174 (703)
T KOG2321|consen 126 RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVY--RLNLEQGRFL-NPFETD---------------------------- 174 (703)
T ss_pred eeeeeecCcCCccccccCCCccEEEeecCcceE--EEEccccccc-cccccc----------------------------
Confidence 223334443345566653333344444455554 4455544432 122211
Q ss_pred ccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccc
Q 001109 197 NASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLK 276 (1155)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~ 276 (1155)
.+.++. |..+|.. .+|++|+.+|.|.+||.+....+..... .
T Consensus 175 --------------------~~~lN~-----v~in~~h--------gLla~Gt~~g~VEfwDpR~ksrv~~l~~-----~ 216 (703)
T KOG2321|consen 175 --------------------SGELNV-----VSINEEH--------GLLACGTEDGVVEFWDPRDKSRVGTLDA-----A 216 (703)
T ss_pred --------------------ccccee-----eeecCcc--------ceEEecccCceEEEecchhhhhheeeec-----c
Confidence 133344 8888874 3688888899999999987765543111 1
Q ss_pred cccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCccccccc
Q 001109 277 TEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLS 356 (1155)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~ 356 (1155)
..++..|.. .....|+++.|+ .||-.+++|..+|.|.|+|+++..+... |
T Consensus 217 ~~v~s~pg~--------------~~~~svTal~F~-d~gL~~aVGts~G~v~iyDLRa~~pl~~-----------k---- 266 (703)
T KOG2321|consen 217 SSVNSHPGG--------------DAAPSVTALKFR-DDGLHVAVGTSTGSVLIYDLRASKPLLV-----------K---- 266 (703)
T ss_pred cccCCCccc--------------cccCcceEEEec-CCceeEEeeccCCcEEEEEcccCCceee-----------c----
Confidence 111111100 124569999998 7799999999999999999998754321 1
Q ss_pred CCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCC
Q 001109 357 SGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNE 436 (1155)
Q Consensus 357 ~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~ 436 (1155)
......||..+.|... +++..+++... +.+.+|+-.-.. +...+.....+.|+|++|+++
T Consensus 267 dh~~e~pi~~l~~~~~-----~~q~~v~S~Dk-----~~~kiWd~~~Gk--------~~asiEpt~~lND~C~~p~sG-- 326 (703)
T KOG2321|consen 267 DHGYELPIKKLDWQDT-----DQQNKVVSMDK-----RILKIWDECTGK--------PMASIEPTSDLNDFCFVPGSG-- 326 (703)
T ss_pred ccCCccceeeeccccc-----CCCceEEecch-----HHhhhcccccCC--------ceeeccccCCcCceeeecCCc--
Confidence 1234578899998641 22333333322 345554321100 122344556688999999876
Q ss_pred CCceeEEEEcCCCeeEEecC
Q 001109 437 SHGTLPCVLTNPGKLQVYDR 456 (1155)
Q Consensus 437 ~~~~~l~v~~~~G~l~~~d~ 456 (1155)
.++++..++.+..|-+
T Consensus 327 ----m~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 327 ----MFFTANESSKMHTYYI 342 (703)
T ss_pred ----eEEEecCCCcceeEEc
Confidence 6666666677665543
No 216
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.07 E-value=1.3e-07 Score=110.36 Aligned_cols=105 Identities=22% Similarity=0.306 Sum_probs=77.5
Q ss_pred CCEEEEEE-cCCeEEEEccCCceEEEEcCCCCCE-EEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCCCceeEEE
Q 001109 54 QSLLAIGT-QDGRIKVIGGDNIEGLLVSPKQLAF-KHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESNITAFS 131 (1155)
Q Consensus 54 g~lLAsgs-~DG~I~vw~~~~~~~~~~~~~~~~V-~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva 131 (1155)
++++++.. .+|.|.|.|..+.+.+...+....+ ..+.|+|||++++.++.|+.|.++|+.+++.+.+++.......++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIA 84 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEE
Confidence 45665544 5799999999988877666543344 457899999999999999999999999999999998887789999
Q ss_pred EecCCCEEEEEe-CCCcEEEEEecCCCcee
Q 001109 132 VIFGTSYMYIGD-EYGMVYVLKYDTEEGKL 160 (1155)
Q Consensus 132 ~spd~~~l~~G~-~dG~V~vw~~d~~~~~l 160 (1155)
+++||++++++. ..+.+.|+ |.++.++
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~--D~~tle~ 112 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVI--DAETLEP 112 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEE--ETTT--E
T ss_pred EcCCCCEEEEEecCCCceeEe--ccccccc
Confidence 999999999886 57778776 5544333
No 217
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.07 E-value=8.2e-09 Score=109.64 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=92.3
Q ss_pred CCeEEEEEecCCCeEEEE--eCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCC
Q 001109 593 ESVSALEFCSVTLNLAIG--SSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNF 670 (1155)
Q Consensus 593 ~~V~~lafspdg~~Lasg--s~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpd 670 (1155)
.+|.+++|+|+|..+|+. ..++.|.+|+++.. ..+.-+...+.+|.|||+
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~----------------------------~i~~~~~~~~n~i~wsP~ 111 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK----------------------------KIFSFGTQPRNTISWSPD 111 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCccc----------------------------EeEeecCCCceEEEECCC
Confidence 479999999999987654 46689999999632 112334667889999999
Q ss_pred CCEEEEEeCC---CcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeC-
Q 001109 671 GARLAVGFEC---SQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTK- 746 (1155)
Q Consensus 671 g~~LAsGs~D---g~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~- 746 (1155)
|++||+|+.+ |.|.+||+++...+.+.. |. .+..++|+ |||++|++++.
T Consensus 112 G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~-~~t~~~Ws----------------------PdGr~~~ta~t~ 164 (194)
T PF08662_consen 112 GRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HS-DATDVEWS----------------------PDGRYLATATTS 164 (194)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCEEeeccc----cC-cEEEEEEc----------------------CCCCEEEEEEec
Confidence 9999998754 669999999888876532 33 47899999 99999999875
Q ss_pred -----CceEEEEECCCCceeeeee
Q 001109 747 -----DAHIVVCDSTTGHILFSRS 765 (1155)
Q Consensus 747 -----Dg~I~vwd~~tG~~l~~~~ 765 (1155)
|..++||+.. |+++....
T Consensus 165 ~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred cceeccccEEEEEec-CeEeEecc
Confidence 8999999974 88876653
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=1.3e-08 Score=122.28 Aligned_cols=118 Identities=16% Similarity=0.030 Sum_probs=83.7
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcC---CeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEE-EEecCC--eEEEEECC
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQD---GRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLV-SISSGN--EIQLWDLE 113 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~D---G~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~Lv-S~s~Dg--~I~vWDl~ 113 (1155)
.+...+...+|+|||+.||..+.+ ..|++|+..+.+.............+.|+|||++|+ +.+.++ .|.+||+.
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~ 280 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG 280 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence 455678899999999999988743 479999987665443333334456789999998775 445554 69999999
Q ss_pred CCceeeeecCCCceeEEEEecCCCEEEEEe-CCCcEEEEEecCCC
Q 001109 114 ARRITSTLPWESNITAFSVIFGTSYMYIGD-EYGMVYVLKYDTEE 157 (1155)
Q Consensus 114 t~~~~~~l~~~~~Vtsva~spd~~~l~~G~-~dG~V~vw~~d~~~ 157 (1155)
+++...........+.++|+|||++|+..+ .+|...+|.++...
T Consensus 281 ~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 281 SRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred CCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 887543222234557789999999887665 45666667666644
No 219
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=2.9e-08 Score=119.36 Aligned_cols=119 Identities=15% Similarity=0.014 Sum_probs=85.6
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEc---CCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEE-EEecCCe--EEEEEC
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQ---DGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLV-SISSGNE--IQLWDL 112 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~---DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~Lv-S~s~Dg~--I~vWDl 112 (1155)
..|...+...+|+|||+.||..+. +..|.+|+..+.+..........+....|+|||..|+ +.+.++. |.+||+
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence 356678999999999999998764 4689999987765543333455677889999998775 5555554 777899
Q ss_pred CCCceeeeecCCCceeEEEEecCCCEEEEEe-CCCcEEEEEecCCC
Q 001109 113 EARRITSTLPWESNITAFSVIFGTSYMYIGD-EYGMVYVLKYDTEE 157 (1155)
Q Consensus 113 ~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~-~dG~V~vw~~d~~~ 157 (1155)
+++....-....+..+...|+|||++|+..+ .+|...+|.+|...
T Consensus 278 ~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 278 RSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred CCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC
Confidence 8887644333335567899999999887766 45655556666543
No 220
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=2.2e-09 Score=121.52 Aligned_cols=238 Identities=16% Similarity=0.227 Sum_probs=151.4
Q ss_pred ccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEE--cCCCCCEEEEEEEcC--CcEEEEEecCCeEEEEECC
Q 001109 38 HYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLV--SPKQLAFKHLEFLQN--QGFLVSISSGNEIQLWDLE 113 (1155)
Q Consensus 38 ~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~--~~~~~~V~~l~Fs~d--g~~LvS~s~Dg~I~vWDl~ 113 (1155)
..||.+=|+||+|+.+|.+||+|+.|-++.|||.-....++. .+|.+.|-++.|.|. .+.++++..|..|+|+|+.
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 369999999999999999999999999999999865444432 357889999999884 4688999999999999998
Q ss_pred CCc----------eeeeecCC-CceeEEEEecCC-CEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEee
Q 001109 114 ARR----------ITSTLPWE-SNITAFSVIFGT-SYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLE 181 (1155)
Q Consensus 114 t~~----------~~~~l~~~-~~Vtsva~spd~-~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~ 181 (1155)
.-+ ....+.-| .+|.-++..|++ +.+-++++||+++- ||.++-... -|... ++..++.
T Consensus 126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQ--yDiREph~c-----~p~~~---~~~~l~n 195 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQ--YDIREPHVC-----NPDED---CPSILVN 195 (758)
T ss_pred cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceee--ecccCCccC-----Ccccc---ccHHHHH
Confidence 521 12223333 678889999998 67889999999854 455431100 00000 0000011
Q ss_pred EecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccC
Q 001109 182 FCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSE 261 (1155)
Q Consensus 182 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~ 261 (1155)
++|+ .+ -..++..+|..+ .+|++|+.|--++|+|.+.
T Consensus 196 y~~~----------------------------------li--elk~ltisp~rp-------~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 196 YNPQ----------------------------------LI--ELKCLTISPSRP-------YYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred hchh----------------------------------hh--eeeeeeecCCCC-------ceEEecCCCchhhhhhhhh
Confidence 1111 01 123488999876 5899999999999999532
Q ss_pred CeEEEEecccccccccccccCCCC--------CCCCCCccc-ccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEc
Q 001109 262 DKVVLVRGSKDLQLKTEIVDDPSK--------NAGHNLSET-VSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNL 332 (1155)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~ 332 (1155)
..... ++. +....-++. ..+|..... ... ..-..++-++|+ |+|.-|++....-.|+++|+
T Consensus 233 ~lks~-~s~------~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~--~~~~~~t~vtfn-pNGtElLvs~~gEhVYlfdv 302 (758)
T KOG1310|consen 233 VLKSF-RSD------GTMNTCPPKDCRCVRYFSPGHLKNSQGNLD--RYITCCTYVTFN-PNGTELLVSWGGEHVYLFDV 302 (758)
T ss_pred hccCC-CCC------ccccCCCCcccchhheecCccccCcccccc--cceeeeEEEEEC-CCCcEEEEeeCCeEEEEEee
Confidence 11110 000 000000000 112221100 011 011224567788 99999999988889999999
Q ss_pred CCCCCc
Q 001109 333 RAAAST 338 (1155)
Q Consensus 333 ~s~~~~ 338 (1155)
...+.+
T Consensus 303 n~~~~~ 308 (758)
T KOG1310|consen 303 NEDKSP 308 (758)
T ss_pred cCCCCc
Confidence 887654
No 221
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.01 E-value=1.6e-05 Score=102.79 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=73.6
Q ss_pred CceEEEEcCCCCE--EEEEEcCC--eEEEEc--cCC-ceEEEEcC------CCCCEEEEEEEcCCcEEEEEecCCeEEEE
Q 001109 44 TASILAFDHVQSL--LAIGTQDG--RIKVIG--GDN-IEGLLVSP------KQLAFKHLEFLQNQGFLVSISSGNEIQLW 110 (1155)
Q Consensus 44 ~vs~lafsp~g~l--LAsgs~DG--~I~vw~--~~~-~~~~~~~~------~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vW 110 (1155)
.+...+|++..+. +|.+.... .|.+.. ... .+.+...+ ....|.++.|.++...|+.+..+|.|.+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 5677788887653 44443333 344422 222 22333332 24689999999999999999999999999
Q ss_pred ----ECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEE
Q 001109 111 ----DLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVL 151 (1155)
Q Consensus 111 ----Dl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw 151 (1155)
|..+...-..=..++.|.|++||||...|++.+.+|++-+.
T Consensus 103 ~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 103 REDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLM 147 (928)
T ss_pred EccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence 65554432222345789999999999999999999987554
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=5.2e-08 Score=116.76 Aligned_cols=117 Identities=11% Similarity=0.005 Sum_probs=82.8
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcC---CeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEE-EEecCCeEEEEE--CC
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQD---GRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLV-SISSGNEIQLWD--LE 113 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~D---G~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~Lv-S~s~Dg~I~vWD--l~ 113 (1155)
.+...+.+.+|+|||+.||..+.+ ..|.+|+..+.+..........+....|+|||..|+ +.+.++...||. +.
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 456778899999999999987743 469999987765543322344567889999998886 566777766665 44
Q ss_pred CCceeeeecC-CCceeEEEEecCCCEEEEEe-CCCcEEEEEecCCC
Q 001109 114 ARRITSTLPW-ESNITAFSVIFGTSYMYIGD-EYGMVYVLKYDTEE 157 (1155)
Q Consensus 114 t~~~~~~l~~-~~~Vtsva~spd~~~l~~G~-~dG~V~vw~~d~~~ 157 (1155)
++. ...+.. .+.++...|+|||++|+..+ .+|...+|.++...
T Consensus 273 ~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 273 GSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred CCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence 444 333433 34567789999999887655 45777888877654
No 223
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=1.3e-08 Score=114.47 Aligned_cols=326 Identities=11% Similarity=0.096 Sum_probs=181.7
Q ss_pred ccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCc
Q 001109 301 VEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRG 380 (1155)
Q Consensus 301 ~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~ 380 (1155)
|.+.|..+.|. ..|..|++|+.|-.|.+||..+...... . ..+|..-|..-+|.+ +.. .
T Consensus 141 H~GcVntV~FN-~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--------------f-~SGH~~NvfQaKFiP----~s~-d 199 (559)
T KOG1334|consen 141 HKGCVNTVHFN-QRGDVLASGSDDLQVVVWDWVSGSPKLS--------------F-ESGHCNNVFQAKFIP----FSG-D 199 (559)
T ss_pred CCCccceeeec-ccCceeeccCccceEEeehhhccCcccc--------------c-ccccccchhhhhccC----CCC-C
Confidence 68899999999 9999999999999999999887643211 1 124555555555554 222 2
Q ss_pred eEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCC
Q 001109 381 QLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFS 460 (1155)
Q Consensus 381 ~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~ 460 (1155)
+-++..+.+ +.+++-.+..+...+.. ...-++.+++--+++.|.. +..++..++++-+.-+|+..-.
T Consensus 200 ~ti~~~s~d----gqvr~s~i~~t~~~e~t----~rl~~h~g~vhklav~p~s-----p~~f~S~geD~~v~~~Dlr~~~ 266 (559)
T KOG1334|consen 200 RTIVTSSRD----GQVRVSEILETGYVENT----KRLAPHEGPVHKLAVEPDS-----PKPFLSCGEDAVVFHIDLRQDV 266 (559)
T ss_pred cCceecccc----Cceeeeeeccccceecc----eecccccCccceeeecCCC-----CCcccccccccceeeeeeccCC
Confidence 223443333 23333322222211111 1223455666555555543 3455666667766666643211
Q ss_pred CcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCC
Q 001109 461 PKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPC 540 (1155)
Q Consensus 461 ~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~ 540 (1155)
+...+. ... +...- .+.+
T Consensus 267 ------------pa~~~~-cr~-~~~~~-~v~L----------------------------------------------- 284 (559)
T KOG1334|consen 267 ------------PAEKFV-CRE-ADEKE-RVGL----------------------------------------------- 284 (559)
T ss_pred ------------ccceee-eec-cCCcc-ceee-----------------------------------------------
Confidence 000000 000 00000 0000
Q ss_pred cccccccCCc-CcEEEEEECCCcEEEEeCCCCCeeeeee-eCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEE
Q 001109 541 QLHDAEDYLV-ERLYIAGYRDGSTRIWDATYPTLSLIHV-FGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWL 618 (1155)
Q Consensus 541 ~~~l~~~s~~-~~lLaTgs~DgtVrlWD~~~~~l~~l~~-l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~l 618 (1155)
... +..|. ...+++|+.|..+|++|...-....... ++.-............|++++|+.++.-|.+.-.|-.|++
T Consensus 285 -~~I-a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL 362 (559)
T KOG1334|consen 285 -YTI-AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL 362 (559)
T ss_pred -eeE-ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence 001 22222 2378999999999999976432111110 1100000011123347999999988888777777888888
Q ss_pred EEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCC--CeEEEEE-cCCCCEEEEEeCCCcEEEEecCCccEEE
Q 001109 619 YNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNS--PICNLKF-SNFGARLAVGFECSQVAMLDISTFSVLF 695 (1155)
Q Consensus 619 wd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~--~Vtslaf-Spdg~~LAsGs~Dg~V~lWDi~~~~~l~ 695 (1155)
|.-.-+. +.. ....++.+. ....++++|.. .|.+|-| -|...++++||..|.|.|||-.++.++.
T Consensus 363 F~~~~~~--G~~-p~~~s~~~~---------~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 363 FNKSMGD--GSE-PDPSSPREQ---------YVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred ecccccc--CCC-CCCCcchhh---------ccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence 8433221 100 000000000 01124678864 5777765 7999999999999999999999988764
Q ss_pred EeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCcee
Q 001109 696 ITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHIL 761 (1155)
Q Consensus 696 ~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l 761 (1155)
- +.+...-|.+|.=. |--.+|++.+-|..|+||-..+-+.+
T Consensus 431 ~---MegDr~VVNCLEpH----------------------P~~PvLAsSGid~DVKIWTP~~~er~ 471 (559)
T KOG1334|consen 431 F---MEGDRHVVNCLEPH----------------------PHLPVLASSGIDHDVKIWTPLTAERA 471 (559)
T ss_pred H---hhcccceEeccCCC----------------------CCCchhhccCCccceeeecCCccccc
Confidence 2 33333356666544 45568999999999999987554443
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.94 E-value=2e-09 Score=120.24 Aligned_cols=196 Identities=15% Similarity=0.192 Sum_probs=152.7
Q ss_pred CceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecC
Q 001109 44 TASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPW 123 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~ 123 (1155)
..+.+.|+.+|+.|+.|+.-|.|-.+|-.+....+...-...|..+.|..+.. ++++.+.+.+.|+| ..|.-++.++-
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq-~~AVAQK~y~yvYD-~~GtElHClk~ 208 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQ-FFAVAQKKYVYVYD-NNGTELHCLKR 208 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchH-HHHhhhhceEEEec-CCCcEEeehhh
Confidence 46789999999999999999999999988887777665567899999999855 55566788899999 56788889999
Q ss_pred CCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeee
Q 001109 124 ESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFY 203 (1155)
Q Consensus 124 ~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 203 (1155)
+..|..+.|.|.--+|+++++.|-++..++.+ |+++.. +..
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~--GklVa~---~~t---------------------------------- 249 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVST--GKLVAS---IRT---------------------------------- 249 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeech--hhhhHH---HHc----------------------------------
Confidence 99999999999999999999999876654433 444310 000
Q ss_pred cCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCC
Q 001109 204 CMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDP 283 (1155)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (1155)
..+.+.. +.-+|.+ ..+-+|..+|+|.||.......+.- +.
T Consensus 250 ------------~~G~~~v-----m~qNP~N--------aVih~GhsnGtVSlWSP~skePLvK-------iL------- 290 (545)
T KOG1272|consen 250 ------------GAGRTDV-----MKQNPYN--------AVIHLGHSNGTVSLWSPNSKEPLVK-------IL------- 290 (545)
T ss_pred ------------cCCccch-----hhcCCcc--------ceEEEcCCCceEEecCCCCcchHHH-------HH-------
Confidence 0111112 5567753 2577889999999999877665431 00
Q ss_pred CCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCC
Q 001109 284 SKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAA 336 (1155)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~ 336 (1155)
-|.+.|.++++. ++|.++||.+.|..++|||++.-.
T Consensus 291 ----------------cH~g~V~siAv~-~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 291 ----------------CHRGPVSSIAVD-RGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred ----------------hcCCCcceEEEC-CCCcEEeecccccceeEeeecccc
Confidence 058899999999 999999999999999999998754
No 225
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.93 E-value=1.9e-08 Score=106.86 Aligned_cols=112 Identities=11% Similarity=0.155 Sum_probs=89.9
Q ss_pred CCCCceEEEEcCCCCEEEEEE--cCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecC---CeEEEEECCCC
Q 001109 41 IPSTASILAFDHVQSLLAIGT--QDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSG---NEIQLWDLEAR 115 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs--~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~D---g~I~vWDl~t~ 115 (1155)
..+.|..++|+|+|+.+|+.. .++.|.+|+.. .+.+..++ ..++..+.|+|+|++|+.++.+ |.|.+||+++.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 345699999999999887654 56799999997 44455553 4578899999999999998754 67999999999
Q ss_pred ceeeeecCCCceeEEEEecCCCEEEEEeC------CCcEEEEEecC
Q 001109 116 RITSTLPWESNITAFSVIFGTSYMYIGDE------YGMVYVLKYDT 155 (1155)
Q Consensus 116 ~~~~~l~~~~~Vtsva~spd~~~l~~G~~------dG~V~vw~~d~ 155 (1155)
+.+.+.... .++.++|+|+|+++++++. |..++||.+..
T Consensus 136 ~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 136 KKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 888877644 4789999999999998875 45678887754
No 226
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=3.6e-07 Score=109.99 Aligned_cols=176 Identities=13% Similarity=0.077 Sum_probs=116.6
Q ss_pred eEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEec---CCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEE-
Q 001109 65 RIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISS---GNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMY- 140 (1155)
Q Consensus 65 ~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~---Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~- 140 (1155)
+|.++|.++........+...+...+|+|||++|+.++. +..|.+||+.+++........+.+.+.+|+|||+.|+
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~ 262 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVM 262 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEE
Confidence 788888776554433345678999999999999988764 4689999999887643333456677899999999765
Q ss_pred EEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCccccccccc
Q 001109 141 IGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSK 220 (1155)
Q Consensus 141 ~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 220 (1155)
+.+.+|...||.+|...+.+. ++.. .....
T Consensus 263 ~~~~~g~~~Iy~~d~~~~~~~----~Lt~----------------------------------------------~~~~~ 292 (435)
T PRK05137 263 SLSQGGNTDIYTMDLRSGTTT----RLTD----------------------------------------------SPAID 292 (435)
T ss_pred EEecCCCceEEEEECCCCceE----EccC----------------------------------------------CCCcc
Confidence 556677766676676554321 0100 01112
Q ss_pred ccceeeEEEEeecccccccccccEEEEEEc-CC--eEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccc
Q 001109 221 LRFFVEIRLLQFQKHVNSTLGFSQLLLVYA-NG--LIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSD 297 (1155)
Q Consensus 221 ~~~~v~~v~~~p~~~~~~~~~~~~llsg~~-dG--~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1155)
.. ..|+|++ ++|+.++. +| .|.+||+..+....+..
T Consensus 293 ~~-----~~~spDG--------~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~---------------------------- 331 (435)
T PRK05137 293 TS-----PSYSPDG--------SQIVFESDRSGSPQLYVMNADGSNPRRISF---------------------------- 331 (435)
T ss_pred Cc-----eeEcCCC--------CEEEEEECCCCCCeEEEEECCCCCeEEeec----------------------------
Confidence 23 6788874 45766653 33 68888887766544311
Q ss_pred cccccCCccEEEEEecCCCeEEEEEcCC---cEEEEEcCCC
Q 001109 298 NEQVEKEISSLCWASNDGSVLAVGYVDG---DILLWNLRAA 335 (1155)
Q Consensus 298 ~~~~~~~V~sl~~s~pdG~~lasg~~DG---~I~lWd~~s~ 335 (1155)
+...+....|+ |||+.|+....++ .|.+||+.++
T Consensus 332 ---~~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 332 ---GGGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred ---CCCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECCCC
Confidence 12345667899 9999998876543 5778887544
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=3.1e-07 Score=110.09 Aligned_cols=177 Identities=10% Similarity=0.063 Sum_probs=113.0
Q ss_pred eEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEec---CCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEE
Q 001109 65 RIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISS---GNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYI 141 (1155)
Q Consensus 65 ~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~---Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~ 141 (1155)
+|.++|.++........+...+...+|+|||.+|+.++. +..|.+||+.+++........+.+.+++|+|||+.|+.
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~ 259 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF 259 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEE
Confidence 688888776543333345568999999999999887653 45799999998865433334455667899999998875
Q ss_pred E-eCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCccccccccc
Q 001109 142 G-DEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSK 220 (1155)
Q Consensus 142 G-~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 220 (1155)
. +.+|...||.+|...+++. .+.. ....+
T Consensus 260 ~~~~~g~~~I~~~d~~tg~~~----~lt~----------------------------------------------~~~~~ 289 (429)
T PRK03629 260 ALSKTGSLNLYVMDLASGQIR----QVTD----------------------------------------------GRSNN 289 (429)
T ss_pred EEcCCCCcEEEEEECCCCCEE----EccC----------------------------------------------CCCCc
Confidence 4 5567655565666543322 0000 01122
Q ss_pred ccceeeEEEEeecccccccccccEEEEEEcC-Ce--EEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccc
Q 001109 221 LRFFVEIRLLQFQKHVNSTLGFSQLLLVYAN-GL--IILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSD 297 (1155)
Q Consensus 221 ~~~~v~~v~~~p~~~~~~~~~~~~llsg~~d-G~--I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1155)
.. ..|+|++ ++|+.++.+ |. |.++|+.++.......
T Consensus 290 ~~-----~~wSPDG--------~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~---------------------------- 328 (429)
T PRK03629 290 TE-----PTWFPDS--------QNLAYTSDQAGRPQVYKVNINGGAPQRITW---------------------------- 328 (429)
T ss_pred Cc-----eEECCCC--------CEEEEEeCCCCCceEEEEECCCCCeEEeec----------------------------
Confidence 33 7899984 457666654 44 4444666665443210
Q ss_pred cccccCCccEEEEEecCCCeEEEEEcC---CcEEEEEcCCCC
Q 001109 298 NEQVEKEISSLCWASNDGSVLAVGYVD---GDILLWNLRAAA 336 (1155)
Q Consensus 298 ~~~~~~~V~sl~~s~pdG~~lasg~~D---G~I~lWd~~s~~ 336 (1155)
+...+.+.+|+ |||++|+..+.+ ..|++||+.++.
T Consensus 329 ---~~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 329 ---EGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred ---CCCCccCEEEC-CCCCEEEEEEccCCCceEEEEECCCCC
Confidence 12234578898 999999887654 358889987764
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=2.2e-07 Score=111.38 Aligned_cols=94 Identities=9% Similarity=0.006 Sum_probs=69.1
Q ss_pred CeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecC---CeEEEEECCCCceeeeecCCCceeEEEEecCCCEEE
Q 001109 64 GRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSG---NEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMY 140 (1155)
Q Consensus 64 G~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~D---g~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~ 140 (1155)
.+|.++|.++........+...+...+|+|||++|+.++.+ ..|.+||+.+++.......++.+.+.+|+|||+.|+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 255 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA 255 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 36777777664433333455688899999999999887643 469999999987654333445677899999999876
Q ss_pred -EEeCCCcEEEEEecCCC
Q 001109 141 -IGDEYGMVYVLKYDTEE 157 (1155)
Q Consensus 141 -~G~~dG~V~vw~~d~~~ 157 (1155)
+.+.+|..++|.+|...
T Consensus 256 ~~~~~~g~~~Iy~~d~~~ 273 (427)
T PRK02889 256 VALSRDGNSQIYTVNADG 273 (427)
T ss_pred EEEccCCCceEEEEECCC
Confidence 46778888888888754
No 229
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=1.8e-08 Score=113.28 Aligned_cols=169 Identities=14% Similarity=0.083 Sum_probs=118.4
Q ss_pred CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeec-CC-CceeEEEEecC--CCEEEEEeCCCcEEEEEecCC
Q 001109 81 PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLP-WE-SNITAFSVIFG--TSYMYIGDEYGMVYVLKYDTE 156 (1155)
Q Consensus 81 ~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~-~~-~~Vtsva~spd--~~~l~~G~~dG~V~vw~~d~~ 156 (1155)
+|.+.|..|.|...|..|++++.|.+|.+||+..++....+. +| ..|..-.|.|. .+.+++.+.||.|++=.++..
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 468899999999999999999999999999999998776665 34 45555557663 557888889999877544432
Q ss_pred CceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccc
Q 001109 157 EGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHV 236 (1155)
Q Consensus 157 ~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~ 236 (1155)
. |..... ...++.++|.. ++.-|..+
T Consensus 220 ~-------~~e~t~-----------------------------------------rl~~h~g~vhk-----lav~p~sp- 245 (559)
T KOG1334|consen 220 G-------YVENTK-----------------------------------------RLAPHEGPVHK-----LAVEPDSP- 245 (559)
T ss_pred c-------ceecce-----------------------------------------ecccccCccce-----eeecCCCC-
Confidence 2 111110 01123455555 88888776
Q ss_pred cccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccC---CccEEEEEec
Q 001109 237 NSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEK---EISSLCWASN 313 (1155)
Q Consensus 237 ~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~V~sl~~s~p 313 (1155)
.-++++++|+.+.=.|++.+........ +. .+.. ...+++..+.
T Consensus 246 ------~~f~S~geD~~v~~~Dlr~~~pa~~~~c-----r~----------------------~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 246 ------KPFLSCGEDAVVFHIDLRQDVPAEKFVC-----RE----------------------ADEKERVGLYTIAVDPR 292 (559)
T ss_pred ------CcccccccccceeeeeeccCCccceeee-----ec----------------------cCCccceeeeeEecCCC
Confidence 4799999999999899887654322110 00 0122 4667777744
Q ss_pred CCCeEEEEEcCCcEEEEEcCCCC
Q 001109 314 DGSVLAVGYVDGDILLWNLRAAA 336 (1155)
Q Consensus 314 dG~~lasg~~DG~I~lWd~~s~~ 336 (1155)
+...+|+|+.|..++++|.+...
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~ 315 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRID 315 (559)
T ss_pred CccccccCChhhhhhhhcccchh
Confidence 55699999999999999987653
No 230
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.89 E-value=1.2e-06 Score=99.55 Aligned_cols=110 Identities=17% Similarity=0.206 Sum_probs=81.9
Q ss_pred CCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEec---------------CC
Q 001109 41 IPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISS---------------GN 105 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~---------------Dg 105 (1155)
..-++..+.|||-|.+||+.+..| |.+|+......+....|. -|+.+.|+|++.+|++=+. ++
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeeecC-CceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 345688899999999999988865 999998877666665553 5999999999999998543 34
Q ss_pred eEEEEECCCCceeeeecCCC-c--ee-EEEEecCCCEEEEEeCCCcEEEEEe
Q 001109 106 EIQLWDLEARRITSTLPWES-N--IT-AFSVIFGTSYMYIGDEYGMVYVLKY 153 (1155)
Q Consensus 106 ~I~vWDl~t~~~~~~l~~~~-~--Vt-sva~spd~~~l~~G~~dG~V~vw~~ 153 (1155)
.+.|||..+|.++..+.... + .. -+.|+-++.|+|=- -...++|+.+
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~ 159 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI 159 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec
Confidence 59999999999998887542 2 23 57788888776532 1234555543
No 231
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.89 E-value=6.6e-06 Score=100.99 Aligned_cols=193 Identities=13% Similarity=0.073 Sum_probs=140.8
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCC-----CEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeec
Q 001109 48 LAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQL-----AFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLP 122 (1155)
Q Consensus 48 lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~-----~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~ 122 (1155)
..+.-....+|.++.+..+-+|+......+....+.. ...-+.++++.-++++++.-+.|.+|++..-..-..+.
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~ 172 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK 172 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence 3444556788999999999999987766655544422 33455678887889999999999999987333333455
Q ss_pred CC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccccccee
Q 001109 123 WE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLL 201 (1155)
Q Consensus 123 ~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 201 (1155)
+| +.|-++.++-||+++++.++|.++++|.+|..+ .. .+
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~--~~-----~~--------------------------------- 212 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSRE--VL-----GC--------------------------------- 212 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeeccccc--cc-----Cc---------------------------------
Confidence 55 889999999999999999999999999887743 10 00
Q ss_pred eecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccccccccccc
Q 001109 202 FYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVD 281 (1155)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~ 281 (1155)
....|..+++. +.|.|. +++++++|-+.++|+..-..+....+
T Consensus 213 ----------~~fgHsaRvw~-----~~~~~n----------~i~t~gedctcrvW~~~~~~l~~y~~------------ 255 (967)
T KOG0974|consen 213 ----------TGFGHSARVWA-----CCFLPN----------RIITVGEDCTCRVWGVNGTQLEVYDE------------ 255 (967)
T ss_pred ----------ccccccceeEE-----EEeccc----------eeEEeccceEEEEEecccceehhhhh------------
Confidence 01113455666 999985 59999999999999765333221111
Q ss_pred CCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCC
Q 001109 282 DPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAA 336 (1155)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~ 336 (1155)
| ..+.+..++.. ++...++|++.||.+++|+.....
T Consensus 256 -------h-----------~g~~iw~~~~~-~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 256 -------H-----------SGKGIWKIAVP-IGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred -------h-----------hhcceeEEEEc-CCceEEEeeccCcchhhhhhhccc
Confidence 1 24568888887 788899999999999999987653
No 232
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=8.1e-08 Score=104.63 Aligned_cols=161 Identities=15% Similarity=0.175 Sum_probs=111.5
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCC-eEEEEeCCCeEEEEEeccC
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTL-NLAIGSSSGLVWLYNLIKS 624 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~-~Lasgs~dG~V~lwd~~~~ 624 (1155)
++++.=.-+|.+..|-+||++|-+.... .+++.. ....|+||+|.|.+. .||+|...| |.+|.....
T Consensus 105 aWhqH~~~fava~nddvVriy~ksst~p---t~Lks~--------sQrnvtclawRPlsaselavgCr~g-IciW~~s~t 172 (445)
T KOG2139|consen 105 AWHQHIIAFAVATNDDVVRIYDKSSTCP---TKLKSV--------SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRT 172 (445)
T ss_pred eechhhhhhhhhccCcEEEEeccCCCCC---ceecch--------hhcceeEEEeccCCcceeeeeecce-eEEEEcCcc
Confidence 5555545678888999999999877432 334321 123799999999764 678887765 889988764
Q ss_pred ccccce-eeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEecCCccEEEEeccCCC
Q 001109 625 SNEETL-NLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFE-CSQVAMLDISTFSVLFITDSLSN 702 (1155)
Q Consensus 625 ~~~~~~-~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~-Dg~V~lWDi~~~~~l~~~~~~~~ 702 (1155)
.+.... ...+ ..... +....+| -+|++++|.+||..|++++- |..|.|||++++..+--.. .
T Consensus 173 ln~~r~~~~~s--~~~~q----------vl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~---~ 236 (445)
T KOG2139|consen 173 LNANRNIRMMS--THHLQ----------VLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP---K 236 (445)
T ss_pred ccccccccccc--ccchh----------heeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc---c
Confidence 322110 0000 00000 1112345 58999999999999998775 5679999999987653221 2
Q ss_pred CCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECC
Q 001109 703 SNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDST 756 (1155)
Q Consensus 703 h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~ 756 (1155)
--+++.-|.|| ||+.+|+.++-|+..++|...
T Consensus 237 glgg~slLkwS----------------------Pdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 237 GLGGFSLLKWS----------------------PDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred CCCceeeEEEc----------------------CCCCEEEEecccceeeeehhc
Confidence 35678899999 999999999999999999654
No 233
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=1.7e-08 Score=114.56 Aligned_cols=123 Identities=17% Similarity=0.184 Sum_probs=99.6
Q ss_pred cCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEE
Q 001109 588 TATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKF 667 (1155)
Q Consensus 588 ~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vtslaf 667 (1155)
+.||.+-|++|+|+.||.+|++|++|-.+.|||.-..+. ++.+ -.+|.+.|.|+.|
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl-------------lhsI-----------~TgHtaNIFsvKF 101 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL-------------LHSI-----------STGHTANIFSVKF 101 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcce-------------eeee-----------ecccccceeEEee
Confidence 459999999999999999999999999999999875332 1221 2589999999999
Q ss_pred cCC--CCEEEEEeCCCcEEEEecCCcc-------EEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCC
Q 001109 668 SNF--GARLAVGFECSQVAMLDISTFS-------VLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKK 738 (1155)
Q Consensus 668 Spd--g~~LAsGs~Dg~V~lWDi~~~~-------~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~ 738 (1155)
-|. .+.+++|..|..|+|+|+...+ ...+.+++..|...|..|+-- |++
T Consensus 102 vP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~----------------------p~~ 159 (758)
T KOG1310|consen 102 VPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATA----------------------PNG 159 (758)
T ss_pred eccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecC----------------------CCC
Confidence 984 5689999999999999998521 223344556688888888876 555
Q ss_pred -cEEEEEeCCceEEEEECC
Q 001109 739 -ETLFFMTKDAHIVVCDST 756 (1155)
Q Consensus 739 -~~L~s~s~Dg~I~vwd~~ 756 (1155)
+.+.++++||+|+-+|..
T Consensus 160 PhtfwsasEDGtirQyDiR 178 (758)
T KOG1310|consen 160 PHTFWSASEDGTIRQYDIR 178 (758)
T ss_pred CceEEEecCCcceeeeccc
Confidence 788999999999999965
No 234
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.86 E-value=2.6e-08 Score=109.01 Aligned_cols=116 Identities=13% Similarity=0.184 Sum_probs=97.7
Q ss_pred CCCCceEEEEcCCCCEEEEEE--cCCeEEEEccCCceEEEE-cCCCCCEEEEEEEcCCcEEEEEecCCe-EEEEECCCCc
Q 001109 41 IPSTASILAFDHVQSLLAIGT--QDGRIKVIGGDNIEGLLV-SPKQLAFKHLEFLQNQGFLVSISSGNE-IQLWDLEARR 116 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs--~DG~I~vw~~~~~~~~~~-~~~~~~V~~l~Fs~dg~~LvS~s~Dg~-I~vWDl~t~~ 116 (1155)
++..+.++++++.+.+||.=+ ..|.|.|||..+....-. .-|++++.+|+|+++|..|+++|+.|+ |||+.+.+|+
T Consensus 128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~ 207 (391)
T KOG2110|consen 128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ 207 (391)
T ss_pred CccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc
Confidence 445566677777777999643 359999999987665433 357899999999999999999999887 8899999999
Q ss_pred eeeeecCC---CceeEEEEecCCCEEEEEeCCCcEEEEEecCC
Q 001109 117 ITSTLPWE---SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTE 156 (1155)
Q Consensus 117 ~~~~l~~~---~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~ 156 (1155)
.++.|+.. ..|.+++|+|++++|++.++.++|+|++++..
T Consensus 208 kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 208 KLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 99999743 68999999999999999999999999988764
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.85 E-value=1e-05 Score=94.55 Aligned_cols=88 Identities=15% Similarity=0.092 Sum_probs=58.5
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEE----eCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCC
Q 001109 653 ALFSVLNSPICNLKFSNFGARLAVG----FECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDS 728 (1155)
Q Consensus 653 ~~l~~h~~~VtslafSpdg~~LAsG----s~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~ 728 (1155)
..+....++ .-++-+|++++|.+. ...++|.|+|.++...+.+... +-..++.++.|+
T Consensus 263 ~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~--~~~~~~~h~ef~--------------- 324 (369)
T PF02239_consen 263 KTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP--GPGKRVVHMEFN--------------- 324 (369)
T ss_dssp EEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH--HHT--EEEEEE----------------
T ss_pred EEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec--cCCCcEeccEEC---------------
Confidence 344444455 668889999999998 5568999999999877765432 222359999998
Q ss_pred CCCCCCCCCCcEEEEEeCCc--eEEEEECCCCceeeeee
Q 001109 729 DINSSNDTKKETLFFMTKDA--HIVVCDSTTGHILFSRS 765 (1155)
Q Consensus 729 ~~~~~~~pd~~~L~s~s~Dg--~I~vwd~~tG~~l~~~~ 765 (1155)
+||+.+..+..|+ .|.|+|..|.+.+...+
T Consensus 325 -------~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 325 -------PDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -------TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred -------CCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 8888777665554 59999999999998886
No 236
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=4.7e-08 Score=107.71 Aligned_cols=173 Identities=17% Similarity=0.190 Sum_probs=133.4
Q ss_pred cCcEEEEEECC--CcEEEEeCCCCCeeeeeeeCC---CcCccccCCCCCCeEEEEEecC--CCeEEEEeCCCeEEEEEec
Q 001109 550 VERLYIAGYRD--GSTRIWDATYPTLSLIHVFGS---ELPGIRTATESESVSALEFCSV--TLNLAIGSSSGLVWLYNLI 622 (1155)
Q Consensus 550 ~~~lLaTgs~D--gtVrlWD~~~~~l~~l~~l~~---~~~~i~~~gh~~~V~~lafspd--g~~Lasgs~dG~V~lwd~~ 622 (1155)
+..++|+|+.. ..+++||+.... .++..+- ..-++. -.-+++++.|-|. ...+|+++.-+.||+||..
T Consensus 160 ~p~Iva~GGke~~n~lkiwdle~~~--qiw~aKNvpnD~L~Lr---VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~ 234 (412)
T KOG3881|consen 160 DPYIVATGGKENINELKIWDLEQSK--QIWSAKNVPNDRLGLR---VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR 234 (412)
T ss_pred CCceEecCchhcccceeeeecccce--eeeeccCCCCccccce---eeeeeccceecCCCCCceEEEEecceeEEEecCc
Confidence 34578889998 889999998763 3333221 001111 1236678999988 8899999999999999998
Q ss_pred cCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCC
Q 001109 623 KSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSN 702 (1155)
Q Consensus 623 ~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~ 702 (1155)
.+.. ++..|.--..+|+++..-|+|+++.+|..-|.+..+|++++.++-.. +.+
T Consensus 235 ~qRR------------------------PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~--~kg 288 (412)
T KOG3881|consen 235 HQRR------------------------PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG--LKG 288 (412)
T ss_pred ccCc------------------------ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc--cCC
Confidence 6543 23445555778999999999999999999999999999998876532 567
Q ss_pred CCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeecccCCCceEE
Q 001109 703 SNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSIHHQESNAIY 775 (1155)
Q Consensus 703 h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~~~~~~al~ 775 (1155)
.++.|.++... |.+++|++++-|..|||+|..|.++|....+..+....+.
T Consensus 289 ~tGsirsih~h----------------------p~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~ 339 (412)
T KOG3881|consen 289 ITGSIRSIHCH----------------------PTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILL 339 (412)
T ss_pred ccCCcceEEEc----------------------CCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEe
Confidence 88899999887 7789999999999999999999888777655554444444
No 237
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.84 E-value=3.3e-07 Score=98.64 Aligned_cols=102 Identities=10% Similarity=0.113 Sum_probs=80.3
Q ss_pred CceEEEEcCCCC-EEEEEEcCCeEEEEccCCceEEEEcC-CCCCEEEEEEEcCCcEEEE-EecCCeEEEEECCCCceeee
Q 001109 44 TASILAFDHVQS-LLAIGTQDGRIKVIGGDNIEGLLVSP-KQLAFKHLEFLQNQGFLVS-ISSGNEIQLWDLEARRITST 120 (1155)
Q Consensus 44 ~vs~lafsp~g~-lLAsgs~DG~I~vw~~~~~~~~~~~~-~~~~V~~l~Fs~dg~~LvS-~s~Dg~I~vWDl~t~~~~~~ 120 (1155)
.|..+-+..|.. +|-++..|+.|.+|+..+.+...... .++++.+++|||||+.++. ..-|-.|.||.+.+.+....
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~ 129 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL 129 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe
Confidence 567788888775 56677889999999998887776553 4778999999999976655 45688999999998876543
Q ss_pred ecCCCceeEEEEecCCCEEEEEeCC
Q 001109 121 LPWESNITAFSVIFGTSYMYIGDEY 145 (1155)
Q Consensus 121 l~~~~~Vtsva~spd~~~l~~G~~d 145 (1155)
--....+..++|+|||+++++.+..
T Consensus 130 ~~pK~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 130 PHPKTNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred cccccCceeEEECCCCceeeeeecc
Confidence 3233667899999999999988754
No 238
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.80 E-value=4.1e-07 Score=108.84 Aligned_cols=118 Identities=14% Similarity=-0.009 Sum_probs=80.9
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcC---CeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEE-EecCC--eEEEEECC
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQD---GRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVS-ISSGN--EIQLWDLE 113 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~D---G~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS-~s~Dg--~I~vWDl~ 113 (1155)
.+...+...+|+|||++||.++.+ .+|++|+..+............+..+.|+|||..|+. .+.++ .|.+||+.
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence 344567888999999999988754 4899999876644333334455667899999987764 44443 58999998
Q ss_pred CCceeeeecCCCceeEEEEecCCCEEEEEeC-CCcEEEEEecCCC
Q 001109 114 ARRITSTLPWESNITAFSVIFGTSYMYIGDE-YGMVYVLKYDTEE 157 (1155)
Q Consensus 114 t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~-dG~V~vw~~d~~~ 157 (1155)
++................|+||+++|+..+. .|...||.++...
T Consensus 267 ~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 267 GKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred CCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 8765433333344557789999998876554 4554556666543
No 239
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=5.5e-07 Score=108.23 Aligned_cols=178 Identities=12% Similarity=0.014 Sum_probs=112.5
Q ss_pred CeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecC---CeEEEEECCCCceeeeecCCCceeEEEEecCCCEEE
Q 001109 64 GRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSG---NEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMY 140 (1155)
Q Consensus 64 G~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~D---g~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~ 140 (1155)
.+|.+||.++........+...+...+|+|||.+|+.++.+ ..|.+||+.+++........+...+.+|+|||+.|+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence 36888988765443333456678999999999999988743 469999999887543323345556889999999775
Q ss_pred -EEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccc
Q 001109 141 -IGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRS 219 (1155)
Q Consensus 141 -~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (1155)
+.+.+|.-.||.+|...++..+ +.. +...
T Consensus 264 ~~~s~~g~~~Iy~~d~~~g~~~~----lt~----------------------------------------------~~~~ 293 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLGSRQLTR----LTN----------------------------------------------HFGI 293 (433)
T ss_pred EEEeCCCCceEEEEECCCCCeEE----Ccc----------------------------------------------CCCC
Confidence 4566665444444554433210 000 0011
Q ss_pred cccceeeEEEEeecccccccccccEEEEEEc-CCe--EEEEEccCCeEEEEecccccccccccccCCCCCCCCCCccccc
Q 001109 220 KLRFFVEIRLLQFQKHVNSTLGFSQLLLVYA-NGL--IILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVS 296 (1155)
Q Consensus 220 v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~-dG~--I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1155)
... ..|+|++ ++|+.++. +|. |.++|+.+++......
T Consensus 294 ~~~-----~~~spDG--------~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~--------------------------- 333 (433)
T PRK04922 294 DTE-----PTWAPDG--------KSIYFTSDRGGRPQIYRVAASGGSAERLTF--------------------------- 333 (433)
T ss_pred ccc-----eEECCCC--------CEEEEEECCCCCceEEEEECCCCCeEEeec---------------------------
Confidence 123 7888874 45666654 444 6666776666543310
Q ss_pred ccccccCCccEEEEEecCCCeEEEEEcCC---cEEEEEcCCCC
Q 001109 297 DNEQVEKEISSLCWASNDGSVLAVGYVDG---DILLWNLRAAA 336 (1155)
Q Consensus 297 ~~~~~~~~V~sl~~s~pdG~~lasg~~DG---~I~lWd~~s~~ 336 (1155)
+.......+|+ |||+.|+..+.++ .|.+||+.++.
T Consensus 334 ----~g~~~~~~~~S-pDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 334 ----QGNYNARASVS-PDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred ----CCCCccCEEEC-CCCCEEEEEECCCCceeEEEEECCCCC
Confidence 01224468999 9999999876543 59999987764
No 240
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.74 E-value=7.1e-07 Score=96.30 Aligned_cols=180 Identities=14% Similarity=0.218 Sum_probs=120.9
Q ss_pred CeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECC-CCceeeeecCCC-ceeEEEEecCC--CEE
Q 001109 64 GRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLE-ARRITSTLPWES-NITAFSVIFGT--SYM 139 (1155)
Q Consensus 64 G~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~-t~~~~~~l~~~~-~Vtsva~spd~--~~l 139 (1155)
..|.|||-.....+..+.-..+|+++.+.++. ||.+ .++.|.||... .-+.++.+.... +=..++..|.. .+|
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence 47889996655555555556799999999882 4444 47899999987 556666654321 11234444443 344
Q ss_pred EE-EeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCccccccc
Q 001109 140 YI-GDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIR 218 (1155)
Q Consensus 140 ~~-G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (1155)
|. |-.-|.|+|.++...... .|..|++ |.+
T Consensus 152 afPg~k~GqvQi~dL~~~~~~---~p~~I~A----------------------------------------------H~s 182 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPN---APSIINA----------------------------------------------HDS 182 (346)
T ss_pred EcCCCccceEEEEEhhhcCcC---CceEEEc----------------------------------------------ccC
Confidence 33 556788888765442210 1122222 234
Q ss_pred ccccceeeEEEEeecccccccccccEEEEEEcCCe-EEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccc
Q 001109 219 SKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGL-IILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSD 297 (1155)
Q Consensus 219 ~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~-I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1155)
.+-+ ++++-+ | .++|+|+..|+ |||||..+|..+.. ++. |-
T Consensus 183 ~Iac-----v~Ln~~--G------t~vATaStkGTLIRIFdt~~g~~l~E-------~RR----------G~-------- 224 (346)
T KOG2111|consen 183 DIAC-----VALNLQ--G------TLVATASTKGTLIRIFDTEDGTLLQE-------LRR----------GV-------- 224 (346)
T ss_pred ceeE-----EEEcCC--c------cEEEEeccCcEEEEEEEcCCCcEeee-------eec----------CC--------
Confidence 4434 777765 5 78999999995 78999999998764 111 00
Q ss_pred cccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCC
Q 001109 298 NEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAAS 337 (1155)
Q Consensus 298 ~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~ 337 (1155)
....|.+++|+ ||+++||+++.-|+|.++.+.....
T Consensus 225 ---d~A~iy~iaFS-p~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 225 ---DRADIYCIAFS-PNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred ---chheEEEEEeC-CCccEEEEEcCCCeEEEEEeecCCC
Confidence 25679999999 9999999999999999999987543
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.73 E-value=1.1e-06 Score=105.69 Aligned_cols=119 Identities=14% Similarity=0.021 Sum_probs=81.7
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcC---CeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEE-EEecCC--eEEEEECC
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQD---GRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLV-SISSGN--EIQLWDLE 113 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~D---G~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~Lv-S~s~Dg--~I~vWDl~ 113 (1155)
.+...+...+|+|||+.||..+.+ ..|.+|+..+.+........+.+....|+|||.+|+ +.+.++ .|.+||++
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence 445668889999999999887644 368889987665433222334556789999998887 444444 68888999
Q ss_pred CCceeeeecCCCceeEEEEecCCCEEEEEe-CCCcEEEEEecCCCc
Q 001109 114 ARRITSTLPWESNITAFSVIFGTSYMYIGD-EYGMVYVLKYDTEEG 158 (1155)
Q Consensus 114 t~~~~~~l~~~~~Vtsva~spd~~~l~~G~-~dG~V~vw~~d~~~~ 158 (1155)
++....-.......+...|+|||+.|+..+ .+|...+|.++...+
T Consensus 276 ~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 276 SRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 887543222334567788999999876554 456656666665443
No 242
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.72 E-value=1.7e-07 Score=106.79 Aligned_cols=185 Identities=13% Similarity=0.121 Sum_probs=121.1
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCC-eEEEEeCCCeEEEEEeccCccccce-
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTL-NLAIGSSSGLVWLYNLIKSSNEETL- 630 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~-~Lasgs~dG~V~lwd~~~~~~~~~~- 630 (1155)
-++.|-.-|.|.+.|-.......++..+.. -....|+|+.|-|.+. .++++..+|.+++|+..-.-....-
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~-------i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~ 259 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERL-------INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS 259 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhccc-------ccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc
Confidence 455566667777766433221111111111 1124899999999654 4567788999999987432111000
Q ss_pred -eeeccC-CceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCee
Q 001109 631 -NLVTET-GKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVL 708 (1155)
Q Consensus 631 -~~v~~~-~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~ 708 (1155)
...... ...+.......--.++..+.--.+.|...+|||||++||+-+.||.+||+|..+..++-.+. ..-++..
T Consensus 260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk---SYFGGLL 336 (636)
T KOG2394|consen 260 YQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK---SYFGGLL 336 (636)
T ss_pred ccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH---hhccceE
Confidence 011110 01122111111112333344446689999999999999999999999999999877654332 3557899
Q ss_pred EEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeecccC
Q 001109 709 YLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSIHHQ 769 (1155)
Q Consensus 709 slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~~~ 769 (1155)
+++|| |||++|++|++|--|.||....++++....-|.-
T Consensus 337 CvcWS----------------------PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkS 375 (636)
T KOG2394|consen 337 CVCWS----------------------PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKS 375 (636)
T ss_pred EEEEc----------------------CCccEEEecCCcceEEEEEeccceEEEecccccc
Confidence 99999 9999999999999999999999999999866654
No 243
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=8.9e-07 Score=97.86 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=98.8
Q ss_pred CcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccce
Q 001109 551 ERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETL 630 (1155)
Q Consensus 551 ~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~ 630 (1155)
...+||+..-+.||+||...++ +|+..+. -...+|+++...|++.++.+|..-|.+..||+......
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qR-RPV~~fd---------~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~--- 282 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQR-RPVAQFD---------FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL--- 282 (412)
T ss_pred CceEEEEecceeEEEecCcccC-cceeEec---------cccCcceeeeecCCCcEEEEecccchhheecccCceee---
Confidence 5689999999999999998654 4444332 12348999999999999999999999999999886431
Q ss_pred eeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEE
Q 001109 631 NLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYL 710 (1155)
Q Consensus 631 ~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~sl 710 (1155)
...|.+-.|.|++|.+.|.+++||+++.|..|||+|+++...++..-+ .+.++.+
T Consensus 283 ---------------------g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv----Ks~lt~i 337 (412)
T KOG3881|consen 283 ---------------------GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV----KSRLTFI 337 (412)
T ss_pred ---------------------ccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh----hccccEE
Confidence 123577899999999999999999999999999999999777765422 3445555
Q ss_pred EEe
Q 001109 711 AVK 713 (1155)
Q Consensus 711 afs 713 (1155)
-+.
T Consensus 338 l~~ 340 (412)
T KOG3881|consen 338 LLR 340 (412)
T ss_pred Eec
Confidence 554
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.71 E-value=3.2e-06 Score=101.14 Aligned_cols=176 Identities=14% Similarity=0.090 Sum_probs=113.1
Q ss_pred eEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecC---CeEEEEECCCCceeeeecCCCceeEEEEecCCCEEE-
Q 001109 65 RIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSG---NEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMY- 140 (1155)
Q Consensus 65 ~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~D---g~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~- 140 (1155)
.|.+++.++........+...+....|+|||++|+.++.+ ..|.+||+.+++........+.+.+++|+||++.|+
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~ 250 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAV 250 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 5777777654332222344578889999999999887644 479999999886554434445677899999999776
Q ss_pred EEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCccccccccc
Q 001109 141 IGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSK 220 (1155)
Q Consensus 141 ~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 220 (1155)
+.+.+|...+|.++...+... .+.. .....
T Consensus 251 ~~~~~~~~~i~~~d~~~~~~~----~l~~----------------------------------------------~~~~~ 280 (417)
T TIGR02800 251 SLSKDGNPDIYVMDLDGKQLT----RLTN----------------------------------------------GPGID 280 (417)
T ss_pred EECCCCCccEEEEECCCCCEE----ECCC----------------------------------------------CCCCC
Confidence 455566544555555433221 0000 01111
Q ss_pred ccceeeEEEEeecccccccccccEEEEEEcC-C--eEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccc
Q 001109 221 LRFFVEIRLLQFQKHVNSTLGFSQLLLVYAN-G--LIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSD 297 (1155)
Q Consensus 221 ~~~~v~~v~~~p~~~~~~~~~~~~llsg~~d-G--~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1155)
.. ..|+|++ ++|+.++.. | .|.+||+.+++......
T Consensus 281 ~~-----~~~s~dg--------~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~---------------------------- 319 (417)
T TIGR02800 281 TE-----PSWSPDG--------KSIAFTSDRGGSPQIYMMDADGGEVRRLTF---------------------------- 319 (417)
T ss_pred CC-----EEECCCC--------CEEEEEECCCCCceEEEEECCCCCEEEeec----------------------------
Confidence 22 5778863 456665543 3 67888887776543311
Q ss_pred cccccCCccEEEEEecCCCeEEEEEcCC---cEEEEEcCCC
Q 001109 298 NEQVEKEISSLCWASNDGSVLAVGYVDG---DILLWNLRAA 335 (1155)
Q Consensus 298 ~~~~~~~V~sl~~s~pdG~~lasg~~DG---~I~lWd~~s~ 335 (1155)
+...+....|+ |||++|+.++.++ .|.+||+.++
T Consensus 320 ---~~~~~~~~~~s-pdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 320 ---RGGYNASPSWS-PDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred ---CCCCccCeEEC-CCCCEEEEEEccCCceEEEEEeCCCC
Confidence 12345678898 9999999998876 7888988764
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=1.4e-06 Score=105.09 Aligned_cols=119 Identities=15% Similarity=0.008 Sum_probs=81.0
Q ss_pred CCCCceEEEEcCCCCEEEEEEcC-C--eEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEE-EecCCe--EEEEECCC
Q 001109 41 IPSTASILAFDHVQSLLAIGTQD-G--RIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVS-ISSGNE--IQLWDLEA 114 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs~D-G--~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS-~s~Dg~--I~vWDl~t 114 (1155)
....+...+|||||+.||..+.+ | .|.+|+..+.+...............|+|||..|+. .+.++. |.+||+++
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t 295 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT 295 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC
Confidence 34567789999999999887643 3 588888776554322222334457899999998875 455554 88889988
Q ss_pred CceeeeecCCCceeEEEEecCCCEEEEEe-CCCcEEEEEecCCCce
Q 001109 115 RRITSTLPWESNITAFSVIFGTSYMYIGD-EYGMVYVLKYDTEEGK 159 (1155)
Q Consensus 115 ~~~~~~l~~~~~Vtsva~spd~~~l~~G~-~dG~V~vw~~d~~~~~ 159 (1155)
++..............+|+|||++|+..+ .+|...+|.++...++
T Consensus 296 g~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 296 KALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred CCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 86543223334567889999999886654 4566777777765443
No 246
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=6.7e-06 Score=94.28 Aligned_cols=104 Identities=15% Similarity=0.339 Sum_probs=81.8
Q ss_pred ceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEec-----------CCeEEEEECC
Q 001109 45 ASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISS-----------GNEIQLWDLE 113 (1155)
Q Consensus 45 vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~-----------Dg~I~vWDl~ 113 (1155)
-+.+.|||-|.||++=..-| |.+|+..+...+..+.|. .|+.+.|||+..|||+-+. ...+.|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 46789999999999988877 889999887666666665 4999999999999999652 2579999999
Q ss_pred CCceeeeecC---CC-ceeEEEEecCCCEEEEEeCCCcEEEE
Q 001109 114 ARRITSTLPW---ES-NITAFSVIFGTSYMYIGDEYGMVYVL 151 (1155)
Q Consensus 114 t~~~~~~l~~---~~-~Vtsva~spd~~~l~~G~~dG~V~vw 151 (1155)
+|.+..++.. .. .-.-+.+|.|++|+|--+.++ |.|+
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-isIy 331 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-ISIY 331 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEeccce-EEEE
Confidence 9998887764 22 223468899999998776654 4454
No 247
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.68 E-value=6.5e-08 Score=122.49 Aligned_cols=173 Identities=13% Similarity=0.160 Sum_probs=127.1
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
.-+|.-.+++||++||.||+|....++ .++.+.+ .|. ..|+.+.|+.+|....++..||.+-+|......
T Consensus 2215 ~sHp~~~~Yltgs~dgsv~~~~w~~~~--~v~~~rt-------~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~ 2284 (2439)
T KOG1064|consen 2215 TSHPSDPYYLTGSQDGSVRMFEWGHGQ--QVVCFRT-------AGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP 2284 (2439)
T ss_pred cCCCCCceEEecCCCceEEEEeccCCC--eEEEeec-------cCc-chhhhhhhcccCCceeeeccCCceeecccCCcc
Confidence 456777799999999999999988776 3444432 244 689999999999999999999999999987543
Q ss_pred cc---------cceeeec---------cCCceEEEecC--CCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 001109 626 NE---------ETLNLVT---------ETGKEVHILPG--GDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAM 685 (1155)
Q Consensus 626 ~~---------~~~~~v~---------~~~~~~~~~~~--~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~l 685 (1155)
.. ..+.|+. ..++.+.++.. ..+.-++. ..|.+.+|++++-|.-++|.+|+.+|.|+|
T Consensus 2285 ~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred eeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence 21 2334442 11222322222 11122223 679999999999999999999999999999
Q ss_pred EecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeee
Q 001109 686 LDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRS 765 (1155)
Q Consensus 686 WDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~ 765 (1155)
||++..++.++.+ . + .....+++|+..|+|+||++..-..|.+++
T Consensus 2363 ~D~rqrql~h~~~--------~----~-----------------------~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2363 FDIRQRQLRHTFQ--------A----L-----------------------DTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred eehHHHHHHHHhh--------h----h-----------------------hhhheeeccCcccceEEEEccccchhhcCc
Confidence 9999877654432 2 1 124568999999999999998877776663
No 248
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.67 E-value=2.3e-07 Score=99.92 Aligned_cols=156 Identities=10% Similarity=0.039 Sum_probs=122.8
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCC-eeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccC
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPT-LSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKS 624 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~-l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~ 624 (1155)
++++++..+|.+-....|.|+...... ..+..+++ .|...|+.|+|+|.+..|++++.|..-+||....+
T Consensus 17 Awn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls---------~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 17 AWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS---------EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eecCCCceEEeccCCceEEEEEecCCCCceeceehh---------hhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 788999999999999999999877665 23333333 68889999999999999999999999999998432
Q ss_pred ccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEE-EEeccCCCC
Q 001109 625 SNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVL-FITDSLSNS 703 (1155)
Q Consensus 625 ~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l-~~~~~~~~h 703 (1155)
.. ..+..++..|+..+++|.|+|.+..+|+|+....|.||=++...-= ...++-..+
T Consensus 88 ~~----------------------WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPi 145 (361)
T KOG1523|consen 88 GT----------------------WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPI 145 (361)
T ss_pred Ce----------------------eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcc
Confidence 10 1223456779999999999999999999999999999988763221 011122346
Q ss_pred CCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEE
Q 001109 704 NSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCD 754 (1155)
Q Consensus 704 ~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd 754 (1155)
.+.|++|.|. |..-+|+.|+.|+..+|+.
T Consensus 146 rStv~sldWh----------------------pnnVLlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 146 RSTVTSLDWH----------------------PNNVLLAAGSTDGKCRVFS 174 (361)
T ss_pred ccceeeeecc----------------------CCcceecccccCcceeEEE
Confidence 7889999998 6677899999999988875
No 249
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.65 E-value=0.0016 Score=84.68 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=53.2
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEE----ccCC--ceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEE
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVI----GGDN--IEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLW 110 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw----~~~~--~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vW 110 (1155)
+.|-.+.|-++..-|..+..+|.|.++ +... .+++-.. ...|.+.+||||+..|+-++.++++.+-
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v--d~GI~a~~WSPD~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV--DSGILAASWSPDEELLALVTGEGNLLLM 147 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE--cCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence 568888899999999999999999998 4443 3444433 4579999999999999999888887764
No 250
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=5e-07 Score=103.65 Aligned_cols=196 Identities=12% Similarity=0.185 Sum_probs=141.8
Q ss_pred eEEEEc-CCCCEEEEEEcCCeEEEEccCCceEEEEcCC-CCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecC
Q 001109 46 SILAFD-HVQSLLAIGTQDGRIKVIGGDNIEGLLVSPK-QLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPW 123 (1155)
Q Consensus 46 s~lafs-p~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~-~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~ 123 (1155)
..++|+ |.-.++.+|+. ..|+-++...+..+..+.. .+.+.+|..++-.+.|++|+.+|.|..||.+++..+.++..
T Consensus 137 RDm~y~~~scDly~~gsg-~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSG-SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred ccccccCCCccEEEeecC-cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeec
Confidence 345565 34456666655 4687888888777755543 47899999999888888888999999999999987777653
Q ss_pred CC------------ceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccc
Q 001109 124 ES------------NITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREK 191 (1155)
Q Consensus 124 ~~------------~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~ 191 (1155)
.. .|+++.|+.+|-.+++|+.+|.|.++ |.+..+ |+.+..+-
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iy--DLRa~~----pl~~kdh~-------------------- 269 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIY--DLRASK----PLLVKDHG-------------------- 269 (703)
T ss_pred ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEE--EcccCC----ceeecccC--------------------
Confidence 32 39999999999999999999988665 544322 33333220
Q ss_pred cccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccc
Q 001109 192 GKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSK 271 (1155)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~ 271 (1155)
...++.. +.|.+.+.. +.|++ .....++|||-.+|+......
T Consensus 270 ------------------------~e~pi~~-----l~~~~~~~q------~~v~S-~Dk~~~kiWd~~~Gk~~asiE-- 311 (703)
T KOG2321|consen 270 ------------------------YELPIKK-----LDWQDTDQQ------NKVVS-MDKRILKIWDECTGKPMASIE-- 311 (703)
T ss_pred ------------------------Cccceee-----ecccccCCC------ceEEe-cchHHhhhcccccCCceeecc--
Confidence 0233444 888776443 44544 455789999999998876411
Q ss_pred ccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCC
Q 001109 272 DLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAA 336 (1155)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~ 336 (1155)
....+..+|+- |++..+.+|-.++.+..+=++..-
T Consensus 312 -----------------------------pt~~lND~C~~-p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 312 -----------------------------PTSDLNDFCFV-PGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred -----------------------------ccCCcCceeee-cCCceEEEecCCCcceeEEccccC
Confidence 24558899999 999999999999988888777643
No 251
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=9.2e-07 Score=96.61 Aligned_cols=184 Identities=13% Similarity=0.127 Sum_probs=126.5
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCCce-EEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCc----e
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDNIE-GLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARR----I 117 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~-~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~----~ 117 (1155)
..+..+|+++.-.-+|+++.|-.|++|+..... ..+++..+..|++++|-|.+..-++++..+-|-+|.....- .
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN 178 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc
Confidence 346778999977779999999999999876533 33455557789999999987665555556668999875321 1
Q ss_pred ----------eeeecCCCceeEEEEecCCCEEEEEeC-CCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccc
Q 001109 118 ----------TSTLPWESNITAFSVIFGTSYMYIGDE-YGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNH 186 (1155)
Q Consensus 118 ----------~~~l~~~~~Vtsva~spd~~~l~~G~~-dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~ 186 (1155)
+..-++|..|+++.+.+||..+++++- +..|.||+.|.+.+... . +.
T Consensus 179 ~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL----~-~~----------------- 236 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL----I-PK----------------- 236 (445)
T ss_pred cccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc----c-cc-----------------
Confidence 111234578999999999999998764 56788887776542211 0 00
Q ss_pred ccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccC-CeEE
Q 001109 187 IQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSE-DKVV 265 (1155)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~-~~~~ 265 (1155)
. .+. ++-+.|+|+. +.|+++.-|+..+||+... ....
T Consensus 237 ----------------------g-------lgg-----~slLkwSPdg--------d~lfaAt~davfrlw~e~q~wt~e 274 (445)
T KOG2139|consen 237 ----------------------G-------LGG-----FSLLKWSPDG--------DVLFAATCDAVFRLWQENQSWTKE 274 (445)
T ss_pred ----------------------C-------CCc-----eeeEEEcCCC--------CEEEEecccceeeeehhcccceec
Confidence 0 111 2228899985 4699999999999996432 2222
Q ss_pred EEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEE
Q 001109 266 LVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGY 322 (1155)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~ 322 (1155)
+-.. ..+.|...||+ |+|++|+-..
T Consensus 275 rw~l-------------------------------gsgrvqtacWs-pcGsfLLf~~ 299 (445)
T KOG2139|consen 275 RWIL-------------------------------GSGRVQTACWS-PCGSFLLFAC 299 (445)
T ss_pred ceec-------------------------------cCCceeeeeec-CCCCEEEEEE
Confidence 1100 14579999999 9999887654
No 252
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=1.2e-05 Score=95.34 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=78.1
Q ss_pred eEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEe-------
Q 001109 606 NLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGF------- 678 (1155)
Q Consensus 606 ~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs------- 678 (1155)
++|+|+..|+|.++|+.++... ..|.-|++.|.++.|--..+++-.++
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~-------------------------~~fsvht~~VkgleW~g~sslvSfsys~~n~~s 493 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVA-------------------------ASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSAS 493 (1062)
T ss_pred eEEeecCCceEEEEEecchhhh-------------------------hhhcccccceeeeeeccceeEEEeeeccccccc
Confidence 4789999999999999886431 34567888888888877765544333
Q ss_pred --CCCcEEEEecCCccEEEEeccC-CCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC
Q 001109 679 --ECSQVAMLDISTFSVLFITDSL-SNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 679 --~Dg~V~lWDi~~~~~l~~~~~~-~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
.-+.+.|-|+++|.... ++.+ ..-.+||..+..| .-|++|+..=.|..+.+||+
T Consensus 494 g~vrN~l~vtdLrtGlsk~-fR~l~~~despI~~irvS----------------------~~~~yLai~Fr~~plEiwd~ 550 (1062)
T KOG1912|consen 494 GGVRNDLVVTDLRTGLSKR-FRGLQKPDESPIRAIRVS----------------------SSGRYLAILFRREPLEIWDL 550 (1062)
T ss_pred cceeeeEEEEEcccccccc-cccCCCCCcCcceeeeec----------------------ccCceEEEEecccchHHHhh
Confidence 23456788888875432 2221 2356789998888 45889999999999999999
Q ss_pred CCCcee
Q 001109 756 TTGHIL 761 (1155)
Q Consensus 756 ~tG~~l 761 (1155)
.|-.++
T Consensus 551 kt~~~l 556 (1062)
T KOG1912|consen 551 KTLRML 556 (1062)
T ss_pred ccchHH
Confidence 765543
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.59 E-value=5.5e-06 Score=99.10 Aligned_cols=199 Identities=15% Similarity=0.078 Sum_probs=118.9
Q ss_pred CCceEEEEcCCCCEEE---EEEcCC--eEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEec-CC----eEEEEEC
Q 001109 43 STASILAFDHVQSLLA---IGTQDG--RIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISS-GN----EIQLWDL 112 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLA---sgs~DG--~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~-Dg----~I~vWDl 112 (1155)
+.+..-+|||||+.++ +...+| .|.+.+..+.+........+.....+|+|||.+|+..+. +| .+.+||+
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~ 264 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSL 264 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeec
Confidence 3456679999997533 444444 566667766543332223344557899999988887653 22 3455887
Q ss_pred CCC---ceeeeecCC-CceeEEEEecCCCEEEEEe-CCCcEEEEEecCCC--ceeeccceeccCCceeeeceeEeeEecc
Q 001109 113 EAR---RITSTLPWE-SNITAFSVIFGTSYMYIGD-EYGMVYVLKYDTEE--GKLIHSPYYVPKDVIEVFNHLLLEFCPN 185 (1155)
Q Consensus 113 ~t~---~~~~~l~~~-~~Vtsva~spd~~~l~~G~-~dG~V~vw~~d~~~--~~l~~~~~~i~~~~~~~~~~~~l~~~p~ 185 (1155)
.++ ......... +..+..+|+|||+.|+..+ .+|..++|.++... +... .+..
T Consensus 265 ~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~----~lt~---------------- 324 (428)
T PRK01029 265 ETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR----LLTK---------------- 324 (428)
T ss_pred ccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE----Eecc----------------
Confidence 753 222222222 3456789999999777654 56766777665431 1100 0000
Q ss_pred cccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcC---CeEEEEEccCC
Q 001109 186 HIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYAN---GLIILWDVSED 262 (1155)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~d---G~I~lWd~~~~ 262 (1155)
....+.. ..|+|++ ++|+....+ ..|.+||+.++
T Consensus 325 ------------------------------~~~~~~~-----p~wSPDG--------~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 325 ------------------------------KYRNSSC-----PAWSPDG--------KKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred ------------------------------CCCCccc-----eeECCCC--------CEEEEEEcCCCCcEEEEEECCCC
Confidence 0111223 7789984 456655443 47899999988
Q ss_pred eEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEc---CCcEEEEEcCCCC
Q 001109 263 KVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYV---DGDILLWNLRAAA 336 (1155)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~---DG~I~lWd~~s~~ 336 (1155)
+...... ....+.+..|+ |||+.|+.... .+.|++||+.++.
T Consensus 362 ~~~~Lt~-------------------------------~~~~~~~p~wS-pDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 362 RDYQLTT-------------------------------SPENKESPSWA-IDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred CeEEccC-------------------------------CCCCccceEEC-CCCCEEEEEECCCCCceEEEEECCCCC
Confidence 7654311 01235678999 99998886543 3468888887653
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.58 E-value=3.8e-06 Score=97.58 Aligned_cols=126 Identities=16% Similarity=0.117 Sum_probs=104.7
Q ss_pred cCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccc
Q 001109 550 VERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEET 629 (1155)
Q Consensus 550 ~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~ 629 (1155)
+-.+++=|...|.|-++++..+.+. +.+. .+.|.++|+++..+.+-..|-+++.|+.|..|++.....
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it--~~~s-------t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~--- 136 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEIT--AKLS-------TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI--- 136 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEE--EEEe-------cCCCCCcceeeecccccCceEecCCceeEEEEeccccee---
Confidence 3347888999999999999988743 4443 247889999999999999999999999999999987432
Q ss_pred eeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeE
Q 001109 630 LNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLY 709 (1155)
Q Consensus 630 ~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~s 709 (1155)
+..+...+..+.+++++|||+.|++|+ ++|++||++++.++.+ +.||.++|.+
T Consensus 137 ----------------------~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~---ftgh~s~v~t 189 (541)
T KOG4547|consen 137 ----------------------IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVIT---FTGHGSPVRT 189 (541)
T ss_pred ----------------------eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEE---ecCCCcceEE
Confidence 134456677899999999999999987 6799999999998865 4689999999
Q ss_pred EEEee
Q 001109 710 LAVKS 714 (1155)
Q Consensus 710 lafs~ 714 (1155)
++|..
T Consensus 190 ~~f~~ 194 (541)
T KOG4547|consen 190 LSFTT 194 (541)
T ss_pred EEEEE
Confidence 99974
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.58 E-value=1.2e-05 Score=97.08 Aligned_cols=95 Identities=9% Similarity=-0.007 Sum_probs=65.2
Q ss_pred eEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecC---CeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEE
Q 001109 65 RIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSG---NEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYI 141 (1155)
Q Consensus 65 ~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~D---g~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~ 141 (1155)
+|.++|.++........+...+....|+|||++|+.++.+ ..|.+||+.+++........+...+.+|+|||+.|+.
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~ 278 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLAL 278 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEE
Confidence 6666776665333223345688899999999998877643 3688999998865332223344567899999997764
Q ss_pred -EeCCCcEEEEEecCCCce
Q 001109 142 -GDEYGMVYVLKYDTEEGK 159 (1155)
Q Consensus 142 -G~~dG~V~vw~~d~~~~~ 159 (1155)
.+.+|...||.+|...++
T Consensus 279 ~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 279 VLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred EEeCCCCeEEEEEECCCCC
Confidence 677887677777765543
No 256
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.56 E-value=8.1e-07 Score=98.78 Aligned_cols=162 Identities=12% Similarity=0.086 Sum_probs=117.0
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCC--eeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEecc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPT--LSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIK 623 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~--l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~ 623 (1155)
..++.++++|.+-.++...+.+..... ..++...- -...-+++.|..+.....++..-|.++-+++-.
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~----------v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC----------VPKRPTAISFIREDTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee----------cccCcceeeeeeccceEEEEeecCCceeeeeec
Confidence 567888888888777776666654332 11111110 012446777777777777777777776666544
Q ss_pred CccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCC
Q 001109 624 SSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNS 703 (1155)
Q Consensus 624 ~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h 703 (1155)
-.. + +-...-||-+.++.|++|||++++.+++.|..|+|-.+.....+... .-||
T Consensus 139 ~~~---------------------~--~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf--clGH 193 (390)
T KOG3914|consen 139 ADS---------------------G--RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF--CLGH 193 (390)
T ss_pred ccc---------------------c--CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh--cccc
Confidence 110 0 01233589999999999999999999999999999988876666543 3589
Q ss_pred CCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeee
Q 001109 704 NSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRS 765 (1155)
Q Consensus 704 ~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~ 765 (1155)
..-|..++.. +++.|+||+-|++|++||..+|+++.++.
T Consensus 194 ~eFVS~isl~-----------------------~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 194 KEFVSTISLT-----------------------DNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred Hhheeeeeec-----------------------cCceeeecCCCCcEEEEecccCCcccccc
Confidence 9999999885 46679999999999999999999997774
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.56 E-value=2.8e-06 Score=98.75 Aligned_cols=173 Identities=15% Similarity=0.116 Sum_probs=128.3
Q ss_pred CcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEE--------------------ecCCCeEE
Q 001109 549 LVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEF--------------------CSVTLNLA 608 (1155)
Q Consensus 549 ~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~laf--------------------spdg~~La 608 (1155)
|...++|....||.+|+||...+++..-+.-..+.. +..+++.| +-|..++|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s--------~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lv 74 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLS--------GTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLV 74 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhcc--------CcceeEEEEEEeccchHHHHhHHHHhhccCCceEEE
Confidence 334578888899999999998887543221111111 11111111 23455678
Q ss_pred EEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEec
Q 001109 609 IGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDI 688 (1155)
Q Consensus 609 sgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi 688 (1155)
-|...|.|.+|++..+... +...-..|.+.|+++.++.+-..|-+++.|+.|..|+.
T Consensus 75 lgt~~g~v~~ys~~~g~it-----------------------~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~ 131 (541)
T KOG4547|consen 75 LGTPQGSVLLYSVAGGEIT-----------------------AKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILE 131 (541)
T ss_pred eecCCccEEEEEecCCeEE-----------------------EEEecCCCCCcceeeecccccCceEecCCceeEEEEec
Confidence 8888889999988775321 11111369999999999999999999999999999999
Q ss_pred CCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeeccc
Q 001109 689 STFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSIHH 768 (1155)
Q Consensus 689 ~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~~ 768 (1155)
......+... +...-+.+++.+ |||.+|++|+ +.|++||.++++++-.++.|+
T Consensus 132 ~~~~~~~~~~---~~~~~~~sl~is----------------------~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~ 184 (541)
T KOG4547|consen 132 KEKVIIRIWK---EQKPLVSSLCIS----------------------PDGKILLTAS--RQIKVLDIETKEVVITFTGHG 184 (541)
T ss_pred ccceeeeeec---cCCCccceEEEc----------------------CCCCEEEecc--ceEEEEEccCceEEEEecCCC
Confidence 9987766543 367778999998 8999999887 579999999999999999998
Q ss_pred CCCceEEEEEE
Q 001109 769 QESNAIYMCII 779 (1155)
Q Consensus 769 ~~~~al~~~~l 779 (1155)
-|.+-+++-.+
T Consensus 185 s~v~t~~f~~~ 195 (541)
T KOG4547|consen 185 SPVRTLSFTTL 195 (541)
T ss_pred cceEEEEEEEe
Confidence 88887777665
No 258
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.55 E-value=1.6e-07 Score=105.34 Aligned_cols=169 Identities=15% Similarity=0.104 Sum_probs=117.8
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccc-------------------------cC--CCCCCeEEE
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIR-------------------------TA--TESESVSAL 598 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~-------------------------~~--gh~~~V~~l 598 (1155)
.++.+|+.|+-|+.-|.|-.+|..+..|..-..+...+.++. +. ....+|..|
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~rL 215 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVARL 215 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchhhh
Confidence 678899999999999999999998887542211111110000 00 011244455
Q ss_pred EEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEe
Q 001109 599 EFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGF 678 (1155)
Q Consensus 599 afspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs 678 (1155)
.|-|.--+||+++..|.++--|+..+.. +..+..-.+.+..++-+|-...+-+|.
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS~Gkl-------------------------Va~~~t~~G~~~vm~qNP~NaVih~Gh 270 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVSTGKL-------------------------VASIRTGAGRTDVMKQNPYNAVIHLGH 270 (545)
T ss_pred cccchhheeeecccCCceEEEeechhhh-------------------------hHHHHccCCccchhhcCCccceEEEcC
Confidence 5555444455555555555555444322 122344567888899999999999999
Q ss_pred CCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCC
Q 001109 679 ECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTG 758 (1155)
Q Consensus 679 ~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG 758 (1155)
.+|+|.+|.......|..+.| |.++|.++++. ++|+++++++.|..++|||+..-
T Consensus 271 snGtVSlWSP~skePLvKiLc---H~g~V~siAv~----------------------~~G~YMaTtG~Dr~~kIWDlR~~ 325 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEPLVKILC---HRGPVSSIAVD----------------------RGGRYMATTGLDRKVKIWDLRNF 325 (545)
T ss_pred CCceEEecCCCCcchHHHHHh---cCCCcceEEEC----------------------CCCcEEeecccccceeEeeeccc
Confidence 999999999998887776666 99999999998 88999999999999999999765
Q ss_pred ceeeee
Q 001109 759 HILFSR 764 (1155)
Q Consensus 759 ~~l~~~ 764 (1155)
..+.+.
T Consensus 326 ~ql~t~ 331 (545)
T KOG1272|consen 326 YQLHTY 331 (545)
T ss_pred ccccee
Confidence 544443
No 259
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=2.1e-05 Score=94.58 Aligned_cols=94 Identities=11% Similarity=0.002 Sum_probs=65.3
Q ss_pred eEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecC---CeEEEEECCCCceeeeecCCCceeEEEEecCCCEEE-
Q 001109 65 RIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSG---NEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMY- 140 (1155)
Q Consensus 65 ~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~D---g~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~- 140 (1155)
+|.++|.++........+...+....|+|||.+|+.++.+ ..|.+||+.+++........+.+.+.+|+|||+.|+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence 4777777665443333455688999999999999877643 369999999887544333345566789999999876
Q ss_pred EEeCCCcEEEEEecCCCc
Q 001109 141 IGDEYGMVYVLKYDTEEG 158 (1155)
Q Consensus 141 ~G~~dG~V~vw~~d~~~~ 158 (1155)
+...+|...+|.+|...+
T Consensus 260 ~~~~~g~~~Iy~~d~~~~ 277 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASR 277 (430)
T ss_pred EEccCCCceEEEEECCCC
Confidence 455666555566666543
No 260
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.54 E-value=0.00014 Score=85.59 Aligned_cols=111 Identities=19% Similarity=0.221 Sum_probs=86.1
Q ss_pred CceEEEEcCCCCEEEEEEcCCeEEEEccCC----c--eEE----------EEcCCCCCEEEEEEEcCCcEEEEEecCCeE
Q 001109 44 TASILAFDHVQSLLAIGTQDGRIKVIGGDN----I--EGL----------LVSPKQLAFKHLEFLQNQGFLVSISSGNEI 107 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs~DG~I~vw~~~~----~--~~~----------~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I 107 (1155)
...|++|+....++|+|+.||-+||....+ . ..+ ..-+|.+.|..+.|+.+.+.|-+.+.+|-|
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI 95 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI 95 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence 467899999999999999999999974321 1 110 011467899999999998889999999999
Q ss_pred EEEECCCCceeeee---cCCCceeEEEEecCCCEEEEEeCCCcEEEEEec
Q 001109 108 QLWDLEARRITSTL---PWESNITAFSVIFGTSYMYIGDEYGMVYVLKYD 154 (1155)
Q Consensus 108 ~vWDl~t~~~~~~l---~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d 154 (1155)
.||=+-.|.-.-.. +..+.|.++++..||..+++..+||.|-|=.+|
T Consensus 96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 96 IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD 145 (1189)
T ss_pred EEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec
Confidence 99998777543222 234789999999999999999999988664444
No 261
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=0.00011 Score=85.14 Aligned_cols=82 Identities=9% Similarity=0.176 Sum_probs=55.1
Q ss_pred EEEEEcCCeEEEEccCCceEE-EEcCC---CCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCCCceeEEEE
Q 001109 57 LAIGTQDGRIKVIGGDNIEGL-LVSPK---QLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESNITAFSV 132 (1155)
Q Consensus 57 LAsgs~DG~I~vw~~~~~~~~-~~~~~---~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~ 132 (1155)
+|+=+.. .+.+|...+.... ..++. ..++...+|+++| +|++.+.+..++|.+..+...+.+.... .+.++.|
T Consensus 5 ~aVRsSe-~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G-~lfA~~~~~~v~i~~~~~~~~~lt~~~~-~~~~L~f 81 (566)
T KOG2315|consen 5 YAVRSSE-GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNG-RLFAYSDNQVVKVFEIATLKVVLCVELK-KTYDLLF 81 (566)
T ss_pred EEEEccc-eeEEeccCCccccccccccCCCCCcceeEEEcCCC-cEEEEEcCCeEEEEEccCCcEEEEeccc-eeeeeee
Confidence 4444443 3778876542221 11122 3356777888874 5777777889999999888655555444 8899999
Q ss_pred ecCCCEEEE
Q 001109 133 IFGTSYMYI 141 (1155)
Q Consensus 133 spd~~~l~~ 141 (1155)
+|-|.+|.+
T Consensus 82 SP~g~yL~T 90 (566)
T KOG2315|consen 82 SPKGNYLLT 90 (566)
T ss_pred ccccccccc
Confidence 999999864
No 262
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.52 E-value=1.4e-06 Score=106.62 Aligned_cols=155 Identities=15% Similarity=0.041 Sum_probs=115.1
Q ss_pred CcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcccc
Q 001109 549 LVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEE 628 (1155)
Q Consensus 549 ~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~ 628 (1155)
.....++.+..+..+-+||.....+. ..+... +...+ ....-+-++++.-++++|+.-|.|.+|++......
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~--~~i~~~-er~~l----~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p- 168 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVL--SKIQSD-ERCTL----YSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP- 168 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCcee--hhcCCC-ceEEE----EeEEEEeccCcEEEEEeccccccEEEEeccccCCc-
Confidence 44557788888999999998876521 111000 00000 12334457788889999999999999999832211
Q ss_pred ceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCee
Q 001109 629 TLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVL 708 (1155)
Q Consensus 629 ~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~ 708 (1155)
..+.+|.+.|.++.+|.||+++|+.|+|.++++|++++..++... .-||+.+|+
T Consensus 169 ------------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~--~fgHsaRvw 222 (967)
T KOG0974|consen 169 ------------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCT--GFGHSARVW 222 (967)
T ss_pred ------------------------ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcc--cccccceeE
Confidence 145799999999999999999999999999999999998877522 237999999
Q ss_pred EEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceee
Q 001109 709 YLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILF 762 (1155)
Q Consensus 709 slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~ 762 (1155)
.+.|. |. .|++++.|-+.++|+.+ |+.+.
T Consensus 223 ~~~~~----------------------~n--~i~t~gedctcrvW~~~-~~~l~ 251 (967)
T KOG0974|consen 223 ACCFL----------------------PN--RIITVGEDCTCRVWGVN-GTQLE 251 (967)
T ss_pred EEEec----------------------cc--eeEEeccceEEEEEecc-cceeh
Confidence 99998 33 79999999999999643 44443
No 263
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=2.1e-05 Score=90.93 Aligned_cols=238 Identities=12% Similarity=0.191 Sum_probs=142.7
Q ss_pred CceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEE-----EecCC-----eEEEEECC
Q 001109 44 TASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVS-----ISSGN-----EIQLWDLE 113 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS-----~s~Dg-----~I~vWDl~ 113 (1155)
..+..+||++|+++|.++. ..|+|++......+++.... .+..|.|+|-|.+|.+ ...++ .+++|+++
T Consensus 36 ~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred cceeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEeccc-eeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence 3677899999999998754 68999998777544444344 7899999999888876 22333 36799999
Q ss_pred CCceeeeecC-----------------------------------------CCceeEEEEecCCC--EEEE-----EeCC
Q 001109 114 ARRITSTLPW-----------------------------------------ESNITAFSVIFGTS--YMYI-----GDEY 145 (1155)
Q Consensus 114 t~~~~~~l~~-----------------------------------------~~~Vtsva~spd~~--~l~~-----G~~d 145 (1155)
++.....++. ...|+.++++|... .+|+ ++.-
T Consensus 114 t~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaP 193 (566)
T KOG2315|consen 114 TGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAP 193 (566)
T ss_pred cceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCC
Confidence 8643322210 02577888887744 3333 3344
Q ss_pred CcEEEEEecCCC--ceeeccceeccCCceeeeceeEeeEeccccccc-cccccccc---------ceeeecCCCCCCCcc
Q 001109 146 GMVYVLKYDTEE--GKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQRE-KGKAAFNA---------SLLFYCMPPDESGFI 213 (1155)
Q Consensus 146 G~V~vw~~d~~~--~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~ 213 (1155)
+.|++|.+..+. ..+..+.|. -+..|.+.|++.+...+ .....++. .++.+.+........
T Consensus 194 a~vri~~~~~~~~~~~~a~ksFF-------kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~ 266 (566)
T KOG2315|consen 194 ASVRIYKYPEEGQHQPVANKSFF-------KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP 266 (566)
T ss_pred cEEEEeccccccccchhhhcccc-------ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe
Confidence 567888776321 011111111 12234567777665443 11111111 333333321111111
Q ss_pred cccccccccceeeEEEEeecccccccccccEEE--EEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCC
Q 001109 214 DFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLL--LVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNL 291 (1155)
Q Consensus 214 ~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~ll--sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1155)
+...++|-+ +.|+|.+ +.++ -|+.--.+.|+|++ +.++...+
T Consensus 267 L~k~GPVhd-----v~W~~s~--------~EF~VvyGfMPAkvtifnlr-~~~v~df~---------------------- 310 (566)
T KOG2315|consen 267 LLKEGPVHD-----VTWSPSG--------REFAVVYGFMPAKVTIFNLR-GKPVFDFP---------------------- 310 (566)
T ss_pred cCCCCCceE-----EEECCCC--------CEEEEEEecccceEEEEcCC-CCEeEeCC----------------------
Confidence 222455555 9999985 3344 45556899999986 55554321
Q ss_pred cccccccccccCCccEEEEEecCCCeEEEEEc---CCcEEEEEcCCCCC
Q 001109 292 SETVSDNEQVEKEISSLCWASNDGSVLAVGYV---DGDILLWNLRAAAS 337 (1155)
Q Consensus 292 ~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~---DG~I~lWd~~s~~~ 337 (1155)
+++-.++-|+ |.|++|+.++= -|.|-|||+.+...
T Consensus 311 ----------egpRN~~~fn-p~g~ii~lAGFGNL~G~mEvwDv~n~K~ 348 (566)
T KOG2315|consen 311 ----------EGPRNTAFFN-PHGNIILLAGFGNLPGDMEVWDVPNRKL 348 (566)
T ss_pred ----------CCCccceEEC-CCCCEEEEeecCCCCCceEEEeccchhh
Confidence 4455688999 99999988764 48999999988543
No 264
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.50 E-value=0.0001 Score=85.85 Aligned_cols=210 Identities=17% Similarity=0.185 Sum_probs=128.9
Q ss_pred CCceEEEEcCCCCEEEEEEc----CCeEEEEccCC--ceE--EEEcC-CCCCEEEEEEEcCCcEEEEEe-cCCeEEEEEC
Q 001109 43 STASILAFDHVQSLLAIGTQ----DGRIKVIGGDN--IEG--LLVSP-KQLAFKHLEFLQNQGFLVSIS-SGNEIQLWDL 112 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~----DG~I~vw~~~~--~~~--~~~~~-~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vWDl 112 (1155)
...+.|+++|++++|-+... +|.|..|.... ... +-... ......+++++|++++|+++. .+|+|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 56778999999999888876 47888886543 222 22222 334567899999999999988 4899999999
Q ss_pred CC-Cceeee---ec-----------CCCceeEEEEecCCCEEEEEeCC-CcEEEEEecCCCceeeccceeccCCceeeec
Q 001109 113 EA-RRITST---LP-----------WESNITAFSVIFGTSYMYIGDEY-GMVYVLKYDTEEGKLIHSPYYVPKDVIEVFN 176 (1155)
Q Consensus 113 ~t-~~~~~~---l~-----------~~~~Vtsva~spd~~~l~~G~~d-G~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~ 176 (1155)
.. +.+... +. ......++.|+|+++++++.+-. ..|++++++...+++...
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~------------- 183 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPV------------- 183 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEE-------------
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEe-------------
Confidence 87 543322 21 12567899999999999987643 347777666654334310
Q ss_pred eeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEc-CCeEE
Q 001109 177 HLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYA-NGLII 255 (1155)
Q Consensus 177 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~-dG~I~ 255 (1155)
..+.+++. ....+ ++|+|+. +++++..+ ++.|.
T Consensus 184 ------------------------~~~~~~~G---------~GPRh-----~~f~pdg--------~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 184 ------------------------DSIKVPPG---------SGPRH-----LAFSPDG--------KYAYVVNELSNTVS 217 (345)
T ss_dssp ------------------------EEEECSTT---------SSEEE-----EEE-TTS--------SEEEEEETTTTEEE
T ss_pred ------------------------eccccccC---------CCCcE-----EEEcCCc--------CEEEEecCCCCcEE
Confidence 00011111 11223 8999974 45666655 68899
Q ss_pred EEEcc--CCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEE-cCCcEEEEEc
Q 001109 256 LWDVS--EDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGY-VDGDILLWNL 332 (1155)
Q Consensus 256 lWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~-~DG~I~lWd~ 332 (1155)
++++. ++.+..... +...+.... .......++++ |||++|.++. .++.|.++++
T Consensus 218 v~~~~~~~g~~~~~~~---------~~~~~~~~~-------------~~~~~~~i~is-pdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQT---------ISTLPEGFT-------------GENAPAEIAIS-PDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEEETTTTEEEEEEE---------EESCETTSC-------------SSSSEEEEEE--TTSSEEEEEECTTTEEEEEEE
T ss_pred EEeecccCCceeEEEE---------eeecccccc-------------ccCCceeEEEe-cCCCEEEEEeccCCEEEEEEE
Confidence 99988 554432210 011111000 12356788998 9999988876 4567999999
Q ss_pred CC
Q 001109 333 RA 334 (1155)
Q Consensus 333 ~s 334 (1155)
..
T Consensus 275 d~ 276 (345)
T PF10282_consen 275 DP 276 (345)
T ss_dssp CT
T ss_pred ec
Confidence 53
No 265
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.46 E-value=5.4e-05 Score=88.22 Aligned_cols=208 Identities=16% Similarity=0.236 Sum_probs=130.7
Q ss_pred CCceEEEEcCCCCEEEEEE-cCCeEEEEccCC-ceE-----EEEc---------CCCCCEEEEEEEcCCcEEEEEec-CC
Q 001109 43 STASILAFDHVQSLLAIGT-QDGRIKVIGGDN-IEG-----LLVS---------PKQLAFKHLEFLQNQGFLVSISS-GN 105 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs-~DG~I~vw~~~~-~~~-----~~~~---------~~~~~V~~l~Fs~dg~~LvS~s~-Dg 105 (1155)
.....++++|++++|+++. .+|+|.+|+... +.. +..+ .......++.|+|+|++|++++. .+
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D 166 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD 166 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence 4567799999999999987 479999998754 211 1111 11235678999999999988874 36
Q ss_pred eEEEEECCCCc--eee--e--ecCCCceeEEEEecCCCEEEEEeC-CCcEEEEEecCCCceeeccceeccCCceeeecee
Q 001109 106 EIQLWDLEARR--ITS--T--LPWESNITAFSVIFGTSYMYIGDE-YGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHL 178 (1155)
Q Consensus 106 ~I~vWDl~t~~--~~~--~--l~~~~~Vtsva~spd~~~l~~G~~-dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~ 178 (1155)
.|.+++++... +.. . ++.....+.++|+|+++++|+..+ +++|.+++++...+.+.... .++.
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~-~~~~--------- 236 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ-TIST--------- 236 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE-EEES---------
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE-Eeee---------
Confidence 79999998765 422 2 333466899999999999988776 56799998886555443100 0000
Q ss_pred EeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEE-cCCeEEEE
Q 001109 179 LLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVY-ANGLIILW 257 (1155)
Q Consensus 179 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~-~dG~I~lW 257 (1155)
++....+ .. ....|.++|++ ++|+++. ..+.|.++
T Consensus 237 --------------------------~~~~~~~-----~~-----~~~~i~ispdg--------~~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 237 --------------------------LPEGFTG-----EN-----APAEIAISPDG--------RFLYVSNRGSNSISVF 272 (345)
T ss_dssp --------------------------CETTSCS-----SS-----SEEEEEE-TTS--------SEEEEEECTTTEEEEE
T ss_pred --------------------------ccccccc-----cC-----CceeEEEecCC--------CEEEEEeccCCEEEEE
Confidence 0000000 00 12238899985 4566655 46899999
Q ss_pred Ecc--CCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEE-cCCcEEEEEcC
Q 001109 258 DVS--EDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGY-VDGDILLWNLR 333 (1155)
Q Consensus 258 d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~-~DG~I~lWd~~ 333 (1155)
++. ++++..... .. . .....+.++++ |||++|+++. .++.|.+|++.
T Consensus 273 ~~d~~~g~l~~~~~-----~~----~-------------------~G~~Pr~~~~s-~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 273 DLDPATGTLTLVQT-----VP----T-------------------GGKFPRHFAFS-PDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EECTTTTTEEEEEE-----EE----E-------------------SSSSEEEEEE--TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEecCCCceEEEEE-----Ee----C-------------------CCCCccEEEEe-CCCCEEEEEecCCCeEEEEEEe
Confidence 983 355543210 00 0 12336789998 9999999887 56789999875
No 266
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=1.5e-06 Score=98.66 Aligned_cols=178 Identities=16% Similarity=0.140 Sum_probs=118.4
Q ss_pred ccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCC
Q 001109 534 LTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSS 613 (1155)
Q Consensus 534 l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~d 613 (1155)
.+|+...+..+++ -.+.+-+++++.|+|||+|.+.... -.+.+...++....|..+|.++.|-.+.+++|+ .|
T Consensus 731 f~GH~~~iRai~A-idNENSFiSASkDKTVKLWSik~Eg----D~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD 803 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAA-IDNENSFISASKDKTVKLWSIKPEG----DEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CD 803 (1034)
T ss_pred ccCcHHHhHHHHh-cccccceeeccCCceEEEEEecccc----CccccceeeeEhhhccCcccceeeeeccceeee--cc
Confidence 4566665555533 3456678999999999999986421 011111122333478899999999999998776 48
Q ss_pred CeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCC--CCEEEEE-eCCCcEEEEecCC
Q 001109 614 GLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNF--GARLAVG-FECSQVAMLDIST 690 (1155)
Q Consensus 614 G~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpd--g~~LAsG-s~Dg~V~lWDi~~ 690 (1155)
|.+.+||.-.+...... ......+.++.|.+-|+ ...+..| +...+|+++|.+.
T Consensus 804 ~giHlWDPFigr~Laq~-----------------------~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs 860 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQM-----------------------EDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS 860 (1034)
T ss_pred CcceeecccccchhHhh-----------------------hcCcccCCCceeEecccCcchheeeeccchhhheeeeccc
Confidence 89999997554321000 00011223333433343 3344444 8899999999998
Q ss_pred ccEEEEeccC--CCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeee
Q 001109 691 FSVLFITDSL--SNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFS 763 (1155)
Q Consensus 691 ~~~l~~~~~~--~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~ 763 (1155)
+.......+. .+..+-+.+++.. +.|++|++|-..|+|.+.|..+|+.|.+
T Consensus 861 ce~~~E~kVcna~~Pna~~R~iaVa----------------------~~GN~lAa~LSnGci~~LDaR~G~vINs 913 (1034)
T KOG4190|consen 861 CEWTCELKVCNAPGPNALTRAIAVA----------------------DKGNKLAAALSNGCIAILDARNGKVINS 913 (1034)
T ss_pred ccceeeEEeccCCCCchheeEEEec----------------------cCcchhhHHhcCCcEEEEecCCCceecc
Confidence 7665544432 3444567888887 7799999999999999999999998875
No 267
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.41 E-value=3e-06 Score=92.06 Aligned_cols=219 Identities=16% Similarity=0.244 Sum_probs=132.7
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCCc---eE----EEEcCC-----------CCCEEEEEEEcCCc--EEEEEe
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDNI---EG----LLVSPK-----------QLAFKHLEFLQNQG--FLVSIS 102 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~---~~----~~~~~~-----------~~~V~~l~Fs~dg~--~LvS~s 102 (1155)
.-++++.|+..|.+||+|..+|+|-+|..... +. .+++.. ...|..+.|.++++ .++...
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 45899999999999999999999999975432 11 111111 34678888988765 344456
Q ss_pred cCCeEEEEECCCCceee---------------eec---------------------CC-CceeEEEEecCCCEEEEEeCC
Q 001109 103 SGNEIQLWDLEARRITS---------------TLP---------------------WE-SNITAFSVIFGTSYMYIGDEY 145 (1155)
Q Consensus 103 ~Dg~I~vWDl~t~~~~~---------------~l~---------------------~~-~~Vtsva~spd~~~l~~G~~d 145 (1155)
.|.+|++|-+..+.... +|+ .| -.|+++++..|...++++ +|
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-Dd 184 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DD 184 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cc
Confidence 79999999986542111 111 01 247788888888877665 45
Q ss_pred CcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCccccccccccccee
Q 001109 146 GMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFV 225 (1155)
Q Consensus 146 G~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v 225 (1155)
-.|-+|+++..++. |.| ..+.|.. ..... +-+
T Consensus 185 LRINLWnlei~d~s-----FnI-----------------------------------VDIKP~n-------mEeLt-eVI 216 (433)
T KOG1354|consen 185 LRINLWNLEIIDQS-----FNI-----------------------------------VDIKPAN-------MEELT-EVI 216 (433)
T ss_pred eeeeeccccccCCc-----eeE-----------------------------------EEccccC-------HHHHH-HHH
Confidence 66788877664432 211 1111110 11111 123
Q ss_pred eEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEE-ecccccccccccccCCCCCCCCCCcccccccccccCC
Q 001109 226 EIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLV-RGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKE 304 (1155)
Q Consensus 226 ~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1155)
++.-|||..- +.++-.++.|+|+|-|++...+--. ...++ .+-.|..... +++--..
T Consensus 217 TsaEFhp~~c-------n~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE------epedp~~rsf---------fseiIsS 274 (433)
T KOG1354|consen 217 TSAEFHPHHC-------NVFVYSSSKGTIRLCDMRQSALCDAHSKLFE------EPEDPSSRSF---------FSEIISS 274 (433)
T ss_pred hhhccCHhHc-------cEEEEecCCCcEEEeechhhhhhcchhhhhc------cccCCcchhh---------HHHHhhh
Confidence 3478999764 6888889999999999985443211 00100 0000000000 0112356
Q ss_pred ccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 305 ISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 305 V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
|..+-|+ ++|+++++-.. -+|++||+.-
T Consensus 275 ISDvKFs-~sGryilsRDy-ltvk~wD~nm 302 (433)
T KOG1354|consen 275 ISDVKFS-HSGRYILSRDY-LTVKLWDLNM 302 (433)
T ss_pred hhceEEc-cCCcEEEEecc-ceeEEEeccc
Confidence 8889999 99999997643 4899999854
No 268
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.41 E-value=0.0015 Score=75.11 Aligned_cols=126 Identities=11% Similarity=0.101 Sum_probs=86.2
Q ss_pred EEec-CCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEE
Q 001109 599 EFCS-VTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVG 677 (1155)
Q Consensus 599 afsp-dg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsG 677 (1155)
.|.+ ||+++.+... |+|.+-|+......... ...++..++... .-.++.+.-++++|+|++|-+.
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~--------~~~~~~~~~~~~-----~wrP~g~q~ia~~~dg~~lyV~ 265 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP--------AIEAFTEAEKAD-----GWRPGGWQQVAYHRARDRIYLL 265 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecc--------eeeecccccccc-----ccCCCcceeEEEcCCCCEEEEE
Confidence 4566 8888877776 99999997654211000 000111000000 0124444559999999988874
Q ss_pred eC----------CCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCc-EEEEEe-
Q 001109 678 FE----------CSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKE-TLFFMT- 745 (1155)
Q Consensus 678 s~----------Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~-~L~s~s- 745 (1155)
.. .+.|.++|..+++++..... ..++.+++|+ ||++ +|++..
T Consensus 266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS----------------------~Dgkp~lyvtn~ 319 (352)
T TIGR02658 266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVS----------------------QDAKPLLYALST 319 (352)
T ss_pred ecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEEC----------------------CCCCeEEEEeCC
Confidence 32 24799999999999887643 3578999999 8999 888777
Q ss_pred CCceEEEEECCCCceeeee
Q 001109 746 KDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 746 ~Dg~I~vwd~~tG~~l~~~ 764 (1155)
.++.|.|+|..+++.+.+.
T Consensus 320 ~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 320 GDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCcEEEEECcCCeEEeee
Confidence 5788999999999999887
No 269
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.39 E-value=6.6e-05 Score=81.95 Aligned_cols=134 Identities=15% Similarity=0.109 Sum_probs=76.9
Q ss_pred ccCCc-CcEEEEEECCCcEEEEeCCCCCeeeee--eeCCCcCccc---cCCCCCCeEEEEEecCCCeEEEEeCCCeEEEE
Q 001109 546 EDYLV-ERLYIAGYRDGSTRIWDATYPTLSLIH--VFGSELPGIR---TATESESVSALEFCSVTLNLAIGSSSGLVWLY 619 (1155)
Q Consensus 546 ~~s~~-~~lLaTgs~DgtVrlWD~~~~~l~~l~--~l~~~~~~i~---~~gh~~~V~~lafspdg~~Lasgs~dG~V~lw 619 (1155)
.|+|. .++++=.+.-|+||+-|++...|..-. .++.+..... ..+--..|..+.|+++|+++++-+- -+|++|
T Consensus 220 EFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~w 298 (433)
T KOG1354|consen 220 EFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLW 298 (433)
T ss_pred ccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEE
Confidence 44443 346777777999999999854421100 1111110000 0011237889999999999987542 689999
Q ss_pred EeccCccccceeeeccCCceEEEecCCCCC-ceeEEeecCCCCe---EEEEEcCCCCEEEEEeCCCcEEEEecCCccE
Q 001109 620 NLIKSSNEETLNLVTETGKEVHILPGGDGP-QCKALFSVLNSPI---CNLKFSNFGARLAVGFECSQVAMLDISTFSV 693 (1155)
Q Consensus 620 d~~~~~~~~~~~~v~~~~~~~~~~~~~~g~-~~~~~l~~h~~~V---tslafSpdg~~LAsGs~Dg~V~lWDi~~~~~ 693 (1155)
|+.-....... +.++.-.-. .| ..+ -++.| .-++||-++.+++||+....++++++..++.
T Consensus 299 D~nme~~pv~t----------~~vh~~lr~kLc-~lY--EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 299 DLNMEAKPVET----------YPVHEYLRSKLC-SLY--ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred eccccCCcceE----------EeehHhHHHHHH-HHh--hccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 99765432111 001000000 00 000 01222 3478999999999999999999999876654
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.38 E-value=3.4e-05 Score=101.55 Aligned_cols=185 Identities=16% Similarity=0.079 Sum_probs=110.5
Q ss_pred ccCC-cCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCC---cCc-cccCCCCCCeEEEEEecCCCeE-EEEeCCCeEEEE
Q 001109 546 EDYL-VERLYIAGYRDGSTRIWDATYPTLSLIHVFGSE---LPG-IRTATESESVSALEFCSVTLNL-AIGSSSGLVWLY 619 (1155)
Q Consensus 546 ~~s~-~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~---~~~-i~~~gh~~~V~~lafspdg~~L-asgs~dG~V~lw 619 (1155)
+++| ++.++++.+.++.|++||...+..... .-... ..+ ......-...+.|+|+|++++| ++-..++.|++|
T Consensus 689 a~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~-~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~ 767 (1057)
T PLN02919 689 CFEPVNEKVYIAMAGQHQIWEYNISDGVTRVF-SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL 767 (1057)
T ss_pred EEecCCCeEEEEECCCCeEEEEECCCCeEEEE-ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence 6777 678899999999999999987753211 00000 000 0000011245689999999855 555567999999
Q ss_pred EeccCccccceeeeccCC---ceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEE
Q 001109 620 NLIKSSNEETLNLVTETG---KEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFI 696 (1155)
Q Consensus 620 d~~~~~~~~~~~~v~~~~---~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~ 696 (1155)
|+.++... . .....+ ......-..+|......+ .| -.+|+|+++|+.+++-+.++.|++||..++.+...
T Consensus 768 D~~tg~~~--~-~~gg~~~~~~~l~~fG~~dG~g~~~~l-~~---P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 768 DLKTGGSR--L-LAGGDPTFSDNLFKFGDHDGVGSEVLL-QH---PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTL 840 (1057)
T ss_pred ECCCCcEE--E-EEecccccCcccccccCCCCchhhhhc-cC---CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 98764311 0 000000 000000001111111111 12 24799999999999999999999999988766532
Q ss_pred ecc-CCC---------CCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCce
Q 001109 697 TDS-LSN---------SNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHI 760 (1155)
Q Consensus 697 ~~~-~~~---------h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~ 760 (1155)
... ..+ .-.....++++ ++|+++++-+.+++|++||+.+++.
T Consensus 841 aG~G~~G~~dG~~~~a~l~~P~GIavd----------------------~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 841 AGTGKAGFKDGKALKAQLSEPAGLALG----------------------ENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred eccCCcCCCCCcccccccCCceEEEEe----------------------CCCCEEEEECCCCEEEEEECCCCcc
Confidence 210 000 11123455665 7899999999999999999999876
No 271
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.33 E-value=3.6e-05 Score=82.89 Aligned_cols=100 Identities=18% Similarity=0.196 Sum_probs=73.5
Q ss_pred ceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCC-------CCCEEEEEEEcCC------cEEEEEecCCeEEEEE
Q 001109 45 ASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPK-------QLAFKHLEFLQNQ------GFLVSISSGNEIQLWD 111 (1155)
Q Consensus 45 vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~-------~~~V~~l~Fs~dg------~~LvS~s~Dg~I~vWD 111 (1155)
=.-|+||||+.+||.+...|+|+|||.-+.+.....+. ..+|..+.|.+.. ..|+....+|.++=+-
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 35699999999999999999999999887665433322 3578888887642 2477777888877666
Q ss_pred CCCC-----ceeeeecC----CCceeEEEEecCCCEEEEEeC
Q 001109 112 LEAR-----RITSTLPW----ESNITAFSVIFGTSYMYIGDE 144 (1155)
Q Consensus 112 l~t~-----~~~~~l~~----~~~Vtsva~spd~~~l~~G~~ 144 (1155)
+..+ +..+++.. +..|+++.++|..++|++|+.
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence 5322 33444443 367999999999999988874
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.31 E-value=0.00016 Score=95.43 Aligned_cols=230 Identities=13% Similarity=0.116 Sum_probs=131.9
Q ss_pred CceEEEEcCCCCEEEEEE-cCCeEEEEccCCceEEEEcC---------C--------CCCEEEEEEEcCCc-EEEEEecC
Q 001109 44 TASILAFDHVQSLLAIGT-QDGRIKVIGGDNIEGLLVSP---------K--------QLAFKHLEFLQNQG-FLVSISSG 104 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs-~DG~I~vw~~~~~~~~~~~~---------~--------~~~V~~l~Fs~dg~-~LvS~s~D 104 (1155)
....|+|+++++.|.++. .++.|++++..+........ . -..-..|+|+|+++ ..++.+.+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 367899999988666654 45789999876654322110 0 01235799999544 45555678
Q ss_pred CeEEEEECCCCceeeeecC----------------CCceeEEEEecCCCEEEEEeC-CCcEEEEEecCCCceeeccceec
Q 001109 105 NEIQLWDLEARRITSTLPW----------------ESNITAFSVIFGTSYMYIGDE-YGMVYVLKYDTEEGKLIHSPYYV 167 (1155)
Q Consensus 105 g~I~vWDl~t~~~~~~l~~----------------~~~Vtsva~spd~~~l~~G~~-dG~V~vw~~d~~~~~l~~~~~~i 167 (1155)
+.|++||..++... .+.+ -...+.++++|++++||+++. ++.|++|+++.....+..
T Consensus 705 ~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~----- 778 (1057)
T PLN02919 705 HQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA----- 778 (1057)
T ss_pred CeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE-----
Confidence 89999999877542 1111 023567999999997777654 577777765542211110
Q ss_pred cCCceeeeceeEeeEecccccccccccccccceeeecCCC-CCCCcccccccccccceeeEEEEeecccccccccccEEE
Q 001109 168 PKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPP-DESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLL 246 (1155)
Q Consensus 168 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~ll 246 (1155)
..... .++ ..+.... +..+... ......+ +++.|+ | +.++
T Consensus 779 gg~~~----------~~~---------------~l~~fG~~dG~g~~~-~l~~P~G-----vavd~d--G------~LYV 819 (1057)
T PLN02919 779 GGDPT----------FSD---------------NLFKFGDHDGVGSEV-LLQHPLG-----VLCAKD--G------QIYV 819 (1057)
T ss_pred ecccc----------cCc---------------ccccccCCCCchhhh-hccCCce-----eeEeCC--C------cEEE
Confidence 00000 000 0000000 0000000 0011123 888886 4 5677
Q ss_pred EEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCc
Q 001109 247 LVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGD 326 (1155)
Q Consensus 247 sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~ 326 (1155)
+-+.++.|++||..++.+....+.... +.. .|.. . ...-.....++++ ++|+.+++-+.++.
T Consensus 820 ADs~N~rIrviD~~tg~v~tiaG~G~~--------G~~--dG~~-----~--~a~l~~P~GIavd-~dG~lyVaDt~Nn~ 881 (1057)
T PLN02919 820 ADSYNHKIKKLDPATKRVTTLAGTGKA--------GFK--DGKA-----L--KAQLSEPAGLALG-ENGRLFVADTNNSL 881 (1057)
T ss_pred EECCCCEEEEEECCCCeEEEEeccCCc--------CCC--CCcc-----c--ccccCCceEEEEe-CCCCEEEEECCCCE
Confidence 777889999999998877654321000 000 0000 0 0012356789998 99998888889999
Q ss_pred EEEEEcCCCC
Q 001109 327 ILLWNLRAAA 336 (1155)
Q Consensus 327 I~lWd~~s~~ 336 (1155)
|++||+.++.
T Consensus 882 Irvid~~~~~ 891 (1057)
T PLN02919 882 IRYLDLNKGE 891 (1057)
T ss_pred EEEEECCCCc
Confidence 9999998764
No 273
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.31 E-value=5.3e-06 Score=92.41 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=105.5
Q ss_pred ceEEEEcCCCCEEEEEEcCCeEEEEccC--C--ceEEEEcCCCCCEEEEEEEcCCcEEEE---EecCCeEEEEECCCCce
Q 001109 45 ASILAFDHVQSLLAIGTQDGRIKVIGGD--N--IEGLLVSPKQLAFKHLEFLQNQGFLVS---ISSGNEIQLWDLEARRI 117 (1155)
Q Consensus 45 vs~lafsp~g~lLAsgs~DG~I~vw~~~--~--~~~~~~~~~~~~V~~l~Fs~dg~~LvS---~s~Dg~I~vWDl~t~~~ 117 (1155)
...+.++|.|++||++..+....+++.. . .+++-.+.-...-.++.|..+...... +++...+.+|....+++
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 4456789999999999999887676532 2 233322222223344555544443333 34456788888777666
Q ss_pred eeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccc
Q 001109 118 TSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFN 197 (1155)
Q Consensus 118 ~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ 197 (1155)
...+-+-+-++.++++||++++++++.|+.|+|-.|+.. +-|..- ..|
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~--------f~Iesf-------------------clG----- 192 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT--------FVIESF-------------------CLG----- 192 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc--------cchhhh-------------------ccc-----
Confidence 655544589999999999999999999999988766541 111110 001
Q ss_pred cceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEE
Q 001109 198 ASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLV 267 (1155)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~ 267 (1155)
|. .+|..++..++ ..|++|+.|++|++||+.+|+.+..
T Consensus 193 -------------------H~----eFVS~isl~~~---------~~LlS~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 193 -------------------HK----EFVSTISLTDN---------YLLLSGSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred -------------------cH----hheeeeeeccC---------ceeeecCCCCcEEEEecccCCcccc
Confidence 11 14445777775 3589999999999999999998753
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.29 E-value=0.00031 Score=80.67 Aligned_cols=76 Identities=12% Similarity=0.033 Sum_probs=60.4
Q ss_pred EcCCCCEEEEEEc----------CCeEEEEccCCceEEEEcCCCC--------CEEEEEEEcCCcEEEEEe-c-CCeEEE
Q 001109 50 FDHVQSLLAIGTQ----------DGRIKVIGGDNIEGLLVSPKQL--------AFKHLEFLQNQGFLVSIS-S-GNEIQL 109 (1155)
Q Consensus 50 fsp~g~lLAsgs~----------DG~I~vw~~~~~~~~~~~~~~~--------~V~~l~Fs~dg~~LvS~s-~-Dg~I~v 109 (1155)
+||||+.|.++.. +..|.|||..+.+.+...+... .-..++|+|||++|+... . ++.|-|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998887776 6899999999888775543211 223789999999988776 3 789999
Q ss_pred EECCCCceeeeecCCC
Q 001109 110 WDLEARRITSTLPWES 125 (1155)
Q Consensus 110 WDl~t~~~~~~l~~~~ 125 (1155)
.|+.+++.+.++...+
T Consensus 133 vD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD 148 (352)
T ss_pred EECCCCcEEEEEeCCC
Confidence 9999999998887654
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.28 E-value=0.00043 Score=81.72 Aligned_cols=153 Identities=16% Similarity=-0.006 Sum_probs=90.3
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCC--CCeEEEEEec--CCCeEEEEeCCCeEEEEEeccCcccc
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATES--ESVSALEFCS--VTLNLAIGSSSGLVWLYNLIKSSNEE 628 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~--~~V~~lafsp--dg~~Lasgs~dG~V~lwd~~~~~~~~ 628 (1155)
.++.+..+|.+..+|..++... ........ .+.. ..+..+.-+| .+..+.+++.+|.++.||..+++.
T Consensus 192 ~v~~~~~~g~v~ald~~tG~~~--W~~~~~~~----~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~-- 263 (377)
T TIGR03300 192 GVLVGFAGGKLVALDLQTGQPL--WEQRVALP----KGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV-- 263 (377)
T ss_pred EEEEECCCCEEEEEEccCCCEe--eeeccccC----CCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE--
Confidence 5667778889999998877631 21110000 0000 0000000011 245677788899999999876532
Q ss_pred ceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCee
Q 001109 629 TLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVL 708 (1155)
Q Consensus 629 ~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~ 708 (1155)
+|. ..... ....+ .++.+|.+++.||.|..+|..+++.+.....+.+ ..+.
T Consensus 264 -----------~W~----------~~~~~----~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~--~~~s 314 (377)
T TIGR03300 264 -----------LWK----------RDASS----YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKY--RQLT 314 (377)
T ss_pred -----------EEe----------eccCC----ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccC--Cccc
Confidence 111 11111 11122 2466788889999999999999988765421111 0111
Q ss_pred EEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeec
Q 001109 709 YLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSI 766 (1155)
Q Consensus 709 slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~ 766 (1155)
+.. ..+..|++++.||.|.+||..+|+++...++
T Consensus 315 sp~------------------------i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 315 APA------------------------VVGGYLVVGDFEGYLHWLSREDGSFVARLKT 348 (377)
T ss_pred cCE------------------------EECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 111 2356899999999999999999999988754
No 276
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=98.27 E-value=1.6e-06 Score=88.26 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=60.2
Q ss_pred CCCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 001109 1083 SRTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWWQ 1154 (1155)
Q Consensus 1083 ~~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~~~~~ww~ 1154 (1155)
.++.|++.+. ++|++.+|.+||+++++|||||+.|.++++.|...++-|.+.|++.++. +||+
T Consensus 128 ~D~~d~l~~e-----l~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~akk~n~~----~~~~ 190 (190)
T COG5143 128 QDKLDQLQQE-----LEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSNLC----CLIN 190 (190)
T ss_pred hhHHHHHHHH-----HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhhhh----heeC
Confidence 4778999888 8899999999999999999999999999999999999999999999999 9996
No 277
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.27 E-value=2.2e-06 Score=65.49 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=34.9
Q ss_pred eeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001109 651 CKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLD 687 (1155)
Q Consensus 651 ~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWD 687 (1155)
++.++.+|.++|++|+|+|++.+||+|+.|++|+|||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4568899999999999999999999999999999998
No 278
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.26 E-value=0.0013 Score=77.53 Aligned_cols=103 Identities=12% Similarity=0.119 Sum_probs=69.9
Q ss_pred CCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCCCceeEEEEe
Q 001109 54 QSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESNITAFSVI 133 (1155)
Q Consensus 54 g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~s 133 (1155)
+..+.+++.+|.|..||..+++.+........+..- ...+++.++.++.++.+..+|.++|+.+......+.+.+.-..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~-p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v 143 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGG-VGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV 143 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccc-eEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE
Confidence 668888999999999998877777654433322211 1224577888889999999999999988776655444322222
Q ss_pred cCCCEEEEEeCCCcEEEEEecCCCcee
Q 001109 134 FGTSYMYIGDEYGMVYVLKYDTEEGKL 160 (1155)
Q Consensus 134 pd~~~l~~G~~dG~V~vw~~d~~~~~l 160 (1155)
.+..+++++.+|.++.+ |..+++.
T Consensus 144 -~~~~v~v~~~~g~l~a~--d~~tG~~ 167 (377)
T TIGR03300 144 -ANGLVVVRTNDGRLTAL--DAATGER 167 (377)
T ss_pred -ECCEEEEECCCCeEEEE--EcCCCce
Confidence 35577888888977655 5544443
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=8.5e-05 Score=87.31 Aligned_cols=135 Identities=20% Similarity=0.270 Sum_probs=86.2
Q ss_pred cCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccccccee
Q 001109 122 PWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLL 201 (1155)
Q Consensus 122 ~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 201 (1155)
+.+....|+++.....|+++|+.||.++|.+++++...+..++..-+. +.+
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~s---------------------------nLs-- 62 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAAS---------------------------NLS-- 62 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccccccc---------------------------ccc--
Confidence 344667899999999999999999999999988765332221211000 000
Q ss_pred eecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccccccccccc
Q 001109 202 FYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVD 281 (1155)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~ 281 (1155)
+...-. .|...| ..+.|+.+. ..|-+...+|.|.+|-+-.|.-... ..+
T Consensus 63 ---mNQtLe----GH~~sV-----~vvTWNe~~--------QKLTtSDt~GlIiVWmlykgsW~EE------MiN----- 111 (1189)
T KOG2041|consen 63 ---MNQTLE----GHNASV-----MVVTWNENN--------QKLTTSDTSGLIIVWMLYKGSWCEE------MIN----- 111 (1189)
T ss_pred ---hhhhhc----cCcceE-----EEEEecccc--------ccccccCCCceEEEEeeecccHHHH------Hhh-----
Confidence 000000 022333 337887653 3577777899999998876653210 000
Q ss_pred CCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 282 DPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
....+-|.+++|. .||+.|+..|.||.|.+=.+..
T Consensus 112 -----------------nRnKSvV~SmsWn-~dG~kIcIvYeDGavIVGsvdG 146 (1189)
T KOG2041|consen 112 -----------------NRNKSVVVSMSWN-LDGTKICIVYEDGAVIVGSVDG 146 (1189)
T ss_pred -----------------CcCccEEEEEEEc-CCCcEEEEEEccCCEEEEeecc
Confidence 0025668999999 8999999999999998865544
No 280
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.22 E-value=4.1e-05 Score=91.72 Aligned_cols=159 Identities=12% Similarity=0.023 Sum_probs=96.8
Q ss_pred ccCCcCcEEEEEE-C----CCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEe-CCCeEEEE
Q 001109 546 EDYLVERLYIAGY-R----DGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGS-SSGLVWLY 619 (1155)
Q Consensus 546 ~~s~~~~lLaTgs-~----DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs-~dG~V~lw 619 (1155)
.++|||+.|+..+ . |..+.+|++..+.......+. .++.......+|+|||+.|+..+ .+|...+|
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt--------~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL--------NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY 308 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee--------cCCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 6889997776544 2 334455776542100001111 01112345779999999888765 46777777
Q ss_pred EeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEecCCccEEEE
Q 001109 620 NLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFEC---SQVAMLDISTFSVLFI 696 (1155)
Q Consensus 620 d~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~D---g~V~lWDi~~~~~l~~ 696 (1155)
.+......+ . ...+..+...+.+.+|||||++||..+.+ ..|.+||+.++....
T Consensus 309 ~~~~~~~g~----------~------------~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~- 365 (428)
T PRK01029 309 IMQIDPEGQ----------S------------PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ- 365 (428)
T ss_pred EEECccccc----------c------------eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-
Confidence 654211000 0 01233344567789999999999876553 369999999886642
Q ss_pred eccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeC---CceEEEEECCCCce
Q 001109 697 TDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTK---DAHIVVCDSTTGHI 760 (1155)
Q Consensus 697 ~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~---Dg~I~vwd~~tG~~ 760 (1155)
+......+.+..|+ |||+.|+..+. +..|.+||+.+|+.
T Consensus 366 ---Lt~~~~~~~~p~wS----------------------pDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 366 ---LTTSPENKESPSWA----------------------IDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred ---ccCCCCCccceEEC----------------------CCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 12223456778888 88888875443 35788899887765
No 281
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.18 E-value=2.5e-05 Score=85.22 Aligned_cols=174 Identities=21% Similarity=0.185 Sum_probs=115.8
Q ss_pred CcCcEEEEEECCCcEEEEeC-CCCCeee-eeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcc
Q 001109 549 LVERLYIAGYRDGSTRIWDA-TYPTLSL-IHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSN 626 (1155)
Q Consensus 549 ~~~~lLaTgs~DgtVrlWD~-~~~~l~~-l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~ 626 (1155)
|...-+++.+.|.+||+|-- ..++.-+ ++. .-..+++++++.++.+.|.+|-..|+|.-|.+...-.
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-----------~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn 102 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-----------YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN 102 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCchhhh-----------hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh
Confidence 44446889999999999942 2222100 111 1124788888888888888888888887776654311
Q ss_pred cc--------cee------e-------eccC----------------------------------------CceEEEecC
Q 001109 627 EE--------TLN------L-------VTET----------------------------------------GKEVHILPG 645 (1155)
Q Consensus 627 ~~--------~~~------~-------v~~~----------------------------------------~~~~~~~~~ 645 (1155)
.. +.. | ++.+ .+.+..+..
T Consensus 103 km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~ 182 (404)
T KOG1409|consen 103 KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKL 182 (404)
T ss_pred hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEE
Confidence 00 000 0 0000 000111100
Q ss_pred -CCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccC
Q 001109 646 -GDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTIS 724 (1155)
Q Consensus 646 -~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~ 724 (1155)
..+...+.++.+|.++|++++|.|..++|-+|+.|..|.+||+-..+-... .+.+|...|..|.+-
T Consensus 183 ~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~--el~gh~~kV~~l~~~----------- 249 (404)
T KOG1409|consen 183 EQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAY--ELQGHNDKVQALSYA----------- 249 (404)
T ss_pred eecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceee--eeccchhhhhhhhhh-----------
Confidence 123445667889999999999999999999999999999999976544322 235799999999886
Q ss_pred CCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC
Q 001109 725 PKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 725 ~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t 757 (1155)
+--+.|++++.||-|.+||.+.
T Consensus 250 -----------~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 250 -----------QHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred -----------hhheeeeeccCCCeEEEEeccc
Confidence 3356799999999999999654
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.15 E-value=0.0003 Score=83.89 Aligned_cols=115 Identities=7% Similarity=0.014 Sum_probs=75.4
Q ss_pred CceEEEEcCCCCE-EEEEEcC---CeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEE-ecC--CeEEEEECCCCc
Q 001109 44 TASILAFDHVQSL-LAIGTQD---GRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSI-SSG--NEIQLWDLEARR 116 (1155)
Q Consensus 44 ~vs~lafsp~g~l-LAsgs~D---G~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~-s~D--g~I~vWDl~t~~ 116 (1155)
.....+|+|||+. ++..+.+ ..|.+++..+.+........+.+....|+|||++|+-. +.+ ..|.++|+.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 5667899999984 7765544 46888888776554433345556678899999877643 333 467788988886
Q ss_pred eeeeecCCCceeEEEEecCCCEEEEEe-CCCcEEEEEecCCCc
Q 001109 117 ITSTLPWESNITAFSVIFGTSYMYIGD-EYGMVYVLKYDTEEG 158 (1155)
Q Consensus 117 ~~~~l~~~~~Vtsva~spd~~~l~~G~-~dG~V~vw~~d~~~~ 158 (1155)
...-...........|+|||+.|+..+ ..|.-.||.+|...+
T Consensus 269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 443222333344568999999776655 455556666666543
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.11 E-value=1.3e-05 Score=94.34 Aligned_cols=113 Identities=12% Similarity=0.049 Sum_probs=69.8
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCC--eEEEEEeccCccccce
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSG--LVWLYNLIKSSNEETL 630 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG--~V~lwd~~~~~~~~~~ 630 (1155)
.+.+.+.||+|++||.....-..-+.. ..+.+|+--.|-|-|.-..+--..| +|.+++-+....
T Consensus 216 ~~~s~~~d~tvkfw~y~kSt~e~~~~v----------tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~---- 281 (1081)
T KOG0309|consen 216 EIMSSSNDGTVKFWDYSKSTTESKRTV----------TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDL---- 281 (1081)
T ss_pred hhcccCCCCceeeecccccccccceec----------cccCcceeccccccCceeEeccccCCeeeeeccccchhh----
Confidence 466778899999999865542111222 1234888888888776433322222 455554443211
Q ss_pred eeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCC--------C--CEEEEEeCCCcEEEEecCC
Q 001109 631 NLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNF--------G--ARLAVGFECSQVAMLDIST 690 (1155)
Q Consensus 631 ~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpd--------g--~~LAsGs~Dg~V~lWDi~~ 690 (1155)
.+..-++.+++.+|.||.+.|...-|--. . -.|+|=|.|.++++|-+.+
T Consensus 282 -----------e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 282 -----------EWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred -----------hhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 11113456677889999988765554332 2 2699999999999998875
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.10 E-value=0.00048 Score=78.09 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=96.2
Q ss_pred ccCCCCCceEEEEcCCCCEEEEEEcCC-eEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCc
Q 001109 38 HYGIPSTASILAFDHVQSLLAIGTQDG-RIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARR 116 (1155)
Q Consensus 38 ~~G~~~~vs~lafsp~g~lLAsgs~DG-~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~ 116 (1155)
+-|+++.|....+.-+++-++.|+.|| .+-|||..+.+.-..-+.-+.|.++..+++|.+++.+.....|-+.|++++.
T Consensus 355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 458899999999999999999999999 8999999998876655566789999999999999988877888888999987
Q ss_pred eeeeecC-CCceeEEEEecCCCEEEEEeCCC----cEEEEEecC
Q 001109 117 ITSTLPW-ESNITAFSVIFGTSYMYIGDEYG----MVYVLKYDT 155 (1155)
Q Consensus 117 ~~~~l~~-~~~Vtsva~spd~~~l~~G~~dG----~V~vw~~d~ 155 (1155)
...-=+. .+-|+.++++|+++|+|-+--+| .|++++.+.
T Consensus 435 v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 5432222 37799999999999999877666 455654443
No 285
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=5.8e-06 Score=81.48 Aligned_cols=60 Identities=22% Similarity=0.325 Sum_probs=53.9
Q ss_pred CCCC-CCCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001109 1079 TKPK-SRTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGEL 1143 (1155)
Q Consensus 1079 ~~~~-~~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l 1143 (1155)
++|. .+.+-+|++. ++|.|.||...|+.||||||||+.|++|+|+|..+++.|.++|++-
T Consensus 131 qdP~ead~l~kvQ~E-----ldETKiiLhkTiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK~ 191 (198)
T KOG0861|consen 131 QDPAEADPLLKVQNE-----LDETKIILHKTIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKKT 191 (198)
T ss_pred cChhhhChHHHHHHH-----HHHHHHHHHHHHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 4564 3677778877 8999999999999999999999999999999999999999999864
No 286
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.09 E-value=0.00084 Score=74.67 Aligned_cols=116 Identities=19% Similarity=0.258 Sum_probs=86.2
Q ss_pred eEEEEcCCCCEEEEEEcC-CeEEEEccCC-ce---EEEEcCCCCC----------EEEEEEEcCCcEEEEEecC-CeEEE
Q 001109 46 SILAFDHVQSLLAIGTQD-GRIKVIGGDN-IE---GLLVSPKQLA----------FKHLEFLQNQGFLVSISSG-NEIQL 109 (1155)
Q Consensus 46 s~lafsp~g~lLAsgs~D-G~I~vw~~~~-~~---~~~~~~~~~~----------V~~l~Fs~dg~~LvS~s~D-g~I~v 109 (1155)
..+++|++|++|.++.-. |.|.|+-... +. ..-...|.++ +....|.|++++|++++-. ..|.+
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL 171 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence 789999999999988754 8999986532 11 1111122222 7788999999999998753 57999
Q ss_pred EECCCCceeee----ecCCCceeEEEEecCCCEEEEEeC-CCcEEEEEecCCCceee
Q 001109 110 WDLEARRITST----LPWESNITAFSVIFGTSYMYIGDE-YGMVYVLKYDTEEGKLI 161 (1155)
Q Consensus 110 WDl~t~~~~~~----l~~~~~Vtsva~spd~~~l~~G~~-dG~V~vw~~d~~~~~l~ 161 (1155)
++++.|.+... ++....-+.++|+|++++.|+-.+ +++|-||.|+...+++.
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 99998876533 222355789999999999998876 88999999998765543
No 287
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.08 E-value=6.6e-05 Score=82.07 Aligned_cols=202 Identities=17% Similarity=0.251 Sum_probs=139.8
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCC----ceEEE-EcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCC
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDN----IEGLL-VSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA 114 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~----~~~~~-~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t 114 (1155)
--|..+++++|.+.-..|.+|..+|+|.=|-... ..... -..|..+|..+-|+-.-.++++.+.|..+.-=-.+.
T Consensus 66 ~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 66 YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence 4577899999999999999999999998775321 11111 124678999999999888999999988774444556
Q ss_pred CceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccc
Q 001109 115 RRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKA 194 (1155)
Q Consensus 115 ~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~ 194 (1155)
+..+..+.....-+++.++-. +.++|...|.|.+..++.....++ ++.. +
T Consensus 146 ~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i---~~~~-----------------------~-- 195 (404)
T KOG1409|consen 146 GNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLI---TTFN-----------------------G-- 195 (404)
T ss_pred CCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceE---EEEc-----------------------C--
Confidence 665554444433344444433 778888888877666555332211 0000 0
Q ss_pred ccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccc
Q 001109 195 AFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQ 274 (1155)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~ 274 (1155)
+...++ ++.|.|.. .+|.+|++|..|.+||+--.+-+...
T Consensus 196 ---------------------h~~~~~-----~l~Wd~~~--------~~LfSg~~d~~vi~wdigg~~g~~~e------ 235 (404)
T KOG1409|consen 196 ---------------------HTGEVT-----CLKWDPGQ--------RLLFSGASDHSVIMWDIGGRKGTAYE------ 235 (404)
T ss_pred ---------------------cccceE-----EEEEcCCC--------cEEEeccccCceEEEeccCCcceeee------
Confidence 123333 48898864 57999999999999998655443320
Q ss_pred cccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 275 LKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
...|...|..++.. +--+++.+.+.||.|.+|+++-.
T Consensus 236 -----------------------l~gh~~kV~~l~~~-~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 236 -----------------------LQGHNDKVQALSYA-QHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred -----------------------eccchhhhhhhhhh-hhheeeeeccCCCeEEEEeccce
Confidence 11247788899988 78899999999999999999764
No 288
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.05 E-value=0.0055 Score=68.38 Aligned_cols=211 Identities=13% Similarity=0.139 Sum_probs=128.0
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcC---CeEEEEccCC--ceEEEEc--C-CCCCEEEEEEEcCCcEEEEEec-CCeEEEE
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQD---GRIKVIGGDN--IEGLLVS--P-KQLAFKHLEFLQNQGFLVSISS-GNEIQLW 110 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~D---G~I~vw~~~~--~~~~~~~--~-~~~~V~~l~Fs~dg~~LvS~s~-Dg~I~vW 110 (1155)
...+.++-|+|+|++++|-++-.+ |.|--|..+. ++..+.- . ...+-+.++++++|++|+++.. -|.|.|.
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 556789999999999888877655 6677765443 4443321 1 1234489999999999999984 5889999
Q ss_pred ECCC-Cceee---eecCC----------CceeEEEEecCCCEEEEEeCC-CcEEEEEecCCCceeeccceeccCCceeee
Q 001109 111 DLEA-RRITS---TLPWE----------SNITAFSVIFGTSYMYIGDEY-GMVYVLKYDTEEGKLIHSPYYVPKDVIEVF 175 (1155)
Q Consensus 111 Dl~t-~~~~~---~l~~~----------~~Vtsva~spd~~~l~~G~~d-G~V~vw~~d~~~~~l~~~~~~i~~~~~~~~ 175 (1155)
-+.. |.+.. .+... ..+.+..|.|++++|++-+-. -.|.++ +.++++|. |+.
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y--~~~dg~L~--~~~--------- 183 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY--DLDDGKLT--PAD--------- 183 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE--EcccCccc--ccc---------
Confidence 9865 54432 22222 238889999999999876532 224444 44455554 100
Q ss_pred ceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEc-CCeE
Q 001109 176 NHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYA-NGLI 254 (1155)
Q Consensus 176 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~-dG~I 254 (1155)
.+.++++ ..-.. |.|||+.. ...+..+ +++|
T Consensus 184 --------------------------~~~v~~G---------~GPRH-----i~FHpn~k--------~aY~v~EL~stV 215 (346)
T COG2706 184 --------------------------PAEVKPG---------AGPRH-----IVFHPNGK--------YAYLVNELNSTV 215 (346)
T ss_pred --------------------------ccccCCC---------CCcce-----EEEcCCCc--------EEEEEeccCCEE
Confidence 0111111 11233 99999854 4555555 7999
Q ss_pred EEEEccC--CeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEc-CCcEEEEE
Q 001109 255 ILWDVSE--DKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYV-DGDILLWN 331 (1155)
Q Consensus 255 ~lWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~-DG~I~lWd 331 (1155)
.+|.... ++.... |....++.+- .......++..+ +||++|.+.-. ...|.++.
T Consensus 216 ~v~~y~~~~g~~~~l------Q~i~tlP~dF----------------~g~~~~aaIhis-~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 216 DVLEYNPAVGKFEEL------QTIDTLPEDF----------------TGTNWAAAIHIS-PDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred EEEEEcCCCceEEEe------eeeccCcccc----------------CCCCceeEEEEC-CCCCEEEEecCCCCeEEEEE
Confidence 9999876 333222 1111111110 124556678888 99999887643 22566666
Q ss_pred cCC
Q 001109 332 LRA 334 (1155)
Q Consensus 332 ~~s 334 (1155)
+..
T Consensus 273 V~~ 275 (346)
T COG2706 273 VDP 275 (346)
T ss_pred EcC
Confidence 543
No 289
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.97 E-value=0.00061 Score=77.26 Aligned_cols=150 Identities=11% Similarity=0.045 Sum_probs=106.8
Q ss_pred CCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCC-eEEEEECCCCceeeeecCCCceeEEE
Q 001109 53 VQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGN-EIQLWDLEARRITSTLPWESNITAFS 131 (1155)
Q Consensus 53 ~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg-~I~vWDl~t~~~~~~l~~~~~Vtsva 131 (1155)
+|.++|.-+. |...|.+.-..-. .+.++...|+...+..++.-++.+..|| .+-|+|.+++..-.-.+.-+.|.++.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~-iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~ 408 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYS-IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVK 408 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCee-EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEE
Confidence 5788888765 7777765433322 3446677899999988888888898888 79999999887655445559999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCC
Q 001109 132 VIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESG 211 (1155)
Q Consensus 132 ~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (1155)
++|+|++++++...+.+ |.+|.+.++.. .|.
T Consensus 409 vs~dGK~~vvaNdr~el--~vididngnv~----~id------------------------------------------- 439 (668)
T COG4946 409 VSPDGKKVVVANDRFEL--WVIDIDNGNVR----LID------------------------------------------- 439 (668)
T ss_pred EcCCCcEEEEEcCceEE--EEEEecCCCee----Eec-------------------------------------------
Confidence 99999999999888766 65665554321 000
Q ss_pred cccccccccccceeeEEEEeecccccccccccEEEEEEcC----CeEEEEEccCCeEEEEe
Q 001109 212 FIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYAN----GLIILWDVSEDKVVLVR 268 (1155)
Q Consensus 212 ~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~d----G~I~lWd~~~~~~~~~~ 268 (1155)
.+..+-++. +.|||++ +++|-+.-+ ..|+|+|+..++...+.
T Consensus 440 --kS~~~lItd-----f~~~~ns--------r~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 440 --KSEYGLITD-----FDWHPNS--------RWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred --ccccceeEE-----EEEcCCc--------eeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 001233444 8888874 467776555 47999999999987763
No 290
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=2.5e-05 Score=85.30 Aligned_cols=157 Identities=14% Similarity=0.181 Sum_probs=111.3
Q ss_pred EEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeec
Q 001109 555 IAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVT 634 (1155)
Q Consensus 555 aTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~ 634 (1155)
++.+.+..|-+=|+.++.-+ .+ +....|.++.|...+.++..|..+|.|..+|++....
T Consensus 228 fs~G~sqqv~L~nvetg~~q---sf----------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq-------- 286 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ---SF----------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ-------- 286 (425)
T ss_pred ecccccceeEEEEeeccccc---cc----------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc--------
Confidence 34444666777777766411 11 2335789999999899999999999999999987421
Q ss_pred cCCceEEEecCCCCCceeEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEe
Q 001109 635 ETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSN-FGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVK 713 (1155)
Q Consensus 635 ~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSp-dg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs 713 (1155)
|.|. |... --|.+.||||..-. ++++|.+.+.+|.|++||.+--++-...+...||...-.-+-|.
T Consensus 287 -----------G~~~-~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~ 353 (425)
T KOG2695|consen 287 -----------GNGW-CAQR-LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH 353 (425)
T ss_pred -----------CCCc-ceEE-EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccc
Confidence 1111 1122 34899999999877 88899999999999999998755511122235665433222222
Q ss_pred ecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeee
Q 001109 714 SLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRS 765 (1155)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~ 765 (1155)
.++....+++++.|-..+||.+..|.++.+.|
T Consensus 354 --------------------v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 354 --------------------VKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred --------------------cccccceEEEccCeeEEEEEecccCceeeccC
Confidence 23667889999999999999999999998884
No 291
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=0.0051 Score=71.42 Aligned_cols=109 Identities=13% Similarity=0.052 Sum_probs=70.1
Q ss_pred CCeEEEEEecCCCeEEEEeC---CCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcC
Q 001109 593 ESVSALEFCSVTLNLAIGSS---SGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSN 669 (1155)
Q Consensus 593 ~~V~~lafspdg~~Lasgs~---dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSp 669 (1155)
.+|.+.+|.|.|..+++-+. ..+|.+|.++..... +..+..|. ....+.|.|||
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~---------------------~~lVk~~d--k~~~N~vfwsP 502 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK---------------------PSLVKELD--KKFANTVFWSP 502 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc---------------------hhhhhhhc--ccccceEEEcC
Confidence 38999999999998775443 357889988753211 00111122 23467899999
Q ss_pred CCCEEEEE---eCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeC
Q 001109 670 FGARLAVG---FECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTK 746 (1155)
Q Consensus 670 dg~~LAsG---s~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~ 746 (1155)
.|+++++| |..|.+.++|..-..+.... . ..|. .-+.+.|. |.|+++++++.
T Consensus 503 kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~-~eh~-~at~veWD----------------------PtGRYvvT~ss 557 (698)
T KOG2314|consen 503 KGRFVVVAALVSRRGDLEFYDTDYADLKDTA-S-PEHF-AATEVEWD----------------------PTGRYVVTSSS 557 (698)
T ss_pred CCcEEEEEEecccccceEEEecchhhhhhcc-C-cccc-ccccceEC----------------------CCCCEEEEeee
Confidence 99998875 45688999998743332211 1 1132 34566776 88999999886
Q ss_pred Cce
Q 001109 747 DAH 749 (1155)
Q Consensus 747 Dg~ 749 (1155)
-..
T Consensus 558 ~wr 560 (698)
T KOG2314|consen 558 SWR 560 (698)
T ss_pred hhh
Confidence 443
No 292
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.92 E-value=0.003 Score=72.72 Aligned_cols=111 Identities=13% Similarity=0.042 Sum_probs=78.1
Q ss_pred CCCeEEEEEecCCCeEEEEe--CCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcC
Q 001109 592 SESVSALEFCSVTLNLAIGS--SSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSN 669 (1155)
Q Consensus 592 ~~~V~~lafspdg~~Lasgs--~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSp 669 (1155)
.++|-..+|.|+++.+++.+ ..-.+-+|++..+ .++......=..+-|||
T Consensus 274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----------------------------l~~~~Pe~~rNT~~fsp 325 (561)
T COG5354 274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----------------------------LRFYFPEQKRNTIFFSP 325 (561)
T ss_pred cccceeeeecccCCceeEEecccccceeecccccc----------------------------eEEecCCcccccccccC
Confidence 35999999999999887654 6778889988774 22334445556688999
Q ss_pred CCCEEEEEeCC---CcEEEEecCCccEEE-EeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEe
Q 001109 670 FGARLAVGFEC---SQVAMLDISTFSVLF-ITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMT 745 (1155)
Q Consensus 670 dg~~LAsGs~D---g~V~lWDi~~~~~l~-~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s 745 (1155)
.++++.+++-| |.|-+||..+.-.+. ... + ..-.-+.|+ ||++++.+++
T Consensus 326 ~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~---~--~n~s~~~ws----------------------pd~qF~~~~~ 378 (561)
T COG5354 326 HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN---G--LNTSYCDWS----------------------PDGQFYDTDT 378 (561)
T ss_pred cccEEEEecCCccccceEEeccCCceEEEEEee---c--CCceEeecc----------------------CCceEEEecC
Confidence 99998886655 679999998764443 221 1 122335677 7888887764
Q ss_pred ------CCceEEEEECCC
Q 001109 746 ------KDAHIVVCDSTT 757 (1155)
Q Consensus 746 ------~Dg~I~vwd~~t 757 (1155)
.|..|.|||...
T Consensus 379 ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 379 TSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred CCcccccCcceEEEEecC
Confidence 378899999753
No 293
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.91 E-value=3e-05 Score=99.35 Aligned_cols=186 Identities=11% Similarity=0.135 Sum_probs=126.8
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEcc--CCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeee
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGG--DNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITST 120 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~--~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~ 120 (1155)
..|.++.=+|..-+-.+|+.||.|++|.- ...-+.+.......|+.+.|+.+|+....+..||.+-+|... .+....
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s 2287 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTS 2287 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceec
Confidence 34666777787788889999999999753 222223333345889999999999999999999999999986 444444
Q ss_pred ecCC-CceeEEEEecCCCEEEEEe---CCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccc
Q 001109 121 LPWE-SNITAFSVIFGTSYMYIGD---EYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAF 196 (1155)
Q Consensus 121 l~~~-~~Vtsva~spd~~~l~~G~---~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~ 196 (1155)
.+-| ...+.+.|.. ..+++++ +++++.+|+--.... ...++.
T Consensus 2288 ~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~-----~s~v~~--------------------------- 2333 (2439)
T KOG1064|consen 2288 WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM-----NSLVHT--------------------------- 2333 (2439)
T ss_pred cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc-----cceeee---------------------------
Confidence 5544 4566777765 4455443 467787774222110 001110
Q ss_pred ccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccc
Q 001109 197 NASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLK 276 (1155)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~ 276 (1155)
. |.+.+.. +++-|.. ..|++|+.+|.|.|||++..++...
T Consensus 2334 ------------~------H~~gaT~-----l~~~P~~--------qllisggr~G~v~l~D~rqrql~h~--------- 2373 (2439)
T KOG1064|consen 2334 ------------C------HDGGATV-----LAYAPKH--------QLLISGGRKGEVCLFDIRQRQLRHT--------- 2373 (2439)
T ss_pred ------------e------cCCCceE-----EEEcCcc--------eEEEecCCcCcEEEeehHHHHHHHH---------
Confidence 0 2333344 9999984 5799999999999999987766532
Q ss_pred cccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 277 TEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
. +. |. .-.+|++|+..|+|+||++...
T Consensus 2374 ~--------------------------~~----~~--~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2374 F--------------------------QA----LD--TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred h--------------------------hh----hh--hhheeeccCcccceEEEEcccc
Confidence 0 01 22 3567899999999999999865
No 294
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.86 E-value=0.0019 Score=69.65 Aligned_cols=183 Identities=13% Similarity=0.107 Sum_probs=111.2
Q ss_pred CCeEEEEccCCceEEE----EcCCCCCEEEEEEEc---CCc-EEEEEecCCeEEEEECCCCceeeeecCC-----C--ce
Q 001109 63 DGRIKVIGGDNIEGLL----VSPKQLAFKHLEFLQ---NQG-FLVSISSGNEIQLWDLEARRITSTLPWE-----S--NI 127 (1155)
Q Consensus 63 DG~I~vw~~~~~~~~~----~~~~~~~V~~l~Fs~---dg~-~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-----~--~V 127 (1155)
-|.+.+|+....+... +-.....+..+.|.. +|. .|+-+..+|.|+++..+.......|++- . ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 3678888764432211 111122344444432 333 4556677899999987765555555431 1 13
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCC
Q 001109 128 TAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPP 207 (1155)
Q Consensus 128 tsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 207 (1155)
-++.+++.+.-++++..+|.+.+...+.. .+. . . .++.+
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~--~le-------~--v---------------q~wk~--------------- 163 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEM--VLE-------K--V---------------QTWKV--------------- 163 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEeccee--eee-------e--c---------------ccccc---------------
Confidence 45678899999999999999874432211 110 0 0 00000
Q ss_pred CCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccC-CeEEEEecccccccccccccCCCCC
Q 001109 208 DESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSE-DKVVLVRGSKDLQLKTEIVDDPSKN 286 (1155)
Q Consensus 208 ~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (1155)
+.-+.+- ..|+-..+ +.+.+|++||.+.-||++- ++.+.. . .+
T Consensus 164 --------He~E~Wt-----a~f~~~~p-------nlvytGgDD~~l~~~D~R~p~~~i~~--n----~k---------- 207 (339)
T KOG0280|consen 164 --------HEFEAWT-----AKFSDKEP-------NLVYTGGDDGSLSCWDIRIPKTFIWH--N----SK---------- 207 (339)
T ss_pred --------cceeeee-----eecccCCC-------ceEEecCCCceEEEEEecCCcceeee--c----ce----------
Confidence 1122222 55555443 6899999999999999983 333321 0 00
Q ss_pred CCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 287 AGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
-|...|.|+.-++|++..|+||+.|-.|++||.+..
T Consensus 208 -------------vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 208 -------------VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred -------------eeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 157779999888788999999999999999999864
No 295
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.85 E-value=0.00068 Score=72.05 Aligned_cols=128 Identities=14% Similarity=0.045 Sum_probs=91.1
Q ss_pred CeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCE
Q 001109 594 SVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGAR 673 (1155)
Q Consensus 594 ~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~ 673 (1155)
.+.++++++|++++++-++...|-+|.+.....-. +. .....-++.=.+..||.....
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~-----------~~-----------~~~a~t~D~gF~~S~s~~~~~ 217 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYI-----------EN-----------IYEAPTSDHGFYNSFSENDLQ 217 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCcccee-----------ee-----------eEecccCCCceeeeeccCcce
Confidence 37899999999999999999999999988753210 00 011222334467889999999
Q ss_pred EEEEeCCCcEEEEecCCccEEEEecc--CCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEE
Q 001109 674 LAVGFECSQVAMLDISTFSVLFITDS--LSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIV 751 (1155)
Q Consensus 674 LAsGs~Dg~V~lWDi~~~~~l~~~~~--~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~ 751 (1155)
+|+++.||++.|||++.-........ -..|.+.|..+.|++.+ ++. +|+..-.=+.+.
T Consensus 218 FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g-------------------~lD-LLf~sEhfs~~h 277 (344)
T KOG4532|consen 218 FAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG-------------------LLD-LLFISEHFSRVH 277 (344)
T ss_pred EEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCC-------------------cce-EEEEecCcceEE
Confidence 99999999999999987544322111 12488999999999543 333 455556678899
Q ss_pred EEECCCCceeee
Q 001109 752 VCDSTTGHILFS 763 (1155)
Q Consensus 752 vwd~~tG~~l~~ 763 (1155)
|.|..++.-...
T Consensus 278 v~D~R~~~~~q~ 289 (344)
T KOG4532|consen 278 VVDTRNYVNHQV 289 (344)
T ss_pred EEEcccCceeeE
Confidence 999988765433
No 296
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.84 E-value=7.8e-05 Score=80.14 Aligned_cols=221 Identities=13% Similarity=0.222 Sum_probs=128.0
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCCce---EE----EEcC-----------CCCCEEEEEEEcCCc--EEEEEe
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDNIE---GL----LVSP-----------KQLAFKHLEFLQNQG--FLVSIS 102 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~---~~----~~~~-----------~~~~V~~l~Fs~dg~--~LvS~s 102 (1155)
..|+++-|+-.|.+||+|...|+|.+|+..... .- ++.. -...|..+.|..+++ .++-.+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 468999999999999999999999999764322 21 1110 023677777766654 344456
Q ss_pred cCCeEEEEECCCCcee--e-------------------------eecCC-----------------CceeEEEEecCCCE
Q 001109 103 SGNEIQLWDLEARRIT--S-------------------------TLPWE-----------------SNITAFSVIFGTSY 138 (1155)
Q Consensus 103 ~Dg~I~vWDl~t~~~~--~-------------------------~l~~~-----------------~~Vtsva~spd~~~ 138 (1155)
.|.+|++|.+..+.+- . .+..| -.|++++|..|...
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 7999999998655210 0 00000 13566677666666
Q ss_pred EEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCccccccc
Q 001109 139 MYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIR 218 (1155)
Q Consensus 139 l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (1155)
++++ ++-.|.+|+++..++.+. | ..+.|.. ..
T Consensus 187 ~lSa-DdLrINLWnl~i~D~sFn-----I-----------------------------------VDiKP~n-------me 218 (460)
T COG5170 187 LLSA-DDLRINLWNLEIIDGSFN-----I-----------------------------------VDIKPHN-------ME 218 (460)
T ss_pred eeec-cceeeeeccccccCCceE-----E-----------------------------------EeccCcc-------HH
Confidence 6554 355567777665443221 1 1111100 01
Q ss_pred ccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEE-ecccccccccccccCCCCCCCCCCcccccc
Q 001109 219 SKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLV-RGSKDLQLKTEIVDDPSKNAGHNLSETVSD 297 (1155)
Q Consensus 219 ~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1155)
... +-+++..|+|... +.+.-.++.|.|+|-|++...+-.. ...++.++.. ....+
T Consensus 219 eLt-eVItSaeFhp~~c-------n~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~------v~~~f--------- 275 (460)
T COG5170 219 ELT-EVITSAEFHPEMC-------NVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDG------VDVDF--------- 275 (460)
T ss_pred HHH-HHHhhcccCHhHc-------ceEEEecCCCcEEehhhhhhhhccCchhhhhhccCc------ccchh---------
Confidence 111 1223378999764 5677778899999999985433211 0111111110 00000
Q ss_pred cccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCC
Q 001109 298 NEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAA 336 (1155)
Q Consensus 298 ~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~ 336 (1155)
.++-...|..+.|+ ++|+++++-.. -+|++||+.-..
T Consensus 276 f~eivsSISD~kFs-~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 276 FEEIVSSISDFKFS-DNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred HHHHhhhhcceEEc-CCCcEEEEecc-ceEEEEeccccc
Confidence 11124568889999 99999987654 489999987643
No 297
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.84 E-value=0.0063 Score=72.65 Aligned_cols=74 Identities=12% Similarity=0.070 Sum_probs=52.2
Q ss_pred CEEEEEEEcCCcE-EEEEecC---CeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEE-EeCCCcEEEEEecCCCc
Q 001109 85 AFKHLEFLQNQGF-LVSISSG---NEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYI-GDEYGMVYVLKYDTEEG 158 (1155)
Q Consensus 85 ~V~~l~Fs~dg~~-LvS~s~D---g~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~-G~~dG~V~vw~~d~~~~ 158 (1155)
.+....|+|||+. ++..+.+ ..|.++|+.+++...-....+...+..|+|||+.|+. .+.+|.-.+|.++...+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6778999999985 5544433 5699999998876554445566777889999987654 44566556676666544
No 298
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.84 E-value=0.00029 Score=75.80 Aligned_cols=160 Identities=14% Similarity=0.120 Sum_probs=107.8
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceee
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNL 632 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~ 632 (1155)
.++-+..+|.|.++......- ...+++ +...++. .....++.|++.+..++++..+|.+.+-+.....
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~s--s~~L~~-ls~~ki~--~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~------- 154 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDES--SVHLRG-LSSKKIS--VVEALSLDISTSGTKIFVSDSRGSISGVYETEMV------- 154 (339)
T ss_pred eeeeccccceEEEEeecccee--eeeecc-cchhhhh--heeeeEEEeeccCceEEEEcCCCcEEEEecceee-------
Confidence 466677788888886543321 122221 0000000 0124588999999999999999999844333211
Q ss_pred eccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEecCC-ccEEEEeccCCCCCCCeeEE
Q 001109 633 VTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFG-ARLAVGFECSQVAMLDIST-FSVLFITDSLSNSNSPVLYL 710 (1155)
Q Consensus 633 v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg-~~LAsGs~Dg~V~lWDi~~-~~~l~~~~~~~~h~~~V~sl 710 (1155)
+ +-.+.++.|.-+++..+|+... ..+-+|++|+.+.-||++- ++.+++.. .-|..+|.|+
T Consensus 155 ---------l-------e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~--kvH~~GV~SI 216 (339)
T KOG0280|consen 155 ---------L-------EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS--KVHTSGVVSI 216 (339)
T ss_pred ---------e-------eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc--eeeecceEEE
Confidence 0 1124567899999999998644 5889999999999999994 45555421 2388999988
Q ss_pred EEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC-Cceeee
Q 001109 711 AVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT-GHILFS 763 (1155)
Q Consensus 711 afs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t-G~~l~~ 763 (1155)
.=++ |++..|++|+.|-+|++||... |+.|..
T Consensus 217 ~ss~---------------------~~~~~I~TGsYDe~i~~~DtRnm~kPl~~ 249 (339)
T KOG0280|consen 217 YSSP---------------------PKPTYIATGSYDECIRVLDTRNMGKPLFK 249 (339)
T ss_pred ecCC---------------------CCCceEEEeccccceeeeehhcccCcccc
Confidence 7662 7788999999999999999763 555433
No 299
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=3.4e-05 Score=87.88 Aligned_cols=174 Identities=14% Similarity=0.150 Sum_probs=116.0
Q ss_pred cceeeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccC-------CceEEEEc-CCCCCEEEEEEEcCCcEEEEEecC
Q 001109 33 PRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGD-------NIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSG 104 (1155)
Q Consensus 33 ~~~~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~-------~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~D 104 (1155)
++..+..||...|.+++-=.+-+-+.+++.|.+||+|... +..+.+++ .|+.+|..+-|..+-++++++ |
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 4555667999999998766666677899999999999642 22355555 478899999999997777765 7
Q ss_pred CeEEEEECCCCceeeeecC---CCceeEEEEecC--CCEEEEE-eCCCcEEEEEecCCCceeeccceeccCCceeeecee
Q 001109 105 NEIQLWDLEARRITSTLPW---ESNITAFSVIFG--TSYMYIG-DEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHL 178 (1155)
Q Consensus 105 g~I~vWDl~t~~~~~~l~~---~~~Vtsva~spd--~~~l~~G-~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~ 178 (1155)
+.|.+||.--++++....+ ++.++.+..-++ ..++..| +...+|+++ |.+.+.-. -.
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~--DaRsce~~-----~E---------- 866 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLF--DARSCEWT-----CE---------- 866 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheee--ecccccce-----ee----------
Confidence 8999999988888775543 355555544444 4444445 566778776 44332111 00
Q ss_pred EeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEE
Q 001109 179 LLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWD 258 (1155)
Q Consensus 179 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd 258 (1155)
+++- ++.+ ... .+.+++..|. | +++++|-.+|.|.+.|
T Consensus 867 ------------------------~kVc-na~~----Pna-----~~R~iaVa~~--G------N~lAa~LSnGci~~LD 904 (1034)
T KOG4190|consen 867 ------------------------LKVC-NAPG----PNA-----LTRAIAVADK--G------NKLAAALSNGCIAILD 904 (1034)
T ss_pred ------------------------EEec-cCCC----Cch-----heeEEEeccC--c------chhhHHhcCCcEEEEe
Confidence 0000 0100 011 2234777776 5 7899999999999999
Q ss_pred ccCCeEEEE
Q 001109 259 VSEDKVVLV 267 (1155)
Q Consensus 259 ~~~~~~~~~ 267 (1155)
.++|+++..
T Consensus 905 aR~G~vINs 913 (1034)
T KOG4190|consen 905 ARNGKVINS 913 (1034)
T ss_pred cCCCceecc
Confidence 999998754
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.00034 Score=84.27 Aligned_cols=190 Identities=12% Similarity=0.152 Sum_probs=127.8
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeec
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLP 122 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~ 122 (1155)
..++|+||+ ++.||-|+.+|.|++++.++.- .....|... ..+|.+++|||.||+|.|-.+-+.+...++.
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence 357888887 5899999999999999876643 222222221 5678999999999999999999999999999
Q ss_pred CCCceeEEEEecC-----CCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccc
Q 001109 123 WESNITAFSVIFG-----TSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFN 197 (1155)
Q Consensus 123 ~~~~Vtsva~spd-----~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ 197 (1155)
++-++.+++++|+ .+.+++|+..| +.+. .- . |.-....+.
T Consensus 111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~--er-~-------wlgnk~~v~------------------------ 155 (846)
T KOG2066|consen 111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLS--ER-N-------WLGNKDSVV------------------------ 155 (846)
T ss_pred cCCcceeEEeccchhhhhhhheeecCcce-EEEe--hh-h-------hhcCcccee------------------------
Confidence 9999999999998 55788898888 4332 11 0 100000000
Q ss_pred cceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccccccc
Q 001109 198 ASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKT 277 (1155)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~ 277 (1155)
.....++|.+ +.|.. +++|=+..+| |+++|..+++.+.....
T Consensus 156 ---------------l~~~eG~I~~-----i~W~g----------~lIAWand~G-v~vyd~~~~~~l~~i~~------- 197 (846)
T KOG2066|consen 156 ---------------LSEGEGPIHS-----IKWRG----------NLIAWANDDG-VKVYDTPTRQRLTNIPP------- 197 (846)
T ss_pred ---------------eecCccceEE-----EEecC----------cEEEEecCCC-cEEEeccccceeeccCC-------
Confidence 0001345555 88864 4677777666 68999998887654111
Q ss_pred ccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 278 EIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
+. ...+ .+.-...++|. +...|+.|..| +|++..++.
T Consensus 198 ------p~--------~~~R---~e~fpphl~W~--~~~~LVIGW~d-~v~i~~I~~ 234 (846)
T KOG2066|consen 198 ------PS--------QSVR---PELFPPHLHWQ--DEDRLVIGWGD-SVKICSIKK 234 (846)
T ss_pred ------CC--------CCCC---cccCCCceEec--CCCeEEEecCC-eEEEEEEec
Confidence 00 0000 12334678996 66778888887 788888873
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.71 E-value=0.00011 Score=56.00 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=30.1
Q ss_pred CCCCCeEEEEEecCCCeEEEEeCCCeEEEEE
Q 001109 590 TESESVSALEFCSVTLNLAIGSSSGLVWLYN 620 (1155)
Q Consensus 590 gh~~~V~~lafspdg~~Lasgs~dG~V~lwd 620 (1155)
+|..+|++|+|+|++.+|++|+.|+.|++||
T Consensus 9 ~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 8889999999999999999999999999997
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.62 E-value=0.019 Score=63.42 Aligned_cols=192 Identities=19% Similarity=0.147 Sum_probs=114.2
Q ss_pred EEEEcC-CCCEEEEEEcCCeEEEEccCCceEEE-EcCCCCCEEEEEEE-cCCcEEEEEecCCeEEEEECCCCceee--ee
Q 001109 47 ILAFDH-VQSLLAIGTQDGRIKVIGGDNIEGLL-VSPKQLAFKHLEFL-QNQGFLVSISSGNEIQLWDLEARRITS--TL 121 (1155)
Q Consensus 47 ~lafsp-~g~lLAsgs~DG~I~vw~~~~~~~~~-~~~~~~~V~~l~Fs-~dg~~LvS~s~Dg~I~vWDl~t~~~~~--~l 121 (1155)
..+|++ +|.++.+-...++|..|+..+.+... ..+. ...+.+. ++ +.|+.+..++ +.++|+.+++... ..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG---PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS---EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC---CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578998 88888888889999999988776543 3322 6777888 56 5666666544 4555999986433 33
Q ss_pred c----CCCceeEEEEecCCCEEEEEeCCCc------EEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccc
Q 001109 122 P----WESNITAFSVIFGTSYMYIGDEYGM------VYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREK 191 (1155)
Q Consensus 122 ~----~~~~Vtsva~spd~~~l~~G~~dG~------V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~ 191 (1155)
. .....+.++++|+|++.++-..... =.||.++.. ++.....
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~--------------------------- 130 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA--------------------------- 130 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE---------------------------
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe---------------------------
Confidence 2 1256889999999995444332211 134555554 2221000
Q ss_pred cccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEE-EEEcCCeEEEEEccCCe--EEEEe
Q 001109 192 GKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLL-LVYANGLIILWDVSEDK--VVLVR 268 (1155)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~ll-sg~~dG~I~lWd~~~~~--~~~~~ 268 (1155)
. ......+ |+|+|+. +.|+ +-+..+.|..+++.... +...+
T Consensus 131 ~-----------------------~~~~pNG-----i~~s~dg--------~~lyv~ds~~~~i~~~~~~~~~~~~~~~~ 174 (246)
T PF08450_consen 131 D-----------------------GLGFPNG-----IAFSPDG--------KTLYVADSFNGRIWRFDLDADGGELSNRR 174 (246)
T ss_dssp E-----------------------EESSEEE-----EEEETTS--------SEEEEEETTTTEEEEEEEETTTCCEEEEE
T ss_pred c-----------------------Ccccccc-----eEECCcc--------hheeecccccceeEEEeccccccceeeee
Confidence 0 0111223 8999984 3454 45567888888886322 21110
Q ss_pred cccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcC
Q 001109 269 GSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLR 333 (1155)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~ 333 (1155)
.. ..+.. ..+..-.+++. .+|+..++....+.|.+++..
T Consensus 175 ~~--~~~~~-----------------------~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 175 VF--IDFPG-----------------------GPGYPDGLAVD-SDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EE--EE-SS-----------------------SSCEEEEEEEB-TTS-EEEEEETTTEEEEEETT
T ss_pred eE--EEcCC-----------------------CCcCCCcceEc-CCCCEEEEEcCCCEEEEECCC
Confidence 00 00000 01235678998 899998888889999999987
No 303
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.56 E-value=0.00043 Score=73.30 Aligned_cols=164 Identities=14% Similarity=0.147 Sum_probs=97.3
Q ss_pred CcceeeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEE-----EEEEEcCCcEEEEE-----
Q 001109 32 DPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFK-----HLEFLQNQGFLVSI----- 101 (1155)
Q Consensus 32 ~~~~~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~-----~l~Fs~dg~~LvS~----- 101 (1155)
++...+. -|.+...+-+.+--+..+++|..||.+-+++.+... ...++.++. .......+..+.+.
T Consensus 80 ~~~~~~a-~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~---~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~ 155 (319)
T KOG4714|consen 80 DPFKVLA-KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDL---ALMSRIPSIHSGSASRKICRHGNSILSGGCGNW 155 (319)
T ss_pred Cceeeee-ccCCCCCcccccccCCceEecCCCceEEEEechHHH---hhhhhcccccccccccceeecccEEecCCcceE
Confidence 3444443 233344444555567889999999999999876521 111111111 11122223333332
Q ss_pred ecCCeEEEEECCCCce-eeeecCCCceeEEEEecCCC-EEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeE
Q 001109 102 SSGNEIQLWDLEARRI-TSTLPWESNITAFSVIFGTS-YMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLL 179 (1155)
Q Consensus 102 s~Dg~I~vWDl~t~~~-~~~l~~~~~Vtsva~spd~~-~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 179 (1155)
..-+..+.|+++-... +...+.-..|++++.+|.-+ .+++|+++|.+-+|++.... .|...+.
T Consensus 156 n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---------~p~S~l~------ 220 (319)
T KOG4714|consen 156 NAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---------MPVSLLK------ 220 (319)
T ss_pred eeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc---------chHHHHH------
Confidence 2224466777764432 22222234599999998755 67789999999999776531 1111000
Q ss_pred eeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEc
Q 001109 180 LEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDV 259 (1155)
Q Consensus 180 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~ 259 (1155)
. +..+++. +-|||..+ ..|+++++||.+..||.
T Consensus 221 ------------a-----------------------hk~~i~e-----V~FHpk~p-------~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 221 ------------A-----------------------HKAEIWE-----VHFHPKNP-------EHLFTCSEDGSLWHWDA 253 (319)
T ss_pred ------------H-----------------------hhhhhhh-----eeccCCCc-------hheeEecCCCcEEEEcC
Confidence 0 2345666 99999875 57999999999999998
Q ss_pred cC
Q 001109 260 SE 261 (1155)
Q Consensus 260 ~~ 261 (1155)
.+
T Consensus 254 s~ 255 (319)
T KOG4714|consen 254 ST 255 (319)
T ss_pred CC
Confidence 75
No 304
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.0015 Score=77.97 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=96.6
Q ss_pred cccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccC
Q 001109 545 AEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKS 624 (1155)
Q Consensus 545 ~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~ 624 (1155)
+++...+..++-|+.-|.+.+++...+.++. +.. .+-...+.....+++..++|.|+..|.|.+|.+...
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~---------~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKN---------EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhc-ccc---------cCccceEEEEEecchhHhhhhhcCCceEEeehhhcc
Confidence 3567778899999999999999988776421 111 122346677789999999999999999999998773
Q ss_pred ccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCc-cEEEEeccCCCC
Q 001109 625 SNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTF-SVLFITDSLSNS 703 (1155)
Q Consensus 625 ~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~-~~l~~~~~~~~h 703 (1155)
.. ... +++. .. . ..|...|||++||+|+..|-+|...|.|.+-.+... ..+...+.+-.-
T Consensus 109 ~p-~~~---------~~~t-~~-----d---~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ 169 (726)
T KOG3621|consen 109 LP-RDL---------DYVT-PC-----D---KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE 169 (726)
T ss_pred CC-Ccc---------eeec-cc-----c---ccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeecc
Confidence 21 111 1110 00 0 238889999999999999999999999998888762 111111111224
Q ss_pred CCCeeEEEEe
Q 001109 704 NSPVLYLAVK 713 (1155)
Q Consensus 704 ~~~V~slafs 713 (1155)
.++|..|.+.
T Consensus 170 ds~IVQlD~~ 179 (726)
T KOG3621|consen 170 DSEIVQLDYL 179 (726)
T ss_pred CcceEEeecc
Confidence 5566666665
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.52 E-value=0.0085 Score=65.45 Aligned_cols=107 Identities=13% Similarity=0.146 Sum_probs=70.9
Q ss_pred CCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeee-cCC----Cc
Q 001109 52 HVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTL-PWE----SN 126 (1155)
Q Consensus 52 p~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l-~~~----~~ 126 (1155)
+++.++.+++.++.|..|+..+++.+.......++...... +++.++.++.++.|..+|..+|+.+.+. ... ..
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee-cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 35566777789999999999877777655433332222333 3456777778899999999999998874 322 11
Q ss_pred eeEEEEecCCCEEEEEeCCCcEEEEEecCCCceee
Q 001109 127 ITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLI 161 (1155)
Q Consensus 127 Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~ 161 (1155)
........++..++++..+|.|.. +|..++++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~--~d~~tG~~~ 145 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVA--LDPKTGKLL 145 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEE--EETTTTEEE
T ss_pred ccccCceEecCEEEEEeccCcEEE--EecCCCcEE
Confidence 223344445888999998897744 566666654
No 306
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.52 E-value=0.0047 Score=65.92 Aligned_cols=201 Identities=12% Similarity=0.072 Sum_probs=122.3
Q ss_pred EEEEcCCC-----CEEEEEEcCCeEEEEccCCceEEEEc--CCCCCE---EEEEEEcCCcEEEEEecCCeEEEEECCCCc
Q 001109 47 ILAFDHVQ-----SLLAIGTQDGRIKVIGGDNIEGLLVS--PKQLAF---KHLEFLQNQGFLVSISSGNEIQLWDLEARR 116 (1155)
Q Consensus 47 ~lafsp~g-----~lLAsgs~DG~I~vw~~~~~~~~~~~--~~~~~V---~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~ 116 (1155)
-+.|-|.. .+||.|+.-|...+|...+.+..... .+...| +..+-+ .-.+..++.|.++++.+++-+.
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~--~~~~~i~sndht~k~~~~~~~s 149 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL--KFPLNIASNDHTGKTMVVSGDS 149 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc--ccceeeccCCcceeEEEEecCc
Confidence 36677742 58999999999999987654433221 111111 111111 2246678889999999987664
Q ss_pred eeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccc
Q 001109 117 ITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAA 195 (1155)
Q Consensus 117 ~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~ 195 (1155)
.-..+... -.+.++++++|++++++-++...|..+.+|.+...+. .
T Consensus 150 ~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~-------~-------------------------- 196 (344)
T KOG4532|consen 150 NKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIE-------N-------------------------- 196 (344)
T ss_pred ccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceee-------e--------------------------
Confidence 43222222 2378999999999999988888887776666542221 0
Q ss_pred cccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccccc
Q 001109 196 FNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQL 275 (1155)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~ 275 (1155)
+|.-++ ...-.. ..|+..+ .++|+++.||++.|||++........
T Consensus 197 ------~~~a~t---------~D~gF~-----~S~s~~~--------~~FAv~~Qdg~~~I~DVR~~~tpm~~------- 241 (344)
T KOG4532|consen 197 ------IYEAPT---------SDHGFY-----NSFSEND--------LQFAVVFQDGTCAIYDVRNMATPMAE------- 241 (344)
T ss_pred ------eEeccc---------CCCcee-----eeeccCc--------ceEEEEecCCcEEEEEecccccchhh-------
Confidence 000011 111122 5566553 46999999999999999865443210
Q ss_pred ccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCC--eEEEEEcCCcEEEEEcCCCC
Q 001109 276 KTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGS--VLAVGYVDGDILLWNLRAAA 336 (1155)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~--~lasg~~DG~I~lWd~~s~~ 336 (1155)
+. +.. .+|.+.+..+.|+ +-|. .|...-.=+.+.+-|+++..
T Consensus 242 --~s-----str-----------p~hnGa~R~c~Fs-l~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 242 --IS-----STR-----------PHHNGAFRVCRFS-LYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred --hc-----ccC-----------CCCCCceEEEEec-CCCcceEEEEecCcceEEEEEcccCc
Confidence 00 000 1268899999998 7664 34434344678888887764
No 307
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.48 E-value=0.0003 Score=83.31 Aligned_cols=123 Identities=16% Similarity=0.161 Sum_probs=91.9
Q ss_pred eeeccCCCCCceEEEEcCCC-CEEEEEEcCCeEEEEccCCceEEEEc--CCCCCEEEEEEEcCCcEEEEEecCCeEEEEE
Q 001109 35 VTLHYGIPSTASILAFDHVQ-SLLAIGTQDGRIKVIGGDNIEGLLVS--PKQLAFKHLEFLQNQGFLVSISSGNEIQLWD 111 (1155)
Q Consensus 35 ~~~~~G~~~~vs~lafsp~g-~lLAsgs~DG~I~vw~~~~~~~~~~~--~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWD 111 (1155)
+...+||...++.+-|.|.. ..||+++.|-.|..|+.......+-. .-...-..|.|+--.+.+++.+..+.|.+||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 33457999999999999975 59999999999999998765433221 1233455677776556677778889999999
Q ss_pred CCCC-ceeeeecCC-CceeEEEEecC-CCEEEEEeCCCcEEEEEecCCC
Q 001109 112 LEAR-RITSTLPWE-SNITAFSVIFG-TSYMYIGDEYGMVYVLKYDTEE 157 (1155)
Q Consensus 112 l~t~-~~~~~l~~~-~~Vtsva~spd-~~~l~~G~~dG~V~vw~~d~~~ 157 (1155)
+..| ..+++++++ ..|+.++|..- -..+.+.+.||+|++|+|+...
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 9876 567788876 66777777543 2345677889999999998643
No 308
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.47 E-value=0.055 Score=64.32 Aligned_cols=107 Identities=12% Similarity=0.052 Sum_probs=68.0
Q ss_pred CCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 001109 604 TLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQV 683 (1155)
Q Consensus 604 g~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V 683 (1155)
+..+.+++.+|.+..+|..+++. +| ...+. ....++ .++..|.+++.+|.|
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~-------------~W----------~~~~~----~~~~~~--~~~~~vy~~~~~g~l 306 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQI-------------VW----------KREYG----SVNDFA--VDGGRIYLVDQNDRV 306 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCE-------------EE----------eecCC----CccCcE--EECCEEEEEcCCCeE
Confidence 44566677889888888876532 11 11111 111122 245677788899999
Q ss_pred EEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeee
Q 001109 684 AMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFS 763 (1155)
Q Consensus 684 ~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~ 763 (1155)
..+|..+++.+.+...+.+ ....+.+. .+..|++++.||.|.++|..+|+++..
T Consensus 307 ~ald~~tG~~~W~~~~~~~--~~~~sp~v------------------------~~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 307 YALDTRGGVELWSQSDLLH--RLLTAPVL------------------------YNGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred EEEECCCCcEEEcccccCC--CcccCCEE------------------------ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 9999999988765322110 00111111 245688899999999999999999988
Q ss_pred ee
Q 001109 764 RS 765 (1155)
Q Consensus 764 ~~ 765 (1155)
..
T Consensus 361 ~~ 362 (394)
T PRK11138 361 QK 362 (394)
T ss_pred EE
Confidence 74
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.0041 Score=75.75 Aligned_cols=106 Identities=23% Similarity=0.319 Sum_probs=76.1
Q ss_pred EEcCCCCEEEEEEcCCeEEEEccCCce--EEEEcCCCCCEEEEEEEcCCcEEEEEecCC-----eEEEEECCCC------
Q 001109 49 AFDHVQSLLAIGTQDGRIKVIGGDNIE--GLLVSPKQLAFKHLEFLQNQGFLVSISSGN-----EIQLWDLEAR------ 115 (1155)
Q Consensus 49 afsp~g~lLAsgs~DG~I~vw~~~~~~--~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg-----~I~vWDl~t~------ 115 (1155)
.+++.+..+|.|+.+|.|.+++..-.. ....+++. -|..|....+..+|++++.|. .++|||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~s-iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQS-IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccceeeehheecchh-hhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 578999999999999999888764322 11112222 466666666668999998764 4999999743
Q ss_pred ceeeee-----cC---CCceeEEEEecCCCEEEEEeCCCcEEEEEecC
Q 001109 116 RITSTL-----PW---ESNITAFSVIFGTSYMYIGDEYGMVYVLKYDT 155 (1155)
Q Consensus 116 ~~~~~l-----~~---~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~ 155 (1155)
.+++.+ +. +.++++++++.+-..+|+|-.+|.|....-|.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi 156 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDI 156 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcc
Confidence 233211 21 36789999999999999999999987765554
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.0037 Score=75.67 Aligned_cols=142 Identities=15% Similarity=0.150 Sum_probs=100.5
Q ss_pred cEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcccccee
Q 001109 552 RLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLN 631 (1155)
Q Consensus 552 ~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~ 631 (1155)
+.++-|..+|.|++.+....- . ..+ .|+.. .-+|.++|+++.||.|.|..+.+....
T Consensus 50 ~~~~~GtH~g~v~~~~~~~~~-~--~~~----------~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~---- 106 (846)
T KOG2066|consen 50 KFFALGTHRGAVYLTTCQGNP-K--TNF----------DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI---- 106 (846)
T ss_pred ceeeeccccceEEEEecCCcc-c--ccc----------ccccc------ccCCceEEEecCCCcEEEeeccCCccc----
Confidence 478889999999999876542 1 011 22222 568999999999999999887764321
Q ss_pred eeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCC-----CCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCC
Q 001109 632 LVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNF-----GARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSP 706 (1155)
Q Consensus 632 ~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpd-----g~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~ 706 (1155)
.+ .....++.+|+++|| .+++++|+.-| +.+..-.=-.-..+. .++.-.++
T Consensus 107 ---------------------~~-~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~ 162 (846)
T KOG2066|consen 107 ---------------------TQ-YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGP 162 (846)
T ss_pred ---------------------ee-EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccc
Confidence 01 123568999999998 67899999999 766653210000000 12345689
Q ss_pred eeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeee
Q 001109 707 VLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRS 765 (1155)
Q Consensus 707 V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~ 765 (1155)
|.++.|. |++++-++.+| |+|+|..+++.|+..+
T Consensus 163 I~~i~W~------------------------g~lIAWand~G-v~vyd~~~~~~l~~i~ 196 (846)
T KOG2066|consen 163 IHSIKWR------------------------GNLIAWANDDG-VKVYDTPTRQRLTNIP 196 (846)
T ss_pred eEEEEec------------------------CcEEEEecCCC-cEEEeccccceeeccC
Confidence 9999998 78888888777 8999999999988873
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0043 Score=69.62 Aligned_cols=93 Identities=15% Similarity=0.140 Sum_probs=75.0
Q ss_pred ccCCCcCCCCcceeeccCCCCCceEEEEcCCCC-EEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCc-EEEE
Q 001109 23 KENLTSKDFDPRVTLHYGIPSTASILAFDHVQS-LLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQG-FLVS 100 (1155)
Q Consensus 23 ~~~l~~~~~~~~~~~~~G~~~~vs~lafsp~g~-lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~-~LvS 100 (1155)
...|.+.+|.+-+ +..++...|..|||||..+ +|..++.+..|+|.|..+..+........++++++|.-|.. ++.+
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEE
Confidence 3445566777655 5567888899999999988 89999999999999998877766655557899999988764 6778
Q ss_pred EecCCeEEEEECCCCc
Q 001109 101 ISSGNEIQLWDLEARR 116 (1155)
Q Consensus 101 ~s~Dg~I~vWDl~t~~ 116 (1155)
|...|-|.|+|++..+
T Consensus 254 Gl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPE 269 (463)
T ss_pred eccCceEEEEEccCCC
Confidence 8889999999998654
No 312
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.40 E-value=0.014 Score=63.47 Aligned_cols=192 Identities=14% Similarity=0.066 Sum_probs=113.9
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCC------CeEEEEeCCCeEEEE
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVT------LNLAIGSSSGLVWLY 619 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg------~~Lasgs~dG~V~lw 619 (1155)
+++||+.+||-+...|+|+++|+.+.. ++.+...... ...-+.+|..|.|.+-. ..|.+-+-+|.++-|
T Consensus 50 ~WSpD~tlLa~a~S~G~i~vfdl~g~~---lf~I~p~~~~--~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 50 AWSPDCTLLAYAESTGTIRVFDLMGSE---LFVIPPAMSF--PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred EECCCCcEEEEEcCCCeEEEEecccce---eEEcCccccc--CCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 789999999999999999999998755 3455443211 11223478888886643 135555567777777
Q ss_pred EeccCccccceeeeccCCceEEEecCCCCCceeEE--eec-CCCCeEEEEEcCCCCEEEEEeCCC-----------cEEE
Q 001109 620 NLIKSSNEETLNLVTETGKEVHILPGGDGPQCKAL--FSV-LNSPICNLKFSNFGARLAVGFECS-----------QVAM 685 (1155)
Q Consensus 620 d~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~--l~~-h~~~VtslafSpdg~~LAsGs~Dg-----------~V~l 685 (1155)
-+..+.. .+++-... |.. ++..|+++.|.|..++|.+|+.-. -+.-
T Consensus 125 ~vs~gt~--------------------q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLta 184 (282)
T PF15492_consen 125 LVSVGTN--------------------QGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTA 184 (282)
T ss_pred EEEcccC--------------------CcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceE
Confidence 7643211 11121122 223 477899999999999888776522 1556
Q ss_pred EecCCccEEEEeccCCCCCCCeeE----EEEeecCCC--CccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCc
Q 001109 686 LDISTFSVLFITDSLSNSNSPVLY----LAVKSLSDT--SNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGH 759 (1155)
Q Consensus 686 WDi~~~~~l~~~~~~~~h~~~V~s----lafs~~~~~--~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~ 759 (1155)
|-+-+...-+.. + ......+.. ..|...... -......++..-+++..|||..|++...+|.|.+|++.+=+
T Consensus 185 WRiL~~~Pyyk~-v-~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 185 WRILSDSPYYKQ-V-TSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred EEEcCCCCcEEE-c-cccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 666554433321 1 111122211 111100000 00012234445567888999999999999999999988755
Q ss_pred eeeee
Q 001109 760 ILFSR 764 (1155)
Q Consensus 760 ~l~~~ 764 (1155)
++..-
T Consensus 263 ~~~~W 267 (282)
T PF15492_consen 263 LQRSW 267 (282)
T ss_pred hhccc
Confidence 55443
No 313
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.011 Score=71.55 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=56.8
Q ss_pred eeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCC
Q 001109 225 VEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKE 304 (1155)
Q Consensus 225 v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1155)
+++++|||... .|+.|.+-|.+.+|...+.+.-.+ ...|..+
T Consensus 62 atSLCWHpe~~--------vLa~gwe~g~~~v~~~~~~e~htv------------------------------~~th~a~ 103 (1416)
T KOG3617|consen 62 ATSLCWHPEEF--------VLAQGWEMGVSDVQKTNTTETHTV------------------------------VETHPAP 103 (1416)
T ss_pred hhhhccChHHH--------HHhhccccceeEEEecCCceeeee------------------------------ccCCCCC
Confidence 34499999753 488899999999999876654432 0125788
Q ss_pred ccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 305 ISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 305 V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
|.-+.|+ ++|..++|+..=|.+.+|...-
T Consensus 104 i~~l~wS-~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 104 IQGLDWS-HDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ceeEEec-CCCCeEEEcCCCceeEEEEeee
Confidence 9999999 9999999999999999998763
No 314
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.32 E-value=0.00063 Score=72.06 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=63.0
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCc
Q 001109 661 PICNLKFSNFGA-RLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKE 739 (1155)
Q Consensus 661 ~VtslafSpdg~-~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~ 739 (1155)
.|++++-.|.-+ .+++|+.||.|.|||.+...-. ...+..|..+++.+-|.+ .++.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p--~S~l~ahk~~i~eV~FHp---------------------k~p~ 237 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP--VSLLKAHKAEIWEVHFHP---------------------KNPE 237 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccch--HHHHHHhhhhhhheeccC---------------------CCch
Confidence 399999998655 6789999999999999986332 233567999999999984 3456
Q ss_pred EEEEEeCCceEEEEECCCCceeee
Q 001109 740 TLFFMTKDAHIVVCDSTTGHILFS 763 (1155)
Q Consensus 740 ~L~s~s~Dg~I~vwd~~tG~~l~~ 763 (1155)
.|+++++||.+.-||..+ +.|..
T Consensus 238 ~Lft~sedGslw~wdas~-~~l~i 260 (319)
T KOG4714|consen 238 HLFTCSEDGSLWHWDAST-TFLSI 260 (319)
T ss_pred heeEecCCCcEEEEcCCC-ceEEe
Confidence 799999999999999775 55553
No 315
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.013 Score=71.00 Aligned_cols=315 Identities=17% Similarity=0.168 Sum_probs=164.0
Q ss_pred ccCCcCcEEEEEE----CCCcEEEEeC-CCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEE
Q 001109 546 EDYLVERLYIAGY----RDGSTRIWDA-TYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYN 620 (1155)
Q Consensus 546 ~~s~~~~lLaTgs----~DgtVrlWD~-~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd 620 (1155)
.++|...++|.++ .-|+|.|+-- ..++. ..+ ....+++++|+|.--.||+|=.-|.+.+|.
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr----~Vt----------~P~hatSLCWHpe~~vLa~gwe~g~~~v~~ 87 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFADTGEPQR----DVT----------YPVHATSLCWHPEEFVLAQGWEMGVSDVQK 87 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEecCCCCCc----ccc----------cceehhhhccChHHHHHhhccccceeEEEe
Confidence 5566666676664 3577888732 22221 010 112467899999999999999999999998
Q ss_pred eccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccC
Q 001109 621 LIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSL 700 (1155)
Q Consensus 621 ~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~ 700 (1155)
..+.+. + ..-..|+.+|+-|.|||+|..|.++..-|.|.+|....-..+.....+
T Consensus 88 ~~~~e~--------------h-----------tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~ 142 (1416)
T KOG3617|consen 88 TNTTET--------------H-----------TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIM 142 (1416)
T ss_pred cCCcee--------------e-----------eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhh
Confidence 765321 1 122569999999999999999999999999999987631111111111
Q ss_pred C-CCCCCeeEEEEeecCCCCcc-----------------ccCCCCCCCC----CCCCCCCcEEEEEeCCceEEEEECCCC
Q 001109 701 S-NSNSPVLYLAVKSLSDTSNL-----------------TISPKDSDIN----SSNDTKKETLFFMTKDAHIVVCDSTTG 758 (1155)
Q Consensus 701 ~-~h~~~V~slafs~~~~~~~~-----------------~~~~~~~~~~----~~~~pd~~~L~s~s~Dg~I~vwd~~tG 758 (1155)
. ....-++-.+|-.......+ .+.-+.+... -+-.|+|..++.++++|+|.-.|. .|
T Consensus 143 ~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq-~g 221 (1416)
T KOG3617|consen 143 QHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQ-NG 221 (1416)
T ss_pred hhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcC-CC
Confidence 0 11233455555321110000 0000000000 123488999999999999999984 35
Q ss_pred ceeeee--------ecccC-CCceEEE-------EEEeCCCCCCcccccccccCCCCCCCCCCCCCcCCCCCCCCCcccc
Q 001109 759 HILFSR--------SIHHQ-ESNAIYM-------CIIEGGNFFSETSSEKQSLNTPQNSKATSEPDQTNANTGSDPVVAE 822 (1155)
Q Consensus 759 ~~l~~~--------~~~~~-~~~al~~-------~~ld~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1155)
++.... -++++ +...+-| ++....+.......++.+- +..-+. -.+.+.++.++-..
T Consensus 222 ~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sg------k~Ggrq-GgiA~sEssGvLr~ 294 (1416)
T KOG3617|consen 222 RQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSG------KLGGRQ-GGIACSESSGVLRK 294 (1416)
T ss_pred cEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhcc------ccCCcc-CccccccccccccC
Confidence 544322 12333 3333322 2332332211111111111 111110 11122222221110
Q ss_pred cccccccchhhhhc-cceEEEEEeccceeeeccccccccccceeEEee--cc-CC--ccceeeeeeCCceeEEEEEeecC
Q 001109 823 LETSTEATYLERIF-EHLFVLLCYEDALWLYPLKSLIQGHTDSIHKVN--LL-KP--CCWTTSFKKNEKECGLVVLYQTG 896 (1155)
Q Consensus 823 ~~~~~~~~~~~~~~-~~~~~llc~e~~~~~ysl~~~~qg~~~~~~k~k--~~-~~--~~~~~~~~~~~~~~~l~~~~~~G 896 (1155)
...+..+. +....+..+++.++++-.-. ||+-..-+++. |+ .| --|+ +..-....|-|.+.+=|
T Consensus 295 ------~eKyg~e~ge~~~c~cY~~~~~~l~agt~--~gnv~~w~~v~~~f~g~p~~d~w~--l~~~~e~~g~I~~i~Wg 364 (1416)
T KOG3617|consen 295 ------SEKYGLELGEGILCMCYGEKEIRLWAGTK--EGNVTIWLDVNKGFQGDPTIDVWT--LNGKRESLGKISLIRWG 364 (1416)
T ss_pred ------CcchhhhcCCceEEEEEeccceEEEeccc--CCcEEEeeecCccccCCCCcceEE--ecCchhhccceEEEEec
Confidence 11122222 34444455678899998888 78766666632 33 33 2222 22212334445555555
Q ss_pred cEE----EeecCCcccccccccccc
Q 001109 897 DIE----IRVLPYLEVGGQTSLMSL 917 (1155)
Q Consensus 897 ~ie----irslp~l~~~~~~s~~~~ 917 (1155)
-|. +-++.++-+++|.||+..
T Consensus 365 ~~k~~~avn~~~~v~ll~E~~l~~~ 389 (1416)
T KOG3617|consen 365 PIKSTAAVNTEEDVVLLGENSLTVK 389 (1416)
T ss_pred cccchhhhhhhhheeeeccCchHHH
Confidence 432 235667778888888653
No 316
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.25 E-value=0.0088 Score=70.86 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=61.6
Q ss_pred CCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCC
Q 001109 592 SESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFG 671 (1155)
Q Consensus 592 ~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg 671 (1155)
...|.+.+++|+...|+.|..||+|++||...+.. .+..+.-..+.++|+|+|
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t---------------------------~~~ka~~~P~~iaWHp~g 311 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT---------------------------LLAKAEFIPTLIAWHPDG 311 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCee---------------------------eeeeecccceEEEEcCCC
Confidence 35899999999999999999999999999876421 112223346889999999
Q ss_pred CEEEEEeCCCcEEEEecCCccE
Q 001109 672 ARLAVGFECSQVAMLDISTFSV 693 (1155)
Q Consensus 672 ~~LAsGs~Dg~V~lWDi~~~~~ 693 (1155)
..+++|+..|.+.+||+.-..+
T Consensus 312 ai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 312 AIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred cEEEEEcCCceEEEEEeecCcc
Confidence 9999999999999999975444
No 317
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.25 E-value=0.00039 Score=76.18 Aligned_cols=114 Identities=18% Similarity=0.124 Sum_probs=88.0
Q ss_pred CCCceEEEEcCCCCEEEEEEcCCeEEEEccCC-----ceEEEEcCCCCCEEEEEEEc-CCcEEEEEecCCeEEEEECCCC
Q 001109 42 PSTASILAFDHVQSLLAIGTQDGRIKVIGGDN-----IEGLLVSPKQLAFKHLEFLQ-NQGFLVSISSGNEIQLWDLEAR 115 (1155)
Q Consensus 42 ~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~-----~~~~~~~~~~~~V~~l~Fs~-dg~~LvS~s~Dg~I~vWDl~t~ 115 (1155)
.+.|-++-|.-.+.++..|..+|.|.++|... +.+...+-|...|++++... ++.+|++.+-+|+|++||++.-
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT 331 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence 45688888999999999999999999998643 33333334667788887776 6789999999999999999866
Q ss_pred ce---eeeecCCC---ceeEEEEecCCCEEEEEeCCCcEEEEEecC
Q 001109 116 RI---TSTLPWES---NITAFSVIFGTSYMYIGDEYGMVYVLKYDT 155 (1155)
Q Consensus 116 ~~---~~~l~~~~---~Vtsva~spd~~~l~~G~~dG~V~vw~~d~ 155 (1155)
++ +.++++|. .-.-+.+.+....++++++|--.++|.++.
T Consensus 332 K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 332 KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred hcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence 55 77777762 222345667778888899999899997775
No 318
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0015 Score=73.94 Aligned_cols=183 Identities=13% Similarity=0.060 Sum_probs=122.2
Q ss_pred cEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeC-CCeEEEEEeccCccc--c
Q 001109 552 RLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSS-SGLVWLYNLIKSSNE--E 628 (1155)
Q Consensus 552 ~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~-dG~V~lwd~~~~~~~--~ 628 (1155)
+++++++.||.+|+|--..-.-. -++.. ...|...|.+++.+-++.++++.+. |..+++||+..-... .
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGv-EfVKh-------FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminmi 92 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGV-EFVKH-------FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMI 92 (558)
T ss_pred heEEeeecchhhhhcCCCCccce-eehhh-------hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhc
Confidence 47999999999999975431100 01110 2256678999999999999999777 999999999864311 0
Q ss_pred ceee-------ec-------------cCCceEEEecCC-CCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001109 629 TLNL-------VT-------------ETGKEVHILPGG-DGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLD 687 (1155)
Q Consensus 629 ~~~~-------v~-------------~~~~~~~~~~~~-~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWD 687 (1155)
.+.+ +. ...+.+.++... ++.+....-..|..+|.++.++|-+..+.+....|.|.-|.
T Consensus 93 KL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs 172 (558)
T KOG0882|consen 93 KLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWS 172 (558)
T ss_pred ccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeec
Confidence 0100 10 112223444332 22222222345999999999999999999999999999999
Q ss_pred cCC------ccEEEE----eccC--CCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC
Q 001109 688 IST------FSVLFI----TDSL--SNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 688 i~~------~~~l~~----~~~~--~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
... ..+.+. ...+ .--.+-..++.|+ |+|..+.+-..|..|++.+.
T Consensus 173 ~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs----------------------p~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 173 AEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS----------------------PDGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred CCCcccCccccccccccccchhhcccccccCccceEEc----------------------cccCcccccCcccEEEEEEe
Confidence 874 111110 0000 0012345677777 88999999999999999999
Q ss_pred CCCceeeee
Q 001109 756 TTGHILFSR 764 (1155)
Q Consensus 756 ~tG~~l~~~ 764 (1155)
.||+++...
T Consensus 231 KtGklvqei 239 (558)
T KOG0882|consen 231 KTGKLVQEI 239 (558)
T ss_pred ccchhhhhh
Confidence 999987665
No 319
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.20 E-value=0.0011 Score=78.16 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=65.1
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCce
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRI 117 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~ 117 (1155)
--+++.|.|+|++|+.+.|+.|+.||.|.+||......... ...-....++|.|+|..++.++..|.+++||+.-...
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 46778999999999999999999999999999876543333 2344678999999999999999999999999865543
No 320
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.17 E-value=0.1 Score=57.53 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=65.4
Q ss_pred ceEEEEc-CCCCEEEEEEcCCeEEEEccCCceE--EEEcC----CCCCEEEEEEEcCCcEEEEEecC--------CeEEE
Q 001109 45 ASILAFD-HVQSLLAIGTQDGRIKVIGGDNIEG--LLVSP----KQLAFKHLEFLQNQGFLVSISSG--------NEIQL 109 (1155)
Q Consensus 45 vs~lafs-p~g~lLAsgs~DG~I~vw~~~~~~~--~~~~~----~~~~V~~l~Fs~dg~~LvS~s~D--------g~I~v 109 (1155)
...++++ ++|+++ ++..++ +.+++..+.+. +.... .......+++.++|+..++.... +.|..
T Consensus 42 ~~G~~~~~~~g~l~-v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLY-VADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEE-EEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEE-EEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6678888 665554 455544 55667665433 33321 23467899999998866665533 45777
Q ss_pred EECCCCceeeeecCCCceeEEEEecCCCEEEEEeC-CCcEEEEEecC
Q 001109 110 WDLEARRITSTLPWESNITAFSVIFGTSYMYIGDE-YGMVYVLKYDT 155 (1155)
Q Consensus 110 WDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~-dG~V~vw~~d~ 155 (1155)
++.. ++.......-...+.++|+|+++.||+... .+.|+.++++.
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~ 165 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA 165 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccc
Confidence 7776 554333333355788999999999887654 45454444443
No 321
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.15 E-value=0.00039 Score=83.74 Aligned_cols=124 Identities=17% Similarity=0.142 Sum_probs=88.8
Q ss_pred CCCCcceeeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEE-cCCCCCEEEEEEEcCCcEEEEEecC--C
Q 001109 29 KDFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLV-SPKQLAFKHLEFLQNQGFLVSISSG--N 105 (1155)
Q Consensus 29 ~~~~~~~~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~-~~~~~~V~~l~Fs~dg~~LvS~s~D--g 105 (1155)
..|.+-..|| .|...-+|+||+-+.+.|++|+-.|.|++|++.++..... .-|..+|+.|.=+.+|..+++.+.- -
T Consensus 1089 SRFr~w~~fr-d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1089 SRFRSWRSFR-DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred hhcccchhhh-ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence 3445555554 5668899999999999999999999999999877654432 2367899999999998876665432 3
Q ss_pred eEEEEECCC-CceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCc
Q 001109 106 EIQLWDLEA-RRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEG 158 (1155)
Q Consensus 106 ~I~vWDl~t-~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~ 158 (1155)
-..+|++.+ +...+++.. -.++.|+.....-++|+....+.++ |..++
T Consensus 1168 lsaLW~~~s~~~~~Hsf~e---d~~vkFsn~~q~r~~gt~~d~a~~Y--DvqT~ 1216 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDE---DKAVKFSNSLQFRALGTEADDALLY--DVQTC 1216 (1516)
T ss_pred hHHHhccccccCccccccc---cceeehhhhHHHHHhcccccceEEE--ecccC
Confidence 578999864 344444433 3567888877777788877666554 55443
No 322
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.08 E-value=0.05 Score=60.89 Aligned_cols=102 Identities=13% Similarity=0.121 Sum_probs=71.5
Q ss_pred CCCceEEEEcC-CCCEEEEEEcCCeEE-EEccCCceEEEEcC---CCCCEEEEEEEcCCcEEEEEec-----CCeEEEEE
Q 001109 42 PSTASILAFDH-VQSLLAIGTQDGRIK-VIGGDNIEGLLVSP---KQLAFKHLEFLQNQGFLVSISS-----GNEIQLWD 111 (1155)
Q Consensus 42 ~~~vs~lafsp-~g~lLAsgs~DG~I~-vw~~~~~~~~~~~~---~~~~V~~l~Fs~dg~~LvS~s~-----Dg~I~vWD 111 (1155)
|.....++.+| .+..+|.+-.-|+.- +||..+.+...... .+.-.-+-.|++||++|++.=. .|.|-|||
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 44555788888 566788887777644 48877766554332 1223346789999999998743 47899999
Q ss_pred CC-CCceeeeecCCC-ceeEEEEecCCCEEEEEe
Q 001109 112 LE-ARRITSTLPWES-NITAFSVIFGTSYMYIGD 143 (1155)
Q Consensus 112 l~-t~~~~~~l~~~~-~Vtsva~spd~~~l~~G~ 143 (1155)
.. +-+.+..+..++ .-..+.+.|||+.|+++.
T Consensus 84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence 98 556777777652 345677999999998873
No 323
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.00 E-value=0.037 Score=61.86 Aligned_cols=184 Identities=14% Similarity=0.053 Sum_probs=105.6
Q ss_pred ccCCcCcEEEEE-----ECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEE
Q 001109 546 EDYLVERLYIAG-----YRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYN 620 (1155)
Q Consensus 546 ~~s~~~~lLaTg-----s~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd 620 (1155)
.|+++|++|+|. ...|.|-+||+.. .+..+..+. .|...--.|.+.|||+.|+++.. -|.--
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~~---------s~GIGPHel~l~pDG~tLvVANG--GI~Th- 123 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIGEFP---------SHGIGPHELLLMPDGETLVVANG--GIETH- 123 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcC-CcEEEeEec---------CCCcChhhEEEcCCCCEEEEEcC--CCccC-
Confidence 799999999886 4468999999983 333333332 22223346779999999998853 22110
Q ss_pred eccCccccceeeeccCCceEEEecCCCCCc-eeEEe--ecCCCCeEEEEEcCCCCEEEEEeCCC-------cEEEEecCC
Q 001109 621 LIKSSNEETLNLVTETGKEVHILPGGDGPQ-CKALF--SVLNSPICNLKFSNFGARLAVGFECS-------QVAMLDIST 690 (1155)
Q Consensus 621 ~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~-~~~~l--~~h~~~VtslafSpdg~~LAsGs~Dg-------~V~lWDi~~ 690 (1155)
.+.+....++... .+ .+..+....|-. -...+ ..|+-.|.-|++.++|..+...=..| .|.+++...
T Consensus 124 pd~GR~kLNl~tM--~p-sL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~ 200 (305)
T PF07433_consen 124 PDSGRAKLNLDTM--QP-SLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG 200 (305)
T ss_pred cccCceecChhhc--CC-ceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC
Confidence 0000000010000 00 111121111211 11233 45778899999999997555443333 355565544
Q ss_pred ccEEEEec--cCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEE-EEEeCCceEEEEECCCCceeeeeecc
Q 001109 691 FSVLFITD--SLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETL-FFMTKDAHIVVCDSTTGHILFSRSIH 767 (1155)
Q Consensus 691 ~~~l~~~~--~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L-~s~s~Dg~I~vwd~~tG~~l~~~~~~ 767 (1155)
.-.+.... .+.....-|-|++|+ .++.++ +|+=.-+.+.+||..+|+++...++.
T Consensus 201 ~~~~~~~p~~~~~~l~~Y~gSIa~~----------------------~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~ 258 (305)
T PF07433_consen 201 ALRLLPAPEEQWRRLNGYIGSIAAD----------------------RDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP 258 (305)
T ss_pred cceeccCChHHHHhhCCceEEEEEe----------------------CCCCEEEEECCCCCEEEEEECCCCCEeeccccC
Confidence 32222110 012355678999998 666555 66677889999999999999888554
No 324
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.96 E-value=0.0047 Score=73.96 Aligned_cols=223 Identities=15% Similarity=0.133 Sum_probs=135.3
Q ss_pred CCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCC
Q 001109 592 SESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFG 671 (1155)
Q Consensus 592 ~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg 671 (1155)
...|.--+++..+++++.|+.-|.|++|.-..+.. ......+-.+.+..+..|++.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~------------------------~~~~~~~~~~~~~~~~vs~~e 88 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM------------------------RKLKNEGATGITCVRSVSSVE 88 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhh------------------------hcccccCccceEEEEEecchh
Confidence 34566667888999999999999999998665421 111223345566777889999
Q ss_pred CEEEEEeCCCcEEEEecCC---ccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCc
Q 001109 672 ARLAVGFECSQVAMLDIST---FSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDA 748 (1155)
Q Consensus 672 ~~LAsGs~Dg~V~lWDi~~---~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg 748 (1155)
.++|.|+..|.|.|+-+.. +...+..++-..|...|++|+|+ +|+..|++|..-|
T Consensus 89 ~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws----------------------~~~~k~ysGD~~G 146 (726)
T KOG3621|consen 89 YLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWS----------------------KNGMKLYSGDSQG 146 (726)
T ss_pred HhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEec----------------------ccccEEeecCCCc
Confidence 9999999999999998865 23344333334588999999999 8899999999999
Q ss_pred eEEEEECCCCceeeeeecccC---CCceEEEEEEeCCCCCCcccccccccCCCCCCCCCCCCCcCCCCCCCCCccccccc
Q 001109 749 HIVVCDSTTGHILFSRSIHHQ---ESNAIYMCIIEGGNFFSETSSEKQSLNTPQNSKATSEPDQTNANTGSDPVVAELET 825 (1155)
Q Consensus 749 ~I~vwd~~tG~~l~~~~~~~~---~~~al~~~~ld~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1155)
.|....+++- .....+.++. ++.++.+..++..--.+-.-.-.+. +.+..+- ..+..+..++..
T Consensus 147 kv~~~~L~s~-~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~Lc-----~tE~eti--~QIG~k~R~~~~----- 213 (726)
T KOG3621|consen 147 KVVLTELDSR-QAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCILC-----QTEAETI--TQIGKKPRKSLI----- 213 (726)
T ss_pred eEEEEEechh-hhhccccceeeccCcceEEeecccceehHhhhhhhhee-----ecchhHH--HHhcCCCcCCcc-----
Confidence 9999998873 3333333332 7778888777643221100000000 0011100 000000111100
Q ss_pred ccccchhhhh-ccceEEEEEeccceeeeccccccccccceeEEeeccCC
Q 001109 826 STEATYLERI-FEHLFVLLCYEDALWLYPLKSLIQGHTDSIHKVNLLKP 873 (1155)
Q Consensus 826 ~~~~~~~~~~-~~~~~~llc~e~~~~~ysl~~~~qg~~~~~~k~k~~~~ 873 (1155)
.=.+-.+... ..++..+.|+.--+|+|-...+=.-.++.+.|+-+.-|
T Consensus 214 ~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G~V~~Thqfk~ala~~ 262 (726)
T KOG3621|consen 214 DFGACFFPGQCKAQKPQIYCARPGLRLWEADFAGEVIKTHQFKDALARP 262 (726)
T ss_pred ccceEEeeccccCCCceEEEecCCCceEEeecceeEEEeeehhhhhccC
Confidence 0000111110 12566778998889999988854445777777555433
No 325
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.87 E-value=0.075 Score=57.95 Aligned_cols=96 Identities=14% Similarity=0.211 Sum_probs=64.0
Q ss_pred CCeEEEEccCCceEEEEcCCCCCEEEEE--EEcCCcEEEEEecCCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEE
Q 001109 63 DGRIKVIGGDNIEGLLVSPKQLAFKHLE--FLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMY 140 (1155)
Q Consensus 63 DG~I~vw~~~~~~~~~~~~~~~~V~~l~--Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~ 140 (1155)
+|+|..||..+++.+............. ..++++++++++.++.|..||..+|+.+.++...+.+.... ...+..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccc
Confidence 6888899987777776653311121112 44456788888999999999999999988777654333222 34556667
Q ss_pred EEeCCCcEEEEEecCCCceee
Q 001109 141 IGDEYGMVYVLKYDTEEGKLI 161 (1155)
Q Consensus 141 ~G~~dG~V~vw~~d~~~~~l~ 161 (1155)
+++.++.+ +.+|..++++.
T Consensus 81 v~~~~~~l--~~~d~~tG~~~ 99 (238)
T PF13360_consen 81 VGTSDGSL--YALDAKTGKVL 99 (238)
T ss_dssp EEETTSEE--EEEETTTSCEE
T ss_pred cccceeee--EecccCCccee
Confidence 77788854 55676666554
No 326
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.85 E-value=0.3 Score=58.03 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=62.4
Q ss_pred CCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCCCce------
Q 001109 54 QSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESNI------ 127 (1155)
Q Consensus 54 g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~V------ 127 (1155)
+..+.+++.+|.+..+|..+++.+........+..-....+ +.++.++.++.|.-.|.++|+.+..+......
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSD-GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEEC-CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 34566677888898899887776665543333322112223 56777778899999999999988776543211
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEEecCCCce
Q 001109 128 TAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGK 159 (1155)
Q Consensus 128 tsva~spd~~~l~~G~~dG~V~vw~~d~~~~~ 159 (1155)
.+-.+ .+..+++++.+|.++. +|..+++
T Consensus 199 ~sP~v--~~~~v~~~~~~g~v~a--~d~~~G~ 226 (394)
T PRK11138 199 SAPAT--AFGGAIVGGDNGRVSA--VLMEQGQ 226 (394)
T ss_pred CCCEE--ECCEEEEEcCCCEEEE--EEccCCh
Confidence 11112 2345777888887654 4554444
No 327
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0081 Score=68.26 Aligned_cols=220 Identities=12% Similarity=0.155 Sum_probs=134.9
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEE----cCCCCCEEEEEEEcCCcEEEEEec-CCeEEEEECC
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLV----SPKQLAFKHLEFLQNQGFLVSISS-GNEIQLWDLE 113 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~----~~~~~~V~~l~Fs~dg~~LvS~s~-Dg~I~vWDl~ 113 (1155)
|-|+..|+.+.... .+++.+|+.||.+|.|.....+.+-. +.|-+.|.+|+.+-+|..+.|++. |..++++|++
T Consensus 6 ymhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 6 YMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred hcccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 56888888877665 46899999999999998765333321 234567788888999877788777 9999999999
Q ss_pred CCceeeeecCC---CceeEEEEecCCC--EEEEEe-CCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccc
Q 001109 114 ARRITSTLPWE---SNITAFSVIFGTS--YMYIGD-EYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHI 187 (1155)
Q Consensus 114 t~~~~~~l~~~---~~Vtsva~spd~~--~l~~G~-~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~ 187 (1155)
.-..+..++.. +.+..+ .+++.. .++++. ++|.+.|+ |....- +|++
T Consensus 85 n~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~Vv--D~~~d~-----------------------~q~~- 137 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVV--DGFGDF-----------------------CQDG- 137 (558)
T ss_pred ccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEE--CCcCCc-----------------------Cccc-
Confidence 87766555432 332222 223322 344433 45666543 542210 0000
Q ss_pred cccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEE
Q 001109 188 QREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLV 267 (1155)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~ 267 (1155)
.. .-.+..+|.. +.+.|..+ .+++....|.|.-|.... ....-
T Consensus 138 ---------------------~f--kklH~sPV~~-----i~y~qa~D--------s~vSiD~~gmVEyWs~e~-~~qfP 180 (558)
T KOG0882|consen 138 ---------------------YF--KKLHFSPVKK-----IRYNQAGD--------SAVSIDISGMVEYWSAEG-PFQFP 180 (558)
T ss_pred ---------------------ee--cccccCceEE-----EEeecccc--------ceeeccccceeEeecCCC-cccCc
Confidence 00 0012345555 88888743 488888889999999873 11111
Q ss_pred ecccccccccccccCCCCCCCCCCccccc-ccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCcc
Q 001109 268 RGSKDLQLKTEIVDDPSKNAGHNLSETVS-DNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTK 339 (1155)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~ 339 (1155)
++.....++.+ +.+ ..-......++++|+ |+|..+++-..|..|+++++.++...+
T Consensus 181 r~~l~~~~K~e---------------TdLy~f~K~Kt~pts~Efs-p~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 181 RTNLNFELKHE---------------TDLYGFPKAKTEPTSFEFS-PDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ccccccccccc---------------chhhcccccccCccceEEc-cccCcccccCcccEEEEEEeccchhhh
Confidence 11000001100 000 000124567899999 999999999999999999999987543
No 328
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.76 E-value=0.0035 Score=45.50 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=32.7
Q ss_pred eEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001109 652 KALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLD 687 (1155)
Q Consensus 652 ~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWD 687 (1155)
...+..|...|++++|.|++.++++|+.||.|++||
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456678899999999999999999999999999996
No 329
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.72 E-value=0.064 Score=50.74 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=69.9
Q ss_pred ceEEEEc---CCC-CEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeee
Q 001109 45 ASILAFD---HVQ-SLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITST 120 (1155)
Q Consensus 45 vs~lafs---p~g-~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~ 120 (1155)
|++|++. -|| .-|.+|+.|..||||..+. .+........|..|.-... ++++.+-.+|+|-|++- ...+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeee
Confidence 5666654 444 4789999999999998764 4444455678888888877 67888889999999974 333444
Q ss_pred ecCCCceeEEEEe-cCC---CEEEEEeCCCcE
Q 001109 121 LPWESNITAFSVI-FGT---SYMYIGDEYGMV 148 (1155)
Q Consensus 121 l~~~~~Vtsva~s-pd~---~~l~~G~~dG~V 148 (1155)
.+....++++++. .++ .-|++|-.+|.|
T Consensus 77 iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 77 IKSKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred eccCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 5555667776654 222 268889888876
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.72 E-value=0.86 Score=58.51 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=59.8
Q ss_pred CCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEec
Q 001109 83 QLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYD 154 (1155)
Q Consensus 83 ~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d 154 (1155)
...|.++.|..++..++.+..+|.|.+-|.++......=.....|.+++++||.++++..+..+++.+..++
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~ 139 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD 139 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc
Confidence 458999999999999999999999999998887654333345789999999999999999999998776554
No 331
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0061 Score=72.21 Aligned_cols=92 Identities=14% Similarity=0.098 Sum_probs=73.9
Q ss_pred CeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeE-EEEEcCCCC
Q 001109 594 SVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPIC-NLKFSNFGA 672 (1155)
Q Consensus 594 ~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vt-slafSpdg~ 672 (1155)
.|.-+.|+|.-.++|.+..+|.|.++++.-.. +.++.-|.-+|+ +++|-|||+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR--------------------------lwtip~p~~~v~~sL~W~~DGk 75 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLNWQR--------------------------LWTIPIPGENVTASLCWRPDGK 75 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEeccce--------------------------eEeccCCCCccceeeeecCCCC
Confidence 57788999999999999999999999987321 233444666677 999999999
Q ss_pred EEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEe
Q 001109 673 RLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVK 713 (1155)
Q Consensus 673 ~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs 713 (1155)
.||+|..||+|++-|+.++..+..... .-..+|.+.-|+
T Consensus 76 llaVg~kdG~I~L~Dve~~~~l~~~~~--s~e~~is~~~w~ 114 (665)
T KOG4640|consen 76 LLAVGFKDGTIRLHDVEKGGRLVSFLF--SVETDISKGIWD 114 (665)
T ss_pred EEEEEecCCeEEEEEccCCCceecccc--ccccchheeecc
Confidence 999999999999999999988865321 245678888785
No 332
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.69 E-value=0.15 Score=58.75 Aligned_cols=113 Identities=23% Similarity=0.346 Sum_probs=74.0
Q ss_pred ceEEEEcCC----CCEEEEEEc---------C-CeEEEEccCCc-------eEEEEcCCCCCEEEEEEEcCCcEEEEEec
Q 001109 45 ASILAFDHV----QSLLAIGTQ---------D-GRIKVIGGDNI-------EGLLVSPKQLAFKHLEFLQNQGFLVSISS 103 (1155)
Q Consensus 45 vs~lafsp~----g~lLAsgs~---------D-G~I~vw~~~~~-------~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~ 103 (1155)
+..+.|..+ -.+||+|+. . |+|.+|+.... +.+......++|.++.-. + ++|+++ .
T Consensus 29 ~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~-~~lv~~-~ 105 (321)
T PF03178_consen 29 LCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-N-GRLVVA-V 105 (321)
T ss_dssp EEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-T-TEEEEE-E
T ss_pred EEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-C-CEEEEe-e
Confidence 334555543 479999985 2 99999987662 223333447789988777 3 344444 3
Q ss_pred CCeEEEEECCCCc-eeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCcee
Q 001109 104 GNEIQLWDLEARR-ITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKL 160 (1155)
Q Consensus 104 Dg~I~vWDl~t~~-~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l 160 (1155)
++.|.+|++...+ +...-..+..+....+...++++++|+....|.++.|+....++
T Consensus 106 g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l 163 (321)
T PF03178_consen 106 GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKL 163 (321)
T ss_dssp TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-E
T ss_pred cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEE
Confidence 6899999999887 55444444333444444457799999999999999888754333
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.65 E-value=0.032 Score=67.85 Aligned_cols=108 Identities=10% Similarity=0.082 Sum_probs=78.7
Q ss_pred EEEcCCCCEEEEEE-cCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEe------------------------
Q 001109 48 LAFDHVQSLLAIGT-QDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSIS------------------------ 102 (1155)
Q Consensus 48 lafsp~g~lLAsgs-~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s------------------------ 102 (1155)
+-++|||+.|-..+ ..+.+.++|..+.+...+..-......++|+++|+++++.+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 45778887664332 34778888888777665543233446778888888877765
Q ss_pred ----------------cCCeEEEEECCC-----CceeeeecCCCceeEEEEecCCCEEEEEeC-CCcEEEEEecC
Q 001109 103 ----------------SGNEIQLWDLEA-----RRITSTLPWESNITAFSVIFGTSYMYIGDE-YGMVYVLKYDT 155 (1155)
Q Consensus 103 ----------------~Dg~I~vWDl~t-----~~~~~~l~~~~~Vtsva~spd~~~l~~G~~-dG~V~vw~~d~ 155 (1155)
.+++|.|.|..+ ...+..++.......++++|||+++++++. +.+|.|.++..
T Consensus 278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred hHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 236799999888 467777887778889999999999988765 78898886654
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.63 E-value=0.29 Score=57.89 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=77.7
Q ss_pred CceEEEEcCCCCEEEEEEcCCeEEEEc--cC---C---------------------ce--------------EE----EE
Q 001109 44 TASILAFDHVQSLLAIGTQDGRIKVIG--GD---N---------------------IE--------------GL----LV 79 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs~DG~I~vw~--~~---~---------------------~~--------------~~----~~ 79 (1155)
.|+.+.|+++..-||+|...|.|-||. .. + .. .+ +.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 478999999999999999999999962 11 0 00 00 01
Q ss_pred cCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeec--C-------CCceeEEEEec-----CC---CEEEEE
Q 001109 80 SPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLP--W-------ESNITAFSVIF-----GT---SYMYIG 142 (1155)
Q Consensus 80 ~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~--~-------~~~Vtsva~sp-----d~---~~l~~G 142 (1155)
.-.+++|++|+.|.= ++++.|..+|.+.|-|++....++.-. . ...|+++.|.- |+ -+|++|
T Consensus 83 ~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 112679999999854 799999999999999998888877521 1 24688888862 22 478999
Q ss_pred eCCCcEEEEEecC
Q 001109 143 DEYGMVYVLKYDT 155 (1155)
Q Consensus 143 ~~dG~V~vw~~d~ 155 (1155)
+..|++.+|++..
T Consensus 162 Tn~G~v~~fkIlp 174 (395)
T PF08596_consen 162 TNSGNVLTFKILP 174 (395)
T ss_dssp ETTSEEEEEEEEE
T ss_pred eCCCCEEEEEEec
Confidence 9999999988764
No 335
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.056 Score=67.85 Aligned_cols=90 Identities=20% Similarity=0.338 Sum_probs=64.8
Q ss_pred EEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEE
Q 001109 597 ALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAV 676 (1155)
Q Consensus 597 ~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAs 676 (1155)
.++-.-.+..+|+|+..|.|..+|+.++-.. .+++ ..-+++|++++|+.||++++.
T Consensus 92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~---------------~~~n---------e~v~~~Vtsvafn~dg~~l~~ 147 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGP---------------LHQN---------ERVQGPVTSVAFNQDGSLLLA 147 (1206)
T ss_pred eeeeeeeeeeEEEEcCchhhhhhhhhcccch---------------hhcC---------CccCCcceeeEecCCCceecc
Confidence 3333345667899999999999998764210 0000 123679999999999999999
Q ss_pred EeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEe
Q 001109 677 GFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVK 713 (1155)
Q Consensus 677 Gs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs 713 (1155)
|-.+|.|.+||+..+..++.. ..|..|++++-+.
T Consensus 148 G~~~G~V~v~D~~~~k~l~~i---~e~~ap~t~vi~v 181 (1206)
T KOG2079|consen 148 GLGDGHVTVWDMHRAKILKVI---TEHGAPVTGVIFV 181 (1206)
T ss_pred ccCCCcEEEEEccCCcceeee---eecCCccceEEEE
Confidence 999999999999998776543 2355665555553
No 336
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.26 E-value=1.5 Score=49.04 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=89.7
Q ss_pred CcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcccc
Q 001109 549 LVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEE 628 (1155)
Q Consensus 549 ~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~ 628 (1155)
..++.|+-|..+| +.+++...+. ...... +..+|..+..-|+-..|++=+ ||.+++|++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~-~~~~i~-----------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS-KPTRIL-----------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVS 70 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc-cceeEe-----------ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccc
Confidence 3456788888888 8898883222 011111 122599999999877666554 4999999997643211
Q ss_pred ceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEE---EcCCCCEEEEEeCCCcEEEEecCCc-----cEEEEeccC
Q 001109 629 TLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLK---FSNFGARLAVGFECSQVAMLDISTF-----SVLFITDSL 700 (1155)
Q Consensus 629 ~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vtsla---fSpdg~~LAsGs~Dg~V~lWDi~~~-----~~l~~~~~~ 700 (1155)
....... ..+...... ......|...+ -...+.+|+++-. ..|.||..... ..+....
T Consensus 71 ~~~~~~~----------~~~~~~~~~-~~~~~~v~~f~~~~~~~~~~~L~va~k-k~i~i~~~~~~~~~f~~~~ke~~-- 136 (275)
T PF00780_consen 71 TSAPLAF----------PKSRSLPTK-LPETKGVSFFAVNGGHEGSRRLCVAVK-KKILIYEWNDPRNSFSKLLKEIS-- 136 (275)
T ss_pred ccccccc----------ccccccccc-ccccCCeeEEeeccccccceEEEEEEC-CEEEEEEEECCcccccceeEEEE--
Confidence 0000000 000000000 01122233333 1223345665554 47888888763 2333322
Q ss_pred CCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeee
Q 001109 701 SNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 701 ~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
....+.+++|. ++.|+.|+.++ ..+.|+.+|......
T Consensus 137 --lp~~~~~i~~~------------------------~~~i~v~~~~~-f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 137 --LPDPPSSIAFL------------------------GNKICVGTSKG-FYLIDLNTGSPSELL 173 (275)
T ss_pred --cCCCcEEEEEe------------------------CCEEEEEeCCc-eEEEecCCCCceEEe
Confidence 45788999997 55688888766 678899987764443
No 337
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.0047 Score=64.31 Aligned_cols=65 Identities=18% Similarity=0.323 Sum_probs=57.3
Q ss_pred CCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 001109 1084 RTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWW 1153 (1155)
Q Consensus 1084 ~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~~~~~ww 1153 (1155)
+...++.+. +.+|+.+|.+|++.++.|||.|+.|...+.+|...++-..+.|+.+.++.-..+||
T Consensus 134 ~n~~~~n~e-----l~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~a 198 (216)
T KOG0862|consen 134 RNLLKLNQE-----LQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYA 198 (216)
T ss_pred HHHHHHHHH-----HHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334444444 67999999999999999999999999999999999999999999999998777776
No 338
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.90 E-value=0.41 Score=61.29 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=53.1
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEE
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQL 109 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~v 109 (1155)
..|.++.|--++.-+.+++.+|.|.+-+......-....-...|.+.+|+||+..|+-++.++++.+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLF 135 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEE
Confidence 5788888888898899999999999987766543333233568999999999999988888777764
No 339
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.89 E-value=0.016 Score=46.10 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=32.6
Q ss_pred eeeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccC
Q 001109 35 VTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGD 72 (1155)
Q Consensus 35 ~~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~ 72 (1155)
.......+..|++++|+|...+||+|+.||.|.||...
T Consensus 4 ~~~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 4 QLGEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred eecccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34445667889999999999999999999999999773
No 340
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.89 E-value=4.4 Score=46.26 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=58.7
Q ss_pred CeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEe----------cCCeEEEEECCCCceeeeecCCC--------
Q 001109 64 GRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSIS----------SGNEIQLWDLEARRITSTLPWES-------- 125 (1155)
Q Consensus 64 G~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s----------~Dg~I~vWDl~t~~~~~~l~~~~-------- 125 (1155)
++|.|+|.+....+-..+. +-.-.+..+|+++.+++++ ....|.+||..+-.....+..+.
T Consensus 17 ~rv~viD~d~~k~lGmi~~-g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~ 95 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT-GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP 95 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE-ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred ceEEEEECCCCcEEEEeec-ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence 5899999888776654422 2344567899999888764 23459999999988777554321
Q ss_pred ceeEEEEecCCCEEEEEeCCC--cEEEEEecCCCcee
Q 001109 126 NITAFSVIFGTSYMYIGDEYG--MVYVLKYDTEEGKL 160 (1155)
Q Consensus 126 ~Vtsva~spd~~~l~~G~~dG--~V~vw~~d~~~~~l 160 (1155)
....++++.|++++++-.-.- +|.|. |...+++
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVV--Dl~~~kv 130 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVV--DLAAKKV 130 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEE--ETTTTEE
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEE--ECCCCce
Confidence 234567888999888754433 34443 4444443
No 341
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.85 E-value=1.3 Score=48.81 Aligned_cols=116 Identities=13% Similarity=0.219 Sum_probs=73.0
Q ss_pred cCCCCCceEEEEcCCC-CEEEEEEcCCeEEEEccCCceEEEE--cCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCC
Q 001109 39 YGIPSTASILAFDHVQ-SLLAIGTQDGRIKVIGGDNIEGLLV--SPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEAR 115 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g-~lLAsgs~DG~I~vw~~~~~~~~~~--~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~ 115 (1155)
.|....++.|+|+|+. .++|+....+.|.-++..+ +.+.. +..-+-...|++..++.++++--.++++.+.++...
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence 5777789999999975 5777877788887788754 44433 233456788999988766665545889999988432
Q ss_pred --ce----eeeec--CC----CceeEEEEecCCCEEEEEeCCCcEEEEEecC
Q 001109 116 --RI----TSTLP--WE----SNITAFSVIFGTSYMYIGDEYGMVYVLKYDT 155 (1155)
Q Consensus 116 --~~----~~~l~--~~----~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~ 155 (1155)
.. ...+. .. ..+-.++++|.++.|+++-+..-..++.++.
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 11 12222 22 3478999999998888887776666666554
No 342
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.83 E-value=0.42 Score=45.37 Aligned_cols=104 Identities=17% Similarity=0.120 Sum_probs=67.7
Q ss_pred eEEEEEec---CC-CeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCC
Q 001109 595 VSALEFCS---VT-LNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNF 670 (1155)
Q Consensus 595 V~~lafsp---dg-~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpd 670 (1155)
|++|+++. || ..|++|+.|..||+|+=..- +..+ .-++.|++|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~---------------------------~~Ei-~e~~~v~~L~~~~~ 53 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI---------------------------VAEI-TETDKVTSLCSLGG 53 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE---------------------------EEEE-ecccceEEEEEcCC
Confidence 56666655 32 47999999999999985431 0111 23567888887777
Q ss_pred CCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceE
Q 001109 671 GARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHI 750 (1155)
Q Consensus 671 g~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I 750 (1155)
.++|.|.++|+|-|++-.. .++... ....+.++++.--. .-.-.-|++|=.+|.|
T Consensus 54 -~~F~Y~l~NGTVGvY~~~~--RlWRiK----SK~~~~~~~~~D~~------------------gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 54 -GRFAYALANGTVGVYDRSQ--RLWRIK----SKNQVTSMAFYDIN------------------GDGVPELIVGWSNGKV 108 (111)
T ss_pred -CEEEEEecCCEEEEEeCcc--eeeeec----cCCCeEEEEEEcCC------------------CCCceEEEEEecCCeE
Confidence 5699999999999998643 333321 34447777775110 0112358888888876
Q ss_pred E
Q 001109 751 V 751 (1155)
Q Consensus 751 ~ 751 (1155)
-
T Consensus 109 e 109 (111)
T PF14783_consen 109 E 109 (111)
T ss_pred E
Confidence 4
No 343
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.048 Score=61.55 Aligned_cols=74 Identities=24% Similarity=0.269 Sum_probs=63.6
Q ss_pred CCCCEEEEEEEcCCc-EEEEEecCCeEEEEECCCCceeeeecCCCceeEEEEecC-CCEEEEEeCCCcEEEEEecC
Q 001109 82 KQLAFKHLEFLQNQG-FLVSISSGNEIQLWDLEARRITSTLPWESNITAFSVIFG-TSYMYIGDEYGMVYVLKYDT 155 (1155)
Q Consensus 82 ~~~~V~~l~Fs~dg~-~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd-~~~l~~G~~dG~V~vw~~d~ 155 (1155)
+...|+.++|+|... .|..++.+++|+|.|+++..++.++..+..+.+++|+-+ .+++|.|..+|.|.|++...
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 456899999999764 788899999999999999999988888899999999966 45899999999998775443
No 344
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=95.62 E-value=0.063 Score=58.46 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=90.3
Q ss_pred CCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEc
Q 001109 589 ATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFS 668 (1155)
Q Consensus 589 ~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafS 668 (1155)
..|..-|.++.|..|..++.++. |=.|-+|++.-.. +.+..++-.|. .+...+--|++..|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D--~sFnIVDiKP~---------------nmeeLteVItSaeFh 230 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIID--GSFNIVDIKPH---------------NMEELTEVITSAEFH 230 (460)
T ss_pred ccceeEeeeeeecCchheeeecc-ceeeeeccccccC--CceEEEeccCc---------------cHHHHHHHHhhcccC
Confidence 36888899999999999988764 6789999987532 22222211110 111223457888899
Q ss_pred CC-CCEEEEEeCCCcEEEEecCCccEE------EEe-------ccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCC
Q 001109 669 NF-GARLAVGFECSQVAMLDISTFSVL------FIT-------DSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSN 734 (1155)
Q Consensus 669 pd-g~~LAsGs~Dg~V~lWDi~~~~~l------~~~-------~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~ 734 (1155)
|. ...+.-.+..|.|++-|+++..+. +.. ..+++..+.|..+.|+
T Consensus 231 p~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs--------------------- 289 (460)
T COG5170 231 PEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFS--------------------- 289 (460)
T ss_pred HhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEc---------------------
Confidence 86 457778888999999999853321 110 0112233456777887
Q ss_pred CCCCcEEEEEeCCceEEEEECCC-Cceeeeeeccc
Q 001109 735 DTKKETLFFMTKDAHIVVCDSTT-GHILFSRSIHH 768 (1155)
Q Consensus 735 ~pd~~~L~s~s~Dg~I~vwd~~t-G~~l~~~~~~~ 768 (1155)
+.|+++++-+. -+|+|||+.- .++|.+.+||-
T Consensus 290 -~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 290 -DNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred -CCCcEEEEecc-ceEEEEecccccCCceeechHH
Confidence 66888877654 5899999864 45777777764
No 345
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=1.6 Score=51.61 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=80.3
Q ss_pred CCceEEEEcCCCC-EEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEec---CCeEEEEECCCCcee
Q 001109 43 STASILAFDHVQS-LLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISS---GNEIQLWDLEARRIT 118 (1155)
Q Consensus 43 ~~vs~lafsp~g~-lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~---Dg~I~vWDl~t~~~~ 118 (1155)
.....+++++++. ..+....+..|.++|...........-...-..++|+++++.+..+.. ++++.+-|-.+...+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 3455789999998 444554568999999666554443322225568999999988887765 688999999999888
Q ss_pred eeecCCCceeEEEEecCCCEEEEEe-CCCcEEEEE
Q 001109 119 STLPWESNITAFSVIFGTSYMYIGD-EYGMVYVLK 152 (1155)
Q Consensus 119 ~~l~~~~~Vtsva~spd~~~l~~G~-~dG~V~vw~ 152 (1155)
.+......-..++++|+|..+++.. .++.|.+.+
T Consensus 154 ~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 154 ATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVID 188 (381)
T ss_pred EEEecCCCcceEEECCCCCeEEEEecCCCeEEEEe
Confidence 8855432228899999999888877 567776664
No 346
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.047 Score=64.96 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=74.7
Q ss_pred CCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcC-CCCCEE-EEEEEcCCcEEEEEecCCeEEEEECCCCcee
Q 001109 41 IPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSP-KQLAFK-HLEFLQNQGFLVSISSGNEIQLWDLEARRIT 118 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~-~~~~V~-~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~ 118 (1155)
.+..+.-+-|+|.-.++|.++.+|.|-+.... .+.+.+.+ +...++ +++|.|||..|+.|=.||+|++-|++++..+
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34567889999999999999999999887666 66666665 444555 9999999998988889999999999999888
Q ss_pred eee--cCCCceeEEEEe
Q 001109 119 STL--PWESNITAFSVI 133 (1155)
Q Consensus 119 ~~l--~~~~~Vtsva~s 133 (1155)
... .....|+++-|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 773 344677777775
No 347
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.57 E-value=0.21 Score=61.81 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=94.1
Q ss_pred EcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcE---------EEEEecCCCceee
Q 001109 92 LQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMV---------YVLKYDTEEGKLI 161 (1155)
Q Consensus 92 s~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V---------~vw~~d~~~~~l~ 161 (1155)
-.++++|.+|+..|+|.+-|+.+-+.++++..| +.|.++.+ .|+.|++.+..+.- .|| |.+.-+.
T Consensus 184 R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVY--DLRmmra- 258 (1118)
T KOG1275|consen 184 RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVY--DLRMMRA- 258 (1118)
T ss_pred EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhh--hhhhhhc-
Confidence 345688999999999999999999999999987 56665554 78888877654432 222 2211000
Q ss_pred ccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccccccccc
Q 001109 162 HSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLG 241 (1155)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~ 241 (1155)
..|-.+ + .++- - +.|+|.-.
T Consensus 259 l~PI~~-----------------------------------------------~-~~P~-f-----lrf~Psl~------ 278 (1118)
T KOG1275|consen 259 LSPIQF-----------------------------------------------P-YGPQ-F-----LRFHPSLT------ 278 (1118)
T ss_pred cCCccc-----------------------------------------------c-cCch-h-----hhhccccc------
Confidence 000000 0 0110 1 66788643
Q ss_pred ccEEEEEEcCCeEEEEEccCC-eE-EEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEE
Q 001109 242 FSQLLLVYANGLIILWDVSED-KV-VLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLA 319 (1155)
Q Consensus 242 ~~~llsg~~dG~I~lWd~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~la 319 (1155)
.++++++..|...+-|..+- .. ... .+++ .-...+.+.+++ ++|..+|
T Consensus 279 -t~~~V~S~sGq~q~vd~~~lsNP~~~~-----~~v~-----------------------p~~s~i~~fDiS-sn~~ala 328 (1118)
T KOG1275|consen 279 -TRLAVTSQSGQFQFVDTATLSNPPAGV-----KMVN-----------------------PNGSGISAFDIS-SNGDALA 328 (1118)
T ss_pred -ceEEEEecccceeeccccccCCCccce-----eEEc-----------------------cCCCcceeEEec-CCCceEE
Confidence 68999999999999883221 11 100 0000 013458899999 9999999
Q ss_pred EEEcCCcEEEEE
Q 001109 320 VGYVDGDILLWN 331 (1155)
Q Consensus 320 sg~~DG~I~lWd 331 (1155)
.|..+|.|.+|.
T Consensus 329 fgd~~g~v~~wa 340 (1118)
T KOG1275|consen 329 FGDHEGHVNLWA 340 (1118)
T ss_pred EecccCcEeeec
Confidence 999999999997
No 348
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=0.49 Score=58.50 Aligned_cols=168 Identities=15% Similarity=0.155 Sum_probs=100.9
Q ss_pred cEEEEEECCCc-----EEEEeCCCCC-ee-eeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccC
Q 001109 552 RLYIAGYRDGS-----TRIWDATYPT-LS-LIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKS 624 (1155)
Q Consensus 552 ~lLaTgs~Dgt-----VrlWD~~~~~-l~-~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~ 624 (1155)
.+|++-+.|+. |++||+.... -. +.+.....+..+.......|+.+|+.+-+-+.+|+|-.+|.|..+.=+--
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~ 157 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL 157 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence 36677666654 9999986431 01 22221111222233334568999999999999999999999999864321
Q ss_pred ccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCC
Q 001109 625 SNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSN 704 (1155)
Q Consensus 625 ~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~ 704 (1155)
... |.+ .........+||.++|-.|++.+.-...-..|.++.+.+...... .+..|.
T Consensus 158 RDr--------------------gsr-~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~--~ld~~G 214 (933)
T KOG2114|consen 158 RDR--------------------GSR-QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLK--VLDNNG 214 (933)
T ss_pred hcc--------------------ccc-eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCccee--eeccCC
Confidence 110 000 011123456999999999998733333345699999986552222 245677
Q ss_pred CCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeee
Q 001109 705 SPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRS 765 (1155)
Q Consensus 705 ~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~ 765 (1155)
.++.+-+|+. +..+++++ .+..|.++|......-.++.
T Consensus 215 ~~lnCss~~~---------------------~t~qfIca--~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 215 ISLNCSSFSD---------------------GTYQFICA--GSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred ccceeeecCC---------------------CCccEEEe--cCceEEEEcCCCcceeeeec
Confidence 7888888872 22233433 34568899987544444444
No 349
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.51 E-value=0.53 Score=59.60 Aligned_cols=229 Identities=13% Similarity=0.118 Sum_probs=128.8
Q ss_pred EEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCC-------eEEEEeCCCeEEEEEeccCccc
Q 001109 555 IAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTL-------NLAIGSSSGLVWLYNLIKSSNE 627 (1155)
Q Consensus 555 aTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~-------~Lasgs~dG~V~lwd~~~~~~~ 627 (1155)
........|.--|+..|... ..++. ....+|. .|.|+.+ .-..|-.+..+..||.+-....
T Consensus 498 ~~~~~~~~ly~mDLe~GKVV--~eW~~--------~~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k 565 (794)
T PF08553_consen 498 LDPNNPNKLYKMDLERGKVV--EEWKV--------HDDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK 565 (794)
T ss_pred ecCCCCCceEEEecCCCcEE--EEeec--------CCCccee--EecccccccccCCCceEEEECCCceEEeccCCCCCc
Confidence 33344567777888888733 22221 1112333 4555432 3456667778888988753210
Q ss_pred cceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCe
Q 001109 628 ETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPV 707 (1155)
Q Consensus 628 ~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V 707 (1155)
. + .... ..+ ......+|+|-+.+| +||+|+.+|-|||+|-.+.+ .. -.+.+...||
T Consensus 566 ----~-------v--~~~~------k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~-AK--T~lp~lG~pI 621 (794)
T PF08553_consen 566 ----L-------V--DSQS------KQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKR-AK--TALPGLGDPI 621 (794)
T ss_pred ----e-------e--eccc------ccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchh-hh--hcCCCCCCCe
Confidence 0 0 0000 011 234568899999888 89999999999999954422 11 1345778999
Q ss_pred eEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECC--CC----ceeeeeeccc--C-CCceEEEEE
Q 001109 708 LYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDST--TG----HILFSRSIHH--Q-ESNAIYMCI 778 (1155)
Q Consensus 708 ~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~--tG----~~l~~~~~~~--~-~~~al~~~~ 778 (1155)
++|..+ .||++|+ |+-+..+.++|.. .| +.--...+.. + ..+-|.+..
T Consensus 622 ~~iDvt----------------------~DGkwil-aTc~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~p 678 (794)
T PF08553_consen 622 IGIDVT----------------------ADGKWIL-ATCKTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKP 678 (794)
T ss_pred eEEEec----------------------CCCcEEE-EeecceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCH
Confidence 999999 8999987 4667788899863 22 2211111211 1 111111110
Q ss_pred EeCCCCCCcccccccccCCCCCCCCCCCCCcCCCCCCCCCcccccccccccchhhhhccceEEEEEeccceeeecccccc
Q 001109 779 IEGGNFFSETSSEKQSLNTPQNSKATSEPDQTNANTGSDPVVAELETSTEATYLERIFEHLFVLLCYEDALWLYPLKSLI 858 (1155)
Q Consensus 779 ld~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llc~e~~~~~ysl~~~~ 858 (1155)
.+-... ......+-+.+...+ .+|.+ -.+..++.|+..-+-+|++..+.
T Consensus 679 e~~~~~--------~~~~~~~~~Ft~a~F-----nt~~~------------------~~E~~IvtstG~f~v~Wnf~kV~ 727 (794)
T PF08553_consen 679 EHVAYM--------QHETGKPISFTPAKF-----NTGIG------------------KQETSIVTSTGPFVVTWNFKKVK 727 (794)
T ss_pred HHHHHH--------HhccCCCceeeceEE-----ecCCC------------------CccceEEEeccCEEEEEEHHHHh
Confidence 000000 000000011111111 01110 12678899999999999999999
Q ss_pred ccccceeEEeeccCC
Q 001109 859 QGHTDSIHKVNLLKP 873 (1155)
Q Consensus 859 qg~~~~~~k~k~~~~ 873 (1155)
+|...+.+-+|....
T Consensus 728 ~g~~~~Y~ikry~~~ 742 (794)
T PF08553_consen 728 RGKKDPYQIKRYDEN 742 (794)
T ss_pred CCCCCceEEEEcCCc
Confidence 999999888887765
No 350
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.36 E-value=0.11 Score=64.29 Aligned_cols=142 Identities=21% Similarity=0.240 Sum_probs=96.2
Q ss_pred CcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCC---------CeEEEE
Q 001109 549 LVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSS---------GLVWLY 619 (1155)
Q Consensus 549 ~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~d---------G~V~lw 619 (1155)
.+++++.+|+..|+|-+-|..+-+ .+.++ ..|++.|.+ |+-.|.+|++++.. .-|+||
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~--~iht~---------~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVY 251 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFE--TIHTF---------DAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVY 251 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCc--eeeee---------eccccceee--eeccCCeEEEeecccccccccccchhhhh
Confidence 456799999999999999987654 23333 267777765 55678888888764 456888
Q ss_pred EeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEe---cCCccE-E
Q 001109 620 NLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFG-ARLAVGFECSQVAMLD---ISTFSV-L 694 (1155)
Q Consensus 620 d~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg-~~LAsGs~Dg~V~lWD---i~~~~~-l 694 (1155)
|++.-..... +.-|-++ .=+.|.|.- ..+|+.+..|.+.+.| +..+.. +
T Consensus 252 DLRmmral~P-------------------------I~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~ 305 (1118)
T KOG1275|consen 252 DLRMMRALSP-------------------------IQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGV 305 (1118)
T ss_pred hhhhhhccCC-------------------------cccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccce
Confidence 8876432111 1112222 235677764 4789999999999999 544422 2
Q ss_pred EEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEE
Q 001109 695 FITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCD 754 (1155)
Q Consensus 695 ~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd 754 (1155)
+..+. -++.+.++.+| +.|+.|+.|..+|+|.+|-
T Consensus 306 ~~v~p---~~s~i~~fDiS----------------------sn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 306 KMVNP---NGSGISAFDIS----------------------SNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eEEcc---CCCcceeEEec----------------------CCCceEEEecccCcEeeec
Confidence 22221 34458888888 6688899999999999997
No 351
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=95.23 E-value=0.017 Score=59.42 Aligned_cols=53 Identities=13% Similarity=0.256 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 001109 1098 VQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWWQ 1154 (1155)
Q Consensus 1098 ~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~~~~~ww~ 1154 (1155)
.+++.++|..|+++++|||++..-++|+.+++++.++.|++-+++.+.+ +|||
T Consensus 103 ~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~----~l~R 155 (190)
T COG5143 103 IDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEK----VLYR 155 (190)
T ss_pred ccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHH----HHHc
Confidence 4677889999999999999999999999999999999999999999999 9997
No 352
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.10 E-value=0.07 Score=67.00 Aligned_cols=100 Identities=19% Similarity=0.242 Sum_probs=73.4
Q ss_pred CCCEEEEEEcCCeEEEEccCCceE-EEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeE
Q 001109 53 VQSLLAIGTQDGRIKVIGGDNIEG-LLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITA 129 (1155)
Q Consensus 53 ~g~lLAsgs~DG~I~vw~~~~~~~-~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vts 129 (1155)
.+.++|+|+..|.|-.+|..+.-. +..- ..+++|++++|+.+|.+|+.|=.+|.|.+||+..+..++.+..+ .+.++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 456799999999998887765322 1111 23779999999999999999999999999999999988877544 33333
Q ss_pred E---EEecCCCEEEEEeCCCcEEEEEec
Q 001109 130 F---SVIFGTSYMYIGDEYGMVYVLKYD 154 (1155)
Q Consensus 130 v---a~spd~~~l~~G~~dG~V~vw~~d 154 (1155)
+ ....++..+++++..|.+ |...
T Consensus 178 vi~v~~t~~nS~llt~D~~Gsf--~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGSF--WKLV 203 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCce--EEEE
Confidence 3 334455578888888864 6543
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.04 E-value=3.4 Score=49.40 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=48.2
Q ss_pred EEEEcCCCCEEEEEEcC----------C-eEEEEccCCceEEE-EcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCC
Q 001109 47 ILAFDHVQSLLAIGTQD----------G-RIKVIGGDNIEGLL-VSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA 114 (1155)
Q Consensus 47 ~lafsp~g~lLAsgs~D----------G-~I~vw~~~~~~~~~-~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t 114 (1155)
.+|.+|.|..+|+...+ . .|+||+..+..... .... +.|..+.|+.+ ..|+.+..||+++++|+..
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~-~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDS-GRIVGMGWTDD-EELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECC-CCEEEEEECCC-CeEEEEEcCCEEEEEeCCC
Confidence 35667777777766444 2 59999887754322 2233 78999999987 6788899999999999863
No 354
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.01 E-value=3.9 Score=48.85 Aligned_cols=130 Identities=13% Similarity=0.081 Sum_probs=77.4
Q ss_pred cCCCCcceeeccCCCCCceEEEEcCCCCEEEEEEc-CC----eEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEe
Q 001109 28 SKDFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQ-DG----RIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSIS 102 (1155)
Q Consensus 28 ~~~~~~~~~~~~G~~~~vs~lafsp~g~lLAsgs~-DG----~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s 102 (1155)
...+|+......+....+...++||+|++||.+-. .| +|+++|..+++.+...-.......+.|.+++..|+...
T Consensus 109 evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~ 188 (414)
T PF02897_consen 109 EVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTR 188 (414)
T ss_dssp EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEE
T ss_pred EEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEE
Confidence 34566655443221233446889999999998743 33 69999998876654321111123489999987766654
Q ss_pred cC-----------CeEEEEECCCCcee--eeecC--CCc-eeEEEEecCCCEEEEEeCCCc--EEEEEecCCC
Q 001109 103 SG-----------NEIQLWDLEARRIT--STLPW--ESN-ITAFSVIFGTSYMYIGDEYGM--VYVLKYDTEE 157 (1155)
Q Consensus 103 ~D-----------g~I~vWDl~t~~~~--~~l~~--~~~-Vtsva~spd~~~l~~G~~dG~--V~vw~~d~~~ 157 (1155)
.+ ..|..|.+.+...- ..++. +.. ...+..++|+++|++....+. -.+|-++...
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 189 FDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp CSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred eCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 32 34888888776432 22332 233 567889999999887654433 3455556544
No 355
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.99 E-value=0.035 Score=39.92 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=28.3
Q ss_pred CCCCCeEEEEEecCCCeEEEEeCCCeEEEEE
Q 001109 590 TESESVSALEFCSVTLNLAIGSSSGLVWLYN 620 (1155)
Q Consensus 590 gh~~~V~~lafspdg~~Lasgs~dG~V~lwd 620 (1155)
.|...|+++.|.|++.++++++.||.|++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4667899999999999999999999999995
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.81 E-value=0.37 Score=57.49 Aligned_cols=114 Identities=18% Similarity=0.020 Sum_probs=72.2
Q ss_pred ceEEEEcCCCCEEEEEE---cC-CeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEE-ecCCe--EEEEECCCCce
Q 001109 45 ASILAFDHVQSLLAIGT---QD-GRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSI-SSGNE--IQLWDLEARRI 117 (1155)
Q Consensus 45 vs~lafsp~g~lLAsgs---~D-G~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~-s~Dg~--I~vWDl~t~~~ 117 (1155)
+..-+|+|+++.+|.-+ .. .+|.+++..+............-..-+|+|||++|+-+ ..|+. |.+.|+.++..
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~ 274 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL 274 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc
Confidence 44467888988776653 22 35777777655433322223445567899999887755 45554 66668877774
Q ss_pred eeeecCCCceeEEEEecCCCEEEEE-eCCCcEEEEEecCCCc
Q 001109 118 TSTLPWESNITAFSVIFGTSYMYIG-DEYGMVYVLKYDTEEG 158 (1155)
Q Consensus 118 ~~~l~~~~~Vtsva~spd~~~l~~G-~~dG~V~vw~~d~~~~ 158 (1155)
..-....+.-+.=.++|||++++-. +..|.-+||.++.+..
T Consensus 275 ~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 275 PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence 4322233444566799999987654 4567777787777653
No 357
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.54 E-value=5.2 Score=45.67 Aligned_cols=127 Identities=17% Similarity=0.168 Sum_probs=73.7
Q ss_pred EEcCCCC-EEEEEEcCCeEEEEccCC-ceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeee---cC
Q 001109 49 AFDHVQS-LLAIGTQDGRIKVIGGDN-IEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTL---PW 123 (1155)
Q Consensus 49 afsp~g~-lLAsgs~DG~I~vw~~~~-~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l---~~ 123 (1155)
.|+|+.. ++.+--..++|.-|+..+ ....+..+ ..+.++.-...+++|+++. ..+.+++++++..+..+ ..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p--~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSP--GGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECC--CCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 4777776 666777788999998864 34455443 3445555555557777764 44667887766553222 11
Q ss_pred ---CCceeEEEEecCCCEEEEEeC---------CCcEEEEEecCCCceee-ccc-eeccCCceeeeceeEeeEeccccc
Q 001109 124 ---ESNITAFSVIFGTSYMYIGDE---------YGMVYVLKYDTEEGKLI-HSP-YYVPKDVIEVFNHLLLEFCPNHIQ 188 (1155)
Q Consensus 124 ---~~~Vtsva~spd~~~l~~G~~---------dG~V~vw~~d~~~~~l~-~~~-~~i~~~~~~~~~~~~l~~~p~~~~ 188 (1155)
....+...+.|+|.+-+.... ...-+||.++....... ... +.++ -+|+|+||+..
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~---------NGla~SpDg~t 176 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP---------NGLAFSPDGKT 176 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec---------CceEECCCCCE
Confidence 145678899999887654322 01124566665322111 011 2222 27999999963
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.48 E-value=1.3 Score=49.66 Aligned_cols=103 Identities=18% Similarity=0.282 Sum_probs=65.1
Q ss_pred cCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceee-----------
Q 001109 51 DHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITS----------- 119 (1155)
Q Consensus 51 sp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~----------- 119 (1155)
...++.|++|+.+| |.+|+..............+|..+...++-+.|+..+ |+.+.++++..-....
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 34578999999999 8888873222222222334599999999878777776 5999999987654333
Q ss_pred ----eecCCCceeEEE---EecCCCEEEEEeCCCcEEEEEecCC
Q 001109 120 ----TLPWESNITAFS---VIFGTSYMYIGDEYGMVYVLKYDTE 156 (1155)
Q Consensus 120 ----~l~~~~~Vtsva---~spd~~~l~~G~~dG~V~vw~~d~~ 156 (1155)
.+.....+..++ -.....+|+++... .|.++.|...
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~ 124 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDP 124 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECC-EEEEEEEECC
Confidence 111223455555 12334456655554 7778777663
No 359
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.47 E-value=0.036 Score=67.58 Aligned_cols=89 Identities=18% Similarity=0.144 Sum_probs=68.8
Q ss_pred eeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCC
Q 001109 651 CKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDI 730 (1155)
Q Consensus 651 ~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~ 730 (1155)
...+|..|+..-||++||-+.++|++|+..|.|+++++.+|.-.....| |.++|+.+.=+
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc---H~SavT~vePs----------------- 1152 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC---HQSAVTLVEPS----------------- 1152 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc---ccccccccccc-----------------
Confidence 3356788999999999999999999999999999999999987765555 99999988776
Q ss_pred CCCCCCCCcEEEEEeCCc--eEEEEECC-CCceeeee
Q 001109 731 NSSNDTKKETLFFMTKDA--HIVVCDST-TGHILFSR 764 (1155)
Q Consensus 731 ~~~~~pd~~~L~s~s~Dg--~I~vwd~~-tG~~l~~~ 764 (1155)
-||.++++.+.-+ -..+|++. +|....++
T Consensus 1153 -----~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf 1184 (1516)
T KOG1832|consen 1153 -----VDGSTQLTSSSSSSPLSALWDASSTGGPRHSF 1184 (1516)
T ss_pred -----CCcceeeeeccccCchHHHhccccccCccccc
Confidence 5666666554433 35788874 34444444
No 360
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.00 E-value=0.12 Score=41.31 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=29.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 001109 658 LNSPICNLKFSNFGARLAVGFECSQVAMLDIS 689 (1155)
Q Consensus 658 h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~ 689 (1155)
....|.+++|||...+||.|+.+|.|.|+.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 35679999999999999999999999999984
No 361
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.95 E-value=1.5 Score=55.81 Aligned_cols=53 Identities=13% Similarity=0.271 Sum_probs=37.2
Q ss_pred ecCCeEEEEECCCCceeeeecCCCceeEEEEecCC-------CEEEEEeCCCcEEEEEecCC
Q 001109 102 SSGNEIQLWDLEARRITSTLPWESNITAFSVIFGT-------SYMYIGDEYGMVYVLKYDTE 156 (1155)
Q Consensus 102 s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~-------~~l~~G~~dG~V~vw~~d~~ 156 (1155)
...+.|.--||++|+.+..+..+..+.-..|.|+. .-.++|-.+..++ .+|++
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lf--riDpR 560 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLF--RIDPR 560 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceE--EeccC
Confidence 45688999999999999999887555455555542 3457787777664 44653
No 362
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.50 E-value=0.021 Score=67.71 Aligned_cols=108 Identities=12% Similarity=0.140 Sum_probs=68.0
Q ss_pred CceEEEEc--CCCCEEEEEEcCCeEEEEccCCc---eEEEEcCCCCCEEEEEEEcC-CcEEEEEe----cCCeEEEEECC
Q 001109 44 TASILAFD--HVQSLLAIGTQDGRIKVIGGDNI---EGLLVSPKQLAFKHLEFLQN-QGFLVSIS----SGNEIQLWDLE 113 (1155)
Q Consensus 44 ~vs~lafs--p~g~lLAsgs~DG~I~vw~~~~~---~~~~~~~~~~~V~~l~Fs~d-g~~LvS~s----~Dg~I~vWDl~ 113 (1155)
.+.|+|.. -+.-++|+|..+|.|-+-..... ..-++.++..++++++|++- ...|+++= .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 35666644 44568999999999988643221 12223345668999999884 34566652 35679999998
Q ss_pred CC--ceeeeec--C--CCceeEEEEecCCCEEEEEeCCCcEEEE
Q 001109 114 AR--RITSTLP--W--ESNITAFSVIFGTSYMYIGDEYGMVYVL 151 (1155)
Q Consensus 114 t~--~~~~~l~--~--~~~Vtsva~spd~~~l~~G~~dG~V~vw 151 (1155)
++ .+..+.. . .....++++..+.+++.+|.....++++
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~if 181 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIF 181 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhh
Confidence 87 2222211 1 1234566677777777778777766554
No 363
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.45 E-value=15 Score=42.03 Aligned_cols=111 Identities=8% Similarity=-0.002 Sum_probs=66.5
Q ss_pred ceEEEEcCCCCEEEEEEcC--CeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECC-CCceeeee
Q 001109 45 ASILAFDHVQSLLAIGTQD--GRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLE-ARRITSTL 121 (1155)
Q Consensus 45 vs~lafsp~g~lLAsgs~D--G~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~-t~~~~~~l 121 (1155)
...++++.||+++.+---. -.|-|.|.....++...+..+. ..+-=+++ +.+.+.|.||.+.-..++ .|+...+.
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC-~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC-WLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE-EEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE-EEEEecCC-CceEEEecCCceEEEEECCCCCEeEee
Confidence 4457999999998876543 5788899888777765543332 22222333 457788999999999988 55543221
Q ss_pred --cCC---C-ceeEEEEecCCCEEEEEeCCCcEEEEEecCCC
Q 001109 122 --PWE---S-NITAFSVIFGTSYMYIGDEYGMVYVLKYDTEE 157 (1155)
Q Consensus 122 --~~~---~-~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~ 157 (1155)
.++ . -+..-++...+..++--+-+|.|+-.++..+.
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc
Confidence 111 2 12233445555555556778887666555443
No 364
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.30 E-value=3.4 Score=49.63 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=39.8
Q ss_pred CcEEEEEecCCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCC
Q 001109 95 QGFLVSISSGNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTE 156 (1155)
Q Consensus 95 g~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~ 156 (1155)
|. |+....++.|.+||+++++.++.+.... |..+.|++++++++..+++ ++++++++.+
T Consensus 117 G~-LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 117 GN-LLGVKSSDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp SS-SEEEEETTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred Cc-EEEEECCCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 44 4444445689999999999999988664 8999999999999999876 5778887764
No 365
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.23 E-value=0.95 Score=55.48 Aligned_cols=113 Identities=4% Similarity=-0.104 Sum_probs=73.0
Q ss_pred CCceEEEEcCCCCEEEEEE----------------------------------------cCCeEEEEccCC-----ceEE
Q 001109 43 STASILAFDHVQSLLAIGT----------------------------------------QDGRIKVIGGDN-----IEGL 77 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs----------------------------------------~DG~I~vw~~~~-----~~~~ 77 (1155)
+....++++|+|+++.+.+ .+++|.|+|... ...+
T Consensus 235 gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~ 314 (635)
T PRK02888 235 GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALT 314 (635)
T ss_pred CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceE
Confidence 3455678888888887775 124566776655 3344
Q ss_pred EEcCCCCCEEEEEEEcCCcEEEEEe-cCCeEEEEECCCCce------------eeeecCCCceeEEEEecCCCEEEEEeC
Q 001109 78 LVSPKQLAFKHLEFLQNQGFLVSIS-SGNEIQLWDLEARRI------------TSTLPWESNITAFSVIFGTSYMYIGDE 144 (1155)
Q Consensus 78 ~~~~~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vWDl~t~~~------------~~~l~~~~~Vtsva~spd~~~l~~G~~ 144 (1155)
...+-......+.++|||.+++.++ .+++|.|.|+++.+. ..+.+.--.-...+|+++|....+-.-
T Consensus 315 ~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~ 394 (635)
T PRK02888 315 RYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFL 394 (635)
T ss_pred EEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEee
Confidence 4334344567899999999988776 589999999987542 333332222345678888874444455
Q ss_pred CCcEEEEEecC
Q 001109 145 YGMVYVLKYDT 155 (1155)
Q Consensus 145 dG~V~vw~~d~ 155 (1155)
|..|-.|+++.
T Consensus 395 dsqv~kwn~~~ 405 (635)
T PRK02888 395 DSQIVKWNIEA 405 (635)
T ss_pred cceeEEEehHH
Confidence 66666666554
No 366
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.99 E-value=1.4 Score=52.03 Aligned_cols=145 Identities=10% Similarity=0.121 Sum_probs=91.4
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCe-------EEEEeCCCeEEEEEeccCc
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLN-------LAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~-------Lasgs~dG~V~lwd~~~~~ 625 (1155)
+|.+|..-..++=-|+..|...--..++ ..|+-+.|.|+++. =.+|=.|..|.-||.+-..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~------------~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~ 415 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFE------------DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQG 415 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeecc------------CCcceeeccCCcchhcccccccEEeecCCceEEecccccC
Confidence 5566666666777788888733222221 13667777776542 2346667788888887432
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNS 705 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~ 705 (1155)
.. .+... ++ ..+. -...-.|.+-..+| ++|+||.+|-|+|+|-.. ....+ .+.+...
T Consensus 416 ~~-----------kl~~~-q~------kqy~-~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~-~~AKT--AlPgLG~ 472 (644)
T KOG2395|consen 416 KN-----------KLAVV-QS------KQYS-TKNNFSCFATTESG-YIVVGSLKGDIRLYDRIG-RRAKT--ALPGLGD 472 (644)
T ss_pred cc-----------eeeee-ec------cccc-cccccceeeecCCc-eEEEeecCCcEEeehhhh-hhhhh--cccccCC
Confidence 10 00000 00 0011 12245677777777 899999999999999733 22222 3567889
Q ss_pred CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC
Q 001109 706 PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 706 ~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
+|..+..+ .||++|+ |+-+.++.+.|.
T Consensus 473 ~I~hVdvt----------------------adGKwil-~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 473 AIKHVDVT----------------------ADGKWIL-ATCKTYLLLIDT 499 (644)
T ss_pred ceeeEEee----------------------ccCcEEE-EecccEEEEEEE
Confidence 99999998 7888876 577888988885
No 367
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.94 E-value=0.28 Score=52.00 Aligned_cols=106 Identities=18% Similarity=0.130 Sum_probs=63.8
Q ss_pred CCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 001109 603 VTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQ 682 (1155)
Q Consensus 603 dg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~ 682 (1155)
-+..|++|+.+|.|.+|........ +-....+-..-.+-|.-..++.+.-+|..||.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~-----------------------~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ 125 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAH-----------------------SDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR 125 (238)
T ss_pred cCceEEeecccceEEEecCCccchH-----------------------HHhhhcccccceeccccccccceeEEeccCCc
Confidence 4567999999999999988742110 00000111122223344456667889999999
Q ss_pred EEEEecCCccEEEEeccCCCCC-CCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEE--eCCceEEEEECC
Q 001109 683 VAMLDISTFSVLFITDSLSNSN-SPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFM--TKDAHIVVCDST 756 (1155)
Q Consensus 683 V~lWDi~~~~~l~~~~~~~~h~-~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~--s~Dg~I~vwd~~ 756 (1155)
|+.|++.-.+++-.. .+|. .++..+..+ ..++.|+++ |.|..++.|+++
T Consensus 126 ir~~n~~p~k~~g~~---g~h~~~~~e~~ivv----------------------~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 126 IRACNIKPNKVLGYV---GQHNFESGEELIVV----------------------GSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeeeccccCceeeee---ccccCCCcceeEEe----------------------cCCceEEeeccccchhhhhcchh
Confidence 999999877766422 2355 455554444 234556666 666666666654
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.86 E-value=1.4 Score=54.88 Aligned_cols=103 Identities=11% Similarity=0.063 Sum_probs=64.2
Q ss_pred CCceEEEEcCCCCEEEEEE------cCC--eEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecC----------
Q 001109 43 STASILAFDHVQSLLAIGT------QDG--RIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSG---------- 104 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs------~DG--~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~D---------- 104 (1155)
..++..+++|+|+.+|.-. .|+ .|.+++..+....+.. .. ....-.|+|||+.|.+++..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GH-SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CC-CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 3578899999999888766 244 4444444332222222 22 36677899998877777533
Q ss_pred --CeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEE
Q 001109 105 --NEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYV 150 (1155)
Q Consensus 105 --g~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~v 150 (1155)
+.+.+.+++.+.... ...+.|+.+.++|||..++.-. +|.|+|
T Consensus 428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 223333454443322 3346799999999999887655 466655
No 369
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=92.86 E-value=7.7 Score=45.88 Aligned_cols=115 Identities=14% Similarity=0.153 Sum_probs=79.6
Q ss_pred CceEEEEcCCCCEEEEEEc---CCeEEEEccCCceEEEEcC-CCCCEEEEEEEcCCcEEEEEe-cCCeEEEEECCCCcee
Q 001109 44 TASILAFDHVQSLLAIGTQ---DGRIKVIGGDNIEGLLVSP-KQLAFKHLEFLQNQGFLVSIS-SGNEIQLWDLEARRIT 118 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs~---DG~I~vw~~~~~~~~~~~~-~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vWDl~t~~~~ 118 (1155)
....++|+|+++.+-++.. +++|.+.|..+...+...+ ...+ ..++|.|+|.+++.+. .++.|.+.|..+....
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 5677999999976666554 6899999988766655432 2345 8899999999777665 6899999998776655
Q ss_pred e-e----ecCCCceeEEEEecCCCEEEEEeCCC-cEEEEEecCCCce
Q 001109 119 S-T----LPWESNITAFSVIFGTSYMYIGDEYG-MVYVLKYDTEEGK 159 (1155)
Q Consensus 119 ~-~----l~~~~~Vtsva~spd~~~l~~G~~dG-~V~vw~~d~~~~~ 159 (1155)
. + ......-.-++++|+|.++++..... ...+..+|...+.
T Consensus 196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce
Confidence 3 1 22224456788999999888876543 1233445655443
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.76 E-value=1.4 Score=54.89 Aligned_cols=155 Identities=14% Similarity=0.062 Sum_probs=83.4
Q ss_pred ccCCcCcEEEEEE------CCCcEEEEeCC-CCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCC-CeEE
Q 001109 546 EDYLVERLYIAGY------RDGSTRIWDAT-YPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSS-GLVW 617 (1155)
Q Consensus 546 ~~s~~~~lLaTgs------~DgtVrlWD~~-~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~d-G~V~ 617 (1155)
+++|+|+.++..- .|..-+||=.. .+...++ .. +. ..++-.|+|||+.|++.... ..++
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~---------g~--~~t~PsWspDG~~lw~v~dg~~~~~ 422 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LE---------GH--SLTRPSWSLDADAVWVVVDGNTVVR 422 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ec---------CC--CCCCceECCCCCceEEEecCcceEE
Confidence 6788888776554 24444555332 2221221 11 22 36778899999988887643 2333
Q ss_pred EEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEE---EecCCccE-
Q 001109 618 LYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAM---LDISTFSV- 693 (1155)
Q Consensus 618 lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~l---WDi~~~~~- 693 (1155)
+.+-... +.++.+... +..... ...+.|..++|||||++||.-. +|.|.| -....+..
T Consensus 423 v~~~~~~-------------gql~~~~vd-~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~ 484 (591)
T PRK13616 423 VIRDPAT-------------GQLARTPVD-ASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYA 484 (591)
T ss_pred EeccCCC-------------ceEEEEecc-Cchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCcee
Confidence 3332211 112222111 100001 3356799999999999998866 577776 44444531
Q ss_pred EEEe-ccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEE
Q 001109 694 LFIT-DSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCD 754 (1155)
Q Consensus 694 l~~~-~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd 754 (1155)
+... .+..+....+.++.|. .++. |++++.++...+|-
T Consensus 485 l~~~~~l~~~l~~~~~~l~W~----------------------~~~~-L~V~~~~~~~~v~~ 523 (591)
T PRK13616 485 LTNPREVGPGLGDTAVSLDWR----------------------TGDS-LVVGRSDPEHPVWY 523 (591)
T ss_pred ecccEEeecccCCccccceEe----------------------cCCE-EEEEecCCCCceEE
Confidence 1111 1122344557889998 5566 45666665555554
No 371
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.51 E-value=5.3 Score=48.03 Aligned_cols=101 Identities=6% Similarity=0.120 Sum_probs=55.7
Q ss_pred CceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEE-ECCCCceeeeec
Q 001109 44 TASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLW-DLEARRITSTLP 122 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vW-Dl~t~~~~~~l~ 122 (1155)
.+..|.++|+|+.+++ +.||.-.||......-... +.-....|.+. +..+.....++|+|. |++ ......++
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~-~~~~k~i~ 106 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFK-NEVVKSIK 106 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTE-E-TT----
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc----CceeEEEEecC-ccEEEEECCCeEEEEEcCc-cccceEEc
Confidence 4788999999999999 5778888887544332222 23345678885 556777778889995 443 22233344
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCcEEEEEecC
Q 001109 123 WESNITAFSVIFGTSYMYIGDEYGMVYVLKYDT 155 (1155)
Q Consensus 123 ~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~ 155 (1155)
.+..+..+-. |.+|.+.+.+ .|.+++|..
T Consensus 107 ~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~ 135 (443)
T PF04053_consen 107 LPFSVEKIFG---GNLLGVKSSD-FICFYDWET 135 (443)
T ss_dssp -SS-EEEEE----SSSEEEEETT-EEEEE-TTT
T ss_pred CCcccceEEc---CcEEEEECCC-CEEEEEhhH
Confidence 3333333322 8877777655 677776554
No 372
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.38 E-value=4.5 Score=49.62 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=27.6
Q ss_pred CCcEEEEEeCCceEEEEECCCCceeeeeecc
Q 001109 737 KKETLFFMTKDAHIVVCDSTTGHILFSRSIH 767 (1155)
Q Consensus 737 d~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~ 767 (1155)
.+..|++++.||.|..+|..||+.+.+..+.
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEEECC
Confidence 4678999999999999999999999998663
No 373
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.28 E-value=14 Score=45.89 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=60.0
Q ss_pred ceEEEEEe-c---cceeeeccccccccccceeEEee---ccCCccceeeeeeCCceeEEEEEeecCcEEEeecCCccccc
Q 001109 838 HLFVLLCY-E---DALWLYPLKSLIQGHTDSIHKVN---LLKPCCWTTSFKKNEKECGLVVLYQTGDIEIRVLPYLEVGG 910 (1155)
Q Consensus 838 ~~~~llc~-e---~~~~~ysl~~~~qg~~~~~~k~k---~~~~~~~~~~~~~~~~~~~l~~~~~~G~ieirslp~l~~~~ 910 (1155)
+.++++|. . ...++|+|. ..+..+..+. +.-.++-.+-|+- .+|-+.-+.++.|+++|||.+.+.+
T Consensus 193 ~~ll~v~~~~~~k~~ykL~~l~----~~~~~~~El~s~~~e~~~~~~s~f~Y---~~G~LY~l~~~~i~~ysip~f~~~~ 265 (670)
T PF10395_consen 193 DLLLTVSQLSNSKLSYKLISLS----NESSSIFELSSTILENFGLEDSKFCY---QFGKLYQLSKKTISSYSIPNFQIQK 265 (670)
T ss_pred ceEEEEEEcCCCcEEEEEEEec----cCCcceEEeehheeccCCcccceEEE---eCCEEEEEeCCEEEEEEcCCceEEE
Confidence 55555666 3 347888881 1223333333 3333333333433 1333344489999999999999998
Q ss_pred cccccccccc------ccccCcceeeeecCCCcEEEEcCC
Q 001109 911 QTSLMSLLRW------NYKTNMEETLCSSDSGEIVLVDFS 944 (1155)
Q Consensus 911 ~~s~~~~~~~------~~~~~~~~~~~~s~~g~~~lvng~ 944 (1155)
..+|-+++.= ++++=....+=.+.+..|+|+|=-
T Consensus 266 tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~ 305 (670)
T PF10395_consen 266 TISLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLK 305 (670)
T ss_pred EEEechhhccccccceEeecCCCCeEEEEcCCEEEEEeeh
Confidence 8888866655 333333334455667888888874
No 374
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.26 E-value=4.5 Score=44.87 Aligned_cols=177 Identities=14% Similarity=0.186 Sum_probs=114.0
Q ss_pred CCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC--CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCcee
Q 001109 83 QLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE--SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKL 160 (1155)
Q Consensus 83 ~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~--~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l 160 (1155)
...|.+|.|+|+.+.|+++.....-.||=-.+|+++.+++.. +...++++..++++.++--.++.++++.+|.+...+
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 345899999999999999998888888888899999988754 556678888899888888788999998888875443
Q ss_pred eccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccc
Q 001109 161 IHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTL 240 (1155)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~ 240 (1155)
....+.++-.. -++ .... -+-++|.|.+.
T Consensus 165 ~~~~~~i~L~~----------------------------------~~k-------~N~G-----fEGlA~d~~~~----- 193 (316)
T COG3204 165 SAKVQKIPLGT----------------------------------TNK-------KNKG-----FEGLAWDPVDH----- 193 (316)
T ss_pred eccceEEeccc----------------------------------cCC-------CCcC-----ceeeecCCCCc-----
Confidence 32111221110 000 0111 12289999753
Q ss_pred cccEEEEEEcCCeEEEEEccCCe-EEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEE
Q 001109 241 GFSQLLLVYANGLIILWDVSEDK-VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLA 319 (1155)
Q Consensus 241 ~~~~llsg~~dG~I~lWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~la 319 (1155)
+|..+-+..-+.|+.+.... .+.. +. ..++... .. ---..|+++.|..+.+..++
T Consensus 194 ---~l~~aKEr~P~~I~~~~~~~~~l~~--------~~--~~~~~~~-------~~----~f~~DvSgl~~~~~~~~LLV 249 (316)
T COG3204 194 ---RLFVAKERNPIGIFEVTQSPSSLSV--------HA--SLDPTAD-------RD----LFVLDVSGLEFNAITNSLLV 249 (316)
T ss_pred ---eEEEEEccCCcEEEEEecCCccccc--------cc--ccCcccc-------cc----eEeeccccceecCCCCcEEE
Confidence 58888887777776654222 1111 00 0000000 00 01345888999866788888
Q ss_pred EEEcCCcEEEEEcCC
Q 001109 320 VGYVDGDILLWNLRA 334 (1155)
Q Consensus 320 sg~~DG~I~lWd~~s 334 (1155)
-+..++.+.--|...
T Consensus 250 LS~ESr~l~Evd~~G 264 (316)
T COG3204 250 LSDESRRLLEVDLSG 264 (316)
T ss_pred EecCCceEEEEecCC
Confidence 888888877766654
No 375
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.99 E-value=7.4 Score=47.73 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=55.2
Q ss_pred EEEEcCCCCEEEEEeCCC------------------cEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCC
Q 001109 664 NLKFSNFGARLAVGFECS------------------QVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISP 725 (1155)
Q Consensus 664 slafSpdg~~LAsGs~Dg------------------~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~ 725 (1155)
+.++.+.+.++.+|+.|+ .|.-+|+.+++++.+.+. ..|. ++.+.... .|
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~-~~~~--~~~~~~~s---------~p 288 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQT-TPHD--LWDYDGPN---------QP 288 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeC-CCCC--CcccccCC---------CC
Confidence 356677777888888776 688899999999887653 1121 11100000 00
Q ss_pred CCCCCCCCCCCCC---cEEEEEeCCceEEEEECCCCceeeeeec
Q 001109 726 KDSDINSSNDTKK---ETLFFMTKDAHIVVCDSTTGHILFSRSI 766 (1155)
Q Consensus 726 ~~~~~~~~~~pd~---~~L~s~s~Dg~I~vwd~~tG~~l~~~~~ 766 (1155)
.-.. ..+-|+ ..+++++++|.+...|..||+.+....+
T Consensus 289 ~~~~---~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~ 329 (488)
T cd00216 289 SLAD---IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPE 329 (488)
T ss_pred eEEe---ccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEe
Confidence 0000 000123 3688999999999999999999988743
No 376
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.86 E-value=10 Score=40.67 Aligned_cols=89 Identities=20% Similarity=0.156 Sum_probs=50.3
Q ss_pred CCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCC---cEEEEEecCCeEEEEEC--CCCceeeeec------
Q 001109 54 QSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQ---GFLVSISSGNEIQLWDL--EARRITSTLP------ 122 (1155)
Q Consensus 54 g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg---~~LvS~s~Dg~I~vWDl--~t~~~~~~l~------ 122 (1155)
+.+|-+--..|.|.-||..+..+....-...++..+.|-..+ .+.+.++..-.|-=||- +...+.+++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 456666666788888887654433222111234445553333 34555555555667883 3334444432
Q ss_pred CCCceeEEEEecCCCEEEEEe
Q 001109 123 WESNITAFSVIFGTSYMYIGD 143 (1155)
Q Consensus 123 ~~~~Vtsva~spd~~~l~~G~ 143 (1155)
...+.+.-.++|+|++ +.|+
T Consensus 107 kknR~NDgkvdP~Gry-y~Gt 126 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRY-YGGT 126 (310)
T ss_pred HhcccccCccCCCCce-eeee
Confidence 1256677789999999 6665
No 377
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.57 E-value=5.6 Score=44.18 Aligned_cols=132 Identities=18% Similarity=0.024 Sum_probs=74.8
Q ss_pred ccCCcCcEEEEEE-CCC--cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEec
Q 001109 546 EDYLVERLYIAGY-RDG--STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLI 622 (1155)
Q Consensus 546 ~~s~~~~lLaTgs-~Dg--tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~ 622 (1155)
+.+++++.+|.-. .++ .++++...... ..+ +. + ..++.-.|++++...++...+..++++...
T Consensus 30 AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~-~~~--~~---------g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~ 95 (253)
T PF10647_consen 30 AVSPDGSRVAAVSEGDGGRSLYVGPAGGPV-RPV--LT---------G--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDS 95 (253)
T ss_pred EECCCCCeEEEEEEcCCCCEEEEEcCCCcc-eee--cc---------C--CccccccccCCCCEEEEEcCCCceEEEEec
Confidence 7788888776554 233 44455443322 111 11 2 267788999999888888877777777532
Q ss_pred -cCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEecC---Cc--cE
Q 001109 623 -KSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGF---ECSQVAMLDIS---TF--SV 693 (1155)
Q Consensus 623 -~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs---~Dg~V~lWDi~---~~--~~ 693 (1155)
.+... ... .....-.+.|+++++||||.++|.-. .++.|.|=-+. .+ ..
T Consensus 96 ~~g~~~------------~~~----------v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~ 153 (253)
T PF10647_consen 96 ASGTGE------------PVE----------VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRR 153 (253)
T ss_pred CCCcce------------eEE----------ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcce
Confidence 21110 000 01111122899999999999988766 34666665442 22 22
Q ss_pred EE-EeccCCCCCCCeeEEEEe
Q 001109 694 LF-ITDSLSNSNSPVLYLAVK 713 (1155)
Q Consensus 694 l~-~~~~~~~h~~~V~slafs 713 (1155)
+- ...........|.+++|.
T Consensus 154 l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 154 LTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred eccceEecccccCcceeeeec
Confidence 21 111222345689999998
No 378
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=91.38 E-value=1.8 Score=49.89 Aligned_cols=121 Identities=14% Similarity=0.239 Sum_probs=76.2
Q ss_pred CCcceeeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCce-EE--EEcCCCCCEEEEEEEcCCcEEEEEecCCeE
Q 001109 31 FDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIE-GL--LVSPKQLAFKHLEFLQNQGFLVSISSGNEI 107 (1155)
Q Consensus 31 ~~~~~~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~-~~--~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I 107 (1155)
..++.....-+++.|++|+-- +.+|++|.. +.|.+|+....+ .. ........+.++... +.+++.++....|
T Consensus 77 ~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv 151 (321)
T PF03178_consen 77 FKLKLIHSTEVKGPVTAICSF--NGRLVVAVG-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSV 151 (321)
T ss_dssp -EEEEEEEEEESS-EEEEEEE--TTEEEEEET-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSE
T ss_pred eEEEEEEEEeecCcceEhhhh--CCEEEEeec-CEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCE
Confidence 455555556778889888766 334666554 789998765544 32 222233456666555 4588888887878
Q ss_pred EEEECCC--Ccee--eeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCC
Q 001109 108 QLWDLEA--RRIT--STLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTE 156 (1155)
Q Consensus 108 ~vWDl~t--~~~~--~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~ 156 (1155)
.++.++. .++. ..=...-.++++.|.++++.+++++.+|.+.++.++..
T Consensus 152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred EEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 7775443 2222 11122356899999977789999999999999988753
No 379
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=91.36 E-value=7.4 Score=42.99 Aligned_cols=174 Identities=15% Similarity=0.242 Sum_probs=93.5
Q ss_pred CCEEEEEEEcCCcEEEEEec-CCeEEEEECCCCceeeeecCC--CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCcee
Q 001109 84 LAFKHLEFLQNQGFLVSISS-GNEIQLWDLEARRITSTLPWE--SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKL 160 (1155)
Q Consensus 84 ~~V~~l~Fs~dg~~LvS~s~-Dg~I~vWDl~t~~~~~~l~~~--~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l 160 (1155)
..+..|.|.|+.+.|+++.. .+.|.-.++ +|+.+..++.. +..-.+++..++.++++--.++.+.++.++.....+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 35999999999888888765 566766776 57888877644 678889998888777766568888887775543221
Q ss_pred eccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccc
Q 001109 161 IHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTL 240 (1155)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~ 240 (1155)
.... .. .+.+ ..+ . .... .++-++|.|..
T Consensus 101 ~~~~-------~~---~~~l-----------------------~~~--~-----~~N~-----G~EGla~D~~~------ 129 (248)
T PF06977_consen 101 DRAD-------VQ---KISL-----------------------GFP--N-----KGNK-----GFEGLAYDPKT------ 129 (248)
T ss_dssp -EEE-------EE---EEE--------------------------S----------SS-------EEEEEETTT------
T ss_pred chhh-------ce---EEec-----------------------ccc--c-----CCCc-----ceEEEEEcCCC------
Confidence 1000 00 0000 000 0 0111 13339999974
Q ss_pred cccEEEEEEcCCeEEEEEccC---CeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCe
Q 001109 241 GFSQLLLVYANGLIILWDVSE---DKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSV 317 (1155)
Q Consensus 241 ~~~~llsg~~dG~I~lWd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~ 317 (1155)
++|+++-+..-..|+.+.. ...+....... +. . .......+.++++++..|..
T Consensus 130 --~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~--~~----~----------------~~~~~~d~S~l~~~p~t~~l 185 (248)
T PF06977_consen 130 --NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQD--LD----D----------------DKLFVRDLSGLSYDPRTGHL 185 (248)
T ss_dssp --TEEEEEEESSSEEEEEEESTT-SS--EEEE-HH--HH---------------------HT--SS---EEEEETTTTEE
T ss_pred --CEEEEEeCCCChhhEEEccccCccceeeccccc--cc----c----------------ccceeccccceEEcCCCCeE
Confidence 4677888877666766653 22222110000 00 0 00124457899999556777
Q ss_pred EEEEEcCCcEEEEEcC
Q 001109 318 LAVGYVDGDILLWNLR 333 (1155)
Q Consensus 318 lasg~~DG~I~lWd~~ 333 (1155)
++....+..|..+|..
T Consensus 186 liLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 186 LILSDESRLLLELDRQ 201 (248)
T ss_dssp EEEETTTTEEEEE-TT
T ss_pred EEEECCCCeEEEECCC
Confidence 8888888888888843
No 380
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.93 E-value=3.5 Score=44.65 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=75.9
Q ss_pred EEEcCCC-CEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCCCc
Q 001109 48 LAFDHVQ-SLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESN 126 (1155)
Q Consensus 48 lafsp~g-~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~ 126 (1155)
|..-+|. .++..|+..|.++--|...+..........+|.+=+..- |.+++.++..|.+.+-+..+|.....+...+.
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vv-gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVV-GDFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEE-CCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 3333443 577888888888888888777665543334444433332 46799999999999999999988888776666
Q ss_pred eeEE-EEecCCCEEEEEeCCCcEEEEE
Q 001109 127 ITAF-SVIFGTSYMYIGDEYGMVYVLK 152 (1155)
Q Consensus 127 Vtsv-a~spd~~~l~~G~~dG~V~vw~ 152 (1155)
|.+- ...+++..++.|+.||+.+..+
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD 121 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALD 121 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEec
Confidence 6543 3578999999999999986653
No 381
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.85 E-value=14 Score=40.13 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=74.7
Q ss_pred CcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccce
Q 001109 551 ERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETL 630 (1155)
Q Consensus 551 ~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~ 630 (1155)
..+++.||..+.+.--|..++.+. ++.... ..|.+-+.- =|.+++.|...|.+++.++.+++.--.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~----We~ilg--------~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f 89 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLI----WEAILG--------VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNF 89 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEE----eehhhC--------ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeee
Confidence 457888999999999999888742 322111 122222211 2556999999999999999886431111
Q ss_pred eeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEecc
Q 001109 631 NLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDS 699 (1155)
Q Consensus 631 ~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~ 699 (1155)
+.+..- .+ .-.+.+++.++-.|+.|++....|..+..+++...+
T Consensus 90 ----------------------~~~~~v--k~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 90 ----------------------VILETV--KV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred ----------------------eehhhh--cc-ceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 001100 11 124578999999999999999999999999988655
No 382
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=90.72 E-value=5.5 Score=47.68 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=55.3
Q ss_pred CCCEEEEEEEcCCcEEEEEe---cC-CeEEEEECCCCceeeeecCCCceeEEEEecCCCEEE-EEeCCCcEEEEEecCCC
Q 001109 83 QLAFKHLEFLQNQGFLVSIS---SG-NEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMY-IGDEYGMVYVLKYDTEE 157 (1155)
Q Consensus 83 ~~~V~~l~Fs~dg~~LvS~s---~D-g~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~-~G~~dG~V~vw~~d~~~ 157 (1155)
...+..-.|+|++..++-.+ .. ..+.++|+.+++....+...+.-..-+|+|||+.|+ +...||...+|.+|...
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 34566667888887766553 22 359999999987666555555556778999999665 56678888888888765
Q ss_pred ce
Q 001109 158 GK 159 (1155)
Q Consensus 158 ~~ 159 (1155)
++
T Consensus 272 ~~ 273 (425)
T COG0823 272 KN 273 (425)
T ss_pred Cc
Confidence 44
No 383
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=90.60 E-value=0.66 Score=49.34 Aligned_cols=102 Identities=10% Similarity=0.094 Sum_probs=64.1
Q ss_pred CCEEEEEEcCCeEEEEccCCc---eEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC--Ccee
Q 001109 54 QSLLAIGTQDGRIKVIGGDNI---EGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE--SNIT 128 (1155)
Q Consensus 54 g~lLAsgs~DG~I~vw~~~~~---~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~--~~Vt 128 (1155)
+.-|++|+.+|.|++|..... .-...+....-...+.-..++.+..+++.||.|+.|++.-.+.+.....| ..+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 457899999999999876521 00111111112223333344456778889999999999887766655444 3556
Q ss_pred EEEEecCCCEEEEE--eCCCcEEEEEecC
Q 001109 129 AFSVIFGTSYMYIG--DEYGMVYVLKYDT 155 (1155)
Q Consensus 129 sva~spd~~~l~~G--~~dG~V~vw~~d~ 155 (1155)
.+.++..++++++. +.+..++.|+++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 66666677777776 6666677775543
No 384
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=90.52 E-value=2.4 Score=50.25 Aligned_cols=98 Identities=20% Similarity=0.159 Sum_probs=61.4
Q ss_pred EEEEecCCCeEEEEeCCCeEEE---EEeccCc-cccceeeeccCCceEEEecCCCCCceeEEeecCC-CCeEE---EEE-
Q 001109 597 ALEFCSVTLNLAIGSSSGLVWL---YNLIKSS-NEETLNLVTETGKEVHILPGGDGPQCKALFSVLN-SPICN---LKF- 667 (1155)
Q Consensus 597 ~lafspdg~~Lasgs~dG~V~l---wd~~~~~-~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~-~~Vts---laf- 667 (1155)
.++.+|++.+||.|..+..|.+ |+..... ...... ..+ ...+..-+ ..||+ |.+
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~---------~~~--------~g~l~~~~~e~ITsi~clpl~ 68 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYS---------ISW--------SGPLDDEPGECITSILCLPLS 68 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEE---------EEe--------eeeccCCCCCEEEEEEEEEee
Confidence 5678999999999988877766 5442221 111110 000 00111111 23444 444
Q ss_pred -------cCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeec
Q 001109 668 -------SNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSL 715 (1155)
Q Consensus 668 -------Spdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~ 715 (1155)
.||...+|+|..+|.|+++.. +|..++...+ |..||..+.+...
T Consensus 69 s~~~s~~~~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~---h~~pV~~ik~~~~ 119 (415)
T PF14655_consen 69 SQKRSTGGPDWTCIAVGTSSGYVRFYTE-NGVLLLSQLL---HEEPVLKIKCRST 119 (415)
T ss_pred cccccCCCCCcEEEEEEecccEEEEEec-cchHHHHHhc---CccceEEEEeccc
Confidence 356789999999999999997 4566665545 9999999999743
No 385
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=90.27 E-value=29 Score=41.55 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=42.2
Q ss_pred ccCCcCcEEEEEECC----------C-cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCC
Q 001109 546 EDYLVERLYIAGYRD----------G-STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSG 614 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~D----------g-tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG 614 (1155)
+.+|.|..+|....+ - .|++++..+..+.. ..++ . ..|.++.|+.+.. |++-..||
T Consensus 35 a~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~-i~w~---------~--~~iv~~~wt~~e~-LvvV~~dG 101 (410)
T PF04841_consen 35 AVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSS-IPWD---------S--GRIVGMGWTDDEE-LVVVQSDG 101 (410)
T ss_pred EEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEE-EEEC---------C--CCEEEEEECCCCe-EEEEEcCC
Confidence 445555555555433 1 58888887654321 1121 2 4899999998655 55566899
Q ss_pred eEEEEEeccC
Q 001109 615 LVWLYNLIKS 624 (1155)
Q Consensus 615 ~V~lwd~~~~ 624 (1155)
.|++|++.+.
T Consensus 102 ~v~vy~~~G~ 111 (410)
T PF04841_consen 102 TVRVYDLFGE 111 (410)
T ss_pred EEEEEeCCCc
Confidence 9999998643
No 386
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.48 E-value=14 Score=40.87 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=35.5
Q ss_pred EEcCCCCEEEEEEcC-----CeEEEEccCCc-eEEEEc-CCCCCEEEEEEEcCCcEEEEEe
Q 001109 49 AFDHVQSLLAIGTQD-----GRIKVIGGDNI-EGLLVS-PKQLAFKHLEFLQNQGFLVSIS 102 (1155)
Q Consensus 49 afsp~g~lLAsgs~D-----G~I~vw~~~~~-~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s 102 (1155)
.|||||++|-..-+| |.|=|||.... +.+-.. .+.-.-..+.+.+||+.|+.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 599999998776555 88999987632 222111 1222345678999988777664
No 387
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.95 E-value=46 Score=42.63 Aligned_cols=179 Identities=15% Similarity=0.134 Sum_probs=93.2
Q ss_pred CCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceE--EEecCCCCCceeEEeecCCCCeEEEEEcC
Q 001109 592 SESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEV--HILPGGDGPQCKALFSVLNSPICNLKFSN 669 (1155)
Q Consensus 592 ~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~--~~~~~~~g~~~~~~l~~h~~~VtslafSp 669 (1155)
...|..|.++|+|++||..|..|.+.+.=.......+.+ ..+...+ ..+..++.+ -...+...|..+.|.|
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~---~~g~~~i~Crt~~v~~~~----~~~~~~~~i~qv~WhP 156 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEF---EDGKKEINCRTVPVDERF----FTSNSSLEIKQVRWHP 156 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccc---cCCCcceeEEEEEechhh----ccCCCCceEEEEEEcC
Confidence 357899999999999999998876555432221100000 0000000 011111111 0123456899999999
Q ss_pred C---CCEEEEEeCCCcEEEEecCCccEEEEeccCC------C-CCC--------CeeEEEEeecCCCCccccCCCC-CCC
Q 001109 670 F---GARLAVGFECSQVAMLDISTFSVLFITDSLS------N-SNS--------PVLYLAVKSLSDTSNLTISPKD-SDI 730 (1155)
Q Consensus 670 d---g~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~------~-h~~--------~V~slafs~~~~~~~~~~~~~~-~~~ 730 (1155)
. +.+|++=+.|+++++||+..+....+...+. . ++. +=++++|+- +++...|+. ...
T Consensus 157 ~s~~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~slge~AV~FDf----gP~~~~~~~~~~~ 232 (717)
T PF10168_consen 157 WSESDSHLVVLTSDNTLRLYDISDPQHPWQVLSLSPGEKSSSLSSRGRSFLASLGETAVDFDF----GPLDTSPKTLTGQ 232 (717)
T ss_pred CCCCCCeEEEEecCCEEEEEecCCCCCCeEEEEcccCcccccccCCCccccccchheeeeccc----ccccccccccccc
Confidence 7 4799999999999999997654332221111 0 110 123344441 111111110 011
Q ss_pred CCCCCCCCcEEEEEeCCceEEEEEC-------CCCceeeeeecccC-----CCceEEEEEEeC
Q 001109 731 NSSNDTKKETLFFMTKDAHIVVCDS-------TTGHILFSRSIHHQ-----ESNAIYMCIIEG 781 (1155)
Q Consensus 731 ~~~~~pd~~~L~s~s~Dg~I~vwd~-------~tG~~l~~~~~~~~-----~~~al~~~~ld~ 781 (1155)
+...+.-.--|++--.+|.|++.-. ..+++.+.++|+|. ...+.++.++..
T Consensus 233 ~~~~~~~~~p~~vL~~ng~v~~~~~~l~~~~~~~~~~~gpl~~~p~~~dnyg~d~c~i~~l~~ 295 (717)
T PF10168_consen 233 KSKQEKIEWPIFVLRENGDVYLLYTSLQDENSNLPKLQGPLPMQPPADDNYGLDACSILCLPS 295 (717)
T ss_pred cCCCCceeccEEEEecCCCEEEEEEecccCccccceecCceecCCCCcccCCCceeeEEEecC
Confidence 1111111123666777777777642 23567788888886 334666666643
No 388
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=88.90 E-value=4.9 Score=45.92 Aligned_cols=110 Identities=12% Similarity=0.060 Sum_probs=71.1
Q ss_pred EEEEEecCCCeEEEEeCC-CeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEE
Q 001109 596 SALEFCSVTLNLAIGSSS-GLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARL 674 (1155)
Q Consensus 596 ~~lafspdg~~Lasgs~d-G~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~L 674 (1155)
+.|+||||++.|..+... +.|.-|++...... . .+......+..+.+.--.++...+|.+-
T Consensus 166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~--~----------------~~~~~~~~~~~~~G~PDG~~vDadG~lw 227 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGP--I----------------GGRRGFVDFDEEPGLPDGMAVDADGNLW 227 (307)
T ss_pred CceEECCCCCEEEEEeCCCCeEEEEecCcccCc--c----------------CCcceEEEccCCCCCCCceEEeCCCCEE
Confidence 689999999877766554 77888877641100 0 0000112223345556667888889887
Q ss_pred EEEeCCC-cEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCc
Q 001109 675 AVGFECS-QVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDA 748 (1155)
Q Consensus 675 AsGs~Dg-~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg 748 (1155)
+++-.+| .|.+|+.+ ++.+....+ ....+.+++|- +|+.+.|++.+...
T Consensus 228 ~~a~~~g~~v~~~~pd-G~l~~~i~l---P~~~~t~~~Fg---------------------G~~~~~L~iTs~~~ 277 (307)
T COG3386 228 VAAVWGGGRVVRFNPD-GKLLGEIKL---PVKRPTNPAFG---------------------GPDLNTLYITSARS 277 (307)
T ss_pred EecccCCceEEEECCC-CcEEEEEEC---CCCCCccceEe---------------------CCCcCEEEEEecCC
Confidence 6665554 89999998 777665544 33678889997 47777787766543
No 389
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=88.38 E-value=0.67 Score=55.62 Aligned_cols=122 Identities=14% Similarity=0.117 Sum_probs=71.3
Q ss_pred CCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCce
Q 001109 560 DGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKE 639 (1155)
Q Consensus 560 DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~ 639 (1155)
|-.++|||+.+.-..|..... ... +-.....++++-.|.++|.+|.....|.++|++..-... .
T Consensus 128 ds~~~Iwdi~s~ltvPke~~~--fs~----~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~--~-------- 191 (783)
T KOG1008|consen 128 DSSLKIWDINSLLTVPKESPL--FSS----STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV--S-------- 191 (783)
T ss_pred cCCccceecccccCCCccccc--ccc----ccccCccccccccCcchhhcccccchhhhhhhhhhhhhh--h--------
Confidence 677999998765211111110 000 112245588888899999999999999999998532100 0
Q ss_pred EEEecCCCCCceeEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEe-cCCccEEEEeccCCCCC----CCeeEEEEe
Q 001109 640 VHILPGGDGPQCKALFSVLNSPICNLKFSN-FGARLAVGFECSQVAMLD-ISTFSVLFITDSLSNSN----SPVLYLAVK 713 (1155)
Q Consensus 640 ~~~~~~~~g~~~~~~l~~h~~~VtslafSp-dg~~LAsGs~Dg~V~lWD-i~~~~~l~~~~~~~~h~----~~V~slafs 713 (1155)
.-.+..|..+.+.| .+.++++-+ ||.|.+|| ...-.-..+. +.... ..+..++|.
T Consensus 192 ----------------svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~--i~~~~N~~~~~l~~~ayc 252 (783)
T KOG1008|consen 192 ----------------SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQI--ILRNENKKPKQLFALAYC 252 (783)
T ss_pred ----------------hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHH--HhhCCCCcccceeeEEec
Confidence 00122344566788 777888766 99999999 3321111111 11122 248889998
Q ss_pred ecC
Q 001109 714 SLS 716 (1155)
Q Consensus 714 ~~~ 716 (1155)
+..
T Consensus 253 Ptr 255 (783)
T KOG1008|consen 253 PTR 255 (783)
T ss_pred cCC
Confidence 543
No 390
>PF08366 LLGL: LLGL2; InterPro: IPR013577 This domain is found in lethal giant larvae homologue 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn []. It has been identified in eukaryotes and tends to be found together with WD repeats (IPR001680 from INTERPRO).
Probab=88.29 E-value=3.9 Score=38.56 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=37.2
Q ss_pred cceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCC---CCCCceeEEEEcCCCeeEEecCC
Q 001109 393 EEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGM---NESHGTLPCVLTNPGKLQVYDRP 457 (1155)
Q Consensus 393 ~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~---~~~~~~~l~v~~~~G~l~~~d~~ 457 (1155)
.++++++. +.+ ...+....++.||..+.... ..+++.+++++.+. +|.++|+.
T Consensus 45 r~~vTV~~-g~~----------~~~ldf~s~VIDF~~i~~~~~~~e~~~P~alvVL~e~-eLVvIDL~ 100 (105)
T PF08366_consen 45 RHCVTVMQ-GKT----------HVVLDFTSRVIDFFTICESPWPNEFQDPYALVVLLEE-ELVVIDLQ 100 (105)
T ss_pred CceEEEEe-CCE----------EEEEEcCCceEEEEEEcCCCCccccCCCcEEEEEEcC-cEEEEECC
Confidence 47777764 211 34567788999999987664 45677888888875 67788865
No 391
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=87.77 E-value=5.7 Score=47.09 Aligned_cols=109 Identities=11% Similarity=0.028 Sum_probs=71.2
Q ss_pred eEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCC
Q 001109 652 KALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDIN 731 (1155)
Q Consensus 652 ~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~ 731 (1155)
...|....-.+.+|+.+|++++.|+.+.=|.|.|+|+.++.+++ .+.|..+. .++|-..........+ .....+
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvr---mWKGYRdA--qc~wi~~~~~~~~~~~-~~~~~~ 373 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVR---MWKGYRDA--QCGWIEVPEEGDRDRS-NSNSPK 373 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhh---hhccCccc--eEEEEEeecccccccc-cccccC
Confidence 34556666779999999999999999999999999999988775 34554443 3445332211111000 011111
Q ss_pred CCCCCCCcEEEEEeCCceEEEEECCCCceeeeeec
Q 001109 732 SSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSI 766 (1155)
Q Consensus 732 ~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~ 766 (1155)
......--+++-+-.=|.|.||...+|..+..+.+
T Consensus 374 ~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 374 SSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred CCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 22222233455678899999999999999988865
No 392
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.58 E-value=12 Score=47.00 Aligned_cols=181 Identities=9% Similarity=0.037 Sum_probs=101.7
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeee----eeeeC--CCcC----c-cc--cCCCCCCeEEEEEec--CCCeEEEE
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSL----IHVFG--SELP----G-IR--TATESESVSALEFCS--VTLNLAIG 610 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~----l~~l~--~~~~----~-i~--~~gh~~~V~~lafsp--dg~~Lasg 610 (1155)
+.+. +.+|+.|. .+.|.+|+.......+ ...+. .... + +. ...| .|+.+..+- +...|+.+
T Consensus 45 alsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PH--tIN~i~v~~lg~~EVLl~c 120 (717)
T PF08728_consen 45 ALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPH--TINFIKVGDLGGEEVLLLC 120 (717)
T ss_pred EEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCc--eeeEEEecccCCeeEEEEE
Confidence 4444 67788876 7899999986543211 01111 1000 0 00 0123 466665554 34578999
Q ss_pred eCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEec
Q 001109 611 SSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFS--NFGARLAVGFECSQVAMLDI 688 (1155)
Q Consensus 611 s~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafS--pdg~~LAsGs~Dg~V~lWDi 688 (1155)
.+||.|.+|..+.-...... +....... .......|...+. ....++.|++. ...++||+++....|.||-.
T Consensus 121 ~DdG~V~~Yyt~~I~~~i~~-~~~~~~~~----~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 121 TDDGDVLAYYTETIIEAIER-FSEDNDSG----FSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred ecCCeEEEEEHHHHHHHHHh-hccccccc----cccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 99999999987642100000 00000000 0000011222222 34589999999 88899999999999998865
Q ss_pred CCc--cEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCc-EEEEEeCCceEEEEEC
Q 001109 689 STF--SVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKE-TLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 689 ~~~--~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~-~L~s~s~Dg~I~vwd~ 755 (1155)
... +..+.. -..|...|-+++|-.+.. ++.|. .|++++-.|.+.+|+.
T Consensus 195 ~l~~~r~~~~~--s~~~~hNIP~VSFl~~~~-----------------d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYHVP--SHQHSHNIPNVSFLDDDL-----------------DPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecccccccccc--ccccccCCCeeEeecCCC-----------------CCccceEEEEEeccCcEEEEEE
Confidence 432 111110 012556688889974332 24454 7888999999999876
No 393
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=87.58 E-value=1.8 Score=50.64 Aligned_cols=91 Identities=14% Similarity=0.133 Sum_probs=61.8
Q ss_pred cCCCCEEEEEEc---------CCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceee-e
Q 001109 51 DHVQSLLAIGTQ---------DGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITS-T 120 (1155)
Q Consensus 51 sp~g~lLAsgs~---------DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~-~ 120 (1155)
|||+++++..+. .+.+.||+..+.+..........+....|+|+|.+++-+. ++.|.++++.++...+ +
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT 79 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT 79 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec
Confidence 688988887543 3678889988876654433356788999999998888775 7889999998874432 2
Q ss_pred ecCC-----------------CceeEEEEecCCCEEEEE
Q 001109 121 LPWE-----------------SNITAFSVIFGTSYMYIG 142 (1155)
Q Consensus 121 l~~~-----------------~~Vtsva~spd~~~l~~G 142 (1155)
..+. +.-.++-|+||+++|+..
T Consensus 80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred cccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 2121 133678899999988753
No 394
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.48 E-value=3.3 Score=44.93 Aligned_cols=70 Identities=19% Similarity=0.187 Sum_probs=52.2
Q ss_pred EEcCCcEEEEEecCCeEEEEECCCCceeeee---------------cCCCceeEEEEecCCCEEEEEeCCCcEEEEEecC
Q 001109 91 FLQNQGFLVSISSGNEIQLWDLEARRITSTL---------------PWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDT 155 (1155)
Q Consensus 91 Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l---------------~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~ 155 (1155)
+..++.+|++.+.+|.+.+||+.+++++..- .....|+.+.++.+|.-+++ ..+|..+.|+.+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEEecccc
Confidence 4556789999999999999999998765322 12367899999988876654 5678888887777
Q ss_pred CCceee
Q 001109 156 EEGKLI 161 (1155)
Q Consensus 156 ~~~~l~ 161 (1155)
.....+
T Consensus 97 ~~W~~v 102 (219)
T PF07569_consen 97 GCWIRV 102 (219)
T ss_pred ceeEEe
Confidence 654433
No 395
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.15 E-value=6.9 Score=43.10 Aligned_cols=66 Identities=17% Similarity=0.106 Sum_probs=43.8
Q ss_pred ccCCcCcEEEEEECC-----CcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEE-
Q 001109 546 EDYLVERLYIAGYRD-----GSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLY- 619 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~D-----gtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lw- 619 (1155)
.|+|+|++|...-.| |.|-+||+..+- ..+-.+ .+|...--.+.+.+||++||+++ |-|+.-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~f-qrvgE~---------~t~GiGpHev~lm~DGrtlvvan--GGIethp 187 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGF-QRVGEF---------STHGIGPHEVTLMADGRTLVVAN--GGIETHP 187 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEeccccc-ceeccc---------ccCCcCcceeEEecCCcEEEEeC--Cceeccc
Confidence 689999988766433 778899987442 222222 24555566788999999999874 556655
Q ss_pred Eecc
Q 001109 620 NLIK 623 (1155)
Q Consensus 620 d~~~ 623 (1155)
++..
T Consensus 188 dfgR 191 (366)
T COG3490 188 DFGR 191 (366)
T ss_pred ccCc
Confidence 4433
No 396
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=86.62 E-value=1.1e+02 Score=39.54 Aligned_cols=117 Identities=10% Similarity=0.089 Sum_probs=64.9
Q ss_pred CCCCceEEE-EcCCC---CEEEEEEcCCeEEE--EccCCceEEE-EcCC--------CCCEEEEEEEcCCcEEEEEecCC
Q 001109 41 IPSTASILA-FDHVQ---SLLAIGTQDGRIKV--IGGDNIEGLL-VSPK--------QLAFKHLEFLQNQGFLVSISSGN 105 (1155)
Q Consensus 41 ~~~~vs~la-fsp~g---~lLAsgs~DG~I~v--w~~~~~~~~~-~~~~--------~~~V~~l~Fs~dg~~LvS~s~Dg 105 (1155)
.-+.|..++ |=|.| .+|.+++.++++.+ |+....+... .++. ..+=..+...|.++.+...-.+|
T Consensus 56 ifg~I~~i~~fRp~g~~kD~LfV~t~~~~~~iL~~d~~~~~vv~~a~~~v~dr~gr~s~~g~~~~VDp~~R~Igl~~yqg 135 (1096)
T KOG1897|consen 56 IFGTIATIALFRPPGSDKDYLFVATDSYRYFILEWDEESIQVVTRAHGDVSDRSGRPSDNGQILLVDPKGRVIGLHLYQG 135 (1096)
T ss_pred cceeEEEEEeecCCCCCcceEEEEECcceEEEEEEccccceEEEEecccccccccccCCCceEEEECCCCcEEEEEeecC
Confidence 334555544 66654 69999999998877 8774433332 2211 12234567788876555555678
Q ss_pred eEEEEECCCC------ceeeeec--CC-CceeEEEEecC--CCEEEEEeCC---CcEEEEEecCCC
Q 001109 106 EIQLWDLEAR------RITSTLP--WE-SNITAFSVIFG--TSYMYIGDEY---GMVYVLKYDTEE 157 (1155)
Q Consensus 106 ~I~vWDl~t~------~~~~~l~--~~-~~Vtsva~spd--~~~l~~G~~d---G~V~vw~~d~~~ 157 (1155)
-+++-.+++. .....+. .+ -.|.++.|.-+ ...+++.-.| ..++.+.++..+
T Consensus 136 l~~vIp~d~~~sht~~s~l~~fn~rfdel~v~Di~fly~~s~pt~~vly~Ds~~~Hv~~yelnl~~ 201 (1096)
T KOG1897|consen 136 LFKVIPIDSDESHTGGSLLKAFNVRFDELNVYDIKFLYGCSDPTLAVLYKDSDGRHVKTYELNLRD 201 (1096)
T ss_pred eEEEEEecccccccCcccccccccccCcceEEEEEEEcCCCCCceEEEEEcCCCcEEEEEEeccch
Confidence 8888777663 3333222 22 45777777533 2234443333 345555555544
No 397
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=86.29 E-value=2.2 Score=33.25 Aligned_cols=31 Identities=23% Similarity=0.157 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCcEEEEecCC
Q 001109 660 SPICNLKFSNFG---ARLAVGFECSQVAMLDIST 690 (1155)
Q Consensus 660 ~~VtslafSpdg---~~LAsGs~Dg~V~lWDi~~ 690 (1155)
|+|.+++|||.. .+||..-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 578999999854 4999999999999999995
No 398
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.09 E-value=17 Score=44.88 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=27.7
Q ss_pred CCcEEEEEeCCceEEEEECCCCceeeeeecccC
Q 001109 737 KKETLFFMTKDAHIVVCDSTTGHILFSRSIHHQ 769 (1155)
Q Consensus 737 d~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~~~ 769 (1155)
.+.+++.++.||.++.+|..||+.|....+...
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~ 503 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSG 503 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCC
Confidence 456788899999999999999999998855433
No 399
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=85.70 E-value=11 Score=41.94 Aligned_cols=98 Identities=9% Similarity=-0.015 Sum_probs=61.2
Q ss_pred CceEEEEcCCCCEEEEEE--cC-CeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEE-CCCCcee-
Q 001109 44 TASILAFDHVQSLLAIGT--QD-GRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWD-LEARRIT- 118 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs--~D-G~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWD-l~t~~~~- 118 (1155)
.+...|++++|+.+|.-. .+ ..+.++...+...... ....+..-.|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688899999999877665 22 3555554443222221 223677789999965555545566667763 3344322
Q ss_pred eeecCC---CceeEEEEecCCCEEEEEe
Q 001109 119 STLPWE---SNITAFSVIFGTSYMYIGD 143 (1155)
Q Consensus 119 ~~l~~~---~~Vtsva~spd~~~l~~G~ 143 (1155)
..+... +.|+++.++|||..++.-.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEE
Confidence 122222 3899999999999887654
No 400
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.50 E-value=1 Score=56.03 Aligned_cols=129 Identities=14% Similarity=0.111 Sum_probs=70.7
Q ss_pred CeEEEEEec---CCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEE-----
Q 001109 594 SVSALEFCS---VTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNL----- 665 (1155)
Q Consensus 594 ~V~~lafsp---dg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vtsl----- 665 (1155)
.+.-|.||| +.-++..+-.+|+|++..+.+.... . |.+|...++.+
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~----l----------------------~rsHs~~~~d~a~~~~ 235 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS----L----------------------FRSHSQRVTDMAFFAE 235 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHHH----H----------------------HHhcCCCcccHHHHhh
Confidence 445555555 6677888888999999887764321 0 11122221111
Q ss_pred ------EEcCCCCEEEEEeCCCcEEEEecC-Cc-cEEEEeccCCCCC-CCeeEEEEeecCCCCccccCCCCCCCCCCCCC
Q 001109 666 ------KFSNFGARLAVGFECSQVAMLDIS-TF-SVLFITDSLSNSN-SPVLYLAVKSLSDTSNLTISPKDSDINSSNDT 736 (1155)
Q Consensus 666 ------afSpdg~~LAsGs~Dg~V~lWDi~-~~-~~l~~~~~~~~h~-~~V~slafs~~~~~~~~~~~~~~~~~~~~~~p 736 (1155)
..||||+.+|.+..||.|++|.+. ++ ...+..+.+..|. .|-.+.-|..... .-..-+
T Consensus 236 g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~-------------~~v~i~ 302 (1283)
T KOG1916|consen 236 GVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEI-------------LVVSIG 302 (1283)
T ss_pred chhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccc-------------cCCccc
Confidence 179999999999999999999763 12 2222223345566 3332222431100 000011
Q ss_pred CCcEEEEEeC-CceEEEEECCCCcee
Q 001109 737 KKETLFFMTK-DAHIVVCDSTTGHIL 761 (1155)
Q Consensus 737 d~~~L~s~s~-Dg~I~vwd~~tG~~l 761 (1155)
--++++++++ ...+++|....-+|+
T Consensus 303 ~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 303 KWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeEEEEecccCCcceeEeeccchhhh
Confidence 1233444443 346889987776665
No 401
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.17 E-value=40 Score=40.08 Aligned_cols=103 Identities=9% Similarity=0.014 Sum_probs=62.8
Q ss_pred CceEEEEcCCCCEEEEEEcCCeEEE-EccCCce-EEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCc-----
Q 001109 44 TASILAFDHVQSLLAIGTQDGRIKV-IGGDNIE-GLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARR----- 116 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs~DG~I~v-w~~~~~~-~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~----- 116 (1155)
....+..+++|.++|+|.. |.+.+ |+..... .....+....+..+.|.++++.++++ .+|.+ +|.-+.++
T Consensus 240 sf~~v~~~~dG~~~~vg~~-G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSR-GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred ceeeEEEcCCCCEEEEECC-ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence 3455678899999888865 55444 4443321 22334445678999999997766544 56654 55555554
Q ss_pred eeeeecCC---CceeEEEEecCCCEEEEEeCCCcEEE
Q 001109 117 ITSTLPWE---SNITAFSVIFGTSYMYIGDEYGMVYV 150 (1155)
Q Consensus 117 ~~~~l~~~---~~Vtsva~spd~~~l~~G~~dG~V~v 150 (1155)
....+... ..++++.|.+++..+++| ..|.+..
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~ 352 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLR 352 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEE
Confidence 22333222 358889999887766655 5676543
No 402
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.70 E-value=14 Score=39.41 Aligned_cols=123 Identities=14% Similarity=0.146 Sum_probs=68.2
Q ss_pred ECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCC---C---eEEEEEe-ccCccc-cc
Q 001109 558 YRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSS---G---LVWLYNL-IKSSNE-ET 629 (1155)
Q Consensus 558 s~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~d---G---~V~lwd~-~~~~~~-~~ 629 (1155)
.....|.+|++......+++.+.+- +.|..++++..|.+|++=-.+ . .+|+|-= +..... ..
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~Tv----------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFSTV----------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcch----------hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 4457799999986666667776532 389999999999999974332 2 6777632 211100 00
Q ss_pred eeeeccCCceEEEecCCCCCceeEEee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCcc
Q 001109 630 LNLVTETGKEVHILPGGDGPQCKALFS-VLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFS 692 (1155)
Q Consensus 630 ~~~v~~~~~~~~~~~~~~g~~~~~~l~-~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~ 692 (1155)
.. ++--+..+.....+......-.++ ..+.+++|+|+.|-..-|++|+.+ .+.||-+....
T Consensus 105 v~-vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~-~l~lf~l~~~~ 166 (215)
T PF14761_consen 105 VR-VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN-KLVLFTLKYQT 166 (215)
T ss_pred EE-EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC-EEEEEEEEEEE
Confidence 00 000000000000000000011111 235688999999987778888854 58899876543
No 403
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=84.55 E-value=48 Score=37.77 Aligned_cols=151 Identities=11% Similarity=0.054 Sum_probs=75.4
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
..++++++++.++.-....-||-....-.+... .....|.++.|+|++.+..++ ..|.|++=+.....
T Consensus 151 ~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r-----------~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 151 TRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR-----------NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp EE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-------------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred EECCCCcEEEEECcccEEEEecCCCccceEEcc-----------CccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 456888877777655555678865443222111 123489999999998765544 88888877622211
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNS 705 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~ 705 (1155)
..++.. ...+..-.-.+..|+|.+++...|+|+.. ++ +...+.++-=...+......+
T Consensus 219 ---------------~~w~~~-----~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~~~~~~ 276 (302)
T PF14870_consen 219 ---------------ETWSEP-----IIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVGENVPS 276 (302)
T ss_dssp ---------------EEE--------B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS
T ss_pred ---------------cccccc-----cCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCCccceECccccCCCC
Confidence 001000 00001112247899999999988877754 33 344455543333333334556
Q ss_pred CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEE
Q 001109 706 PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVC 753 (1155)
Q Consensus 706 ~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vw 753 (1155)
-++.+.|.. ....++.+.||.|.-|
T Consensus 277 n~~~i~f~~-----------------------~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 277 NLYRIVFVN-----------------------PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp ---EEEEEE-----------------------TTEEEEE-STTEEEEE
T ss_pred ceEEEEEcC-----------------------CCceEEECCCcEEEEe
Confidence 788999972 2446667888887654
No 404
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=84.43 E-value=61 Score=36.00 Aligned_cols=158 Identities=17% Similarity=0.092 Sum_probs=91.5
Q ss_pred ccCCcCcEEEEEECCC--cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEecc
Q 001109 546 EDYLVERLYIAGYRDG--STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIK 623 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~Dg--tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~ 623 (1155)
.|..++.++-+.+.-| .||.+|..+++......+.....+ ..+++- +++...-.=.+|...+||..+
T Consensus 51 ~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~Fg----------EGit~~-~d~l~qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 51 EFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFG----------EGITIL-GDKLYQLTWKEGTGFVYDPNT 119 (264)
T ss_dssp EEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--E----------EEEEEE-TTEEEEEESSSSEEEEEETTT
T ss_pred EecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccc----------eeEEEE-CCEEEEEEecCCeEEEEcccc
Confidence 4446677888887766 799999999874433334322211 122222 223333344567777888765
Q ss_pred CccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCC
Q 001109 624 SSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNS 703 (1155)
Q Consensus 624 ~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h 703 (1155)
-+.. ..|. ..+.=+.|+ .||+.|...+-...+.++|..+.+...+..+. ..
T Consensus 120 l~~~-------------------------~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~ 170 (264)
T PF05096_consen 120 LKKI-------------------------GTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-DN 170 (264)
T ss_dssp TEEE-------------------------EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ET
T ss_pred ceEE-------------------------EEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE-EC
Confidence 3221 1121 112224444 67888888777888999999887777665542 22
Q ss_pred CCC---eeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeec
Q 001109 704 NSP---VLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSI 766 (1155)
Q Consensus 704 ~~~---V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~ 766 (1155)
..| +.-|-|- +|.+.+=.=....|..+|++||++++...+
T Consensus 171 g~pv~~LNELE~i-----------------------~G~IyANVW~td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 171 GRPVSNLNELEYI-----------------------NGKIYANVWQTDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp TEE---EEEEEEE-----------------------TTEEEEEETTSSEEEEEETTT-BEEEEEE-
T ss_pred CEECCCcEeEEEE-----------------------cCEEEEEeCCCCeEEEEeCCCCeEEEEEEh
Confidence 333 4445663 577777666677899999999999988743
No 405
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.45 E-value=4 Score=50.86 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=28.0
Q ss_pred CCcEEEEEeCCceEEEEECCCCceeeeeecc
Q 001109 737 KKETLFFMTKDAHIVVCDSTTGHILFSRSIH 767 (1155)
Q Consensus 737 d~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~ 767 (1155)
+..+|++.+.|+++||||+.|++++.+..+.
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 6789999999999999999999999888655
No 406
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.26 E-value=67 Score=36.03 Aligned_cols=117 Identities=11% Similarity=0.139 Sum_probs=78.8
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCC--CCEEEEEEEcCCcEEEEEecCCeEEEEECCCCc
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQ--LAFKHLEFLQNQGFLVSISSGNEIQLWDLEARR 116 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~--~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~ 116 (1155)
.|....+++|+|+|+.+.|.+-++.+.-.|+=...++.+.+.+.. .--..+++..++.+.++-=.++++.+.-++...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 577888999999999998877777777777765556665544321 123456777776666655567888888776553
Q ss_pred eee-----eecC------CCceeEEEEecCCCEEEEEeCCCcEEEEEecC
Q 001109 117 ITS-----TLPW------ESNITAFSVIFGTSYMYIGDEYGMVYVLKYDT 155 (1155)
Q Consensus 117 ~~~-----~l~~------~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~ 155 (1155)
... .++. ......++++|.+..|+++=+..=+.|+.++.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 221 1211 12355789999998888887776666766653
No 407
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.98 E-value=5.9 Score=49.32 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=45.1
Q ss_pred CCCCEEEEEEcCCeEEEEccCC-----ceEE--EEcC--------------------CCCCEEEEEEEc----CCcEEEE
Q 001109 52 HVQSLLAIGTQDGRIKVIGGDN-----IEGL--LVSP--------------------KQLAFKHLEFLQ----NQGFLVS 100 (1155)
Q Consensus 52 p~g~lLAsgs~DG~I~vw~~~~-----~~~~--~~~~--------------------~~~~V~~l~Fs~----dg~~LvS 100 (1155)
++...|+++..||.+....... .... .... ....+..+.+.. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667899999999888765432 1111 0000 013455566655 6689999
Q ss_pred EecCCeEEEEECCCCceeeeec
Q 001109 101 ISSGNEIQLWDLEARRITSTLP 122 (1155)
Q Consensus 101 ~s~Dg~I~vWDl~t~~~~~~l~ 122 (1155)
.+.|+++|+||+.+++++.+..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999987654
No 408
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.80 E-value=3 Score=49.29 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=48.4
Q ss_pred ceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcC-CCCCEEEEEEEcCCcEEEEEecCCeEEEEEC
Q 001109 45 ASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSP-KQLAFKHLEFLQNQGFLVSISSGNEIQLWDL 112 (1155)
Q Consensus 45 vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~-~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl 112 (1155)
-+|.|-.-+| ++|+|+.+|.||||+.-+...-..+| ...+|+++..+.||.++++.| +..+.+-++
T Consensus 433 Fsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 433 FSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred cceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 4555555555 88999999999999985443332333 367999999999999888766 666666654
No 409
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=82.40 E-value=42 Score=33.23 Aligned_cols=107 Identities=16% Similarity=0.167 Sum_probs=67.3
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEccCCce----------EEEEcCCCCCEEEEE---EEcC-CcEEEEEecCCeEEEEE
Q 001109 46 SILAFDHVQSLLAIGTQDGRIKVIGGDNIE----------GLLVSPKQLAFKHLE---FLQN-QGFLVSISSGNEIQLWD 111 (1155)
Q Consensus 46 s~lafsp~g~lLAsgs~DG~I~vw~~~~~~----------~~~~~~~~~~V~~l~---Fs~d-g~~LvS~s~Dg~I~vWD 111 (1155)
..-.|+...--||.++.-|.|.|++..... .++.. ...|++|+ |.|+ ++-++-.+...++..+|
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--n~~italaaG~l~~~~~~D~LliGt~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--NQEITALAAGRLKPDDGRDCLLIGTQTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC--CCceEEEEEEecCCCCCcCEEEEeccceEEEEE
Confidence 445688877889999999999999754221 22222 33566664 4322 23344445577899999
Q ss_pred CCCCceeeeecCCCceeEEEEec----CCCEEEEEeCCCcEEEEEecCCC
Q 001109 112 LEARRITSTLPWESNITAFSVIF----GTSYMYIGDEYGMVYVLKYDTEE 157 (1155)
Q Consensus 112 l~t~~~~~~l~~~~~Vtsva~sp----d~~~l~~G~~dG~V~vw~~d~~~ 157 (1155)
++...-+..-..+..|+++.+-. +..++++|+ .-.|+-||.+.
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG---ncsi~Gfd~~G 126 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG---NCSIQGFDYEG 126 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEECc---eEEEEEeCCCC
Confidence 99877666556677788887742 344666653 33445555543
No 410
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=81.88 E-value=63 Score=36.88 Aligned_cols=139 Identities=12% Similarity=0.102 Sum_probs=69.5
Q ss_pred CCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCC
Q 001109 593 ESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGA 672 (1155)
Q Consensus 593 ~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~ 672 (1155)
..+..+..++||+++|++..-....-|+-.... |...-..-+..|.+|.|+|++.
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-------------------------w~~~~r~~~~riq~~gf~~~~~ 199 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-------------------------WQPHNRNSSRRIQSMGFSPDGN 199 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--------------------------EEEE--SSS-EEEEEE-TTS-
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCcc-------------------------ceEEccCccceehhceecCCCC
Confidence 478899999999999888655444556543311 1111122356899999999998
Q ss_pred EEEEEeCCCcEEEEecCCccEEEEeccC--CCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceE
Q 001109 673 RLAVGFECSQVAMLDISTFSVLFITDSL--SNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHI 750 (1155)
Q Consensus 673 ~LAsGs~Dg~V~lWDi~~~~~l~~~~~~--~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I 750 (1155)
+..++ ..|.|++=+......-...... ..-...+..++|. +++.+.++ +..|++
T Consensus 200 lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~----------------------~~~~~wa~-gg~G~l 255 (302)
T PF14870_consen 200 LWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYR----------------------PPNEIWAV-GGSGTL 255 (302)
T ss_dssp EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEES----------------------SSS-EEEE-ESTT-E
T ss_pred EEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEec----------------------CCCCEEEE-eCCccE
Confidence 76655 7888888872222122222111 1133458999997 55555554 445544
Q ss_pred EEEECCCCceeeeeecccC-CCceEEEEEEeC
Q 001109 751 VVCDSTTGHILFSRSIHHQ-ESNAIYMCIIEG 781 (1155)
Q Consensus 751 ~vwd~~tG~~l~~~~~~~~-~~~al~~~~ld~ 781 (1155)
+...+.|+--..-+.-.. |+....+.+.++
T Consensus 256 -~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 256 -LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp -EEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred -EEeCCCCccceECccccCCCCceEEEEEcCC
Confidence 445566776655544334 666666666543
No 411
>PHA02713 hypothetical protein; Provisional
Probab=81.67 E-value=12 Score=46.76 Aligned_cols=24 Identities=4% Similarity=-0.035 Sum_probs=17.4
Q ss_pred CCCcEEEEEeCCc--eEEEEECCCCc
Q 001109 736 TKKETLFFMTKDA--HIVVCDSTTGH 759 (1155)
Q Consensus 736 pd~~~L~s~s~Dg--~I~vwd~~tG~ 759 (1155)
.++++.++|+.|+ ++..+|..|.+
T Consensus 511 ~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 511 HDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ECCEEEEEeeecceeehhhcCccccc
Confidence 3588888999888 66667766544
No 412
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=80.90 E-value=1.3e+02 Score=35.83 Aligned_cols=93 Identities=15% Similarity=0.241 Sum_probs=48.6
Q ss_pred CCCCEEEEEEcC------CeEEEEccCCceEEEEcCC----CCCEEEEEEEcCCcEEEEEe-------------------
Q 001109 52 HVQSLLAIGTQD------GRIKVIGGDNIEGLLVSPK----QLAFKHLEFLQNQGFLVSIS------------------- 102 (1155)
Q Consensus 52 p~g~lLAsgs~D------G~I~vw~~~~~~~~~~~~~----~~~V~~l~Fs~dg~~LvS~s------------------- 102 (1155)
|+|+++.++-.| |-+.++|.++.++...-.. ..--..+.+.|....++|..
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence 578887775433 5677788776665544322 11223455566656666643
Q ss_pred -cCCeEEEEECCCCceeeeecCC---CceeEEEEe--cCCCEEEEEeC
Q 001109 103 -SGNEIQLWDLEARRITSTLPWE---SNITAFSVI--FGTSYMYIGDE 144 (1155)
Q Consensus 103 -~Dg~I~vWDl~t~~~~~~l~~~---~~Vtsva~s--pd~~~l~~G~~ 144 (1155)
..+++.+||+.+++.++++... .-+-.+.|. |+..+-++|..
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a 266 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA 266 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe
Confidence 2578999999999999998753 223445554 66777777765
No 413
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=80.82 E-value=57 Score=32.32 Aligned_cols=125 Identities=19% Similarity=0.205 Sum_probs=79.0
Q ss_pred EEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcC-----CCC
Q 001109 598 LEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSN-----FGA 672 (1155)
Q Consensus 598 lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSp-----dg~ 672 (1155)
-.|......|+.++.-|.|.|++.......... .... ..+-.-+..|+||+-.+ +..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-----~~~~-------------i~~LNin~~italaaG~l~~~~~~D 65 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGR-----QDSD-------------ISFLNINQEITALAAGRLKPDDGRD 65 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCcccccccc-----ccCc-------------eeEEECCCceEEEEEEecCCCCCcC
Confidence 356666778999999999999987754321000 0000 12223456788886554 345
Q ss_pred EEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEE
Q 001109 673 RLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVV 752 (1155)
Q Consensus 673 ~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~v 752 (1155)
.|..|+... +-.||+....-++... -.++|.++.+...+. .+..++++ +-...|.-
T Consensus 66 ~LliGt~t~-llaYDV~~N~d~Fyke----~~DGvn~i~~g~~~~------------------~~~~l~iv-GGncsi~G 121 (136)
T PF14781_consen 66 CLLIGTQTS-LLAYDVENNSDLFYKE----VPDGVNAIVIGKLGD------------------IPSPLVIV-GGNCSIQG 121 (136)
T ss_pred EEEEeccce-EEEEEcccCchhhhhh----CccceeEEEEEecCC------------------CCCcEEEE-CceEEEEE
Confidence 788888665 8899999877665443 468899999975432 22444444 45667888
Q ss_pred EECCCCceeeee
Q 001109 753 CDSTTGHILFSR 764 (1155)
Q Consensus 753 wd~~tG~~l~~~ 764 (1155)
+|.+-.++.++-
T Consensus 122 fd~~G~e~fWtV 133 (136)
T PF14781_consen 122 FDYEGNEIFWTV 133 (136)
T ss_pred eCCCCcEEEEEe
Confidence 887755555543
No 414
>PRK13684 Ycf48-like protein; Provisional
Probab=80.81 E-value=65 Score=37.39 Aligned_cols=104 Identities=10% Similarity=0.035 Sum_probs=61.7
Q ss_pred CCCceEEEEcCCCCEEEEEEcCCeEEE-EccCCceEE-EEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceee
Q 001109 42 PSTASILAFDHVQSLLAIGTQDGRIKV-IGGDNIEGL-LVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITS 119 (1155)
Q Consensus 42 ~~~vs~lafsp~g~lLAsgs~DG~I~v-w~~~~~~~~-~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~ 119 (1155)
.+.+..++++|++.++++|. .|.+.. ++..+.... ........+..+.|.+++..++ ++..|.+.+=..+.|..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~-vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWM-LARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEE-EecCCEEEEccCCCCCccc
Confidence 45678899999998887775 466654 222222121 2233456789999999866544 4566766432334443322
Q ss_pred eecCC-----CceeEEEEecCCCEEEEEeCCCcE
Q 001109 120 TLPWE-----SNITAFSVIFGTSYMYIGDEYGMV 148 (1155)
Q Consensus 120 ~l~~~-----~~Vtsva~spd~~~l~~G~~dG~V 148 (1155)
....+ ..+.++++.|++..+++| .+|.|
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v 282 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTL 282 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEc-CCCeE
Confidence 22211 347888999887765544 56755
No 415
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=80.69 E-value=22 Score=42.43 Aligned_cols=112 Identities=15% Similarity=0.184 Sum_probs=66.6
Q ss_pred CeEEEEEecCCCeEEEE-eCCC----eEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEc
Q 001109 594 SVSALEFCSVTLNLAIG-SSSG----LVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFS 668 (1155)
Q Consensus 594 ~V~~lafspdg~~Lasg-s~dG----~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafS 668 (1155)
.+....+||||++||.+ +..| .++++|+.++.... ..+.. ..-..++|+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~------------------------d~i~~--~~~~~~~W~ 178 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP------------------------DGIEN--PKFSSVSWS 178 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE------------------------EEEEE--EESEEEEEC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC------------------------Ccccc--cccceEEEe
Confidence 44467899999999866 3334 58999998763210 01111 112349999
Q ss_pred CCCCEEEEEeCCC-----------cEEEEecCCcc----EEEEeccCCCCCCC--eeEEEEeecCCCCccccCCCCCCCC
Q 001109 669 NFGARLAVGFECS-----------QVAMLDISTFS----VLFITDSLSNSNSP--VLYLAVKSLSDTSNLTISPKDSDIN 731 (1155)
Q Consensus 669 pdg~~LAsGs~Dg-----------~V~lWDi~~~~----~l~~~~~~~~h~~~--V~slafs~~~~~~~~~~~~~~~~~~ 731 (1155)
+||+.|.....+. .|.+|.+.++. +++.. ...+ ..++..+
T Consensus 179 ~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~-----~~~~~~~~~~~~s------------------ 235 (414)
T PF02897_consen 179 DDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE-----PDEPFWFVSVSRS------------------ 235 (414)
T ss_dssp TTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC------TTCTTSEEEEEE-------------------
T ss_pred CCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee-----cCCCcEEEEEEec------------------
Confidence 9988766554433 37888887652 34322 2233 4456665
Q ss_pred CCCCCCCcEEEEEeC---C-ceEEEEECCCC
Q 001109 732 SSNDTKKETLFFMTK---D-AHIVVCDSTTG 758 (1155)
Q Consensus 732 ~~~~pd~~~L~s~s~---D-g~I~vwd~~tG 758 (1155)
+|+++|+..+. + ..+.+.|+..+
T Consensus 236 ----~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 236 ----KDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp ----TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred ----CcccEEEEEEEccccCCeEEEEecccc
Confidence 78888775432 2 45788888765
No 416
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=80.57 E-value=69 Score=40.58 Aligned_cols=102 Identities=14% Similarity=0.132 Sum_probs=66.6
Q ss_pred CCEEEEEEcCCeEEEEccCCceEEE------Ec-----------------CCCCCEEEEEE--EcCCcEEEEEecCCeEE
Q 001109 54 QSLLAIGTQDGRIKVIGGDNIEGLL------VS-----------------PKQLAFKHLEF--LQNQGFLVSISSGNEIQ 108 (1155)
Q Consensus 54 g~lLAsgs~DG~I~vw~~~~~~~~~------~~-----------------~~~~~V~~l~F--s~dg~~LvS~s~Dg~I~ 108 (1155)
+.+|.+|. .++|.||+.+....+. .. +....|..+.. .-+...|+.+.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 77888876 5799999765432211 00 01123444433 22345788999999999
Q ss_pred EEECCC-------C----c---------eeeeecCCCceeEEEEe--cCCCEEEEEeCCCcEEEEEecCC
Q 001109 109 LWDLEA-------R----R---------ITSTLPWESNITAFSVI--FGTSYMYIGDEYGMVYVLKYDTE 156 (1155)
Q Consensus 109 vWDl~t-------~----~---------~~~~l~~~~~Vtsva~s--pd~~~l~~G~~dG~V~vw~~d~~ 156 (1155)
+|.+++ . . +...+..+..++.++++ ...+++|+++....|.||.+...
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~ 197 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALV 197 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecc
Confidence 997622 0 0 11222334678899998 88899999999999999988774
No 417
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=80.48 E-value=1e+02 Score=34.33 Aligned_cols=122 Identities=15% Similarity=0.129 Sum_probs=76.8
Q ss_pred CCCcceeeccCCCCCceE--EEEcCCCCEEEEEEcCC--eEEEEccCCceEEEEc--CCCCCEEEEEEEcCCcEEEEEe-
Q 001109 30 DFDPRVTLHYGIPSTASI--LAFDHVQSLLAIGTQDG--RIKVIGGDNIEGLLVS--PKQLAFKHLEFLQNQGFLVSIS- 102 (1155)
Q Consensus 30 ~~~~~~~~~~G~~~~vs~--lafsp~g~lLAsgs~DG--~I~vw~~~~~~~~~~~--~~~~~V~~l~Fs~dg~~LvS~s- 102 (1155)
.+.+++...+.|...... |.|..+|.++-+.+.-| .|+.++..+++.+... +.+.-=..+....| .|.-..
T Consensus 30 ~~~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTW 107 (264)
T PF05096_consen 30 VYSYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTW 107 (264)
T ss_dssp EEEEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEES
T ss_pred eeeeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEe
Confidence 456677777788766543 88888888888887777 6778998877665433 33333345555544 455555
Q ss_pred cCCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCC
Q 001109 103 SGNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEE 157 (1155)
Q Consensus 103 ~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~ 157 (1155)
.++...+||..+-+.+.++..++.=..++ .|++.|+..+....+ +.+|+.+
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L--~~~dP~~ 158 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRL--YFLDPET 158 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEE--EEE-TTT
T ss_pred cCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccce--EEECCcc
Confidence 57899999999999888887765545555 577777766544444 5556654
No 418
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=78.40 E-value=30 Score=40.74 Aligned_cols=96 Identities=11% Similarity=0.104 Sum_probs=54.1
Q ss_pred CCceEEEEcCCCCEEEEEE-----------cCC-eEEEEccC---Cc--eEEEEcCCCCCEEEEEEEcCCcEEEEEecCC
Q 001109 43 STASILAFDHVQSLLAIGT-----------QDG-RIKVIGGD---NI--EGLLVSPKQLAFKHLEFLQNQGFLVSISSGN 105 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs-----------~DG-~I~vw~~~---~~--~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg 105 (1155)
.....|+|+++|+++++-. ..+ +|.++.-. +. +.......-.....++|.++| |+.++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4577899999999876642 223 88887532 21 111111222345789999987 44455444
Q ss_pred eEEEEECCC-------Ccee-eeecC-----CCceeEEEEecCCCEEE
Q 001109 106 EIQLWDLEA-------RRIT-STLPW-----ESNITAFSVIFGTSYMY 140 (1155)
Q Consensus 106 ~I~vWDl~t-------~~~~-~~l~~-----~~~Vtsva~spd~~~l~ 140 (1155)
-.++.|.+. .+.+ ..+.. +.....+++.|||.+.+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv 139 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYF 139 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEE
Confidence 333445432 1122 22322 23477899999987433
No 419
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=77.53 E-value=7.1 Score=29.44 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=25.1
Q ss_pred EEEEEeCCceEEEEECCCCceeeeeecccC
Q 001109 740 TLFFMTKDAHIVVCDSTTGHILFSRSIHHQ 769 (1155)
Q Consensus 740 ~L~s~s~Dg~I~vwd~~tG~~l~~~~~~~~ 769 (1155)
.++.++.||.|...|..||++++.....+.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSSG
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCCC
Confidence 467779999999999999999998855443
No 420
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=77.00 E-value=27 Score=40.49 Aligned_cols=101 Identities=19% Similarity=0.239 Sum_probs=56.6
Q ss_pred CceEEEEcCCCCEEEEEEcCCeEEEEccCCce--EEEEc-----CCCCCEEEEEEEcC---CcEEEE-EecC--------
Q 001109 44 TASILAFDHVQSLLAIGTQDGRIKVIGGDNIE--GLLVS-----PKQLAFKHLEFLQN---QGFLVS-ISSG-------- 104 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~--~~~~~-----~~~~~V~~l~Fs~d---g~~LvS-~s~D-------- 104 (1155)
..+.|+|.|||++|+ +...|+|++++.++.. .+... ........++|.|+ .++|.. .+..
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 467899999998876 4679999999844433 22222 12456789999994 234433 3321
Q ss_pred CeEEEEECCCC--c------eeeeecC----CCceeEEEEecCCCEEEEEeCCC
Q 001109 105 NEIQLWDLEAR--R------ITSTLPW----ESNITAFSVIFGTSYMYIGDEYG 146 (1155)
Q Consensus 105 g~I~vWDl~t~--~------~~~~l~~----~~~Vtsva~spd~~~l~~G~~dG 146 (1155)
..|.-|.+..+ . ++..+.. ...-..++|.||| .||++..++
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~ 134 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCC
Confidence 35555665544 1 1122222 2345679999999 555544443
No 421
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=76.65 E-value=8.3 Score=45.09 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=27.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccE
Q 001109 659 NSPICNLKFSNFGARLAVGFECSQVAMLDISTFSV 693 (1155)
Q Consensus 659 ~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~ 693 (1155)
...+....|||+|+.+|... ++.|.+++..++..
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 45678899999999999887 57799999877644
No 422
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=76.65 E-value=50 Score=42.29 Aligned_cols=78 Identities=17% Similarity=0.146 Sum_probs=55.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEecC----------Ccc--EE-EEec-----cCCCCCCCeeEEEEeecCCCCcc
Q 001109 660 SPICNLKFSNFGARLAVGFECSQVAMLDIS----------TFS--VL-FITD-----SLSNSNSPVLYLAVKSLSDTSNL 721 (1155)
Q Consensus 660 ~~VtslafSpdg~~LAsGs~Dg~V~lWDi~----------~~~--~l-~~~~-----~~~~h~~~V~slafs~~~~~~~~ 721 (1155)
-.|..|.+||+|++||..+..| |.|..+- ++. +. .+.. ..++++..|..+.|.|.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s----- 158 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS----- 158 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC-----
Confidence 3689999999999999999877 4454441 111 11 1111 113456689999999654
Q ss_pred ccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC
Q 001109 722 TISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 722 ~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t 757 (1155)
+.+..|++-+.|+++|++|+..
T Consensus 159 --------------~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 159 --------------ESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred --------------CCCCeEEEEecCCEEEEEecCC
Confidence 5578899999999999999864
No 423
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=76.17 E-value=25 Score=43.86 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=57.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCc
Q 001109 660 SPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKE 739 (1155)
Q Consensus 660 ~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~ 739 (1155)
...+-+.-|.-++..++-+....+.|||...+..-+... + ...++|..|.|.+. |||+
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~-f-~~~~~I~dLDWtst--------------------~d~q 87 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES-F-SEDDPIRDLDWTST--------------------PDGQ 87 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee-e-cCCCceeeceeeec--------------------CCCC
Confidence 456667777777766666666679999999887666543 2 35789999999842 8899
Q ss_pred EEEEEeCCceEEEEEC
Q 001109 740 TLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 740 ~L~s~s~Dg~I~vwd~ 755 (1155)
.+++.+....|.++--
T Consensus 88 siLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 88 SILAVGFPHHVLLYTQ 103 (631)
T ss_pred EEEEEEcCcEEEEEEc
Confidence 9999999999999864
No 424
>PRK13684 Ycf48-like protein; Provisional
Probab=76.05 E-value=81 Score=36.58 Aligned_cols=113 Identities=8% Similarity=-0.011 Sum_probs=63.0
Q ss_pred CCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeE-Ee--ecCCCCeEEEEEcC
Q 001109 593 ESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKA-LF--SVLNSPICNLKFSN 669 (1155)
Q Consensus 593 ~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~-~l--~~h~~~VtslafSp 669 (1155)
..++++.+.|+++.+++| ..|.+++=.-+.+. .|.. .. ..-...+.+++|.|
T Consensus 215 ~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~------------------------sW~~~~~~~~~~~~~l~~v~~~~ 269 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE------------------------SWSKPIIPEITNGYGYLDLAYRT 269 (334)
T ss_pred ccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC------------------------ccccccCCccccccceeeEEEcC
Confidence 478999999999887765 46765421122211 0000 00 00123578899999
Q ss_pred CCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCce
Q 001109 670 FGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAH 749 (1155)
Q Consensus 670 dg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~ 749 (1155)
+++.+++|. +|.|. .....+..-...+...+-....+.+.|. . +..++.++..|.
T Consensus 270 ~~~~~~~G~-~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~----------------------~-~~~~~~~G~~G~ 324 (334)
T PRK13684 270 PGEIWAGGG-NGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFL----------------------D-PEKGFVLGQRGV 324 (334)
T ss_pred CCCEEEEcC-CCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEe----------------------C-CCceEEECCCce
Confidence 988776664 66553 4444443322211112233457777775 2 234566778888
Q ss_pred EEEEEC
Q 001109 750 IVVCDS 755 (1155)
Q Consensus 750 I~vwd~ 755 (1155)
|..++.
T Consensus 325 il~~~~ 330 (334)
T PRK13684 325 LLRYVG 330 (334)
T ss_pred EEEecC
Confidence 888774
No 425
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.83 E-value=14 Score=40.14 Aligned_cols=66 Identities=14% Similarity=0.068 Sum_probs=46.1
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc---------------CCCCCEEEEEEEcCCcEEEEEecCCeEEEEEC
Q 001109 48 LAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS---------------PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDL 112 (1155)
Q Consensus 48 lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~---------------~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl 112 (1155)
+.+...+++|.+-+.+|.+++||......++.. .....|..+.++.+|--||+-+ +|....||.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 346667889999999999999999887665432 1234677777777766666655 456677775
Q ss_pred CC
Q 001109 113 EA 114 (1155)
Q Consensus 113 ~t 114 (1155)
+-
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 43
No 426
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=75.64 E-value=0.42 Score=59.10 Aligned_cols=83 Identities=11% Similarity=0.043 Sum_probs=47.0
Q ss_pred EecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCC--CceeEEeecCCCCeEEEEEcCCCCEEEEE
Q 001109 600 FCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDG--PQCKALFSVLNSPICNLKFSNFGARLAVG 677 (1155)
Q Consensus 600 fspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g--~~~~~~l~~h~~~VtslafSpdg~~LAsG 677 (1155)
+||||+.+|.+..||.|++|.+.-.... ...+++.|+..++ ..|.. +..|.-.+-.+.| .++++++
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~--------~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~---w~~~Itt 310 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKI--------VHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGK---WVLRITT 310 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccc--------cHhhhhccCCCCCCCceeee-eccccccCCccce---eEEEEec
Confidence 7999999999999999999987532110 1112333332221 11222 2223222222222 3455655
Q ss_pred eC-CCcEEEEecCCccEE
Q 001109 678 FE-CSQVAMLDISTFSVL 694 (1155)
Q Consensus 678 s~-Dg~V~lWDi~~~~~l 694 (1155)
+. +.-+++|.-...+|+
T Consensus 311 td~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 311 TDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccCCcceeEeeccchhhh
Confidence 54 455899998877776
No 427
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=73.76 E-value=1.3e+02 Score=35.94 Aligned_cols=151 Identities=9% Similarity=0.019 Sum_probs=80.1
Q ss_pred cCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcc
Q 001109 547 DYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSN 626 (1155)
Q Consensus 547 ~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~ 626 (1155)
..+++.+++.|..-...+-||-....-.++. . .....++++.|.+++..++++ ..|.+.. ....+..
T Consensus 246 ~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~-~----------~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~ 312 (398)
T PLN00033 246 RSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN-R----------ASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLT 312 (398)
T ss_pred EcCCCCEEEEECCccEEEecCCCCcceEEec-C----------CCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCc
Confidence 4467777777664444555664332101110 1 223478999999999877665 5666533 2222210
Q ss_pred ccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCC
Q 001109 627 EETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSP 706 (1155)
Q Consensus 627 ~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~ 706 (1155)
.....| .. .....-...++++.|.+++..+|+|. +|.|....-...+... .....+....
T Consensus 313 ~~~~~f--------~~----------~~~~~~~~~l~~v~~~~d~~~~a~G~-~G~v~~s~D~G~tW~~-~~~~~~~~~~ 372 (398)
T PLN00033 313 EEDFDF--------EE----------ADIKSRGFGILDVGYRSKKEAWAAGG-SGILLRSTDGGKSWKR-DKGADNIAAN 372 (398)
T ss_pred ccccce--------ee----------cccCCCCcceEEEEEcCCCcEEEEEC-CCcEEEeCCCCcceeE-ccccCCCCcc
Confidence 000000 00 00011123589999999988776664 6766655433323222 1112344567
Q ss_pred eeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEE
Q 001109 707 VLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVC 753 (1155)
Q Consensus 707 V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vw 753 (1155)
.+++.|. ++ ...++.+.+|.|.-|
T Consensus 373 ly~v~f~----------------------~~-~~g~~~G~~G~il~~ 396 (398)
T PLN00033 373 LYSVKFF----------------------DD-KKGFVLGNDGVLLRY 396 (398)
T ss_pred eeEEEEc----------------------CC-CceEEEeCCcEEEEe
Confidence 8889886 22 346667788887665
No 428
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=72.88 E-value=8.5 Score=30.07 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=26.3
Q ss_pred CeEEEEEecCCC---eEEEEeCCCeEEEEEecc
Q 001109 594 SVSALEFCSVTL---NLAIGSSSGLVWLYNLIK 623 (1155)
Q Consensus 594 ~V~~lafspdg~---~Lasgs~dG~V~lwd~~~ 623 (1155)
+|.++.|||+.. +||.+-..|.|.|+|+..
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 689999998655 889888889999999985
No 429
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=72.63 E-value=14 Score=38.49 Aligned_cols=36 Identities=11% Similarity=0.054 Sum_probs=26.7
Q ss_pred CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC
Q 001109 706 PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 706 ~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t 757 (1155)
.|.+++||+.+.. ..-+-+|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~----------------~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLG----------------PNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCC----------------CCCceEEEEEcCCCeEEEEecCC
Confidence 6778888865432 02367889999999999998764
No 430
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=72.01 E-value=57 Score=37.66 Aligned_cols=104 Identities=17% Similarity=0.199 Sum_probs=62.9
Q ss_pred CCCceEEEEcCCCCEEEEEEcCCe------EEEEccCC-------ceEE----EEcCCCC-------CEEEEEEEcCCcE
Q 001109 42 PSTASILAFDHVQSLLAIGTQDGR------IKVIGGDN-------IEGL----LVSPKQL-------AFKHLEFLQNQGF 97 (1155)
Q Consensus 42 ~~~vs~lafsp~g~lLAsgs~DG~------I~vw~~~~-------~~~~----~~~~~~~-------~V~~l~Fs~dg~~ 97 (1155)
-+..+.|+++|++..+.+-+.+|. +..+.... .... +.-+... -..+|++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 367899999965544444466666 44443221 1111 1111111 2337888888887
Q ss_pred EEEEecC------CeEEEEECCCCceeeeec----------------CCCceeEEEEecCCCEEEEEeCCC
Q 001109 98 LVSISSG------NEIQLWDLEARRITSTLP----------------WESNITAFSVIFGTSYMYIGDEYG 146 (1155)
Q Consensus 98 LvS~s~D------g~I~vWDl~t~~~~~~l~----------------~~~~Vtsva~spd~~~l~~G~~dG 146 (1155)
+++-=.+ ..|...|.. |+.+..+. ......+++++|+|+.|++..+..
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~ 168 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESP 168 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECcc
Confidence 7776666 778888876 66554432 113578999999999888776544
No 431
>PHA02713 hypothetical protein; Provisional
Probab=71.13 E-value=71 Score=39.89 Aligned_cols=65 Identities=12% Similarity=0.005 Sum_probs=35.0
Q ss_pred CcCcEEEEEECC------CcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCC-----eEE
Q 001109 549 LVERLYIAGYRD------GSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSG-----LVW 617 (1155)
Q Consensus 549 ~~~~lLaTgs~D------gtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG-----~V~ 617 (1155)
-++.+++.|+.+ .+|..+|.....-..+..+. ..+.. ..+..-+|+..|+|+.+| +|.
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~---------~~R~~--~~~~~~~g~IYviGG~~~~~~~~sve 370 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMI---------KNRCR--FSLAVIDDTIYAIGGQNGTNVERTIE 370 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCc---------chhhc--eeEEEECCEEEEECCcCCCCCCceEE
Confidence 456788888864 24666776655421111110 00111 112234678888888764 377
Q ss_pred EEEeccC
Q 001109 618 LYNLIKS 624 (1155)
Q Consensus 618 lwd~~~~ 624 (1155)
.||..++
T Consensus 371 ~Ydp~~~ 377 (557)
T PHA02713 371 CYTMGDD 377 (557)
T ss_pred EEECCCC
Confidence 7887664
No 432
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.08 E-value=55 Score=42.79 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=42.2
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEccCCceEE------------------EEcCCCCCEEEEEEEcCCcEEEEEe--cCC
Q 001109 46 SILAFDHVQSLLAIGTQDGRIKVIGGDNIEGL------------------LVSPKQLAFKHLEFLQNQGFLVSIS--SGN 105 (1155)
Q Consensus 46 s~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~------------------~~~~~~~~V~~l~Fs~dg~~LvS~s--~Dg 105 (1155)
+.++.++.-.++.++...+.+.|++..+.... +..+...++..+...+|+...+... .+-
T Consensus 45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~ 124 (1405)
T KOG3630|consen 45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE 124 (1405)
T ss_pred hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence 44777887777777777788888765443211 1122234555666666765555443 334
Q ss_pred eEEEEECCCC
Q 001109 106 EIQLWDLEAR 115 (1155)
Q Consensus 106 ~I~vWDl~t~ 115 (1155)
.|..+|+++-
T Consensus 125 ~v~~fD~~~f 134 (1405)
T KOG3630|consen 125 AVYSFDLEEF 134 (1405)
T ss_pred eEEEEehHhh
Confidence 7889998753
No 433
>PRK10115 protease 2; Provisional
Probab=70.66 E-value=40 Score=43.26 Aligned_cols=117 Identities=6% Similarity=-0.054 Sum_probs=66.2
Q ss_pred CCCCcceeeccCCCCCceEEEEcCCCCEEEEEEcC-----CeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEec
Q 001109 29 KDFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQD-----GRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISS 103 (1155)
Q Consensus 29 ~~~~~~~~~~~G~~~~vs~lafsp~g~lLAsgs~D-----G~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~ 103 (1155)
..+|+......+-.-.+..+.+||||++||.+... -+|++.+..+++.+...-.... ..++|++|+..|+-...
T Consensus 113 ~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 113 TLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEe
Confidence 34555443221112446678899999999987654 3688888766543221111112 45899999876554432
Q ss_pred -C-----CeEEEEECCCC--ceeeeecC-CCcee-EEEEecCCCEEEEEeCCC
Q 001109 104 -G-----NEIQLWDLEAR--RITSTLPW-ESNIT-AFSVIFGTSYMYIGDEYG 146 (1155)
Q Consensus 104 -D-----g~I~vWDl~t~--~~~~~l~~-~~~Vt-sva~spd~~~l~~G~~dG 146 (1155)
+ ..|.+|++.++ +....+.. ..... .+..+.+++++++.+.++
T Consensus 192 ~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~ 244 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA 244 (686)
T ss_pred cCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC
Confidence 2 36888888887 32222322 22222 333445888777665443
No 434
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=70.61 E-value=2.4e+02 Score=33.79 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=63.4
Q ss_pred CcCcEEEEEECCCcEEEEeCCCCCeeee-eeeCCCcCccccCCCCCCeEEEEEec-----CCCeEEEEeCCCeEEEEEec
Q 001109 549 LVERLYIAGYRDGSTRIWDATYPTLSLI-HVFGSELPGIRTATESESVSALEFCS-----VTLNLAIGSSSGLVWLYNLI 622 (1155)
Q Consensus 549 ~~~~lLaTgs~DgtVrlWD~~~~~l~~l-~~l~~~~~~i~~~gh~~~V~~lafsp-----dg~~Lasgs~dG~V~lwd~~ 622 (1155)
.+...++.||..|.+||++-......+. ..++.++ +.||..|+.-. +...||+= .-..+.||.+.
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l--------~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~ 105 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL--------KDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVS 105 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEEec--------CCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEE
Confidence 4556899999999999999865442211 1122221 13777776543 23456653 35678888884
Q ss_pred cCccccceeeeccCCceEEEecCCCCCceeEEeecC--CCCeEEEEEcC----C-CCEEEEEeCCCcEEEEecCCcc
Q 001109 623 KSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVL--NSPICNLKFSN----F-GARLAVGFECSQVAMLDISTFS 692 (1155)
Q Consensus 623 ~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h--~~~VtslafSp----d-g~~LAsGs~Dg~V~lWDi~~~~ 692 (1155)
....... ..+...+. ....| +.....+.+-| . -.++.+=+.||.+.+++-+.-.
T Consensus 106 ~~~g~~~----~g~~~~L~------------~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~ 166 (418)
T PF14727_consen 106 LVDGTVE----HGNQYQLE------------LIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA 166 (418)
T ss_pred ecCCCcc----cCcEEEEE------------EEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE
Confidence 4221100 00000011 11112 12222333333 2 2478999999999999987643
No 435
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=70.48 E-value=1.9e+02 Score=37.53 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=25.1
Q ss_pred EEEEEeCCceEEEEECCCCceeeeeecc
Q 001109 740 TLFFMTKDAHIVVCDSTTGHILFSRSIH 767 (1155)
Q Consensus 740 ~L~s~s~Dg~I~vwd~~tG~~l~~~~~~ 767 (1155)
.|+.++++|.+.++|..||+.|...+..
T Consensus 461 ~v~~~~K~G~~~vlDr~tG~~l~~~~e~ 488 (764)
T TIGR03074 461 ALVAPTKQGQIYVLDRRTGEPIVPVEEV 488 (764)
T ss_pred EEEEECCCCEEEEEECCCCCEEeeceee
Confidence 8999999999999999999999876444
No 436
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=70.16 E-value=51 Score=35.59 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=64.4
Q ss_pred ceEEEEcCCCCE-EEEEEcCCeEEEEc--cCCc-----eEEEEcCC----CCC-EEEEEEEcCCcEEEEEecCCeEEEEE
Q 001109 45 ASILAFDHVQSL-LAIGTQDGRIKVIG--GDNI-----EGLLVSPK----QLA-FKHLEFLQNQGFLVSISSGNEIQLWD 111 (1155)
Q Consensus 45 vs~lafsp~g~l-LAsgs~DG~I~vw~--~~~~-----~~~~~~~~----~~~-V~~l~Fs~dg~~LvS~s~Dg~I~vWD 111 (1155)
.+.|+||.+.+. -.+-+.+-+|.-|+ .+++ ..++.+.. ... --.+....+|...+++=..++|.-.|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 456889988864 44566777887787 3332 22332211 111 11233455666666666789999999
Q ss_pred CCCCceeeeecCC-CceeEEEEe-cCCCEEEEEe
Q 001109 112 LEARRITSTLPWE-SNITAFSVI-FGTSYMYIGD 143 (1155)
Q Consensus 112 l~t~~~~~~l~~~-~~Vtsva~s-pd~~~l~~G~ 143 (1155)
..+|+++.++..+ .+|+|++|- ++-..|++.+
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 9999999998877 789999995 4445666544
No 437
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=68.81 E-value=8.9 Score=27.49 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.9
Q ss_pred cEEEEEeCCceEEEEECCCCceeeee
Q 001109 739 ETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 739 ~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
..++.++.|+.+..+|..+|+.++..
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36888999999999999999998764
No 438
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=68.01 E-value=17 Score=27.43 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=28.3
Q ss_pred cCCcEEEEEe-cCCeEEEEECCCCceeeeecCCCceeEEEE
Q 001109 93 QNQGFLVSIS-SGNEIQLWDLEARRITSTLPWESNITAFSV 132 (1155)
Q Consensus 93 ~dg~~LvS~s-~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~ 132 (1155)
|++++|+.++ .+++|.++|+.+++.+..+........++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 5677777766 478999999999988877765433444444
No 439
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=66.63 E-value=4e+02 Score=34.87 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=73.4
Q ss_pred CeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCE
Q 001109 594 SVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGAR 673 (1155)
Q Consensus 594 ~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~ 673 (1155)
.|.++.. -+|++||. -...|++|++..++.. ..-..|..++.++...-.|..
T Consensus 831 av~aL~~-fngkllA~--In~~vrLye~t~~~eL-------------------------r~e~~~~~~~~aL~l~v~gde 882 (1096)
T KOG1897|consen 831 AVYALVE-FNGKLLAG--INQSVRLYEWTTEREL-------------------------RIECNISNPIIALDLQVKGDE 882 (1096)
T ss_pred ceeehhh-hCCeEEEe--cCcEEEEEEcccccee-------------------------hhhhcccCCeEEEEEEecCcE
Confidence 5555532 35666654 4558999999875321 111357778999999999999
Q ss_pred EEEEeCCCcEEEEecCCcc--EEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEE
Q 001109 674 LAVGFECSQVAMLDISTFS--VLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIV 751 (1155)
Q Consensus 674 LAsGs~Dg~V~lWDi~~~~--~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~ 751 (1155)
+|+|+.=+.|.+.-.+... .....+ .-+..+.+++.+- |+...+-+..+|.++
T Consensus 883 I~VgDlm~Sitll~y~~~eg~f~evAr--D~~p~Wmtaveil-----------------------~~d~ylgae~~gNlf 937 (1096)
T KOG1897|consen 883 IAVGDLMRSITLLQYKGDEGNFEEVAR--DYNPNWMTAVEIL-----------------------DDDTYLGAENSGNLF 937 (1096)
T ss_pred EEEeeccceEEEEEEeccCCceEEeeh--hhCccceeeEEEe-----------------------cCceEEeecccccEE
Confidence 9999999999887665533 322111 1266677777774 456677788888887
Q ss_pred EEECC
Q 001109 752 VCDST 756 (1155)
Q Consensus 752 vwd~~ 756 (1155)
+.-.+
T Consensus 938 ~v~~d 942 (1096)
T KOG1897|consen 938 TVRKD 942 (1096)
T ss_pred EEEec
Confidence 76543
No 440
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=66.34 E-value=91 Score=36.63 Aligned_cols=18 Identities=11% Similarity=-0.138 Sum_probs=14.3
Q ss_pred CeEEEEEecCCCeEEEEe
Q 001109 594 SVSALEFCSVTLNLAIGS 611 (1155)
Q Consensus 594 ~V~~lafspdg~~Lasgs 611 (1155)
...+|+|+++|+++++-.
T Consensus 15 ~P~~ia~d~~G~l~V~e~ 32 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEG 32 (367)
T ss_pred CCceeeECCCCCEEEEeC
Confidence 457899999999877653
No 441
>PHA02790 Kelch-like protein; Provisional
Probab=66.03 E-value=83 Score=38.51 Aligned_cols=65 Identities=12% Similarity=0.014 Sum_probs=35.9
Q ss_pred CcCcEEEEEECCC--cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCC---eEEEEEecc
Q 001109 549 LVERLYIAGYRDG--STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSG---LVWLYNLIK 623 (1155)
Q Consensus 549 ~~~~lLaTgs~Dg--tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG---~V~lwd~~~ 623 (1155)
-++.+++.|+.++ +|..||........+..+. .... ...+..-+|+..|+|+.++ .+..||..+
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~---------~~r~--~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL---------KPRC--NPAVASINNVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCC---------CCCc--ccEEEEECCEEEEecCcCCCCccEEEEeCCC
Confidence 4677888888643 5888887655422211111 0001 1112234678888888664 366777655
Q ss_pred C
Q 001109 624 S 624 (1155)
Q Consensus 624 ~ 624 (1155)
+
T Consensus 386 ~ 386 (480)
T PHA02790 386 D 386 (480)
T ss_pred C
Confidence 3
No 442
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=65.75 E-value=66 Score=36.27 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=51.5
Q ss_pred CCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEe------CCCcEEEE
Q 001109 613 SGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGF------ECSQVAML 686 (1155)
Q Consensus 613 dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs------~Dg~V~lW 686 (1155)
+..|++||..... |...-.+-++.|++|.|..+.+++|+|. ....+..|
T Consensus 15 C~~lC~yd~~~~q-------------------------W~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~y 69 (281)
T PF12768_consen 15 CPGLCLYDTDNSQ-------------------------WSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATY 69 (281)
T ss_pred CCEEEEEECCCCE-------------------------eecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEE
Confidence 4568999987642 2233344678899999998888888876 46678899
Q ss_pred ecCCccEEEEeccC-CCCCCCeeEEEEe
Q 001109 687 DISTFSVLFITDSL-SNSNSPVLYLAVK 713 (1155)
Q Consensus 687 Di~~~~~l~~~~~~-~~h~~~V~slafs 713 (1155)
|..+.+.-...... ....++|..+.+.
T Consensus 70 d~~~~~w~~~~~~~s~~ipgpv~a~~~~ 97 (281)
T PF12768_consen 70 DFKNQTWSSLGGGSSNSIPGPVTALTFI 97 (281)
T ss_pred ecCCCeeeecCCcccccCCCcEEEEEee
Confidence 99887653211111 1245789988885
No 443
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.72 E-value=84 Score=37.75 Aligned_cols=98 Identities=10% Similarity=0.111 Sum_probs=60.0
Q ss_pred CCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceE--EEecCCCCCceeEEeec-CCCCeEEEEEcC
Q 001109 593 ESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEV--HILPGGDGPQCKALFSV-LNSPICNLKFSN 669 (1155)
Q Consensus 593 ~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~--~~~~~~~g~~~~~~l~~-h~~~VtslafSp 669 (1155)
..|..|..++.|..+|-.+.+|.+.++=.......+. ..++...+ .++..+. ..|.. ..-.+..++|.|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~---~eDgk~~v~CRt~~i~~-----~~ftss~~ltl~Qa~WHP 175 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSE---FEDGKSTVNCRTTPVAE-----RFFTSSTSLTLKQAAWHP 175 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccce---ecCCCceEEEEeecccc-----eeeccCCceeeeeccccC
Confidence 3688899999999999999999887765322111100 00000000 0000000 11111 122466788999
Q ss_pred CC---CEEEEEeCCCcEEEEecCCccEEEEec
Q 001109 670 FG---ARLAVGFECSQVAMLDISTFSVLFITD 698 (1155)
Q Consensus 670 dg---~~LAsGs~Dg~V~lWDi~~~~~l~~~~ 698 (1155)
++ .+|..=+.|.+|+|||+...+.+|...
T Consensus 176 ~S~~D~hL~iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 176 SSILDPHLVLLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred CccCCceEEEEecCcEEEEEecCCcchhhccC
Confidence 86 678888899999999999988887543
No 444
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=65.11 E-value=24 Score=26.59 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=25.2
Q ss_pred CCCcEEEEEe-CCceEEEEECCCCceeeeeec
Q 001109 736 TKKETLFFMT-KDAHIVVCDSTTGHILFSRSI 766 (1155)
Q Consensus 736 pd~~~L~s~s-~Dg~I~vwd~~tG~~l~~~~~ 766 (1155)
||++.|+++. .+++|.++|..+++.+....+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 4677777655 588999999999999988866
No 445
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=64.58 E-value=90 Score=38.23 Aligned_cols=118 Identities=10% Similarity=0.067 Sum_probs=75.3
Q ss_pred CCCCCceEEEEcCCC-----CEEEEEEcCCeEEEEccC--C---ceEEE----EcCCCCCE--EEEEEEcCCcEEEEEec
Q 001109 40 GIPSTASILAFDHVQ-----SLLAIGTQDGRIKVIGGD--N---IEGLL----VSPKQLAF--KHLEFLQNQGFLVSISS 103 (1155)
Q Consensus 40 G~~~~vs~lafsp~g-----~lLAsgs~DG~I~vw~~~--~---~~~~~----~~~~~~~V--~~l~Fs~dg~~LvS~s~ 103 (1155)
|.-..|..++|.|-+ .+||+-.. ..|.||..- . ...+. .....-+| ..+.|.|....|+.-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHk-khVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHK-KHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEecc-ceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence 444568899999864 58888655 579999643 1 11111 11111122 46678898776666555
Q ss_pred CCeEEEEECC--CCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCce
Q 001109 104 GNEIQLWDLE--ARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGK 159 (1155)
Q Consensus 104 Dg~I~vWDl~--t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~ 159 (1155)
...=.+.++. ..+...-+...+.|.|.+|.+||+.|+++-.. .++-+.||.....
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~qKt 189 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSAQKT 189 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCC-eEEEEEecCchhh
Confidence 5444566654 33445567788999999999999999887654 4565666765533
No 446
>PHA03098 kelch-like protein; Provisional
Probab=62.35 E-value=83 Score=38.96 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=34.3
Q ss_pred CcCcEEEEEECC-----CcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCC------CeEE
Q 001109 549 LVERLYIAGYRD-----GSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSS------GLVW 617 (1155)
Q Consensus 549 ~~~~lLaTgs~D-----gtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~d------G~V~ 617 (1155)
-++++++.|+.+ .++..||..+..-..+..+... ..+| ++ ..-+++..+.|+.+ ..|.
T Consensus 341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~-----r~~~-----~~-~~~~~~iYv~GG~~~~~~~~~~v~ 409 (534)
T PHA03098 341 FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP-----RYNP-----CV-VNVNNLIYVIGGISKNDELLKTVE 409 (534)
T ss_pred ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC-----Cccc-----eE-EEECCEEEEECCcCCCCcccceEE
Confidence 356788888876 3466777766553211111100 0011 11 22367777887742 3577
Q ss_pred EEEeccC
Q 001109 618 LYNLIKS 624 (1155)
Q Consensus 618 lwd~~~~ 624 (1155)
.||+.++
T Consensus 410 ~yd~~t~ 416 (534)
T PHA03098 410 CFSLNTN 416 (534)
T ss_pred EEeCCCC
Confidence 7777654
No 447
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=62.30 E-value=2.8e+02 Score=31.55 Aligned_cols=117 Identities=16% Similarity=0.279 Sum_probs=70.5
Q ss_pred cCCCCcceeeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccC-----Cc--eEEEEcC------CCCCEEEEEEEcC
Q 001109 28 SKDFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGD-----NI--EGLLVSP------KQLAFKHLEFLQN 94 (1155)
Q Consensus 28 ~~~~~~~~~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~-----~~--~~~~~~~------~~~~V~~l~Fs~d 94 (1155)
....|+...+-+| |+|+|.+.+-++....+...+|+.. +. ..+...+ .....+.+.|+..
T Consensus 15 A~~tDp~L~N~WG-------ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~ 87 (336)
T TIGR03118 15 AQIVDPGLRNAWG-------LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGS 87 (336)
T ss_pred ccccCccccccce-------eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCC
Confidence 4556666666555 7999999887777778999999876 21 2222222 2346778888755
Q ss_pred CcE------------EEEEecCCeEEEEECCCCce-----eeeec-C-CCce-eEEEEe--cCCCEEEEEe-CCCcEEEE
Q 001109 95 QGF------------LVSISSGNEIQLWDLEARRI-----TSTLP-W-ESNI-TAFSVI--FGTSYMYIGD-EYGMVYVL 151 (1155)
Q Consensus 95 g~~------------LvS~s~Dg~I~vWDl~t~~~-----~~~l~-~-~~~V-tsva~s--pd~~~l~~G~-~dG~V~vw 151 (1155)
..+ ++-+++||+|.=|...-... .-.+. . .+.| +-+++. ..+++||.+. .+|+|.|+
T Consensus 88 ~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVF 167 (336)
T TIGR03118 88 DTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVF 167 (336)
T ss_pred CceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEe
Confidence 444 45678899999998543322 11111 1 1222 334443 4467777664 45777665
No 448
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=61.96 E-value=52 Score=40.74 Aligned_cols=63 Identities=5% Similarity=-0.107 Sum_probs=37.9
Q ss_pred eEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCCCce
Q 001109 65 RIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESNI 127 (1155)
Q Consensus 65 ~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~V 127 (1155)
.|.-+|..+.+.....+...+...=...-.++.++.++.+|.++.+|.+||+.+..++..+.+
T Consensus 442 ~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~ 504 (527)
T TIGR03075 442 SLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGI 504 (527)
T ss_pred eEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCc
Confidence 344455555555554433222111112224456677778999999999999999887765433
No 449
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=59.05 E-value=5.2e+02 Score=33.64 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=33.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEE
Q 001109 658 LNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLF 695 (1155)
Q Consensus 658 h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~ 695 (1155)
.++.|.+|....-+..|+....||+|.+.|..+.+.+.
T Consensus 258 ~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~ 295 (753)
T PF11635_consen 258 LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELN 295 (753)
T ss_pred cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhc
Confidence 35679999999999999999999999999998876554
No 450
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=58.44 E-value=1.8e+02 Score=34.23 Aligned_cols=79 Identities=19% Similarity=0.085 Sum_probs=35.9
Q ss_pred EEEcCCcEEEEEe-cCC--eEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccce
Q 001109 90 EFLQNQGFLVSIS-SGN--EIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPY 165 (1155)
Q Consensus 90 ~Fs~dg~~LvS~s-~Dg--~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~ 165 (1155)
+|.+||.+|+-++ .|| .+.+-||++++..+--.+. ...-...++|+++.++---....| +.+|+++.+.. .-|
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l--~~vdL~T~e~~-~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSL--RRVDLDTLEER-VVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEE--EEEETTT--EE-EEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeE--EEEECCcCcEE-EEE
Confidence 4678887666554 454 4677788898766544333 112234566887876433333444 55565443221 226
Q ss_pred eccCCc
Q 001109 166 YVPKDV 171 (1155)
Q Consensus 166 ~i~~~~ 171 (1155)
.+|...
T Consensus 119 ~~p~~~ 124 (386)
T PF14583_consen 119 EVPDDW 124 (386)
T ss_dssp E--TTE
T ss_pred ECCccc
Confidence 666553
No 451
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=58.42 E-value=1.1e+02 Score=35.53 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=21.8
Q ss_pred CeEEEEEecCCCeEEEEeCCCeEEEEE
Q 001109 594 SVSALEFCSVTLNLAIGSSSGLVWLYN 620 (1155)
Q Consensus 594 ~V~~lafspdg~~Lasgs~dG~V~lwd 620 (1155)
.-++|+|.|||+++++ ...|.|++++
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~ 28 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD 28 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence 4589999999987664 6699999999
No 452
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.79 E-value=1.1e+02 Score=36.10 Aligned_cols=97 Identities=12% Similarity=0.078 Sum_probs=60.3
Q ss_pred CCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCC
Q 001109 592 SESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFG 671 (1155)
Q Consensus 592 ~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg 671 (1155)
.++|.++.||+|++.||+.-.+.+|.++.+........ . ...-...+..|....|+.+
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~-----------~----------~~~ck~k~~~IlGF~W~~s- 123 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE-----------Y----------TQECKTKNANILGFCWTSS- 123 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH-----------H----------HHHhccCcceeEEEEEecC-
Confidence 45999999999999999999999999999865321100 0 0011223445777777766
Q ss_pred CEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEe
Q 001109 672 ARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVK 713 (1155)
Q Consensus 672 ~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs 713 (1155)
.-+|.-+..| +-++-+..- ..+.+....|+..|.=-.|.
T Consensus 124 ~e~A~i~~~G-~e~y~v~pe--krslRlVks~~~nvnWy~yc 162 (657)
T KOG2377|consen 124 TEIAFITDQG-IEFYQVLPE--KRSLRLVKSHNLNVNWYMYC 162 (657)
T ss_pred eeEEEEecCC-eEEEEEchh--hhhhhhhhhcccCccEEEEc
Confidence 4566666556 666655432 12223334466666655665
No 453
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=57.17 E-value=31 Score=41.03 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=45.1
Q ss_pred CEEEEEEcCCeEEEEccCCceEEEEcCC-CCCEEEEEEEcCCcEEEEEecCCeEEEEECC
Q 001109 55 SLLAIGTQDGRIKVIGGDNIEGLLVSPK-QLAFKHLEFLQNQGFLVSISSGNEIQLWDLE 113 (1155)
Q Consensus 55 ~lLAsgs~DG~I~vw~~~~~~~~~~~~~-~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~ 113 (1155)
.++|+|+..|.|++||.-+...-..++. ..+|..+..+.+|.++++.| .+.+-+-|+.
T Consensus 574 GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 5999999999999999876554333333 56899999999999988877 5677777764
No 454
>PHA03098 kelch-like protein; Provisional
Probab=56.71 E-value=1.1e+02 Score=37.76 Aligned_cols=65 Identities=14% Similarity=0.046 Sum_probs=34.1
Q ss_pred CcCcEEEEEECCC------cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCC-----eEE
Q 001109 549 LVERLYIAGYRDG------STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSG-----LVW 617 (1155)
Q Consensus 549 ~~~~lLaTgs~Dg------tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG-----~V~ 617 (1155)
.++.+++.|+.++ .+..||..+.....+..+. ..+.....+ .-+++..+.|+.++ .|.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~---------~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~ 361 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELI---------YPRKNPGVT--VFNNRIYVIGGIYNSISLNTVE 361 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCC---------cccccceEE--EECCEEEEEeCCCCCEecceEE
Confidence 4566888887653 4667777665532111111 011112222 23677888888763 455
Q ss_pred EEEeccC
Q 001109 618 LYNLIKS 624 (1155)
Q Consensus 618 lwd~~~~ 624 (1155)
.||+.++
T Consensus 362 ~yd~~~~ 368 (534)
T PHA03098 362 SWKPGES 368 (534)
T ss_pred EEcCCCC
Confidence 6666543
No 455
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=56.57 E-value=1.5e+02 Score=35.78 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=36.7
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceE--EEEc------CCCCCEEEEEEEcC
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEG--LLVS------PKQLAFKHLEFLQN 94 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~--~~~~------~~~~~V~~l~Fs~d 94 (1155)
.|. .....|+|.|||++|++--..|+|++++..+... +... ........|+|+|+
T Consensus 27 ~GL-~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 27 SGL-NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCC-CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 444 4678899999998876654469999997543321 1111 12456788999887
No 456
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=55.78 E-value=97 Score=38.91 Aligned_cols=104 Identities=7% Similarity=0.080 Sum_probs=70.3
Q ss_pred eeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEE--EcCCCCCEEEEEE--EcCCcEEEEEecCCeEEEEE
Q 001109 36 TLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLL--VSPKQLAFKHLEF--LQNQGFLVSISSGNEIQLWD 111 (1155)
Q Consensus 36 ~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~--~~~~~~~V~~l~F--s~dg~~LvS~s~Dg~I~vWD 111 (1155)
.+..|.. .++.+.-|..++...+-+..-++.|||..+...-+ .+...+.|.+|.| .|++..+++++-.+.|.++-
T Consensus 24 ~~~T~i~-~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 24 TFETGIS-NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEecCCC-CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3445553 56667777777776666556789999998765433 2344779999987 56889999999999999986
Q ss_pred CCCC---------ceeeeec----CCCceeEEEEecCCCEEE
Q 001109 112 LEAR---------RITSTLP----WESNITAFSVIFGTSYMY 140 (1155)
Q Consensus 112 l~t~---------~~~~~l~----~~~~Vtsva~spd~~~l~ 140 (1155)
-... ..+..+. .+.+|.+..+.++|.+++
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV 144 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV 144 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEE
Confidence 3211 1222221 125688888888886654
No 457
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=55.34 E-value=2e+02 Score=36.04 Aligned_cols=158 Identities=16% Similarity=0.105 Sum_probs=82.7
Q ss_pred CcCcEEEEEECC------CcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCe-----EE
Q 001109 549 LVERLYIAGYRD------GSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGL-----VW 617 (1155)
Q Consensus 549 ~~~~lLaTgs~D------gtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~-----V~ 617 (1155)
-++.++++|+.| .+|..+|....+-..+..+. ...+...+.. -+|.+.|+|+.||. |.
T Consensus 331 ~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~-------~~R~~~~v~~----l~g~iYavGG~dg~~~l~svE 399 (571)
T KOG4441|consen 331 LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN-------TKRSDFGVAV----LDGKLYAVGGFDGEKSLNSVE 399 (571)
T ss_pred ECCEEEEEccccCCCcccceEEEecCCCCceeccCCcc-------CccccceeEE----ECCEEEEEeccccccccccEE
Confidence 456799999999 35667777665522211111 1112222222 36788899999975 55
Q ss_pred EEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEE-EEcCCCCEEEEEeCCCc------EEEEecCC
Q 001109 618 LYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNL-KFSNFGARLAVGFECSQ------VAMLDIST 690 (1155)
Q Consensus 618 lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vtsl-afSpdg~~LAsGs~Dg~------V~lWDi~~ 690 (1155)
.||..+.... ..-.... ...+. +..-+|+..|+|+.|+. |..+|..+
T Consensus 400 ~YDp~~~~W~-------------------------~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 400 CYDPVTNKWT-------------------------PVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred EecCCCCccc-------------------------ccCCCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 5666554321 0000111 11111 22346888888887663 56777776
Q ss_pred ccEEEEeccCCCCCCC-eeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCce-----EEEEECCCCceeeee
Q 001109 691 FSVLFITDSLSNSNSP-VLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAH-----IVVCDSTTGHILFSR 764 (1155)
Q Consensus 691 ~~~l~~~~~~~~h~~~-V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~-----I~vwd~~tG~~l~~~ 764 (1155)
.+....... -... =..++. -++.+.+.|+.|+. |..+|..+-+-.-..
T Consensus 454 ~~W~~~~~M---~~~R~~~g~a~-----------------------~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 454 NTWTLIAPM---NTRRSGFGVAV-----------------------LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred CceeecCCc---ccccccceEEE-----------------------ECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 554321111 0000 001222 35778888888873 777888775544334
Q ss_pred ecccC
Q 001109 765 SIHHQ 769 (1155)
Q Consensus 765 ~~~~~ 769 (1155)
+|...
T Consensus 508 ~m~~~ 512 (571)
T KOG4441|consen 508 PMTSP 512 (571)
T ss_pred cCccc
Confidence 34433
No 458
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.06 E-value=48 Score=39.70 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=56.6
Q ss_pred CceEEEEcCCCCEEEEEEcCCeEEE-----EccCC--------ceE--------EEEcCCCCCEEEEEEEcCC---cEEE
Q 001109 44 TASILAFDHVQSLLAIGTQDGRIKV-----IGGDN--------IEG--------LLVSPKQLAFKHLEFLQNQ---GFLV 99 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs~DG~I~v-----w~~~~--------~~~--------~~~~~~~~~V~~l~Fs~dg---~~Lv 99 (1155)
.|+.+..+|.|..+|-.+.+|-+.. |+.++ ..| +++....-.++.++|.|+. ..|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4777888999999999999986544 65432 111 2222223467788999975 5788
Q ss_pred EEecCCeEEEEECCCCceeeeecC
Q 001109 100 SISSGNEIQLWDLEARRITSTLPW 123 (1155)
Q Consensus 100 S~s~Dg~I~vWDl~t~~~~~~l~~ 123 (1155)
.-+.|++|+|+|+..-+-++..++
T Consensus 185 iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred EEecCcEEEEEecCCcchhhccCC
Confidence 888999999999988776654443
No 459
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=52.96 E-value=2.9e+02 Score=33.79 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=29.0
Q ss_pred EEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCCCce----eEEEEecCCCEEEEEe
Q 001109 89 LEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESNI----TAFSVIFGTSYMYIGD 143 (1155)
Q Consensus 89 l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~V----tsva~spd~~~l~~G~ 143 (1155)
+.+.++|.+|+... +.+...|+. |+.+......... ..+...|+|++|+.+.
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~ 208 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILAS 208 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEe
Confidence 66788876665444 888899985 5555544443322 4577889999998887
No 460
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=52.39 E-value=39 Score=36.22 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=38.4
Q ss_pred cEEEEEecCCeEEEEECCC--CceeeeecCCCceeEEEEecCCCEEEEEe
Q 001109 96 GFLVSISSGNEIQLWDLEA--RRITSTLPWESNITAFSVIFGTSYMYIGD 143 (1155)
Q Consensus 96 ~~LvS~s~Dg~I~vWDl~t--~~~~~~l~~~~~Vtsva~spd~~~l~~G~ 143 (1155)
..|+.+...+.|.+|++.+ .+...++..-+.|..++.+..|+|+++=-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEE
Confidence 5565557788999999983 35677777779999999999999998743
No 461
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.38 E-value=44 Score=43.59 Aligned_cols=69 Identities=9% Similarity=0.071 Sum_probs=47.9
Q ss_pred EEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccE
Q 001109 228 RLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISS 307 (1155)
Q Consensus 228 v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~s 307 (1155)
+.|+|.-. ...++...|+.|++.-+......... + .-...++|
T Consensus 161 ~~wnP~vp-------~n~av~l~dlsl~V~~~~~~~~~v~s-------------~-----------------p~t~~~Ta 203 (1405)
T KOG3630|consen 161 NVWNPLVP-------LNSAVDLSDLSLRVKSTKQLAQNVTS-------------F-----------------PVTNSQTA 203 (1405)
T ss_pred ccccCCcc-------chhhhhccccchhhhhhhhhhhhhcc-------------c-----------------Ccccceee
Confidence 67777644 34677788888887655432221110 0 02456899
Q ss_pred EEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 308 LCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 308 l~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
+||+ |.|+.++.|-..|++.-+...-
T Consensus 204 v~WS-prGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 204 VLWS-PRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred EEec-cccceeeEecCCCeEEEeeccc
Confidence 9999 9999999999999998886543
No 462
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.13 E-value=3e+02 Score=34.86 Aligned_cols=74 Identities=14% Similarity=0.059 Sum_probs=43.1
Q ss_pred CCceeEEEEEeecCcEEEeecCCcccccccccccccccccccCc----ceeeeecCCCcEEEEcCCCCCCCCccchhhhh
Q 001109 883 NEKECGLVVLYQTGDIEIRVLPYLEVGGQTSLMSLLRWNYKTNM----EETLCSSDSGEIVLVDFSSIPVSYPHLHDKVL 958 (1155)
Q Consensus 883 ~~~~~~l~~~~~~G~ieirslp~l~~~~~~s~~~~~~~~~~~~~----~~~~~~s~~g~~~lvng~~~~~~~~~~~~~~~ 958 (1155)
|++.--|+|...+|.|-+=|.--=+.+-|-.+-. +.--.+| ..++.++..-.+.||+.. +|+.+-.||...
T Consensus 225 S~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~---~~~p~qm~WcgndaVvl~~e~~l~lvgp~--gd~V~f~yd~t~ 299 (829)
T KOG2280|consen 225 SPNRRFLALYTETGKIWVVSIDLSQILCEFNCTD---HDPPKQMAWCGNDAVVLSWEVNLMLVGPP--GDSVQFYYDETA 299 (829)
T ss_pred cCCcceEEEEecCCcEEEEecchhhhhhccCCCC---CCchHhceeecCCceEEEEeeeEEEEcCC--CCccccccCCCc
Confidence 4677778888899999887754333332221100 1111122 237777777777778765 667777776655
Q ss_pred hhh
Q 001109 959 EAA 961 (1155)
Q Consensus 959 ~~~ 961 (1155)
...
T Consensus 300 ~l~ 302 (829)
T KOG2280|consen 300 ILS 302 (829)
T ss_pred eee
Confidence 433
No 463
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=49.25 E-value=1.5e+02 Score=33.57 Aligned_cols=92 Identities=17% Similarity=0.276 Sum_probs=59.3
Q ss_pred eEEEEccCCceEEEEcC-CCCCEEEEEEEcCCcEEEEEe------cCCeEEEEECCCCceeeeecC------CCceeEEE
Q 001109 65 RIKVIGGDNIEGLLVSP-KQLAFKHLEFLQNQGFLVSIS------SGNEIQLWDLEARRITSTLPW------ESNITAFS 131 (1155)
Q Consensus 65 ~I~vw~~~~~~~~~~~~-~~~~V~~l~Fs~dg~~LvS~s------~Dg~I~vWDl~t~~~~~~l~~------~~~Vtsva 131 (1155)
.|.+||..+.+...... -.+.|..+.|..+...+++|. ....+..||+.+..-. .+.. +++|+++.
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTALT 95 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEEE
Confidence 58889877665543322 256899999986655555554 2446889999877532 2222 37888888
Q ss_pred Eec-CC-CEEEEEe-CCCcEEEEEecCCC
Q 001109 132 VIF-GT-SYMYIGD-EYGMVYVLKYDTEE 157 (1155)
Q Consensus 132 ~sp-d~-~~l~~G~-~dG~V~vw~~d~~~ 157 (1155)
+.. |+ ++.+.|. .+|..++..||...
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcCCc
Confidence 853 33 3444444 67777888888755
No 464
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=47.92 E-value=2.7e+02 Score=33.26 Aligned_cols=40 Identities=20% Similarity=0.024 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEecCCc---cEEEEe
Q 001109 658 LNSPICNLKFSNFGARLAVGF-ECSQVAMLDISTF---SVLFIT 697 (1155)
Q Consensus 658 h~~~VtslafSpdg~~LAsGs-~Dg~V~lWDi~~~---~~l~~~ 697 (1155)
-++-|+.|.+|.|.++|-+.. .+|.|+-||+.++ +++.+.
T Consensus 310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv 353 (461)
T PF05694_consen 310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQV 353 (461)
T ss_dssp E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEE
T ss_pred CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEE
Confidence 356689999999999887655 5899999999874 444443
No 465
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=47.21 E-value=17 Score=28.50 Aligned_cols=38 Identities=26% Similarity=0.232 Sum_probs=30.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001109 1110 DKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRM 1147 (1155)
Q Consensus 1110 ~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~ 1147 (1155)
+|+++|-.||=.|-+.+..=...|+.+..+|.+|+.++
T Consensus 1 ekil~kI~kLLalA~~~~~~~~EA~~A~~kAq~Lm~ky 38 (43)
T PF10979_consen 1 EKILEKIRKLLALAESTGSNEHEAEAALAKAQRLMAKY 38 (43)
T ss_pred ChHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 47888888887776655555668999999999999885
No 466
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=46.62 E-value=57 Score=24.32 Aligned_cols=24 Identities=8% Similarity=-0.175 Sum_probs=16.6
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCC
Q 001109 657 VLNSPICNLKFSNFGARLAVGFEC 680 (1155)
Q Consensus 657 ~h~~~VtslafSpdg~~LAsGs~D 680 (1155)
...+.-.+.+|||||++|+-.+.-
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEEC
T ss_pred cCCccccCEEEecCCCEEEEEecC
Confidence 345567889999999998865543
No 467
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=45.88 E-value=3.7e+02 Score=32.62 Aligned_cols=55 Identities=7% Similarity=0.024 Sum_probs=35.1
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCC
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVT 604 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg 604 (1155)
+|.|++++|+|--..|.|++++-..+....+..+. .+....-......|+|+|+-
T Consensus 36 aflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~----~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 36 LWGPDNQLWVTERATGKILRVNPETGEVKVVFTLP----EIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCC----ceeccCCCCceeeEEECCCc
Confidence 78899999998876799999986554322222221 11111113468999999985
No 468
>PHA02790 Kelch-like protein; Provisional
Probab=44.80 E-value=4.3e+02 Score=32.32 Aligned_cols=64 Identities=11% Similarity=-0.039 Sum_probs=33.7
Q ss_pred CcCcEEEEEECCC-----cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCC--eEEEEEe
Q 001109 549 LVERLYIAGYRDG-----STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSG--LVWLYNL 621 (1155)
Q Consensus 549 ~~~~lLaTgs~Dg-----tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG--~V~lwd~ 621 (1155)
.++.+++.|+.++ ++..||........+..+. ..+.....+ .-++...|+|+.++ .|..|+.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~---------~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp 338 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMN---------SPRLYASGV--PANNKLYVVGGLPNPTSVERWFH 338 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCC---------chhhcceEE--EECCEEEEECCcCCCCceEEEEC
Confidence 3456888888654 4666776655422111111 011111122 34678888888653 4666765
Q ss_pred cc
Q 001109 622 IK 623 (1155)
Q Consensus 622 ~~ 623 (1155)
..
T Consensus 339 ~~ 340 (480)
T PHA02790 339 GD 340 (480)
T ss_pred CC
Confidence 44
No 469
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=44.42 E-value=94 Score=32.21 Aligned_cols=30 Identities=10% Similarity=0.199 Sum_probs=21.1
Q ss_pred CEEEEEEEcCC------cEEEEEecCCeEEEEECCC
Q 001109 85 AFKHLEFLQNQ------GFLVSISSGNEIQLWDLEA 114 (1155)
Q Consensus 85 ~V~~l~Fs~dg------~~LvS~s~Dg~I~vWDl~t 114 (1155)
.|..++|||.| -.|++.+.++.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 67788888843 2566677788888887543
No 470
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=42.53 E-value=4e+02 Score=35.69 Aligned_cols=100 Identities=19% Similarity=0.261 Sum_probs=58.6
Q ss_pred CEEEEEEc---------CCeEEEEccCC-----c--------eEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEEC
Q 001109 55 SLLAIGTQ---------DGRIKVIGGDN-----I--------EGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDL 112 (1155)
Q Consensus 55 ~lLAsgs~---------DG~I~vw~~~~-----~--------~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl 112 (1155)
.+||+|+. -|+|.||+.-. + ..++.-.-+++|..++=. + ++|+++ ....|.||++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~-G~l~~~-~GqKI~v~~l 1123 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-R-GHLLSS-QGQKIIVRKL 1123 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-c-cEEEEc-cCcEEEEEEe
Confidence 48999984 38999997411 1 112222236778776544 2 566665 4678999999
Q ss_pred C-CCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCC
Q 001109 113 E-ARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEE 157 (1155)
Q Consensus 113 ~-t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~ 157 (1155)
+ ...++..-...-++.-....-=.++++.|+--..|+++.|+.+.
T Consensus 1124 ~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep 1169 (1366)
T KOG1896|consen 1124 DRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEP 1169 (1366)
T ss_pred ccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCc
Confidence 4 44444322122222222222236678888877888888887754
No 471
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=42.44 E-value=1.2e+02 Score=27.70 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001109 1100 GTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADL 1139 (1155)
Q Consensus 1100 ~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~ 1139 (1155)
+--+-+.++.+++-+=.+|-+.|.+.|+.++..|...++.
T Consensus 21 ~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~ 60 (89)
T PF00957_consen 21 ENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRK 60 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555555544443
No 472
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=41.09 E-value=6.7e+02 Score=29.63 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=61.4
Q ss_pred EEEEEcC----CeEEEEccC--CceEEEEcC-------CCCCEEEEEEE--c-CCc-EEEEEecCCeEEEEECC---CC-
Q 001109 57 LAIGTQD----GRIKVIGGD--NIEGLLVSP-------KQLAFKHLEFL--Q-NQG-FLVSISSGNEIQLWDLE---AR- 115 (1155)
Q Consensus 57 LAsgs~D----G~I~vw~~~--~~~~~~~~~-------~~~~V~~l~Fs--~-dg~-~LvS~s~Dg~I~vWDl~---t~- 115 (1155)
||+++.- .+|++|-.+ +........ ....+..+++- + +|. +.+....+|.+..|-|. .+
T Consensus 116 lavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~ 195 (381)
T PF02333_consen 116 LAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK 195 (381)
T ss_dssp EEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS
T ss_pred EEEEecCcCCCCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc
Confidence 5555532 469998654 333322211 11235677764 3 233 55566788988888774 33
Q ss_pred ---ceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCC
Q 001109 116 ---RITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTE 156 (1155)
Q Consensus 116 ---~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~ 156 (1155)
+++++|...+.+..|+++....+||+|-++-= ||.|+.+
T Consensus 196 v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~G--IW~y~Ae 237 (381)
T PF02333_consen 196 VSATLVREFKVGSQPEGCVVDDETGRLYVGEEDVG--IWRYDAE 237 (381)
T ss_dssp EEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTTE--EEEEESS
T ss_pred EeeEEEEEecCCCcceEEEEecccCCEEEecCccE--EEEEecC
Confidence 35777888889999999999999999999864 5888765
No 473
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=40.95 E-value=55 Score=22.86 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCEEEEEEcCCeEEEE
Q 001109 45 ASILAFDHVQSLLAIGTQDGRIKVI 69 (1155)
Q Consensus 45 vs~lafsp~g~lLAsgs~DG~I~vw 69 (1155)
...+|++++|+++++=+.+.+|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 5678899999888888888888775
No 474
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=40.30 E-value=1.6e+02 Score=30.56 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=45.3
Q ss_pred CCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001109 1084 RTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKR 1146 (1155)
Q Consensus 1084 ~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~ 1146 (1155)
.....+..+ |++++.-|.+-|+++-.+-++||.+..++-.|.+.|..+.+.=......
T Consensus 109 ~tf~rL~~~-----Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~ 166 (171)
T PF04799_consen 109 STFARLCQQ-----VDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQ 166 (171)
T ss_dssp -HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777 8899999999999999999999999888888887777766655444444
No 475
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=39.75 E-value=4.4e+02 Score=29.13 Aligned_cols=149 Identities=11% Similarity=0.000 Sum_probs=0.0
Q ss_pred EEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCC---CeEEEEEeccCccccceeeeccCCceEE
Q 001109 565 IWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSS---GLVWLYNLIKSSNEETLNLVTETGKEVH 641 (1155)
Q Consensus 565 lWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~d---G~V~lwd~~~~~~~~~~~~v~~~~~~~~ 641 (1155)
+||..+.+.+++.. ..+.-+.+=+|-|||++|.+|+.. ..+|+|+....
T Consensus 50 ~yD~~tn~~rpl~v-----------~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~----------------- 101 (243)
T PF07250_consen 50 EYDPNTNTFRPLTV-----------QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTS----------------- 101 (243)
T ss_pred EEecCCCcEEeccC-----------CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCC-----------------
Q ss_pred EecCCCCCceeEEee--cCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEec-CCccEEEEeccCCC----CCCCeeEEEEe
Q 001109 642 ILPGGDGPQCKALFS--VLNSPICNLKFSNFGARLAVGFECS-QVAMLDI-STFSVLFITDSLSN----SNSPVLYLAVK 713 (1155)
Q Consensus 642 ~~~~~~g~~~~~~l~--~h~~~VtslafSpdg~~LAsGs~Dg-~V~lWDi-~~~~~l~~~~~~~~----h~~~V~slafs 713 (1155)
.....|...-. ....+=-++..-|||+.|++|+.+. +..+|.- ....-......+.. ....-.=..|-
T Consensus 102 ----~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~l 177 (243)
T PF07250_consen 102 ----DGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHL 177 (243)
T ss_pred ----CCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEE
Q ss_pred ecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeeccc
Q 001109 714 SLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSIHH 768 (1155)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~~ 768 (1155)
.|||++++.+..++ .|+|..+.+++..+|--|
T Consensus 178 ---------------------lPdG~lFi~an~~s--~i~d~~~n~v~~~lP~lP 209 (243)
T PF07250_consen 178 ---------------------LPDGNLFIFANRGS--IIYDYKTNTVVRTLPDLP 209 (243)
T ss_pred ---------------------cCCCCEEEEEcCCc--EEEeCCCCeEEeeCCCCC
No 476
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.21 E-value=5.3e+02 Score=32.84 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=35.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEecc
Q 001109 658 LNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDS 699 (1155)
Q Consensus 658 h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~ 699 (1155)
..+.+.-+.+||++++||-=...|.|.+.+++..+++...++
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 346788899999999999999999999999887777665543
No 477
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=36.87 E-value=5.2e+02 Score=32.46 Aligned_cols=160 Identities=13% Similarity=-0.013 Sum_probs=83.9
Q ss_pred CcCcEEEEEECCC------cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCC-C-----eE
Q 001109 549 LVERLYIAGYRDG------STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSS-G-----LV 616 (1155)
Q Consensus 549 ~~~~lLaTgs~Dg------tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~d-G-----~V 616 (1155)
..+.+++.|+.++ +|+.+|...+.-..+..+. +...-.++++- ++...|+|+.| | +|
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~----------~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~v 351 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP----------SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSV 351 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC----------cccccccEEEE-CCEEEEEccccCCCcccceE
Confidence 3456888888874 6778887776432222221 11123344443 45778899988 3 45
Q ss_pred EEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCc-----EEEEecCCc
Q 001109 617 WLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQ-----VAMLDISTF 691 (1155)
Q Consensus 617 ~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~-----V~lWDi~~~ 691 (1155)
..||...+.. ...-.........=...-+|..-|+|+.||. |-.||..+.
T Consensus 352 e~YD~~~~~W-------------------------~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~ 406 (571)
T KOG4441|consen 352 ERYDPRTNQW-------------------------TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN 406 (571)
T ss_pred EEecCCCCce-------------------------eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCC
Confidence 6666655421 1100000111111111236888899999974 667777765
Q ss_pred cEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCc------eEEEEECCCCceeeeee
Q 001109 692 SVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDA------HIVVCDSTTGHILFSRS 765 (1155)
Q Consensus 692 ~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg------~I~vwd~~tG~~l~~~~ 765 (1155)
..-... .+..+....+.-. .+|++-++|+.|+ ++..+|..|++-....+
T Consensus 407 ~W~~va----~m~~~r~~~gv~~---------------------~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~ 461 (571)
T KOG4441|consen 407 KWTPVA----PMLTRRSGHGVAV---------------------LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAP 461 (571)
T ss_pred cccccC----CCCcceeeeEEEE---------------------ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCC
Confidence 432211 1111222222221 3578888888554 45778888877555555
Q ss_pred cccC
Q 001109 766 IHHQ 769 (1155)
Q Consensus 766 ~~~~ 769 (1155)
|...
T Consensus 462 M~~~ 465 (571)
T KOG4441|consen 462 MNTR 465 (571)
T ss_pred cccc
Confidence 5433
No 478
>PRK13615 lipoprotein LpqB; Provisional
Probab=36.28 E-value=2.7e+02 Score=34.74 Aligned_cols=94 Identities=12% Similarity=0.106 Sum_probs=57.7
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCC-Cceee-eecC
Q 001109 46 SILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA-RRITS-TLPW 123 (1155)
Q Consensus 46 s~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t-~~~~~-~l~~ 123 (1155)
.++|.+++|+.+|.-..++.+.++...+...... .......-.|.++| ++=++..++..++..... |.... ...+
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~~~~~~--~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~~ 413 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRDAVLLD--TRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVSW 413 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCcceeec--cCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeeccc
Confidence 6789999999998887788777775543222211 12234555677775 555655444455554432 33311 1222
Q ss_pred --CCceeEEEEecCCCEEEEE
Q 001109 124 --ESNITAFSVIFGTSYMYIG 142 (1155)
Q Consensus 124 --~~~Vtsva~spd~~~l~~G 142 (1155)
...|+.+.+++||-.++.-
T Consensus 414 ~~~~~I~~lrvSrDG~R~Avi 434 (557)
T PRK13615 414 TATGRVVSLEVARDGARVLVQ 434 (557)
T ss_pred cCCCeeEEEEeCCCccEEEEE
Confidence 2589999999999977653
No 479
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.94 E-value=1.5e+02 Score=35.14 Aligned_cols=102 Identities=9% Similarity=0.050 Sum_probs=65.9
Q ss_pred CCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEE--cCC---CCCEEEEEEEcCCcEEEEEecCCeEEEEECCCC
Q 001109 41 IPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLV--SPK---QLAFKHLEFLQNQGFLVSISSGNEIQLWDLEAR 115 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~--~~~---~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~ 115 (1155)
-.|.|.++.||+|.+.||+--.|.+|.+++..+.+.... ..+ ...|....|+.+ .-++-.+..| +.++-....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 446899999999999999999999999987644332222 111 335777788876 4555555333 666665432
Q ss_pred -ceeeeecCC-CceeEEEEecCCCEEEEEeC
Q 001109 116 -RITSTLPWE-SNITAFSVIFGTSYMYIGDE 144 (1155)
Q Consensus 116 -~~~~~l~~~-~~Vtsva~spd~~~l~~G~~ 144 (1155)
+.++..+.+ -.|+-..+.++.+.++.++.
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 222222333 56778888888886655543
No 480
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=35.90 E-value=3.6e+02 Score=35.51 Aligned_cols=112 Identities=19% Similarity=0.265 Sum_probs=71.8
Q ss_pred ceEEEEcCCCC--EEEEEEc-----------CCeEEEEcc----CCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeE
Q 001109 45 ASILAFDHVQS--LLAIGTQ-----------DGRIKVIGG----DNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEI 107 (1155)
Q Consensus 45 vs~lafsp~g~--lLAsgs~-----------DG~I~vw~~----~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I 107 (1155)
+.+++|+..+. ++++|.. +|.++.|.. +..+.+...+-.++| .+..|.+++++++ ..+.+
T Consensus 880 v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~f~~~~Lag-vG~~l 956 (1205)
T KOG1898|consen 880 VCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEIPGPV--GAICPFQGRVLAG-VGRFL 956 (1205)
T ss_pred eeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCCCccc--eEEeccCCEEEEe-cccEE
Confidence 55666766543 5666653 355666643 222333333223444 4556666666554 57899
Q ss_pred EEEECCCCceeeeecC---CCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceee
Q 001109 108 QLWDLEARRITSTLPW---ESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLI 161 (1155)
Q Consensus 108 ~vWDl~t~~~~~~l~~---~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~ 161 (1155)
+++|+-.+++++..+. +..|+.+.. .+..+++|+..-.|+++.|+.++.++.
T Consensus 957 ~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~ 1011 (1205)
T KOG1898|consen 957 RLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLI 1011 (1205)
T ss_pred EEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEE
Confidence 9999998887765443 344555544 678899999999999999998877664
No 481
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=35.77 E-value=2e+02 Score=31.93 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=48.7
Q ss_pred CCCCeEEEEEcC------CC-CEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCC
Q 001109 658 LNSPICNLKFSN------FG-ARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDI 730 (1155)
Q Consensus 658 h~~~VtslafSp------dg-~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~ 730 (1155)
+...||||+--. ++ ..|+.|+++|.|.|.|-+.-.++.+..+ .+-||.=.+.. .+
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~l---psvPv~i~~~G---~~------------ 236 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQL---PSVPVFISVSG---QY------------ 236 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEec---CCCceEEEEEe---ee------------
Confidence 345677765422 12 3699999999999999999888887765 34454222222 11
Q ss_pred CCCCCCCCcEEEEEeCCceEEEE
Q 001109 731 NSSNDTKKETLFFMTKDAHIVVC 753 (1155)
Q Consensus 731 ~~~~~pd~~~L~s~s~Dg~I~vw 753 (1155)
+--+-+|++++.||.|.+.
T Consensus 237 ----devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 237 ----DEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ----eccceEEEEEeCCCEEEEE
Confidence 1024468889999999875
No 482
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=35.01 E-value=2.3e+02 Score=32.35 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=40.7
Q ss_pred CCeEEEEccCCc--eEEEEcCCCCCEEEEEEEcCCcEEEEE-ec---C----------------CeEEEEECCCCceeee
Q 001109 63 DGRIKVIGGDNI--EGLLVSPKQLAFKHLEFLQNQGFLVSI-SS---G----------------NEIQLWDLEARRITST 120 (1155)
Q Consensus 63 DG~I~vw~~~~~--~~~~~~~~~~~V~~l~Fs~dg~~LvS~-s~---D----------------g~I~vWDl~t~~~~~~ 120 (1155)
.|.|..+|.+++ +.+... .+..+.|.|. |.+++.+ |. + .-|.|-|+.+|..++.
T Consensus 222 tGev~~vD~~~G~~e~Va~v--pG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~ 297 (335)
T TIGR03032 222 RGELGYVDPQAGKFQPVAFL--PGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHW 297 (335)
T ss_pred CCEEEEEcCCCCcEEEEEEC--CCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEE
Confidence 345555554322 333333 3356777787 5666544 21 1 1256778999998888
Q ss_pred ecCCC---ceeEEEEecCC
Q 001109 121 LPWES---NITAFSVIFGT 136 (1155)
Q Consensus 121 l~~~~---~Vtsva~spd~ 136 (1155)
++.++ ++.++++.|+-
T Consensus 298 l~feg~v~EifdV~vLPg~ 316 (335)
T TIGR03032 298 LRFEGVIEEIYDVAVLPGV 316 (335)
T ss_pred EEeCCceeEEEEEEEecCC
Confidence 87764 45666776653
No 483
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=34.46 E-value=3.8e+02 Score=34.90 Aligned_cols=70 Identities=7% Similarity=0.088 Sum_probs=49.1
Q ss_pred CCEEEEEEcCCeEEEEccCCceEEEEcCCCCC---------EEEEEEEc----------------CCcEEEEEecCCeEE
Q 001109 54 QSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLA---------FKHLEFLQ----------------NQGFLVSISSGNEIQ 108 (1155)
Q Consensus 54 g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~---------V~~l~Fs~----------------dg~~LvS~s~Dg~I~ 108 (1155)
+..|.+++.++.|.-+|..+++.+..+..... ++.+.+-. .+++++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 56777788888888888888777766533221 23344422 234788888899999
Q ss_pred EEECCCCceeeeecC
Q 001109 109 LWDLEARRITSTLPW 123 (1155)
Q Consensus 109 vWDl~t~~~~~~l~~ 123 (1155)
-.|.++|+.+..+..
T Consensus 274 ALDA~TGk~~W~fg~ 288 (764)
T TIGR03074 274 ALDADTGKLCEDFGN 288 (764)
T ss_pred EEECCCCCEEEEecC
Confidence 999999998876543
No 484
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.36 E-value=5.1e+02 Score=27.93 Aligned_cols=76 Identities=16% Similarity=0.149 Sum_probs=47.9
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeE---EEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEE
Q 001109 668 SNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLY---LAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFM 744 (1155)
Q Consensus 668 Spdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~s---lafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~ 744 (1155)
..|++.|..++-..++..-|..+-..+.+.++ .-...||.. |.| -||.+.+-.
T Consensus 137 t~d~~~LimsdGsatL~frdP~tfa~~~~v~V-T~~g~pv~~LNELE~-----------------------VdG~lyANV 192 (262)
T COG3823 137 TSDDKNLIMSDGSATLQFRDPKTFAELDTVQV-TDDGVPVSKLNELEW-----------------------VDGELYANV 192 (262)
T ss_pred ecCCcceEeeCCceEEEecCHHHhhhcceEEE-EECCeecccccceee-----------------------eccEEEEee
Confidence 34666677777677777777766544433332 112233333 333 367777777
Q ss_pred eCCceEEEEECCCCceeeeeecc
Q 001109 745 TKDAHIVVCDSTTGHILFSRSIH 767 (1155)
Q Consensus 745 s~Dg~I~vwd~~tG~~l~~~~~~ 767 (1155)
=.+-.|..+|+++|+.+....+.
T Consensus 193 w~t~~I~rI~p~sGrV~~widlS 215 (262)
T COG3823 193 WQTTRIARIDPDSGRVVAWIDLS 215 (262)
T ss_pred eeecceEEEcCCCCcEEEEEEcc
Confidence 77778999999999998877433
No 485
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=33.17 E-value=1.2e+03 Score=30.34 Aligned_cols=216 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred EcC-CCCEEEEEEcC--CeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeee-cCCC
Q 001109 50 FDH-VQSLLAIGTQD--GRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTL-PWES 125 (1155)
Q Consensus 50 fsp-~g~lLAsgs~D--G~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l-~~~~ 125 (1155)
||| .+.+||+|.-- ...+--.....-..+..+..+.+..|+-......-..-..+..+++--+.......-- ....
T Consensus 1 ~DP~~~~Lla~g~i~~~~~~r~~~~~~~i~A~asGesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~~~ 80 (765)
T PF10214_consen 1 YDPTVGSLLAIGEIQDVSDLRSGSRPVPILAFASGESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWSIDDGS 80 (765)
T ss_pred CCCCcCccEEEEEeeecccCCCCCceeEEEEEecCCCCCeeEEEEecccccccccccccccccCCCCccccceeEcCCCC
Q ss_pred ceeEEEEe-------cCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccccc
Q 001109 126 NITAFSVI-------FGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNA 198 (1155)
Q Consensus 126 ~Vtsva~s-------pd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~ 198 (1155)
+|..+.|. +..++|++-+...+ +|+.-..... ...+.-+...+...+.+.|.++-.+
T Consensus 81 PI~qI~fa~~~~~~~~~~~~l~Vrt~~st-~I~~p~~~~~---~~~~~~~~s~i~~~~l~~i~~~~tg------------ 144 (765)
T PF10214_consen 81 PIKQIKFATLSESFDEKSRWLAVRTETST-TILRPEYHRV---ISSIRSRPSRIDPNPLLTISSSDTG------------ 144 (765)
T ss_pred CeeEEEecccccccCCcCcEEEEEcCCEE-EEEEcccccc---cccccCCccccccceeEEechhhcC------------
Q ss_pred ceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEc------cCCeEEEEecccc
Q 001109 199 SLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDV------SEDKVVLVRGSKD 272 (1155)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~------~~~~~~~~~~~~~ 272 (1155)
..+... ++|+|... .++|+....|...+||+ ........+....
T Consensus 145 ------------------g~~~aD-----v~FnP~~~-------~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~g 194 (765)
T PF10214_consen 145 ------------------GFPHAD-----VAFNPWDQ-------RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISG 194 (765)
T ss_pred ------------------CCccce-----EEeccCcc-------ceEEEEeccCcEEEEEeccccccCCcceeeccCCCc
Q ss_pred cc-cccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 273 LQ-LKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 273 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
.- ...+ +...-..++|. ++-..|++.... .+.+.|+.+.
T Consensus 195 si~~d~~----------------------e~s~w~rI~W~-~~~~~lLv~~r~-~l~~~d~~~~ 234 (765)
T PF10214_consen 195 SIIFDPE----------------------ELSNWKRILWV-SDSNRLLVCNRS-KLMLIDFESN 234 (765)
T ss_pred cccCCCc----------------------ccCcceeeEec-CCCCEEEEEcCC-ceEEEECCCC
No 486
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=32.70 E-value=70 Score=39.65 Aligned_cols=66 Identities=9% Similarity=0.082 Sum_probs=48.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEecCCccE--EEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCC
Q 001109 661 PICNLKFSNFGARLAVGFECSQVAMLDISTFSV--LFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKK 738 (1155)
Q Consensus 661 ~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~--l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~ 738 (1155)
-+++|.-.|.|+.++.|..||.|++++....+. +.. ..-|-..|.|...
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~------~~~p~~nlv~tnh----------------------- 66 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE------EAKPKENLVFTNH----------------------- 66 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh------hcCCccceeeecc-----------------------
Confidence 467888889999999999999999999765332 221 2334556667632
Q ss_pred cEEEEEeCCceEEEEECC
Q 001109 739 ETLFFMTKDAHIVVCDST 756 (1155)
Q Consensus 739 ~~L~s~s~Dg~I~vwd~~ 756 (1155)
=|++++.|..+..|-.+
T Consensus 67 -gl~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 67 -GLVTATSDRRALAWKED 83 (1636)
T ss_pred -ceEEEeccchhheeecc
Confidence 28899999999999743
No 487
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=32.47 E-value=6.5e+02 Score=28.93 Aligned_cols=123 Identities=15% Similarity=0.089 Sum_probs=64.5
Q ss_pred CeEEEEEecCCCeEEEEeCCCe------EEEEEeccCcc-ccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEE
Q 001109 594 SVSALEFCSVTLNLAIGSSSGL------VWLYNLIKSSN-EETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLK 666 (1155)
Q Consensus 594 ~V~~lafspdg~~Lasgs~dG~------V~lwd~~~~~~-~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vtsla 666 (1155)
.+..|++.|++..+++-+++|. +..+++..... .....+ .....+...+|. .+..-.-..-+|+
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~L~~~~G~----~~~~~~~D~Egi~ 91 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTI-----LDMIPLRDPDGQ----PFPKNGLDPEGIA 91 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEe-----ccceeccCCCCC----cCCcCCCChhHeE
Confidence 6789999965555666667777 55555544111 000000 001111111111 0111111455788
Q ss_pred EcCCCCEEEEEeCC------CcEEEEecCCccEEEEeccC------------CCCCCCeeEEEEeecCCCCccccCCCCC
Q 001109 667 FSNFGARLAVGFEC------SQVAMLDISTFSVLFITDSL------------SNSNSPVLYLAVKSLSDTSNLTISPKDS 728 (1155)
Q Consensus 667 fSpdg~~LAsGs~D------g~V~lWDi~~~~~l~~~~~~------------~~h~~~V~slafs~~~~~~~~~~~~~~~ 728 (1155)
+.++|.++++-=.+ -.|.-+|.. ++.+....+- .....+.-+|+++
T Consensus 92 ~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~--------------- 155 (326)
T PF13449_consen 92 VPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVS--------------- 155 (326)
T ss_pred EecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEEC---------------
Confidence 87888777665555 678778866 4443332111 1134567777777
Q ss_pred CCCCCCCCCCcEEEEEeCCc
Q 001109 729 DINSSNDTKKETLFFMTKDA 748 (1155)
Q Consensus 729 ~~~~~~~pd~~~L~s~s~Dg 748 (1155)
|||+.|+++.+..
T Consensus 156 -------~dG~~l~~~~E~~ 168 (326)
T PF13449_consen 156 -------PDGRTLFAAMESP 168 (326)
T ss_pred -------CCCCEEEEEECcc
Confidence 8888788776654
No 488
>PRK13615 lipoprotein LpqB; Provisional
Probab=31.86 E-value=1.1e+03 Score=29.44 Aligned_cols=130 Identities=15% Similarity=0.007 Sum_probs=67.2
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
+.+++++.+|.-..++.+++|...... ..+ +. + ..++.=.|+++| .+-+.......++.......
T Consensus 340 avS~dg~~~A~v~~~~~l~vg~~~~~~-~~~--~~---------~--~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G 404 (557)
T PRK13615 340 TLSADGRQAAVRNASGVWSVGDGDRDA-VLL--DT---------R--PGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDG 404 (557)
T ss_pred eEcCCCceEEEEcCCceEEEecCCCcc-eee--cc---------C--CccccCcCcCCC-CEEEEeCCCceEEEEecCCC
Confidence 677888888877778878887655222 111 11 1 134555677766 44444333334444432210
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEec--CCc--cEE-EE-
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFE---CSQVAMLDI--STF--SVL-FI- 696 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~---Dg~V~lWDi--~~~--~~l-~~- 696 (1155)
. ...+. .. ..-.+.|+.+..|+||-++|.=.. .+.|.|=-+ ..+ ..+ ..
T Consensus 405 ~-------------~~~v~--------v~-~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p 462 (557)
T PRK13615 405 V-------------GHPVA--------VS-WTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTP 462 (557)
T ss_pred c-------------eEEee--------cc-ccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeecc
Confidence 0 00000 00 012367999999999998776432 345554322 222 233 11
Q ss_pred eccCCCCCCCeeEEEEe
Q 001109 697 TDSLSNSNSPVLYLAVK 713 (1155)
Q Consensus 697 ~~~~~~h~~~V~slafs 713 (1155)
..+..+.. .+.+++|.
T Consensus 463 ~~l~~~l~-~v~sl~W~ 478 (557)
T PRK13615 463 LELLASPG-TPLDATWV 478 (557)
T ss_pred EEcccCcC-cceeeEEc
Confidence 11222334 88999997
No 489
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.15 E-value=6.9e+02 Score=33.93 Aligned_cols=25 Identities=12% Similarity=0.332 Sum_probs=20.6
Q ss_pred CCCCCCcEEEEEeCCceEEEEECCC
Q 001109 733 SNDTKKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 733 ~~~pd~~~L~s~s~Dg~I~vwd~~t 757 (1155)
..|....+|.+-++-|+|.+||...
T Consensus 249 ~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 249 TIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EeccccceeeeeccCceEEEEEccC
Confidence 4445678899999999999999765
No 490
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=30.48 E-value=9.2e+02 Score=28.06 Aligned_cols=159 Identities=13% Similarity=0.109 Sum_probs=0.0
Q ss_pred CcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccce
Q 001109 551 ERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETL 630 (1155)
Q Consensus 551 ~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~ 630 (1155)
...+..+..||.|.-.|..++. ........+ ....+..-.+-.+|+ +.+++.+|.+..+|..++...
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~----~~W~~~~~~-----~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~--- 134 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGL----VKWSYPLLG-----AVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLV--- 134 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCc----EEecccCcC-----cceeccCceEEeCCe-EEEecccceEEEEECCCCcEE---
Q ss_pred eeeccCCceEEEecCCCCCceeEEeecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeE
Q 001109 631 NLVTETGKEVHILPGGDGPQCKALFSVLN-SPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLY 709 (1155)
Q Consensus 631 ~~v~~~~~~~~~~~~~~g~~~~~~l~~h~-~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~s 709 (1155)
-.+.... -.+-.-++-.++..++.. .+|.+.-.|..++..++....... ......
T Consensus 135 ----------------------W~~~~~~~~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~ 190 (370)
T COG1520 135 ----------------------WSRNVGGSPYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAP-LSLSIY 190 (370)
T ss_pred ----------------------EEEecCCCeEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCc-cccccc
Q ss_pred EEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeC--CceEEEEECCCCceeeeeeccc
Q 001109 710 LAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTK--DAHIVVCDSTTGHILFSRSIHH 768 (1155)
Q Consensus 710 lafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~--Dg~I~vwd~~tG~~l~~~~~~~ 768 (1155)
-... .....++.++. ++.+...|.++|..++...++.
T Consensus 191 ~~~~----------------------~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~ 229 (370)
T COG1520 191 GSPA----------------------IASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQ 229 (370)
T ss_pred cCce----------------------eecceEEEecCCCcceEEEEEccCCcEeeeeeeec
No 491
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=30.17 E-value=2.6e+02 Score=33.22 Aligned_cols=165 Identities=15% Similarity=0.196 Sum_probs=0.0
Q ss_pred CCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCCCcee--------EEEEecCCCEEEEEeCCCcEEEEEecC
Q 001109 84 LAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESNIT--------AFSVIFGTSYMYIGDEYGMVYVLKYDT 155 (1155)
Q Consensus 84 ~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~Vt--------sva~spd~~~l~~G~~dG~V~vw~~d~ 155 (1155)
..|..+-..|||+.|..-+. +++.|.++..+.+...--.+..-. ++..-..|.-|.++.+||-|.-| +|.
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW-Fdv 298 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW-FDV 298 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee-eee
Q ss_pred CCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccce-eeEEEEeecc
Q 001109 156 EEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFF-VEIRLLQFQK 234 (1155)
Q Consensus 156 ~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-v~~v~~~p~~ 234 (1155)
. ..+...-++-+...+. .+.-..-|+.
T Consensus 299 r----------------------------------------------------~~~~p~l~h~R~f~l~pa~~~~l~pe~ 326 (733)
T COG4590 299 R----------------------------------------------------RDGQPHLNHIRNFKLAPAEVQFLLPET 326 (733)
T ss_pred e----------------------------------------------------cCCCCcceeeeccccCcccceeecccc
Q ss_pred cccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecC
Q 001109 235 HVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASND 314 (1155)
Q Consensus 235 ~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pd 314 (1155)
.. +-+++-+.+|++.++.....+.+..... -..+.-++++ |.
T Consensus 327 ~r------kgF~~l~~~G~L~~f~st~~~~lL~~~~-------------------------------~~~~~~~~~S-p~ 368 (733)
T COG4590 327 NR------KGFYSLYRNGTLQSFYSTSEKLLLFERA-------------------------------YQAPQLVAMS-PN 368 (733)
T ss_pred cc------ceEEEEcCCCceeeeecccCcceehhhh-------------------------------hcCcceeeeC-cc
Q ss_pred CCeEEEEEcCCcEEEEEcCCCCCcccc
Q 001109 315 GSVLAVGYVDGDILLWNLRAAASTKDW 341 (1155)
Q Consensus 315 G~~lasg~~DG~I~lWd~~s~~~~~~~ 341 (1155)
+.++++- ..|.|++..+....+...+
T Consensus 369 ~~~Ll~e-~~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 369 QAYLLSE-DQGKIRLAQLENRNPEISW 394 (733)
T ss_pred cchheee-cCCceEEEEecCCCCCccH
No 492
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=29.54 E-value=93 Score=38.68 Aligned_cols=94 Identities=13% Similarity=0.147 Sum_probs=60.4
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeec
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLP 122 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~ 122 (1155)
..++++.-+|.|+-++.|..||.|++|+.-....-.......|-..|.|...| |+++..|..+.-|. +.|-....+.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvqqqfd 91 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQQQFD 91 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee-ccCcchhhcc
Confidence 34677778899999999999999999875322110011123455677888776 88888888888886 3443333332
Q ss_pred C----CCceeEEEEecCCCEE
Q 001109 123 W----ESNITAFSVIFGTSYM 139 (1155)
Q Consensus 123 ~----~~~Vtsva~spd~~~l 139 (1155)
. +....++...|..+.+
T Consensus 92 yndqsekefss~~cdptaqnv 112 (1636)
T KOG3616|consen 92 YNDQSEKEFSSILCDPTAQNV 112 (1636)
T ss_pred ccchhhhhccceecCchhhhh
Confidence 2 2445666666765544
No 493
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=28.63 E-value=8.4e+02 Score=28.01 Aligned_cols=13 Identities=23% Similarity=0.113 Sum_probs=9.2
Q ss_pred cCCCCEEEEEeCC
Q 001109 668 SNFGARLAVGFEC 680 (1155)
Q Consensus 668 Spdg~~LAsGs~D 680 (1155)
..+++..+.|+.+
T Consensus 255 ~~~~~Iyv~GG~~ 267 (346)
T TIGR03547 255 ISNGVLLVAGGAN 267 (346)
T ss_pred EECCEEEEeecCC
Confidence 3477888888764
No 494
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=28.42 E-value=15 Score=43.45 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=67.3
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceee
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNL 632 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~ 632 (1155)
+++-+...+.+.+||+.+.-.. .++. ...|.... ++|++-+..++.|...|.++||+.......
T Consensus 89 lavlAek~~piylwd~n~eytq---qLE~------gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~i----- 152 (615)
T KOG2247|consen 89 LAVLAEKTGPIYLWDVNSEYTQ---QLES------GGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRI----- 152 (615)
T ss_pred hhhhhhcCCCeeechhhhhhHH---HHhc------cCcchHHH--HhhccCCccccccccccceEEEeccchhhh-----
Confidence 3455667889999999765311 1111 01232333 789999999999999999999998764321
Q ss_pred eccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 001109 633 VTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDIST 690 (1155)
Q Consensus 633 v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~ 690 (1155)
.+...|...++++++.+.+ +.+.++.|.++.+-...+
T Consensus 153 --------------------iv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~~qeg 189 (615)
T KOG2247|consen 153 --------------------IVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVTTQEG 189 (615)
T ss_pred --------------------hhhcccccceeEEEecccc-eeeecCcHHHHHHhhhcc
Confidence 1122388889999999887 566777777665554443
No 495
>PRK10115 protease 2; Provisional
Probab=28.01 E-value=2.3e+02 Score=36.44 Aligned_cols=71 Identities=7% Similarity=-0.002 Sum_probs=45.4
Q ss_pred CeEEEEEcCCCCEEEEEeCC-----CcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCC
Q 001109 661 PICNLKFSNFGARLAVGFEC-----SQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSND 735 (1155)
Q Consensus 661 ~VtslafSpdg~~LAsGs~D-----g~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~ 735 (1155)
.+..+.+||||++||.+... -.|++.|+.++..+-. . ....-.+++|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~---i~~~~~~~~w~---------------------- 180 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--L---LDNVEPSFVWA---------------------- 180 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--c---ccCcceEEEEe----------------------
Confidence 36678899999999875443 3588899988764321 1 11112568887
Q ss_pred CCCcEEEEEeCC------ceEEEEECCCC
Q 001109 736 TKKETLFFMTKD------AHIVVCDSTTG 758 (1155)
Q Consensus 736 pd~~~L~s~s~D------g~I~vwd~~tG 758 (1155)
+|++.|+....| ..|..+++.|+
T Consensus 181 ~D~~~~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 181 NDSWTFYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred eCCCEEEEEEecCCCCCCCEEEEEECCCC
Confidence 566655554432 35777777776
No 496
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=27.63 E-value=1.1e+02 Score=21.60 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCEEEEEEcCCeEEEEc
Q 001109 44 TASILAFDHVQSLLAIGTQDGRIKVIG 70 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs~DG~I~vw~ 70 (1155)
.|.++|..+ .++|+++.-+-+|+|.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 467777775 5999999999999873
No 497
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.60 E-value=4.7e+02 Score=35.17 Aligned_cols=75 Identities=12% Similarity=0.060 Sum_probs=49.8
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCC
Q 001109 656 SVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSND 735 (1155)
Q Consensus 656 ~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~ 735 (1155)
..|..++.++.+...... +.+..-+.+.+|+.......+..++ .....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~---------------------- 243 (993)
T KOG1983|consen 195 SLIEYESLQVLYYSPTKI-LIGFNRGLVVIKDRASKYVQSAYLP--------NGQLES---------------------- 243 (993)
T ss_pred cccccccceeeeecCCCc-ceeeeeeeeeehhcccccchhhccc--------ccccCc----------------------
Confidence 446677888877666543 4455567788888665433322211 111112
Q ss_pred CCCcEEEEEeCCceEEEEECCCCcee
Q 001109 736 TKKETLFFMTKDAHIVVCDSTTGHIL 761 (1155)
Q Consensus 736 pd~~~L~s~s~Dg~I~vwd~~tG~~l 761 (1155)
.++..++++-.||.+..||...|..+
T Consensus 244 ~~~~~~v~~h~Dgs~~fWd~s~g~~~ 269 (993)
T KOG1983|consen 244 RDGSHFVSYHTDGSYAFWDVSSGKLQ 269 (993)
T ss_pred cCCceEEEEEecCCEEeeecCCCcee
Confidence 67899999999999999999998764
No 498
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=27.12 E-value=3.7e+02 Score=22.36 Aligned_cols=43 Identities=14% Similarity=0.322 Sum_probs=34.0
Q ss_pred CHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001109 1085 TVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNG 1132 (1155)
Q Consensus 1085 ~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~ 1132 (1155)
.+++|... +.+++.++.+--+.|-+-++-|+.|++.++.-...
T Consensus 5 ~l~~l~~~-----i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~ 47 (63)
T PF05739_consen 5 ELDELEQS-----IQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANEN 47 (63)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHH
Confidence 35666666 67999999999999999999999998877665443
No 499
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=26.65 E-value=90 Score=23.53 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=16.6
Q ss_pred CCcEEEEEeCCceEEEEECCC
Q 001109 737 KKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 737 d~~~L~s~s~Dg~I~vwd~~t 757 (1155)
++..|+.++.||+|..+|.+|
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 366899999999999999875
No 500
>PLN02193 nitrile-specifier protein
Probab=26.42 E-value=1.2e+03 Score=28.22 Aligned_cols=24 Identities=17% Similarity=-0.172 Sum_probs=16.9
Q ss_pred CCCEEEEEeCC----CcEEEEecCCccE
Q 001109 670 FGARLAVGFEC----SQVAMLDISTFSV 693 (1155)
Q Consensus 670 dg~~LAsGs~D----g~V~lWDi~~~~~ 693 (1155)
+++..+.|+.+ ..|.++|+.+.+.
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEE
Confidence 57777777765 3477888877654
Done!